Query 013359
Match_columns 444
No_of_seqs 261 out of 368
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:03:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013359.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013359hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11637 AmiB activator; Provi 99.2 1.2E-08 2.6E-13 107.4 27.8 64 130-193 191-254 (428)
2 PRK11637 AmiB activator; Provi 98.8 1E-06 2.2E-11 92.8 24.7 75 125-199 172-246 (428)
3 COG3883 Uncharacterized protei 98.8 3.2E-06 6.9E-11 83.3 23.3 156 41-196 41-214 (265)
4 PF12718 Tropomyosin_1: Tropom 98.5 2.6E-05 5.7E-10 70.7 20.2 136 43-183 5-140 (143)
5 PRK09039 hypothetical protein; 98.5 4.4E-05 9.6E-10 78.6 23.9 161 4-184 24-184 (343)
6 COG1579 Zn-ribbon protein, pos 98.5 5E-05 1.1E-09 74.2 22.7 121 44-170 23-143 (239)
7 COG4942 Membrane-bound metallo 98.5 7.8E-05 1.7E-09 77.9 25.5 82 123-204 161-242 (420)
8 TIGR02169 SMC_prok_A chromosom 98.4 8E-05 1.7E-09 86.5 25.1 15 44-58 293-307 (1164)
9 PF12718 Tropomyosin_1: Tropom 98.3 0.0001 2.2E-09 66.9 19.8 52 48-99 3-54 (143)
10 COG3883 Uncharacterized protei 98.3 0.00089 1.9E-08 66.3 25.6 157 44-202 37-213 (265)
11 PF00261 Tropomyosin: Tropomyo 98.2 0.0001 2.3E-09 71.9 18.4 143 53-196 2-144 (237)
12 PHA02562 46 endonuclease subun 98.1 0.00039 8.5E-09 75.2 21.6 89 112-200 302-393 (562)
13 COG1579 Zn-ribbon protein, pos 98.1 0.0013 2.8E-08 64.4 22.1 126 59-185 17-144 (239)
14 COG4942 Membrane-bound metallo 98.1 0.0019 4E-08 67.8 24.4 52 141-192 193-244 (420)
15 PF00261 Tropomyosin: Tropomyo 98.1 0.0022 4.8E-08 62.7 23.8 61 108-168 126-186 (237)
16 PRK02224 chromosome segregatio 98.0 0.016 3.4E-07 66.4 34.1 125 45-171 468-592 (880)
17 COG1196 Smc Chromosome segrega 98.0 0.001 2.3E-08 78.5 24.6 9 371-379 1021-1029(1163)
18 KOG0250 DNA repair protein RAD 98.0 0.0014 3E-08 74.8 23.5 79 109-187 351-430 (1074)
19 PRK03918 chromosome segregatio 98.0 0.0027 5.9E-08 72.4 26.1 15 171-185 679-693 (880)
20 KOG0250 DNA repair protein RAD 98.0 0.0014 3.1E-08 74.8 22.9 35 162-196 391-425 (1074)
21 PHA02562 46 endonuclease subun 97.9 0.0005 1.1E-08 74.4 18.6 20 43-62 179-198 (562)
22 TIGR01843 type_I_hlyD type I s 97.9 0.01 2.3E-07 61.4 27.1 31 39-69 75-105 (423)
23 PF07888 CALCOCO1: Calcium bin 97.9 0.026 5.6E-07 61.2 29.9 163 41-204 139-315 (546)
24 PRK02224 chromosome segregatio 97.9 0.0023 4.9E-08 73.2 23.2 27 44-70 205-231 (880)
25 PRK03918 chromosome segregatio 97.8 0.0033 7.1E-08 71.7 23.7 44 146-189 661-704 (880)
26 KOG0996 Structural maintenance 97.8 0.0023 5.1E-08 73.4 21.8 89 110-198 908-996 (1293)
27 PRK09039 hypothetical protein; 97.8 0.0036 7.8E-08 64.6 21.2 52 113-164 127-178 (343)
28 PF09726 Macoilin: Transmembra 97.7 0.0068 1.5E-07 67.9 23.6 163 42-204 457-654 (697)
29 PF05667 DUF812: Protein of un 97.7 0.0054 1.2E-07 67.5 22.3 150 47-196 323-478 (594)
30 KOG0161 Myosin class II heavy 97.7 0.0063 1.4E-07 74.1 24.4 58 128-185 1060-1117(1930)
31 PRK04863 mukB cell division pr 97.7 0.02 4.4E-07 69.0 28.0 37 162-198 439-475 (1486)
32 PF07888 CALCOCO1: Calcium bin 97.7 0.012 2.6E-07 63.7 23.6 52 50-101 141-192 (546)
33 KOG0933 Structural maintenance 97.6 0.02 4.3E-07 65.2 25.2 81 118-198 789-876 (1174)
34 KOG0996 Structural maintenance 97.6 0.016 3.4E-07 66.9 24.6 73 123-195 493-565 (1293)
35 TIGR00606 rad50 rad50. This fa 97.6 0.026 5.6E-07 67.7 27.2 26 236-276 1127-1152(1311)
36 PF15619 Lebercilin: Ciliary p 97.6 0.058 1.3E-06 51.5 24.2 155 45-200 12-185 (194)
37 PF00038 Filament: Intermediat 97.5 0.089 1.9E-06 52.9 26.5 36 143-178 215-250 (312)
38 PF12128 DUF3584: Protein of u 97.5 0.28 6E-06 58.6 34.3 32 347-378 983-1014(1201)
39 TIGR00606 rad50 rad50. This fa 97.5 0.009 1.9E-07 71.5 21.5 16 86-101 798-813 (1311)
40 KOG0995 Centromere-associated 97.5 0.24 5.2E-06 53.8 34.5 151 43-194 233-393 (581)
41 PF10174 Cast: RIM-binding pro 97.4 0.036 7.8E-07 62.8 24.2 99 46-145 323-421 (775)
42 KOG0933 Structural maintenance 97.4 0.11 2.4E-06 59.5 27.3 14 243-256 927-940 (1174)
43 PF00038 Filament: Intermediat 97.4 0.1 2.3E-06 52.4 25.3 40 146-185 211-250 (312)
44 PF05667 DUF812: Protein of un 97.4 0.013 2.9E-07 64.5 20.1 166 41-206 324-525 (594)
45 PF09726 Macoilin: Transmembra 97.4 0.0097 2.1E-07 66.7 19.3 98 43-141 423-520 (697)
46 KOG0243 Kinesin-like protein [ 97.4 0.23 4.9E-06 57.5 29.9 56 333-391 645-700 (1041)
47 KOG1029 Endocytic adaptor prot 97.4 0.016 3.4E-07 64.4 19.7 64 43-106 442-505 (1118)
48 PRK04863 mukB cell division pr 97.4 0.06 1.3E-06 65.1 26.5 25 230-254 484-508 (1486)
49 PRK11281 hypothetical protein; 97.4 0.025 5.4E-07 66.4 22.4 34 352-385 417-456 (1113)
50 PF08317 Spc7: Spc7 kinetochor 97.3 0.044 9.6E-07 56.1 21.6 74 125-198 211-288 (325)
51 TIGR01843 type_I_hlyD type I s 97.3 0.033 7.1E-07 57.7 20.8 23 172-194 246-268 (423)
52 COG4372 Uncharacterized protei 97.3 0.31 6.8E-06 50.7 28.4 38 63-100 106-143 (499)
53 PRK04778 septation ring format 97.3 0.45 9.7E-06 52.4 30.1 49 148-196 380-428 (569)
54 PF12128 DUF3584: Protein of u 97.3 0.76 1.7E-05 55.0 38.4 98 39-136 601-705 (1201)
55 PRK01156 chromosome segregatio 97.2 0.036 7.7E-07 63.8 22.0 43 146-188 676-718 (895)
56 PF12795 MscS_porin: Mechanose 97.2 0.18 3.9E-06 49.2 23.8 116 76-192 81-212 (240)
57 PF15619 Lebercilin: Ciliary p 97.2 0.2 4.3E-06 47.9 23.1 64 133-196 121-188 (194)
58 COG1340 Uncharacterized archae 97.2 0.22 4.7E-06 50.3 24.2 52 117-168 159-210 (294)
59 PRK04778 septation ring format 97.2 0.042 9.2E-07 60.3 21.1 19 43-61 254-272 (569)
60 PF05701 WEMBL: Weak chloropla 97.2 0.067 1.5E-06 58.2 22.3 18 59-76 242-259 (522)
61 PF07926 TPR_MLP1_2: TPR/MLP1/ 97.2 0.072 1.6E-06 47.5 18.6 65 109-173 59-127 (132)
62 PF13851 GAS: Growth-arrest sp 97.2 0.17 3.8E-06 48.4 22.2 104 47-155 29-132 (201)
63 PRK01156 chromosome segregatio 97.1 0.11 2.3E-06 59.9 24.3 12 371-382 761-772 (895)
64 PF08614 ATG16: Autophagy prot 97.1 0.0097 2.1E-07 56.4 13.2 63 40-102 69-131 (194)
65 COG4372 Uncharacterized protei 97.1 0.29 6.3E-06 50.9 24.0 43 154-196 234-276 (499)
66 COG1340 Uncharacterized archae 97.1 0.41 8.9E-06 48.4 27.2 53 44-96 40-92 (294)
67 PF05701 WEMBL: Weak chloropla 97.1 0.11 2.4E-06 56.6 22.4 76 121-196 279-354 (522)
68 KOG0995 Centromere-associated 97.1 0.15 3.2E-06 55.4 22.7 151 50-204 233-392 (581)
69 PF10174 Cast: RIM-binding pro 97.0 0.07 1.5E-06 60.5 21.1 109 82-191 289-397 (775)
70 TIGR01000 bacteriocin_acc bact 97.0 0.28 6E-06 52.4 24.8 28 41-68 93-120 (457)
71 KOG4674 Uncharacterized conser 97.0 0.17 3.7E-06 61.5 24.7 33 118-150 1309-1341(1822)
72 KOG0994 Extracellular matrix g 97.0 0.5 1.1E-05 55.0 26.8 155 43-198 1547-1701(1758)
73 PF08317 Spc7: Spc7 kinetochor 97.0 0.12 2.5E-06 53.0 20.6 81 113-193 181-265 (325)
74 KOG0946 ER-Golgi vesicle-tethe 97.0 0.21 4.5E-06 56.2 23.3 43 109-151 737-779 (970)
75 PF05911 DUF869: Plant protein 97.0 0.1 2.2E-06 59.1 21.5 127 41-168 585-711 (769)
76 PF10473 CENP-F_leu_zip: Leuci 96.9 0.29 6.3E-06 44.4 20.5 21 120-140 77-97 (140)
77 KOG1029 Endocytic adaptor prot 96.9 0.11 2.3E-06 58.0 20.5 55 50-104 414-468 (1118)
78 PF15070 GOLGA2L5: Putative go 96.9 1.1 2.3E-05 50.1 28.4 129 50-178 20-149 (617)
79 PF08614 ATG16: Autophagy prot 96.9 0.019 4.1E-07 54.5 12.6 38 148-185 134-171 (194)
80 smart00787 Spc7 Spc7 kinetocho 96.8 0.27 5.9E-06 50.2 21.3 55 144-198 225-283 (312)
81 KOG0978 E3 ubiquitin ligase in 96.8 0.64 1.4E-05 52.1 25.4 95 129-223 544-642 (698)
82 PF12795 MscS_porin: Mechanose 96.8 0.49 1.1E-05 46.2 22.2 27 44-70 84-110 (240)
83 KOG0980 Actin-binding protein 96.8 0.39 8.4E-06 54.5 23.4 43 109-151 459-501 (980)
84 KOG0964 Structural maintenance 96.8 0.2 4.3E-06 57.3 21.2 45 152-196 454-498 (1200)
85 KOG4643 Uncharacterized coiled 96.7 0.078 1.7E-06 60.6 18.0 146 40-185 172-335 (1195)
86 PRK10929 putative mechanosensi 96.7 0.49 1.1E-05 55.9 25.3 61 136-196 179-239 (1109)
87 KOG4673 Transcription factor T 96.7 0.79 1.7E-05 50.9 24.9 36 115-150 522-557 (961)
88 KOG0980 Actin-binding protein 96.7 0.43 9.3E-06 54.1 23.3 124 49-173 390-516 (980)
89 smart00787 Spc7 Spc7 kinetocho 96.7 0.34 7.3E-06 49.6 21.1 81 113-193 176-260 (312)
90 PF09730 BicD: Microtubule-ass 96.7 0.94 2E-05 51.1 26.1 161 44-204 264-458 (717)
91 TIGR03007 pepcterm_ChnLen poly 96.7 0.56 1.2E-05 50.3 23.7 61 43-103 166-234 (498)
92 TIGR03185 DNA_S_dndD DNA sulfu 96.7 0.71 1.5E-05 51.5 25.3 45 41-85 205-249 (650)
93 KOG1003 Actin filament-coating 96.6 0.65 1.4E-05 44.2 22.0 56 44-99 17-72 (205)
94 PF15070 GOLGA2L5: Putative go 96.6 0.38 8.2E-06 53.5 22.4 101 42-142 84-186 (617)
95 PRK11281 hypothetical protein; 96.6 0.36 7.8E-06 57.0 23.1 33 158-190 220-252 (1113)
96 PF04012 PspA_IM30: PspA/IM30 96.6 0.78 1.7E-05 44.0 23.4 117 48-167 26-142 (221)
97 PF04849 HAP1_N: HAP1 N-termin 96.5 0.38 8.2E-06 48.9 19.7 38 41-78 156-193 (306)
98 PF04849 HAP1_N: HAP1 N-termin 96.5 0.68 1.5E-05 47.1 21.5 85 113-197 210-301 (306)
99 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.5 0.49 1.1E-05 42.2 18.5 67 115-184 58-124 (132)
100 KOG0018 Structural maintenance 96.5 0.21 4.6E-06 57.5 19.5 38 59-96 711-748 (1141)
101 TIGR01000 bacteriocin_acc bact 96.5 0.2 4.4E-06 53.4 18.7 26 39-64 98-123 (457)
102 KOG0964 Structural maintenance 96.5 0.48 1E-05 54.3 21.8 40 42-81 255-294 (1200)
103 PF13870 DUF4201: Domain of un 96.5 0.76 1.7E-05 42.8 23.6 119 44-163 5-131 (177)
104 KOG4360 Uncharacterized coiled 96.5 0.23 5E-06 53.2 18.3 164 46-217 160-329 (596)
105 PF11932 DUF3450: Protein of u 96.4 0.61 1.3E-05 45.9 20.5 11 171-181 130-140 (251)
106 KOG0977 Nuclear envelope prote 96.4 0.33 7.1E-06 52.9 19.7 73 113-185 103-175 (546)
107 TIGR01005 eps_transp_fam exopo 96.4 0.51 1.1E-05 53.4 22.3 19 171-189 375-393 (754)
108 KOG1853 LIS1-interacting prote 96.4 1.2 2.5E-05 44.2 21.8 152 44-202 26-180 (333)
109 PF05911 DUF869: Plant protein 96.4 0.27 5.9E-06 55.8 19.6 80 116-195 638-717 (769)
110 KOG0612 Rho-associated, coiled 96.4 0.84 1.8E-05 53.5 23.4 41 66-106 494-534 (1317)
111 KOG4674 Uncharacterized conser 96.4 0.85 1.8E-05 55.8 24.3 128 73-200 689-826 (1822)
112 KOG0976 Rho/Rac1-interacting s 96.3 2.7 5.8E-05 47.6 27.3 94 80-173 284-380 (1265)
113 PF04111 APG6: Autophagy prote 96.3 0.11 2.4E-06 53.0 14.7 23 378-401 273-295 (314)
114 PF13851 GAS: Growth-arrest sp 96.3 1.1 2.4E-05 42.9 20.9 15 178-192 149-163 (201)
115 KOG0971 Microtubule-associated 96.3 0.95 2.1E-05 51.6 22.4 67 63-129 400-475 (1243)
116 PF09304 Cortex-I_coil: Cortex 96.2 0.39 8.5E-06 41.5 15.1 40 117-156 59-98 (107)
117 COG5185 HEC1 Protein involved 96.2 1 2.2E-05 48.0 21.1 41 339-379 566-606 (622)
118 TIGR03007 pepcterm_ChnLen poly 96.1 0.73 1.6E-05 49.4 20.8 22 393-414 475-496 (498)
119 KOG0977 Nuclear envelope prote 96.1 0.34 7.4E-06 52.8 18.0 73 113-185 117-189 (546)
120 PRK10929 putative mechanosensi 96.1 0.73 1.6E-05 54.5 21.9 63 140-202 176-238 (1109)
121 PF04111 APG6: Autophagy prote 96.1 0.17 3.6E-06 51.8 14.9 69 123-191 64-132 (314)
122 KOG0979 Structural maintenance 96.1 1.2 2.7E-05 51.3 22.7 56 47-102 176-237 (1072)
123 KOG0018 Structural maintenance 96.1 1.5 3.3E-05 50.9 23.3 77 115-191 380-456 (1141)
124 TIGR01005 eps_transp_fam exopo 96.1 0.47 1E-05 53.7 19.8 27 137-163 345-371 (754)
125 TIGR02680 conserved hypothetic 96.1 1.2 2.6E-05 54.0 24.0 30 361-390 607-636 (1353)
126 KOG0976 Rho/Rac1-interacting s 96.1 0.97 2.1E-05 51.0 21.0 55 42-96 103-157 (1265)
127 KOG0994 Extracellular matrix g 96.0 1 2.2E-05 52.6 21.6 149 54-202 1586-1747(1758)
128 PF10186 Atg14: UV radiation r 96.0 1.2 2.6E-05 44.0 20.3 78 115-192 69-146 (302)
129 KOG0971 Microtubule-associated 96.0 1.7 3.6E-05 49.8 22.8 19 369-387 708-726 (1243)
130 PF06160 EzrA: Septation ring 96.0 0.95 2E-05 49.8 21.2 19 43-61 250-268 (560)
131 PF06008 Laminin_I: Laminin Do 96.0 1.9 4E-05 42.7 23.0 173 50-226 22-199 (264)
132 PF04582 Reo_sigmaC: Reovirus 95.9 0.015 3.2E-07 59.3 6.2 124 47-185 30-153 (326)
133 PF15397 DUF4618: Domain of un 95.9 2.1 4.6E-05 42.6 23.1 31 169-199 190-220 (258)
134 PF13870 DUF4201: Domain of un 95.9 1.5 3.3E-05 40.7 21.9 142 78-223 11-152 (177)
135 COG5185 HEC1 Protein involved 95.9 1.5 3.2E-05 46.9 20.5 62 111-172 339-403 (622)
136 PF10186 Atg14: UV radiation r 95.8 1.3 2.8E-05 43.7 19.6 24 47-70 22-45 (302)
137 KOG4360 Uncharacterized coiled 95.8 1.2 2.6E-05 48.0 19.7 88 109-196 205-299 (596)
138 PF09789 DUF2353: Uncharacteri 95.8 2.7 5.9E-05 43.1 22.2 80 116-195 133-226 (319)
139 KOG0963 Transcription factor/C 95.8 2 4.3E-05 47.3 21.8 121 78-198 194-343 (629)
140 PF12325 TMF_TATA_bd: TATA ele 95.8 0.64 1.4E-05 41.1 15.2 13 47-59 18-30 (120)
141 PF09755 DUF2046: Uncharacteri 95.8 2.7 5.9E-05 42.8 25.8 100 113-212 110-211 (310)
142 PF05384 DegS: Sensor protein 95.7 1.7 3.7E-05 40.3 19.4 127 50-183 25-151 (159)
143 TIGR03185 DNA_S_dndD DNA sulfu 95.7 1.1 2.4E-05 50.0 20.4 40 60-99 392-433 (650)
144 PRK10884 SH3 domain-containing 95.7 0.24 5.2E-06 47.7 13.1 45 148-192 122-166 (206)
145 KOG0963 Transcription factor/C 95.6 1.2 2.7E-05 48.9 19.5 20 50-69 194-213 (629)
146 TIGR03017 EpsF chain length de 95.6 3.7 8E-05 43.3 23.5 15 114-128 259-273 (444)
147 PF01576 Myosin_tail_1: Myosin 95.5 0.0035 7.5E-08 72.0 0.0 160 42-201 332-504 (859)
148 KOG1003 Actin filament-coating 95.5 2.3 5.1E-05 40.6 21.4 142 46-188 5-146 (205)
149 PF00769 ERM: Ezrin/radixin/mo 95.5 1.3 2.7E-05 43.9 18.0 121 61-196 7-127 (246)
150 PF09730 BicD: Microtubule-ass 95.5 2.9 6.2E-05 47.4 22.6 146 43-196 32-180 (717)
151 KOG0612 Rho-associated, coiled 95.5 1.1 2.5E-05 52.5 19.6 71 70-141 462-533 (1317)
152 PRK10476 multidrug resistance 95.5 1.5 3.3E-05 44.8 19.2 27 43-69 84-110 (346)
153 PF01576 Myosin_tail_1: Myosin 95.5 0.0037 8E-08 71.7 0.0 100 61-161 133-232 (859)
154 COG0419 SbcC ATPase involved i 95.5 3.4 7.4E-05 48.0 24.0 83 114-196 359-441 (908)
155 KOG0978 E3 ubiquitin ligase in 95.4 3.8 8.3E-05 46.1 22.7 94 111-204 519-612 (698)
156 PF12329 TMF_DNA_bd: TATA elem 95.4 0.2 4.3E-06 40.5 9.7 66 79-145 4-69 (74)
157 PRK10884 SH3 domain-containing 95.4 0.39 8.4E-06 46.3 13.3 26 42-67 90-115 (206)
158 PF00769 ERM: Ezrin/radixin/mo 95.3 2.2 4.8E-05 42.1 18.8 83 114-196 31-113 (246)
159 COG2433 Uncharacterized conser 95.3 0.32 6.9E-06 53.2 13.7 12 260-271 584-595 (652)
160 PF06818 Fez1: Fez1; InterPro 95.3 3 6.5E-05 40.1 19.9 28 43-70 15-42 (202)
161 KOG0999 Microtubule-associated 95.2 5.6 0.00012 43.5 22.5 43 154-196 166-211 (772)
162 PF10481 CENP-F_N: Cenp-F N-te 95.2 1.3 2.7E-05 44.4 16.5 75 124-198 61-135 (307)
163 PF12325 TMF_TATA_bd: TATA ele 95.2 1.3 2.9E-05 39.2 15.1 19 81-99 24-42 (120)
164 KOG4673 Transcription factor T 95.2 5.1 0.00011 44.8 22.3 42 58-99 466-507 (961)
165 COG0419 SbcC ATPase involved i 95.1 4 8.6E-05 47.5 23.1 11 47-57 554-564 (908)
166 PF10146 zf-C4H2: Zinc finger- 95.1 1.3 2.8E-05 43.5 16.2 45 155-199 57-101 (230)
167 PF10481 CENP-F_N: Cenp-F N-te 95.1 2 4.4E-05 43.0 17.4 106 45-151 18-123 (307)
168 KOG0804 Cytoplasmic Zn-finger 95.1 1.3 2.9E-05 47.0 17.1 70 113-185 379-448 (493)
169 PF13166 AAA_13: AAA domain 95.1 4.2 9.1E-05 45.5 22.6 15 369-383 633-647 (712)
170 KOG4643 Uncharacterized coiled 95.1 5.9 0.00013 46.0 23.1 39 115-153 480-518 (1195)
171 PF04582 Reo_sigmaC: Reovirus 95.0 0.041 8.9E-07 56.2 5.9 63 41-103 31-93 (326)
172 PRK10361 DNA recombination pro 95.0 6.4 0.00014 42.6 24.3 61 75-139 62-122 (475)
173 TIGR02680 conserved hypothetic 95.0 1.8 3.8E-05 52.6 20.4 153 43-196 228-392 (1353)
174 PF07106 TBPIP: Tat binding pr 95.0 0.27 5.8E-06 45.5 10.6 57 45-101 72-137 (169)
175 KOG1899 LAR transmembrane tyro 95.0 1.2 2.7E-05 49.0 16.8 144 38-196 104-248 (861)
176 KOG0946 ER-Golgi vesicle-tethe 94.9 2.9 6.3E-05 47.4 19.9 25 174-198 801-825 (970)
177 TIGR02977 phageshock_pspA phag 94.9 3.9 8.5E-05 39.5 23.8 109 50-161 29-137 (219)
178 PF14915 CCDC144C: CCDC144C pr 94.9 5.1 0.00011 40.6 21.5 50 51-100 143-192 (305)
179 COG1842 PspA Phage shock prote 94.8 4.3 9.3E-05 39.7 19.0 48 48-95 27-74 (225)
180 PF14362 DUF4407: Domain of un 94.8 1.5 3.2E-05 44.2 16.5 21 204-224 257-277 (301)
181 PF09304 Cortex-I_coil: Cortex 94.8 2.4 5.2E-05 36.7 15.5 31 124-154 38-68 (107)
182 PF05483 SCP-1: Synaptonemal c 94.8 8.9 0.00019 42.9 23.2 49 148-196 598-646 (786)
183 KOG1937 Uncharacterized conser 94.7 7.2 0.00016 41.6 22.1 46 169-214 386-431 (521)
184 PF06818 Fez1: Fez1; InterPro 94.6 4.4 9.6E-05 39.0 20.2 49 46-94 11-59 (202)
185 PF07106 TBPIP: Tat binding pr 94.6 0.19 4.1E-06 46.5 8.7 63 68-136 74-136 (169)
186 PF06785 UPF0242: Uncharacteri 94.6 4.8 0.0001 41.4 19.0 121 67-188 79-217 (401)
187 TIGR03319 YmdA_YtgF conserved 94.6 4.1 8.8E-05 44.6 20.1 20 234-253 253-272 (514)
188 PF10146 zf-C4H2: Zinc finger- 94.6 1.6 3.5E-05 42.8 15.4 53 142-194 51-103 (230)
189 KOG0804 Cytoplasmic Zn-finger 94.6 2.4 5.3E-05 45.0 17.4 71 108-181 381-451 (493)
190 TIGR00998 8a0101 efflux pump m 94.5 5 0.00011 40.4 19.6 57 41-97 76-132 (334)
191 COG2433 Uncharacterized conser 94.5 0.92 2E-05 49.8 14.7 43 111-153 424-466 (652)
192 TIGR00634 recN DNA repair prot 94.5 4.9 0.00011 44.2 20.7 44 43-86 159-202 (563)
193 PF13514 AAA_27: AAA domain 94.4 4.6 0.0001 48.0 21.7 38 148-185 893-930 (1111)
194 TIGR03017 EpsF chain length de 94.4 2.7 5.8E-05 44.3 18.0 24 44-67 214-237 (444)
195 PF05335 DUF745: Protein of un 94.3 5 0.00011 38.3 18.8 113 70-190 64-176 (188)
196 KOG1937 Uncharacterized conser 94.3 7.2 0.00016 41.7 20.0 156 33-204 219-377 (521)
197 PF05010 TACC: Transforming ac 94.3 5.5 0.00012 38.5 25.9 129 50-196 14-142 (207)
198 KOG0979 Structural maintenance 94.2 7.7 0.00017 45.1 21.5 39 45-83 181-219 (1072)
199 PF05622 HOOK: HOOK protein; 94.2 0.014 2.9E-07 65.8 0.0 11 300-310 539-549 (713)
200 KOG0243 Kinesin-like protein [ 94.1 15 0.00033 43.1 31.5 16 44-59 410-425 (1041)
201 PF13166 AAA_13: AAA domain 94.1 6.3 0.00014 44.1 21.0 31 152-182 425-455 (712)
202 PF11559 ADIP: Afadin- and alp 94.0 2.9 6.4E-05 37.8 15.0 10 183-192 137-146 (151)
203 TIGR03794 NHPM_micro_HlyD NHPM 94.0 9.4 0.0002 40.2 22.0 26 41-66 92-117 (421)
204 COG4477 EzrA Negative regulato 94.0 5.5 0.00012 43.4 18.9 21 109-129 316-336 (570)
205 PRK10698 phage shock protein P 93.9 6.7 0.00014 38.2 23.4 112 50-161 29-144 (222)
206 COG1382 GimC Prefoldin, chaper 93.9 2 4.4E-05 37.9 13.0 8 173-180 85-92 (119)
207 PRK03947 prefoldin subunit alp 93.8 2.2 4.8E-05 38.1 13.5 31 45-75 6-36 (140)
208 PF05010 TACC: Transforming ac 93.7 7 0.00015 37.8 22.3 40 116-155 90-129 (207)
209 PF10168 Nup88: Nuclear pore c 93.7 4.1 8.8E-05 46.3 18.5 18 111-128 602-619 (717)
210 PRK00106 hypothetical protein; 93.7 8.2 0.00018 42.4 20.2 19 235-253 275-293 (535)
211 TIGR02971 heterocyst_DevB ABC 93.7 7.4 0.00016 39.2 18.9 27 44-70 54-80 (327)
212 PRK03947 prefoldin subunit alp 93.7 2.2 4.7E-05 38.1 13.3 39 51-89 5-43 (140)
213 PF06008 Laminin_I: Laminin Do 93.6 8.3 0.00018 38.1 23.7 51 50-100 64-114 (264)
214 PHA03332 membrane glycoprotein 93.6 2.5 5.5E-05 49.1 16.2 18 109-126 930-947 (1328)
215 KOG0288 WD40 repeat protein Ti 93.6 4.8 0.0001 42.5 17.0 31 115-145 47-77 (459)
216 PF10498 IFT57: Intra-flagella 93.5 5.5 0.00012 41.6 17.7 120 74-197 221-346 (359)
217 KOG4809 Rab6 GTPase-interactin 93.4 4.3 9.3E-05 44.2 16.9 12 339-350 578-589 (654)
218 PF13514 AAA_27: AAA domain 93.4 8.9 0.00019 45.7 21.5 39 45-83 736-774 (1111)
219 PF11570 E2R135: Coiled-coil r 93.4 3.1 6.7E-05 37.2 13.2 45 47-91 10-54 (136)
220 TIGR01010 BexC_CtrB_KpsE polys 93.4 6.8 0.00015 40.4 18.2 125 72-196 169-302 (362)
221 PF05266 DUF724: Protein of un 93.3 5.6 0.00012 37.9 16.1 74 120-193 107-180 (190)
222 PRK10869 recombination and rep 93.3 7.1 0.00015 43.0 19.1 63 141-203 300-365 (553)
223 KOG2991 Splicing regulator [RN 93.3 9.6 0.00021 38.0 21.1 49 148-196 254-302 (330)
224 PRK12704 phosphodiesterase; Pr 93.2 7.1 0.00015 42.8 18.9 18 369-386 316-333 (520)
225 PF15254 CCDC14: Coiled-coil d 93.2 15 0.00031 41.9 21.1 59 141-199 491-549 (861)
226 PRK09343 prefoldin subunit bet 93.2 2.9 6.2E-05 36.9 13.0 26 45-70 7-32 (121)
227 PF05622 HOOK: HOOK protein; 93.1 0.026 5.7E-07 63.5 0.0 14 156-169 368-381 (713)
228 KOG0999 Microtubule-associated 93.0 17 0.00036 40.0 23.6 44 120-163 146-189 (772)
229 PRK15178 Vi polysaccharide exp 93.0 13 0.00029 39.7 19.9 149 52-202 223-388 (434)
230 PRK04406 hypothetical protein; 92.9 0.88 1.9E-05 37.0 8.6 50 140-189 7-56 (75)
231 COG1382 GimC Prefoldin, chaper 92.9 3.3 7.3E-05 36.6 12.8 41 46-86 7-47 (119)
232 PF02994 Transposase_22: L1 tr 92.9 0.35 7.7E-06 50.5 7.9 21 282-302 289-309 (370)
233 TIGR02971 heterocyst_DevB ABC 92.8 8 0.00017 39.0 17.5 18 177-194 184-201 (327)
234 COG3206 GumC Uncharacterized p 92.8 11 0.00024 40.3 19.3 145 44-192 238-393 (458)
235 PF02994 Transposase_22: L1 tr 92.7 0.38 8.2E-06 50.3 7.9 13 87-99 105-117 (370)
236 PF09787 Golgin_A5: Golgin sub 92.6 9.6 0.00021 41.5 18.8 33 161-193 277-309 (511)
237 KOG2991 Splicing regulator [RN 92.6 12 0.00026 37.3 18.7 63 125-187 238-300 (330)
238 KOG1962 B-cell receptor-associ 92.6 1.5 3.4E-05 42.5 11.2 17 186-202 193-209 (216)
239 PF05557 MAD: Mitotic checkpoi 92.4 0.2 4.4E-06 56.6 5.8 58 43-100 341-398 (722)
240 TIGR02338 gimC_beta prefoldin, 92.4 4.1 8.9E-05 35.1 12.6 33 47-79 5-37 (110)
241 KOG0239 Kinesin (KAR3 subfamil 92.3 11 0.00024 42.6 19.2 65 124-188 228-292 (670)
242 PRK02119 hypothetical protein; 92.3 0.99 2.1E-05 36.5 8.1 51 140-190 5-55 (73)
243 PF04102 SlyX: SlyX; InterPro 92.3 0.79 1.7E-05 36.5 7.4 51 142-192 2-52 (69)
244 TIGR02977 phageshock_pspA phag 92.2 12 0.00025 36.2 19.4 15 167-181 115-129 (219)
245 PRK09343 prefoldin subunit bet 92.2 6.3 0.00014 34.7 13.8 32 155-186 75-106 (121)
246 PF12761 End3: Actin cytoskele 92.0 1.2 2.6E-05 42.6 9.5 96 46-142 97-193 (195)
247 PF14073 Cep57_CLD: Centrosome 92.0 11 0.00024 35.6 20.9 140 47-194 6-163 (178)
248 KOG4438 Centromere-associated 92.0 19 0.00042 38.3 21.8 47 48-94 148-194 (446)
249 PF05557 MAD: Mitotic checkpoi 92.0 0.045 9.8E-07 61.7 0.0 11 44-54 67-77 (722)
250 COG1842 PspA Phage shock prote 91.9 13 0.00029 36.3 21.2 48 145-192 93-140 (225)
251 PF05483 SCP-1: Synaptonemal c 91.8 26 0.00056 39.5 26.9 69 111-179 582-650 (786)
252 PRK00295 hypothetical protein; 91.8 1.4 3E-05 35.1 8.3 49 142-190 3-51 (68)
253 PRK02793 phi X174 lysis protei 91.8 1.3 2.8E-05 35.7 8.2 50 141-190 5-54 (72)
254 PRK00736 hypothetical protein; 91.7 1.3 2.8E-05 35.3 8.1 49 142-190 3-51 (68)
255 PF08647 BRE1: BRE1 E3 ubiquit 91.7 5.2 0.00011 33.8 12.2 58 78-136 15-72 (96)
256 COG4026 Uncharacterized protei 91.7 5 0.00011 39.2 13.3 73 112-184 138-210 (290)
257 PRK10246 exonuclease subunit S 91.6 19 0.00042 42.7 21.0 29 156-184 827-855 (1047)
258 PRK09841 cryptic autophosphory 91.6 11 0.00024 42.9 18.3 46 141-190 343-388 (726)
259 PF12329 TMF_DNA_bd: TATA elem 91.5 2.5 5.4E-05 34.2 9.7 20 86-105 4-23 (74)
260 COG4026 Uncharacterized protei 91.5 2.3 5E-05 41.4 10.9 78 110-187 129-206 (290)
261 TIGR02338 gimC_beta prefoldin, 91.5 4 8.7E-05 35.1 11.6 32 56-87 7-38 (110)
262 PF09403 FadA: Adhesion protei 91.5 9.7 0.00021 34.0 14.2 27 42-68 24-50 (126)
263 PF09728 Taxilin: Myosin-like 91.5 18 0.0004 37.0 22.1 152 41-192 131-306 (309)
264 PF10168 Nup88: Nuclear pore c 91.4 7 0.00015 44.4 16.5 42 62-103 561-602 (717)
265 PF15450 DUF4631: Domain of un 91.4 25 0.00054 38.3 21.2 43 90-133 333-375 (531)
266 cd00632 Prefoldin_beta Prefold 91.3 7.3 0.00016 33.2 12.9 14 48-61 9-22 (105)
267 PF08581 Tup_N: Tup N-terminal 91.3 7.3 0.00016 32.0 12.3 75 121-198 2-76 (79)
268 cd00632 Prefoldin_beta Prefold 91.3 3.6 7.8E-05 35.1 11.0 35 50-84 4-38 (105)
269 PF10805 DUF2730: Protein of u 91.2 1.8 3.9E-05 37.3 9.1 59 42-100 32-92 (106)
270 PRK04325 hypothetical protein; 91.2 1.6 3.4E-05 35.4 8.2 50 141-190 6-55 (74)
271 PRK09841 cryptic autophosphory 91.1 7.7 0.00017 44.1 16.5 28 66-93 267-294 (726)
272 PF05384 DegS: Sensor protein 91.0 13 0.00028 34.5 21.8 139 52-190 6-151 (159)
273 PF15294 Leu_zip: Leucine zipp 91.0 8.8 0.00019 38.7 14.9 48 40-87 127-174 (278)
274 PF15397 DUF4618: Domain of un 91.0 18 0.0004 36.1 21.7 41 158-198 186-226 (258)
275 PF14915 CCDC144C: CCDC144C pr 90.9 20 0.00043 36.5 22.2 104 45-149 151-254 (305)
276 TIGR02231 conserved hypothetic 90.8 3.9 8.5E-05 44.5 13.4 22 79-100 70-91 (525)
277 COG1730 GIM5 Predicted prefold 90.8 13 0.00028 34.0 14.7 41 153-193 96-136 (145)
278 PRK00846 hypothetical protein; 90.7 2.6 5.6E-05 34.5 9.0 53 140-192 9-61 (77)
279 PF01442 Apolipoprotein: Apoli 90.6 13 0.00028 33.7 25.1 23 50-72 3-25 (202)
280 PF05335 DUF745: Protein of un 90.6 16 0.00035 34.8 17.8 114 72-193 59-172 (188)
281 PF05278 PEARLI-4: Arabidopsis 90.5 21 0.00045 35.9 18.0 62 142-203 191-252 (269)
282 COG3206 GumC Uncharacterized p 90.4 7.5 0.00016 41.5 14.9 45 46-90 286-330 (458)
283 KOG4302 Microtubule-associated 90.4 35 0.00077 38.4 21.3 48 38-85 96-143 (660)
284 KOG0962 DNA repair protein RAD 90.3 38 0.00082 40.9 21.3 15 78-92 242-256 (1294)
285 PF13863 DUF4200: Domain of un 90.3 11 0.00025 32.6 17.8 35 57-91 12-46 (126)
286 PRK10803 tol-pal system protei 90.2 2.9 6.3E-05 41.6 10.9 7 41-47 36-42 (263)
287 COG0497 RecN ATPase involved i 90.2 28 0.00061 38.5 19.0 66 139-204 299-367 (557)
288 PF04108 APG17: Autophagy prot 90.2 28 0.00061 36.9 23.5 48 165-212 353-400 (412)
289 PF15254 CCDC14: Coiled-coil d 90.1 15 0.00033 41.7 17.0 151 47-198 389-555 (861)
290 COG1730 GIM5 Predicted prefold 90.1 13 0.00029 33.9 14.1 29 45-73 6-34 (145)
291 PRK10246 exonuclease subunit S 90.1 48 0.001 39.5 26.4 49 44-92 529-577 (1047)
292 KOG0962 DNA repair protein RAD 89.9 30 0.00065 41.7 20.1 11 39-49 166-176 (1294)
293 PF06785 UPF0242: Uncharacteri 89.9 20 0.00044 37.1 16.4 113 68-181 73-185 (401)
294 PF10234 Cluap1: Clusterin-ass 89.8 19 0.00042 36.1 16.2 29 160-188 227-255 (267)
295 PF15450 DUF4631: Domain of un 89.7 34 0.00075 37.3 19.2 15 86-100 357-371 (531)
296 COG3096 MukB Uncharacterized p 89.6 34 0.00073 39.1 19.0 124 60-185 301-424 (1480)
297 PF15066 CAGE1: Cancer-associa 89.6 33 0.00072 37.0 22.3 27 159-185 479-505 (527)
298 PF15066 CAGE1: Cancer-associa 89.6 33 0.00072 36.9 20.0 48 77-124 328-377 (527)
299 PRK03598 putative efflux pump 89.6 18 0.00039 36.6 16.4 50 42-93 78-127 (331)
300 KOG4603 TBP-1 interacting prot 89.6 14 0.00031 34.7 13.9 22 75-96 81-102 (201)
301 KOG1899 LAR transmembrane tyro 89.5 11 0.00024 41.8 15.1 56 44-99 131-186 (861)
302 PF10212 TTKRSYEDQ: Predicted 89.4 37 0.00079 37.2 21.6 59 129-187 419-477 (518)
303 PF10267 Tmemb_cc2: Predicted 89.3 17 0.00037 38.5 16.1 17 162-178 302-318 (395)
304 TIGR01010 BexC_CtrB_KpsE polys 89.3 23 0.0005 36.5 17.0 26 69-94 173-198 (362)
305 PF14282 FlxA: FlxA-like prote 89.0 4 8.7E-05 35.1 9.4 25 42-66 16-40 (106)
306 PF12777 MT: Microtubule-bindi 88.9 1.7 3.8E-05 44.7 8.5 76 109-184 235-310 (344)
307 KOG0239 Kinesin (KAR3 subfamil 88.9 38 0.00083 38.4 19.4 122 59-185 175-296 (670)
308 PF04375 HemX: HemX; InterPro 88.8 32 0.00068 36.0 17.7 25 45-69 53-77 (372)
309 PF03962 Mnd1: Mnd1 family; I 88.7 17 0.00036 34.5 14.3 18 116-133 110-127 (188)
310 PRK11519 tyrosine kinase; Prov 88.6 18 0.00039 41.1 17.0 40 142-185 344-383 (719)
311 KOG0249 LAR-interacting protei 88.6 30 0.00066 39.1 17.8 26 110-135 157-182 (916)
312 COG3352 FlaC Putative archaeal 88.5 7.1 0.00015 35.9 10.9 95 45-139 44-138 (157)
313 PF14282 FlxA: FlxA-like prote 88.4 3.8 8.3E-05 35.3 8.9 23 79-101 18-40 (106)
314 KOG4460 Nuclear pore complex, 88.3 45 0.00097 36.8 19.9 92 50-141 586-687 (741)
315 TIGR03794 NHPM_micro_HlyD NHPM 88.2 37 0.0008 35.7 19.9 26 48-73 92-117 (421)
316 PF03148 Tektin: Tektin family 88.1 37 0.00081 35.7 21.9 159 39-197 117-304 (384)
317 PF08172 CASP_C: CASP C termin 88.0 12 0.00027 37.0 13.4 18 370-387 202-219 (248)
318 PF14197 Cep57_CLD_2: Centroso 87.9 7.2 0.00016 31.2 9.5 22 117-138 41-62 (69)
319 KOG0982 Centrosomal protein Nu 87.9 42 0.00091 35.9 21.3 58 111-168 306-363 (502)
320 TIGR03495 phage_LysB phage lys 87.8 18 0.0004 32.7 13.1 75 46-135 20-94 (135)
321 PRK04406 hypothetical protein; 87.5 5.2 0.00011 32.5 8.6 42 149-190 9-50 (75)
322 KOG2264 Exostosin EXT1L [Signa 87.4 4.4 9.6E-05 44.4 10.4 68 126-193 82-149 (907)
323 KOG2077 JNK/SAPK-associated pr 87.4 22 0.00048 39.2 15.5 82 121-202 299-380 (832)
324 PF10211 Ax_dynein_light: Axon 87.4 27 0.00058 33.1 16.2 45 42-86 30-76 (189)
325 PRK14011 prefoldin subunit alp 87.3 15 0.00032 33.6 12.4 41 53-93 4-44 (144)
326 PF06005 DUF904: Protein of un 87.3 14 0.0003 29.8 11.5 24 76-99 7-30 (72)
327 PF04912 Dynamitin: Dynamitin 87.1 42 0.00092 35.2 19.0 32 39-70 240-272 (388)
328 PRK15396 murein lipoprotein; P 87.1 7.9 0.00017 31.8 9.4 25 46-70 26-50 (78)
329 PRK10476 multidrug resistance 87.1 28 0.0006 35.5 15.9 27 49-75 83-109 (346)
330 PRK11519 tyrosine kinase; Prov 87.1 45 0.00098 37.9 18.9 14 371-384 624-637 (719)
331 PF02403 Seryl_tRNA_N: Seryl-t 87.0 11 0.00023 32.1 10.8 19 78-96 34-52 (108)
332 PRK15422 septal ring assembly 87.0 15 0.00031 30.3 10.8 62 116-177 11-72 (79)
333 PF15290 Syntaphilin: Golgi-lo 86.9 32 0.0007 34.7 15.3 27 74-100 76-102 (305)
334 PRK11546 zraP zinc resistance 86.8 11 0.00025 34.3 11.3 35 44-78 46-80 (143)
335 PF06120 Phage_HK97_TLTM: Tail 86.8 40 0.00086 34.5 19.8 12 44-55 54-65 (301)
336 TIGR00293 prefoldin, archaeal 86.8 4.9 0.00011 35.1 8.9 23 114-136 91-113 (126)
337 PF07889 DUF1664: Protein of u 86.7 23 0.0005 31.7 13.2 10 64-73 48-57 (126)
338 PF03962 Mnd1: Mnd1 family; I 86.5 20 0.00044 34.0 13.5 27 44-70 68-94 (188)
339 cd00584 Prefoldin_alpha Prefol 86.5 20 0.00043 31.4 12.6 34 111-144 89-122 (129)
340 TIGR02231 conserved hypothetic 86.5 12 0.00026 40.7 13.6 35 70-104 68-102 (525)
341 PF10212 TTKRSYEDQ: Predicted 86.2 36 0.00078 37.2 16.5 21 155-175 491-511 (518)
342 PF06160 EzrA: Septation ring 86.1 60 0.0013 35.9 33.7 154 44-198 59-227 (560)
343 PF07058 Myosin_HC-like: Myosi 86.1 12 0.00025 38.3 11.9 79 122-200 6-94 (351)
344 KOG0288 WD40 repeat protein Ti 86.0 42 0.00091 35.7 16.3 57 43-99 11-67 (459)
345 KOG2264 Exostosin EXT1L [Signa 85.8 6.7 0.00014 43.1 10.6 68 131-198 80-147 (907)
346 PF09789 DUF2353: Uncharacteri 85.7 47 0.001 34.3 20.9 28 113-140 76-103 (319)
347 COG2900 SlyX Uncharacterized p 85.7 6.8 0.00015 31.6 8.1 52 141-192 5-56 (72)
348 PF07851 TMPIT: TMPIT-like pro 85.6 11 0.00023 39.0 11.8 59 44-102 3-61 (330)
349 PF07851 TMPIT: TMPIT-like pro 85.6 10 0.00022 39.2 11.6 27 356-382 217-243 (330)
350 PF05008 V-SNARE: Vesicle tran 85.5 16 0.00034 29.1 10.6 58 69-133 21-78 (79)
351 PF14197 Cep57_CLD_2: Centroso 85.4 15 0.00032 29.4 10.1 29 145-173 34-62 (69)
352 TIGR00998 8a0101 efflux pump m 85.4 43 0.00094 33.6 16.9 39 48-86 76-114 (334)
353 cd00890 Prefoldin Prefoldin is 85.4 19 0.0004 31.1 11.8 19 52-70 6-24 (129)
354 PF01920 Prefoldin_2: Prefoldi 85.3 20 0.00044 29.8 12.5 29 165-193 69-97 (106)
355 PF03904 DUF334: Domain of unk 85.2 40 0.00087 33.1 16.6 27 371-402 182-208 (230)
356 PF05791 Bacillus_HBL: Bacillu 85.1 24 0.00052 33.2 13.1 72 111-185 105-176 (184)
357 PF02050 FliJ: Flagellar FliJ 84.7 21 0.00046 29.5 17.4 22 78-99 17-38 (123)
358 PRK10869 recombination and rep 84.7 58 0.0013 35.9 17.8 13 111-123 298-310 (553)
359 PF13747 DUF4164: Domain of un 84.6 22 0.00049 29.7 12.3 47 119-165 35-81 (89)
360 KOG1850 Myosin-like coiled-coi 84.6 53 0.0011 33.9 21.9 86 117-202 237-322 (391)
361 PF08702 Fib_alpha: Fibrinogen 84.5 32 0.00069 31.4 17.0 38 147-184 93-130 (146)
362 PF01442 Apolipoprotein: Apoli 84.5 31 0.00067 31.1 23.6 10 50-59 10-19 (202)
363 PF04102 SlyX: SlyX; InterPro 84.4 6.4 0.00014 31.3 7.6 44 150-193 3-46 (69)
364 cd00890 Prefoldin Prefoldin is 84.4 18 0.0004 31.1 11.3 26 57-82 4-29 (129)
365 PF07798 DUF1640: Protein of u 84.1 36 0.00079 31.7 20.6 23 78-100 49-71 (177)
366 PF06103 DUF948: Bacterial pro 84.0 22 0.00048 29.2 11.1 53 45-97 26-78 (90)
367 PRK02119 hypothetical protein; 83.9 8.9 0.00019 30.9 8.3 46 148-193 6-51 (73)
368 PF14362 DUF4407: Domain of un 83.9 50 0.0011 33.1 15.7 19 117-135 143-161 (301)
369 KOG0982 Centrosomal protein Nu 83.8 66 0.0014 34.4 19.4 21 42-62 247-267 (502)
370 PF06248 Zw10: Centromere/kine 83.7 76 0.0017 35.1 18.9 22 349-370 332-353 (593)
371 PF02403 Seryl_tRNA_N: Seryl-t 83.7 13 0.00028 31.5 9.8 25 162-186 71-95 (108)
372 PRK00409 recombination and DNA 83.6 30 0.00066 39.8 15.5 21 371-391 746-766 (782)
373 PF13747 DUF4164: Domain of un 83.5 25 0.00054 29.4 12.5 27 126-152 35-61 (89)
374 PF11570 E2R135: Coiled-coil r 83.5 33 0.00072 30.8 14.4 43 42-84 12-54 (136)
375 TIGR00293 prefoldin, archaeal 83.4 6.9 0.00015 34.1 8.2 40 113-152 83-122 (126)
376 PF10267 Tmemb_cc2: Predicted 83.4 67 0.0014 34.2 16.8 20 173-192 299-318 (395)
377 PF10205 KLRAQ: Predicted coil 83.4 21 0.00045 30.8 10.7 49 45-100 5-53 (102)
378 PF15456 Uds1: Up-regulated Du 83.3 27 0.00058 31.1 11.8 18 169-186 85-102 (124)
379 PF03904 DUF334: Domain of unk 83.3 48 0.001 32.5 24.6 52 109-160 36-87 (230)
380 PF09738 DUF2051: Double stran 83.2 41 0.00089 34.4 14.7 9 204-212 171-179 (302)
381 PF06705 SF-assemblin: SF-asse 83.2 49 0.0011 32.4 23.5 14 117-130 122-135 (247)
382 PF05546 She9_MDM33: She9 / Md 83.1 47 0.001 32.2 16.6 21 52-72 9-29 (207)
383 PF15290 Syntaphilin: Golgi-lo 83.1 37 0.00081 34.3 13.8 20 118-137 119-138 (305)
384 KOG4302 Microtubule-associated 83.1 89 0.0019 35.4 19.9 13 270-282 256-268 (660)
385 PF06810 Phage_GP20: Phage min 83.0 6.7 0.00015 36.1 8.2 62 46-107 14-82 (155)
386 PF06476 DUF1090: Protein of u 83.0 19 0.00041 31.6 10.7 36 50-101 22-57 (115)
387 PF06248 Zw10: Centromere/kine 83.0 56 0.0012 36.2 17.0 21 42-62 11-31 (593)
388 PF07989 Microtub_assoc: Micro 82.8 16 0.00035 29.6 9.4 17 120-136 47-63 (75)
389 KOG2685 Cystoskeletal protein 82.8 32 0.00069 36.5 13.9 43 52-94 278-320 (421)
390 PF07989 Microtub_assoc: Micro 82.5 17 0.00037 29.5 9.4 28 120-147 4-31 (75)
391 PF15294 Leu_zip: Leucine zipp 82.3 60 0.0013 32.9 20.6 73 121-193 130-211 (278)
392 KOG0998 Synaptic vesicle prote 82.3 3.3 7.2E-05 47.9 7.2 58 43-100 433-490 (847)
393 KOG4593 Mitotic checkpoint pro 82.3 95 0.0021 35.2 21.9 149 42-191 148-301 (716)
394 TIGR03752 conj_TIGR03752 integ 82.2 20 0.00042 38.8 12.3 36 141-176 106-141 (472)
395 COG4477 EzrA Negative regulato 82.2 85 0.0018 34.6 25.3 40 41-82 251-290 (570)
396 COG4487 Uncharacterized protei 82.1 77 0.0017 34.0 20.5 25 357-381 396-420 (438)
397 COG3074 Uncharacterized protei 82.1 25 0.00054 28.3 10.6 24 77-100 8-31 (79)
398 PRK04325 hypothetical protein; 82.0 12 0.00025 30.3 8.3 45 148-192 6-50 (74)
399 PF04871 Uso1_p115_C: Uso1 / p 81.9 39 0.00084 30.4 15.7 27 149-175 82-108 (136)
400 PRK00295 hypothetical protein; 81.9 12 0.00025 29.8 8.1 44 150-193 4-47 (68)
401 TIGR01069 mutS2 MutS2 family p 81.8 28 0.00061 40.0 14.3 21 371-391 735-755 (771)
402 PF07111 HCR: Alpha helical co 81.8 1E+02 0.0022 35.1 18.0 171 42-213 137-311 (739)
403 PF08172 CASP_C: CASP C termin 81.8 26 0.00057 34.7 12.4 43 156-198 84-126 (248)
404 PF09486 HrpB7: Bacterial type 81.7 45 0.00096 31.0 20.6 91 50-140 13-103 (158)
405 PRK11020 hypothetical protein; 81.5 13 0.00029 32.5 8.9 24 43-66 3-26 (118)
406 KOG0240 Kinesin (SMY1 subfamil 81.3 78 0.0017 35.1 16.5 39 58-96 413-451 (607)
407 PRK14011 prefoldin subunit alp 81.3 43 0.00094 30.5 12.7 22 78-99 8-29 (144)
408 KOG2391 Vacuolar sorting prote 81.2 12 0.00027 38.6 10.0 76 103-178 212-287 (365)
409 PF05529 Bap31: B-cell recepto 81.1 13 0.00028 35.0 9.7 23 120-142 158-180 (192)
410 PF10458 Val_tRNA-synt_C: Valy 80.9 12 0.00027 29.2 7.9 56 79-134 3-64 (66)
411 PRK06975 bifunctional uroporph 80.9 54 0.0012 37.0 16.0 24 44-67 345-368 (656)
412 KOG2751 Beclin-like protein [S 80.8 68 0.0015 34.3 15.5 30 390-419 416-445 (447)
413 PLN03229 acetyl-coenzyme A car 80.8 60 0.0013 37.1 15.9 10 172-181 695-704 (762)
414 PF09731 Mitofilin: Mitochondr 80.8 94 0.002 34.2 27.5 186 39-245 245-441 (582)
415 smart00806 AIP3 Actin interact 80.8 85 0.0018 33.6 17.2 64 109-172 173-238 (426)
416 PRK00286 xseA exodeoxyribonucl 80.7 44 0.00096 35.4 14.6 15 47-61 262-276 (438)
417 PF11180 DUF2968: Protein of u 80.6 55 0.0012 31.3 14.7 30 153-182 149-178 (192)
418 PF10368 YkyA: Putative cell-w 80.2 58 0.0012 31.3 18.0 24 45-68 32-55 (204)
