Query 013359
Match_columns 444
No_of_seqs 261 out of 368
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 09:06:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013359.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013359hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a01_A Apolipoprotein A-I; fou 99.2 3.2E-11 1.1E-15 116.6 7.0 117 235-366 121-237 (243)
2 3s84_A Apolipoprotein A-IV; fo 98.8 7.6E-07 2.6E-11 87.4 23.3 16 235-250 121-136 (273)
3 3s84_A Apolipoprotein A-IV; fo 98.8 1.4E-08 4.7E-13 99.8 10.5 124 234-361 54-188 (273)
4 2a01_A Apolipoprotein A-I; fou 98.8 7E-09 2.4E-13 100.1 6.3 117 235-366 99-226 (243)
5 1nfn_A Apolipoprotein E3; lipi 98.7 1.3E-07 4.4E-12 88.3 11.9 84 258-345 107-190 (191)
6 3na7_A HP0958; flagellar bioge 98.7 4.4E-06 1.5E-10 80.9 22.9 64 43-106 23-86 (256)
7 2lem_A Apolipoprotein A-I; lip 98.7 6.2E-08 2.1E-12 91.9 9.3 111 234-361 97-207 (216)
8 1c1g_A Tropomyosin; contractIl 98.6 1.5E-05 5E-10 74.3 25.2 117 43-160 4-120 (284)
9 1nfn_A Apolipoprotein E3; lipi 98.6 1.1E-07 3.7E-12 88.7 9.7 112 251-366 78-189 (191)
10 1c1g_A Tropomyosin; contractIl 98.6 2.4E-05 8.3E-10 72.8 25.6 111 44-155 12-122 (284)
11 2lem_A Apolipoprotein A-I; lip 98.5 8.8E-08 3E-12 90.9 7.1 63 262-330 136-198 (216)
12 3r2p_A Apolipoprotein A-I; amp 98.5 1.5E-07 5.2E-12 87.1 8.1 85 277-361 83-167 (185)
13 3r2p_A Apolipoprotein A-I; amp 98.5 1.4E-07 4.7E-12 87.4 7.3 113 235-362 67-179 (185)
14 1gs9_A Apolipoprotein E, APOE4 98.4 1.6E-07 5.4E-12 85.8 4.5 106 239-352 59-164 (165)
15 2l7b_A Apolipoprotein E, APO-E 98.3 8.8E-07 3E-11 88.3 8.4 114 235-363 147-289 (307)
16 2l7b_A Apolipoprotein E, APO-E 98.3 7.6E-07 2.6E-11 88.7 7.6 104 255-362 112-230 (307)
17 3na7_A HP0958; flagellar bioge 98.3 7.9E-05 2.7E-09 72.1 21.3 52 125-176 92-143 (256)
18 1i84_S Smooth muscle myosin he 98.0 1.6E-05 5.5E-10 92.0 10.8 48 42-89 861-908 (1184)
19 1i84_S Smooth muscle myosin he 98.0 1.8E-05 6E-10 91.7 10.7 116 44-160 856-971 (1184)
20 2v71_A Nuclear distribution pr 97.9 0.0015 5.1E-08 60.5 20.2 149 46-201 25-176 (189)
21 2dfs_A Myosin-5A; myosin-V, in 97.9 0.00027 9.1E-09 81.1 18.5 125 54-186 923-1051(1080)
22 1gs9_A Apolipoprotein E, APOE4 97.7 3.1E-05 1E-09 70.6 5.6 79 283-361 73-151 (165)
23 2efr_A General control protein 97.7 0.021 7.2E-07 51.3 23.3 64 125-188 72-135 (155)
24 3oja_B Anopheles plasmodium-re 97.6 0.0012 4.1E-08 70.1 16.2 33 67-99 457-489 (597)
25 2dfs_A Myosin-5A; myosin-V, in 97.5 0.0012 4.1E-08 75.8 16.6 24 113-136 988-1011(1080)
26 2efr_A General control protein 97.5 0.019 6.6E-07 51.5 20.4 62 43-104 26-87 (155)
27 2fxo_A Myosin heavy chain, car 97.4 0.011 3.7E-07 51.4 17.5 28 148-175 94-121 (129)
28 3o0z_A RHO-associated protein 97.4 0.046 1.6E-06 49.6 21.5 47 53-99 7-53 (168)
29 3u1c_A Tropomyosin alpha-1 cha 97.3 0.012 4.2E-07 49.1 15.8 54 47-100 4-57 (101)
30 3o0z_A RHO-associated protein 97.3 0.083 2.8E-06 47.9 21.7 122 42-164 10-138 (168)
31 3oja_B Anopheles plasmodium-re 97.3 0.0054 1.8E-07 65.0 16.2 61 138-198 517-577 (597)
32 3vkg_A Dynein heavy chain, cyt 97.2 0.019 6.5E-07 72.1 22.7 39 59-97 1927-1965(3245)
33 2v71_A Nuclear distribution pr 97.2 0.15 5E-06 47.2 24.4 142 44-189 9-154 (189)
34 3u59_A Tropomyosin beta chain; 97.1 0.02 6.7E-07 47.7 15.3 54 47-100 4-57 (101)
35 3vkg_A Dynein heavy chain, cyt 97.1 0.034 1.2E-06 69.9 23.7 63 124-186 2015-2077(3245)
36 2fxo_A Myosin heavy chain, car 97.1 0.086 2.9E-06 45.7 19.1 39 144-182 83-121 (129)
37 4gkw_A Spindle assembly abnorm 96.2 0.54 1.9E-05 40.8 22.2 133 69-202 21-156 (167)
38 3u59_A Tropomyosin beta chain; 96.1 0.32 1.1E-05 40.3 15.4 10 172-181 86-95 (101)
39 3tnu_B Keratin, type II cytosk 96.0 0.11 3.9E-06 44.9 13.0 13 86-98 42-54 (129)
40 2eqb_B RAB guanine nucleotide 95.9 0.25 8.4E-06 40.9 13.8 58 43-100 3-60 (97)
41 3tnu_A Keratin, type I cytoske 95.9 0.11 3.8E-06 45.0 12.5 22 78-99 36-57 (131)
42 3tnu_B Keratin, type II cytosk 95.9 0.17 5.7E-06 43.8 13.6 45 109-153 29-73 (129)
43 3tnu_A Keratin, type I cytoske 95.8 0.16 5.3E-06 44.1 12.7 45 109-153 31-75 (131)
44 3ghg_A Fibrinogen alpha chain; 95.8 0.27 9.3E-06 51.6 16.4 47 115-161 108-155 (562)
45 1deq_A Fibrinogen (alpha chain 95.5 0.32 1.1E-05 49.2 15.3 41 119-159 116-156 (390)
46 3hnw_A Uncharacterized protein 95.5 0.19 6.5E-06 44.2 12.2 56 45-100 68-123 (138)
47 2b9c_A Striated-muscle alpha t 95.4 0.066 2.3E-06 47.6 9.2 24 74-97 39-62 (147)