419 PF05103 DivIVA: DivIVA protei 80.1 0.97 2.1E-05 39.5 1.6 15 50-64 30-44 (131)
420 PRK10361 DNA recombination pro 80.0 96 0.0021 33.8 20.2 132 64-202 58-195 (475)
421 PF15456 Uds1: Up-regulated Du 79.9 41 0.00089 29.9 11.8 18 45-62 22-39 (124)
422 PF09755 DUF2046: Uncharacteri 79.6 78 0.0017 32.5 30.1 23 48-70 23-45 (310)
423 PRK00736 hypothetical protein; 79.5 14 0.00029 29.4 7.8 46 150-195 4-49 (68)
424 PF10211 Ax_dynein_light: Axon 79.3 58 0.0013 30.9 20.9 31 119-149 123-153 (189)
425 PF04871 Uso1_p115_C: Uso1 / p 79.2 48 0.001 29.8 14.9 21 156-176 82-102 (136)
426 KOG4603 TBP-1 interacting prot 79.1 59 0.0013 30.7 14.3 38 44-81 78-115 (201)
427 PRK02793 phi X174 lysis protei 79.0 17 0.00036 29.2 8.3 47 149-195 6-52 (72)
428 KOG3433 Protein involved in me 79.0 47 0.001 31.7 12.2 90 72-162 73-162 (203)
429 TIGR03545 conserved hypothetic 78.9 39 0.00085 37.4 13.8 12 229-240 300-311 (555)
430 PF05531 NPV_P10: Nucleopolyhe 78.7 11 0.00023 30.8 7.0 53 47-99 6-61 (75)
431 PRK13729 conjugal transfer pil 78.5 10 0.00022 40.9 8.8 16 114-129 74-89 (475)
432 KOG2751 Beclin-like protein [S 78.3 55 0.0012 35.0 13.8 58 128-185 202-259 (447)
433 PF10205 KLRAQ: Predicted coil 77.9 45 0.00098 28.8 11.9 65 116-180 5-69 (102)
434 PRK10803 tol-pal system protei 77.9 12 0.00026 37.3 8.7 13 51-63 39-51 (263)
435 COG5283 Phage-related tail pro 77.7 1.6E+02 0.0035 35.5 18.5 42 113-154 75-116 (1213)
436 KOG0244 Kinesin-like protein [ 77.6 1.5E+02 0.0032 34.7 18.0 20 116-135 548-567 (913)
437 cd00584 Prefoldin_alpha Prefol 77.5 48 0.001 28.9 13.5 19 81-99 7-25 (129)
438 PHA03332 membrane glycoprotein 77.5 1E+02 0.0022 36.7 16.5 54 78-135 896-949 (1328)
439 COG3096 MukB Uncharacterized p 77.4 1.2E+02 0.0026 35.0 16.6 15 49-63 988-1002(1480)
440 KOG2077 JNK/SAPK-associated pr 77.4 70 0.0015 35.5 14.6 109 86-197 328-436 (832)
441 PF07544 Med9: RNA polymerase 77.3 11 0.00023 31.1 6.8 54 43-96 26-82 (83)
442 PF05103 DivIVA: DivIVA protei 77.3 1.6 3.4E-05 38.2 2.0 35 51-85 24-58 (131)
443 TIGR03545 conserved hypothetic 77.0 39 0.00084 37.5 13.0 41 59-100 164-204 (555)
444 COG3352 FlaC Putative archaeal 77.0 30 0.00065 31.9 10.1 52 109-160 44-102 (157)
445 TIGR03495 phage_LysB phage lys 77.0 56 0.0012 29.6 11.8 6 232-237 110-115 (135)
446 PRK13729 conjugal transfer pil 76.9 12 0.00027 40.3 8.9 9 176-184 108-116 (475)
447 KOG4809 Rab6 GTPase-interactin 76.6 1.3E+02 0.0028 33.4 30.5 39 43-81 241-279 (654)
448 PF15272 BBP1_C: Spindle pole 76.6 74 0.0016 30.6 18.1 15 59-73 12-26 (196)
449 PF11180 DUF2968: Protein of u 76.5 73 0.0016 30.5 14.3 73 119-191 108-180 (192)
450 KOG1853 LIS1-interacting prote 76.1 90 0.0019 31.3 21.5 66 113-178 102-167 (333)
451 PF14712 Snapin_Pallidin: Snap 75.8 43 0.00093 27.5 10.5 34 45-78 14-47 (92)
452 PF04912 Dynamitin: Dynamitin 75.5 1.1E+02 0.0024 32.1 21.7 19 52-70 209-227 (388)
453 PF09738 DUF2051: Double stran 75.5 80 0.0017 32.3 14.0 54 47-100 79-132 (302)
454 PF10779 XhlA: Haemolysin XhlA 75.5 15 0.00032 29.3 7.0 36 64-99 11-46 (71)
455 PF06476 DUF1090: Protein of u 75.4 56 0.0012 28.7 13.8 113 12-176 2-114 (115)
456 COG4694 Uncharacterized protei 75.4 1E+02 0.0022 34.3 15.2 109 41-161 388-497 (758)
457 KOG4657 Uncharacterized conser 75.3 88 0.0019 30.8 16.0 103 91-193 19-121 (246)
458 COG1729 Uncharacterized protei 75.2 11 0.00023 37.8 7.5 93 1-94 2-104 (262)
459 PRK00846 hypothetical protein; 75.2 33 0.00073 28.1 9.0 73 140-212 2-74 (77)
460 COG3879 Uncharacterized protei 75.0 15 0.00033 36.4 8.3 89 1-91 13-107 (247)
461 PF08826 DMPK_coil: DMPK coile 74.9 26 0.00056 27.5 7.9 48 126-173 14-61 (61)
462 TIGR01069 mutS2 MutS2 family p 74.8 90 0.002 36.0 15.7 109 47-158 499-607 (771)
463 KOG0811 SNARE protein PEP12/VA 74.7 1E+02 0.0022 31.2 20.9 161 39-200 52-236 (269)
464 PLN02939 transferase, transfer 74.6 1.9E+02 0.0041 34.4 23.8 194 41-241 222-438 (977)
465 PRK01203 prefoldin subunit alp 74.3 50 0.0011 29.7 10.7 94 62-160 3-129 (130)
466 PF02601 Exonuc_VII_L: Exonucl 74.1 67 0.0014 32.4 13.2 149 21-170 119-273 (319)
467 PF06810 Phage_GP20: Phage min 73.8 49 0.0011 30.4 11.0 79 112-190 2-83 (155)
468 KOG2391 Vacuolar sorting prote 73.7 1.2E+02 0.0026 31.7 14.5 139 42-180 222-360 (365)
469 KOG4403 Cell surface glycoprot 73.7 1.4E+02 0.0029 32.3 15.6 120 83-209 238-384 (575)
470 PF10458 Val_tRNA-synt_C: Valy 73.6 33 0.00071 26.8 8.5 52 120-171 1-66 (66)
471 KOG3091 Nuclear pore complex, 73.6 47 0.001 36.1 12.0 112 69-185 337-448 (508)
472 PF05700 BCAS2: Breast carcino 73.6 91 0.002 30.2 18.6 114 75-192 99-216 (221)
473 PF06632 XRCC4: DNA double-str 73.4 97 0.0021 32.3 14.1 84 111-194 132-216 (342)
474 PF03915 AIP3: Actin interacti 73.4 1.1E+02 0.0024 32.8 14.9 149 34-193 140-313 (424)
475 COG3524 KpsE Capsule polysacch 73.3 93 0.002 32.1 13.4 142 54-203 162-305 (372)
476 KOG0244 Kinesin-like protein [ 73.2 65 0.0014 37.5 13.7 159 29-209 451-609 (913)
477 KOG3634 Troponin [Cytoskeleton 73.2 17 0.00036 37.5 8.3 107 110-216 194-303 (361)
478 PF10779 XhlA: Haemolysin XhlA 73.1 16 0.00035 29.0 6.7 51 54-104 1-51 (71)
479 PF12072 DUF3552: Domain of un 72.7 90 0.0019 29.7 18.8 116 76-191 27-143 (201)
480 PF14988 DUF4515: Domain of un 72.6 94 0.002 30.0 21.6 143 44-201 46-199 (206)
481 PRK10636 putative ABC transpor 72.6 28 0.00061 38.9 10.8 91 107-197 547-637 (638)
482 PF12761 End3: Actin cytoskele 72.4 27 0.00058 33.6 9.0 101 33-136 91-194 (195)
483 PRK15178 Vi polysaccharide exp 72.4 1.5E+02 0.0032 32.0 17.1 131 43-174 247-385 (434)
484 PF09787 Golgin_A5: Golgin sub 72.2 1.5E+02 0.0034 32.3 20.2 160 42-202 170-346 (511)
485 PRK00409 recombination and DNA 72.2 1.1E+02 0.0024 35.4 15.6 113 57-169 511-625 (782)
486 PF09403 FadA: Adhesion protei 72.1 73 0.0016 28.5 15.0 90 90-179 23-121 (126)
487 PLN02320 seryl-tRNA synthetase 71.9 61 0.0013 35.5 12.8 129 12-142 34-163 (502)
488 PLN03229 acetyl-coenzyme A car 71.7 1.7E+02 0.0036 33.7 16.3 160 35-195 476-711 (762)
489 PF06705 SF-assemblin: SF-asse 71.7 1E+02 0.0023 30.1 23.3 152 51-202 4-158 (247)
490 PRK05431 seryl-tRNA synthetase 71.5 53 0.0012 35.0 12.2 89 54-142 4-99 (425)
491 PTZ00464 SNF-7-like protein; P 71.5 1E+02 0.0022 29.9 18.3 140 38-195 11-173 (211)
492 COG1566 EmrA Multidrug resista 71.0 1.4E+02 0.003 31.3 14.9 115 51-168 90-207 (352)
493 PF07798 DUF1640: Protein of u 70.9 91 0.002 29.0 20.0 131 48-181 19-154 (177)
494 PF10046 BLOC1_2: Biogenesis o 70.8 64 0.0014 27.3 12.5 88 64-163 12-99 (99)
495 PF04100 Vps53_N: Vps53-like, 70.8 81 0.0017 33.2 13.1 97 65-179 17-113 (383)
496 PRK09174 F0F1 ATP synthase sub 70.7 1E+02 0.0022 29.6 15.7 128 3-155 53-182 (204)
497 PF11853 DUF3373: Protein of u 70.7 5 0.00011 43.5 4.2 58 5-73 2-59 (489)
498 KOG4593 Mitotic checkpoint pro 70.7 2E+02 0.0042 32.8 23.9 177 23-199 33-220 (716)
499 KOG1760 Molecular chaperone Pr 70.6 79 0.0017 28.3 11.0 80 116-195 23-118 (131)
500 COG2900 SlyX Uncharacterized p 70.6 29 0.00064 28.0 7.5 52 49-100 5-56 (72)
No 1
>PRK11637 AmiB activator; Provisional
Probab=99.20 E-value=1.2e-08 Score=107.40 Aligned_cols=64 Identities=11% Similarity=0.120 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 130 KESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (444)
Q Consensus 130 kelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~ 193 (444)
..+..++..+.+++.+..+++....+.+..+..|+....+++..+.+++...+.++..|.+++.
T Consensus 191 ~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~~ 254 (428)
T PRK11637 191 EKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAER 254 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444455555555555555555556666666666666666666666666655443
No 2
>PRK11637 AmiB activator; Provisional
Probab=98.84 E-value=1e-06 Score=92.84 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRS 199 (444)
Q Consensus 125 Ie~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a 199 (444)
++.+....+.+...+.+++.++.+++....+++....+|+....+.+..+..++.+++..+.++..++.+...+.
T Consensus 172 l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~ 246 (428)
T PRK11637 172 IAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLR 246 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555566666666666666666666666666666666666666666555555555555444443
No 3
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.75 E-value=3.2e-06 Score=83.34 Aligned_cols=156 Identities=19% Similarity=0.246 Sum_probs=97.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------------
Q 013359 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLN-------------- 106 (444)
Q Consensus 41 ~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~-------------- 106 (444)
..+..+...+..+|+.|..+++++.+++++.+.++.+.+..|.+++++|.++.+.|.+.+.....-
T Consensus 41 ~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yi 120 (265)
T COG3883 41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYI 120 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 345556666777777777777777777777777777777777777777777777776554333221
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 107 ----AAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (444)
Q Consensus 107 ----~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq 182 (444)
..+.+.+.-.|+.-+..=++--++.++.+..+...|+.....++++.+.+.....+++.....++.+..+++.-+.
T Consensus 121 dvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~ 200 (265)
T COG3883 121 DVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIA 200 (265)
T ss_pred HHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0144455666666666666666777777777777777666666666665555555555555555555555555544
Q ss_pred HHHHHHHHHHHHHh
Q 013359 183 VAEEEMMRAKFEAT 196 (444)
Q Consensus 183 ~~Eeel~kak~E~~ 196 (444)
.+......+..|..
T Consensus 201 ~~aa~~a~~~~e~a 214 (265)
T COG3883 201 ALAAKEASALGEKA 214 (265)
T ss_pred HHHHHHHHhHHHHH
Confidence 44444444444333
No 4
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.51 E-value=2.6e-05 Score=70.69 Aligned_cols=136 Identities=24% Similarity=0.340 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe 122 (444)
++.+.+....+...++.++..+++....++.+|..+...+..++.+|..++.++..+..+... ......+...|+
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee-----~~~~~~~~E~l~ 79 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEE-----SEKRKSNAEQLN 79 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHhHHHHH
Confidence 344555555555555555555555555555555555555555555555555555544332221 122223334566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKV 183 (444)
Q Consensus 123 ~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~ 183 (444)
..|+-|+.+++.....+.....++.++..+...+..++..|+......+.+++++..++..
T Consensus 80 rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 80 RRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666665544
No 5
>PRK09039 hypothetical protein; Validated
Probab=98.49 E-value=4.4e-05 Score=78.57 Aligned_cols=161 Identities=24% Similarity=0.279 Sum_probs=85.8
Q ss_pred hhhhHHHHHHHHHHHHhhhhccCCCCCCCccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 013359 4 SKLVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQ 83 (444)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~ 83 (444)
+-||+..+|++.||..+.+ -+..+++..+.+|++|+++|+++..-+.--......++..|.
T Consensus 24 ~~ll~~~~f~l~~f~~~q~-------------------fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~ 84 (343)
T PRK09039 24 STLLLVIMFLLTVFVVAQF-------------------FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVA 84 (343)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4566666665556655332 234566667777777777777766555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 84 DKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (444)
Q Consensus 84 e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeL 163 (444)
+...++..++..-+.++.-.... ......++.++..+..++...+........++..|..+.+.++.++..++..++..
T Consensus 85 ~l~~~l~~a~~~r~~Le~~~~~~-~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 85 NLRASLSAAEAERSRLQALLAEL-AGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544444322210 11122344455555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013359 164 QKINDEQKSKIRKTERALKVA 184 (444)
Q Consensus 164 e~~~eeqekqI~elE~~Lq~~ 184 (444)
+....+++.+|++++.+|+.+
T Consensus 164 e~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 164 EKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554444
No 6
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.48 E-value=5e-05 Score=74.21 Aligned_cols=121 Identities=17% Similarity=0.262 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK 123 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~ 123 (444)
...+...+..+.+++++++.++..+.+++.++..+++++...+..|.++..+++.++.+++.+++. .++..|+.
T Consensus 23 ~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~------~e~~aL~~ 96 (239)
T COG1579 23 EPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDE------RELRALNI 96 (239)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH------HHHHHHHH
Confidence 344455677777788888888888888888888888888888888888888888888877655332 23333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQ 170 (444)
Q Consensus 124 qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeq 170 (444)
+++.++.++.+++.++..+..+...+++++..+...+..++..+.+.
T Consensus 97 E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 97 EIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333333333333333344444444444444443333333
No 7
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.48 E-value=7.8e-05 Score=77.87 Aligned_cols=82 Identities=17% Similarity=0.283 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHh
Q 013359 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (444)
Q Consensus 123 ~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ei 202 (444)
.+++.|.+.+..+......++++..++.....+...+...+...+.+.++...+++..+..-+..+..+.....++..+|
T Consensus 161 ~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~I 240 (420)
T COG4942 161 ERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEI 240 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45777777777777777777888888888888888888888888888888888888888888888888887777777766
Q ss_pred hh
Q 013359 203 TE 204 (444)
Q Consensus 203 ~~ 204 (444)
+.
T Consensus 241 as 242 (420)
T COG4942 241 AS 242 (420)
T ss_pred HH
Confidence 54
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.37 E-value=8e-05 Score=86.54 Aligned_cols=15 Identities=40% Similarity=0.601 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 013359 44 KIELDQLKSKIRSLE 58 (444)
Q Consensus 44 ~~eL~~l~~ki~~Le 58 (444)
..++..++.++..++
T Consensus 293 ~~~~~~~~~~~~~~~ 307 (1164)
T TIGR02169 293 KEKIGELEAEIASLE 307 (1164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 9
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.34 E-value=0.0001 Score=66.88 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 48 ~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sL 99 (444)
+.|+.+.+.......+++.+++.+++...+++..|..++..+..++.+|+.+
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~ 54 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKL 54 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544444444444444444444444444433
No 10
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.25 E-value=0.00089 Score=66.31 Aligned_cols=157 Identities=17% Similarity=0.239 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH------
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHAR------ 117 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~------ 117 (444)
..+|.++..+...++.+|+.+..+|++....+++++.+|.+...+|..++.+|+.+.+.+.. ..++..-..|
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~--r~~~l~~raRAmq~nG 114 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE--RQELLKKRARAMQVNG 114 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcC
Confidence 34555566666666666666666666666666666666666666666666666655544432 1222222111
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 118 --------------ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKV 183 (444)
Q Consensus 118 --------------i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~ 183 (444)
++++=.++.-+...++.-+.-++.+......++.....++.+++.+..-..+++.....|+.+...
T Consensus 115 ~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e 194 (265)
T COG3883 115 TATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAE 194 (265)
T ss_pred ChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334455556666666677777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhhhhHHh
Q 013359 184 AEEEMMRAKFEATSRSKEL 202 (444)
Q Consensus 184 ~Eeel~kak~E~~~~a~ei 202 (444)
.+.-+..+..+......+.
T Consensus 195 ~~~l~~~~aa~~a~~~~e~ 213 (265)
T COG3883 195 KNALIAALAAKEASALGEK 213 (265)
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 8777777766665554433
No 11
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.22 E-value=0.0001 Score=71.95 Aligned_cols=143 Identities=22% Similarity=0.356 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 53 KIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKES 132 (444)
Q Consensus 53 ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~Lkkel 132 (444)
|+..++.++++.+..+......++..+....+.+..+..|+.+|..+...+..+ +..+..+..++..++...+.....+
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~-eerL~~~~~kL~~~e~~~de~er~~ 80 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERA-EERLEEATEKLEEAEKRADESERAR 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HCCCCHHHHHHHHHHHHHHHHCHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555566666666666666666666665554432 3333333344444444444333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 133 EKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 133 E~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
..+.......+.++..++.++.+.....++.....++...++..++..+..++.....++....
T Consensus 81 k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~ 144 (237)
T PF00261_consen 81 KVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIK 144 (237)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHH
Confidence 3333333333333333333333333333333333333333333333333333333333333333
No 12
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.10 E-value=0.00039 Score=75.16 Aligned_cols=89 Identities=19% Similarity=0.221 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 112 DKAHARADELEKQIDNLKKESE---KQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (444)
Q Consensus 112 ~~ae~~i~eLe~qIe~LkkelE---~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel 188 (444)
..++.++..++.++..+...+. ....+...+..+..+++..+.+....+.++......++..+.+++......+.++
T Consensus 302 ~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l 381 (562)
T PHA02562 302 TKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEEL 381 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Confidence 3344444444444444433333 2222223333444444444444444444444444455555555555444444444
Q ss_pred HHHHHHHhhhhH
Q 013359 189 MRAKFEATSRSK 200 (444)
Q Consensus 189 ~kak~E~~~~a~ 200 (444)
..+..+......
T Consensus 382 ~~l~~~l~~~~~ 393 (562)
T PHA02562 382 AKLQDELDKIVK 393 (562)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 13
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.06 E-value=0.0013 Score=64.43 Aligned_cols=126 Identities=17% Similarity=0.294 Sum_probs=52.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 013359 59 SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNL--KKESEKQQ 136 (444)
Q Consensus 59 sqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~L--kkelE~~~ 136 (444)
.+++.+.-.+++....++.....+...++.+.+++.++.++.+..+.. +..+..+.+++..++..+... .+++++++
T Consensus 17 ~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~-e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~ 95 (239)
T COG1579 17 LEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQL-ESEIQEIRERIKRAEEKLSAVKDERELRALN 95 (239)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 333333333333444444444444444444444444444443333322 233334444444444443222 23344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 137 KEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (444)
Q Consensus 137 ~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~E 185 (444)
.++..++.+...++.++.++...++.+++.+...+.++..++..+..++
T Consensus 96 ~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 96 IEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444443333
No 14
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.05 E-value=0.0019 Score=67.78 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (444)
Q Consensus 141 ~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak 192 (444)
++.++...+...+.|-.+.+..++..+...++++.++...-..+..+|.+++
T Consensus 193 eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 193 EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555555555555554444444
No 15
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.05 E-value=0.0022 Score=62.66 Aligned_cols=61 Identities=21% Similarity=0.362 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 108 AEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIND 168 (444)
Q Consensus 108 ~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~e 168 (444)
+..+..++.++..++..+..|+.++......+..++..-.....+...+..++..|...+.
T Consensus 126 E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lk 186 (237)
T PF00261_consen 126 EQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLK 186 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3445555555555556666665555555555554444433333333333333333333333
No 16
>PRK02224 chromosome segregation protein; Provisional
Probab=98.04 E-value=0.016 Score=66.39 Aligned_cols=125 Identities=20% Similarity=0.388 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~q 124 (444)
.-++.++..+..+..++.+++.++++....+..++..+. ....+..++..++.++..+.. ..+++.....++..++++
T Consensus 468 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~-~~~~l~~l~~~~~~l~~~~~~-~~e~le~~~~~~~~l~~e 545 (880)
T PRK02224 468 ETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVE-AEDRIERLEERREDLEELIAE-RRETIEEKRERAEELRER 545 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHH
Confidence 444556666666666666666666666666655555433 255555666666655544322 234455555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQK 171 (444)
Q Consensus 125 Ie~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqe 171 (444)
+..|+..++........+++...++..++.++..++.+++..+..++
T Consensus 546 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le 592 (880)
T PRK02224 546 AAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE 592 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555555444444444444443334444444333333333333
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.02 E-value=0.001 Score=78.49 Aligned_cols=9 Identities=11% Similarity=0.268 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 013359 371 QVQASVQEM 379 (444)
Q Consensus 371 q~q~~~~~~ 379 (444)
+++...+.+
T Consensus 1021 ~F~~if~~L 1029 (1163)
T COG1196 1021 NFSEIFKEL 1029 (1163)
T ss_pred HHHHHHHHh
Confidence 334333333
No 18
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.98 E-value=0.0014 Score=74.84 Aligned_cols=79 Identities=25% Similarity=0.383 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARA-IEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~-~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eee 187 (444)
.+..+++.++.+.++.+..+++.++.+++.+..++++. +++..++.+.+.+++.|+.+++.++..+..|...++...+.
T Consensus 351 re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~ 430 (1074)
T KOG0250|consen 351 REVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEK 430 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555444443 33444444444444444444444444444444443333333
No 19
>PRK03918 chromosome segregation protein; Provisional
Probab=97.96 E-value=0.0027 Score=72.38 Aligned_cols=15 Identities=7% Similarity=0.253 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 013359 171 KSKIRKTERALKVAE 185 (444)
Q Consensus 171 ekqI~elE~~Lq~~E 185 (444)
...+..++..++.++
T Consensus 679 ~~~~~~l~~~i~~l~ 693 (880)
T PRK03918 679 RAELEELEKRREEIK 693 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 20
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.95 E-value=0.0014 Score=74.78 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 162 KLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 162 eLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
.+...+.+.+.++..++.+++.++..+.++..+.+
T Consensus 391 ~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~ 425 (1074)
T KOG0250|consen 391 ELGSELEERENKLEQLKKEVEKLEEQINSLREELN 425 (1074)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444443333333333
No 21
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.94 E-value=0.0005 Score=74.38 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHID 62 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ 62 (444)
+..+++.++.++..++.++.
T Consensus 179 ~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 179 LNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 22
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.90 E-value=0.01 Score=61.35 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=20.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELK 69 (444)
Q Consensus 39 ~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~ 69 (444)
+...+..++..++.++..++.++..++..++
T Consensus 75 d~~~~~~~l~~l~~~~~~l~a~~~~l~~~~~ 105 (423)
T TIGR01843 75 DATDVEADAAELESQVLRLEAEVARLRAEAD 105 (423)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3345667788888888877777666544443
No 23
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.88 E-value=0.026 Score=61.23 Aligned_cols=163 Identities=16% Similarity=0.247 Sum_probs=87.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 013359 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (444)
Q Consensus 41 ~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~e 120 (444)
..++.+++.+..+...|......++.+......++..++..+.........|..+...+......+ ..+.+.+..+..+
T Consensus 139 ~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l-~~E~~~L~~q~~e 217 (546)
T PF07888_consen 139 QLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEEL-KEERESLKEQLAE 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 346777777777777777777777777777777777777766666666666666666554433332 2333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 121 LEKQIDNLKKESEKQQKEKEALEARAI-------EAE-------KKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEE 186 (444)
Q Consensus 121 Le~qIe~LkkelE~~~~e~~~LEae~~-------elE-------kkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Ee 186 (444)
+...|..|+.++..+.....+.+.... +++ .++.+....+..........+...+.+..++..+++
T Consensus 218 ~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe 297 (546)
T PF07888_consen 218 ARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQE 297 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 444444444444433333322221111 111 222222222222222233455556666677777777
Q ss_pred HHHHHHHHHhhhhHHhhh
Q 013359 187 EMMRAKFEATSRSKELTE 204 (444)
Q Consensus 187 el~kak~E~~~~a~ei~~ 204 (444)
.+...+.+..-++.+++.
T Consensus 298 ~lqaSqq~~~~L~~EL~~ 315 (546)
T PF07888_consen 298 QLQASQQEAELLRKELSD 315 (546)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777666666666644
No 24
>PRK02224 chromosome segregation protein; Provisional
Probab=97.86 E-value=0.0023 Score=73.19 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKG 70 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~ 70 (444)
...+.+++.++..++.+++.+++.+..
T Consensus 205 ~~~l~~~~~~l~el~~~i~~~~~~~~~ 231 (880)
T PRK02224 205 HERLNGLESELAELDEEIERYEEQREQ 231 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333333333
No 25
>PRK03918 chromosome segregation protein; Provisional
Probab=97.83 E-value=0.0033 Score=71.73 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 146 AIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMM 189 (444)
Q Consensus 146 ~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~ 189 (444)
...++..+.+++..+..+...+..++..+..++..++.++..+.
T Consensus 661 ~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~ 704 (880)
T PRK03918 661 YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE 704 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444555555555555444444333
No 26
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.0023 Score=73.38 Aligned_cols=89 Identities=24% Similarity=0.298 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMM 189 (444)
Q Consensus 110 ~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~ 189 (444)
++.++..+++.++..|.++.-.+......+..+....++++..+...+.+++.|.......+....+++..+..+++-+.
T Consensus 908 kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~ 987 (1293)
T KOG0996|consen 908 KVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLK 987 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333333333444444455555555555555555555555555555555555555554444
Q ss_pred HHHHHHhhh
Q 013359 190 RAKFEATSR 198 (444)
Q Consensus 190 kak~E~~~~ 198 (444)
.++.+....
T Consensus 988 E~k~~~~~~ 996 (1293)
T KOG0996|consen 988 EIKKELRDL 996 (1293)
T ss_pred HHHHHHHHH
Confidence 444444433
No 27
>PRK09039 hypothetical protein; Validated
Probab=97.80 E-value=0.0036 Score=64.58 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe 164 (444)
..+....+.+.+|..|+.+++.++.++..+++.+..+|.+..+...+++++.
T Consensus 127 ~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 127 SEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444433
No 28
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.74 E-value=0.0068 Score=67.95 Aligned_cols=163 Identities=21% Similarity=0.328 Sum_probs=86.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH-------------
Q 013359 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAA------------- 108 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~------------- 108 (444)
.++.+|.+++.+.++|+.++..+.+....=.+.|..+|..+.+-...=+.++.+|....+.-.....
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r 536 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATR 536 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhcc
Confidence 4555566666666666666666666555555555555655555555555555555444322111000
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH------------
Q 013359 109 -EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKK-------ISDLSAKLEKLQKIND------------ 168 (444)
Q Consensus 109 -~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkk-------leEle~kveeLe~~~e------------ 168 (444)
+--+.+..+..+|+.++..|+.++...++.+..++.+..++... .+.|...+..++++..
T Consensus 537 ~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtri 616 (697)
T PF09726_consen 537 QECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRI 616 (697)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 11123556777778888888887777777777777776544432 3333333334444443
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhh
Q 013359 169 --EQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTE 204 (444)
Q Consensus 169 --eqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ei~~ 204 (444)
++-..+.+..++++.++..+.+-..|..++..+|++
T Consensus 617 KldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 617 KLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333444445555555555555555444444433
No 29
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.73 E-value=0.0054 Score=67.53 Aligned_cols=150 Identities=13% Similarity=0.188 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH--HHHHHHHHHHHHHHHH
Q 013359 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAA--EQVDKAHARADELEKQ 124 (444)
Q Consensus 47 L~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~--~~i~~ae~~i~eLe~q 124 (444)
...-..++.+|+.+++++..+|.....+++.+...+.+...++.+...+...++........ .-+.++++++..|+..
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~ 402 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQAL 402 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555444332211 1233555666666666
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 125 IDNLKKESEKQQKEKE----ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 125 Ie~LkkelE~~~~e~~----~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
++.-...+..+..+=+ .|..+...++.............-..+.+...+++++...++.-++.+.++..+..
T Consensus 403 v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e 478 (594)
T PF05667_consen 403 VEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELE 478 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555555543333 22223333333333222333333334444444444444444444444444444444
No 30
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.72 E-value=0.0063 Score=74.06 Aligned_cols=58 Identities=26% Similarity=0.369 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (444)
Q Consensus 128 LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~E 185 (444)
++...+.+..++...+.++..+..++.+....+..++..+.+++.+|.++.+.++.-.
T Consensus 1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er 1117 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAER 1117 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444444444444444444444333
No 31
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.69 E-value=0.02 Score=69.04 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 162 KLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (444)
Q Consensus 162 eLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~ 198 (444)
+|+..++....++.+.+.++...+.++..++......
T Consensus 439 eLe~~LenF~aklee~e~qL~elE~kL~~lea~leql 475 (1486)
T PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQF 475 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555554444444444433
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.68 E-value=0.012 Score=63.69 Aligned_cols=52 Identities=15% Similarity=0.265 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqk 101 (444)
++.++...+.+..++.+....+..+..++...+.+++..+.....+...|+.
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~ 192 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQ 192 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555444444444444443
No 33
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.64 E-value=0.02 Score=65.20 Aligned_cols=81 Identities=32% Similarity=0.418 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 118 ADELEKQIDNLKKESEKQQKEK-------EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (444)
Q Consensus 118 i~eLe~qIe~LkkelE~~~~e~-------~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~k 190 (444)
+.+++++|..++.+++....+. ..+.-+..++++.+...++.+..++..++.+...+..+...+...+....+
T Consensus 789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~ 868 (1174)
T KOG0933|consen 789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKK 868 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Confidence 4444444444444444444433 344444444444444444444555555555555555555555555555555
Q ss_pred HHHHHhhh
Q 013359 191 AKFEATSR 198 (444)
Q Consensus 191 ak~E~~~~ 198 (444)
++.+.+..
T Consensus 869 ~~~el~~~ 876 (1174)
T KOG0933|consen 869 AQAELKDQ 876 (1174)
T ss_pred HHHHHHHH
Confidence 55555533
No 34
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=0.016 Score=66.85 Aligned_cols=73 Identities=22% Similarity=0.285 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEA 195 (444)
Q Consensus 123 ~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~ 195 (444)
.++.....+++-.+.++.-|..+.+..-+++.++...+......+.+....+..++..|...+.++.....+.
T Consensus 493 ~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l 565 (1293)
T KOG0996|consen 493 KQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKEL 565 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhH
Confidence 3333333333333333333333344444444444444444444444444444444444444444443333333
No 35
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.59 E-value=0.026 Score=67.72 Aligned_cols=26 Identities=8% Similarity=0.097 Sum_probs=17.6
Q ss_pred chHHHHHHHHHHHHHccccccchHHHHHhhhhhhHHhHHHh
Q 013359 236 AMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVV 276 (444)
Q Consensus 236 ~~~~~~~k~~~~~~~~~~w~~p~~~~~~~k~~p~~~~~w~~ 276 (444)
+=..+..=|+.+|+. ...++.+-|..
T Consensus 1127 ~~~~~~~~~~~~~~~---------------~n~~~~~~w~~ 1152 (1311)
T TIGR00606 1127 LDQAIMKFHSMKMEE---------------INKIIRDLWRS 1152 (1311)
T ss_pred HHHHHHHHHHHHHHH---------------HHHHHHHHHHH
Confidence 333555667777877 56678888874
No 36
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.57 E-value=0.058 Score=51.46 Aligned_cols=155 Identities=17% Similarity=0.271 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELKGKDEV-------VAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHAR 117 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~~k~~e-------Ik~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~ 117 (444)
-+|..++.++..++.++.++..+-..+..- |...+..=.++...|....++|..|...+... ......++.+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~-q~~~r~~~~k 90 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKS-QEQERELERK 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 455556666666666666655554443332 32223333444444555555555554433332 2333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 013359 118 ADELEKQIDNLKKESEKQQK--------EKEALEARAIEAEKKISDLSAKLEKLQKIND----EQKSKIRKTERALKVAE 185 (444)
Q Consensus 118 i~eLe~qIe~LkkelE~~~~--------e~~~LEae~~elEkkleEle~kveeLe~~~e----eqekqI~elE~~Lq~~E 185 (444)
+.+.+.++.+++.++..+.. +.++|..++..++.++.+...++..|+..++ ....++..-......++
T Consensus 91 lk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~ 170 (194)
T PF15619_consen 91 LKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQ 170 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44444444444444433322 1334555555555555555555555544443 33344444444444444
Q ss_pred HHHHHHHHHHhhhhH
Q 013359 186 EEMMRAKFEATSRSK 200 (444)
Q Consensus 186 eel~kak~E~~~~a~ 200 (444)
.++..+..|...+..
T Consensus 171 ~~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 171 EEVKSLQEEIQRLNQ 185 (194)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 37
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.53 E-value=0.089 Score=52.91 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 143 EARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (444)
Q Consensus 143 Eae~~elEkkleEle~kveeLe~~~eeqekqI~elE 178 (444)
..+..++...+..+...++.+...+..++..+.+++
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 333444444444444444444444444444444443
No 38
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.52 E-value=0.28 Score=58.60 Aligned_cols=32 Identities=6% Similarity=0.214 Sum_probs=18.7
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 347 LKPYTKKVVRAYGKFLKSATTYHHQVQASVQE 378 (444)
Q Consensus 347 ~~Py~~~~~~~~~~~~~~a~~~h~q~q~~~~~ 378 (444)
+.=....+...+..|+..-..+++.++.+.++
T Consensus 983 l~e~~~~~~~~i~~f~~~l~~~~r~I~~~s~~ 1014 (1201)
T PF12128_consen 983 LIEQGRNIGNDISNFYGVLEDFDRRIKSQSRR 1014 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33334445555666666666777777666444
No 39
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.49 E-value=0.009 Score=71.55 Aligned_cols=16 Identities=0% Similarity=0.200 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 013359 86 SERIVSLQKELSSLQK 101 (444)
Q Consensus 86 e~~I~eLq~kI~sLqk 101 (444)
..+|.+++.+|+++..
T Consensus 798 ~~ei~~l~~qie~l~~ 813 (1311)
T TIGR00606 798 QMELKDVERKIAQQAA 813 (1311)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444555544443
No 40
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=0.24 Score=53.80 Aligned_cols=151 Identities=20% Similarity=0.298 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKT---QELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARAD 119 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele---~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~ 119 (444)
...+++.++..-..|+.+|++++ +.++...+..+.+.+.++....-...+.++-..+.+++... ..++..-++++.
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l-~~Eie~kEeE~e 311 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEML-KSEIEEKEEEIE 311 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHH
Confidence 44566666666666666666443 23344444444444444444444444444444444444332 333444455555
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 013359 120 ELEKQIDNLKKESEKQ---QKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIR----KTERALKVAEEEMMRAK 192 (444)
Q Consensus 120 eLe~qIe~LkkelE~~---~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~----elE~~Lq~~Eeel~kak 192 (444)
.+..++++|++.++.+ -++.+....+.+.+...++.++.+++.+.+.+-+++.+++ +++..+..+...+.++.
T Consensus 312 ~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~ 391 (581)
T KOG0995|consen 312 KLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIK 391 (581)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666555555 2334455666667777777777777777666665544443 33444444444444444
Q ss_pred HH
Q 013359 193 FE 194 (444)
Q Consensus 193 ~E 194 (444)
.-
T Consensus 392 l~ 393 (581)
T KOG0995|consen 392 LG 393 (581)
T ss_pred HH
Confidence 43
No 41
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.44 E-value=0.036 Score=62.80 Aligned_cols=99 Identities=21% Similarity=0.331 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 013359 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQI 125 (444)
Q Consensus 46 eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qI 125 (444)
.|+-++-.+...+...+-+.++++.+...+..++..+.+++..|..++.+...++.++... ....+..+.+|..|...|
T Consensus 323 hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l-~d~~d~~e~ki~~Lq~ki 401 (775)
T PF10174_consen 323 HIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDL-RDMLDKKERKINVLQKKI 401 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444455555555555555555554444444332 233344444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013359 126 DNLKKESEKQQKEKEALEAR 145 (444)
Q Consensus 126 e~LkkelE~~~~e~~~LEae 145 (444)
+.|...+.....++.....+
T Consensus 402 e~Lee~l~ekd~ql~~~k~R 421 (775)
T PF10174_consen 402 ENLEEQLREKDRQLDEEKER 421 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55544444444444433333
No 42
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.43 E-value=0.11 Score=59.48 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=6.7
Q ss_pred HHHHHHHHcccccc
Q 013359 243 KALEKKAQAGKWVQ 256 (444)
Q Consensus 243 k~~~~~~~~~~w~~ 256 (444)
+.-+.+..-+.|++
T Consensus 927 k~v~~l~~k~~wi~ 940 (1174)
T KOG0933|consen 927 KEVEKLLKKHEWIG 940 (1174)
T ss_pred HHHHHHHHhccchh
Confidence 33444444455554
No 43
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.42 E-value=0.1 Score=52.43 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 146 AIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (444)
Q Consensus 146 ~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~E 185 (444)
+..+...+.++...++.++..++.++.....++..+..++
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 4444445555566666666666666666666666665554
No 44
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.42 E-value=0.013 Score=64.50 Aligned_cols=166 Identities=22% Similarity=0.303 Sum_probs=99.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHH
Q 013359 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETL--NAAEQVDKAHARA 118 (444)
Q Consensus 41 ~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~--~~~~~i~~ae~~i 118 (444)
..-..++++++.+|+.+..++.+++.+++.....+++++..+.+......+++.++.-..+-... ..++.+.+++.-+
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v 403 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALV 403 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999998754332222 2334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 013359 119 DELEKQIDNLKKESEKQQKEK-------------------------EALEARAIEAEKKISDLSAKLEKLQKIND----- 168 (444)
Q Consensus 119 ~eLe~qIe~LkkelE~~~~e~-------------------------~~LEae~~elEkkleEle~kveeLe~~~e----- 168 (444)
..-...+..|..+-+..+.-+ ..+..+..+++.++..-+.....|....+
T Consensus 404 ~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 404 EASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 444444333332222221111 11111122222222222222222222222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhh
Q 013359 169 ----EQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVH 206 (444)
Q Consensus 169 ----eqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ei~~~~ 206 (444)
.+-.+|-++-..|...+++|.+.-.+...+++++....
T Consensus 484 ~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~ 525 (594)
T PF05667_consen 484 VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLT 525 (594)
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666667777777777777777777775533
No 45
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.42 E-value=0.0097 Score=66.71 Aligned_cols=98 Identities=14% Similarity=0.254 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe 122 (444)
|..++..|+.+|...+..=+|+.++|...+..=..+...|.++..+...|+.++..|......+ ...+..++.++.+..
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~D-Kq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQD-KQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4455555666666666666666666555555444555556666666666666666554333322 244567788888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013359 123 KQIDNLKKESEKQQKEKEA 141 (444)
Q Consensus 123 ~qIe~LkkelE~~~~e~~~ 141 (444)
.+...++++|...++.+.+
T Consensus 502 ~~R~~lEkQL~eErk~r~~ 520 (697)
T PF09726_consen 502 RQRASLEKQLQEERKARKE 520 (697)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 8888888777776655443
No 46
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=97.40 E-value=0.23 Score=57.50 Aligned_cols=56 Identities=7% Similarity=0.176 Sum_probs=38.7
Q ss_pred HhhcCcchHhHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhcc
Q 013359 333 ATVAKPHVDNVRVALKPYTKKVVRAYGKFLKSATTYHHQVQASVQEMLKKHELTSPLAT 391 (444)
Q Consensus 333 ~~~~~p~~~~~~~~~~Py~~~~~~~~~~~~~~a~~~h~q~q~~~~~~~~~~e~~~~~a~ 391 (444)
++-+..-++.+..-.-|+...+...+..++..+..+...+|+.++ .+-+++.-+++
T Consensus 645 k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~---~q~~~~~l~~~ 700 (1041)
T KOG0243|consen 645 KKDSESCLEVINSSITSSINELESMLETIANTADDLLQNISSRLS---NQQEILSLFAN 700 (1041)
T ss_pred hhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhHHHHhhH
Confidence 333444445666667777888888899999999999888888777 34444455544
No 47
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.016 Score=64.38 Aligned_cols=64 Identities=20% Similarity=0.258 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLN 106 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~ 106 (444)
+..+++.|+-++.+|..++.++.-+|.....+|......++-.-.+|..|+.+|..+|.++..+
T Consensus 442 l~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l 505 (1118)
T KOG1029|consen 442 LQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKL 505 (1118)
T ss_pred HHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666677776666666666777777777777777777777777777777777666543
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.38 E-value=0.06 Score=65.09 Aligned_cols=25 Identities=16% Similarity=0.000 Sum_probs=11.3
Q ss_pred hccCCcchHHHHHHHHHHHHHcccc
Q 013359 230 NAHGKPAMDVAIQKALEKKAQAGKW 254 (444)
Q Consensus 230 ~~hg~p~~~~~~~k~~~~~~~~~~w 254 (444)
...|+---..+...+.++...+..|
T Consensus 484 ~~~Gkv~~~~a~~~~~~~~~~~~~~ 508 (1486)
T PRK04863 484 KIAGEVSRSEAWDVARELLRRLREQ 508 (1486)
T ss_pred HHcCCcCHHHHHHHHHHHHHHhHHH
Confidence 3444444444444444444443333
No 49
>PRK11281 hypothetical protein; Provisional
Probab=97.36 E-value=0.025 Score=66.44 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHH---HHHHHHHhcCC
Q 013359 352 KKVVRAYGKFLKSATTYH---HQVQA---SVQEMLKKHEL 385 (444)
Q Consensus 352 ~~~~~~~~~~~~~a~~~h---~q~q~---~~~~~~~~~e~ 385 (444)
+.....+...+..+.+.. +|+.. .++++|.+|-|
T Consensus 417 ~~l~~~~~~~l~~~~~l~~~q~Ql~~~~~~l~~~L~~~lf 456 (1113)
T PRK11281 417 DQLNKQLNNQLNLAINLQLNQQQLLSVSDSLQSTLTQQIF 456 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445556666666666663 55543 45566666544
No 50
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.33 E-value=0.044 Score=56.06 Aligned_cols=74 Identities=23% Similarity=0.360 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhh
Q 013359 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE----EEMMRAKFEATSR 198 (444)
Q Consensus 125 Ie~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~E----eel~kak~E~~~~ 198 (444)
+..++.++.....+++....++.+++.++..+...++.+...+.++..+|.++++.+.... .++.+++.+...+
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444455555555555555555554443322 4455555554433
No 51
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.32 E-value=0.033 Score=57.69 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013359 172 SKIRKTERALKVAEEEMMRAKFE 194 (444)
Q Consensus 172 kqI~elE~~Lq~~Eeel~kak~E 194 (444)
..+.+++.++..++..+..++..
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~~ 268 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARDR 268 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 52
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.27 E-value=0.31 Score=50.66 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=18.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 63 EKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 63 ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
..++++....+|-+..+....+.......-+.++..++
T Consensus 106 ~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t 143 (499)
T COG4372 106 AARSELQKARQEREAVRQELAAARQNLAKAQQELARLT 143 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33335554444444455555555555444444444443
No 53
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.27 E-value=0.45 Score=52.38 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 148 EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 148 elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
+++..+.++...++.++....+....+..+......+...+.+.+....
T Consensus 380 el~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~ 428 (569)
T PRK04778 380 ELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH 428 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444333
No 54
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.27 E-value=0.76 Score=54.96 Aligned_cols=98 Identities=19% Similarity=0.357 Sum_probs=55.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhHHHHH
Q 013359 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-------TLNAAEQV 111 (444)
Q Consensus 39 ~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~-------s~~~~~~i 111 (444)
+...++.++..++..+..+.....+++..+......++.....+.+....+.....++..+++.. ....++..
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 680 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERK 680 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44467777777777777777666666666666666666665555555555555555554444443 33333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 112 DKAHARADELEKQIDNLKKESEKQQ 136 (444)
Q Consensus 112 ~~ae~~i~eLe~qIe~LkkelE~~~ 136 (444)
..++.++..++.++..++++++...
T Consensus 681 ~~~~~~l~~l~~~l~~~~~e~~~~~ 705 (1201)
T PF12128_consen 681 EQIEEQLNELEEELKQLKQELEELL 705 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554444443
No 55
>PRK01156 chromosome segregation protein; Provisional
Probab=97.24 E-value=0.036 Score=63.77 Aligned_cols=43 Identities=9% Similarity=0.134 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 146 AIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (444)
Q Consensus 146 ~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel 188 (444)
...++.....+...++.+...+..+...+..+..++..+++++
T Consensus 676 ~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel 718 (895)
T PRK01156 676 INDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRI 718 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3444444444444444444444444444444444444444333
No 56
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=97.23 E-value=0.18 Score=49.23 Aligned_cols=116 Identities=14% Similarity=0.234 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Q 013359 76 AQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQ---------QKEKEALEARA 146 (444)
Q Consensus 76 k~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~---------~~e~~~LEae~ 146 (444)
.+++..|.+....+.+++..+...+..+... ......+...+.++..+++.+...+... ......++++.
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~-~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~ 159 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLIEI-QTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAEL 159 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHH
Confidence 3344444444444444444444444333332 2233334444444444444444443331 22233444444
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 147 IEAEKKISDLSAKLEKLQ-------KINDEQKSKIRKTERALKVAEEEMMRAK 192 (444)
Q Consensus 147 ~elEkkleEle~kveeLe-------~~~eeqekqI~elE~~Lq~~Eeel~kak 192 (444)
.-+..++..++..+.... ...+....++..++..++.++..++...
T Consensus 160 ~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 160 AALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKR 212 (240)
T ss_pred HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444443333 3344444444444444444444444333
No 57
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.22 E-value=0.2 Score=47.86 Aligned_cols=64 Identities=28% Similarity=0.360 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 133 EKQQKEKEALEARAIEAEKKISDLSAKLEKLQ----KINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 133 E~~~~e~~~LEae~~elEkkleEle~kveeLe----~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
+.+...++.++.++.+.+.++..++..++-.+ ..+..-..+..++...++.+++++..+.....
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433222 22223344444444455555555544444443
No 58
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.21 E-value=0.22 Score=50.29 Aligned_cols=52 Identities=27% Similarity=0.404 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIND 168 (444)
Q Consensus 117 ~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~e 168 (444)
.+.++-++++.++.....+...+.++-.++++.-.++.++-.+.+.+.+..+
T Consensus 159 ~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkead 210 (294)
T COG1340 159 KLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEAD 210 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555554444444444443333333333333333
No 59
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.21 E-value=0.042 Score=60.32 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHI 61 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi 61 (444)
...+++.++.+|......+
T Consensus 254 i~~~i~~l~~~i~~~~~~l 272 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALL 272 (569)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4456666665555543333
No 60
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.20 E-value=0.067 Score=58.24 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=6.8
Q ss_pred HHHHHHHHhhhhhHHHHH
Q 013359 59 SHIDEKTQELKGKDEVVA 76 (444)
Q Consensus 59 sqi~ele~eI~~k~~eIk 76 (444)
++.......|..+..++.
T Consensus 242 ~kL~~a~~~l~~Lq~El~ 259 (522)
T PF05701_consen 242 SKLAEASAELESLQAELE 259 (522)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 61
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=97.18 E-value=0.072 Score=47.53 Aligned_cols=65 Identities=26% Similarity=0.443 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKE----ALEARAIEAEKKISDLSAKLEKLQKINDEQKSK 173 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~----~LEae~~elEkkleEle~kveeLe~~~eeqekq 173 (444)
+.+..++.++..++.++..|+...+.....+. .++.+...+++.+.++..++++|...+.-+-.+
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Q 127 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQ 127 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555554444333 344445555555555555555555444443333
No 62
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.15 E-value=0.17 Score=48.41 Aligned_cols=104 Identities=22% Similarity=0.338 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 013359 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID 126 (444)
Q Consensus 47 L~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe 126 (444)
|..++.+|.++..+....+..+.+...+...+..-+.....++.+|+.++...++.- ..+..++.++..++.++.
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK-----~~L~~~k~rl~~~ek~l~ 103 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDK-----QSLQNLKARLKELEKELK 103 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555566666666666666665554221 223456667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 127 NLKKESEKQQKEKEALEARAIEAEKKISD 155 (444)
Q Consensus 127 ~LkkelE~~~~e~~~LEae~~elEkkleE 155 (444)
.|+-+-+.+......++.+..++..+...
T Consensus 104 ~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 104 DLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777677666666666654443
No 63
>PRK01156 chromosome segregation protein; Provisional
Probab=97.13 E-value=0.11 Score=59.90 Aligned_cols=12 Identities=8% Similarity=0.135 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHh
Q 013359 371 QVQASVQEMLKK 382 (444)
Q Consensus 371 q~q~~~~~~~~~ 382 (444)
.++....+++..
T Consensus 761 ~~~~~~~e~~~~ 772 (895)
T PRK01156 761 AMTSLTRKYLFE 772 (895)
T ss_pred HHHHHHHHHHHH
Confidence 344455555433
No 64
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=97.12 E-value=0.0097 Score=56.41 Aligned_cols=63 Identities=27% Similarity=0.410 Sum_probs=12.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013359 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (444)
Q Consensus 40 ~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK 102 (444)
..++...+..++.++..+.....++.+++.+...++..++..+...+..|.++..++..|+.+
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~ 131 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEK 131 (194)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777888888888888888888877777777777777777777777777766533
No 65
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.08 E-value=0.29 Score=50.92 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 154 SDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 154 eEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
+.....++.....+......|.+.+++++.+|.+...++.|..
T Consensus 234 ~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva 276 (499)
T COG4372 234 QQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVA 276 (499)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444455555555555555555544444
No 66
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.08 E-value=0.41 Score=48.36 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI 96 (444)
+.+.+++++++..+..++.++..+-+++.+++.++...-.+.+..+++|-..+
T Consensus 40 ~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~ 92 (294)
T COG1340 40 AEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEY 92 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333333333333333333333333333333333333
No 67
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.07 E-value=0.11 Score=56.64 Aligned_cols=76 Identities=22% Similarity=0.298 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 121 Le~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
+...+.....+|+..+..+.....+...+...+..+...++.....+..++.+.......+..++.++.+.+.++.
T Consensus 279 ~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLe 354 (522)
T PF05701_consen 279 LQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELE 354 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Confidence 3333444445555555555544444444444444444444444444444444444444444444444444444443
No 68
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.07 E-value=0.15 Score=55.35 Aligned_cols=151 Identities=15% Similarity=0.189 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH------HHHHHHHHHHHHHHHH
Q 013359 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNA------AEQVDKAHARADELEK 123 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~------~~~i~~ae~~i~eLe~ 123 (444)
+..++..++++-.+++..|+ ++......++-+.+.++.|++++.-.++=.+... +..+...+.++..-+.
T Consensus 233 i~~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEe 308 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEE 308 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444 2333344455555555555555544443222221 1445555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 013359 124 QIDNLKKESEKQQKEKEALEA---RAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSK 200 (444)
Q Consensus 124 qIe~LkkelE~~~~e~~~LEa---e~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ 200 (444)
+++.|+.+.+.++..++.+.= +......+.+++...+..++.+++.+.+.+-+++..++..-.++...-.+...+..
T Consensus 309 E~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~ 388 (581)
T KOG0995|consen 309 EIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIR 388 (581)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665554432 23333446667777888888888888888888888888888888887777777766
Q ss_pred Hhhh
Q 013359 201 ELTE 204 (444)
Q Consensus 201 ei~~ 204 (444)
.+.-
T Consensus 389 ~i~l 392 (581)
T KOG0995|consen 389 RIKL 392 (581)
T ss_pred HHHH
Confidence 6643
No 69
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.04 E-value=0.07 Score=60.51 Aligned_cols=109 Identities=21% Similarity=0.246 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 82 IQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLE 161 (444)
Q Consensus 82 I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kve 161 (444)
+.....++.....+|..++.++... +++-.+....|..+...+...+...+.+..+++.|..++.+....++.....++
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~-~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~ 367 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETL-EEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIE 367 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443322 222222244444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 162 KLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (444)
Q Consensus 162 eLe~~~eeqekqI~elE~~Lq~~Eeel~ka 191 (444)
.++.....+...|.++.+.+...+..+..+
T Consensus 368 ~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~L 397 (775)
T PF10174_consen 368 KLQEEKSRLQGEIEDLRDMLDKKERKINVL 397 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443333333333333333333333333
No 70
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=97.04 E-value=0.28 Score=52.38 Aligned_cols=28 Identities=7% Similarity=0.036 Sum_probs=16.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013359 41 SPLKIELDQLKSKIRSLESHIDEKTQEL 68 (444)
Q Consensus 41 ~~l~~eL~~l~~ki~~Lesqi~ele~eI 68 (444)
..+..+++.++.++..++.++..+...+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~rL~a~~ 120 (457)
T TIGR01000 93 GNEENQKQLLEQQLDNLKDQKKSLDTLK 120 (457)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666665555554443
No 71
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.01 E-value=0.17 Score=61.45 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAE 150 (444)
Q Consensus 118 i~eLe~qIe~LkkelE~~~~e~~~LEae~~elE 150 (444)
+..|.++|.+|+.++...+..++++..+...+.
T Consensus 1309 ~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1309 YEKLKSEISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444433
No 72
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.00 E-value=0.5 Score=54.99 Aligned_cols=155 Identities=21% Similarity=0.261 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe 122 (444)
|..+-...+++-..++.+.+++...+++-+......++.|++....|...++-|..++..... .+.....+..++.+|+
T Consensus 1547 L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~-aE~~~~~a~q~~~eL~ 1625 (1758)
T KOG0994|consen 1547 LQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAA-AEKLATSATQQLGELE 1625 (1758)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 333334444555555555555555555555555556666666666666666666666654443 2455556666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (444)
Q Consensus 123 ~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~ 198 (444)
..++.|+...-....+....+..+..+.....+.+...+.|++..+....-++.--+..+..++....++.|+..+
T Consensus 1626 ~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~L 1701 (1758)
T KOG0994|consen 1626 TRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKL 1701 (1758)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 7777776666555555555555555554444455555554444444444444333333333443344444444433
No 73
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.99 E-value=0.12 Score=52.98 Aligned_cols=81 Identities=31% Similarity=0.355 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLKKESEKQ----QKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~LkkelE~~----~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel 188 (444)
.+.++...|..++..|+...... ..++..+..++.+....++.....+.+++.++.+++..++++..+.+.+..+|
T Consensus 181 ~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 181 KLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333222 22333444444444444444444444555555555555555555555554444
Q ss_pred HHHHH
Q 013359 189 MRAKF 193 (444)
Q Consensus 189 ~kak~ 193 (444)
..++.
T Consensus 261 ~e~~~ 265 (325)
T PF08317_consen 261 AEAEK 265 (325)
T ss_pred HHHHH
Confidence 44443
No 74
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.21 Score=56.17 Aligned_cols=43 Identities=28% Similarity=0.360 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEK 151 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEk 151 (444)
+++..+..+...+..+...+.+++++.+..+..+.+...+.+.
T Consensus 737 eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~ 779 (970)
T KOG0946|consen 737 EELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAEL 779 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhc
Confidence 5556666667777777777777777777776666666554444
No 75
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.97 E-value=0.1 Score=59.09 Aligned_cols=127 Identities=22% Similarity=0.297 Sum_probs=83.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 013359 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (444)
Q Consensus 41 ~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~e 120 (444)
.+.......+..++..+++.+..++..+..-.+++......+.+.+..|.+|+.++.+. ++.....+.++...+.....
T Consensus 585 ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~-keS~s~~E~ql~~~~e~~e~ 663 (769)
T PF05911_consen 585 EADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESA-KESNSLAETQLKAMKESYES 663 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33445556677788888888888888888888888888888888888888888888866 45555455555555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIND 168 (444)
Q Consensus 121 Le~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~e 168 (444)
++.+...++.+++.+...+..|+.++..-.....++..+..+|+.++.
T Consensus 664 le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~ 711 (769)
T PF05911_consen 664 LETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELE 711 (769)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence 666666556666666555555555555544444444444444444444
No 76
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.95 E-value=0.29 Score=44.43 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013359 120 ELEKQIDNLKKESEKQQKEKE 140 (444)
Q Consensus 120 eLe~qIe~LkkelE~~~~e~~ 140 (444)
.+..+.+.|.+.+...+..+.
T Consensus 77 ~l~sEk~~L~k~lq~~q~kv~ 97 (140)
T PF10473_consen 77 TLRSEKENLDKELQKKQEKVS 97 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 77
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.11 Score=58.03 Aligned_cols=55 Identities=7% Similarity=0.099 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKET 104 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s 104 (444)
-+++++++..+++.-...|--...-.++++.+++-++.+++.|+.+|.+..-++.
T Consensus 414 Erar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~t 468 (1118)
T KOG1029|consen 414 ERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDIT 468 (1118)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccc
Confidence 3455555555555555555555555555555555566666666666655544443
No 78
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.89 E-value=1.1 Score=50.06 Aligned_cols=129 Identities=18% Similarity=0.338 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHH
Q 013359 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAA-EQVDKAHARADELEKQIDNL 128 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~-~~i~~ae~~i~eLe~qIe~L 128 (444)
++.+...++.++..+..++..+.++....-..|.+++..|.+|.+++............ +....++.++..|..++++|
T Consensus 20 lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L 99 (617)
T PF15070_consen 20 LKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESL 99 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666666666666666666666666665543321111111 22235666777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 129 KKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (444)
Q Consensus 129 kkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE 178 (444)
..++..+..+...+..-..+.+.++.+++..++.++....+..+.+..++
T Consensus 100 ~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lq 149 (617)
T PF15070_consen 100 EEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQ 149 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77777666666655554555566666666666665555554444444433
No 79
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.86 E-value=0.019 Score=54.49 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 148 EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (444)
Q Consensus 148 elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~E 185 (444)
.++..+.+....++.++++...++.+...++.++..++
T Consensus 134 ~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 134 DLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 80
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.80 E-value=0.27 Score=50.21 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhh
Q 013359 144 ARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE----EEMMRAKFEATSR 198 (444)
Q Consensus 144 ae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~E----eel~kak~E~~~~ 198 (444)
.+..+++.++.++...+++...++.+...+|++++..+.... .++.+++.....+
T Consensus 225 ~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~L 283 (312)
T smart00787 225 KKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLL 283 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444443333 4455555544433
No 81
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.64 Score=52.07 Aligned_cols=95 Identities=22% Similarity=0.221 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhh--
Q 013359 129 KKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVH-- 206 (444)
Q Consensus 129 kkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ei~~~~-- 206 (444)
.+++.....-++.......++......+...++..+.+....+..+.+....+........++++|...+..++.+++
T Consensus 544 ~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 544 IKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333333333333344444444444445555555555555555555555555555555555566666666666664443
Q ss_pred --ccCCChhHHHHHHhhhH
Q 013359 207 --SAWLPPWLAVHLLQCQS 223 (444)
Q Consensus 207 --g~wl~Pw~~~~~~~~~~ 223 (444)
|+=--|-|+.++..|+.
T Consensus 624 ~~~~s~d~~L~EElk~yK~ 642 (698)
T KOG0978|consen 624 ESGASADEVLAEELKEYKE 642 (698)
T ss_pred cccccccHHHHHHHHHHHh
Confidence 22234556666665555
No 82
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=96.77 E-value=0.49 Score=46.22 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKG 70 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~ 70 (444)
..+|......+..++..+...++.+..
T Consensus 84 eq~l~~~~~~L~~~q~~l~~~~~~l~~ 110 (240)
T PF12795_consen 84 EQRLSQEQAQLQELQEQLQQENSQLIE 110 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 83
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.76 E-value=0.39 Score=54.45 Aligned_cols=43 Identities=12% Similarity=0.307 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEK 151 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEk 151 (444)
..+++.++....|+.++++++.+....+...+.+...++.++.
T Consensus 459 ~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~ 501 (980)
T KOG0980|consen 459 QSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQ 501 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344555555555555555555544443333333333333333
No 84
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.76 E-value=0.2 Score=57.30 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 152 KISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 152 kleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
+..++..+.+++.....++|..-..+...+..+++.+.+.+..+.
T Consensus 454 ~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~ 498 (1200)
T KOG0964|consen 454 ENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLR 498 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555556666666666666666666666666555
No 85
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.75 E-value=0.078 Score=60.55 Aligned_cols=146 Identities=23% Similarity=0.299 Sum_probs=79.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH-----------
Q 013359 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAA----------- 108 (444)
Q Consensus 40 ~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~----------- 108 (444)
...+..++..++.+|..|+.++.+....+-...++|..++..|..+.++|.++..+-.+.---...+..
T Consensus 172 ~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ 251 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTT 251 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCc
Confidence 345666666666666666666666666666666666666666666655555555543332211111110
Q ss_pred --HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 109 --EQ---VDKAHARADELEKQIDNLKKESEKQQKEKEALEARA--IEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (444)
Q Consensus 109 --~~---i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~--~elEkkleEle~kveeLe~~~eeqekqI~elE~~L 181 (444)
+. ++-.+.++.+|+..-.-|..+.+.++.++..++++- .++|.++-.+++++++++...+-.+.+++++....
T Consensus 252 ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEn 331 (1195)
T KOG4643|consen 252 YKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEEN 331 (1195)
T ss_pred cchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 11 122345555555554445555556666666555554 55666666666666666666666655555555554
Q ss_pred HHHH
Q 013359 182 KVAE 185 (444)
Q Consensus 182 q~~E 185 (444)
..++
T Consensus 332 stLq 335 (1195)
T KOG4643|consen 332 STLQ 335 (1195)
T ss_pred HHHH
Confidence 4443
No 86
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.74 E-value=0.49 Score=55.86 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 136 QKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 136 ~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
+.+...++.+...++......+...+-.+...+....+++.++..++.+++.++....+..
T Consensus 179 qae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~s 239 (1109)
T PRK10929 179 QAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREA 239 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555566666666666666666666665444333
No 87
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.73 E-value=0.79 Score=50.85 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAE 150 (444)
Q Consensus 115 e~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elE 150 (444)
.+.|..++.++.+-++.+-......+.+++++..++
T Consensus 522 ~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~q 557 (961)
T KOG4673|consen 522 QETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQ 557 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443333
No 88
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.71 E-value=0.43 Score=54.12 Aligned_cols=124 Identities=19% Similarity=0.236 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 013359 49 QLKSKIRSLESHIDEKTQEL---KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQI 125 (444)
Q Consensus 49 ~l~~ki~~Lesqi~ele~eI---~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qI 125 (444)
+|+.+++++.......++.. ++........++.+++....+.+|..+=..+-.|...+ ..+...++.-+.+++++.
T Consensus 390 qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di-~kQle~~~~s~~~~~~~~ 468 (980)
T KOG0980|consen 390 QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDI-QKQLESAEQSIDDVEEEN 468 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHH
Confidence 45555555555444444443 44444444455555555555555444443333333332 344444555555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 126 DNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSK 173 (444)
Q Consensus 126 e~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekq 173 (444)
..|...++........++.+.++..+.++.++.++..+..++++++..
T Consensus 469 ~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 469 TNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666665555555555544444
No 89
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.70 E-value=0.34 Score=49.55 Aligned_cols=81 Identities=23% Similarity=0.246 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLKKESEKQ----QKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~LkkelE~~----~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel 188 (444)
.+.++...|+.++..|++..+.+ ..++..+.+++.+....+.....++++++.++.+....|++...+...++.+|
T Consensus 176 ~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 176 KLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333 12333444444444444444444555555555555555555555555555555
Q ss_pred HHHHH
Q 013359 189 MRAKF 193 (444)
Q Consensus 189 ~kak~ 193 (444)
..++.
T Consensus 256 ~~ae~ 260 (312)
T smart00787 256 AEAEK 260 (312)
T ss_pred HHHHH
Confidence 54444
No 90
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.69 E-value=0.94 Score=51.11 Aligned_cols=161 Identities=20% Similarity=0.296 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhHH----------
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK-----ETLNAA---------- 108 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK-----~s~~~~---------- 108 (444)
-.+|..|++++.+++.++..+.+.+.+....+..-...+.+....|..|-..++.+..- ..+...
T Consensus 264 ~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d 343 (717)
T PF09730_consen 264 LSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHED 343 (717)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccc
Confidence 35566788888889989888888888888888888888888888888888888777651 000000
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 109 --------EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARA----IEAEKKISDLSAKLEKLQKINDEQKSKIRK 176 (444)
Q Consensus 109 --------~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~----~elEkkleEle~kveeLe~~~eeqekqI~e 176 (444)
......+.+...+..++..|+.++..++.+...++... ..++..+..+..++..+++...+-+.++..
T Consensus 344 ~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~ 423 (717)
T PF09730_consen 344 GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISE 423 (717)
T ss_pred cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 11234556677777777777777777766655544433 333455566666666666644444445555
Q ss_pred HHHHHHHH-------HHHHHHHHHHHhhhhHHhhh
Q 013359 177 TERALKVA-------EEEMMRAKFEATSRSKELTE 204 (444)
Q Consensus 177 lE~~Lq~~-------Eeel~kak~E~~~~a~ei~~ 204 (444)
++.++..+ ...+..++.++...+.+++.
T Consensus 424 LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAq 458 (717)
T PF09730_consen 424 LEKELRALSKLAGESQGSLNSAQDELVTFSEELAQ 458 (717)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444 45566666666666666643
No 91
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.67 E-value=0.56 Score=50.29 Aligned_cols=61 Identities=8% Similarity=0.161 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQEL--------KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI--------~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~ 103 (444)
+..++..++.++.+.+.++.+..++- ....+.+.+++..+.+.+.++.+++..++.+++.+
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l 234 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQL 234 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666666666666665543221 12334555666666666666666666666665543
No 92
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.67 E-value=0.71 Score=51.55 Aligned_cols=45 Identities=11% Similarity=0.310 Sum_probs=26.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 013359 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDK 85 (444)
Q Consensus 41 ~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~ 85 (444)
..+..+++.++.++..++.++..+.+++...+.++...+..+.+.
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l 249 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESL 249 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666555555555555433
No 93
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.65 E-value=0.65 Score=44.24 Aligned_cols=56 Identities=16% Similarity=0.241 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sL 99 (444)
..+++..+-++..+..++.+.++.-.+....++.+++.-.+.+..+..+..++...
T Consensus 17 eeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEA 72 (205)
T KOG1003|consen 17 EEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEA 72 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555555555555555555555555433
No 94
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.63 E-value=0.38 Score=53.51 Aligned_cols=101 Identities=20% Similarity=0.291 Sum_probs=57.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH--HHHHHHHHHHH
Q 013359 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAA--EQVDKAHARAD 119 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~--~~i~~ae~~i~ 119 (444)
.+..++..|+.++..|..++.....+-..++.-+.+.+..|.+.+..+..++....+..+-+..+.. .-+..|-.+..
T Consensus 84 ~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~ 163 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNR 163 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHH
Confidence 4566666777777777766666554444544444555666666666666655554433222211111 23445556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013359 120 ELEKQIDNLKKESEKQQKEKEAL 142 (444)
Q Consensus 120 eLe~qIe~LkkelE~~~~e~~~L 142 (444)
+|..|+.+|+...-.+.+++.++
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~el 186 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMEL 186 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHh
Confidence 77777777777666666665433
No 95
>PRK11281 hypothetical protein; Provisional
Probab=96.61 E-value=0.36 Score=57.03 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 158 AKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (444)
Q Consensus 158 ~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~k 190 (444)
...+-.+.+.+....+++.++..++.+++.++.
T Consensus 220 ~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 220 QLQDLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555555554
No 96
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=96.56 E-value=0.78 Score=44.03 Aligned_cols=117 Identities=21% Similarity=0.282 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 013359 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDN 127 (444)
Q Consensus 48 ~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~ 127 (444)
..+++-|..++..+......+......-..++..+.+.+..+..++.+....-..+... -.-.+-.+...++.++..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~ed---LAr~al~~k~~~e~~~~~ 102 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGRED---LAREALQRKADLEEQAER 102 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777888888888888888888776554444322 222344444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIN 167 (444)
Q Consensus 128 LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~ 167 (444)
++..++........+...+..++.++.++..+...+....
T Consensus 103 l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555444444433
No 97
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.53 E-value=0.38 Score=48.92 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=23.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 013359 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK 78 (444)
Q Consensus 41 ~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~ 78 (444)
......++.|+.++..|+.+-..+.++...+..+..+.
T Consensus 156 ~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~ 193 (306)
T PF04849_consen 156 SQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTY 193 (306)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc
Confidence 33456777788888877776666666655555444433
No 98
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.52 E-value=0.68 Score=47.10 Aligned_cols=85 Identities=16% Similarity=0.268 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIND-------EQKSKIRKTERALKVAE 185 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~e-------eqekqI~elE~~Lq~~E 185 (444)
.|+.+|..|..++.+-..+...+.+++..|-++..+++.++..+....+++...+. .+..++.+++++.....
T Consensus 210 ~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~ 289 (306)
T PF04849_consen 210 EANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECM 289 (306)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444333333333333322 33333444444444444
Q ss_pred HHHHHHHHHHhh
Q 013359 186 EEMMRAKFEATS 197 (444)
Q Consensus 186 eel~kak~E~~~ 197 (444)
..+..++.|+..
T Consensus 290 ~mL~EaQEElk~ 301 (306)
T PF04849_consen 290 AMLHEAQEELKT 301 (306)
T ss_pred HHHHHHHHHHHH
Confidence 444445555443
No 99
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.51 E-value=0.49 Score=42.15 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (444)
Q Consensus 115 e~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~ 184 (444)
-+.+..++.+...++.++..+..........+...+. .-......++..+.+.+.+++++..+-..+
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~---sw~~qk~~le~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEA---SWEEQKEQLEKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555554444433333322222 122233334444444444444444443333
No 100
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.50 E-value=0.21 Score=57.53 Aligned_cols=38 Identities=8% Similarity=0.280 Sum_probs=14.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 59 SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (444)
Q Consensus 59 sqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI 96 (444)
.++.-.+++|+...-+|..+...|+..+..+.+|+.++
T Consensus 711 ~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~ 748 (1141)
T KOG0018|consen 711 LELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERM 748 (1141)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 101
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.47 E-value=0.2 Score=53.37 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=16.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHH
Q 013359 39 DSSPLKIELDQLKSKIRSLESHIDEK 64 (444)
Q Consensus 39 ~~~~l~~eL~~l~~ki~~Lesqi~el 64 (444)
+-..+..++..++.++..|+..++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 98 QKQLLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446667777777777776665543
No 102
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.47 E-value=0.48 Score=54.33 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 013359 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKA 81 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~ 81 (444)
-...+++....++.++..++.+++..+..+..+..+++..
T Consensus 255 ~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~ 294 (1200)
T KOG0964|consen 255 QYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKAR 294 (1200)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666777777777777776666666555554
No 103
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=96.46 E-value=0.76 Score=42.77 Aligned_cols=119 Identities=23% Similarity=0.301 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDE--------VVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAH 115 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~--------eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae 115 (444)
..+++.++.+...+..++..++.++..+++ +-.++..........|.+-..+|..+..+...+ -..+.-..
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~-v~~L~h~k 83 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKT-VQILTHVK 83 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 456777777777777777777777766654 233444445555555555555555554433322 12233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (444)
Q Consensus 116 ~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeL 163 (444)
+++..+..+...++.++......+..+..++..+......+......+
T Consensus 84 eKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 84 EKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555544444444444444444444444433333
No 104
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=96.45 E-value=0.23 Score=53.18 Aligned_cols=164 Identities=18% Similarity=0.175 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHH---HHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 013359 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVV---AQKEKA-IQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADEL 121 (444)
Q Consensus 46 eL~~l~~ki~~Lesqi~ele~eI~~k~~eI---k~~e~~-I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eL 121 (444)
.++.|+.++..+++++..+.++..-+..|- ...++. .....+++.++..++.++++.+.+ ++++.....++++.|
T Consensus 160 ~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~-kt~el~~q~Ee~skL 238 (596)
T KOG4360|consen 160 LLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQS-KTKELSRQQEENSKL 238 (596)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 345566666666666655555443322221 111111 113334444444444444444333 244445556666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhH
Q 013359 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT-SRSK 200 (444)
Q Consensus 122 e~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~-~~a~ 200 (444)
.++|.++++.+..+.-+++++..- +......-+.++.+..+.+.+..+....+..++++++.+..-.+ ....
T Consensus 239 lsql~d~qkk~k~~~~Ekeel~~~-------Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s 311 (596)
T KOG4360|consen 239 LSQLVDLQKKIKYLRHEKEELDEH-------LQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLIS 311 (596)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhH
Confidence 777776666655555444444433 33334444455555555555556666666666666666554333 2222
Q ss_pred Hhhhhhc-cCCChhHHHH
Q 013359 201 ELTEVHS-AWLPPWLAVH 217 (444)
Q Consensus 201 ei~~~~g-~wl~Pw~~~~ 217 (444)
.-...|| .|.+-=++.+
T Consensus 312 ~~~~~~~~~fp~~~~aae 329 (596)
T KOG4360|consen 312 QEALSHGHHFPQLSLAAE 329 (596)
T ss_pred HHHHHhhhhCChhhHHHH
Confidence 3355667 4655555555
No 105
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=96.45 E-value=0.61 Score=45.88 Aligned_cols=11 Identities=9% Similarity=0.338 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 013359 171 KSKIRKTERAL 181 (444)
Q Consensus 171 ekqI~elE~~L 181 (444)
..+++.+...+
T Consensus 130 ~~Rl~~L~~~l 140 (251)
T PF11932_consen 130 QERLARLRAML 140 (251)
T ss_pred HHHHHHHHHhh
Confidence 33344443333
No 106
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.42 E-value=0.33 Score=52.93 Aligned_cols=73 Identities=25% Similarity=0.324 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~E 185 (444)
.+......++.+|..|+.+++.+.....+.+........++.+....+.+++.++.-.+..+..++.++..+.
T Consensus 103 e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk 175 (546)
T KOG0977|consen 103 ETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLK 175 (546)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444443333333333333333333333333333333333333333333333333
No 107
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.41 E-value=0.51 Score=53.44 Aligned_cols=19 Identities=5% Similarity=0.057 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013359 171 KSKIRKTERALKVAEEEMM 189 (444)
Q Consensus 171 ekqI~elE~~Lq~~Eeel~ 189 (444)
+.++.+++++.+..+....
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~ 393 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYE 393 (754)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333
No 108
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.40 E-value=1.2 Score=44.20 Aligned_cols=152 Identities=21% Similarity=0.193 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK 123 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~ 123 (444)
.....+++.++...+..-.+++.+++ .++.+++.....++...+-|.-++..+-.+ .+.+..+.-.++..|+.
T Consensus 26 kq~f~~~reEl~EFQegSrE~Eaele---sqL~q~etrnrdl~t~nqrl~~E~e~~Kek----~e~q~~q~y~q~s~Led 98 (333)
T KOG1853|consen 26 KQHFLQMREELNEFQEGSREIEAELE---SQLDQLETRNRDLETRNQRLTTEQERNKEK----QEDQRVQFYQQESQLED 98 (333)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 44445566677777666666665533 344444544444444444444444333211 12333344455555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhH
Q 013359 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE---EEMMRAKFEATSRSK 200 (444)
Q Consensus 124 qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~E---eel~kak~E~~~~a~ 200 (444)
....+....+.+.+.+.+||....++|.-.....--+++++..++..-.++.-++..|..-+ +.+.+++.|+..+..
T Consensus 99 dlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrq 178 (333)
T KOG1853|consen 99 DLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQ 178 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 65555666666666666666655555543333333344444444444444444444444333 455667777666555
Q ss_pred Hh
Q 013359 201 EL 202 (444)
Q Consensus 201 ei 202 (444)
++
T Consensus 179 el 180 (333)
T KOG1853|consen 179 EL 180 (333)
T ss_pred HH
Confidence 44
No 109
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.39 E-value=0.27 Score=55.82 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEA 195 (444)
Q Consensus 116 ~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~ 195 (444)
.++..+++--...+.++.........++.++.+++.++.++..++..|+.+++.-...-.++..+-..++.++.+...+.
T Consensus 638 ~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~ 717 (769)
T PF05911_consen 638 SELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEE 717 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhccc
Confidence 33344444444455556666666667777777777778888888888888877777777777777777777777766543
No 110
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.36 E-value=0.84 Score=53.51 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=28.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 013359 66 QELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLN 106 (444)
Q Consensus 66 ~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~ 106 (444)
++++..++.+.+.+..++.++.++.+++.+++.+|+++...