48 3hnw_A Uncharacterized protein 95.3 0.41 1.4E-05 42.1 13.7 55 109-163 68-122 (138)
49 2ocy_A RAB guanine nucleotide 95.2 1.7 5.7E-05 38.9 20.7 25 169-193 112-136 (154)
50 1ic2_A Tropomyosin alpha chain 95.1 0.34 1.2E-05 38.5 11.7 47 146-192 22-68 (81)
51 1ic2_A Tropomyosin alpha chain 94.9 0.51 1.7E-05 37.5 12.2 62 118-179 8-69 (81)
52 1deq_A Fibrinogen (alpha chain 94.8 1.2 4.1E-05 45.0 17.1 22 124-145 135-156 (390)
53 3ghg_A Fibrinogen alpha chain; 94.8 0.33 1.1E-05 51.0 13.4 41 141-181 114-154 (562)
54 2b9c_A Striated-muscle alpha t 94.8 1.2 4.2E-05 39.4 15.5 12 117-128 53-64 (147)
55 2v4h_A NF-kappa-B essential mo 94.6 0.44 1.5E-05 40.1 11.3 40 117-156 63-102 (110)
56 1l8d_A DNA double-strand break 94.5 0.81 2.8E-05 38.0 13.1 22 78-99 22-43 (112)
57 2xzr_A Immunoglobulin-binding 94.5 1.7 5.9E-05 35.7 17.2 82 51-140 5-86 (114)
58 2ocy_A RAB guanine nucleotide 94.4 2.6 8.9E-05 37.6 21.1 31 161-191 111-141 (154)
59 3nmd_A CGMP dependent protein 94.4 0.1 3.4E-06 40.9 6.5 47 54-100 21-67 (72)
60 2oto_A M protein; helical coil 94.3 2.6 8.9E-05 37.2 20.2 11 52-62 29-39 (155)
61 2e7s_A RAB guanine nucleotide 94.2 0.22 7.6E-06 43.5 9.2 18 46-63 9-26 (135)
62 1m1j_B Fibrinogen beta chain; 94.2 0.81 2.8E-05 47.7 15.0 11 171-181 181-191 (464)
63 2v66_B Nuclear distribution pr 94.1 2.3 7.9E-05 35.9 17.5 65 116-180 35-99 (111)
64 2jee_A YIIU; FTSZ, septum, coi 93.9 1.4 4.6E-05 35.3 12.3 24 126-149 23-46 (81)
65 2eqb_B RAB guanine nucleotide 93.7 2.3 7.8E-05 35.1 13.6 55 43-97 10-64 (97)
66 3ol1_A Vimentin; structural ge 93.3 2.5 8.6E-05 35.9 14.1 61 123-183 41-101 (119)
67 3oja_A Leucine-rich immune mol 93.3 4 0.00014 41.9 18.5 58 142-199 426-483 (487)
68 3a7p_A Autophagy protein 16; c 93.3 0.9 3.1E-05 40.4 11.4 48 46-100 62-109 (152)
69 2e7s_A RAB guanine nucleotide 93.2 0.24 8.3E-06 43.3 7.5 18 42-59 12-29 (135)
70 3oja_A Leucine-rich immune mol 93.1 2.1 7.1E-05 44.0 16.0 22 78-99 372-393 (487)
71 1l8d_A DNA double-strand break 93.1 1.9 6.6E-05 35.6 12.9 8 87-94 10-17 (112)
72 3a7p_A Autophagy protein 16; c 93.1 1.6 5.6E-05 38.8 12.7 57 44-100 67-123 (152)
73 2zqm_A Prefoldin beta subunit 92.6 1.9 6.5E-05 35.7 12.2 35 45-79 6-40 (117)
74 3qh9_A Liprin-beta-2; coiled-c 92.2 0.76 2.6E-05 36.6 8.5 56 41-96 22-77 (81)
75 3q8t_A Beclin-1; autophagy, AT 92.0 4.4 0.00015 33.2 14.8 67 125-191 27-93 (96)
76 3mq9_A Bone marrow stromal ant 91.9 3.9 0.00013 41.8 16.0 23 166-188 444-466 (471)
77 3s4r_A Vimentin; alpha-helix, 91.9 3.4 0.00012 33.7 12.4 22 45-66 9-30 (93)
78 2jee_A YIIU; FTSZ, septum, coi 91.8 2.8 9.4E-05 33.5 11.3 24 76-99 9-32 (81)
79 2v66_B Nuclear distribution pr 91.8 5.3 0.00018 33.7 16.1 36 157-192 55-90 (111)
80 3nmd_A CGMP dependent protein 91.7 0.48 1.7E-05 37.1 6.7 42 61-102 21-62 (72)
81 2w83_C C-JUN-amino-terminal ki 91.7 2.1 7.2E-05 33.7 10.3 70 121-190 7-76 (77)
82 3ol1_A Vimentin; structural ge 91.7 5.5 0.00019 33.8 14.0 7 122-128 26-32 (119)
83 3swk_A Vimentin; cytoskeleton, 91.4 2.6 9E-05 33.8 11.1 61 121-181 19-79 (86)
84 3efg_A Protein SLYX homolog; x 91.3 0.6 2E-05 37.1 7.0 52 141-192 11-62 (78)
85 3jsv_C NF-kappa-B essential mo 91.2 1.7 5.7E-05 35.7 9.7 48 116-163 40-87 (94)
86 2oto_A M protein; helical coil 91.2 7.5 0.00026 34.2 20.2 9 50-58 34-42 (155)
87 2no2_A HIP-I, huntingtin-inter 91.1 6 0.0002 33.1 16.5 35 57-91 6-40 (107)
88 1m1j_C Fibrinogen gamma chain; 91.1 2.3 7.7E-05 43.7 13.0 9 120-128 88-96 (409)
89 2xnx_M M protein, M1-BC1; cell 90.9 0.44 1.5E-05 42.0 6.3 50 118-167 61-110 (146)
90 2zqm_A Prefoldin beta subunit 90.8 6 0.00021 32.6 13.5 24 171-194 83-106 (117)
91 1m1j_B Fibrinogen beta chain; 90.8 9.4 0.00032 39.8 17.4 11 175-185 178-188 (464)
92 3mq9_A Bone marrow stromal ant 90.3 12 0.00042 38.0 17.9 36 161-196 432-467 (471)
93 1fxk_A Prefoldin; archaeal pro 90.3 3.8 0.00013 33.3 11.4 30 50-79 6-35 (107)
94 1fxk_C Protein (prefoldin); ar 89.7 6.2 0.00021 33.5 12.8 40 109-148 88-127 (133)
95 2i1j_A Moesin; FERM, coiled-co 89.1 0.54 1.8E-05 50.3 6.7 55 142-196 403-457 (575)
96 3swk_A Vimentin; cytoskeleton, 89.0 4.8 0.00016 32.3 10.8 57 121-177 5-61 (86)
97 3i00_A HIP-I, huntingtin-inter 89.0 2.2 7.6E-05 36.5 9.2 19 81-99 16-34 (120)
98 1m1j_A Fibrinogen alpha subuni 88.7 13 0.00044 38.5 16.0 49 49-97 62-110 (491)
99 1d7m_A Cortexillin I; coiled-c 88.6 8.6 0.00029 31.2 15.4 61 124-184 26-86 (101)
100 3iox_A AGI/II, PA; alpha helix 88.5 13 0.00044 38.9 16.1 40 151-190 66-105 (497)