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666777777777777777777777777666554
No 111
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.35 E-value=0.85 Score=55.76 Aligned_cols=128 Identities=22% Similarity=0.283 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 73 EVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNA------AEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARA 146 (444)
Q Consensus 73 ~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~------~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~ 146 (444)
+.+..+.+.|.....++.+|...-..++.-+.... ..++..++..+..++.+++.|+++..-+..-...|-.+.
T Consensus 689 ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~ 768 (1822)
T KOG4674|consen 689 EKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQEL 768 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555544444444444333321 256677888888888888888888887777777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 013359 147 IEAEKKISDLSAKLEKLQKINDEQKS----KIRKTERALKVAEEEMMRAKFEATSRSK 200 (444)
Q Consensus 147 ~elEkkleEle~kveeLe~~~eeqek----qI~elE~~Lq~~Eeel~kak~E~~~~a~ 200 (444)
..+..+...+...+..++.....++. .-..++.+|..++.++.+++.+......
T Consensus 769 ~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~ 826 (1822)
T KOG4674|consen 769 EKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSS 826 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777777777776666554332 2334445555555555555555444433
No 112
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.33 E-value=2.7 Score=47.64 Aligned_cols=94 Identities=18% Similarity=0.268 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 80 KAIQDKSERIVSLQKELSSLQKKETLN---AAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156 (444)
Q Consensus 80 ~~I~e~e~~I~eLq~kI~sLqkK~s~~---~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEl 156 (444)
+++.+++..+.+++.+++.++.-.... .++.-...+....++..|+..++..+-......+.+..+++++|++...+
T Consensus 284 ~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~a 363 (1265)
T KOG0976|consen 284 DELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMA 363 (1265)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 334445555555666665554322211 11222244445555666666666666666666666666666666666665
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013359 157 SAKLEKLQKINDEQKSK 173 (444)
Q Consensus 157 e~kveeLe~~~eeqekq 173 (444)
...+..+++.+..-+..
T Consensus 364 l~dvr~i~e~k~nve~e 380 (1265)
T KOG0976|consen 364 LMDVRSIQEKKENVEEE 380 (1265)
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 55555555544433333
No 113
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.29 E-value=0.11 Score=53.01 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=12.5
Q ss_pred HHHHhcCCCchhccchHHHHHHHH
Q 013359 378 EMLKKHELTSPLATKELEWFAASA 401 (444)
Q Consensus 378 ~~~~~~e~~~~~a~~~~~w~~a~a 401 (444)
|.....++.=++.+.+ -|=.|.-
T Consensus 273 ~~I~~~si~~~~~~~~-~WT~AlK 295 (314)
T PF04111_consen 273 DKIGGVSIKLQFNSEE-EWTKALK 295 (314)
T ss_dssp TEECTCES-STTS-HH-HHHHHHH
T ss_pred CccCCeeeeecCCChh-HHHHHHH
Confidence 3344444444566666 8988873
No 114
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.29 E-value=1.1 Score=42.91 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 013359 178 ERALKVAEEEMMRAK 192 (444)
Q Consensus 178 E~~Lq~~Eeel~kak 192 (444)
+++++.+.+.+....
T Consensus 149 EkKl~~l~~~lE~ke 163 (201)
T PF13851_consen 149 EKKLQALSEQLEKKE 163 (201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 115
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.26 E-value=0.95 Score=51.64 Aligned_cols=67 Identities=13% Similarity=0.234 Sum_probs=33.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HH-------HHHHHHHHHHHHHHHHHHHHH
Q 013359 63 EKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLN--AA-------EQVDKAHARADELEKQIDNLK 129 (444)
Q Consensus 63 ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~--~~-------~~i~~ae~~i~eLe~qIe~Lk 129 (444)
.+..+++.+..|+.++...-+.++.++..+++.|.+++..+... ++ ..-..+++++..|++.|..|+
T Consensus 400 K~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlE 475 (1243)
T KOG0971|consen 400 KLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLE 475 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555554333221 11 222234455555555555543
No 116
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=96.20 E-value=0.39 Score=41.50 Aligned_cols=40 Identities=33% Similarity=0.493 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156 (444)
Q Consensus 117 ~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEl 156 (444)
++.+|+.+|+++...++..+.-+..++.++...++..+.+
T Consensus 59 r~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~l 98 (107)
T PF09304_consen 59 RIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAIL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 4444444444444444444333334444444444333333
No 117
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.17 E-value=1 Score=48.03 Aligned_cols=41 Identities=15% Similarity=0.351 Sum_probs=31.2
Q ss_pred chHhHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 339 HVDNVRVALKPYTKKVVRAYGKFLKSATTYHHQVQASVQEM 379 (444)
Q Consensus 339 ~~~~~~~~~~Py~~~~~~~~~~~~~~a~~~h~q~q~~~~~~ 379 (444)
-+|++...+--|-.++....--++.-+..||--+|+++.|.
T Consensus 566 ~ld~~~~~~n~~r~~i~k~V~~v~~~~~~fk~~IQssledl 606 (622)
T COG5185 566 KLDELKVDLNRKRYKIHKQVIHVIDITSKFKINIQSSLEDL 606 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhHHHH
Confidence 35566666666767777777778888899999999988775
No 118
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.14 E-value=0.73 Score=49.41 Aligned_cols=22 Identities=32% Similarity=0.170 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 013359 393 ELEWFAASALLVLPVIILFRIG 414 (444)
Q Consensus 393 ~~~w~~a~a~~~~p~~~~~~~~ 414 (444)
.+++|++|+-+++-++.+.|+.
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~ 496 (498)
T TIGR03007 475 RLAAFLASAGLLIAVYGALMAM 496 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888776653
No 119
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.13 E-value=0.34 Score=52.80 Aligned_cols=73 Identities=21% Similarity=0.283 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~E 185 (444)
.+..++.+|.....+..+....-..++..+...+.+++.++.-+...+..++.++..+..++..+...|+.+.
T Consensus 117 kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 117 KLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3333333333333333333333344444555555566666666666666666666666665555555555554
No 120
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.12 E-value=0.73 Score=54.46 Aligned_cols=63 Identities=8% Similarity=0.082 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHh
Q 013359 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (444)
Q Consensus 140 ~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ei 202 (444)
..++++..-++.+...++......+...+-.+.+.+-...+++..+.++..++...+.+..+.
T Consensus 176 ~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~ 238 (1109)
T PRK10929 176 TALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQRE 238 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555555555544433
No 121
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.11 E-value=0.17 Score=51.80 Aligned_cols=69 Identities=20% Similarity=0.235 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (444)
Q Consensus 123 ~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~ka 191 (444)
.++..|+++.+.+..++..++.+..+++.+..+.-.....++....+.....+.++.++......+.++
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333334444444444444444444444444444444443
No 122
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.11 E-value=1.2 Score=51.32 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhh
Q 013359 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVS------LQKELSSLQKK 102 (444)
Q Consensus 47 L~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~e------Lq~kI~sLqkK 102 (444)
+...-.+|-.|+..-..++...+...+.|..++..++.....+.. +.++|+.+..+
T Consensus 176 ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k 237 (1072)
T KOG0979|consen 176 LLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKK 237 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444455555555555555555555555555555555544 44556666443
No 123
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=1.5 Score=50.89 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (444)
Q Consensus 115 e~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~ka 191 (444)
..++..+|.+...-+..++.......+++++...++..+.+.......|...+.+......++...+..++.....+
T Consensus 380 ~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~ 456 (1141)
T KOG0018|consen 380 LEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSA 456 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhh
Confidence 33444555555555555555555555555655555555555555444444444444444444444444444333333
No 124
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.08 E-value=0.47 Score=53.68 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 137 KEKEALEARAIEAEKKISDLSAKLEKL 163 (444)
Q Consensus 137 ~e~~~LEae~~elEkkleEle~kveeL 163 (444)
.+...+.++.+.++.++++++.++..+
T Consensus 345 ~~~~~a~~~~~~L~~~l~~~~~~~~~~ 371 (754)
T TIGR01005 345 MQADAAQARESQLVSDVNQLKAASAQA 371 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333344444444555555554444444
No 125
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.06 E-value=1.2 Score=54.02 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhc
Q 013359 361 FLKSATTYHHQVQASVQEMLKKHELTSPLA 390 (444)
Q Consensus 361 ~~~~a~~~h~q~q~~~~~~~~~~e~~~~~a 390 (444)
++..+-..=...|+.|...|..-.++-.|.
T Consensus 607 l~df~e~v~~~~ra~IEaAL~~~GLLDA~v 636 (1353)
T TIGR02680 607 LVDFADDVPADVRAGLEAALEAAGLLDAWV 636 (1353)
T ss_pred heecCCCCCHHHHHHHHHHHHHCCCcceee
Confidence 333333344456677777777777766663
No 126
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.05 E-value=0.97 Score=50.97 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=37.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI 96 (444)
.++.+|..|+.++..++.++..+..-|...++++++.+..|++.+..+..+.+++
T Consensus 103 ~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eL 157 (1265)
T KOG0976|consen 103 HHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDEL 157 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3566777777777777777777777777777777777777776666555555444
No 127
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.04 E-value=1 Score=52.60 Aligned_cols=149 Identities=19% Similarity=0.187 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------HHHHHHHHHHHHHHHHHHHHH
Q 013359 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLN------AAEQVDKAHARADELEKQIDN 127 (444)
Q Consensus 54 i~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~------~~~~i~~ae~~i~eLe~qIe~ 127 (444)
|.+..+.|....+.|...+++....|.......+.|.+|...++.|+.+.... .++..+.+..+...++...+.
T Consensus 1586 i~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~ 1665 (1758)
T KOG0994|consen 1586 IQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEI 1665 (1758)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555555555555556666666665555443322 112222333333333333333
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 013359 128 LKKESEKQQKEKE-------ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSK 200 (444)
Q Consensus 128 LkkelE~~~~e~~-------~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ 200 (444)
|++..+..+.-++ ....+++.|..+..+|-..-.+..+.+.+++......++.|.....+|..++.++++...
T Consensus 1666 lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~ 1745 (1758)
T KOG0994|consen 1666 LQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLD 1745 (1758)
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 3333333322222 222223333333333322222333333344444455555555555566666655555443
Q ss_pred Hh
Q 013359 201 EL 202 (444)
Q Consensus 201 ei 202 (444)
-|
T Consensus 1746 ~I 1747 (1758)
T KOG0994|consen 1746 HI 1747 (1758)
T ss_pred HH
Confidence 33
No 128
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=96.03 E-value=1.2 Score=44.03 Aligned_cols=78 Identities=18% Similarity=0.330 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (444)
Q Consensus 115 e~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak 192 (444)
+.++..+...++.++++++..+..+.++...+......+.......+.......+....+...+..+..++..+...+
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r 146 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRR 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333333333333333334444444444444444444444444444333
No 129
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.02 E-value=1.7 Score=49.75 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhcCCCc
Q 013359 369 HHQVQASVQEMLKKHELTS 387 (444)
Q Consensus 369 h~q~q~~~~~~~~~~e~~~ 387 (444)
|.+--+++-++|+++-|-.
T Consensus 708 hEk~lD~~ieLLkk~qlDE 726 (1243)
T KOG0971|consen 708 HEKSLDFLIELLKKDQLDE 726 (1243)
T ss_pred HHHHHHHHHHHHhhccccc
Confidence 4555555556666655433
No 130
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.02 E-value=0.95 Score=49.83 Aligned_cols=19 Identities=11% Similarity=0.356 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHI 61 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi 61 (444)
...++++++.++.+....+
T Consensus 250 i~~~i~~i~~~l~~~~~~L 268 (560)
T PF06160_consen 250 IEEEIEQIEEQLEEALALL 268 (560)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444
No 131
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.99 E-value=1.9 Score=42.74 Aligned_cols=173 Identities=18% Similarity=0.248 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~Lk 129 (444)
+...+..+..++....+.+......+...+..+..++.++..|..+......++..+ .........+...|...|..+.
T Consensus 22 l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l-~~~t~~t~~~a~~L~~~i~~l~ 100 (264)
T PF06008_consen 22 LLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQL-NNNTERTLQRAQDLEQFIQNLQ 100 (264)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444455555555444443333322 3445555666666666666666
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhh
Q 013359 130 KESEKQQKEKEALEA-----RAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTE 204 (444)
Q Consensus 130 kelE~~~~e~~~LEa-----e~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ei~~ 204 (444)
..+..+..+...+.. .-.++...+.+.+..+++++... ........+.++..++.-+.+.+........+...
T Consensus 101 ~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~ 178 (264)
T PF06008_consen 101 DNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENES 178 (264)
T ss_pred HHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHH
Confidence 666666666665555 34555556666666666665552 55555555555666665555555543322221110
Q ss_pred hhccCCChhHHHHHHhhhHhhh
Q 013359 205 VHSAWLPPWLAVHLLQCQSLIE 226 (444)
Q Consensus 205 ~~g~wl~Pw~~~~~~~~~~~~~ 226 (444)
- -.=+|-+|..|-.+++++-.
T Consensus 179 l-~~~i~~~L~~~~~kL~Dl~~ 199 (264)
T PF06008_consen 179 L-AEAIRDDLNDYNAKLQDLRD 199 (264)
T ss_pred H-HHHHHHHHHHHHHHHHHHHH
Confidence 0 00144566666666666433
No 132
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=95.92 E-value=0.015 Score=59.31 Aligned_cols=124 Identities=17% Similarity=0.276 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 013359 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID 126 (444)
Q Consensus 47 L~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe 126 (444)
|..++.++..||..+..+...+......|.++...|......|.+++.+|.++...+ ..++..+.
T Consensus 30 Ls~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV---------------~~lq~Sl~ 94 (326)
T PF04582_consen 30 LSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTV---------------TSLQSSLS 94 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444443222 22223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (444)
Q Consensus 127 ~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~E 185 (444)
.+...+..+...+...+..+..+...++.+.-.+..|+..+..+.-.|..++.+++.+|
T Consensus 95 ~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 95 SLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence 44444444444444444444444444555555555555555555555555555555544
No 133
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.90 E-value=2.1 Score=42.64 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 169 EQKSKIRKTERALKVAEEEMMRAKFEATSRS 199 (444)
Q Consensus 169 eqekqI~elE~~Lq~~Eeel~kak~E~~~~a 199 (444)
...+.+....+.++.++++|..++.+...++
T Consensus 190 ~m~kei~~~re~i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 190 VMQKEIVQFREEIDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555443
No 134
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.86 E-value=1.5 Score=40.72 Aligned_cols=142 Identities=14% Similarity=0.120 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 78 KEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (444)
Q Consensus 78 ~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle 157 (444)
+--....+...+..++.++.....=+....-....+++.+...+.+.|++-..++..+......--.-++-...++..+.
T Consensus 11 ~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~ 90 (177)
T PF13870_consen 11 LRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLS 90 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444333222222234444555555555555555555555555444444444445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhccCCChhHHHHHHhhhH
Q 013359 158 AKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQS 223 (444)
Q Consensus 158 ~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ei~~~~g~wl~Pw~~~~~~~~~~ 223 (444)
.....+...+...+..+..+...+.....+..++..... ++..-||-+--|=|...|.++..
T Consensus 91 ~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~----~l~~~~~~~~~P~ll~Dy~~~~~ 152 (177)
T PF13870_consen 91 EELERLKQELKDREEELAKLREELYRVKKERDKLRKQNK----KLRQQGGLLGVPALLRDYDKTKE 152 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCCCcHHHHHHHHHHH
Confidence 555555555555555555555555555554444444333 23455677777766655665544
No 135
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.85 E-value=1.5 Score=46.87 Aligned_cols=62 Identities=19% Similarity=0.311 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 111 VDKAHARADELEKQIDNLKKESEKQQ---KEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKS 172 (444)
Q Consensus 111 i~~ae~~i~eLe~qIe~LkkelE~~~---~e~~~LEae~~elEkkleEle~kveeLe~~~eeqek 172 (444)
+..-+++|..|.++++.|..+++.+. ++.+...++...+-.+++....+.++|.+.+-+.+-
T Consensus 339 ie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~l 403 (622)
T COG5185 339 IELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKL 403 (622)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHH
Confidence 33344444444444444444444442 222233444444444444444455555444444333
No 136
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.81 E-value=1.3 Score=43.70 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 47 LDQLKSKIRSLESHIDEKTQELKG 70 (444)
Q Consensus 47 L~~l~~ki~~Lesqi~ele~eI~~ 70 (444)
|..++..+.++....+.+..+|++
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333
No 137
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=95.80 E-value=1.2 Score=47.98 Aligned_cols=88 Identities=20% Similarity=0.247 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 013359 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIR-------KTERAL 181 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~-------elE~~L 181 (444)
+++.+++.++..+.++++.+-+++..+.++...|.+.+.++.+++..+.-+.+.+..-+......-+ +++++.
T Consensus 205 KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDky 284 (596)
T KOG4360|consen 205 KELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKY 284 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444555555555556666666666666666677777777777666666665555555544443333 333333
Q ss_pred HHHHHHHHHHHHHHh
Q 013359 182 KVAEEEMMRAKFEAT 196 (444)
Q Consensus 182 q~~Eeel~kak~E~~ 196 (444)
.....++..+++|++
T Consensus 285 AE~m~~~~EaeeELk 299 (596)
T KOG4360|consen 285 AECMQMLHEAEEELK 299 (596)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444444
No 138
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.80 E-value=2.7 Score=43.13 Aligned_cols=80 Identities=18% Similarity=0.246 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 013359 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK--------------LEKLQKINDEQKSKIRKTERAL 181 (444)
Q Consensus 116 ~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~k--------------veeLe~~~eeqekqI~elE~~L 181 (444)
.++..++.++..|+.++...-.+++++..+......++..++.+ ++.|-.++--++.++..++.+.
T Consensus 133 ~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~ 212 (319)
T PF09789_consen 133 EQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEK 212 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444333333332 3444444445555566666655
Q ss_pred HHHHHHHHHHHHHH
Q 013359 182 KVAEEEMMRAKFEA 195 (444)
Q Consensus 182 q~~Eeel~kak~E~ 195 (444)
.-+...+.+.+.=+
T Consensus 213 ~l~k~~i~KYK~~l 226 (319)
T PF09789_consen 213 ELLKQTINKYKSAL 226 (319)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555533
No 139
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.79 E-value=2 Score=47.34 Aligned_cols=121 Identities=23% Similarity=0.337 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 78 KEKAIQDKSERIVSLQKELSSLQKKETLNAA-----------------EQVDKAHARADELEKQIDNLKKESEKQQKEKE 140 (444)
Q Consensus 78 ~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~-----------------~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~ 140 (444)
....+...+..|..|+..|...+++...... .++..++.+|..|+.+++.|..++...+....
T Consensus 194 ~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~ 273 (629)
T KOG0963|consen 194 LQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK 273 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3445555555666665555555544433311 44556666677777777766666555543332
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 141 --------ALEARAIEAEKKISDLSAKLEKL----QKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (444)
Q Consensus 141 --------~LEae~~elEkkleEle~kveeL----e~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~ 198 (444)
.+...+...+..+..+...++.+ ....+....+|..++..+.....++..++..++..
T Consensus 274 ~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 274 LAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred hccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333444555555555544433 34445566677777777777766666666665543
No 140
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.79 E-value=0.64 Score=41.14 Aligned_cols=13 Identities=38% Similarity=0.782 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 013359 47 LDQLKSKIRSLES 59 (444)
Q Consensus 47 L~~l~~ki~~Les 59 (444)
++.+.+.|.+++.
T Consensus 18 ve~L~s~lr~~E~ 30 (120)
T PF12325_consen 18 VERLQSQLRRLEG 30 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 141
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.76 E-value=2.7 Score=42.84 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLKKESEKQQ-KEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERA-LKVAEEEMMR 190 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~LkkelE~~~-~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~-Lq~~Eeel~k 190 (444)
.+..++..+..+...|...++.-+ .....|..++..++++.......++.|...+.+++..+..-+.. +..+...+.+
T Consensus 110 ~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~ 189 (310)
T PF09755_consen 110 DLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDK 189 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555432 22345555555555555555555555555555555554433332 2334455666
Q ss_pred HHHHHhhhhHHhhhhhccCCCh
Q 013359 191 AKFEATSRSKELTEVHSAWLPP 212 (444)
Q Consensus 191 ak~E~~~~a~ei~~~~g~wl~P 212 (444)
+..+...++.++..++.....|
T Consensus 190 l~~eKr~Lq~~l~~~~s~~~s~ 211 (310)
T PF09755_consen 190 LEAEKRRLQEKLEQPVSAPPSP 211 (310)
T ss_pred HHHHHHHHHHHHccccCCCCCc
Confidence 6666666666676655444444
No 142
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=95.74 E-value=1.7 Score=40.33 Aligned_cols=127 Identities=15% Similarity=0.274 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~Lk 129 (444)
.+.++..+..++.++..++...-.+...++..-......+.+.+.... ...+..+-.|-++..++.-++.-++
T Consensus 25 ~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~-------~ysE~dik~AYe~A~~lQ~~L~~~r 97 (159)
T PF05384_consen 25 ARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFD-------RYSEEDIKEAYEEAHELQVRLAMLR 97 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------ccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333333344333333333333333332 2223444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 130 KESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKV 183 (444)
Q Consensus 130 kelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~ 183 (444)
.+-..+....+.|+-++..++.-++..+..+..+.-.++=+...+..+...++.
T Consensus 98 e~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~ 151 (159)
T PF05384_consen 98 EREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIED 151 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 554444444444444444444444444444444444444444444444444333
No 143
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.69 E-value=1.1 Score=49.97 Aligned_cols=40 Identities=28% Similarity=0.345 Sum_probs=16.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 013359 60 HIDEKTQELKGKDEVVAQKEKAIQDK--SERIVSLQKELSSL 99 (444)
Q Consensus 60 qi~ele~eI~~k~~eIk~~e~~I~e~--e~~I~eLq~kI~sL 99 (444)
.+.++..++...+.+|.+++..|... +..|..+..++..+
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l 433 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEA 433 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 33444444444444444444444331 23444444444433
No 144
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.67 E-value=0.24 Score=47.74 Aligned_cols=45 Identities=13% Similarity=0.277 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 148 EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (444)
Q Consensus 148 elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak 192 (444)
++..++++.+..+.+|+.+++++..++..+..++..++.++...+
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444444443333
No 145
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.63 E-value=1.2 Score=48.87 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 013359 50 LKSKIRSLESHIDEKTQELK 69 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~ 69 (444)
++.++..++++|+.+...|.
T Consensus 194 ~~~q~~~le~ki~~lq~a~~ 213 (629)
T KOG0963|consen 194 LQEQLEELEKKISSLQSAIE 213 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333
No 146
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.61 E-value=3.7 Score=43.29 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 013359 114 AHARADELEKQIDNL 128 (444)
Q Consensus 114 ae~~i~eLe~qIe~L 128 (444)
+..++.+++.++..+
T Consensus 259 l~~~l~~le~~l~~l 273 (444)
T TIGR03017 259 LKTDIARAESKLAEL 273 (444)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 147
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.55 E-value=0.0035 Score=71.96 Aligned_cols=160 Identities=21% Similarity=0.338 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhhh------HH
Q 013359 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE-------RIVSLQKELSSLQKKETLN------AA 108 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~-------~I~eLq~kI~sLqkK~s~~------~~ 108 (444)
.+..+++..+..+..|+.....+..++.+...++.........+++ .++++..+...++...... ..
T Consensus 332 el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~ 411 (859)
T PF01576_consen 332 ELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELE 411 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3455555556666665555555555555555554444444333333 3333333333332222211 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel 188 (444)
.++..+...+.++..+++.++++...+..++..+.....+..+.+.++......|+..+++++..+.+++..++..+...
T Consensus 412 te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~ 491 (859)
T PF01576_consen 412 TELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKK 491 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555556666666666777777777777788888888888888888777
Q ss_pred HHHHHHHhhhhHH
Q 013359 189 MRAKFEATSRSKE 201 (444)
Q Consensus 189 ~kak~E~~~~a~e 201 (444)
.+++.++.....+
T Consensus 492 lRl~~el~~~r~e 504 (859)
T PF01576_consen 492 LRLQVELQQLRQE 504 (859)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 7777777655443
No 148
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.54 E-value=2.3 Score=40.58 Aligned_cols=142 Identities=20% Similarity=0.274 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 013359 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQI 125 (444)
Q Consensus 46 eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qI 125 (444)
++..++.+|..++.+...-+..+....+.+.+.+..-.+.+..+..+.+....+..++.. .+.+...++--..++...-
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~-~e~qLkEAk~iaE~adrK~ 83 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEA-QEAQLKEAKHIAEKADRKY 83 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555544444443333322222 1222333332223333223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 126 DNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (444)
Q Consensus 126 e~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel 188 (444)
+..-..|--++-+++..+.++.-.+.++.++...+..+...+..+...-+.+.++...++.+|
T Consensus 84 eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~i 146 (205)
T KOG1003|consen 84 EEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEEL 146 (205)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 333333333334444444444444444444444444444444444444444444444444333
No 149
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=95.54 E-value=1.3 Score=43.86 Aligned_cols=121 Identities=19% Similarity=0.327 Sum_probs=55.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 61 IDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKE 140 (444)
Q Consensus 61 i~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~ 140 (444)
..++...+....++.......+.+.+..+..|..+...++ .....++.+..+++..+.+|.....
T Consensus 7 k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~ae--------eea~~Le~k~~eaee~~~rL~~~~~------- 71 (246)
T PF00769_consen 7 KQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAE--------EEAEELEQKRQEAEEEKQRLEEEAE------- 71 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3344444444444444444444444444444444433332 2222333334444444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 141 ~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
....+...++.++.++...+..|.............+..++..++..+.+++.++.
T Consensus 72 ~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~ 127 (246)
T PF00769_consen 72 MQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELL 127 (246)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666666666666666666677777777766666666665554
No 150
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.53 E-value=2.9 Score=47.36 Aligned_cols=146 Identities=16% Similarity=0.215 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe 122 (444)
+..+|.+++.++.+++..++....+.+.+.....++....+..+.+...|..+|..+ +. .....-....+|+
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~-------K~-rE~rll~dyselE 103 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEY-------KF-REARLLQDYSELE 103 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-HHHHHhhhhHHHH
Confidence 334444444444444444444444444433333333333333333333333333322 11 1112223455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 123 KQIDNLKKESEKQQKEKEALE---ARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 123 ~qIe~LkkelE~~~~e~~~LE---ae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
.+--.|++++-.++...-+.| -+...++....-++..++++..-.+-.+.++++.-..++.-.++-..++.|+.
T Consensus 104 eENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~ 180 (717)
T PF09730_consen 104 EENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELD 180 (717)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544443333 33334444444555555555555555555555555555444444445555444
No 151
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.51 E-value=1.1 Score=52.47 Aligned_cols=71 Identities=23% Similarity=0.310 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 70 GKDEVVAQKEKAIQDKSERIVSLQ-KELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEA 141 (444)
Q Consensus 70 ~k~~eIk~~e~~I~e~e~~I~eLq-~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~ 141 (444)
++++..++++..|.++.....+|+ .++..+|...+.+ +++....+++...+..++..++.+++..+.....
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~-~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~ 533 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEV-EEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDN 533 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777 4666666555543 4556666666666666666666666666544443
No 152
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=95.50 E-value=1.5 Score=44.79 Aligned_cols=27 Identities=7% Similarity=0.235 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELK 69 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~ 69 (444)
...+++++++.+...+.+++.....++
T Consensus 84 ~~~~l~~a~a~l~~a~a~l~~~~~~~~ 110 (346)
T PRK10476 84 YELTVAQAQADLALADAQIMTTQRSVD 110 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555444433
No 153
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.49 E-value=0.0037 Score=71.71 Aligned_cols=100 Identities=20% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 61 IDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKE 140 (444)
Q Consensus 61 i~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~ 140 (444)
+.+++.+|+........++..-......+.+|...++++++.... .+...-.++.++.+++..++.....+..+...+.
T Consensus 133 ~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~-~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~ 211 (859)
T PF01576_consen 133 VAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQE-AEKKRKQLEAQLNELQAKLEESERQRNELTEQKA 211 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555555555555555555432222 1333333444444444444444444444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013359 141 ALEARAIEAEKKISDLSAKLE 161 (444)
Q Consensus 141 ~LEae~~elEkkleEle~kve 161 (444)
.++++..++...+.+....+.
T Consensus 212 kL~~E~~eL~~qLee~e~~~~ 232 (859)
T PF01576_consen 212 KLQSENSELTRQLEEAESQLS 232 (859)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444443333333333333333
No 154
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.48 E-value=3.4 Score=48.01 Aligned_cols=83 Identities=30% Similarity=0.429 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (444)
Q Consensus 114 ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~ 193 (444)
.+.+...++..++.++..+.........+......+..+..+....+.++...+.+......+++..+...+..+..++.
T Consensus 359 ~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~ 438 (908)
T COG0419 359 LEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEE 438 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445544444333333344444444444444444444455444544444445555555444444444444
Q ss_pred HHh
Q 013359 194 EAT 196 (444)
Q Consensus 194 E~~ 196 (444)
...
T Consensus 439 ~~~ 441 (908)
T COG0419 439 QIN 441 (908)
T ss_pred HHH
Confidence 333
No 155
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=3.8 Score=46.07 Aligned_cols=94 Identities=26% Similarity=0.273 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (444)
Q Consensus 111 i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~k 190 (444)
.......|+.++.+...+.........++..+...+....+...++....+.|+...+...+++.+++..+.....++..
T Consensus 519 ~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~ 598 (698)
T KOG0978|consen 519 VDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEI 598 (698)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555666666666677777777777777777777777777777777666
Q ss_pred HHHHHhhhhHHhhh
Q 013359 191 AKFEATSRSKELTE 204 (444)
Q Consensus 191 ak~E~~~~a~ei~~ 204 (444)
.......+..++..
T Consensus 599 ~~~k~~rleEE~e~ 612 (698)
T KOG0978|consen 599 EKFKRKRLEEELER 612 (698)
T ss_pred HHHHHHHHHHHHHH
Confidence 66665555555544
No 156
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=95.38 E-value=0.2 Score=40.54 Aligned_cols=66 Identities=44% Similarity=0.548 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 79 EKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEAR 145 (444)
Q Consensus 79 e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae 145 (444)
+..|.++...|+.|..+-..|.++... ....+..+...+.+++.++..+.+.++....++..++.+
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~-~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELK-LNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444322221 123333344444444555555554444444444444443
No 157
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.35 E-value=0.39 Score=46.30 Aligned_cols=26 Identities=12% Similarity=0.427 Sum_probs=12.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 42 PLKIELDQLKSKIRSLESHIDEKTQE 67 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Lesqi~ele~e 67 (444)
..+.++..+++++++++.+++++.++
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44455555555555555444444433
No 158
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=95.30 E-value=2.2 Score=42.10 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (444)
Q Consensus 114 ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~ 193 (444)
.+..+..|+.+...++.+-..+......++.....|+............|..++.+....+..+....+.-+.+-..++.
T Consensus 31 ~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~ 110 (246)
T PF00769_consen 31 SEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQE 110 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHh
Q 013359 194 EAT 196 (444)
Q Consensus 194 E~~ 196 (444)
++.
T Consensus 111 el~ 113 (246)
T PF00769_consen 111 ELE 113 (246)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 159
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=95.28 E-value=0.32 Score=53.24 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=6.6
Q ss_pred HHHHhhhhhhHH
Q 013359 260 ETIKAKWIPAVK 271 (444)
Q Consensus 260 ~~~~~k~~p~~~ 271 (444)
++|...=+|++.
T Consensus 584 e~f~~~~iPv~~ 595 (652)
T COG2433 584 EEFFKNEIPVLP 595 (652)
T ss_pred HHHhhcCCceee
Confidence 345555566654
No 160
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.26 E-value=3 Score=40.11 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKG 70 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~ 70 (444)
++.+|.+...++++-.+.|-.+..++.+
T Consensus 15 LKqQLke~q~E~~~K~~Eiv~Lr~ql~e 42 (202)
T PF06818_consen 15 LKQQLKESQAEVNQKDSEIVSLRAQLRE 42 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344444444443333333333333333
No 161
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.25 E-value=5.6 Score=43.48 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Q 013359 154 SDLSAKLEKLQKINDEQKSKIRKTERALKVAE---EEMMRAKFEAT 196 (444)
Q Consensus 154 eEle~kveeLe~~~eeqekqI~elE~~Lq~~E---eel~kak~E~~ 196 (444)
..+-+...+|+.++-.+++++..+...--.++ .++.+++++..
T Consensus 166 ~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~e 211 (772)
T KOG0999|consen 166 ARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETE 211 (772)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 33444556666666666666666655443333 55666655544
No 162
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.23 E-value=1.3 Score=44.35 Aligned_cols=75 Identities=23% Similarity=0.268 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (444)
Q Consensus 124 qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~ 198 (444)
+...|+.+.-.+-+.-+.++.....+.-.+.--+..+.-++..+...+.+|+.++..+..++.++.+.+......
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~ 135 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSG 135 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 334444444444444444444444555555555666677777777777788888888888888888877766633
No 163
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.21 E-value=1.3 Score=39.16 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013359 81 AIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 81 ~I~e~e~~I~eLq~kI~sL 99 (444)
.|..++.++..++.++..+
T Consensus 24 ~lr~~E~E~~~l~~el~~l 42 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARL 42 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 164
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.20 E-value=5.1 Score=44.82 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 58 ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 58 esqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sL 99 (444)
-.++-....-|+.+...+++.+.....+...|..|+++..-|
T Consensus 466 SK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~l 507 (961)
T KOG4673|consen 466 SKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKL 507 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHH
Confidence 333333344445555555555555555556666666666544
No 165
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.12 E-value=4 Score=47.46 Aligned_cols=11 Identities=55% Similarity=0.845 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 013359 47 LDQLKSKIRSL 57 (444)
Q Consensus 47 L~~l~~ki~~L 57 (444)
.++++.++..+
T Consensus 554 ~~~l~~e~~~l 564 (908)
T COG0419 554 LQQLKEELRQL 564 (908)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 166
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=95.10 E-value=1.3 Score=43.47 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 155 DLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRS 199 (444)
Q Consensus 155 Ele~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a 199 (444)
..+..+..|+..+.+.+.........+..+.+++..++.+..+..
T Consensus 57 qI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 57 QINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444444444443
No 167
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.10 E-value=2 Score=42.96 Aligned_cols=106 Identities=14% Similarity=0.236 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~q 124 (444)
..|.+|...++.|..+.....-+|++++..+..-....++-..++..|.-+..+|-.--.. .+....++.-.+.--+.+
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~-lek~rqKlshdlq~Ke~q 96 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCEN-LEKTRQKLSHDLQVKESQ 96 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHH-HHHHHHHhhHHHhhhHHH
Confidence 3444555555555554444444555544444444444444444444444433333211111 112222333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 125 IDNLKKESEKQQKEKEALEARAIEAEK 151 (444)
Q Consensus 125 Ie~LkkelE~~~~e~~~LEae~~elEk 151 (444)
+.-|+.++...+..++.|+.++..++.
T Consensus 97 v~~lEgQl~s~Kkqie~Leqelkr~Ks 123 (307)
T PF10481_consen 97 VNFLEGQLNSCKKQIEKLEQELKRCKS 123 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444444444443333
No 168
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.10 E-value=1.3 Score=46.97 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~E 185 (444)
.++.++.+++..+.++++++...++.-..+.+.+.....++++++. .+...+...+.+|.+|++++..+.
T Consensus 379 ~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e---~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 379 IVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEE---REKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHh
Confidence 3444555555555555555555554434443333333333333322 233334444455555555555554
No 169
>PF13166 AAA_13: AAA domain
Probab=95.08 E-value=4.2 Score=45.53 Aligned_cols=15 Identities=7% Similarity=0.177 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhc
Q 013359 369 HHQVQASVQEMLKKH 383 (444)
Q Consensus 369 h~q~q~~~~~~~~~~ 383 (444)
..-+.+.+|..|+.+
T Consensus 633 ~~~~~N~~RriLE~y 647 (712)
T PF13166_consen 633 AYNIPNVMRRILEAY 647 (712)
T ss_pred HHhhHHHhHHHHHHH
Confidence 455667777777776
No 170
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.07 E-value=5.9 Score=46.01 Aligned_cols=39 Identities=31% Similarity=0.337 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKI 153 (444)
Q Consensus 115 e~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkl 153 (444)
.+...++..+|..+.+.|+.-..++..+.+....++.++
T Consensus 480 ~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~ 518 (1195)
T KOG4643|consen 480 EAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQY 518 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555554444444444433
No 171
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=95.04 E-value=0.041 Score=56.16 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (444)
Q Consensus 41 ~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~ 103 (444)
.++.++|..|+.-+..|...+..+.+.|.+++..|..+...|.+....|..++.+|..++..+
T Consensus 31 s~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl 93 (326)
T PF04582_consen 31 SPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSL 93 (326)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555555555555555555554333
No 172
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=95.03 E-value=6.4 Score=42.60 Aligned_cols=61 Identities=10% Similarity=0.134 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 75 VAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEK 139 (444)
Q Consensus 75 Ik~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~ 139 (444)
+..++..+......+..+..++..++... +.....+++++..++.--++|..+.+.+..++
T Consensus 62 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l----e~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~i 122 (475)
T PRK10361 62 CELLNNEVRSLQSINTSLEADLREVTTRM----EAAQQHADDKIRQMINSEQRLSEQFENLANRI 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433222 12223344455555555555555555554443
No 173
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.02 E-value=1.8 Score=52.60 Aligned_cols=153 Identities=18% Similarity=0.235 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVA----QKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARA 118 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk----~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i 118 (444)
....+++++.++..++..+..++.=....+.... ..-.........+..+..++..++.+.... ...+..+++++
T Consensus 228 ~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 306 (1353)
T TIGR02680 228 ALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETA-REEERELDART 306 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4556667777777777777666544333222222 112222233344444444444444333332 34444555555
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 119 DELEKQIDNLKKESEKQQ--------KEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (444)
Q Consensus 119 ~eLe~qIe~LkkelE~~~--------~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~k 190 (444)
..++.+++.++.+++.++ .++..++.++.++.+........+...+....+...++++.+.+.......+..
T Consensus 307 ~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~ 386 (1353)
T TIGR02680 307 EALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRA 386 (1353)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555553 233333333333333333333333333444444444444444444444444433
Q ss_pred HHHHHh
Q 013359 191 AKFEAT 196 (444)
Q Consensus 191 ak~E~~ 196 (444)
...++.
T Consensus 387 ~~~el~ 392 (1353)
T TIGR02680 387 AREQLA 392 (1353)
T ss_pred HHHHHH
Confidence 333333
No 174
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=94.96 E-value=0.27 Score=45.48 Aligned_cols=57 Identities=26% Similarity=0.428 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQ---------KEKAIQDKSERIVSLQKELSSLQK 101 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~---------~e~~I~e~e~~I~eLq~kI~sLqk 101 (444)
.++..++.+|.+|+.++.++.++++.+..+++. +...|.+++.+|..++++|..+..
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555555555444 444555555555555555555544
No 175
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=94.96 E-value=1.2 Score=48.96 Aligned_cols=144 Identities=20% Similarity=0.219 Sum_probs=82.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 013359 38 VDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHAR 117 (444)
Q Consensus 38 ~~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~ 117 (444)
+....++..|..|...-..|.=|.+-+..+++..-+.|.++|.-|+++..++...+.-+ |.+.-+
T Consensus 104 ~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmL---Qqells------------ 168 (861)
T KOG1899|consen 104 PEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEML---QQELLS------------ 168 (861)
T ss_pred CcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHH---HHHHHh------------
Confidence 45566777777777777777778888888888888888888888888877776666544 333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK-INDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 118 i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~-~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
...|+.|.-+|=.++-.++-....+|.+..+.|++....+..+++++. +..+...+--+.+..+..+..++.-++++..
T Consensus 169 rtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~ 248 (861)
T KOG1899|consen 169 RTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRS 248 (861)
T ss_pred hhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHh
Confidence 134444444444444444444444555555555544444444444432 2334444444444444444444444444433
No 176
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=2.9 Score=47.44 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 174 IRKTERALKVAEEEMMRAKFEATSR 198 (444)
Q Consensus 174 I~elE~~Lq~~Eeel~kak~E~~~~ 198 (444)
+.+...+++..+.++.+.+.+..++
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~ 825 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTL 825 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555544444
No 177
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=94.89 E-value=3.9 Score=39.47 Aligned_cols=109 Identities=12% Similarity=0.139 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~Lk 129 (444)
++.-|.+++..+.+....+...-..-+.++..+.+....+.+.+.+....-.++....- ..+-.+....+.++..|+
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLA---r~Al~~k~~~~~~~~~l~ 105 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLA---RAALIEKQKAQELAEALE 105 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHHHHH
Confidence 45555555556666666666666666667777777777777777777655555543211 122223333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 130 KESEKQQKEKEALEARAIEAEKKISDLSAKLE 161 (444)
Q Consensus 130 kelE~~~~e~~~LEae~~elEkkleEle~kve 161 (444)
.+++.+......+...+.+++.++.+...+..
T Consensus 106 ~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 106 RELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433
No 178
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.85 E-value=5.1 Score=40.63 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 51 ~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
+..-.-|-.+++..++.++++..++...-+.+.+++--+..++.++...|
T Consensus 143 kd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq 192 (305)
T PF14915_consen 143 KDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQ 192 (305)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444555555544444444444444
No 179
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=94.84 E-value=4.3 Score=39.72 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKE 95 (444)
Q Consensus 48 ~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~k 95 (444)
..|++-|...++.+.++.+.+...-..-+.++..+++....+..++++
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444443
No 180
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=94.84 E-value=1.5 Score=44.19 Aligned_cols=21 Identities=29% Similarity=0.221 Sum_probs=14.1
Q ss_pred hhhccCCChhHHHHHHhhhHh
Q 013359 204 EVHSAWLPPWLAVHLLQCQSL 224 (444)
Q Consensus 204 ~~~g~wl~Pw~~~~~~~~~~~ 224 (444)
..++.|++.|+..-+.-+=++
T Consensus 257 ~~~~~~~~~~~i~llfi~iel 277 (301)
T PF14362_consen 257 EDPSALLASLFIFLLFIAIEL 277 (301)
T ss_pred CCCcHHHHHHHHHHHHHHHHH
Confidence 445778888888777655553
No 181
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=94.82 E-value=2.4 Score=36.71 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 124 QIDNLKKESEKQQKEKEALEARAIEAEKKIS 154 (444)
Q Consensus 124 qIe~LkkelE~~~~e~~~LEae~~elEkkle 154 (444)
+.+.|+..+..+..+......+..+++.++.
T Consensus 38 qkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 38 QKDQLRNALQSLQAQNASRNQRIAELQAKID 68 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 182
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.76 E-value=8.9 Score=42.95 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 148 EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 148 elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
.+.+++......++.|+.....+++++..-..++..++-.+++++.|..
T Consensus 598 ~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e 646 (786)
T PF05483_consen 598 NLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELE 646 (786)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444333344444444444444333
No 183
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.70 E-value=7.2 Score=41.64 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhccCCChhH
Q 013359 169 EQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWL 214 (444)
Q Consensus 169 eqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ei~~~~g~wl~Pw~ 214 (444)
.+...|.++-..+.+.+..|-+...+..++++++...+|+.=.-..
T Consensus 386 ~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfa 431 (521)
T KOG1937|consen 386 VYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFA 431 (521)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4555666666677777777777777777777777555544433333
No 184
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.65 E-value=4.4 Score=38.97 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQK 94 (444)
Q Consensus 46 eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~ 94 (444)
+|+-|+..+...+.+++...++|-.+...+++....+..++..+..+.+
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~ 59 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQD 59 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4555555555555555555555555554444444444444444444444
No 185
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=94.61 E-value=0.19 Score=46.46 Aligned_cols=63 Identities=25% Similarity=0.404 Sum_probs=32.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (444)
Q Consensus 68 I~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~ 136 (444)
+...+.+|.++..++.+....+..|.+++.+|.+..+. .++...|..++.++..++..++.+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~------~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN------EELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555556666666666666666666554443 2333444444444444444444443
No 186
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.61 E-value=4.8 Score=41.44 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=55.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 013359 67 ELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE-------KQIDNLKKESEKQQKEK 139 (444)
Q Consensus 67 eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe-------~qIe~LkkelE~~~~e~ 139 (444)
+|.++++.+.++-..+++...+-..|+..=+.|-+.+.-..+ -..+++.+...|+ ++-..++-.++++..+.
T Consensus 79 k~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~-vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 79 KITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVRE-VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345556666666666666666666666555444333332211 1223333333333 33333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Q 013359 140 EALEARAIEAEKKISDLSAKLEKLQK-----------INDEQKSKIRKTERALKVAEEEM 188 (444)
Q Consensus 140 ~~LEae~~elEkkleEle~kveeLe~-----------~~eeqekqI~elE~~Lq~~Eeel 188 (444)
.+.+.+..++..++.|.-...+.|.+ .++..+..|.+++.+.+++.-|+
T Consensus 158 ~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~Ei 217 (401)
T PF06785_consen 158 GEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEI 217 (401)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444443344443333333332 23355555666666666654443
No 187
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.60 E-value=4.1 Score=44.55 Aligned_cols=20 Identities=35% Similarity=0.415 Sum_probs=10.2
Q ss_pred CcchHHHHHHHHHHHHHccc
Q 013359 234 KPAMDVAIQKALEKKAQAGK 253 (444)
Q Consensus 234 ~p~~~~~~~k~~~~~~~~~~ 253 (444)
-|+-.+....+-++.-.-|.
T Consensus 253 dp~rreia~~~l~~li~dgr 272 (514)
T TIGR03319 253 DPVRREIARMALEKLIQDGR 272 (514)
T ss_pred chHHHHHHHHHHHHHHHcCC
Confidence 35555555555555544444
No 188
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.58 E-value=1.6 Score=42.81 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFE 194 (444)
Q Consensus 142 LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E 194 (444)
...++..+...++.++..+...+......+..+..+.+.+..+.++++++..+
T Consensus 51 h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 51 HVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444445555555555555555555555
No 189
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.57 E-value=2.4 Score=45.04 Aligned_cols=71 Identities=13% Similarity=0.229 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 108 AEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (444)
Q Consensus 108 ~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~L 181 (444)
+....+.+.++.+..++...++.....+.++......++.+++...++. +...+.++.+++.++..+---+
T Consensus 381 e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~---~~s~d~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 381 ERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEA---LGSKDEKITDLQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHheeh
Confidence 4555566666666666666666555555555555555544444443333 3333444444444444444333
No 190
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=94.54 E-value=5 Score=40.43 Aligned_cols=57 Identities=9% Similarity=0.205 Sum_probs=29.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (444)
Q Consensus 41 ~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~ 97 (444)
..+..++++.++.+..++.++..++..+.....++...+..++.....+...+.+++
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~ 132 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLR 132 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344555666666666666666555555555444444444444444444444444443
No 191
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.92 Score=49.80 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKI 153 (444)
Q Consensus 111 i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkl 153 (444)
+....+.+..|+.++..|+.+++.++..++.|++++..+..++
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555554433
No 192
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.48 E-value=4.9 Score=44.21 Aligned_cols=44 Identities=5% Similarity=0.018 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS 86 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e 86 (444)
+..+...+..++..+..++.++..+..+...++..++.++++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555554444443
No 193
>PF13514 AAA_27: AAA domain
Probab=94.43 E-value=4.6 Score=48.00 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 148 EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (444)
Q Consensus 148 elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~E 185 (444)
+++..+.++...++.++..+.++...+..++.++..++
T Consensus 893 ~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~ 930 (1111)
T PF13514_consen 893 ELEAELEELEEELEELEEELEELQEERAELEQELEALE 930 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444444443
No 194
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=94.43 E-value=2.7 Score=44.30 Aligned_cols=24 Identities=8% Similarity=0.375 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQE 67 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~e 67 (444)
..++++++.++...+.+..+....
T Consensus 214 ~~~l~~l~~~l~~~~~~~~~~~~~ 237 (444)
T TIGR03017 214 RARLNELSAQLVAAQAQVMDASSK 237 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666655554443
No 195
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=94.35 E-value=5 Score=38.26 Aligned_cols=113 Identities=16% Similarity=0.266 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 70 GKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEA 149 (444)
Q Consensus 70 ~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~el 149 (444)
++..-+.+++.++.+.+.-|.+-...|.+. +....-+..-......++..|+.-++.....+...+.-....
T Consensus 64 GKq~iveqLe~ev~EAe~vV~ee~~sL~~a--------q~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~A 135 (188)
T PF05335_consen 64 GKQQIVEQLEQEVREAEAVVQEEKASLQQA--------QANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGA 135 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444433333333 233444555666677777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 150 EKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (444)
Q Consensus 150 EkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~k 190 (444)
...+.+-...++..+..++.+..++.....+++.++..-.+
T Consensus 136 Q~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~k 176 (188)
T PF05335_consen 136 QQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYK 176 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777766666666666666544333
No 196
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.28 E-value=7.2 Score=41.67 Aligned_cols=156 Identities=21% Similarity=0.211 Sum_probs=71.1
Q ss_pred ccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---HHH
Q 013359 33 TASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLN---AAE 109 (444)
Q Consensus 33 ~~~~~~~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~---~~~ 109 (444)
.+..+.++++-..+++++.......+ ++..+-+...-++++++..-.+...++.+++ .+.-+-.....+ -+.
T Consensus 219 ~p~~~~passe~ee~eel~eq~eene----el~ae~kqh~v~~~ales~~sq~~e~~selE-~llklkerl~e~l~dgea 293 (521)
T KOG1937|consen 219 KPIFAKPASSEEEEVEELTEQNEENE----ELQAEYKQHLVEYKALESKRSQFEEQNSELE-KLLKLKERLIEALDDGEA 293 (521)
T ss_pred ccccCCCccccchhHHHHHhhhhhHH----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHhHHHHHHhcCChHh
Confidence 45566677777777777766666553 2333333334445555554444444444444 221111111111 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMM 189 (444)
Q Consensus 110 ~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~ 189 (444)
.+.+++..+..++.++..|.++.++...-+ ..+...+...++.++-+-.+ -..|++++..+...-+++.
T Consensus 294 yLaKL~~~l~~~~~~~~~ltqqwed~R~pl----------l~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~ 362 (521)
T KOG1937|consen 294 YLAKLMGKLAELNKQMEELTQQWEDTRQPL----------LQKKLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIE 362 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544443222 12222222222222211122 3556666666666666666
Q ss_pred HHHHHHhhhhHHhhh
Q 013359 190 RAKFEATSRSKELTE 204 (444)
Q Consensus 190 kak~E~~~~a~ei~~ 204 (444)
+.+.....+.+++..
T Consensus 363 ~~eel~~~Lrsele~ 377 (521)
T KOG1937|consen 363 SNEELAEKLRSELEK 377 (521)
T ss_pred hhHHHHHHHHHHHhc
Confidence 555555555444443
No 197
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.27 E-value=5.5 Score=38.50 Aligned_cols=129 Identities=18% Similarity=0.223 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~Lk 129 (444)
++.++...+.++.++...+..+.....+....|.+.+..|..+-.+ .+.+-...+.++.++.
T Consensus 14 ~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e------------------~~~~~~~~~~~i~~~~ 75 (207)
T PF05010_consen 14 VQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEE------------------KQKQKELSEAEIQKLL 75 (207)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH------------------HHhhHHhHHHHHHHHH
Confidence 3444444444444444444444444444444444444444443332 1112233345555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 130 KESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 130 kelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
.+.+....++..++.-..++-.+.......++.+...-+.+.+.+.++...+...+.....++..+.
T Consensus 76 ~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAe 142 (207)
T PF05010_consen 76 KERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAE 142 (207)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555444
No 198
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.18 E-value=7.7 Score=45.11 Aligned_cols=39 Identities=31% Similarity=0.495 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQ 83 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~ 83 (444)
.+|-+++.+-.+|+.....-+..|+.+.+++..++..++
T Consensus 181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE 219 (1072)
T KOG0979|consen 181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVE 219 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555554443
No 199
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.16 E-value=0.014 Score=65.82 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=0.0
Q ss_pred hhhcchhHHhh
Q 013359 300 KTAVTPHIIRV 310 (444)
Q Consensus 300 r~~~~p~~~~~ 310 (444)
+..+..|+..+
T Consensus 539 k~~le~~~~~l 549 (713)
T PF05622_consen 539 KQKLEEHLEKL 549 (713)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 34444555544
No 200
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.13 E-value=15 Score=43.08 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 013359 44 KIELDQLKSKIRSLES 59 (444)
Q Consensus 44 ~~eL~~l~~ki~~Les 59 (444)
-.+|+.|+..|.+.+.
T Consensus 410 ~~EIerLK~dl~AaRe 425 (1041)
T KOG0243|consen 410 YEEIERLKRDLAAARE 425 (1041)
T ss_pred HHHHHHHHHHHHHhHh
Confidence 3455556666655544
No 201
>PF13166 AAA_13: AAA domain
Probab=94.09 E-value=6.3 Score=44.14 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 152 KISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (444)
Q Consensus 152 kleEle~kveeLe~~~eeqekqI~elE~~Lq 182 (444)
.+..+...+..++..+...+..+.+++.++.
T Consensus 425 ~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 455 (712)
T PF13166_consen 425 EINSLEKKLKKAKEEIKKIEKEIKELEAQLK 455 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333444444444444444333
No 202
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.01 E-value=2.9 Score=37.77 Aligned_cols=10 Identities=30% Similarity=0.358 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 013359 183 VAEEEMMRAK 192 (444)
Q Consensus 183 ~~Eeel~kak 192 (444)
.-+.++.+++
T Consensus 137 kke~E~~kLk 146 (151)
T PF11559_consen 137 KKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 203
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=94.01 E-value=9.4 Score=40.19 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=17.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 41 SPLKIELDQLKSKIRSLESHIDEKTQ 66 (444)
Q Consensus 41 ~~l~~eL~~l~~ki~~Lesqi~ele~ 66 (444)
..+..++..+++.+..++.++..++.
T Consensus 92 ~~~~~~~~~~~~~l~~~~~q~~~l~~ 117 (421)
T TIGR03794 92 PELRERLQESYQKLTQLQEQLEEVRN 117 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777766654
No 204
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=94.00 E-value=5.5 Score=43.38 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013359 109 EQVDKAHARADELEKQIDNLK 129 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe~Lk 129 (444)
..+..++....-|..+|+.++
T Consensus 316 ~~l~k~ke~n~~L~~Eie~V~ 336 (570)
T COG4477 316 DYLEKAKENNEHLKEEIERVK 336 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666555554
No 205
>PRK10698 phage shock protein PspA; Provisional
Probab=93.92 E-value=6.7 Score=38.17 Aligned_cols=112 Identities=17% Similarity=0.164 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH----HHHHHHHHHHHHHHHHH
Q 013359 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAA----EQVDKAHARADELEKQI 125 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~----~~i~~ae~~i~eLe~qI 125 (444)
++.=|.+++..+.++.+.+...-..-+.++..+.+....+.+.+.+-...-.++....- .+-..+..++..|+.++
T Consensus 29 l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~ 108 (222)
T PRK10698 29 VRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEV 108 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666667777777777777777766554444433211 12223444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 126 DNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLE 161 (444)
Q Consensus 126 e~LkkelE~~~~e~~~LEae~~elEkkleEle~kve 161 (444)
+.....++.+..++..|+.++.+++.+...+..+..
T Consensus 109 ~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~ 144 (222)
T PRK10698 109 TLVDETLARMKKEIGELENKLSETRARQQALMLRHQ 144 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555444443
No 206
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=2 Score=37.94 Aligned_cols=8 Identities=25% Similarity=0.596 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 013359 173 KIRKTERA 180 (444)
Q Consensus 173 qI~elE~~ 180 (444)
++..++++
T Consensus 85 ri~tLekQ 92 (119)
T COG1382 85 RIKTLEKQ 92 (119)
T ss_pred HHHHHHHH
Confidence 33333333
No 207
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=93.75 E-value=2.2 Score=38.08 Aligned_cols=31 Identities=23% Similarity=0.474 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVV 75 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~~k~~eI 75 (444)
.++.++...+++++.+++.+.+++..+...+
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~ 36 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASI 36 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544444433333
No 208
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.75 E-value=7 Score=37.80 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISD 155 (444)
Q Consensus 116 ~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleE 155 (444)
.-..+|-..-++++..++.....-+.|.....+...++..
T Consensus 90 ~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~ 129 (207)
T PF05010_consen 90 KSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKK 129 (207)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444433333333333333333
No 209
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.74 E-value=4.1 Score=46.32 Aligned_cols=18 Identities=22% Similarity=0.529 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013359 111 VDKAHARADELEKQIDNL 128 (444)
Q Consensus 111 i~~ae~~i~eLe~qIe~L 128 (444)
+..+.++=..|.++++.+
T Consensus 602 ~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 602 YEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333343433444433333
No 210
>PRK00106 hypothetical protein; Provisional
Probab=93.71 E-value=8.2 Score=42.43 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=8.8
Q ss_pred cchHHHHHHHHHHHHHccc
Q 013359 235 PAMDVAIQKALEKKAQAGK 253 (444)
Q Consensus 235 p~~~~~~~k~~~~~~~~~~ 253 (444)
|+-.+....+-++.-.-|.
T Consensus 275 pvRReiAr~~le~Li~dgr 293 (535)
T PRK00106 275 PIRREIARMTLESLIKDGR 293 (535)
T ss_pred hHHHHHHHHHHHHHHHcCC
Confidence 4444444444444444444
No 211
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=93.71 E-value=7.4 Score=39.24 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKG 70 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~ 70 (444)
...+.+.++.+...+.++..+...++.
T Consensus 54 ~~~~~~a~a~l~~a~a~~~~~~~~~~~ 80 (327)
T TIGR02971 54 TAELDVARTQLDEAKARLAQVRAGAKK 80 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 455666667776666666665554443
No 212
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=93.65 E-value=2.2 Score=38.13 Aligned_cols=39 Identities=5% Similarity=0.222 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 013359 51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERI 89 (444)
Q Consensus 51 ~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I 89 (444)
+.++.++..+.+.+.++++.+...+..++..+.+...-+
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~ 43 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAK 43 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666665555555555555444444
No 213
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=93.57 E-value=8.3 Score=38.12 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
+..+..........+....+..-..-.++...|......|.++-.++..+.
T Consensus 64 L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~ 114 (264)
T PF06008_consen 64 LQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLN 114 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333333333333333333333334444455555555555555555555443
No 214
>PHA03332 membrane glycoprotein; Provisional
Probab=93.56 E-value=2.5 Score=49.06 Aligned_cols=18 Identities=22% Similarity=0.554 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013359 109 EQVDKAHARADELEKQID 126 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe 126 (444)
+++...+.||++|++++.
T Consensus 930 ~nI~avNgRIs~Led~VN 947 (1328)
T PHA03332 930 NNIRAVNGRVSDLEDQVN 947 (1328)
T ss_pred hhHHHhcccHHHHHHHHH
Confidence 344445555555555544
No 215
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=93.55 E-value=4.8 Score=42.52 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 115 HARADELEKQIDNLKKESEKQQKEKEALEAR 145 (444)
Q Consensus 115 e~~i~eLe~qIe~LkkelE~~~~e~~~LEae 145 (444)
.+.+.+.|.++.+|+++...++++.-..++.
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~ 77 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEERVREEAT 77 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666665555543333
No 216
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=93.48 E-value=5.5 Score=41.64 Aligned_cols=120 Identities=15% Similarity=0.251 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 74 VVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKI 153 (444)
Q Consensus 74 eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkl 153 (444)
-+.+...-....+....+....|+.++..++ ..+++...+=..+|+|++.+-.+......++.+...+..++...+
T Consensus 221 hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~----~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V 296 (359)
T PF10498_consen 221 HLEQMKQHKKSIESALPETKSQLDKLQQDIS----KTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGV 296 (359)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3333444444444444444555544443333 334555666677777888887777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhh
Q 013359 154 SDLSAKLEKLQKINDEQKSKIRKTERA------LKVAEEEMMRAKFEATS 197 (444)
Q Consensus 154 eEle~kveeLe~~~eeqekqI~elE~~------Lq~~Eeel~kak~E~~~ 197 (444)
.+....+..+..+++..+.++++-... +..++..+.+++.|...
T Consensus 297 ~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 297 SERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQ 346 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777665443 33455555666655553
No 217
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.45 E-value=4.3 Score=44.24 Aligned_cols=12 Identities=42% Similarity=0.457 Sum_probs=6.3
Q ss_pred chHhHHHhhccc
Q 013359 339 HVDNVRVALKPY 350 (444)
Q Consensus 339 ~~~~~~~~~~Py 350 (444)
|-|-.+++.+|-
T Consensus 578 ~~d~~~~~~~~~ 589 (654)
T KOG4809|consen 578 HADMWRETHKPS 589 (654)
T ss_pred CHHHHHHHhhhh
Confidence 444555555554
No 218
>PF13514 AAA_27: AAA domain
Probab=93.43 E-value=8.9 Score=45.67 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQ 83 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~ 83 (444)
.++.....++..++.++..++.++......+..+-..+.
T Consensus 736 ~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~ 774 (1111)
T PF13514_consen 736 EELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLG 774 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344445566666666666666666666666665554443
No 219
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=93.37 E-value=3.1 Score=37.22 Aligned_cols=45 Identities=2% Similarity=0.235 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 013359 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVS 91 (444)
Q Consensus 47 L~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~e 91 (444)
++..+++|++...+|..+++.+..-...+....+.+.+.+..+.+
T Consensus 10 y~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e 54 (136)
T PF11570_consen 10 YEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE 54 (136)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444454444
No 220
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=93.35 E-value=6.8 Score=40.40 Aligned_cols=125 Identities=16% Similarity=0.180 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 013359 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNA-AEQVDKAHARADELEKQIDNLKKESEKQQKE-------KEALE 143 (444)
Q Consensus 72 ~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~-~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e-------~~~LE 143 (444)
.+.+.-++.++.+....+.+.+.++...+++...+. +.+.......+..|+.++..++.++..+... ...+.
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~ 248 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQ 248 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHH
Confidence 345556666777777777777777777766554432 1222334444555666665555555544321 22445
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 144 ARAIEAEKKISDLSAKLEKL-QKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 144 ae~~elEkkleEle~kveeL-e~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
++...++.++.+...++..- .........+.++++.+.+..+..+..+-....
T Consensus 249 ~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~ 302 (362)
T TIGR01010 249 ARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQ 302 (362)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544443221 112233344555555555555544444433333
No 221
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=93.31 E-value=5.6 Score=37.88 Aligned_cols=74 Identities=24% Similarity=0.359 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (444)
Q Consensus 120 eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~ 193 (444)
.+-.....+++.++....+..+++....+++.++-+++.....+....++....|..++.....+++++..++.
T Consensus 107 ~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 107 KLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555566666666666666666666666666666666666666666666666655543
No 222
>PRK10869 recombination and repair protein; Provisional
Probab=93.31 E-value=7.1 Score=43.01 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHHhh
Q 013359 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKT---ERALKVAEEEMMRAKFEATSRSKELT 203 (444)
Q Consensus 141 ~LEae~~elEkkleEle~kveeLe~~~eeqekqI~el---E~~Lq~~Eeel~kak~E~~~~a~ei~ 203 (444)
++++++..+..-...+...++++-.-.++.+.+++.+ +..++.++.++.++..+....+.+++
T Consensus 300 ~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS 365 (553)
T PRK10869 300 ELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLH 365 (553)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333333333323344444444444444332 23455555555555555555554443
No 223
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=93.30 E-value=9.6 Score=38.01 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 148 EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 148 elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
++.+...++..-+++|...++..+..|--+.++++..+.+|.+++....
T Consensus 254 Elkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~ 302 (330)
T KOG2991|consen 254 ELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLE 302 (330)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555555555555555555555555555554444
No 224
>PRK12704 phosphodiesterase; Provisional
Probab=93.25 E-value=7.1 Score=42.75 Aligned_cols=18 Identities=6% Similarity=0.100 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 013359 369 HHQVQASVQEMLKKHELT 386 (444)
Q Consensus 369 h~q~q~~~~~~~~~~e~~ 386 (444)
|..+-..+..+--++.++
T Consensus 316 ~~~i~~ll~~l~~R~~~~ 333 (520)
T PRK12704 316 HPELIKLLGRLKYRTSYG 333 (520)
T ss_pred HHHHHHHHHHhhccCcCC
Confidence 344444444432233343
No 225
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.25 E-value=15 Score=41.88 Aligned_cols=59 Identities=8% Similarity=0.103 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRS 199 (444)
Q Consensus 141 ~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a 199 (444)
..+.+...+.-++++.-..+..++-++++-+++-.-|.-.+.+-..|+.|+.+=.+.++
T Consensus 491 ~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ 549 (861)
T PF15254_consen 491 QFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQ 549 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555566666666666666666666666666666666666666654444443
No 226
>PRK09343 prefoldin subunit beta; Provisional
Probab=93.15 E-value=2.9 Score=36.87 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELKG 70 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~~ 70 (444)
.++.+.-.++..++.++..+..++..
T Consensus 7 ~~~q~~~~~~q~lq~~l~~~~~q~~~ 32 (121)
T PRK09343 7 PEVQAQLAQLQQLQQQLERLLQQKSQ 32 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 227
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.10 E-value=0.026 Score=63.51 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 013359 156 LSAKLEKLQKINDE 169 (444)
Q Consensus 156 le~kveeLe~~~ee 169 (444)
+...+.+++....+
T Consensus 368 ~k~qi~eLe~~l~~ 381 (713)
T PF05622_consen 368 YKKQIQELEQKLSE 381 (713)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 228
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.01 E-value=17 Score=39.98 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (444)
Q Consensus 120 eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeL 163 (444)
..+.+..+|+.++...+..-..+-++..++|.+--.+++.+..|
T Consensus 146 ~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~L 189 (772)
T KOG0999|consen 146 AVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNL 189 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34445555566666555555555555555555444444444433
No 229
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=93.00 E-value=13 Score=39.74 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 52 SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLN-AAEQVDKAHARADELEKQIDNLKK 130 (444)
Q Consensus 52 ~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~-~~~~i~~ae~~i~eLe~qIe~Lkk 130 (444)
.=+..-|.-+++++..+.. +.+.-.+.++...+..+.+-+..+...+++...+ -+.+....-.-|+.|+.|+.+++.
T Consensus 223 aLL~~sE~~VN~Ls~rar~--D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~a 300 (434)
T PRK15178 223 RILSFAEQHVNTVSARMQK--ERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKA 300 (434)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777777776544 7788888888888888888888888888776554 234444445556666666666666
Q ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 131 ESEKQQK-------EKEALEARAIEAEKKISDLSAKLE------KLQKIN---DEQKSKIRKTERALKVAEEEMMRAKFE 194 (444)
Q Consensus 131 elE~~~~-------e~~~LEae~~elEkkleEle~kve------eLe~~~---eeqekqI~elE~~Lq~~Eeel~kak~E 194 (444)
++..+.. ++..++.+...+++++.+...++. .+.... +.+.-+.+=.++.+..+-..+..+..|
T Consensus 301 eL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~E 380 (434)
T PRK15178 301 EYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQ 380 (434)
T ss_pred HHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665543 344677777777777777666663 233333 444445555555566666666777777
Q ss_pred HhhhhHHh
Q 013359 195 ATSRSKEL 202 (444)
Q Consensus 195 ~~~~a~ei 202 (444)
+.+...-+
T Consensus 381 A~RQ~~YL 388 (434)
T PRK15178 381 ALRERQYL 388 (434)
T ss_pred HHhhhhhe
Confidence 77665544
No 230
>PRK04406 hypothetical protein; Provisional
Probab=92.94 E-value=0.88 Score=36.96 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMM 189 (444)
Q Consensus 140 ~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~ 189 (444)
..+++++.+||.++.-.+..+++|++.+.++++.|+.+..++..+.+.+.
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888888888888888888888888888888877777755443
No 231
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=92.91 E-value=3.3 Score=36.59 Aligned_cols=41 Identities=12% Similarity=0.264 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013359 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS 86 (444)
Q Consensus 46 eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e 86 (444)
++.+.=.++++|+.+++.+.-+....+.+|+++++.+++.+
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele 47 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELE 47 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455556666666555555555555555554444443
No 232
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=92.87 E-value=0.35 Score=50.49 Aligned_cols=21 Identities=10% Similarity=0.047 Sum_probs=14.5
Q ss_pred chhHHHHhhHHHHHHHHhhhh
Q 013359 282 EPHVQTLKTKTIEACEATKTA 302 (444)
Q Consensus 282 ~p~ve~~k~k~~p~~~~~r~~ 302 (444)
-|-+..-+.+|.++...+|..
T Consensus 289 S~~~l~kRr~~~~i~~~Lr~~ 309 (370)
T PF02994_consen 289 SPETLQKRRKFNPIKKKLREK 309 (370)
T ss_dssp THHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHc
Confidence 556667777888877776644
No 233
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=92.81 E-value=8 Score=38.99 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013359 177 TERALKVAEEEMMRAKFE 194 (444)
Q Consensus 177 lE~~Lq~~Eeel~kak~E 194 (444)
.+.+++.++..+..++..
T Consensus 184 ~~~~~~~~~~~l~~a~~~ 201 (327)
T TIGR02971 184 AQAEVKSALEAVQQAEAL 201 (327)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 234
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=92.79 E-value=11 Score=40.26 Aligned_cols=145 Identities=17% Similarity=0.219 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHhhhhhhHH------HHHHH
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKE---KAIQDKSE-RIVSLQKELSSLQKKETLNAA------EQVDK 113 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e---~~I~e~e~-~I~eLq~kI~sLqkK~s~~~~------~~i~~ 113 (444)
..++..++..+...+......+..+......+.... ......+. .|++|.++..+++..+..... -+.-.
T Consensus 238 ~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~ 317 (458)
T COG3206 238 EQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVA 317 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHh
Confidence 445555555555555555555555544444443333 11122222 255555555544433333211 23333
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 114 AHARADELEKQIDNL-KKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (444)
Q Consensus 114 ae~~i~eLe~qIe~L-kkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak 192 (444)
++.++.+++.++... ...+.....+...++.+.+.+++++..++..+..+- ..+.++.+++++.+..+..+..+-
T Consensus 318 ~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~----~~~~~l~~L~Re~~~~r~~ye~lL 393 (458)
T COG3206 318 LEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLP----KLQVQLRELEREAEAARSLYETLL 393 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhch----HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443322 233333333344444444445444444444443332 445555566666555554444333
No 235
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=92.70 E-value=0.38 Score=50.26 Aligned_cols=13 Identities=38% Similarity=0.703 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 013359 87 ERIVSLQKELSSL 99 (444)
Q Consensus 87 ~~I~eLq~kI~sL 99 (444)
..+.++..+|+++
T Consensus 105 ~~~~elkkEie~I 117 (370)
T PF02994_consen 105 KRIKELKKEIENI 117 (370)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444433
No 236
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=92.61 E-value=9.6 Score=41.54 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 161 EKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (444)
Q Consensus 161 eeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~ 193 (444)
+.+..+.+.++..++.++.+|+.+..++...+.
T Consensus 277 ~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~ 309 (511)
T PF09787_consen 277 EELKQERDHLQEEIQLLERQIEQLRAELQDLEA 309 (511)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555444444444333
No 237
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=92.58 E-value=12 Score=37.31 Aligned_cols=63 Identities=19% Similarity=0.246 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (444)
Q Consensus 125 Ie~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eee 187 (444)
|..|.-++.-+++.-+++.+...++-+-+.++...++-++..+-=++.++.+.+.+|+.++..
T Consensus 238 ia~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~ 300 (330)
T KOG2991|consen 238 IAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKG 300 (330)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444455555555555555555555555555555555555555444444433
No 238
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=92.55 E-value=1.5 Score=42.46 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhhhHHh
Q 013359 186 EEMMRAKFEATSRSKEL 202 (444)
Q Consensus 186 eel~kak~E~~~~a~ei 202 (444)
.+..++-++...++.++
T Consensus 193 ~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 193 DEYDRLLEEYSKLQEQI 209 (216)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 239
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=92.44 E-value=0.2 Score=56.58 Aligned_cols=58 Identities=24% Similarity=0.303 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
+...|.+++.+...|..++..++.++..++..+..++..+.+....|.++...+..+.
T Consensus 341 l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~ 398 (722)
T PF05557_consen 341 LARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALK 398 (722)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666555555555555555554443
No 240
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=92.36 E-value=4.1 Score=35.10 Aligned_cols=33 Identities=6% Similarity=0.228 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 013359 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKE 79 (444)
Q Consensus 47 L~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e 79 (444)
+.++-.+++.++.++..+.+++..++.++.+.+
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~ 37 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAE 37 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444554444444444444333333333
No 241
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=92.34 E-value=11 Score=42.56 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (444)
Q Consensus 124 qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel 188 (444)
.+..+....+...+.+..+..++.+++....++...+..+.....+....+..+...+...+..+
T Consensus 228 ~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l 292 (670)
T KOG0239|consen 228 NIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENL 292 (670)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444444444444444444444444444444444333
No 242
>PRK02119 hypothetical protein; Provisional
Probab=92.28 E-value=0.99 Score=36.46 Aligned_cols=51 Identities=29% Similarity=0.270 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (444)
Q Consensus 140 ~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~k 190 (444)
..+++++.+||.++.-.+..+++|+..+.++++.|+.+..++..+.+.+..
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777778888888888888888888888888888888777776554433
No 243
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=92.26 E-value=0.79 Score=36.47 Aligned_cols=51 Identities=27% Similarity=0.400 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (444)
Q Consensus 142 LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak 192 (444)
+++++.++|.++.-.+..++.|+..+.+++.+|+.++..+..+...+..+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777777777788888888888888888888888888777776665544
No 244
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=92.21 E-value=12 Score=36.23 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHH
Q 013359 167 NDEQKSKIRKTERAL 181 (444)
Q Consensus 167 ~eeqekqI~elE~~L 181 (444)
++.++.++..++.++
T Consensus 115 v~~l~~~l~~L~~ki 129 (219)
T TIGR02977 115 LAKLQEDIAKLQAKL 129 (219)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 245
>PRK09343 prefoldin subunit beta; Provisional
Probab=92.20 E-value=6.3 Score=34.70 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 155 DLSAKLEKLQKINDEQKSKIRKTERALKVAEE 186 (444)
Q Consensus 155 Ele~kveeLe~~~eeqekqI~elE~~Lq~~Ee 186 (444)
+++.+++.++..+..++++...++..+...+.
T Consensus 75 ~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~ 106 (121)
T PRK09343 75 ELKERKELLELRSRTLEKQEKKLREKLKELQA 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 246
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=92.03 E-value=1.2 Score=42.59 Aligned_cols=96 Identities=16% Similarity=0.279 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 013359 46 ELDQLKSKIRSLESHIDEKTQELKGK-DEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (444)
Q Consensus 46 eL~~l~~ki~~Lesqi~ele~eI~~k-~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~q 124 (444)
|.-.|+.+|+.|+.+++..+...... ...-........+.++.+.-.+.++..+.. +.......+....+.|...+.|
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~-~~~~~~~~l~~v~~Dl~~ie~Q 175 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE-GRSKSGKNLKSVREDLDTIEEQ 175 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc-cCCCCCCCHHHHHHHHHHHHHH
Confidence 55557777777777777776666552 111111233345667777777777777653 2222234455566666666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013359 125 IDNLKKESEKQQKEKEAL 142 (444)
Q Consensus 125 Ie~LkkelE~~~~e~~~L 142 (444)
|+.|+.=+...+.++..|
T Consensus 176 V~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 176 VDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666666665555544443
No 247
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=92.03 E-value=11 Score=35.60 Aligned_cols=140 Identities=24% Similarity=0.336 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 013359 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE----RIVSLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (444)
Q Consensus 47 L~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~----~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe 122 (444)
|..|+.||..|+-+....+..+..++.+...-......-.. ...++...-. .-..++..|+.+..-|+
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~--------dl~~qL~aAEtRCslLE 77 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQ--------DLSSQLSAAETRCSLLE 77 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccH--------HHHHHHHHHHHHHHHHH
Confidence 55677777777777777777777666665554433321111 1111111111 11245556666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 123 KQIDNLKKESEKQQKEKEALEARAIEAEK--------------KISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (444)
Q Consensus 123 ~qIe~LkkelE~~~~e~~~LEae~~elEk--------------kleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel 188 (444)
+|++-..+-+..-+.+....-.+...++. +++-++.+...|.....-.+.+|..++.++..-+.+-
T Consensus 78 KQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqR 157 (178)
T PF14073_consen 78 KQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQR 157 (178)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666655555444433333333322 2333444444444444455555666666555555443
Q ss_pred HHHHHH
Q 013359 189 MRAKFE 194 (444)
Q Consensus 189 ~kak~E 194 (444)
.-.+..
T Consensus 158 KlvQdk 163 (178)
T PF14073_consen 158 KLVQDK 163 (178)
T ss_pred HHHHHH
Confidence 333333
No 248
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.99 E-value=19 Score=38.27 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQK 94 (444)
Q Consensus 48 ~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~ 94 (444)
.++++++.++..++...+..-..=.+++++++..|+++...+-.+-.
T Consensus 148 ~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~ 194 (446)
T KOG4438|consen 148 KQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFN 194 (446)
T ss_pred HHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666665555566677777777766665544433
No 249
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=91.98 E-value=0.045 Score=61.72 Aligned_cols=11 Identities=36% Similarity=0.616 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 013359 44 KIELDQLKSKI 54 (444)
Q Consensus 44 ~~eL~~l~~ki 54 (444)
+.+|..++.++
T Consensus 67 k~~l~~Le~e~ 77 (722)
T PF05557_consen 67 KAQLNQLEYEL 77 (722)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 250
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=91.89 E-value=13 Score=36.28 Aligned_cols=48 Identities=15% Similarity=0.154 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 145 RAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (444)
Q Consensus 145 e~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak 192 (444)
+...++..+..+...+..+....+.++..+..++.+|..++.....+.
T Consensus 93 ~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 93 EKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555555554444333
No 251
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=91.84 E-value=26 Score=39.45 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTER 179 (444)
Q Consensus 111 i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~ 179 (444)
+.....++..+++.+..|+++++.....++.+..+-..+.+++.....++..++..+..++..++.+.+
T Consensus 582 ~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk 650 (786)
T PF05483_consen 582 ILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKK 650 (786)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455566666666666666666666666666665555555555555555554444444444444433
No 252
>PRK00295 hypothetical protein; Provisional
Probab=91.82 E-value=1.4 Score=35.06 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (444)
Q Consensus 142 LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~k 190 (444)
+++++.++|.++.-.+..+++|++.+.++++.|+.+..++..+...+..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888888888888888877777655444
No 253
>PRK02793 phi X174 lysis protein; Provisional
Probab=91.80 E-value=1.3 Score=35.66 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (444)
Q Consensus 141 ~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~k 190 (444)
.+++++.+||.++.-.+..+++|++.+.++++.|+.+..++..+.+.+..
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777888888888888888888888888888888888877777655444
No 254
>PRK00736 hypothetical protein; Provisional
Probab=91.73 E-value=1.3 Score=35.26 Aligned_cols=49 Identities=20% Similarity=0.313 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (444)
Q Consensus 142 LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~k 190 (444)
+++++.+||.++.-.+..+++|++.+..+++.|+.+.+++..+.+.+..
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888888888888888887777665543
No 255
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=91.70 E-value=5.2 Score=33.79 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 78 KEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (444)
Q Consensus 78 ~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~ 136 (444)
....+..+-.++..+++++.-+..+.+. .+.++..+......+..++..|...+....
T Consensus 15 ~~~~~~~k~~~~~~lE~k~~rl~~Ek~k-adqkyfa~mr~~d~l~~e~k~L~~~~~Ks~ 72 (96)
T PF08647_consen 15 LSEQADKKVKELTILEQKKLRLEAEKAK-ADQKYFAAMRSKDALDNEMKKLNTQLSKSS 72 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence 3333333334444444444433333322 123334444444444444444444444433
No 256
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.67 E-value=5 Score=39.20 Aligned_cols=73 Identities=25% Similarity=0.299 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 112 DKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (444)
Q Consensus 112 ~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~ 184 (444)
..+++++.++.++...|-++++.++.+.++.+.++..++.+...++.....+..+...++.+.++++..+.-.
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~ 210 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELP 210 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccch
Confidence 3444444444444444444444444444444444444444444444444444444444444444444444333
No 257
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=91.61 E-value=19 Score=42.68 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 156 LSAKLEKLQKINDEQKSKIRKTERALKVA 184 (444)
Q Consensus 156 le~kveeLe~~~eeqekqI~elE~~Lq~~ 184 (444)
+...+..++.........+..+...+...
T Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 855 (1047)
T PRK10246 827 IQQELAQLAQQLRENTTRQGEIRQQLKQD 855 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333
No 258
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=91.56 E-value=11 Score=42.86 Aligned_cols=46 Identities=11% Similarity=0.247 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (444)
Q Consensus 141 ~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~k 190 (444)
.+..+.+.++.++++++.++..+- +.+.++.+++++.+..+.....
T Consensus 343 ~l~~~~~~L~~~~~~l~~~~~~~p----~~e~~~~~L~R~~~~~~~lY~~ 388 (726)
T PRK09841 343 ALLEKRQTLEQERKRLNKRVSAMP----STQQEVLRLSRDVEAGRAVYLQ 388 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555444444443332 4455555566666555544433
No 259
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=91.55 E-value=2.5 Score=34.16 Aligned_cols=20 Identities=5% Similarity=0.258 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 013359 86 SERIVSLQKELSSLQKKETL 105 (444)
Q Consensus 86 e~~I~eLq~kI~sLqkK~s~ 105 (444)
...|.+....|+.|..++..
T Consensus 4 ~~~l~EKDe~Ia~L~eEGek 23 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEK 23 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 34455555555555544443
No 260
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.54 E-value=2.3 Score=41.44 Aligned_cols=78 Identities=21% Similarity=0.305 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (444)
Q Consensus 110 ~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eee 187 (444)
...+.+....++....++++++.+.+-.++.+++++.+++..+++.++.....|+.+...+......++.++..++..
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 344566666666666666666666666666666666666666666666665555555555555555555555555544
No 261
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=91.51 E-value=4 Score=35.14 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013359 56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSE 87 (444)
Q Consensus 56 ~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~ 87 (444)
.+-.+.+.+.+++......+..++..+.+.+.
T Consensus 7 ~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~ 38 (110)
T TIGR02338 7 NQLAQLQQLQQQLQAVATQKQQVEAQLKEAEK 38 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333333333
No 262
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=91.47 E-value=9.7 Score=34.02 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=17.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013359 42 PLKIELDQLKSKIRSLESHIDEKTQEL 68 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Lesqi~ele~eI 68 (444)
....++++|.++++.|..+=++.-.+.
T Consensus 24 ~v~~~l~~LEae~q~L~~kE~~r~~~~ 50 (126)
T PF09403_consen 24 SVESELNQLEAEYQQLEQKEEARYNEE 50 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777766655544443
No 263
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=91.46 E-value=18 Score=36.95 Aligned_cols=152 Identities=16% Similarity=0.203 Sum_probs=86.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhhhH--
Q 013359 41 SPLKIELDQLKSKIRSLESHID----EKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK-------KETLNA-- 107 (444)
Q Consensus 41 ~~l~~eL~~l~~ki~~Lesqi~----ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqk-------K~s~~~-- 107 (444)
..+..+-..++.++..+-.+-. -....++.++.++.-.+..+.+....+..-..+...+.. ......
T Consensus 131 ~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~ 210 (309)
T PF09728_consen 131 IKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKET 210 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666777666655444 333344445555544444444444433333333332222 111110
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 108 -----------AEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176 (444)
Q Consensus 108 -----------~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~e 176 (444)
.......+..+..-|.-....+++++.+.+.+..+|.+...+..+.+..+..+-++-.........+..
T Consensus 211 E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~ 290 (309)
T PF09728_consen 211 EKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEK 290 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 134444555555666666666777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 013359 177 TERALKVAEEEMMRAK 192 (444)
Q Consensus 177 lE~~Lq~~Eeel~kak 192 (444)
+..+++.++.-...++
T Consensus 291 ~~~k~~kLe~LcRaLQ 306 (309)
T PF09728_consen 291 LKKKIEKLEKLCRALQ 306 (309)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777666665444443
No 264
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.41 E-value=7 Score=44.45 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=15.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 62 DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (444)
Q Consensus 62 ~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~ 103 (444)
.+++..++-+..++++--..+.+..+.+..++..-+.|..++
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~ 602 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERY 602 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 265
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=91.35 E-value=25 Score=38.34 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 90 VSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE 133 (444)
Q Consensus 90 ~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE 133 (444)
++..+.++.++ +.+.+.+..+......+.+|...+..|...+.
T Consensus 333 Qe~~~~ld~Lq-Eksqile~sv~~l~~~lkDLd~~~~aLs~rld 375 (531)
T PF15450_consen 333 QETQSELDLLQ-EKSQILEDSVAELMRQLKDLDDHILALSWRLD 375 (531)
T ss_pred hhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34455555554 33333344444444455555555444444333
No 266
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=91.31 E-value=7.3 Score=33.18 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 013359 48 DQLKSKIRSLESHI 61 (444)
Q Consensus 48 ~~l~~ki~~Lesqi 61 (444)
..++.++..+..++
T Consensus 9 q~l~~~~~~l~~~~ 22 (105)
T cd00632 9 QQLQQQLQAYIVQR 22 (105)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 267
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=91.27 E-value=7.3 Score=32.02 Aligned_cols=75 Identities=24% Similarity=0.327 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (444)
Q Consensus 121 Le~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~ 198 (444)
+++-++.++.+.+.+..+.........+.+.++..--+.++.+...+-+++..-..++. .+|++|.+++.++..+
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~---~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQ---QYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Confidence 34455566666666666666666666666666666666666666666666655555554 3577888887776643
No 268
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=91.27 E-value=3.6 Score=35.07 Aligned_cols=35 Identities=9% Similarity=0.263 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 013359 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQD 84 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e 84 (444)
+-.+++.++.++..+.+++..++.++.+.+..+.+
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~E 38 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEE 38 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666555544444444444333
No 269
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=91.24 E-value=1.8 Score=37.32 Aligned_cols=59 Identities=8% Similarity=0.225 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 42 PLKIELDQLKSKIRSLESHIDEKTQELKGK--DEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Lesqi~ele~eI~~k--~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
+.+.+++.+...+...+..++.++++++.. .+++..++..|.+.+..+..+..+|+.+.
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345778888888888899999999999888 88888888888888888888888888775
No 270
>PRK04325 hypothetical protein; Provisional
Probab=91.22 E-value=1.6 Score=35.38 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (444)
Q Consensus 141 ~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~k 190 (444)
.+++++.+||.++.-.+..+++|++.+.+++++|+.+..++..+-+.+..
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777788888888888888888888888888777766554433
No 271
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=91.06 E-value=7.7 Score=44.06 Aligned_cols=28 Identities=11% Similarity=0.181 Sum_probs=11.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013359 66 QELKGKDEVVAQKEKAIQDKSERIVSLQ 93 (444)
Q Consensus 66 ~eI~~k~~eIk~~e~~I~e~e~~I~eLq 93 (444)
+-++-+++++.++..++.+.+..++++.
T Consensus 267 ~a~~fL~~qL~~l~~~L~~aE~~l~~fr 294 (726)
T PRK09841 267 QSLEFLQRQLPEVRSELDQAEEKLNVYR 294 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444443333
No 272
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=91.04 E-value=13 Score=34.51 Aligned_cols=139 Identities=14% Similarity=0.203 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------hHHHHHHHHHHHHHHHHHH
Q 013359 52 SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETL-------NAAEQVDKAHARADELEKQ 124 (444)
Q Consensus 52 ~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~-------~~~~~i~~ae~~i~eLe~q 124 (444)
.-|..+++.+.++-.=.++-..+...+...+.+...+|...-.+++.|+..-.. ++..=-...++.|.++=.+
T Consensus 6 ~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~ 85 (159)
T PF05384_consen 6 KTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEE 85 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHH
Confidence 334444444443333333333444444444444444444444444444322221 1111111234455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (444)
Q Consensus 125 Ie~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~k 190 (444)
...++-++-.+.++-..|..+..++|..+..+..-++..+.-......-++=+...+......+..
T Consensus 86 A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~ 151 (159)
T PF05384_consen 86 AHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIED 151 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555444444333
No 273
>PF15294 Leu_zip: Leucine zipper
Probab=91.02 E-value=8.8 Score=38.72 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=31.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 013359 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE 87 (444)
Q Consensus 40 ~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~ 87 (444)
...+..+|+.++.+-..|.+.+..++..-...-++-..++..+.++..
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344778888888888888887777777766655555555544444433
No 274
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=91.00 E-value=18 Score=36.12 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 158 AKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (444)
Q Consensus 158 ~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~ 198 (444)
..-..+.+.+......|++++..|..++.++..+..+....