101 3a7o_A Autophagy protein 16; c 88.1 2.5 8.5E-05 32.8 7.9 44 60-103 19-62 (75)
102 2pms_C Pneumococcal surface pr 87.4 8.1 0.00028 33.2 11.6 25 49-73 10-34 (125)
103 2pms_C Pneumococcal surface pr 87.1 5.1 0.00017 34.5 10.2 20 86-105 12-31 (125)
104 2i1j_A Moesin; FERM, coiled-co 87.1 1.9 6.6E-05 46.0 9.5 10 90-99 338-347 (575)
105 3iv1_A Tumor susceptibility ge 86.9 10 0.00035 30.0 11.5 58 113-170 15-72 (78)
106 1x8y_A Lamin A/C; structural p 86.6 4.3 0.00015 32.5 9.1 20 117-136 36-55 (86)
107 1m1j_A Fibrinogen alpha subuni 86.6 22 0.00075 36.8 16.3 32 151-182 125-156 (491)
108 3cvf_A Homer-3, homer protein 85.8 2.7 9.1E-05 33.5 7.2 52 149-200 4-55 (79)
109 2lw1_A ABC transporter ATP-bin 85.7 5.1 0.00018 32.1 9.1 23 160-182 58-80 (89)
110 1gk4_A Vimentin; intermediate 85.2 12 0.00043 29.5 11.7 44 113-156 30-73 (84)
111 3l4q_C Phosphatidylinositol 3- 84.4 23 0.00079 32.0 14.9 34 63-96 35-68 (170)
112 1x79_B RAB GTPase binding effe 84.3 18 0.00061 30.6 12.8 64 118-184 8-71 (112)
113 3iox_A AGI/II, PA; alpha helix 84.3 28 0.00095 36.4 16.0 68 128-198 39-106 (497)
114 3ghg_C Fibrinogen gamma chain; 84.2 17 0.00059 37.2 14.4 15 123-137 91-105 (411)
115 1m1j_C Fibrinogen gamma chain; 84.0 17 0.00059 37.2 14.3 28 158-185 105-132 (409)
116 3iv1_A Tumor susceptibility ge 83.9 7 0.00024 31.0 8.8 57 43-99 16-72 (78)
117 2nrj_A HBL B protein; enteroto 83.5 23 0.00079 35.2 14.8 65 40-104 118-193 (346)
118 2yko_A LINE-1 ORF1P; RNA-bindi 83.3 1.8 6E-05 41.2 6.1 50 48-97 2-51 (233)
119 2lw1_A ABC transporter ATP-bin 82.8 8.4 0.00029 30.8 9.2 19 78-96 27-45 (89)
120 1d7m_A Cortexillin I; coiled-c 82.6 18 0.00061 29.3 15.4 26 141-166 71-96 (101)
121 3i00_A HIP-I, huntingtin-inter 82.5 19 0.00065 30.7 11.7 11 89-99 17-27 (120)
122 3a7o_A Autophagy protein 16; c 82.4 9.1 0.00031 29.7 8.6 57 49-105 15-71 (75)
123 3htk_A Structural maintenance 82.0 6.7 0.00023 28.8 7.8 23 48-70 8-30 (60)
124 3jsv_C NF-kappa-B essential mo 81.9 11 0.00038 30.8 9.5 12 123-134 23-34 (94)
125 3hhm_B NISH2 P85alpha; PI3KCA, 81.7 43 0.0015 33.8 16.1 55 42-96 123-177 (373)
126 2qyw_A Vesicle transport throu 81.4 13 0.00043 30.6 10.0 56 69-131 45-100 (102)
127 1jcd_A Major outer membrane li 81.2 7.8 0.00027 28.3 7.6 8 117-124 40-47 (52)
128 3trt_A Vimentin; cytoskeleton, 81.1 11 0.00039 29.0 9.2 28 109-136 49-76 (77)
129 1cii_A Colicin IA; bacteriocin 81.1 56 0.0019 34.0 17.6 28 385-412 552-579 (602)
130 4ad8_A DNA repair protein RECN 80.9 55 0.0019 33.8 17.9 49 53-101 187-241 (517)
131 1lwu_C Fibrinogen gamma chain; 80.9 3.2 0.00011 41.4 7.2 47 53-99 6-52 (323)
132 3c9i_A Tail needle protein GP2 80.8 36 0.0012 31.6 16.7 66 111-176 79-144 (242)
133 2ke4_A CDC42-interacting prote 80.4 21 0.00071 29.3 10.9 28 150-177 61-88 (98)
134 4gkw_A Spindle assembly abnorm 79.0 31 0.0011 29.9 22.7 14 87-100 60-73 (167)
135 1go4_E MAD1 (mitotic arrest de 79.0 11 0.00036 31.3 8.6 30 117-146 13-42 (100)
136 3ghg_B Fibrinogen beta chain; 78.5 20 0.00067 37.3 12.4 20 45-64 88-107 (461)
137 3ghg_C Fibrinogen gamma chain; 78.4 27 0.00092 35.8 13.3 7 87-93 59-65 (411)
138 2qih_A Protein USPA1; trimeric 77.6 35 0.0012 29.7 22.0 20 78-97 45-64 (157)
139 1ses_A Seryl-tRNA synthetase; 77.6 18 0.00063 36.9 12.0 32 73-104 28-59 (421)
140 2avr_X Adhesion A; antiparalle 76.0 36 0.0012 29.0 13.8 26 39-64 3-28 (119)
141 2w83_C C-JUN-amino-terminal ki 75.8 25 0.00087 27.6 9.4 22 158-179 51-72 (77)
142 3uux_B Mitochondrial division 75.7 26 0.00089 33.3 11.4 16 55-70 78-93 (242)
143 3mq7_A Bone marrow stromal ant 75.3 37 0.0013 28.8 13.9 30 167-196 73-102 (121)
144 3s4r_A Vimentin; alpha-helix, 75.0 32 0.0011 27.8 13.3 20 81-100 24-43 (93)
145 4hpq_C ATG17, KLTH0D15642P; au 74.8 79 0.0027 32.3 25.2 153 45-212 235-390 (413)
146 1zxa_A CGMP-dependent protein 74.5 3.9 0.00013 31.5 4.5 38 63-100 15-52 (67)
147 1wle_A Seryl-tRNA synthetase; 73.8 44 0.0015 35.0 13.8 29 74-102 71-99 (501)
148 1vcs_A Vesicle transport throu 73.7 9.8 0.00034 31.3 7.1 83 44-135 11-93 (102)
149 3mq7_A Bone marrow stromal ant 72.9 43 0.0015 28.4 14.7 8 122-129 52-59 (121)
150 2k48_A Nucleoprotein; viral pr 72.7 40 0.0014 28.0 10.7 15 111-125 51-65 (107)
151 4etp_A Kinesin-like protein KA 72.6 7.1 0.00024 39.8 7.3 55 46-100 4-58 (403)
152 4emc_A Monopolin complex subun 72.3 7.2 0.00025 35.8 6.4 33 44-76 12-44 (190)
153 3efg_A Protein SLYX homolog; x 71.8 14 0.00047 29.1 7.2 39 149-187 12-50 (78)
154 2zdi_C Prefoldin subunit alpha 71.8 23 0.00078 30.8 9.6 40 52-91 9-51 (151)