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~ 226 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDP 226 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 34456677777777778888888888877777777766633
No 275
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=90.95 E-value=20 Score=36.49 Aligned_cols=104 Identities=15% Similarity=0.227 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~q 124 (444)
.+|+....+.+.|+.+.......+.+++--+......+.+...++.++..-...-+.+.+.. ..+-..+++++..++.+
T Consensus 151 QqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~-~~Kqes~eERL~QlqsE 229 (305)
T PF14915_consen 151 QQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKY-IGKQESLEERLSQLQSE 229 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444433333333221 12223344455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 125 IDNLKKESEKQQKEKEALEARAIEA 149 (444)
Q Consensus 125 Ie~LkkelE~~~~e~~~LEae~~el 149 (444)
---|..++++........+.-...+
T Consensus 230 N~LLrQQLddA~~K~~~kek~Vini 254 (305)
T PF14915_consen 230 NMLLRQQLDDAHNKADNKEKTVINI 254 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 5555555555444444333333333
No 276
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=90.78 E-value=3.9 Score=44.46 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013359 79 EKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 79 e~~I~e~e~~I~eLq~kI~sLq 100 (444)
...+.+++++|..++.+++.++
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~ 91 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLE 91 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554
No 277
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=90.76 E-value=13 Score=34.02 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 153 ISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (444)
Q Consensus 153 leEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~ 193 (444)
++.+.+++++|.+.+..++..|+++.+.+..++.++..+..
T Consensus 96 ie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 96 IEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444333
No 278
>PRK00846 hypothetical protein; Provisional
Probab=90.75 E-value=2.6 Score=34.53 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (444)
Q Consensus 140 ~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak 192 (444)
..+++++.++|.++.-.+..++.|++.+..++..|+.+..+++.+-+.+...+
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667777777888888888888888888888888888887777766555544
No 279
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=90.60 E-value=13 Score=33.67 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhH
Q 013359 50 LKSKIRSLESHIDEKTQELKGKD 72 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~~k~ 72 (444)
++..++.+...+.++...|....
T Consensus 3 l~~~~~~l~~~~~~l~~~l~~~~ 25 (202)
T PF01442_consen 3 LDDRLDSLSSRTEELEERLEELS 25 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCHCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554433
No 280
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=90.58 E-value=16 Score=34.80 Aligned_cols=114 Identities=14% Similarity=0.240 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEK 151 (444)
Q Consensus 72 ~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEk 151 (444)
+.-|..+...+++++.++.+.+.-+... ...+..++..+.-...-....+..++.+..-+......+...+.
T Consensus 59 eAaL~GKq~iveqLe~ev~EAe~vV~ee--------~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~ 130 (188)
T PF05335_consen 59 EAALAGKQQIVEQLEQEVREAEAVVQEE--------KASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQ 130 (188)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544433 23345556666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 152 KISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (444)
Q Consensus 152 kleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~ 193 (444)
-.......+.+-...++.-+.+++.|.+.+.....++.+.+.
T Consensus 131 ~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 131 VAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666655555544
No 281
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=90.46 E-value=21 Score=35.89 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhh
Q 013359 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELT 203 (444)
Q Consensus 142 LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ei~ 203 (444)
.+.+.+..+.+++....+++.+..++.+.++.+.++..++......+.+++.+.+++...+.
T Consensus 191 ~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~ 252 (269)
T PF05278_consen 191 REEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIK 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666667777777777777777777777777777666655443
No 282
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=90.41 E-value=7.5 Score=41.48 Aligned_cols=45 Identities=16% Similarity=0.318 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 013359 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIV 90 (444)
Q Consensus 46 eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~ 90 (444)
-+.+++.+..++..++.++..+.....-++..++..+.+.+..|.
T Consensus 286 ~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~ 330 (458)
T COG3206 286 TIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIA 330 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHH
Confidence 355666666666666666666666655555555555555555443
No 283
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.40 E-value=35 Score=38.45 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=36.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 013359 38 VDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDK 85 (444)
Q Consensus 38 ~~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~ 85 (444)
.....++.++..+.-.+.++..+.++...++.+...+|..+=..|...
T Consensus 96 k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~ 143 (660)
T KOG4302|consen 96 KIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGP 143 (660)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345589999999999999999888888888777666666666665554
No 284
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=90.33 E-value=38 Score=40.89 Aligned_cols=15 Identities=13% Similarity=0.209 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 013359 78 KEKAIQDKSERIVSL 92 (444)
Q Consensus 78 ~e~~I~e~e~~I~eL 92 (444)
++..+......|.++
T Consensus 242 ~e~e~~~~~~~i~ei 256 (1294)
T KOG0962|consen 242 LENELGPIEAKIEEI 256 (1294)
T ss_pred HHHHhhHHHHHHHHH
Confidence 333333333333333
No 285
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=90.28 E-value=11 Score=32.59 Aligned_cols=35 Identities=20% Similarity=0.477 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 013359 57 LESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVS 91 (444)
Q Consensus 57 Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~e 91 (444)
++..+.....++......+...+..+...+..|.+
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~ 46 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEE 46 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444333
No 286
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=90.19 E-value=2.9 Score=41.62 Aligned_cols=7 Identities=0% Similarity=0.107 Sum_probs=2.5
Q ss_pred CchHHHH
Q 013359 41 SPLKIEL 47 (444)
Q Consensus 41 ~~l~~eL 47 (444)
++...++
T Consensus 36 ~~~~~r~ 42 (263)
T PRK10803 36 GSVEDRV 42 (263)
T ss_pred CchHHHH
Confidence 3333333
No 287
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.18 E-value=28 Score=38.49 Aligned_cols=66 Identities=21% Similarity=0.299 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHHhhh
Q 013359 139 KEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK---TERALKVAEEEMMRAKFEATSRSKELTE 204 (444)
Q Consensus 139 ~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~e---lE~~Lq~~Eeel~kak~E~~~~a~ei~~ 204 (444)
+++.+.++..+..-...+...++++-.-.++.+.+++. .+..++.++.++.+++.+....+.+++.
T Consensus 299 L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~ 367 (557)
T COG0497 299 LEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSA 367 (557)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444554444443333333333333333333333332 3334455555666666555555555543
No 288
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=90.16 E-value=28 Score=36.92 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhccCCCh
Q 013359 165 KINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPP 212 (444)
Q Consensus 165 ~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ei~~~~g~wl~P 212 (444)
.++...+.--+.++.-+..+.+++.++..+-...+..=..-+|.|||.
T Consensus 353 ~Ev~RRr~~~~k~~~i~~~~~eeL~~l~eeE~~~Re~F~~e~GdyLP~ 400 (412)
T PF04108_consen 353 LEVERRRAVRDKMKKIIREANEELDKLREEEQRRREAFLKEYGDYLPE 400 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCh
Confidence 333333444455566666677777777776666665556668999997
No 289
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.12 E-value=15 Score=41.74 Aligned_cols=151 Identities=15% Similarity=0.138 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 013359 47 LDQLKSKIRSLESHIDEKTQELKGKDE------------VVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKA 114 (444)
Q Consensus 47 L~~l~~ki~~Lesqi~ele~eI~~k~~------------eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~a 114 (444)
+.-||.+.++|+.++..+++++.+++. |+-.+...=--+..++.+....++.||.+...+.. -++..
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk-~~e~q 467 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLK-VIENQ 467 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHH-HHHHH
Confidence 344677777777777777777666433 23333333333344444444444444444333211 01111
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 115 HARADELEKQIDNLKKESE----KQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (444)
Q Consensus 115 e~~i~eLe~qIe~LkkelE----~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~k 190 (444)
+++...+.+.+.+-..++- ...-+...+.-+.+++-.+++.+.-+++..+.++.-+...+++-..++..+++-..-
T Consensus 468 ~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~ 547 (861)
T PF15254_consen 468 KEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRT 547 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHH
Confidence 1111111111111111111 112223344445555555566666666666666666666666666666666555555
Q ss_pred HHHHHhhh
Q 013359 191 AKFEATSR 198 (444)
Q Consensus 191 ak~E~~~~ 198 (444)
++.-...+
T Consensus 548 LQ~Sma~l 555 (861)
T PF15254_consen 548 LQNSMAKL 555 (861)
T ss_pred HHHHHHHH
Confidence 55444443
No 290
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=90.11 E-value=13 Score=33.93 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELKGKDE 73 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~~k~~ 73 (444)
.+++++...++.++++++.+.++|..+..
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~ 34 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNA 34 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666665555555555544333
No 291
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=90.09 E-value=48 Score=39.46 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSL 92 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eL 92 (444)
..++..+...+..+......+..++......+......+.+....+..+
T Consensus 529 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (1047)
T PRK10246 529 QSRLDALEKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQEEQAL 577 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666665555555554444444444444444444444443333
No 292
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=89.94 E-value=30 Score=41.68 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=6.1
Q ss_pred CCCchHHHHHH
Q 013359 39 DSSPLKIELDQ 49 (444)
Q Consensus 39 ~~~~l~~eL~~ 49 (444)
+...|+..++.
T Consensus 166 Ep~~LKkkfD~ 176 (1294)
T KOG0962|consen 166 EPKNLKKKFDD 176 (1294)
T ss_pred ChHHHHHHHHH
Confidence 34456666655
No 293
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=89.93 E-value=20 Score=37.05 Aligned_cols=113 Identities=13% Similarity=0.142 Sum_probs=64.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAI 147 (444)
Q Consensus 68 I~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~ 147 (444)
+..+-..|-+.+..+++.-..+++-|.+-+.|+..+..+ -+++..+..=+......++.|+.-+...+++...++..++
T Consensus 73 lq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL-~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~ 151 (401)
T PF06785_consen 73 LQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKL-KNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLD 151 (401)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334445566677777777777777777766665433332 2444445555555555566666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 148 EAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (444)
Q Consensus 148 elEkkleEle~kveeLe~~~eeqekqI~elE~~L 181 (444)
++..++.|.+.+...|+.+.++.-...+.+.+..
T Consensus 152 ~l~~e~~Ekeeesq~LnrELaE~layqq~L~~ey 185 (401)
T PF06785_consen 152 ALQQECGEKEEESQTLNRELAEALAYQQELNDEY 185 (401)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6655555555555555555555544444444443
No 294
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=89.82 E-value=19 Score=36.12 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 160 LEKLQKINDEQKSKIRKTERALKVAEEEM 188 (444)
Q Consensus 160 veeLe~~~eeqekqI~elE~~Lq~~Eeel 188 (444)
.+.++.++.++-...-+-=+.+.-++.++
T Consensus 227 yEklE~EL~~lY~~Y~~kfRNl~yLe~ql 255 (267)
T PF10234_consen 227 YEKLEEELQKLYEIYVEKFRNLDYLEHQL 255 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33333333333333333333333344333
No 295
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=89.74 E-value=34 Score=37.31 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 013359 86 SERIVSLQKELSSLQ 100 (444)
Q Consensus 86 e~~I~eLq~kI~sLq 100 (444)
-..|.+|++.|..++
T Consensus 357 ~~~lkDLd~~~~aLs 371 (531)
T PF15450_consen 357 MRQLKDLDDHILALS 371 (531)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333333333333
No 296
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=89.62 E-value=34 Score=39.10 Aligned_cols=124 Identities=19% Similarity=0.250 Sum_probs=65.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 60 HIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEK 139 (444)
Q Consensus 60 qi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~ 139 (444)
+...-+..+.+...|+.++...-..++...+.-++-+.-.++.+- .++++....+.+.++...+++-.--++..++..
T Consensus 301 ~~~~~q~r~v~~srE~ael~~~E~~LE~D~Q~A~DhLnLV~~AlR--~QEKI~RYQ~Dl~Elt~RLEEQ~~VVeeA~e~~ 378 (1480)
T COG3096 301 QLAAEQYRHVDMSRELAELNGAEGDLEADYQAASDHLNLVQTALR--QQEKIERYQADLEELTIRLEEQNEVVEEANERQ 378 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHhhHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555555544444445555555554444443332 245555555566666665555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (444)
Q Consensus 140 ~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~E 185 (444)
++-+++....|.++.++.+.+.+.+..++-++.+--++.+.++.++
T Consensus 379 ~e~e~r~e~~E~EvD~lksQLADYQQALD~QQTRAlQYQQAi~ALe 424 (1480)
T COG3096 379 EENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALE 424 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666655555555555444444444443
No 297
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=89.62 E-value=33 Score=36.96 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 159 KLEKLQKINDEQKSKIRKTERALKVAE 185 (444)
Q Consensus 159 kveeLe~~~eeqekqI~elE~~Lq~~E 185 (444)
-++-|..+++..+++.-.+...++..+
T Consensus 479 ALdlLkrEKe~~EqefLslqeEfQk~e 505 (527)
T PF15066_consen 479 ALDLLKREKETREQEFLSLQEEFQKHE 505 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 298
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=89.60 E-value=33 Score=36.95 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHHHHHHHH
Q 013359 77 QKEKAIQDKSERIVSLQKELSSLQKKETLNA--AEQVDKAHARADELEKQ 124 (444)
Q Consensus 77 ~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~--~~~i~~ae~~i~eLe~q 124 (444)
.-+..|.++.-.-.-|+.++..||-++..-. -.-+.+++.+|.+|.+.
T Consensus 328 kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIed 377 (527)
T PF15066_consen 328 KQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIED 377 (527)
T ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555556666655543311 13344555555555443
No 299
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=89.59 E-value=18 Score=36.63 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013359 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQ 93 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq 93 (444)
....++++.+..+..++.++..+..... ..++...+..+...+..+...+
T Consensus 78 ~~~~~l~~~~a~l~~~~~~l~~~~~~~~--~~~i~~~~~~l~~ak~~l~~a~ 127 (331)
T PRK03598 78 PYENALMQAKANVSVAQAQLDLMLAGYR--DEEIAQARAAVKQAQAAYDYAQ 127 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666655555555443322 2333334444444333333333
No 300
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=89.56 E-value=14 Score=34.68 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013359 75 VAQKEKAIQDKSERIVSLQKEL 96 (444)
Q Consensus 75 Ik~~e~~I~e~e~~I~eLq~kI 96 (444)
+..++..|..++.++++|+..+
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~ 102 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTC 102 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 301
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=89.51 E-value=11 Score=41.81 Aligned_cols=56 Identities=27% Similarity=0.379 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sL 99 (444)
..+.++-..||..|+--|.+...++...++.+.+.=-.+..++.+==+|-.+|.+|
T Consensus 131 teqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeL 186 (861)
T KOG1899|consen 131 TEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSEL 186 (861)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHh
Confidence 33444444445555555555545554444444444333334444333444444444
No 302
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=89.42 E-value=37 Score=37.17 Aligned_cols=59 Identities=12% Similarity=0.248 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 129 KKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (444)
Q Consensus 129 kkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eee 187 (444)
..+++++-.++...+++......++..+..+++..++.++....++.+...++..++++
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDE 477 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDE 477 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444333333
No 303
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=89.33 E-value=17 Score=38.48 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013359 162 KLQKINDEQKSKIRKTE 178 (444)
Q Consensus 162 eLe~~~eeqekqI~elE 178 (444)
++++.++..+.+|..+|
T Consensus 302 di~E~~Es~qtRisklE 318 (395)
T PF10267_consen 302 DIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 304
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=89.25 E-value=23 Score=36.47 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 69 KGKDEVVAQKEKAIQDKSERIVSLQK 94 (444)
Q Consensus 69 ~~k~~eIk~~e~~I~e~e~~I~eLq~ 94 (444)
.-.++++.+.+..+.+.+..+.++++
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 305
>PF14282 FlxA: FlxA-like protein
Probab=88.97 E-value=4 Score=35.15 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 42 PLKIELDQLKSKIRSLESHIDEKTQ 66 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Lesqi~ele~ 66 (444)
.....|..|+..|..|..+|.++..
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3477888888888888888888877
No 306
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=88.93 E-value=1.7 Score=44.75 Aligned_cols=76 Identities=32% Similarity=0.401 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~ 184 (444)
..+...+..+.+++.++..|+.+.+....++..++.+....+.++.-....+..|..+...-...+..++.++..+
T Consensus 235 ~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 235 EQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNL 310 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhccc
Confidence 3344444555556666666666666666666666666666666666666666666666666555555555554444
No 307
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=88.90 E-value=38 Score=38.38 Aligned_cols=122 Identities=18% Similarity=0.157 Sum_probs=64.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 59 SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKE 138 (444)
Q Consensus 59 sqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e 138 (444)
++...+++++.+...++......+.+....+...+.+-..++.... .......++..+...-+..++.+..+...
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~-----~~~~~~~~~~~l~~~~~~~~~~i~~l~~~ 249 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG-----NYADLRRNIKPLEGLESTIKKKIQALQQE 249 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hhhhHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443432221 22344455555555555555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 139 KEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (444)
Q Consensus 139 ~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~E 185 (444)
+..++.+..++...+..+...+++.-.....+...+.+.+..+....
T Consensus 250 l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~ 296 (670)
T KOG0239|consen 250 LEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK 296 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666555555555555444
No 308
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=88.78 E-value=32 Score=36.01 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELK 69 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~ 69 (444)
.+...++.++..|+.++..+.+.++
T Consensus 53 ~q~~~~~~~~~~L~~ql~~~~~~~~ 77 (372)
T PF04375_consen 53 QQLQQLQQQLQALQQQLQQLQQQLE 77 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555444
No 309
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=88.73 E-value=17 Score=34.52 Aligned_cols=18 Identities=44% Similarity=0.654 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013359 116 ARADELEKQIDNLKKESE 133 (444)
Q Consensus 116 ~~i~eLe~qIe~LkkelE 133 (444)
+++..|..++..|+++++
T Consensus 110 ~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 110 EELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 310
>PRK11519 tyrosine kinase; Provisional
Probab=88.63 E-value=18 Score=41.06 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (444)
Q Consensus 142 LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~E 185 (444)
+..+...++.++++++.++..+.. .+.++.+++++.+..+
T Consensus 344 l~~~~~~L~~~~~~l~~~~~~lp~----~e~~~~~L~Re~~~~~ 383 (719)
T PRK11519 344 LLEKRKALEDEKAKLNGRVTAMPK----TQQEIVRLTRDVESGQ 383 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHH
Confidence 333444444444444444433332 3344444555544444
No 311
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=88.62 E-value=30 Score=39.14 Aligned_cols=26 Identities=23% Similarity=0.449 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 110 QVDKAHARADELEKQIDNLKKESEKQ 135 (444)
Q Consensus 110 ~i~~ae~~i~eLe~qIe~LkkelE~~ 135 (444)
.....++++..++.+++++..++...
T Consensus 157 ~~~~~eer~~kl~~~~qe~naeL~ra 182 (916)
T KOG0249|consen 157 HSGNIEERTRKLEEQLEELNAELQRA 182 (916)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555554444
No 312
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=88.48 E-value=7.1 Score=35.89 Aligned_cols=95 Identities=16% Similarity=0.249 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~q 124 (444)
..|+++.......+.++....-.+......+......++.++..|..+....+.+..+..-....-.....-.+.++.+|
T Consensus 44 e~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eq 123 (157)
T COG3352 44 EVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQ 123 (157)
T ss_pred HHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHH
Confidence 45566666665555555544444444444455555555555555555555444444443333222222222255566666
Q ss_pred HHHHHHHHHHHHHHH
Q 013359 125 IDNLKKESEKQQKEK 139 (444)
Q Consensus 125 Ie~LkkelE~~~~e~ 139 (444)
|.+++..++...+++
T Consensus 124 V~el~~i~emv~~d~ 138 (157)
T COG3352 124 VNELKMIVEMVIKDL 138 (157)
T ss_pred HHHHHHHHHHHhccc
Confidence 666665555544443
No 313
>PF14282 FlxA: FlxA-like protein
Probab=88.38 E-value=3.8 Score=35.27 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 013359 79 EKAIQDKSERIVSLQKELSSLQK 101 (444)
Q Consensus 79 e~~I~e~e~~I~eLq~kI~sLqk 101 (444)
+..|..+..+|..|+.+|..|..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555555555555555555544
No 314
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.32 E-value=45 Score=36.79 Aligned_cols=92 Identities=11% Similarity=0.111 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH----------HHHHHHHHHHH
Q 013359 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAA----------EQVDKAHARAD 119 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~----------~~i~~ae~~i~ 119 (444)
++..+.++..+++.--|+|.+.+++++.++..-..+.+-+.+...+-++|.++...+-. .-..+.+.++.
T Consensus 586 ~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq 665 (741)
T KOG4460|consen 586 IQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQ 665 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555444455444433211 22334445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013359 120 ELEKQIDNLKKESEKQQKEKEA 141 (444)
Q Consensus 120 eLe~qIe~LkkelE~~~~e~~~ 141 (444)
-++.+++.|..-+|.......+
T Consensus 666 ~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 666 LIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666655554444
No 315
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=88.22 E-value=37 Score=35.72 Aligned_cols=26 Identities=8% Similarity=0.261 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHH
Q 013359 48 DQLKSKIRSLESHIDEKTQELKGKDE 73 (444)
Q Consensus 48 ~~l~~ki~~Lesqi~ele~eI~~k~~ 73 (444)
..+...+..++..+..+..+++....
T Consensus 92 ~~~~~~~~~~~~~l~~~~~q~~~l~~ 117 (421)
T TIGR03794 92 PELRERLQESYQKLTQLQEQLEEVRN 117 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777666544
No 316
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=88.13 E-value=37 Score=35.65 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=77.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhh------------h
Q 013359 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE--RIVSLQKELSSLQKKE------------T 104 (444)
Q Consensus 39 ~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~--~I~eLq~kI~sLqkK~------------s 104 (444)
....|.+|++-++.=-.-|+..+.....+|.....-...++..+.++.. .|......+..-...+ .
T Consensus 117 ve~eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~ 196 (384)
T PF03148_consen 117 VEKELLKEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLSDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNS 196 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcccCCcccccccC
Confidence 3445666666666666666666666666666655555555655555544 2222222221110000 0
Q ss_pred hh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 105 LN-------AAEQVDKAHARADELEKQIDNLKKESEKQQKEKE--------ALEARAIEAEKKISDLSAKLEKLQKINDE 169 (444)
Q Consensus 105 ~~-------~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~--------~LEae~~elEkkleEle~kveeLe~~~ee 169 (444)
+. ....+..++..+.....--..+...+.....++. .+..+..+.+.-..+++..+.....++.+
T Consensus 197 ~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~ 276 (384)
T PF03148_consen 197 STPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAE 276 (384)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 00 0133333433333322222222222222222222 45555666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013359 170 QKSKIRKTERALKVAEEEMMRAKFEATS 197 (444)
Q Consensus 170 qekqI~elE~~Lq~~Eeel~kak~E~~~ 197 (444)
++..|..++..|..-..-++-++..+..
T Consensus 277 ~e~~i~~L~~ai~~k~~~lkvaqTRL~~ 304 (384)
T PF03148_consen 277 MEKNIEDLEKAIRDKEGPLKVAQTRLEN 304 (384)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 6666666666666666666666655553
No 317
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=88.02 E-value=12 Score=37.04 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhcCCCc
Q 013359 370 HQVQASVQEMLKKHELTS 387 (444)
Q Consensus 370 ~q~q~~~~~~~~~~e~~~ 387 (444)
..+=-++-.++-.|-+++
T Consensus 202 eR~~ls~~r~vL~nr~~R 219 (248)
T PF08172_consen 202 ERIFLSLTRFVLSNRTTR 219 (248)
T ss_pred HHHHHHHHHHHhcChhhH
Confidence 344444445556666655
No 318
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=87.90 E-value=7.2 Score=31.18 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013359 117 RADELEKQIDNLKKESEKQQKE 138 (444)
Q Consensus 117 ~i~eLe~qIe~LkkelE~~~~e 138 (444)
+++.+-.++.+|+.+++.+..+
T Consensus 41 ~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 41 QLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 319
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.86 E-value=42 Score=35.89 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIND 168 (444)
Q Consensus 111 i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~e 168 (444)
+.+++....+++..+.+|+...+++..+......++..+..++...+.....+.+.+.
T Consensus 306 ~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lr 363 (502)
T KOG0982|consen 306 DQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILR 363 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666666666666555555555555554444444444444433333
No 320
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=87.81 E-value=18 Score=32.68 Aligned_cols=75 Identities=20% Similarity=0.288 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 013359 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQI 125 (444)
Q Consensus 46 eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qI 125 (444)
++..++..++..+..+.....+|..++..|..+....+.++..-..|...+.. +...+..-+.+|
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~---------------~~~~l~~re~~i 84 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQ---------------ARALLAQREQRI 84 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHH
Confidence 44455555555555555555555554444444444444444433333333322 233344455666
Q ss_pred HHHHHHHHHH
Q 013359 126 DNLKKESEKQ 135 (444)
Q Consensus 126 e~LkkelE~~ 135 (444)
.+|+.|.+.+
T Consensus 85 ~rL~~ENe~l 94 (135)
T TIGR03495 85 ERLKRENEDL 94 (135)
T ss_pred HHHHHcCHHH
Confidence 6666665554
No 321
>PRK04406 hypothetical protein; Provisional
Probab=87.50 E-value=5.2 Score=32.48 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 149 AEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (444)
Q Consensus 149 lEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~k 190 (444)
++.++.+++.++.-++..++++...+-++...|..++.++..
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~ 50 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKY 50 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333333333
No 322
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=87.43 E-value=4.4 Score=44.39 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 126 DNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (444)
Q Consensus 126 e~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~ 193 (444)
.++...++....++.++|.+.+++..++++++.++++++..+...+..+..++..+++++..+..+.+
T Consensus 82 ~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 82 REQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 33444444555555566666666666666666666666666666666666666666666555444433
No 323
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=87.40 E-value=22 Score=39.20 Aligned_cols=82 Identities=23% Similarity=0.291 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 013359 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSK 200 (444)
Q Consensus 121 Le~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ 200 (444)
+-.+++.|-.+.-++-.-+.+|+--+++|=.++.++..+.+-|+.++...+..-..++++|..+|++|.+++.++.....
T Consensus 299 MGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~ 378 (832)
T KOG2077|consen 299 MGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQ 378 (832)
T ss_pred chHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666667778888888889999999999999999999888899999999999999999998886644
Q ss_pred Hh
Q 013359 201 EL 202 (444)
Q Consensus 201 ei 202 (444)
+.
T Consensus 379 ~~ 380 (832)
T KOG2077|consen 379 KA 380 (832)
T ss_pred hh
Confidence 43
No 324
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=87.36 E-value=27 Score=33.14 Aligned_cols=45 Identities=9% Similarity=0.100 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHH
Q 013359 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQ--KEKAIQDKS 86 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~--~e~~I~e~e 86 (444)
+.+.+.-.|...++..-.+....+..|-...++|=. .+..|++.+
T Consensus 30 ~tR~dVi~L~e~Ld~~L~~~~ar~~gIcpvr~~ly~~~F~ELIRQVT 76 (189)
T PF10211_consen 30 ATRQDVIQLQEWLDKMLQQRQARETGICPVREELYSQCFDELIRQVT 76 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 445566666666655544444444455444444433 244444444
No 325
>PRK14011 prefoldin subunit alpha; Provisional
Probab=87.32 E-value=15 Score=33.60 Aligned_cols=41 Identities=10% Similarity=0.121 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013359 53 KIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQ 93 (444)
Q Consensus 53 ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq 93 (444)
++.++-..++.+.++++.+...|..++..+.+...-|..|+
T Consensus 4 elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~ 44 (144)
T PRK14011 4 ELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESME 44 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444544445555555555555554444
No 326
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=87.31 E-value=14 Score=29.81 Aligned_cols=24 Identities=42% Similarity=0.375 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 76 AQKEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 76 k~~e~~I~e~e~~I~eLq~kI~sL 99 (444)
.+++..|...=..|+.|+-+++.|
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeL 30 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEEL 30 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 327
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=87.13 E-value=42 Score=35.17 Aligned_cols=32 Identities=31% Similarity=0.515 Sum_probs=16.4
Q ss_pred CCCchHHHHHHHHHHHHHHHH-HHHHHHHhhhh
Q 013359 39 DSSPLKIELDQLKSKIRSLES-HIDEKTQELKG 70 (444)
Q Consensus 39 ~~~~l~~eL~~l~~ki~~Les-qi~ele~eI~~ 70 (444)
....+..-++.|..++.-|.. .++.++..+..
T Consensus 240 ~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~ 272 (388)
T PF04912_consen 240 SSSPLLPALNELERQLSLLDPAKLDSIERRLKS 272 (388)
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345556666666666666632 33444444333
No 328
>PRK15396 murein lipoprotein; Provisional
Probab=87.08 E-value=7.9 Score=31.78 Aligned_cols=25 Identities=24% Similarity=0.618 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 46 ELDQLKSKIRSLESHIDEKTQELKG 70 (444)
Q Consensus 46 eL~~l~~ki~~Lesqi~ele~eI~~ 70 (444)
++++|..+++.|.++++.+.++++.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~ 50 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNA 50 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444444444333
No 329
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=87.07 E-value=28 Score=35.54 Aligned_cols=27 Identities=4% Similarity=0.108 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 013359 49 QLKSKIRSLESHIDEKTQELKGKDEVV 75 (444)
Q Consensus 49 ~l~~ki~~Lesqi~ele~eI~~k~~eI 75 (444)
..+..+.+++.++...+.+++.....+
T Consensus 83 ~~~~~l~~a~a~l~~a~a~l~~~~~~~ 109 (346)
T PRK10476 83 PYELTVAQAQADLALADAQIMTTQRSV 109 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777666665544433
No 330
>PRK11519 tyrosine kinase; Provisional
Probab=87.06 E-value=45 Score=37.88 Aligned_cols=14 Identities=14% Similarity=0.022 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhcC
Q 013359 371 QVQASVQEMLKKHE 384 (444)
Q Consensus 371 q~q~~~~~~~~~~e 384 (444)
.+...+...-..+.
T Consensus 624 ~~~~ll~~l~~~yD 637 (719)
T PRK11519 624 RFAELVNWASKNYD 637 (719)
T ss_pred HHHHHHHHHHhcCC
Confidence 34444544444444
No 331
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=87.02 E-value=11 Score=32.08 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013359 78 KEKAIQDKSERIVSLQKEL 96 (444)
Q Consensus 78 ~e~~I~e~e~~I~eLq~kI 96 (444)
++..-.+....+.+++.+-
T Consensus 34 ld~~~r~l~~~~e~lr~~r 52 (108)
T PF02403_consen 34 LDQERRELQQELEELRAER 52 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 332
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=86.97 E-value=15 Score=30.28 Aligned_cols=62 Identities=15% Similarity=0.249 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKT 177 (444)
Q Consensus 116 ~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~el 177 (444)
.+|..+=..|.-|+-+++.++.+...+..+...+.....++..+.+.+..+....+.+++.+
T Consensus 11 ~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444444444444444444444433
No 333
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=86.89 E-value=32 Score=34.73 Aligned_cols=27 Identities=19% Similarity=0.433 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 74 VVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 74 eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
-+++.++.+.+.+.+|.+|.++|..++
T Consensus 76 kLkes~~~l~dRetEI~eLksQL~RMr 102 (305)
T PF15290_consen 76 KLKESENRLHDRETEIDELKSQLARMR 102 (305)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344466666666666666666666554
No 334
>PRK11546 zraP zinc resistance protein; Provisional
Probab=86.84 E-value=11 Score=34.31 Aligned_cols=35 Identities=9% Similarity=-0.042 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK 78 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~ 78 (444)
.++.+.++.-.++...+...+.++|-.+..|++.+
T Consensus 46 ~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnAL 80 (143)
T PRK11546 46 TEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNAL 80 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666666666666666666666555
No 335
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=86.82 E-value=40 Score=34.53 Aligned_cols=12 Identities=42% Similarity=0.626 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 013359 44 KIELDQLKSKIR 55 (444)
Q Consensus 44 ~~eL~~l~~ki~ 55 (444)
...|++++.++.
T Consensus 54 A~~ld~~~~kl~ 65 (301)
T PF06120_consen 54 ADSLDELKEKLK 65 (301)
T ss_pred HHhhHHHHHHHH
Confidence 344444444443
No 336
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=86.82 E-value=4.9 Score=35.10 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013359 114 AHARADELEKQIDNLKKESEKQQ 136 (444)
Q Consensus 114 ae~~i~eLe~qIe~LkkelE~~~ 136 (444)
++.++..++++++.+.+.+..+.
T Consensus 91 l~~~~~~l~~~~~~l~~~l~~l~ 113 (126)
T TIGR00293 91 LKKRIEELEKAIEKLQEALAELA 113 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 337
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=86.72 E-value=23 Score=31.69 Aligned_cols=10 Identities=20% Similarity=0.322 Sum_probs=3.7
Q ss_pred HHHhhhhhHH
Q 013359 64 KTQELKGKDE 73 (444)
Q Consensus 64 le~eI~~k~~ 73 (444)
+.++++...+
T Consensus 48 v~kql~~vs~ 57 (126)
T PF07889_consen 48 VSKQLEQVSE 57 (126)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 338
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=86.54 E-value=20 Score=33.96 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKG 70 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~ 70 (444)
...++.++.++..++.++.++...|+.
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 339
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=86.47 E-value=20 Score=31.36 Aligned_cols=34 Identities=35% Similarity=0.508 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEA 144 (444)
Q Consensus 111 i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEa 144 (444)
...++.++..+++.++.+++.+..+..++..++.
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~ 122 (129)
T cd00584 89 IEFLDKKIEELTKQIEKLQKELAKLKDQINTLEA 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555444444444433
No 340
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=86.47 E-value=12 Score=40.66 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 70 GKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKET 104 (444)
Q Consensus 70 ~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s 104 (444)
..+..+..++++|.+.+.+++.++++++.++..+.
T Consensus 68 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 102 (525)
T TIGR02231 68 PDPERLAELRKQIRELEAELRDLEDRGDALKALAK 102 (525)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999988875553
No 341
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=86.17 E-value=36 Score=37.22 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013359 155 DLSAKLEKLQKINDEQKSKIR 175 (444)
Q Consensus 155 Ele~kveeLe~~~eeqekqI~ 175 (444)
.+...+..|++++..+...|+
T Consensus 491 ~MSEHLasmNeqL~~Q~eeI~ 511 (518)
T PF10212_consen 491 MMSEHLASMNEQLAKQREEIQ 511 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 342
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=86.07 E-value=60 Score=35.88 Aligned_cols=154 Identities=14% Similarity=0.205 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 013359 44 KIELDQLKSKIRSLE-SHIDEKTQELKGKDEVVA-----QKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHAR 117 (444)
Q Consensus 44 ~~eL~~l~~ki~~Le-sqi~ele~eI~~k~~eIk-----~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~ 117 (444)
....+..+++-+.+. ..+.+++..+.+.++.+. .....+.+.+..|.....+|..+...++.+ ......-..+
T Consensus 59 ~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L-~~~e~~nr~~ 137 (560)
T PF06160_consen 59 EEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDEL-LESEEKNREE 137 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 334455555555554 444555544444433322 223334444444444444444443333332 1222233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 118 ADELEKQIDNLKKESEKQQKEKE----ALEARAIEAEKKISDLSAKL-----EKLQKINDEQKSKIRKTERALKVAEEEM 188 (444)
Q Consensus 118 i~eLe~qIe~LkkelE~~~~e~~----~LEae~~elEkkleEle~kv-----eeLe~~~eeqekqI~elE~~Lq~~Eeel 188 (444)
+..+...-..+++.+......-. .++.++..++....+..... ......+..++..+..++..+..+=.-+
T Consensus 138 i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~ 217 (560)
T PF06160_consen 138 IEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLY 217 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 55555555555555444433322 55555555555544443322 3344444455555555555555444444
Q ss_pred HHHHHHHhhh
Q 013359 189 MRAKFEATSR 198 (444)
Q Consensus 189 ~kak~E~~~~ 198 (444)
..++.+.-..
T Consensus 218 ~~l~~~~P~q 227 (560)
T PF06160_consen 218 KELQKEFPDQ 227 (560)
T ss_pred HHHHHHhHHH
Confidence 4444444333
No 343
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=86.06 E-value=12 Score=38.27 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKI----------NDEQKSKIRKTERALKVAEEEMMRA 191 (444)
Q Consensus 122 e~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~----------~eeqekqI~elE~~Lq~~Eeel~ka 191 (444)
+++-++|.++++-.+++..-|+...-.--.+++.+.+.+.+|+.. +..++.++.++.+.-..++.++.++
T Consensus 6 QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELARa 85 (351)
T PF07058_consen 6 QNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELARA 85 (351)
T ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444433333322233344444444444443 3478888888888888899999998
Q ss_pred HHHHhhhhH
Q 013359 192 KFEATSRSK 200 (444)
Q Consensus 192 k~E~~~~a~ 200 (444)
+.-+++.+-
T Consensus 86 KV~aNRVA~ 94 (351)
T PF07058_consen 86 KVSANRVAT 94 (351)
T ss_pred hhhhhhhhh
Confidence 888776643
No 344
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=86.04 E-value=42 Score=35.73 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sL 99 (444)
....+.+++-++++-+++.+.+..+..-...+-+.+...+..+|..|+.|+.+...+
T Consensus 11 ~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l 67 (459)
T KOG0288|consen 11 NDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQL 67 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666666666666666666666666655544
No 345
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=85.75 E-value=6.7 Score=43.07 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 131 ESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (444)
Q Consensus 131 elE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~ 198 (444)
.++++..-++...-++-++|.+.+++++++++++.+++++++.|..-+.++..++.++..++....++
T Consensus 80 ~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 80 ILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 34555555555556666666666666666666666666666666666666666665555555544433
No 346
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=85.72 E-value=47 Score=34.30 Aligned_cols=28 Identities=11% Similarity=0.397 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLKKESEKQQKEKE 140 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~LkkelE~~~~e~~ 140 (444)
++.++...|..++..|++.+....-+..
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~K 103 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIK 103 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 4444444444444444444444444433
No 347
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.68 E-value=6.8 Score=31.62 Aligned_cols=52 Identities=29% Similarity=0.354 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (444)
Q Consensus 141 ~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak 192 (444)
.+++++.++|-++..-+.-+++|+..+.+++..++.+..++..+-+.+...+
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4666777777777777777777777777777777777776666655544433
No 348
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=85.59 E-value=11 Score=39.02 Aligned_cols=59 Identities=19% Similarity=0.307 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK 102 (444)
.+|.+++..+..+|++.-....+.+++...-.+..-+.|..-...+.++...|..+++.
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~ 61 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKS 61 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35666777777777777777777777777666667777776666777777766666443
No 349
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=85.57 E-value=10 Score=39.17 Aligned_cols=27 Identities=11% Similarity=-0.058 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 356 RAYGKFLKSATTYHHQVQASVQEMLKK 382 (444)
Q Consensus 356 ~~~~~~~~~a~~~h~q~q~~~~~~~~~ 382 (444)
..|..++.-.+.+++.--=+-...|.+
T Consensus 217 ~~~~~~vq~lQ~~YQ~~~Ly~l~AlG~ 243 (330)
T PF07851_consen 217 SLYQSVVQFLQYRYQRGCLYRLRALGK 243 (330)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 455566666666666555555566654
No 350
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=85.53 E-value=16 Score=29.13 Aligned_cols=58 Identities=16% Similarity=0.347 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE 133 (444)
Q Consensus 69 ~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE 133 (444)
+++...|..++..|.+.+..|..|+-++.++. .........++...+.++..|++++.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p-------~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLP-------PSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35566666666666666666666666665442 23344556666666666666665553
No 351
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=85.42 E-value=15 Score=29.38 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 145 RAIEAEKKISDLSAKLEKLQKINDEQKSK 173 (444)
Q Consensus 145 e~~elEkkleEle~kveeLe~~~eeqekq 173 (444)
+...+..++...-..+.+|..+++.+.++
T Consensus 34 ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 34 ERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444433333333
No 352
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=85.38 E-value=43 Score=33.62 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013359 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS 86 (444)
Q Consensus 48 ~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e 86 (444)
..++..+.+.+.++..++.++......+.+.+..+...+
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLK 114 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666665555554444444333333333
No 353
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=85.36 E-value=19 Score=31.11 Aligned_cols=19 Identities=16% Similarity=0.464 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 013359 52 SKIRSLESHIDEKTQELKG 70 (444)
Q Consensus 52 ~ki~~Lesqi~ele~eI~~ 70 (444)
..+.+++.+++.+.+.+..
T Consensus 6 ~~~~~l~~~i~~l~~~~~~ 24 (129)
T cd00890 6 AQLQQLQQQLEALQQQLQK 24 (129)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444433333333
No 354
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=85.33 E-value=20 Score=29.76 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 165 KINDEQKSKIRKTERALKVAEEEMMRAKF 193 (444)
Q Consensus 165 ~~~eeqekqI~elE~~Lq~~Eeel~kak~ 193 (444)
...+..+..+..++..+..++..+..++.
T Consensus 69 ~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 69 ERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 355
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=85.18 E-value=40 Score=33.07 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhcCCCchhccchHHHHHHHHH
Q 013359 371 QVQASVQEMLKKHELTSPLATKELEWFAASAL 402 (444)
Q Consensus 371 q~q~~~~~~~~~~e~~~~~a~~~~~w~~a~a~ 402 (444)
.+|.+|-..++.+|= .-.++||+||+|
T Consensus 182 ~ly~~ia~~ik~se~-----~~~~lwyi~Y~v 208 (230)
T PF03904_consen 182 HLYKAIASKIKASES-----FWTYLWYIAYLV 208 (230)
T ss_pred HHHHHHHHHHhhhHh-----HHHHHHHHHHhh
Confidence 344444444444332 223467777754
No 356
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=85.08 E-value=24 Score=33.22 Aligned_cols=72 Identities=14% Similarity=0.261 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (444)
Q Consensus 111 i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~E 185 (444)
.....+.|+.|..++...+........++..... .+.+....+......++..+......|..++.+|..+.
T Consensus 105 ~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~---~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~ 176 (184)
T PF05791_consen 105 KEDLKEIIEDLQDQIQKNQDKVQALINELNDFKD---KLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 3344445555555555555444444433332222 22223333333334444444444444444444444443
No 357
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=84.72 E-value=21 Score=29.55 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013359 78 KEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 78 ~e~~I~e~e~~I~eLq~kI~sL 99 (444)
....+..+...+.++...+.+.
T Consensus 17 ~~~~l~~L~~~~~~~~~~~~~~ 38 (123)
T PF02050_consen 17 AEEQLEQLQQERQEYQEQLSES 38 (123)
T ss_dssp HHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3334444444444444444333
No 358
>PRK10869 recombination and repair protein; Provisional
Probab=84.67 E-value=58 Score=35.95 Aligned_cols=13 Identities=8% Similarity=0.072 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 013359 111 VDKAHARADELEK 123 (444)
Q Consensus 111 i~~ae~~i~eLe~ 123 (444)
+...++|+..++.
T Consensus 298 l~~ie~Rl~~l~~ 310 (553)
T PRK10869 298 LAELEQRLSKQIS 310 (553)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 359
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=84.60 E-value=22 Score=29.69 Aligned_cols=47 Identities=30% Similarity=0.431 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK 165 (444)
Q Consensus 119 ~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~ 165 (444)
..++.+|+.+......+..++...+++.+.++.-..++...+.....
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e 81 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIE 81 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666665555555555666666666666666665555544433
No 360
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=84.57 E-value=53 Score=33.93 Aligned_cols=86 Identities=15% Similarity=0.164 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 117 ~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
-+..-|.-....+.+++.+.+.+..+|.+.-....+-+..+..+=.+-.....+.+.+..+...|+.++.-...++.+-+
T Consensus 237 tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcRALq~ern 316 (391)
T KOG1850|consen 237 TLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRALQTERN 316 (391)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444445666678888888888888888888888888888888888888888889999999999999887777777777
Q ss_pred hhhHHh
Q 013359 197 SRSKEL 202 (444)
Q Consensus 197 ~~a~ei 202 (444)
++...+
T Consensus 317 el~~~~ 322 (391)
T KOG1850|consen 317 ELNKKL 322 (391)
T ss_pred cHHHHH
Confidence 664433
No 361
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=84.54 E-value=32 Score=31.40 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 147 IEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (444)
Q Consensus 147 ~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~ 184 (444)
-.+|..+....+.+..|+..+..+..+|..|+..+...
T Consensus 93 ~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~ 130 (146)
T PF08702_consen 93 YILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQ 130 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555555544443
No 362
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=84.47 E-value=31 Score=31.14 Aligned_cols=10 Identities=40% Similarity=0.561 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 013359 50 LKSKIRSLES 59 (444)
Q Consensus 50 l~~ki~~Les 59 (444)
+...+..++.
T Consensus 10 l~~~~~~l~~ 19 (202)
T PF01442_consen 10 LSSRTEELEE 19 (202)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 363
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=84.43 E-value=6.4 Score=31.27 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 150 EKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (444)
Q Consensus 150 EkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~ 193 (444)
+.++.+++.++.-++..++++...+-++...|..++.++..+..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444333
No 364
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=84.37 E-value=18 Score=31.14 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHH
Q 013359 57 LESHIDEKTQELKGKDEVVAQKEKAI 82 (444)
Q Consensus 57 Lesqi~ele~eI~~k~~eIk~~e~~I 82 (444)
+..+...+.++|+.....+..+...+
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~ 29 (129)
T cd00890 4 LAAQLQQLQQQLEALQQQLQKLEAQL 29 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333333
No 365
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=84.07 E-value=36 Score=31.69 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013359 78 KEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 78 ~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
+++..-.....+++|..++..+.
T Consensus 49 ~e~~~~~~~a~~~eLr~el~~~~ 71 (177)
T PF07798_consen 49 LENQEYLFKAAIAELRSELQNSR 71 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666665543
No 366
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=84.00 E-value=22 Score=29.17 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~ 97 (444)
.-+++++.-+..++.+++.+..++++.-.+.+++-..++.+.+.+..+-+.+.
T Consensus 26 ~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~ 78 (90)
T PF06103_consen 26 KTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVA 78 (90)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34555555555555555555555555444444444444444444444444333
No 367
>PRK02119 hypothetical protein; Provisional
Probab=83.95 E-value=8.9 Score=30.94 Aligned_cols=46 Identities=11% Similarity=0.180 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 148 EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (444)
Q Consensus 148 elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~ 193 (444)
.++.++.+++.++.-++..++++...+-++.+.|..++.++..+..
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555444444444444444444433
No 368
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=83.87 E-value=50 Score=33.14 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013359 117 RADELEKQIDNLKKESEKQ 135 (444)
Q Consensus 117 ~i~eLe~qIe~LkkelE~~ 135 (444)
++..++.++..++++++..
T Consensus 143 ~i~~l~~~~~~~~~~~~~~ 161 (301)
T PF14362_consen 143 EIAALQAEIDQLEKEIDRA 161 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444333333
No 369
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.77 E-value=66 Score=34.45 Aligned_cols=21 Identities=33% Similarity=0.213 Sum_probs=10.3
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 013359 42 PLKIELDQLKSKIRSLESHID 62 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Lesqi~ 62 (444)
.++.+--+|......|+.+..
T Consensus 247 rlkqEnlqLvhR~h~LEEq~r 267 (502)
T KOG0982|consen 247 RLKQENLQLVHRYHMLEEQRR 267 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544443
No 370
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=83.75 E-value=76 Score=35.12 Aligned_cols=22 Identities=14% Similarity=0.412 Sum_probs=10.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH
Q 013359 349 PYTKKVVRAYGKFLKSATTYHH 370 (444)
Q Consensus 349 Py~~~~~~~~~~~~~~a~~~h~ 370 (444)
|..-.--..|..+++.+..|-.
T Consensus 332 P~~~~~l~~f~~v~~~~~~Fe~ 353 (593)
T PF06248_consen 332 PTSASELQEFEEVLESVEEFEE 353 (593)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555554443
No 371
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=83.72 E-value=13 Score=31.51 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 162 KLQKINDEQKSKIRKTERALKVAEE 186 (444)
Q Consensus 162 eLe~~~eeqekqI~elE~~Lq~~Ee 186 (444)
.+.....+...++..++.++..++.
T Consensus 71 ~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444333333
No 372
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=83.56 E-value=30 Score=39.81 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhcCCCchhcc
Q 013359 371 QVQASVQEMLKKHELTSPLAT 391 (444)
Q Consensus 371 q~q~~~~~~~~~~e~~~~~a~ 391 (444)
.+...|.++|.+|++.+.|-.
T Consensus 746 ~Lr~~v~~~L~~~~~V~~f~~ 766 (782)
T PRK00409 746 KLRKGVQEFLKKHPSVKSFRD 766 (782)
T ss_pred HHHHHHHHHHcCCCceeeeee
Confidence 678889999999998887743
No 373
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=83.52 E-value=25 Score=29.40 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 126 DNLKKESEKQQKEKEALEARAIEAEKK 152 (444)
Q Consensus 126 e~LkkelE~~~~e~~~LEae~~elEkk 152 (444)
+.++.++..+..+...|..++...+.+
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar 61 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEAR 61 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHH
Confidence 333333333333333333333333333
No 374
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=83.52 E-value=33 Score=30.82 Aligned_cols=43 Identities=26% Similarity=0.424 Sum_probs=27.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 013359 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQD 84 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e 84 (444)
..+.||++.+..|+.+++.+....+-+..+..++.+-+..+.+
T Consensus 12 ~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e 54 (136)
T PF11570_consen 12 AARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE 54 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666666666666666
No 375
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=83.45 E-value=6.9 Score=34.13 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKK 152 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkk 152 (444)
...+-+..++..+..+.+.++.++.++..+..+...+...
T Consensus 83 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~ 122 (126)
T TIGR00293 83 DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQE 122 (126)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777766666666666666555555443
No 376
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=83.37 E-value=67 Score=34.16 Aligned_cols=20 Identities=5% Similarity=0.202 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013359 173 KIRKTERALKVAEEEMMRAK 192 (444)
Q Consensus 173 qI~elE~~Lq~~Eeel~kak 192 (444)
+..++.+.++..+..|.+++
T Consensus 299 RaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 299 RARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 34444444555555455544
No 377
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=83.37 E-value=21 Score=30.83 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
.+...+++...-|..-+-+-... -..+...+..++..|..+++++++|.
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k-------~~~L~e~Lk~ke~~LRk~eqE~dSL~ 53 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAK-------NAELKEQLKEKEQALRKLEQENDSLT 53 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444333333333 33455555555566666666666664
No 378
>PF15456 Uds1: Up-regulated During Septation
Probab=83.30 E-value=27 Score=31.12 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013359 169 EQKSKIRKTERALKVAEE 186 (444)
Q Consensus 169 eqekqI~elE~~Lq~~Ee 186 (444)
....+++++..++..++.
T Consensus 85 ~~~rk~ee~~~eL~~le~ 102 (124)
T PF15456_consen 85 ESDRKCEELAQELWKLEN 102 (124)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 333333333333333333
No 379
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=83.28 E-value=48 Score=32.51 Aligned_cols=52 Identities=13% Similarity=0.191 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kv 160 (444)
.+..-.++++.+|+.|..-+=+.++.++++.+..+.+...+...+++..+..
T Consensus 36 ~q~~l~nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf 87 (230)
T PF03904_consen 36 TQMSLENEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDF 87 (230)
T ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445566666666666666666666555555555555555444444433
No 380
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.20 E-value=41 Score=34.42 Aligned_cols=9 Identities=44% Similarity=0.530 Sum_probs=4.8
Q ss_pred hhhccCCCh
Q 013359 204 EVHSAWLPP 212 (444)
Q Consensus 204 ~~~g~wl~P 212 (444)
+.||-=|.|
T Consensus 171 ~khGlVlv~ 179 (302)
T PF09738_consen 171 EKHGLVLVP 179 (302)
T ss_pred HHCCeeeCC
Confidence 445655555
No 381
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=83.15 E-value=49 Score=32.43 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 013359 117 RADELEKQIDNLKK 130 (444)
Q Consensus 117 ~i~eLe~qIe~Lkk 130 (444)
....+..++..|..
T Consensus 122 ~~~~l~~~l~~l~~ 135 (247)
T PF06705_consen 122 LNQELVRELNELQE 135 (247)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444433
No 382
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=83.14 E-value=47 Score=32.21 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhH
Q 013359 52 SKIRSLESHIDEKTQELKGKD 72 (444)
Q Consensus 52 ~ki~~Lesqi~ele~eI~~k~ 72 (444)
.-++.|+..+....+.+++.+
T Consensus 9 ~~~d~lq~~i~~as~~lNd~T 29 (207)
T PF05546_consen 9 FYMDSLQETIFTASQALNDVT 29 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 334455555555555555444
No 383
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=83.11 E-value=37 Score=34.32 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013359 118 ADELEKQIDNLKKESEKQQK 137 (444)
Q Consensus 118 i~eLe~qIe~LkkelE~~~~ 137 (444)
+.+++++|..|++-+|.++.
T Consensus 119 LKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555443
No 384
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.07 E-value=89 Score=35.39 Aligned_cols=13 Identities=31% Similarity=0.555 Sum_probs=8.3
Q ss_pred HHhHHHhhhcccc
Q 013359 270 VKEQWVVFTTNVE 282 (444)
Q Consensus 270 ~~~~w~~~~~~~~ 282 (444)
+.+=||.+.++.+
T Consensus 256 ~~~LWn~l~ts~E 268 (660)
T KOG4302|consen 256 LLELWNLLDTSDE 268 (660)
T ss_pred HHHHHHhccCCHH
Confidence 5566887666653
No 385
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=83.03 E-value=6.7 Score=36.12 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHhhhhhhH
Q 013359 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEK---AIQDKSERIVSLQKELS----SLQKKETLNA 107 (444)
Q Consensus 46 eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~---~I~e~e~~I~eLq~kI~----sLqkK~s~~~ 107 (444)
.+...+.++..++.++..++.+|.+++.+|+.+.. .++++..+|.+|+.+.. ..+.++...+
T Consensus 14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 386
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=83.02 E-value=19 Score=31.59 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqk 101 (444)
...+...++.+|+--.. ..++..|.-|+.-|..++.
T Consensus 22 C~~K~~~Ie~qI~~Ak~----------------~gN~~rv~GLe~AL~~v~~ 57 (115)
T PF06476_consen 22 CEAKEQAIEKQIEYAKA----------------HGNQHRVAGLEKALEEVKA 57 (115)
T ss_pred HHHHHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHHHh
Confidence 56666666666654322 2334666666666666543
No 387
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=83.01 E-value=56 Score=36.17 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=9.8
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 013359 42 PLKIELDQLKSKIRSLESHID 62 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Lesqi~ 62 (444)
.+...+..+..++.+++.++.
T Consensus 11 dl~~~I~~L~~~i~~~k~eV~ 31 (593)
T PF06248_consen 11 DLRKSISRLSRRIEELKEEVH 31 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 388
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=82.76 E-value=16 Score=29.65 Aligned_cols=17 Identities=29% Similarity=0.644 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013359 120 ELEKQIDNLKKESEKQQ 136 (444)
Q Consensus 120 eLe~qIe~LkkelE~~~ 136 (444)
+|..++..|++++...+
T Consensus 47 eLKve~~~L~~el~~~~ 63 (75)
T PF07989_consen 47 ELKVEVESLKRELQEKK 63 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444443333333
No 389
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=82.75 E-value=32 Score=36.54 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 52 SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQK 94 (444)
Q Consensus 52 ~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~ 94 (444)
..|...+.-.+++..++....+||.+.+..|+..+..|.+..+
T Consensus 278 ~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~ 320 (421)
T KOG2685|consen 278 KRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEG 320 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccc
Confidence 3334444444444444444444444444444444444443333
No 390
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=82.46 E-value=17 Score=29.50 Aligned_cols=28 Identities=43% Similarity=0.372 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 120 ELEKQIDNLKKESEKQQKEKEALEARAI 147 (444)
Q Consensus 120 eLe~qIe~LkkelE~~~~e~~~LEae~~ 147 (444)
+.+.+|++|+++.-.++-.+.-++.++.
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3445555555555555555555555444
No 391
>PF15294 Leu_zip: Leucine zipper
Probab=82.35 E-value=60 Score=32.88 Aligned_cols=73 Identities=32% Similarity=0.426 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 013359 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQK---------SKIRKTERALKVAEEEMMRA 191 (444)
Q Consensus 121 Le~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqe---------kqI~elE~~Lq~~Eeel~ka 191 (444)
++.+|++|+.+.+.++..+..++.+....-.+...++..+.+++.....++ ..+..++..+..++.++.+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 556666666666666666666666655555555556666666555333222 23455555555555554444
Q ss_pred HH
Q 013359 192 KF 193 (444)
Q Consensus 192 k~ 193 (444)
-.
T Consensus 210 ~~ 211 (278)
T PF15294_consen 210 LQ 211 (278)
T ss_pred HH
Confidence 33
No 392
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.33 E-value=3.3 Score=47.90 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
+..+|..+.....++..+..+......+....+...+...........+...-+.++.
T Consensus 433 ~~~~l~~~~s~~~~l~~~~~~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~ 490 (847)
T KOG0998|consen 433 LANELSNLASTSQQLPAQKDTVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLD 490 (847)
T ss_pred chhhhhhcchhhhccccccchhhhhhhhhhhhhhHHHhhhhhhhhhhhcccccccccc
Confidence 4566666666666666666665555555555555555444444444444444444443
No 393
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.29 E-value=95 Score=35.18 Aligned_cols=149 Identities=18% Similarity=0.168 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH--HHHHHHHHHHH
Q 013359 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAA--EQVDKAHARAD 119 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~--~~i~~ae~~i~ 119 (444)
.+...+.++..-+.++.+.+++++.+..-.......+...+...++.+..-..++...+.++..... .+....+.++.
T Consensus 148 e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a 227 (716)
T KOG4593|consen 148 EKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNA 227 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLE---KLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (444)
Q Consensus 120 eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kve---eLe~~~eeqekqI~elE~~Lq~~Eeel~ka 191 (444)
+.+.++. ...+++.++......-.++.+++....+...++. +-...+.-++..+..++..+..++.-..+.
T Consensus 228 ~~~~ql~-~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~ 301 (716)
T KOG4593|consen 228 ELEQQLS-LSEELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTL 301 (716)
T ss_pred hHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
No 394
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=82.23 E-value=20 Score=38.80 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176 (444)
Q Consensus 141 ~LEae~~elEkkleEle~kveeLe~~~eeqekqI~e 176 (444)
.++++..++..+.+.+...+..++..+.+++.+++.
T Consensus 106 av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 106 AVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444445555555555555555555555555543
No 395
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=82.19 E-value=85 Score=34.56 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=18.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 013359 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI 82 (444)
Q Consensus 41 ~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I 82 (444)
..+..+++.|+-++......+..+ ++++-++++..++..|
T Consensus 251 ~~id~~~~~L~~~l~~~~~~l~~L--eld~aeeel~~I~e~i 290 (570)
T COG4477 251 VNIDSRLERLKEQLVENSELLTQL--ELDEAEEELGLIQEKI 290 (570)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHh--hhhhHHHHHHHHHHHH
Confidence 445556666665555554444433 2333334444333333
No 396
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.15 E-value=77 Score=34.03 Aligned_cols=25 Identities=8% Similarity=0.109 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 357 AYGKFLKSATTYHHQVQASVQEMLK 381 (444)
Q Consensus 357 ~~~~~~~~a~~~h~q~q~~~~~~~~ 381 (444)
....+.+++....+.+++...+.+.
T Consensus 396 ~i~k~~e~se~~l~~~~n~~~~~i~ 420 (438)
T COG4487 396 EIEKLIESTENMLGSLLNILGKKIG 420 (438)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555554
No 397
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.13 E-value=25 Score=28.35 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 77 QKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 77 ~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
+++..|.+.-..|+=|+-+|+.|-
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELK 31 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555443
No 398
>PRK04325 hypothetical protein; Provisional
Probab=81.97 E-value=12 Score=30.34 Aligned_cols=45 Identities=16% Similarity=0.309 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 148 EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (444)
Q Consensus 148 elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak 192 (444)
.++.++.+++.++.-++..++++...+-++...|..++.++..+.
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~ 50 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLY 50 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555544444444444443
No 399
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=81.88 E-value=39 Score=30.44 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 149 AEKKISDLSAKLEKLQKINDEQKSKIR 175 (444)
Q Consensus 149 lEkkleEle~kveeLe~~~eeqekqI~ 175 (444)
.++.+.+|---+.++..++..++.++.
T Consensus 82 ~q~EldDLL~ll~Dle~K~~kyk~rLk 108 (136)
T PF04871_consen 82 AQSELDDLLVLLGDLEEKRKKYKERLK 108 (136)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333444444444444444444443333
No 400
>PRK00295 hypothetical protein; Provisional
Probab=81.86 E-value=12 Score=29.80 Aligned_cols=44 Identities=9% Similarity=0.150 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 150 EKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (444)
Q Consensus 150 EkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~ 193 (444)
+.++.+++.++.-++..++++...+-++.+.|..++.++..+..
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555554444444444444444433
No 401
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=81.84 E-value=28 Score=40.05 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhcCCCchhcc
Q 013359 371 QVQASVQEMLKKHELTSPLAT 391 (444)
Q Consensus 371 q~q~~~~~~~~~~e~~~~~a~ 391 (444)
.+...|.++|.+|++.+.|-.
T Consensus 735 ~Lr~~v~~~L~~~~~V~~f~~ 755 (771)
T TIGR01069 735 KLRKGVQELLKNHPKVKSFRD 755 (771)
T ss_pred HHHHHHHHHhcCCcceeeecc
Confidence 688899999999999988844
No 402
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=81.82 E-value=1e+02 Score=35.10 Aligned_cols=171 Identities=19% Similarity=0.255 Sum_probs=0.0
Q ss_pred chHHHHHHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 013359 42 PLKIELDQL-KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (444)
Q Consensus 42 ~l~~eL~~l-~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~e 120 (444)
+.+.+|+++ +..-.+|.+=-.+-...+.++......+++.+...+......-+++...+.+...+ .+++.+..+.+.-
T Consensus 137 ~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L-~~qLsk~~~~le~ 215 (739)
T PF07111_consen 137 GSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLL-REQLSKTQEELEA 215 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHH
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013359 121 LEKQIDNLKKESEKQ---QKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATS 197 (444)
Q Consensus 121 Le~qIe~LkkelE~~---~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~ 197 (444)
-...++.|.+-+-.+ +..-...+.+..++-..++-++...+.|....+-++.+++.+..-+.-.|+++-+.......
T Consensus 216 q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~ 295 (739)
T PF07111_consen 216 QVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDP 295 (739)
T ss_pred HHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q ss_pred hhHHhhhhhccCCChh
Q 013359 198 RSKELTEVHSAWLPPW 213 (444)
Q Consensus 198 ~a~ei~~~~g~wl~Pw 213 (444)
+..+-+...+..|--|
T Consensus 296 Le~e~~~K~q~LL~~W 311 (739)
T PF07111_consen 296 LEPEFSRKCQQLLSRW 311 (739)
T ss_pred CCchhHHHHHHHHHHH
No 403
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=81.76 E-value=26 Score=34.75 Aligned_cols=43 Identities=12% Similarity=0.298 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 156 LSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (444)
Q Consensus 156 le~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~ 198 (444)
+.+.-+.....+.+++.++..+.+.+..++.++..++..-..+
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555566666666665555544
No 404
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=81.73 E-value=45 Score=31.00 Aligned_cols=91 Identities=10% Similarity=0.192 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~Lk 129 (444)
.......|+..+.+....+...+.++.+....++.....+......|+.+...++...-..+.....-.+.+..++..++
T Consensus 13 r~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e 92 (158)
T PF09486_consen 13 RRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAE 92 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666777777777777778888888888888888888766666544555555555555555555555
Q ss_pred HHHHHHHHHHH
Q 013359 130 KESEKQQKEKE 140 (444)
Q Consensus 130 kelE~~~~e~~ 140 (444)
.++......+.
T Consensus 93 ~~~a~l~~~l~ 103 (158)
T PF09486_consen 93 AELAALRQALR 103 (158)
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 405
>PRK11020 hypothetical protein; Provisional
Probab=81.54 E-value=13 Score=32.52 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQ 66 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~ 66 (444)
++.||..|+.+++.++.+.....+
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~ 26 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASL 26 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555554433
No 406
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=81.27 E-value=78 Score=35.08 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 58 ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (444)
Q Consensus 58 esqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI 96 (444)
+...+.++..+..+.+++.+++.+|+..++....|+.++
T Consensus 413 ~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~ 451 (607)
T KOG0240|consen 413 EEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQL 451 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556666666666666666666665554
No 407
>PRK14011 prefoldin subunit alpha; Provisional
Probab=81.25 E-value=43 Score=30.55 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013359 78 KEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 78 ~e~~I~e~e~~I~eLq~kI~sL 99 (444)
+-..++....+++.|+..|+.|
T Consensus 8 ~~~~l~~~~~qie~L~~si~~L 29 (144)
T PRK14011 8 QFMALEVYNQQVQKLQEELSSI 29 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444333
No 408
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.19 E-value=12 Score=38.57 Aligned_cols=76 Identities=17% Similarity=0.206 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 103 ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (444)
Q Consensus 103 ~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE 178 (444)
++.+.+.-....+++++.+..+++.|+..-|.++....+++...+.||.+...++..++-|....++...+...++
T Consensus 212 isa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~ 287 (365)
T KOG2391|consen 212 ISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLE 287 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCc
No 409
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=81.10 E-value=13 Score=34.95 Aligned_cols=23 Identities=57% Similarity=0.759 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013359 120 ELEKQIDNLKKESEKQQKEKEAL 142 (444)
Q Consensus 120 eLe~qIe~LkkelE~~~~e~~~L 142 (444)
.++++++++++++++.+.+.+.+
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~L 180 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEAL 180 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433333333
No 410
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=80.90 E-value=12 Score=29.23 Aligned_cols=56 Identities=29% Similarity=0.475 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 79 EKAIQDKSERIVSLQKELSSLQKKETLN------AAEQVDKAHARADELEKQIDNLKKESEK 134 (444)
Q Consensus 79 e~~I~e~e~~I~eLq~kI~sLqkK~s~~------~~~~i~~ae~~i~eLe~qIe~LkkelE~ 134 (444)
+..+..+++++..++.+|+.++++++.- -.+-+..-..++.++..++..+...++.
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555554431 1133344445555555555555555443
No 411
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=80.89 E-value=54 Score=37.00 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQE 67 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~e 67 (444)
..++..++.++.+++.+.+...++
T Consensus 345 ~q~~~~~~~~l~~~~~~~~~~~~e 368 (656)
T PRK06975 345 NRKVDRLDQELVQRQQANDAQTAE 368 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666655554444443
No 412
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=80.85 E-value=68 Score=34.32 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=19.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013359 390 ATKELEWFAASALLVLPVIILFRIGSAIFC 419 (444)
Q Consensus 390 a~~~~~w~~a~a~~~~p~~~~~~~~~~~f~ 419 (444)
-|.+-.|.-|..++.--+=.+--.+|+.|.
T Consensus 416 fN~De~WTrALkFmLTnlK~~~A~vss~~~ 445 (447)
T KOG2751|consen 416 FNSDENWTRALKFMLTNLKWLLAWVSSLFS 445 (447)
T ss_pred ecchHHHHHHHHHHHhccHHHHHHHhhhhc
Confidence 355566988887666655555555666664
No 413
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=80.83 E-value=60 Score=37.10 Aligned_cols=10 Identities=30% Similarity=0.461 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 013359 172 SKIRKTERAL 181 (444)
Q Consensus 172 kqI~elE~~L 181 (444)
.+|+.++++|
T Consensus 695 ~kieal~~qi 704 (762)
T PLN03229 695 EKIEALEQQI 704 (762)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 414
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=80.82 E-value=94 Score=34.18 Aligned_cols=186 Identities=22% Similarity=0.308 Sum_probs=0.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHhhhhhhHHHHHHHHHH
Q 013359 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSER-IVSLQKELS-SLQKKETLNAAEQVDKAHA 116 (444)
Q Consensus 39 ~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~-I~eLq~kI~-sLqkK~s~~~~~~i~~ae~ 116 (444)
..+....-+..+..++.+|..++.+++....+ .++..|.+...+ +..+..++. .+..+.....+.-....+.
T Consensus 245 ~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~------~l~~~L~~q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~ 318 (582)
T PF09731_consen 245 SESDLNSLIAHAKERIDALQKELAELKEEEEE------ELERALEEQREELLSKLREELEQELEEKRAELEEELREEFER 318 (582)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 117 RADELEKQ-IDNLKKESEKQQKEKE-ALEARAIEAEKKISDLSAK--LEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (444)
Q Consensus 117 ~i~eLe~q-Ie~LkkelE~~~~e~~-~LEae~~elEkkleEle~k--veeLe~~~eeqekqI~elE~~Lq~~Eeel~kak 192 (444)
....+++. -++|+.+++.+.+... .+...+.....++...-.+ -+.+..+......+++++..++..++..+....
T Consensus 319 ~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~ 398 (582)
T PF09731_consen 319 EREELEEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARS 398 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhHHhhhhhccCCChhHHHHHHhhhHhhhhhhhccC-----CcchHHHHHHHH
Q 013359 193 FEATSRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHG-----KPAMDVAIQKAL 245 (444)
Q Consensus 193 ~E~~~~a~ei~~~~g~wl~Pw~~~~~~~~~~~~~~~w~~hg-----~p~~~~~~~k~~ 245 (444)
........--.= |+++..++..- .+| .|+.+++.....
T Consensus 399 ~~~~~~~~~~~l--------~~a~~~l~~~l-------~~~~~~~~~p~~~el~~l~~ 441 (582)
T PF09731_consen 399 EAEDENRRAQQL--------WLAVDALKSAL-------DSGNAGSPRPFEDELRALKE 441 (582)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHH-------HcCCCcCCCCHHHHHHHHHH
No 415
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=80.81 E-value=85 Score=33.63 Aligned_cols=64 Identities=16% Similarity=0.249 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 109 EQVDKAHARADELEKQIDNLKKESEKQQ--KEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKS 172 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe~LkkelE~~~--~e~~~LEae~~elEkkleEle~kveeLe~~~eeqek 172 (444)
........-+..+..++...+.---... ....-.+.-...|......+-.++++|++.++.+.+
T Consensus 173 ~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRk 238 (426)
T smart00806 173 SFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRK 238 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555566666666666655311111 112222233333444444444445555555544443
No 416
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=80.71 E-value=44 Score=35.45 Aligned_cols=15 Identities=13% Similarity=0.397 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 013359 47 LDQLKSKIRSLESHI 61 (444)
Q Consensus 47 L~~l~~ki~~Lesqi 61 (444)
+.++..+++.+...+
T Consensus 262 ~~e~~q~Ld~l~~rL 276 (438)
T PRK00286 262 RAELLQRLQQLQQRL 276 (438)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555554444
No 417
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=80.55 E-value=55 Score=31.33 Aligned_cols=30 Identities=10% Similarity=0.266 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 153 ISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (444)
Q Consensus 153 leEle~kveeLe~~~eeqekqI~elE~~Lq 182 (444)
..........|+.+....+.+++.+..++.
T Consensus 149 Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~ 178 (192)
T PF11180_consen 149 QQQARQEAQALEAERRAAQAQLRQLQRQVR 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444433333
No 418
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=80.23 E-value=58 Score=31.34 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 013359 45 IELDQLKSKIRSLESHIDEKTQEL 68 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI 68 (444)
.-+.....+|..|+.+..++=.+|
T Consensus 32 k~~~~~~k~L~~lE~~~q~lY~~i 55 (204)
T PF10368_consen 32 KPFKEQQKKLNELEKKEQELYEQI 55 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666655555
No 419
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=80.09 E-value=0.97 Score=39.51 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 013359 50 LKSKIRSLESHIDEK 64 (444)
Q Consensus 50 l~~ki~~Lesqi~el 64 (444)
+...+..|..++.++
T Consensus 30 l~~~~~~l~~e~~~L 44 (131)
T PF05103_consen 30 LAEELERLQRENAEL 44 (131)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 420
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=80.02 E-value=96 Score=33.78 Aligned_cols=132 Identities=9% Similarity=0.137 Sum_probs=59.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--
Q 013359 64 KTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKES-EKQQKEKE-- 140 (444)
Q Consensus 64 le~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~Lkkel-E~~~~e~~-- 140 (444)
...++....+++.............+.+++..++..+... .++....++--..|..+-+.|-.++ +.......
T Consensus 58 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~----~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~ 133 (475)
T PRK10361 58 WRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHA----DDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQ 133 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666666666677777777666554322 2233333333344555555553322 22222221
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHh
Q 013359 141 ---ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (444)
Q Consensus 141 ---~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ei 202 (444)
.++.-+.=+..++.....++++........ -..+..+|..+.+.-.+...++..+.+-+
T Consensus 134 ~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~---~~~L~~qi~~L~~~n~~i~~ea~nLt~AL 195 (475)
T PRK10361 134 NRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQE---RHTLAHEIRNLQQLNAQMAQEAINLTRAL 195 (475)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333334444444444444443332222 23333444444444444444555444433
No 421
>PF15456 Uds1: Up-regulated During Septation
Probab=79.89 E-value=41 Score=29.93 Aligned_cols=18 Identities=39% Similarity=0.746 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013359 45 IELDQLKSKIRSLESHID 62 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ 62 (444)
+|.++++.++..|.+.++
T Consensus 22 eEVe~LKkEl~~L~~R~~ 39 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLE 39 (124)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444433333
No 422
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=79.65 E-value=78 Score=32.52 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 013359 48 DQLKSKIRSLESHIDEKTQELKG 70 (444)
Q Consensus 48 ~~l~~ki~~Lesqi~ele~eI~~ 70 (444)
+++...+..|+.+-..+..++..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ 45 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELET 45 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 44555555555544444444333
No 423
>PRK00736 hypothetical protein; Provisional
Probab=79.48 E-value=14 Score=29.44 Aligned_cols=46 Identities=9% Similarity=0.209 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 150 EKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEA 195 (444)
Q Consensus 150 EkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~ 195 (444)
+.++.+++.++.-++..++++...+-++.+.|..++.++..+..+.
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555444444443333
No 424
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=79.32 E-value=58 Score=30.87 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 119 DELEKQIDNLKKESEKQQKEKEALEARAIEA 149 (444)
Q Consensus 119 ~eLe~qIe~LkkelE~~~~e~~~LEae~~el 149 (444)
.+++.+|..|+.+++.+......+..+...+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333333333333
No 425
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=79.17 E-value=48 Score=29.84 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013359 156 LSAKLEKLQKINDEQKSKIRK 176 (444)
Q Consensus 156 le~kveeLe~~~eeqekqI~e 176 (444)
..+.+++|=-.+..+..++..
T Consensus 82 ~q~EldDLL~ll~Dle~K~~k 102 (136)
T PF04871_consen 82 AQSELDDLLVLLGDLEEKRKK 102 (136)
T ss_pred hhhhHHHHHHHHHhHHHHHHH
Confidence 333333333333333333333
No 426
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=79.05 E-value=59 Score=30.74 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKA 81 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~ 81 (444)
..++..+.-+|..|+.++.++.+.+...+.||+.+.+.
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~ 115 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSA 115 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666777777777777777766666666666555543
No 427
>PRK02793 phi X174 lysis protein; Provisional
Probab=79.05 E-value=17 Score=29.23 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 149 AEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEA 195 (444)
Q Consensus 149 lEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~ 195 (444)
++.++.+++.++.-++..++++...+-++...|..++.++..+..+.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555444444443333
No 428
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=79.02 E-value=47 Score=31.67 Aligned_cols=90 Identities=17% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEK 151 (444)
Q Consensus 72 ~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEk 151 (444)
++.|.......++++.+++..+.++.++...+... .......+++-+++......|+++++.++.++..++.--..+-.
T Consensus 73 s~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~-K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~ 151 (203)
T KOG3433|consen 73 SEAICDRKSVLQELESQLATGSQKKATLGESIENR-KAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFE 151 (203)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Q ss_pred HHHHHHHHHHH
Q 013359 152 KISDLSAKLEK 162 (444)
Q Consensus 152 kleEle~kvee 162 (444)
....+++...+
T Consensus 152 k~~~~~K~~~e 162 (203)
T KOG3433|consen 152 KKVHLEKTMAE 162 (203)
T ss_pred HHHHHHHHHHH
No 429
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=78.91 E-value=39 Score=37.42 Aligned_cols=12 Identities=8% Similarity=0.448 Sum_probs=7.2
Q ss_pred hhccCCcchHHH
Q 013359 229 WNAHGKPAMDVA 240 (444)
Q Consensus 229 w~~hg~p~~~~~ 240 (444)
|-.-+.|.+...
T Consensus 300 ~y~~~~p~i~~~ 311 (555)
T TIGR03545 300 YYDQAEPLLNKS 311 (555)
T ss_pred HHHHHhHhhccc
Confidence 555566666555
No 430
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=78.67 E-value=11 Score=30.79 Aligned_cols=53 Identities=11% Similarity=0.352 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 013359 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQ---KEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 47 L~~l~~ki~~Lesqi~ele~eI~~k~~eIk~---~e~~I~e~e~~I~eLq~kI~sL 99 (444)
|-.+++.|..+..+.+.+++.+++...-+.. ++..+.-.+..+.+++.++.++
T Consensus 6 Ll~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I 61 (75)
T PF05531_consen 6 LLVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEI 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555443332221 3334444444444444444333
No 431
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=78.47 E-value=10 Score=40.94 Aligned_cols=16 Identities=19% Similarity=0.480 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 013359 114 AHARADELEKQIDNLK 129 (444)
Q Consensus 114 ae~~i~eLe~qIe~Lk 129 (444)
.+.+..+|+++++.++
T Consensus 74 qQ~kasELEKqLaaLr 89 (475)
T PRK13729 74 MQVTAAQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 432
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=78.31 E-value=55 Score=35.02 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (444)
Q Consensus 128 LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~E 185 (444)
++++-.++..++.+++.++.++..+...+-+......-..-+.+..++.++.+++..+
T Consensus 202 le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~ 259 (447)
T KOG2751|consen 202 LEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQ 259 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Confidence 3333333333333444444444333333333333333333333333444443333333
No 433
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=77.89 E-value=45 Score=28.80 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERA 180 (444)
Q Consensus 116 ~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~ 180 (444)
.+...|+.|..-|++-+-+-+..-..|...+..-+..+..++++++.|.=.+..+.+++..+..+
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~E 69 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEE 69 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888887776666555555555555554444444444444444444444444433333
No 434
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=77.88 E-value=12 Score=37.29 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 013359 51 KSKIRSLESHIDE 63 (444)
Q Consensus 51 ~~ki~~Lesqi~e 63 (444)
...+..|+..++.
T Consensus 39 ~~r~~~le~~~~~ 51 (263)
T PRK10803 39 EDRVTQLERISNA 51 (263)
T ss_pred HHHHHHHHHHHHh
Confidence 3344444433333
No 435
>COG5283 Phage-related tail protein [Function unknown]
Probab=77.69 E-value=1.6e+02 Score=35.50 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKIS 154 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkle 154 (444)
.+.++..+.+.-.+..++.......+.-..|..+..+-.++.
T Consensus 75 ~~kqe~~evn~at~a~~kay~e~~~q~tqae~~~~sas~q~~ 116 (1213)
T COG5283 75 DLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFG 116 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 444444444444444444444444444444444443433333
No 436
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=77.58 E-value=1.5e+02 Score=34.75 Aligned_cols=20 Identities=40% Similarity=0.441 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013359 116 ARADELEKQIDNLKKESEKQ 135 (444)
Q Consensus 116 ~~i~eLe~qIe~LkkelE~~ 135 (444)
.++..++.++..|++-+...
T Consensus 548 qklk~le~q~s~lkk~l~~~ 567 (913)
T KOG0244|consen 548 QKLKSLETQISLLKKKLSSQ 567 (913)
T ss_pred HHHHHHHHHHHHHHHhhHHH
Confidence 34455555555554444433
No 437
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=77.54 E-value=48 Score=28.91 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013359 81 AIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 81 ~I~e~e~~I~eLq~kI~sL 99 (444)
.+++...+|..++.+++.+
T Consensus 7 ~~~~l~~~i~~l~~~~~~l 25 (129)
T cd00584 7 QLQVLQQEIEELQQELARL 25 (129)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 438
>PHA03332 membrane glycoprotein; Provisional
Probab=77.51 E-value=1e+02 Score=36.68 Aligned_cols=54 Identities=7% Similarity=0.108 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 78 KEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQ 135 (444)
Q Consensus 78 ~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~ 135 (444)
+.+.|..+++.|..+++.+..+-+.+.. -...+.++|.+-|.+|+.|+++++..
T Consensus 896 mksaIg~tNaAV~~lsDai~klGnti~k----isatl~~nI~avNgRIs~Led~VN~r 949 (1328)
T PHA03332 896 MASKIGGLNARVDKTSDVITKLGDTIAK----ISATLDNNIRAVNGRVSDLEDQVNLR 949 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHhhHHHhcccHHHHHHHHHHH
Confidence 4444444444444444444433333322 12356667777777777776665543
No 439
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=77.42 E-value=1.2e+02 Score=35.01 Aligned_cols=15 Identities=13% Similarity=0.366 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 013359 49 QLKSKIRSLESHIDE 63 (444)
Q Consensus 49 ~l~~ki~~Lesqi~e 63 (444)
++++++.+.+++-..
T Consensus 988 kLr~rL~q~eaeR~~ 1002 (1480)
T COG3096 988 KLRQRLEQAEAERTR 1002 (1480)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356666666554443
No 440
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=77.42 E-value=70 Score=35.51 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 86 SERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK 165 (444)
Q Consensus 86 e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~ 165 (444)
-.++.+|..+-..|+.++... ..-..+++++|.++++++.+++.+.+....+-...+..---.-.+..-...+++..--
T Consensus 328 IakVDeL~~E~~vLrgElea~-kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLM 406 (832)
T KOG2077|consen 328 IAKVDELTCEKDVLRGELEAV-KQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLM 406 (832)
T ss_pred HHHHHhhccHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHH
Confidence 334444555545554444333 2233467777777777777777666655433221111110011111222223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013359 166 INDEQKSKIRKTERALKVAEEEMMRAKFEATS 197 (444)
Q Consensus 166 ~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~ 197 (444)
+...++.++-+|++.+.=+|+ .|+.++-..
T Consensus 407 eRNqYKErLMELqEavrWTEM--iRAsre~p~ 436 (832)
T KOG2077|consen 407 ERNQYKERLMELQEAVRWTEM--IRASRENPA 436 (832)
T ss_pred HHhHHHHHHHHHHHHHhHHHH--HHHhhcCch
Confidence 445677777778777777664 455444443
No 441
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=77.26 E-value=11 Score=31.09 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDE---KTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~e---le~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI 96 (444)
+....+.++.+|+...+.+.+ ++..+++...+|.+++..|+.+..-|+.+.+.+
T Consensus 26 ~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 26 LDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677788888888887777 667777777777777777777777777666543
No 442
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=77.26 E-value=1.6 Score=38.20 Aligned_cols=35 Identities=9% Similarity=0.180 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 013359 51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDK 85 (444)
Q Consensus 51 ~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~ 85 (444)
..=|+.+...+..+..++.++..++..++..+...
T Consensus 24 D~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~ 58 (131)
T PF05103_consen 24 DDFLDELAEELERLQRENAELKEEIEELQAQLEEL 58 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 33444444444444444444333333333333333
No 443
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=77.03 E-value=39 Score=37.46 Aligned_cols=41 Identities=15% Similarity=0.311 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 59 SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 59 sqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
...+++++.+++..+..++....+. ....+.+++++++.+.
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~ 204 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIK 204 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHH
Confidence 3444444444444444444444443 2344444445444443
No 444
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=76.98 E-value=30 Score=31.93 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 109 EQVDKAHARADELEKQIDNLK-------KESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe~Lk-------kelE~~~~e~~~LEae~~elEkkleEle~kv 160 (444)
+.++...++....++++-+.. +.+....++++.|+.+...+...++.+.+++
T Consensus 44 e~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~ 102 (157)
T COG3352 44 EVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDF 102 (157)
T ss_pred HHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555555443 3333333344444444444444444444433
No 445
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=76.97 E-value=56 Score=29.58 Aligned_cols=6 Identities=33% Similarity=0.839 Sum_probs=2.5
Q ss_pred cCCcch
Q 013359 232 HGKPAM 237 (444)
Q Consensus 232 hg~p~~ 237 (444)
|-.|++
T Consensus 110 ~~RPA~ 115 (135)
T TIGR03495 110 RQRPAL 115 (135)
T ss_pred hcCCCC
Confidence 334444
No 446
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=76.88 E-value=12 Score=40.32 Aligned_cols=9 Identities=11% Similarity=-0.079 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 013359 176 KTERALKVA 184 (444)
Q Consensus 176 elE~~Lq~~ 184 (444)
+++.+++.+
T Consensus 108 eLEaE~~~L 116 (475)
T PRK13729 108 KLGQDNAAL 116 (475)
T ss_pred HHHHHHHHH
Confidence 333333333
No 447
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.65 E-value=1.3e+02 Score=33.36 Aligned_cols=39 Identities=28% Similarity=0.234 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKA 81 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~ 81 (444)
.+.++.-++..+...+..|..-.+.|+.+++-|+.+...
T Consensus 241 ~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEm 279 (654)
T KOG4809|consen 241 TKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEM 279 (654)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 344444455555555555555555555555555554443
No 448
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=76.61 E-value=74 Score=30.61 Aligned_cols=15 Identities=13% Similarity=0.439 Sum_probs=5.4
Q ss_pred HHHHHHHHhhhhhHH
Q 013359 59 SHIDEKTQELKGKDE 73 (444)
Q Consensus 59 sqi~ele~eI~~k~~ 73 (444)
++++..++.|..+..
T Consensus 12 d~l~~Nnr~L~~L~~ 26 (196)
T PF15272_consen 12 DQLDQNNRALSDLNQ 26 (196)
T ss_pred HHHHHhHHHHHHHHH
Confidence 333333333333333
No 449
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=76.51 E-value=73 Score=30.51 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (444)
Q Consensus 119 ~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~ka 191 (444)
..|+.|..-+++.|...+.....|.+.+.-....-...........++...++.+-.....+|..++..+..+
T Consensus 108 ~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 108 AQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333333333333333333333333333333333333333333333333333333333
No 450
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=76.07 E-value=90 Score=31.31 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE 178 (444)
+..+....+.+.|.+|++..+.++.-+..-.--+++++.+++..-.+..-|+.++.+.+.-+....
T Consensus 102 qt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvq 167 (333)
T KOG1853|consen 102 QTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQ 167 (333)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344445555666666666655555554444555677777777777777777777777666555443
No 451
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=75.79 E-value=43 Score=27.48 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK 78 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~ 78 (444)
..+++++..+..+.....++...|+....++.++
T Consensus 14 P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~ 47 (92)
T PF14712_consen 14 PDLDRLDQQLQELRQSQEELLQQIDRLNEKLKEL 47 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666655555544444433
No 452
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=75.51 E-value=1.1e+02 Score=32.06 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 013359 52 SKIRSLESHIDEKTQELKG 70 (444)
Q Consensus 52 ~ki~~Lesqi~ele~eI~~ 70 (444)
+++..|+..+..+++-|..
T Consensus 209 a~~a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 209 ARAADLEKRLARLESALGI 227 (388)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 4555555555555554444
No 453
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=75.51 E-value=80 Score=32.33 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 47 L~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
+.+++..+..++.+-...--.-..++.+-..+--+|.-+...|.+++..+..++
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~ 132 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQ 132 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444433333333333333333333333344444444444333
No 454
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=75.47 E-value=15 Score=29.26 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=15.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 64 KTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 64 le~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sL 99 (444)
++..+++.++.+..+|......+..|..+..+|+.+
T Consensus 11 ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 11 IETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444444
No 455
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=75.42 E-value=56 Score=28.66 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhccCCCCCCCccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 013359 12 FFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVS 91 (444)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~e 91 (444)
|++++++.+.++.+...... ...+...++.+|+--...=+. ..|.-
T Consensus 2 l~~~~~~~~~a~~~~~~~~g------------------C~~K~~~Ie~qI~~Ak~~gN~----------------~rv~G 47 (115)
T PF06476_consen 2 LAALLALSSAAAAAAAALTG------------------CEAKEQAIEKQIEYAKAHGNQ----------------HRVAG 47 (115)
T ss_pred hHHHHHHHHHHHhhccccCc------------------HHHHHHHHHHHHHHHHHcCCH----------------HHHHH
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 92 LQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQK 171 (444)
Q Consensus 92 Lq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqe 171 (444)
|+.-|..++..=+.. ....+.+..+...+.++.+.+.++.+....=.. .+|..-+.++.+.+
T Consensus 48 Le~AL~~v~~~Ctd~----------------~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~--~KI~K~~~KL~ea~ 109 (115)
T PF06476_consen 48 LEKALEEVKAHCTDE----------------GLKAERQQKIAEKQQKVAEREAELKEAQAKGDS--DKIAKRQKKLAEAK 109 (115)
T ss_pred HHHHHHHHHhhcCCc----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 013359 172 SKIRK 176 (444)
Q Consensus 172 kqI~e 176 (444)
.++.+
T Consensus 110 ~eL~~ 114 (115)
T PF06476_consen 110 AELKE 114 (115)
T ss_pred HHHhh
No 456
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.42 E-value=1e+02 Score=34.34 Aligned_cols=109 Identities=16% Similarity=0.268 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 013359 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIV-SLQKELSSLQKKETLNAAEQVDKAHARAD 119 (444)
Q Consensus 41 ~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~-eLq~kI~sLqkK~s~~~~~~i~~ae~~i~ 119 (444)
++.+.+++.++.=+.....++-+.+..|.+.+.+.++ .+.+++..|. +..+.++... ..--+++.++
T Consensus 388 d~t~d~id~i~~l~k~~na~V~~~N~ri~nf~k~~~~---sk~~le~~~v~~~~~~VQe~~---------~Y~g~ekk~n 455 (758)
T COG4694 388 DSTKDEIDAIKDLIKKANAQVVNHNERIKNFEKQKKS---SKEQLEKFLVNEFKSDVQEYN---------KYCGLEKKIN 455 (758)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLE 161 (444)
Q Consensus 120 eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kve 161 (444)
.|+.++...+++++.+.++..++|+-+....--++++++-+.