155 2l5g_B Putative uncharacterize 71.6 8.5 0.00029 26.9 5.1 26 75-100 11-36 (42)
156 3uux_B Mitochondrial division 71.1 41 0.0014 31.9 11.5 63 127-189 153-215 (242)
157 4emc_A Monopolin complex subun 70.6 28 0.00096 31.9 9.9 24 117-140 14-37 (190)
158 1oef_A Apolipoprotein E; glyco 70.5 3.6 0.00012 25.6 2.8 21 346-366 2-22 (26)
159 1jcd_A Major outer membrane li 70.4 25 0.00085 25.6 7.7 23 160-182 13-35 (52)
160 2oqq_A Transcription factor HY 70.1 17 0.00058 25.3 6.4 28 141-168 7-34 (42)
161 1ik9_A DNA repair protein XRCC 69.6 71 0.0024 29.6 13.3 23 121-143 151-173 (213)
162 3ghg_B Fibrinogen beta chain; 69.3 60 0.0021 33.7 13.3 33 64-96 93-125 (461)
163 1go4_E MAD1 (mitotic arrest de 68.9 25 0.00086 29.0 8.5 30 110-139 13-42 (100)
164 3vp9_A General transcriptional 68.8 9.3 0.00032 31.2 5.7 75 121-198 12-87 (92)
165 1lwu_C Fibrinogen gamma chain; 68.6 9.3 0.00032 37.9 6.9 29 71-99 10-38 (323)
166 3etw_A Adhesin A; antiparallel 67.3 58 0.002 27.7 13.8 24 39-62 3-26 (119)
167 1wle_A Seryl-tRNA synthetase; 67.3 41 0.0014 35.2 11.9 31 170-200 121-151 (501)
168 2yy0_A C-MYC-binding protein; 66.4 3.7 0.00013 30.1 2.6 31 39-69 20-50 (53)
169 4etp_A Kinesin-like protein KA 66.2 7.3 0.00025 39.7 5.8 50 44-93 9-58 (403)
170 2dq0_A Seryl-tRNA synthetase; 65.5 44 0.0015 34.5 11.6 25 75-99 33-57 (455)
171 3etw_A Adhesin A; antiparallel 65.0 64 0.0022 27.4 15.1 26 159-184 76-101 (119)
172 1deb_A APC protein, adenomatou 64.6 32 0.0011 24.9 7.1 46 112-157 6-51 (54)
173 2oqq_A Transcription factor HY 64.5 30 0.001 24.1 6.7 29 146-174 5-33 (42)
174 3hd7_B Syntaxin-1A; membrane p 63.9 61 0.0021 26.7 10.7 54 143-196 20-73 (109)
175 3ajw_A Flagellar FLIJ protein; 63.5 66 0.0023 27.0 17.6 50 119-168 70-119 (150)
176 4h22_A Leucine-rich repeat fli 63.1 64 0.0022 26.7 11.4 53 123-175 23-75 (103)
177 3cve_A Homer protein homolog 1 62.6 52 0.0018 25.5 11.0 29 112-140 10-38 (72)
178 3cvf_A Homer-3, homer protein 62.3 56 0.0019 25.8 9.4 31 110-140 14-44 (79)
179 2b5u_A Colicin E3; high resolu 62.3 1.6E+02 0.0054 30.9 19.1 20 78-97 326-345 (551)
180 2zdi_C Prefoldin subunit alpha 62.1 13 0.00045 32.3 5.9 40 45-84 9-51 (151)
181 2yko_A LINE-1 ORF1P; RNA-bindi 61.8 13 0.00044 35.2 6.1 13 289-301 158-170 (233)
182 3m91_A Proteasome-associated A 61.7 30 0.001 25.1 6.7 14 89-102 11-24 (51)
183 3qne_A Seryl-tRNA synthetase, 61.1 31 0.0011 36.1 9.5 19 135-153 83-101 (485)
184 2nrj_A HBL B protein; enteroto 60.7 33 0.0011 34.1 9.3 12 271-282 317-328 (346)
185 2lf0_A Uncharacterized protein 60.5 14 0.00048 31.4 5.4 24 43-66 8-31 (123)
186 3qne_A Seryl-tRNA synthetase, 60.4 46 0.0016 34.8 10.6 31 170-200 76-106 (485)
187 4h22_A Leucine-rich repeat fli 60.2 72 0.0025 26.4 10.9 23 138-160 31-53 (103)
188 2dq0_A Seryl-tRNA synthetase; 60.1 41 0.0014 34.7 10.2 34 169-202 73-106 (455)
189 3l4q_C Phosphatidylinositol 3- 59.7 99 0.0034 27.8 16.8 24 49-72 14-37 (170)
190 3m0d_C TNF receptor-associated 59.0 55 0.0019 24.6 8.6 23 48-70 9-31 (65)
191 1fxk_C Protein (prefoldin); ar 58.9 79 0.0027 26.4 14.3 26 75-100 3-28 (133)
192 3cl3_D NF-kappa-B essential mo 58.3 59 0.002 28.0 9.0 22 78-99 28-49 (130)
193 3onj_A T-snare VTI1; helix, HA 57.9 73 0.0025 25.7 12.2 62 69-135 30-92 (97)
194 2l5g_B Putative uncharacterize 57.5 16 0.00054 25.5 4.3 25 44-68 8-32 (42)
195 4fi5_A Nucleoprotein; structur 57.3 86 0.0029 26.3 10.4 9 171-179 75-83 (113)
196 3m9b_A Proteasome-associated A 56.7 10 0.00035 36.3 4.5 38 153-190 56-93 (251)
197 1gd2_E Transcription factor PA 56.5 42 0.0014 25.8 7.2 12 147-158 32-43 (70)
198 4fla_A Regulation of nuclear P 56.2 1E+02 0.0036 27.0 11.5 77 101-177 71-147 (152)
199 2c5k_T Syntaxin TLG1, T-snare 56.1 29 0.001 28.1 6.6 50 49-100 14-63 (95)
200 1g6u_A Domain swapped dimer; d 56.0 47 0.0016 22.9 6.8 21 140-160 23-43 (48)
201 2ynz_A General control protein 55.4 38 0.0013 30.0 7.6 52 49-100 3-54 (154)
202 4b6x_A AVRRPS4, avirulence pro 55.2 77 0.0026 25.1 8.8 60 39-100 23-82 (90)
203 4dk0_A Putative MACA; alpha-ha 55.0 58 0.002 31.5 9.9 27 167-193 124-150 (369)
204 2ke4_A CDC42-interacting prote 54.0 86 0.003 25.6 9.2 28 115-142 61-88 (98)
205 2p22_A Suppressor protein STP2 53.8 83 0.0029 28.4 9.8 13 315-327 146-158 (174)
206 3fpp_A Macrolide-specific effl 53.2 63 0.0022 30.9 9.8 16 181-196 130-145 (341)
207 1oef_A Apolipoprotein E; glyco 53.0 11 0.00039 23.3 2.8 22 281-302 3-24 (26)
208 3fpp_A Macrolide-specific effl 53.0 34 0.0011 32.9 7.8 33 164-196 120-152 (341)