T Consensus 456 ~LE~e~kn~~~ev~kls~ei~~ie~~l~~~~~~vke~nq~l~ 497 (758)
T COG4694 456 NLEKEIKNNQEEVKKLSNEIKEIEKFLVSIKPIVKEINQTLL 497 (758)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
No 457
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.25 E-value=88 Score=30.80 Aligned_cols=103 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 91 SLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQ 170 (444)
Q Consensus 91 eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeq 170 (444)
...++|...-..+.+.-+.........+.+.-.++..-+.+.+.+.+.+.+.++++....+.+.+-+.....+++.+...
T Consensus 19 ~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~ 98 (246)
T KOG4657|consen 19 ICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKAT 98 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013359 171 KSKIRKTERALKVAEEEMMRAKF 193 (444)
Q Consensus 171 ekqI~elE~~Lq~~Eeel~kak~ 193 (444)
+.+++-+...+|.+++++...++
T Consensus 99 q~elEvl~~n~Q~lkeE~dd~ke 121 (246)
T KOG4657|consen 99 QSELEVLRRNLQLLKEEKDDSKE 121 (246)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHH
No 458
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.19 E-value=11 Score=37.81 Aligned_cols=93 Identities=19% Similarity=0.264 Sum_probs=0.0
Q ss_pred CcchhhhHHHHHHHHHHHHhhhhccCCCCCCC-ccCccCCCCchHH---------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 1 MAASKLVIFSLFFALILTAADVSIQGEDVPPL-TASDAVDSSPLKI---------ELDQLKSKIRSLESHIDEKTQELKG 70 (444)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~---------eL~~l~~ki~~Lesqi~ele~eI~~ 70 (444)
|.--+++++.+++++.++.........-.+.. +.....+..+..- .+.+++.+|.+++.+|+++.. +.+
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~Ql~~l~g~i~~L~~-~~~ 80 (262)
T COG1729 2 KSNLRLVLLGLSLLVGLAAPASAPAISGAPLSSAGNGSVEDRVTPLERVQNAHSYRLTQLEQQLRQLQGKIEELRG-IQE 80 (262)
T ss_pred chhHHHHHHHHHHHHhhcccccccccccchhhhcccCCccccccccccccchhhhccHHHHHHHHHHHhhHHHHHh-HHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 71 KDEVVAQKEKAIQDKSERIVSLQK 94 (444)
Q Consensus 71 k~~eIk~~e~~I~e~e~~I~eLq~ 94 (444)
..-+.+++....++....+..+++
T Consensus 81 ~q~q~~~~~~~qe~~~~~~~~~~~ 104 (262)
T COG1729 81 LQYQNNQNVERQEENEARLDSLES 104 (262)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcc
No 459
>PRK00846 hypothetical protein; Provisional
Probab=75.18 E-value=33 Score=28.09 Aligned_cols=73 Identities=15% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhccCCCh
Q 013359 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPP 212 (444)
Q Consensus 140 ~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ei~~~~g~wl~P 212 (444)
+.+.-+-..++.++.+++.++.-.+..++++...+-.+...|..+..++..+..+..+........++-=.||
T Consensus 2 ~~~~~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~~~~~~dE~PP 74 (77)
T PRK00846 2 EQLSLRDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTLFADPADEPPP 74 (77)
T ss_pred chhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCc
No 460
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.00 E-value=15 Score=36.44 Aligned_cols=89 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred Ccchh--hhHHHHHHHHHHHHhhhhccCCCCCCCccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH----HH
Q 013359 1 MAASK--LVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKD----EV 74 (444)
Q Consensus 1 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~----~e 74 (444)
|.++. +.++..++.++++...+.......-+ .+......-+..++.+++++..+|.+++..+++.+++.. ..
T Consensus 13 ~l~a~v~~~~s~~~~~~l~~~~~a~~~q~~k~~--~~~~~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~ 90 (247)
T COG3879 13 MLDAGVFWMLSISLAMLLAGVMLAAVFQTSKGE--SVRRARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTD 90 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc--chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013359 75 VAQKEKAIQDKSERIVS 91 (444)
Q Consensus 75 Ik~~e~~I~e~e~~I~e 91 (444)
-+.+++.++.+...+..
T Consensus 91 ~~~ie~~l~~l~~~aG~ 107 (247)
T COG3879 91 DAALEDRLEKLRMLAGS 107 (247)
T ss_pred HHHHHHHHHHHHHHhcc
No 461
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=74.87 E-value=26 Score=27.46 Aligned_cols=48 Identities=29% Similarity=0.439 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 126 DNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSK 173 (444)
Q Consensus 126 e~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekq 173 (444)
+.++.++...+...-..+.++.+.+.+-.++..+++.|...+++.+.+
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 462
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=74.82 E-value=90 Score=35.99 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 013359 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID 126 (444)
Q Consensus 47 L~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe 126 (444)
++..+.-+.....+++++ |.+++++..+.+....+.+....+++.....++.+.....+++....++--.+++..+.
T Consensus 499 i~~A~~~~~~~~~~~~~l---i~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~ 575 (771)
T TIGR01069 499 IEQAKTFYGEFKEEINVL---IEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALK 575 (771)
T ss_pred HHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 127 NLKKESEKQQKEKEALEARAIEAEKKISDLSA 158 (444)
Q Consensus 127 ~LkkelE~~~~e~~~LEae~~elEkkleEle~ 158 (444)
+.+++.+.+-.++.+.........+....+..
T Consensus 576 ~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~ 607 (771)
T TIGR01069 576 ALKKEVESIIRELKEKKIHKAKEIKSIEDLVK 607 (771)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
No 463
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.65 E-value=1e+02 Score=31.15 Aligned_cols=161 Identities=18% Similarity=0.156 Sum_probs=0.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-------
Q 013359 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQV------- 111 (444)
Q Consensus 39 ~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i------- 111 (444)
++..++..+...+....++...+..+-.++.+... =.......-..+....++..-+..+++---...+...
T Consensus 52 ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~-~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek~~~~a~~ 130 (269)
T KOG0811|consen 52 DSPELRDKLHQERLNANQLVKDTSALLKEIDTLRL-ESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREKIPMVARG 130 (269)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccccccc
Q ss_pred -------HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 112 -------DKAHARADELE----------KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKI 174 (444)
Q Consensus 112 -------~~ae~~i~eLe----------~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI 174 (444)
.....+...+. ....-...+++.....+++.+.....+|..+.+++.-..+|-..+.++-..+
T Consensus 131 s~~s~~~~~~~~~~~~~~~~~~~~~~q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~V 210 (269)
T KOG0811|consen 131 SQNSQQLDEESPRVDELSNNGSQSQQQLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELV 210 (269)
T ss_pred cccchhhhhhhhhhhhhhccchhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH
Q 013359 175 RKTERALKVAEEEMMRAKFEATSRSK 200 (444)
Q Consensus 175 ~elE~~Lq~~Eeel~kak~E~~~~a~ 200 (444)
+.++..+..+..-......++...+.
T Consensus 211 DsIe~nve~a~~nveqg~~~L~kA~~ 236 (269)
T KOG0811|consen 211 DSIEANVENASVNVEQGTENLRKAAK 236 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
No 464
>PLN02939 transferase, transferring glycosyl groups
Probab=74.60 E-value=1.9e+02 Score=34.35 Aligned_cols=194 Identities=24% Similarity=0.213 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 013359 41 SPLKIELDQLKSKIRSLESHIDEKTQEL---KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHAR 117 (444)
Q Consensus 41 ~~l~~eL~~l~~ki~~Lesqi~ele~eI---~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~ 117 (444)
.++-.+++.++.+=--|...|..+..++ .+.++-+-.++++-.-+...+.+|++++...|...+.+..-+.+-.=++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (977)
T PLN02939 222 HSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEK 301 (977)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 118 ADELEKQIDNLKKESEKQ----------QKEKEALEARAIEA----------EKKISDLSAKLEKLQKINDEQKSKIRKT 177 (444)
Q Consensus 118 i~eLe~qIe~LkkelE~~----------~~e~~~LEae~~el----------EkkleEle~kveeLe~~~eeqekqI~el 177 (444)
++.|+.-++...++.+.. ....+.|++-+.+. +...+.+...-+.++....+...+++-.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (977)
T PLN02939 302 VENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLY 381 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhhhccCCChhHHHHHHhhhHhhhhhhhccCCcchHHHH
Q 013359 178 ERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVAI 241 (444)
Q Consensus 178 E~~Lq~~Eeel~kak~E~~~~a~ei~~~~g~wl~Pw~~~~~~~~~~~~~~~w~~hg~p~~~~~~ 241 (444)
+..++..++.+..++.|....+.+..- ..+.|---..-+.++-. |-+-|.--.+++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lll~id~-----~~~~~~~~~~~a~ 438 (977)
T PLN02939 382 QESIKEFQDTLSKLKEESKKRSLEHPA--DDMPSEFWSRILLLIDG-----WLLEKKISNNDAK 438 (977)
T ss_pred HHHHHHHHHHHHHHHhhhhcccccCch--hhCCHHHHHHHHHHHHH-----HHHhccCChhhHH
No 465
>PRK01203 prefoldin subunit alpha; Provisional
Probab=74.33 E-value=50 Score=29.74 Aligned_cols=94 Identities=15% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH---------------------------------
Q 013359 62 DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAA--------------------------------- 108 (444)
Q Consensus 62 ~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~--------------------------------- 108 (444)
.++..+++-.++++..+..++..+...+.++..-++++.........
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VE 82 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIA 82 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEE
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kv 160 (444)
+.... .+..++++++.|++-+..+.....+++...+++- +.++...+
T Consensus 83 K~~e~---kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~--~~~~~~~~ 129 (130)
T PRK01203 83 EERER---TIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY--ITEATRNV 129 (130)
T ss_pred ecHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccC
No 466
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=74.10 E-value=67 Score=32.44 Aligned_cols=149 Identities=15% Similarity=0.239 Sum_probs=0.0
Q ss_pred hhhccCCCCCCCccCccCCCCchHHHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHH-----HHHHHHHH
Q 013359 21 DVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEK-TQELKGKDEVVAQKEKAIQDKS-----ERIVSLQK 94 (444)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~eL~~l~~ki~~Lesqi~el-e~eI~~k~~eIk~~e~~I~e~e-----~~I~eLq~ 94 (444)
|..+.+-+++--++-..+.+.-+.....++...+..+...+... +..+......+..+...+.... ..|...+.
T Consensus 119 D~ti~D~vAd~ra~TPtaaAe~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~ 198 (319)
T PF02601_consen 119 DFTIADFVADLRAPTPTAAAELIVPDRRELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQ 198 (319)
T ss_pred CchHHHHHHHhhCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 95 ELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQ 170 (444)
Q Consensus 95 kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeq 170 (444)
+++.+...+.......+.....++..+..++....-...-.... ..+..-...+...+......++.+...+..+
T Consensus 199 ~Ld~l~~rL~~~~~~~l~~~~~~L~~l~~~l~~~~~~~~l~~~~-~~~~~l~~~~~~~l~~~~~~l~~~~~~L~~l 273 (319)
T PF02601_consen 199 RLDELKQRLKQAIQQKLQRKRQRLQNLSNRLKRQSPQQKLNQQR-QQLQRLQKRLQRKLSQKRQRLERLEARLEAL 273 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH-HHhhhhhHHHhhhhHHHHHHHHHHHHHHHcC
No 467
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=73.80 E-value=49 Score=30.42 Aligned_cols=79 Identities=24% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 112 DKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSA---KLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (444)
Q Consensus 112 ~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~---kveeLe~~~eeqekqI~elE~~Lq~~Eeel 188 (444)
.++..=+......|...+...+..+.++..++.++.+..+.+..+.. .+++|+..+++++..........+.--..+
T Consensus 2 eqi~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 2 EQIDKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred hHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 013359 189 MR 190 (444)
Q Consensus 189 ~k 190 (444)
..
T Consensus 82 ~~ 83 (155)
T PF06810_consen 82 KK 83 (155)
T ss_pred HH
No 468
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.73 E-value=1.2e+02 Score=31.65 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 013359 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADEL 121 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eL 121 (444)
..+++++.+.++++.+...-+++...+++++.++..+|.+.......|.-|.++++..+.+...+....++.+-....-|
T Consensus 222 r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~~~~~~~l 301 (365)
T KOG2391|consen 222 RREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEAIECTAPL 301 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhhhhccchH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERA 180 (444)
Q Consensus 122 e~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~ 180 (444)
-+|+-+.=..=..++.-+-.|+.-+..=+-.+.+.-+.+..|..+.=-+....+...+.
T Consensus 302 ~kq~l~~~A~d~aieD~i~~L~~~~r~G~i~l~~yLr~VR~lsReQF~~rat~qk~r~~ 360 (365)
T KOG2391|consen 302 YKQILECYALDLAIEDAIYSLGKSLRDGVIDLDQYLRHVRLLSREQFILRATMQKCRQT 360 (365)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 469
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=73.70 E-value=1.4e+02 Score=32.26 Aligned_cols=120 Identities=19% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Q 013359 83 QDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKE----------ALEARAIEAEKK 152 (444)
Q Consensus 83 ~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~----------~LEae~~elEkk 152 (444)
.....++..|..+++.|| -.+..+.+.++++..++.+-....-+.-.++.... .++.+... ++
T Consensus 238 k~akehv~km~kdle~Lq-----~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r--ke 310 (575)
T KOG4403|consen 238 KKAKEHVNKMMKDLEGLQ-----RAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR--KE 310 (575)
T ss_pred hHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH--HH
Q ss_pred HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhccC
Q 013359 153 ISDLSAKLEKLQKIND-----------------EQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAW 209 (444)
Q Consensus 153 leEle~kveeLe~~~e-----------------eqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ei~~~~g~w 209 (444)
++.+...++..+.+++ ..+.+.+-++.+-+.++.++..+++....+.++-+.+-|.|
T Consensus 311 lE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl 384 (575)
T KOG4403|consen 311 LEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTL 384 (575)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheee
No 470
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=73.64 E-value=33 Score=26.81 Aligned_cols=52 Identities=37% Similarity=0.547 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 120 ELEKQIDNLKKESEKQQKEKEALEAR--------------AIEAEKKISDLSAKLEKLQKINDEQK 171 (444)
Q Consensus 120 eLe~qIe~LkkelE~~~~e~~~LEae--------------~~elEkkleEle~kveeLe~~~eeqe 171 (444)
+++.++.+|+++++.++.++..++.+ ...-..++.++...++.++..+..++
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 471
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.60 E-value=47 Score=36.12 Aligned_cols=112 Identities=20% Similarity=0.290 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIE 148 (444)
Q Consensus 69 ~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~e 148 (444)
+++..-++--+......-.-|..+.+++..|| +...+..-++.+++.+..+|..+|-++=-.++-++..--.|...-++
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq-k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~ 415 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQ-KHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEE 415 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 149 AEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (444)
Q Consensus 149 lEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~E 185 (444)
+..++..+...++.= .+++.+++++.+.+....
T Consensus 416 Lr~Kldtll~~ln~P----nq~k~Rl~~L~e~~r~q~ 448 (508)
T KOG3091|consen 416 LRAKLDTLLAQLNAP----NQLKARLDELYEILRMQN 448 (508)
T ss_pred HHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHhhc
No 472
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=73.59 E-value=91 Score=30.18 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 013359 75 VAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEAR----AIEAE 150 (444)
Q Consensus 75 Ik~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae----~~elE 150 (444)
+..-+..+......+......+..|+ ....-....-......|+..+..+++++..++.+++.++.. ..++-
T Consensus 99 ~~~w~~al~na~a~lehq~~R~~NLe----Ll~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~ 174 (221)
T PF05700_consen 99 VEAWKEALDNAYAQLEHQRLRLENLE----LLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAG 174 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 151 KKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (444)
Q Consensus 151 kkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak 192 (444)
.++..++.+-.++-.++-+.+..+..++.++..++.+....+
T Consensus 175 ~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 175 EELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 473
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=73.38 E-value=97 Score=32.31 Aligned_cols=84 Identities=26% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL-EKLQKINDEQKSKIRKTERALKVAEEEMM 189 (444)
Q Consensus 111 i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kv-eeLe~~~eeqekqI~elE~~Lq~~Eeel~ 189 (444)
++-+-..+..+..++..|.++.+.+..+...+.+++.++-....+.+..+ ..--..+.+.+.+|+++++.|..++....
T Consensus 132 ~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~~ 211 (342)
T PF06632_consen 132 FDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEEEK 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccc
Q ss_pred HHHHH
Q 013359 190 RAKFE 194 (444)
Q Consensus 190 kak~E 194 (444)
..+.+
T Consensus 212 ~~~~~ 216 (342)
T PF06632_consen 212 SPKQE 216 (342)
T ss_dssp HHH--
T ss_pred chhhh
No 474
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=73.38 E-value=1.1e+02 Score=32.82 Aligned_cols=149 Identities=21% Similarity=0.219 Sum_probs=0.0
Q ss_pred cCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhhHHHHH
Q 013359 34 ASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIV--SLQKELSSLQKKETLNAAEQV 111 (444)
Q Consensus 34 ~~~~~~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~--eLq~kI~sLqkK~s~~~~~~i 111 (444)
............++..++.+|..|+.--+.-.+++.+--..|...-..+.+.+-.+. .=..-|++-..+++.
T Consensus 140 ~~~~~~~~~~~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~------ 213 (424)
T PF03915_consen 140 SSPQSTSKSDLKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSE------ 213 (424)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHHHH------
T ss_pred cCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHH------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Q 013359 112 DKAHARADELEKQIDNLKKESEKQQKEKE-----ALEARAIEAEKKISDLSAKLEKLQKIND------------------ 168 (444)
Q Consensus 112 ~~ae~~i~eLe~qIe~LkkelE~~~~e~~-----~LEae~~elEkkleEle~kveeLe~~~e------------------ 168 (444)
+...|-+++++|+..+|.+..+.. =....+..+.+.+..+...+..+..-+.
T Consensus 214 -----~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~ 288 (424)
T PF03915_consen 214 -----ESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVC 288 (424)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 169 EQKSKIRKTERALKVAEEEMMRAKF 193 (444)
Q Consensus 169 eqekqI~elE~~Lq~~Eeel~kak~ 193 (444)
+-++.+...+.-+..+++.+.++..
T Consensus 289 eEQqfL~~QedL~~DL~eDl~k~~e 313 (424)
T PF03915_consen 289 EEQQFLKLQEDLLSDLKEDLKKASE 313 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=73.26 E-value=93 Score=32.09 Aligned_cols=142 Identities=20% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE 133 (444)
Q Consensus 54 i~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE 133 (444)
+++-+.-|++++.. .+.+.+.--++.+..-+..+.+.++.+...+.+... .+.+++.+-.-.-|..|+.++-
T Consensus 162 lkqse~lIN~Ls~r--Ar~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~kngv------fdp~~qaevq~~Lvs~Le~eL~ 233 (372)
T COG3524 162 LKQSEKLINQLSER--ARRDTVRFAEEEVQKAEERVKKASNDLTDYRIKNGV------FDPKAQAEVQMSLVSKLEDELI 233 (372)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCc------cChhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhHHhh
Q 013359 134 KQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTER--ALKVAEEEMMRAKFEATSRSKELT 203 (444)
Q Consensus 134 ~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~--~Lq~~Eeel~kak~E~~~~a~ei~ 203 (444)
.++.++..+.+..+.-.-++--+..+++.+.+++..+.++|.--.. .+...-.+-+++..|.+=..++.+
T Consensus 234 ~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~~qaAefq~l~lE~~fAekay~ 305 (372)
T COG3524 234 VIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLSNQAAEFQRLYLENTFAEKAYA 305 (372)
T ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHHH
No 476
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=73.21 E-value=65 Score=37.55 Aligned_cols=159 Identities=16% Similarity=0.110 Sum_probs=0.0
Q ss_pred CCCCccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 013359 29 VPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAA 108 (444)
Q Consensus 29 ~~~~~~~~~~~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~ 108 (444)
+++.......+..-....+..+..++..++.++.+.+...+....++.++....++.+..+..|..++..++
T Consensus 451 ~~e~~~~~~~~~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le-------- 522 (913)
T KOG0244|consen 451 GDEAAEKELSETIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLE-------- 522 (913)
T ss_pred CchhhhcccccCccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccc--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel 188 (444)
.+.++|-+++.........+-.+....-+.++.-.+.+.........+.+.-..-+.....+..+|
T Consensus 523 --------------~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei 588 (913)
T KOG0244|consen 523 --------------SERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEI 588 (913)
T ss_pred --------------cccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhHHhhhhhccC
Q 013359 189 MRAKFEATSRSKELTEVHSAW 209 (444)
Q Consensus 189 ~kak~E~~~~a~ei~~~~g~w 209 (444)
..++..-.++..+..+..-+|
T Consensus 589 ~~~k~~kv~l~~~~~~d~ekf 609 (913)
T KOG0244|consen 589 HIAKGQKVQLLRVMKEDAEKF 609 (913)
T ss_pred HHHHHHHHHHHHHHhhhHHHH
No 477
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=73.16 E-value=17 Score=37.51 Aligned_cols=107 Identities=18% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 110 QVDKAHARADELEKQID-NLKKESEKQQKEKEALEARA-IEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (444)
Q Consensus 110 ~i~~ae~~i~eLe~qIe-~LkkelE~~~~e~~~LEae~-~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eee 187 (444)
.+.++....+.-..|.+ .-++-+-..........--- ++|..++.+|-..|-.|+..+=+++++...++-+|..+.+.
T Consensus 194 n~~qak~e~~mtKeQqEdakk~~l~aiRkk~~~~~~~~e~~LkeKiKELhqrI~kLE~EKyDLekR~eRQeYDlkeL~eR 273 (361)
T KOG3634|consen 194 NIVQAKQEMGMTKEQQEDAKKKFLLAIRKKPLNISELPENDLKEKIKELHQRICKLETEKYDLEKRHERQEYDLKELNER 273 (361)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhccHHHHHHH
Q ss_pred HHHHHHHHhhhhHHh-hhhhccCCChhHHH
Q 013359 188 MMRAKFEATSRSKEL-TEVHSAWLPPWLAV 216 (444)
Q Consensus 188 l~kak~E~~~~a~ei-~~~~g~wl~Pw~~~ 216 (444)
+.........+..-- ..+||.|-|||+.+
T Consensus 274 qrq~~r~~~~k~g~d~~~v~g~~~p~k~~~ 303 (361)
T KOG3634|consen 274 QRQVQRNSALKKGLDPEEVTGRWKPPKVQI 303 (361)
T ss_pred HHHHHHHHHhhcCCChhhhcCCCCCceeeh
No 478
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=73.09 E-value=16 Score=28.98 Aligned_cols=51 Identities=16% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKET 104 (444)
Q Consensus 54 i~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s 104 (444)
+..++.++..++..+++.++.+..+|......+..|..+..+|+.+..-..
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=72.69 E-value=90 Score=29.73 Aligned_cols=116 Identities=21% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 76 AQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARA-DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKIS 154 (444)
Q Consensus 76 k~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i-~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkle 154 (444)
..+...-.+...-|.+-+.+...+.++......++.......+ .+++.....++..-..+...-..|+.+...++++-.
T Consensus 27 ~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~ 106 (201)
T PF12072_consen 27 KKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREE 106 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 155 DLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (444)
Q Consensus 155 Ele~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~ka 191 (444)
.+..+-..|......+.....+++.-+......|.+.
T Consensus 107 ~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~i 143 (201)
T PF12072_consen 107 ELEKKEEELEQRKEELEEREEELEELIEEQQQELEEI 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=72.65 E-value=94 Score=29.97 Aligned_cols=143 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK 123 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~ 123 (444)
..+++.++..+-+-+..+.-+.+++.. ++.....-..-+.+|.+|+.++...+..... .+..+..
T Consensus 46 ~~q~~~Lq~qLlq~~k~~~~l~~eLq~----l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~-----------~l~~~~~ 110 (206)
T PF14988_consen 46 AKQTSELQDQLLQKEKEQAKLQQELQA----LKEFRRLKEQQEREIQTLEEELEKMRAEHAE-----------KLQEAES 110 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 124 QIDNLKKESEKQQKEKEALEARAIEAEK-----------KISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (444)
Q Consensus 124 qIe~LkkelE~~~~e~~~LEae~~elEk-----------kleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak 192 (444)
+.-.-+..++..-.+..-+.--...-.. -..-+......+..++..+...+..+-.+...++.....++
T Consensus 111 qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le 190 (206)
T PF14988_consen 111 QFLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLE 190 (206)
T ss_pred HHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhHH
Q 013359 193 FEATSRSKE 201 (444)
Q Consensus 193 ~E~~~~a~e 201 (444)
..-..+..+
T Consensus 191 ~qk~~L~~e 199 (206)
T PF14988_consen 191 KQKQQLQQE 199 (206)
T ss_pred HHHHHHHHH
No 481
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=72.59 E-value=28 Score=38.94 Aligned_cols=91 Identities=22% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 107 AAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEE 186 (444)
Q Consensus 107 ~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Ee 186 (444)
.........+....++.++..++++++.++.++.++++.+.+-+.--.....++..+..+.++.+.+++++..+...+++
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~ 626 (638)
T PRK10636 547 QKRREAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQE 626 (638)
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhh
Q 013359 187 EMMRAKFEATS 197 (444)
Q Consensus 187 el~kak~E~~~ 197 (444)
++..+..|...
T Consensus 627 ~~~~~~~~~~~ 637 (638)
T PRK10636 627 QLEQMLLEGQS 637 (638)
T ss_pred HHHHHhhhhcc
No 482
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=72.43 E-value=27 Score=33.56 Aligned_cols=101 Identities=20% Similarity=0.262 Sum_probs=0.0
Q ss_pred ccCccCCCCchHHHHHHHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH--H
Q 013359 33 TASDAVDSSPLKIELDQLKSKIRSLESHIDE-KTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAA--E 109 (444)
Q Consensus 33 ~~~~~~~~~~l~~eL~~l~~ki~~Lesqi~e-le~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~--~ 109 (444)
..+.+-+...|+.||.+|..+|...+...+. -...=....---.+.+..+.=++.++.++.+ ...+.+..+.. +
T Consensus 91 ~~~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~---~~~~~~~~l~~v~~ 167 (195)
T PF12761_consen 91 TEGTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE---GRSKSGKNLKSVRE 167 (195)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc---cCCCCCCCHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 110 QVDKAHARADELEKQIDNLKKESEKQQ 136 (444)
Q Consensus 110 ~i~~ae~~i~eLe~qIe~LkkelE~~~ 136 (444)
.++.+++++..|+.=+..-+.+|+.++
T Consensus 168 Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 168 DLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
No 483
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=72.36 E-value=1.5e+02 Score=32.04 Aligned_cols=131 Identities=12% Similarity=0.109 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQE--LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~e--I~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~e 120 (444)
...+++..+.++...+..+.+..+. +=+-..+....-..|.+++.++.+++.+++.++.-.+.. .-++-.++.+|..
T Consensus 247 Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~-sPqV~~l~~rI~a 325 (434)
T PRK15178 247 LENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQ-NPLIPRLSAKIKV 325 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCchhHHHHHHHH
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 121 LEKQIDNLKKESE------KQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKI 174 (444)
Q Consensus 121 Le~qIe~LkkelE------~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI 174 (444)
|+.||+..+..+- .....+.+.+.-.-+.+=--+.+..-+..++.-..+...+.
T Consensus 326 Le~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~RQ~ 385 (434)
T PRK15178 326 LEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQALRER 385 (434)
T ss_pred HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 484
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=72.21 E-value=1.5e+02 Score=32.27 Aligned_cols=160 Identities=22% Similarity=0.213 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-H--HHHHH
Q 013359 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVD-K--AHARA 118 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~-~--ae~~i 118 (444)
++..+-+.....+...-..+...+.....+.+... .......--..+.+++..++.+...+.....+-.. + |..-+
T Consensus 170 al~~~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iL 248 (511)
T PF09787_consen 170 ALKREDGNAITAVVEFLKRTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRIL 248 (511)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHH---H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 119 DELEKQIDNLKK---E-----------SEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (444)
Q Consensus 119 ~eLe~qIe~Lkk---e-----------lE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~ 184 (444)
...++.|+.|+. . ++.+..+.+.+..+...++.++..+...+.+++...........+.-+.+...
T Consensus 249 q~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~ 328 (511)
T PF09787_consen 249 QSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQ 328 (511)
T ss_pred cCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhHHh
Q 013359 185 EEEMMRAKFEATSRSKEL 202 (444)
Q Consensus 185 Eeel~kak~E~~~~a~ei 202 (444)
-......+.+......++
T Consensus 329 ~~~~~~~e~e~~l~~~el 346 (511)
T PF09787_consen 329 LEPELTTEAELRLYYQEL 346 (511)
T ss_pred HHHHhchHHHHHHHHHHH
No 485
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=72.17 E-value=1.1e+02 Score=35.39 Aligned_cols=113 Identities=14% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 57 LESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (444)
Q Consensus 57 Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~ 136 (444)
+...-.+++.=|++++++..+.+...++.+....+++.....++.+.....++.....++--.+++..+.+.+.+.+.+-
T Consensus 511 ~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i 590 (782)
T PRK00409 511 IGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEII 590 (782)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 013359 137 KEKEALEARAI--EAEKKISDLSAKLEKLQKINDE 169 (444)
Q Consensus 137 ~e~~~LEae~~--elEkkleEle~kveeLe~~~ee 169 (444)
.++.+...... .......+....+..+.....+
T Consensus 591 ~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 625 (782)
T PRK00409 591 KELRQLQKGGYASVKAHELIEARKRLNKANEKKEK 625 (782)
T ss_pred HHHHHhhhcccchhhHHHHHHHHHHHHHhhhhhhh
No 486
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=72.07 E-value=73 Score=28.48 Aligned_cols=90 Identities=21% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 013359 90 VSLQKELSSLQKKETLNAA---EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEAR------AIEAEKKISDLSAKL 160 (444)
Q Consensus 90 ~eLq~kI~sLqkK~s~~~~---~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae------~~elEkkleEle~kv 160 (444)
++..+++++|.++...+.. .....-+.+...++.++.++.+-..........+... ..+....++.+..-.
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~ 102 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLL 102 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013359 161 EKLQKINDEQKSKIRKTER 179 (444)
Q Consensus 161 eeLe~~~eeqekqI~elE~ 179 (444)
.+|++.+.+++..|+..+.
T Consensus 103 ~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 103 NKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
No 487
>PLN02320 seryl-tRNA synthetase
Probab=71.87 E-value=61 Score=35.51 Aligned_cols=129 Identities=11% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhccCCCCCCCccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 013359 12 FFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVS 91 (444)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~e 91 (444)
|+...+++..+..+.......-...+...--.--.+.-++...+.+...+......+. -++|-+++....+...++..
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mlD~k~ir~n~~~v~~~l~~R~~~~~--vd~l~~ld~~~r~~~~~~~~ 111 (502)
T PLN02320 34 LLVRAFSASAAVQDIPATQKSDSSVARPQWKAAIDFKWIRDNKEAVAINIRNRNSNAN--LELVLELYENMLALQKEVER 111 (502)
T ss_pred HHHHHHhhhhcccCCCccccccCcccccccccccCHHHHHhCHHHHHHHHHhcCCCcC--HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 92 LQKELSSLQKKETL-NAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEAL 142 (444)
Q Consensus 92 Lq~kI~sLqkK~s~-~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~L 142 (444)
|+.+...+.+++.. ........+.++...+.+++..|+.++...+.++..+
T Consensus 112 lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 112 LRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=71.70 E-value=1.7e+02 Score=33.69 Aligned_cols=160 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred CccCCCCchHHHHHHHHHHHHH-----------HHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHH----------
Q 013359 35 SDAVDSSPLKIELDQLKSKIRS-----------LESHIDEKTQELKGKDEV------VAQKEKAIQDKSE---------- 87 (444)
Q Consensus 35 ~~~~~~~~l~~eL~~l~~ki~~-----------Lesqi~ele~eI~~k~~e------Ik~~e~~I~e~e~---------- 87 (444)
+.|+-...|+..|+.|+.++.. |..++..+.++++.+=.+ |+++=+.+.....
T Consensus 476 S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~ 555 (762)
T PLN03229 476 TEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSK 555 (762)
T ss_pred HHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchh
Q ss_pred --------------------HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH------
Q 013359 88 --------------------RIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID-NLKKESEKQQKEKE------ 140 (444)
Q Consensus 88 --------------------~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe-~LkkelE~~~~e~~------ 140 (444)
...+++.......+-+.+.-..--..++++|..++++|+ ++..-+....-+..
T Consensus 556 a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~g~s~~~~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e 635 (762)
T PLN03229 556 AEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKN 635 (762)
T ss_pred hhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhh
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 013359 141 --------------ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE--------RALKVAEEEMMRAKFEA 195 (444)
Q Consensus 141 --------------~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE--------~~Lq~~Eeel~kak~E~ 195 (444)
++++-.+++.+++.++-. ..+|..+++.++..+...- ++|+.++.+|.+.-.++
T Consensus 636 ~a~~~~~p~~~~k~KIe~L~~eIkkkIe~av~-ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a 711 (762)
T PLN03229 636 KDTAEQTPPPNLQEKIESLNEEINKKIERVIR-SSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEA 711 (762)
T ss_pred hcccccCCChhhHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
No 489
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=71.67 E-value=1e+02 Score=30.08 Aligned_cols=152 Identities=20% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-
Q 013359 51 KSKIRSLESHIDEKTQEL-KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNL- 128 (444)
Q Consensus 51 ~~ki~~Lesqi~ele~eI-~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~L- 128 (444)
+.+|+.+..+.....+++ .+...--..-+..+......|..|...|..--++.......--...+..+..+...++..
T Consensus 4 ~~KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~ 83 (247)
T PF06705_consen 4 KSKLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQI 83 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHh
Q 013359 129 KKESEKQQKEKEALEARAIEAEKKISDLSAKLEK-LQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (444)
Q Consensus 129 kkelE~~~~e~~~LEae~~elEkkleEle~kvee-Le~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ei 202 (444)
....+.+...+..+..+...++..+.+....... ++....++...+..+...+..-...-...+.....+-.+.
T Consensus 84 ~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~ 158 (247)
T PF06705_consen 84 SEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEE 158 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=71.53 E-value=53 Score=35.03 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH--HHHHHHHHHHHHHHHH
Q 013359 54 IRSLESHIDEKTQELKGK-----DEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQ--VDKAHARADELEKQID 126 (444)
Q Consensus 54 i~~Lesqi~ele~eI~~k-----~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~--i~~ae~~i~eLe~qIe 126 (444)
+.-+....+.+...++.+ =++|-+++.+..+...++..|+.+...+.+++...+... ...+.+++.++.+++.
T Consensus 4 ~k~ir~n~~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~ 83 (425)
T PRK05431 4 IKLIRENPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIK 83 (425)
T ss_pred HHHHHhCHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 013359 127 NLKKESEKQQKEKEAL 142 (444)
Q Consensus 127 ~LkkelE~~~~e~~~L 142 (444)
.+++++..++.++..+
T Consensus 84 ~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 84 ALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHH
No 491
>PTZ00464 SNF-7-like protein; Provisional
Probab=71.51 E-value=1e+02 Score=29.89 Aligned_cols=140 Identities=8% Similarity=0.129 Sum_probs=0.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHhh
Q 013359 38 VDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEK---------------AIQDKSERIVSLQKELSSLQKK 102 (444)
Q Consensus 38 ~~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~---------------~I~e~e~~I~eLq~kI~sLqkK 102 (444)
.+...+..-+..++.++..++.+|..++.++......+++... ...-.++++..+.+.+..++.-
T Consensus 11 ~p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~ 90 (211)
T PTZ00464 11 TPKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQL 90 (211)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 013359 103 ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTER--- 179 (444)
Q Consensus 103 ~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~--- 179 (444)
...+ ..+..-..-++.+..-...+..-...+ .+..+..-++++++..+..+.--+-+-.
T Consensus 91 ~~~i----------------e~a~~~~~vv~amk~g~kaLK~~~k~i--~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~ 152 (211)
T PTZ00464 91 QFTT----------------ESVKDTKVQVDAMKQAAKTLKKQFKKL--NVDKVEDLQDELADLYEDTQEIQEIMGRAYD 152 (211)
T ss_pred HHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q ss_pred -----HHHHHHHHHHHHHHHH
Q 013359 180 -----ALKVAEEEMMRAKFEA 195 (444)
Q Consensus 180 -----~Lq~~Eeel~kak~E~ 195 (444)
.-..+++|+..+..+.
T Consensus 153 ~~~~~DEdELe~ELe~Le~e~ 173 (211)
T PTZ00464 153 VPDDIDEDEMLGELDALDFDM 173 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
No 492
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=70.99 E-value=1.4e+02 Score=31.25 Aligned_cols=115 Identities=16% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHH
Q 013359 51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSER-IVSLQKELSSLQKKE--TLNAAEQVDKAHARADELEKQIDN 127 (444)
Q Consensus 51 ~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~-I~eLq~kI~sLqkK~--s~~~~~~i~~ae~~i~eLe~qIe~ 127 (444)
+..+.+++..+...+..+...+.++......|.+.+.. +...+.+.+-.+.=. ..+..++++.+...+...+..+..
T Consensus 90 ~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~ 169 (352)
T COG1566 90 RAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAALQAAEAALAA 169 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIND 168 (444)
Q Consensus 128 LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~e 168 (444)
-+ +..+.+...+++...+.+..+..+...++...-.++
T Consensus 170 a~---~~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~ 207 (352)
T COG1566 170 AQ---AAQKQNLALLESEVSGAQAQVASAEAALDQAKLDLE 207 (352)
T ss_pred hH---HHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhh
No 493
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=70.86 E-value=91 Score=29.03 Aligned_cols=131 Identities=17% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH----
Q 013359 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK---- 123 (444)
Q Consensus 48 ~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~---- 123 (444)
++.+.-...+..-+++--..+...----.++++..-.....+++|..++..+.+.--..-..+...+..++..++.
T Consensus 19 ~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 19 EQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELRE 98 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 124 QIDNLKKESE-KQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (444)
Q Consensus 124 qIe~LkkelE-~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~L 181 (444)
+|..++.++. +++.++.....+....+.++.+++.++ ...+..+..+|+..+-++
T Consensus 99 ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki---~~ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 99 EINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKI---DTEIANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
No 494
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=70.84 E-value=64 Score=27.28 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 64 KTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALE 143 (444)
Q Consensus 64 le~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LE 143 (444)
++.++..-..+++-+++.=........++.+...++..... ++.....+++..-+.|+.++.+...||
T Consensus 12 v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~------------~l~~k~~~l~~~l~~Id~Ie~~V~~LE 79 (99)
T PF10046_consen 12 VESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLE------------DLNQKYEELQPYLQQIDQIEEQVTELE 79 (99)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013359 144 ARAIEAEKKISDLSAKLEKL 163 (444)
Q Consensus 144 ae~~elEkkleEle~kveeL 163 (444)
+-...+..-..+++.++..+
T Consensus 80 ~~v~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 80 QTVYELDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHhhcC
No 495
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=70.75 E-value=81 Score=33.23 Aligned_cols=97 Identities=20% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 65 TQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEA 144 (444)
Q Consensus 65 e~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEa 144 (444)
++.+.+++.-|..+...|.+.+.+|.+...+..+....+. ..++..+..+..+-.++..+..
T Consensus 17 e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~------------------~~l~~a~~~i~~L~~~i~~ik~ 78 (383)
T PF04100_consen 17 EQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAE------------------EDLEEAQEAIQELFEKISEIKS 78 (383)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc------------------ccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 145 RAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTER 179 (444)
Q Consensus 145 e~~elEkkleEle~kveeLe~~~eeqekqI~elE~ 179 (444)
++..-|.-+.++.+.+..|...+..+-.-|.-+++
T Consensus 79 kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~Lkr 113 (383)
T PF04100_consen 79 KAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKR 113 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=70.72 E-value=1e+02 Score=29.59 Aligned_cols=128 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHHhhhhccCCCCCCCccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 013359 3 ASKLVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI 82 (444)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I 82 (444)
++-++..++.|+++++.+--.+-.+-... |+...+.+.++|++-+....+.+..+
T Consensus 53 ~~~l~w~~I~FliL~~lL~k~~~~pI~~v-------------------------Le~R~~~I~~~L~~Ae~~k~eAe~~~ 107 (204)
T PRK09174 53 ASQLLWLAITFGLFYLFMSRVILPRIGGI-------------------------IETRRDRIAQDLDQAARLKQEADAAV 107 (204)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 013359 83 QDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARAD-ELEKQIDNLKKESEKQQKEKE-ALEARAIEAEKKISD 155 (444)
Q Consensus 83 ~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~-eLe~qIe~LkkelE~~~~e~~-~LEae~~elEkkleE 155 (444)
.+.+..|.+-..+-..+-..-....+.......+++. +++..+...+++++..+.+.. ++.....++-..+-+
T Consensus 108 ~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e~A~~I~~ 182 (204)
T PRK09174 108 AAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEETAAAIVE 182 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=70.68 E-value=5 Score=43.50 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhhhhccCCCCCCCccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 013359 5 KLVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDE 73 (444)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~ 73 (444)
|-+++.+|+++++++...+.+..+ +...++ +|++|+++|++|++++.+++.+++..+.
T Consensus 2 kk~~~l~l~aall~~s~~~~a~~~----------~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 2 KKLISLSLAAALLFLSLPAAAMAD----------DIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred chhHHHHHHHHHHHhccchhhhhh----------hhHHHH-HHHHHHHHHHHHHHhhcccccccchhhH
No 498
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.68 E-value=2e+02 Score=32.81 Aligned_cols=177 Identities=11% Similarity=0.105 Sum_probs=0.0
Q ss_pred hccCCCCCCCccCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-----------HHHH
Q 013359 23 SIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE-----------RIVS 91 (444)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~-----------~I~e 91 (444)
......++.+..-.....++........+..+-+++..+..+....+-.+.++.........+.. -+..
T Consensus 33 ~~s~s~g~sP~~~q~s~~~~~~s~n~~~~s~~~~~~~~l~~Lqns~kr~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~ 112 (716)
T KOG4593|consen 33 ISSSSPGSSPNLYQPSMQSEERSENITSKSLLMQLEDELMQLQNSHKRAELELTKAQSILARNYEAEVDRKHKLLTRLRQ 112 (716)
T ss_pred hhccCCCCCccccCcCCCchhhhccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 92 LQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQK 171 (444)
Q Consensus 92 Lq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqe 171 (444)
++...+....+.........+..+++......-...++..+-.+...+.+++..+.++..++.-.+.....+...+...+
T Consensus 113 ~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~e 192 (716)
T KOG4593|consen 113 LQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEE 192 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 172 SKIRKTERALKVAEEEMMRAKFEATSRS 199 (444)
Q Consensus 172 kqI~elE~~Lq~~Eeel~kak~E~~~~a 199 (444)
+.++..-.+++.....+.....+..++.
T Consensus 193 ke~~~~~~ql~~~~q~~~~~~~~l~e~~ 220 (716)
T KOG4593|consen 193 KELDRQHKQLQEENQKIQELQASLEERA 220 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=70.63 E-value=79 Score=28.27 Aligned_cols=80 Identities=23% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISD----------------LSAKLEKLQKINDEQKSKIRKTER 179 (444)
Q Consensus 116 ~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleE----------------le~kveeLe~~~eeqekqI~elE~ 179 (444)
++-..++.++..++.++...+++++.++.-..+++--=++ .....+.|+...+.+.+.|+.++.
T Consensus 23 N~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les 102 (131)
T KOG1760|consen 23 NEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELES 102 (131)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 013359 180 ALKVAEEEMMRAKFEA 195 (444)
Q Consensus 180 ~Lq~~Eeel~kak~E~ 195 (444)
+.......+..++.-+
T Consensus 103 ~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 103 ELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHH
No 500
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.57 E-value=29 Score=28.05 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 49 ~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
.+...|..|+.++.--++-|++++..+.+....|.....++.-|-+++.+++
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Done!