209 3k29_A Putative uncharacterize 52.9 1.3E+02 0.0044 27.0 24.1 56 108-163 70-125 (169)
210 4dyl_A Tyrosine-protein kinase 52.5 1.5E+02 0.0052 29.6 12.8 43 170-212 357-399 (406)
211 1gd2_E Transcription factor PA 51.0 82 0.0028 24.2 8.2 14 152-165 30-43 (70)
212 4dk0_A Putative MACA; alpha-ha 50.9 72 0.0025 30.8 9.9 17 43-59 68-84 (369)
213 3hhm_B NISH2 P85alpha; PI3KCA, 50.9 2E+02 0.007 28.7 16.9 29 50-78 124-152 (373)
214 1t2k_D Cyclic-AMP-dependent tr 50.7 38 0.0013 24.9 6.0 27 75-101 24-50 (61)
215 1ses_A Seryl-tRNA synthetase; 50.6 52 0.0018 33.5 9.0 32 169-200 68-99 (421)
216 2yy0_A C-MYC-binding protein; 50.0 15 0.00051 26.8 3.5 32 44-75 18-49 (53)
217 3uun_A Dystrophin; triple heli 50.0 92 0.0031 24.5 15.6 19 149-167 83-101 (119)
218 2wps_A Trimeric autotransporte 50.0 1.1E+02 0.0037 25.3 13.8 19 117-135 59-77 (107)
219 3u06_A Protein claret segregat 49.8 17 0.00057 37.2 5.1 53 48-100 6-58 (412)
220 3mtu_A Tropomyosin alpha-1 cha 49.5 34 0.0011 26.6 5.7 42 47-88 4-52 (75)
221 3lss_A Seryl-tRNA synthetase; 49.4 1E+02 0.0035 32.2 11.0 27 174-200 113-139 (484)
222 3faj_A ORF131, putative unchar 49.3 19 0.00066 30.8 4.5 63 284-346 67-132 (151)
223 2yo3_A General control protein 49.2 97 0.0033 29.8 10.0 42 58-99 215-256 (268)
224 3u06_A Protein claret segregat 48.3 45 0.0015 34.0 8.0 54 43-96 8-61 (412)
225 2xv5_A Lamin-A/C; structural p 47.7 81 0.0028 24.4 7.6 48 43-90 3-50 (74)
226 3tul_A Cell invasion protein S 47.5 89 0.003 27.5 8.6 17 113-129 24-40 (158)
227 1ik9_A DNA repair protein XRCC 47.2 1.8E+02 0.006 26.9 13.5 59 117-181 140-198 (213)
228 2wq1_A General control protein 47.1 37 0.0013 22.4 4.6 23 77-99 4-26 (33)
229 2lf0_A Uncharacterized protein 46.6 43 0.0015 28.4 6.2 47 80-129 10-56 (123)
230 1f5n_A Interferon-induced guan 46.4 2.9E+02 0.01 29.3 18.6 30 131-160 488-517 (592)
231 3iyk_A VP5; icosahedral virus; 46.1 2.8E+02 0.0097 29.0 18.8 24 117-140 147-170 (526)
232 4dzn_A Coiled-coil peptide CC- 45.4 34 0.0012 21.9 4.1 8 50-57 7-14 (33)
233 1jth_B Syntaxin 1A; coiled-coi 45.2 1E+02 0.0034 23.6 10.7 57 140-196 6-62 (77)
234 1hjb_A Ccaat/enhancer binding 45.2 1E+02 0.0035 24.6 8.1 30 158-187 43-72 (87)
235 3s9g_A Protein hexim1; cyclin 45.2 1.3E+02 0.0044 24.8 9.3 48 151-198 37-84 (104)
236 1n7s_B Syntaxin 1A; neuronal s 45.0 94 0.0032 23.2 10.2 57 140-196 8-64 (68)
237 3he5_B Synzip2; heterodimeric 44.6 78 0.0027 22.1 6.7 10 121-130 8-17 (52)
238 1zxa_A CGMP-dependent protein 44.5 30 0.001 26.5 4.6 35 50-84 16-50 (67)
239 3swy_A Cyclic nucleotide-gated 44.5 75 0.0026 22.5 6.3 23 78-100 3-25 (46)
240 3ibp_A Chromosome partition pr 44.4 2.4E+02 0.0081 27.6 12.9 12 201-212 101-112 (302)
241 4fm3_A Uncharacterized hypothe 44.3 1.3E+02 0.0045 24.6 10.7 54 128-181 41-94 (98)
242 3hd7_B Syntaxin-1A; membrane p 43.6 1.3E+02 0.0046 24.6 12.1 57 139-195 23-79 (109)
243 1t3j_A Mitofusin 1; coiled coi 43.2 1.2E+02 0.0042 24.7 8.3 11 87-97 54-64 (96)
244 2ic6_A Nucleocapsid protein; h 43.1 1.2E+02 0.0041 23.8 10.5 14 112-125 22-35 (78)
245 4dnd_A Syntaxin-10, SYN10; str 43.1 1.6E+02 0.0053 25.1 11.6 31 70-100 64-94 (130)
246 1g6u_A Domain swapped dimer; d 43.0 79 0.0027 21.7 6.9 27 73-99 20-46 (48)
247 1j1d_C Troponin I, TNI; THIN f 42.9 61 0.0021 28.0 6.8 24 77-100 83-106 (133)
248 3m9b_A Proteasome-associated A 42.2 24 0.00081 33.8 4.5 43 157-199 53-95 (251)
249 1gl2_B Syntaxin 7; membrane pr 42.0 1E+02 0.0035 22.8 9.0 54 143-196 8-61 (65)
250 4e61_A Protein BIM1; EB1-like 41.9 1.5E+02 0.0051 24.6 10.6 44 113-156 15-58 (106)
251 1t3j_A Mitofusin 1; coiled coi 41.6 1.4E+02 0.0049 24.3 8.7 13 81-93 55-67 (96)
252 2dq3_A Seryl-tRNA synthetase; 40.6 37 0.0013 34.7 6.0 26 75-100 32-57 (425)
253 3b5n_B Protein SSO1; snare com 40.6 1.1E+02 0.0039 22.8 10.7 56 141-196 7-62 (69)
254 3uun_A Dystrophin; triple heli 40.0 1.3E+02 0.0046 23.5 12.6 20 156-175 83-102 (119)
255 1lrz_A FEMA, factor essential 39.9 53 0.0018 33.0 7.1 57 71-136 245-301 (426)
256 2w6a_A ARF GTPase-activating p 39.6 97 0.0033 23.1 6.4 47 44-104 12-58 (63)
257 2ou1_A Apolipoprotein A-II; hi 39.0 16 0.00055 28.3 2.2 28 337-364 39-66 (77)
258 1uix_A RHO-associated kinase; 38.8 1.3E+02 0.0046 23.2 7.7 49 50-98 2-50 (71)
259 1j1d_B Troponin T, TNT; THIN f 38.7 60 0.0021 27.0 5.9 34 66-99 56-89 (106)
260 3ajw_A Flagellar FLIJ protein; 38.1 1.8E+02 0.006 24.3 17.0 23 118-140 76-98 (150)
261 2dq3_A Seryl-tRNA synthetase; 37.8 75 0.0026 32.3 7.8 27 109-135 75-101 (425)
262 3trt_A Vimentin; cytoskeleton, 37.7 1.3E+02 0.0045 22.7 10.5 11 45-55 9-19 (77)
263 4e61_A Protein BIM1; EB1-like 37.6 1.8E+02 0.006 24.2 10.0 33 151-183 25-57 (106)
264 3ljm_A Coil Ser L9C; de novo d 37.1 63 0.0021 20.4 4.3 15 150-164 7-21 (31)
265 1fzc_C Fibrin; blood coagulati 36.7 36 0.0012 33.6 5.0 25 73-97 18-42 (319)
266 1ytz_T Troponin T; muscle, THI 36.1 1E+02 0.0036 25.5 7.0 44 42-99 46-89 (107)
267 1ytz_T Troponin T; muscle, THI 35.3 70 0.0024 26.6 5.8 20 113-132 67-86 (107)
268 4fm3_A Uncharacterized hypothe 35.1 1.8E+02 0.0063 23.7 9.4 67 110-176 30-96 (98)
269 1lrz_A FEMA, factor essential 34.7 91 0.0031 31.3 7.8 25 109-133 247-271 (426)
270 1dh3_A Transcription factor CR 33.9 71 0.0024 23.2 5.0 30 72-101 21-50 (55)
271 3iyk_A VP5; icosahedral virus; 33.8 4.3E+02 0.015 27.6 19.7 20 164-183 188-207 (526)
272 2nps_B Syntaxin 13, vesicle-as 33.6 1.5E+02 0.0051 22.2 10.0 54 143-196 5-58 (71)
273 2y3a_B Phosphatidylinositol 3- 33.5 3.4E+02 0.012 26.3 11.4 20 168-187 121-140 (302)
274 1kd8_A GABH AIV, GCN4 acid bas 33.4 56 0.0019 21.9 3.9 7 91-97 19-25 (36)
275 3uul_A Utrophin; spectrin repe 33.1 1.8E+02 0.006 22.8 14.6 17 149-165 83-99 (118)
276 3swf_A CGMP-gated cation chann 32.8 1.7E+02 0.0059 22.7 8.0 25 78-102 5-29 (74)
277 2wt7_B Transcription factor MA 32.3 2E+02 0.0067 23.2 10.9 23 123-145 21-43 (90)
278 2f1m_A Acriflavine resistance 31.9 2.7E+02 0.0092 25.5 10.2 12 43-54 58-69 (277)
279 1fzc_C Fibrin; blood coagulati 31.8 26 0.00089 34.7 3.1 20 78-97 9-28 (319)
280 1u00_A HSC66, chaperone protei 31.7 3E+02 0.01 25.1 10.7 28 73-100 136-163 (227)
281 1z56_A Ligase interacting fact 31.7 28 0.00096 33.0 3.1 64 40-103 159-230 (246)
282 1j1e_C Troponin I, TNI; THIN f 31.4 1.1E+02 0.0037 27.8 6.8 23 78-100 84-106 (180)
283 3c3f_A Alpha/beta peptide with 31.3 64 0.0022 21.4 3.8 8 151-158 8-15 (34)
284 2z5i_A TM, general control pro 31.3 1.5E+02 0.005 21.3 6.9 21 114-134 10-30 (52)
285 1buu_A Protein (mannose-bindin 31.3 40 0.0014 29.1 3.9 21 41-61 19-39 (168)
286 2wt7_B Transcription factor MA 30.5 2.1E+02 0.0073 23.0 10.9 16 153-168 57-72 (90)
287 1nkp_B MAX protein, MYC proto- 30.4 88 0.003 24.2 5.4 34 113-146 44-77 (83)
288 4dzn_A Coiled-coil peptide CC- 30.3 1.1E+02 0.0037 19.6 4.8 17 123-139 9-25 (33)
289 1f5n_A Interferon-induced guan 30.3 5.2E+02 0.018 27.4 18.0 11 44-54 437-447 (592)
290 3vp9_A General transcriptional 30.0 1.2E+02 0.0042 24.5 6.2 15 121-135 73-87 (92)
291 1sfc_B Protein (syntaxin 1A), 29.4 2E+02 0.0067 22.3 10.7 56 141-196 18-73 (83)
292 1gqe_A Release factor 2, RF2; 29.3 4.5E+02 0.015 26.3 13.3 6 389-394 281-286 (365)
293 1gk6_A Vimentin; intermediate 29.1 1.1E+02 0.0038 22.4 5.5 21 50-70 5-25 (59)
294 2bsg_A Fibritin; viral protein 28.9 1.6E+02 0.0056 30.6 8.5 62 39-100 48-114 (487)
295 4fi5_A Nucleoprotein; structur 28.8 2.6E+02 0.0088 23.4 10.0 20 48-67 25-44 (113)
296 1gk6_A Vimentin; intermediate 28.7 1.7E+02 0.0059 21.3 8.5 22 116-137 7-28 (59)
297 2nps_D Syntaxin-6; vesicle fus 28.1 2.1E+02 0.0071 22.1 8.7 52 46-97 20-71 (82)
298 2nps_D Syntaxin-6; vesicle fus 28.0 2.1E+02 0.0071 22.1 7.8 28 162-189 37-64 (82)
299 2wps_A Trimeric autotransporte 27.9 2.5E+02 0.0087 23.1 13.5 16 151-166 76-91 (107)
300 3rrk_A V-type ATPase 116 kDa s 27.9 4.1E+02 0.014 25.5 13.8 18 148-165 230-247 (357)
301 2p01_A Alpha-2-macroglobulin r 27.9 4.4E+02 0.015 25.9 12.8 30 43-72 131-160 (323)
302 1sjj_A Actinin; 3-helix bundle 27.8 6E+02 0.021 27.4 25.8 36 147-182 446-481 (863)
303 2yo3_A General control protein 27.8 1.5E+02 0.0053 28.4 7.5 43 62-104 212-254 (268)
304 2d4y_A HAP1, flagellar HOOK-as 27.8 1.7E+02 0.0057 29.8 8.5 89 34-135 60-148 (463)
305 3q0x_A Centriole protein; cent 26.9 2.8E+02 0.0097 25.9 9.1 48 144-191 171-218 (228)
306 3d5a_X RF1, peptide chain rele 26.7 4.2E+02 0.014 26.4 10.9 13 55-67 6-18 (354)
307 1x4t_A Hypothetical protein LO 26.4 2.3E+02 0.0078 22.9 7.2 18 87-104 32-49 (92)
308 2q6q_A Spindle POLE BODY compo 26.4 2.2E+02 0.0075 21.8 9.5 16 121-136 8-23 (74)
309 3t97_C Nuclear pore glycoprote 26.4 46 0.0016 25.2 2.9 47 45-91 12-58 (64)
310 4etp_B Spindle POLE BODY-assoc 26.1 2.1E+02 0.0073 28.3 8.4 33 125-157 5-37 (333)
311 3r6n_A Desmoplakin; spectrin r 26.0 5.4E+02 0.018 26.2 20.3 87 112-198 168-268 (450)
312 3gwk_C SAG1039, putative uncha 25.4 2.3E+02 0.0078 21.7 13.3 40 149-188 53-92 (98)
313 3d2f_A Heat shock protein homo 25.1 3.5E+02 0.012 29.0 10.8 26 72-97 543-568 (675)
314 2l5g_A GPS2 protein, G protein 24.7 1.2E+02 0.0041 20.5 4.3 12 124-135 16-27 (38)
315 1avy_A Fibritin, gpwac M; bact 24.5 1.1E+02 0.0036 23.7 4.6 16 85-100 27-42 (74)
316 2bni_A General control protein 24.2 85 0.0029 20.8 3.5 17 149-165 6-22 (34)
317 2r2v_A GCN4 leucine zipper; co 24.1 1.2E+02 0.0043 20.0 4.2 17 149-165 6-22 (34)
318 4etp_B Spindle POLE BODY-assoc 23.9 1.3E+02 0.0046 29.7 6.4 58 39-96 4-61 (333)
319 2y3a_B Phosphatidylinositol 3- 23.8 5E+02 0.017 25.1 11.2 23 75-97 48-70 (302)
320 3d5a_X RF1, peptide chain rele 23.4 2.4E+02 0.0081 28.2 8.3 15 172-186 76-90 (354)
321 2wt7_A Proto-oncogene protein 23.3 2.2E+02 0.0076 20.8 10.5 31 154-184 26-56 (63)
322 3gn4_A Myosin-VI; unconvention 23.1 85 0.0029 27.6 4.4 45 60-104 73-117 (148)
323 1nlw_A MAD protein, MAX dimeri 23.0 1.7E+02 0.0058 22.7 5.8 32 113-144 44-75 (80)
324 3i2w_A Syndapin, LD46328P; EFC 22.8 4.5E+02 0.015 24.3 10.0 32 154-185 191-222 (290)
325 2xu6_A MDV1 coiled coil; prote 22.8 2.7E+02 0.0091 21.5 9.4 13 117-129 22-34 (72)
326 2ynz_A General control protein 22.8 2.3E+02 0.008 24.9 7.1 44 56-99 3-46 (154)
327 1gl2_D Syntaxin 8, vesicle tra 22.5 2.3E+02 0.0078 20.7 7.6 34 46-79 10-43 (65)
328 1oeg_A Apolipoprotein E; siali 22.5 34 0.0012 21.5 1.2 16 349-364 1-16 (26)
329 3n1e_A Vacuolar protein sortin 22.4 2.6E+02 0.0089 24.2 7.4 71 259-331 21-98 (141)
330 2kho_A Heat shock protein 70; 22.2 2.9E+02 0.0099 29.0 9.3 30 74-103 528-557 (605)
331 1zme_C Proline utilization tra 22.0 85 0.0029 22.8 3.7 27 44-70 43-69 (70)
332 3m0d_C TNF receptor-associated 21.9 2.5E+02 0.0085 20.8 9.1 15 86-100 5-19 (65)
333 3fhn_A Protein transport prote 21.8 98 0.0033 33.9 5.5 29 45-73 10-38 (706)
334 3s9g_A Protein hexim1; cyclin 21.6 3.4E+02 0.011 22.3 9.7 23 172-194 65-87 (104)
335 2qih_A Protein USPA1; trimeric 21.6 4E+02 0.014 23.1 21.3 15 78-92 52-66 (157)
336 1a93_B MAX protein, coiled coi 21.6 1.5E+02 0.005 19.7 4.2 21 167-187 9-29 (34)
337 1nkp_A C-MYC, MYC proto-oncoge 21.5 2.5E+02 0.0085 22.1 6.6 32 113-144 49-80 (88)
338 4abx_A DNA repair protein RECN 21.1 4.1E+02 0.014 23.1 12.6 64 114-177 92-162 (175)
339 1pl5_A Regulatory protein SIR4 20.9 3.6E+02 0.012 22.4 9.8 40 58-97 66-105 (142)
340 2aze_A Transcription factor DP 20.8 1.5E+02 0.005 26.3 5.5 33 68-100 7-39 (155)
341 4b4t_K 26S protease regulatory 20.5 1.4E+02 0.0047 30.4 6.1 23 312-334 241-263 (428)
342 1hs7_A Syntaxin VAM3; UP-and-D 20.5 3.4E+02 0.012 21.9 9.8 10 81-90 11-20 (97)
343 2aze_A Transcription factor DP 20.2 2.8E+02 0.0095 24.5 7.1 27 165-191 19-45 (155)
No 1
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=99.16 E-value=3.2e-11 Score=116.56 Aligned_cols=117 Identities=17% Similarity=0.228 Sum_probs=107.0
Q ss_pred cchHHHHHHHHHHHHHccccccchHHHHHhhhhhhHHhHHHhhhcccchhHHHHhhHHHHHHHHhhhhcchhHHhhhhhc
Q 013359 235 PAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVV 314 (444)
Q Consensus 235 p~~~~~~~k~~~~~~~~~~w~~p~~~~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~~~~r~~~~p~~~~~~~~~ 314 (444)
|+++++..+....++. ++.++.|++.+ ++.++..||+++++++.|+.+.+|+.+..|++.+++.+
T Consensus 121 P~~eel~~~~~~~~ee-----------l~~~L~p~~ee----lr~kl~~~veelk~~l~P~~ee~r~kl~~~~~el~~~l 185 (243)
T 2a01_A 121 PLRAELQEGARQKLHE-----------LQEKLSPLGEE----MRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENG 185 (243)
T ss_dssp HHHHHHHHHHHHHHHH-----------HCCSCCSSTHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHH-----------HHHHHHhHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 5566777777776666 88899999888 89999999999999999999999999999999999999
Q ss_pred chhHHHHhhhhhhHHHHHHhhcCcchHhHHHhhcccHHHHHHHHHHHHHHHH
Q 013359 315 DPYFQEAKKFSKPYIDQVATVAKPHVDNVRVALKPYTKKVVRAYGKFLKSAT 366 (444)
Q Consensus 315 ~Py~~e~k~~~~py~~~a~~~~~p~~~~~~~~~~Py~~~~~~~~~~~~~~a~ 366 (444)
.||++++++.+.|++++++....||.+.++..+.||++.++..+..+++..+
T Consensus 186 ~p~~~e~~~kl~~~~e~lr~~l~p~~e~lk~~l~p~~e~~~~~l~~~~e~~~ 237 (243)
T 2a01_A 186 GARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYT 237 (243)
T ss_dssp HHTTTSSSCCHHHHHHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998886654
No 2
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=98.82 E-value=7.6e-07 Score=87.36 Aligned_cols=16 Identities=19% Similarity=0.040 Sum_probs=6.9
Q ss_pred cchHHHHHHHHHHHHH
Q 013359 235 PAMDVAIQKALEKKAQ 250 (444)
Q Consensus 235 p~~~~~~~k~~~~~~~ 250 (444)
|..+++..+..+.++.
T Consensus 121 Py~eelr~k~~~~lee 136 (273)
T 3s84_A 121 PYADEFKVKIDQTVEE 136 (273)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 3
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=98.81 E-value=1.4e-08 Score=99.80 Aligned_cols=124 Identities=12% Similarity=0.262 Sum_probs=56.3
Q ss_pred CcchHHHHHHHHHHHHHccccccchHH-----------HHHhhhhhhHHhHHHhhhcccchhHHHHhhHHHHHHHHhhhh
Q 013359 234 KPAMDVAIQKALEKKAQAGKWVQPHVE-----------TIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTA 302 (444)
Q Consensus 234 ~p~~~~~~~k~~~~~~~~~~w~~p~~~-----------~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~~~~r~~ 302 (444)
.|..+++..+....++....-+.|+.. .++.++.|++.+ ++..+..||++++..+.|+.+.+|+.
T Consensus 54 ~Py~~el~~~~~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L~p~~ee----lr~kl~~~veelk~~L~Py~eelr~k 129 (273)
T 3s84_A 54 EPYADQLRTQVNTQAEQLRRQLTPYAQRMERVLRENADSLQASLRPHADE----LKAKIDQNVEELKGRLTPYADEFKVK 129 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHhHhHHHHHHHH
Confidence 466666666666666664433333222 222222333332 33333333333333333333333333
Q ss_pred cchhHHhhhhhcchhHHHHhhhhhhHHHHHHhhcCcchHhHHHhhcccHHHHHHHHHHH
Q 013359 303 VTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVAKPHVDNVRVALKPYTKKVVRAYGKF 361 (444)
Q Consensus 303 ~~p~~~~~~~~~~Py~~e~k~~~~py~~~a~~~~~p~~~~~~~~~~Py~~~~~~~~~~~ 361 (444)
++.|++.+++.+.||+++++..+..+++..+.-.+++.+.+++.+.|+++.++..+.+|
T Consensus 130 ~~~~leeLr~~l~P~ae~~~~kl~~~~e~L~~ql~~~a~~L~~~l~~~~eeLr~~L~p~ 188 (273)
T 3s84_A 130 IDQTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPL 188 (273)
T ss_dssp HHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444333444444555555666666666666666
No 4
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=98.76 E-value=7e-09 Score=100.11 Aligned_cols=117 Identities=17% Similarity=0.209 Sum_probs=70.1
Q ss_pred cchHHHHHHHHHHHHHccccccchHHHHHhhhhhhHHhHHHhhhcccchhHHHHhhHHHHHHHHhhhhcchhHHhhhhhc
Q 013359 235 PAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVV 314 (444)
Q Consensus 235 p~~~~~~~k~~~~~~~~~~w~~p~~~~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~~~~r~~~~p~~~~~~~~~ 314 (444)
|..+++..+....++. ++.++.|++.+ +++.+..|++++++++.|+.+.+|+.+..+|+.+++.+
T Consensus 99 Py~~el~~~~~~~~ee-----------lr~~L~P~~ee----l~~~~~~~~eel~~~L~p~~eelr~kl~~~veelk~~l 163 (243)
T 2a01_A 99 PYLDDFQKKWQEEMEL-----------YRQKVEPLRAE----LQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHL 163 (243)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHTTHHHHHHH----HHHHHHHHHHHHCCSCCSSTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHH-----------HHHHHHHHHHH----HHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5566888888887777 55555555554 44555555555555555555555555555555555555
Q ss_pred chhHHHHhhhhhhHHHHHHh-----------hcCcchHhHHHhhcccHHHHHHHHHHHHHHHH
Q 013359 315 DPYFQEAKKFSKPYIDQVAT-----------VAKPHVDNVRVALKPYTKKVVRAYGKFLKSAT 366 (444)
Q Consensus 315 ~Py~~e~k~~~~py~~~a~~-----------~~~p~~~~~~~~~~Py~~~~~~~~~~~~~~a~ 366 (444)
.||+++++..+...+++.+. -..|+++.++..+.||++.++..+.++++...
T Consensus 164 ~P~~ee~r~kl~~~~~el~~~l~p~~~e~~~kl~~~~e~lr~~l~p~~e~lk~~l~p~~e~~~ 226 (243)
T 2a01_A 164 APYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFK 226 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHHHHHHHHHSSSCSHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHH
Confidence 55555555555555555555 55555777777777777777777777755443
No 5
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=98.67 E-value=1.3e-07 Score=88.27 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=49.0
Q ss_pred hHHHHHhhhhhhHHhHHHhhhcccchhHHHHhhHHHHHHHHhhhhcchhHHhhhhhcchhHHHHhhhhhhHHHHHHhhcC
Q 013359 258 HVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVAK 337 (444)
Q Consensus 258 ~~~~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~~~~r~~~~p~~~~~~~~~~Py~~e~k~~~~py~~~a~~~~~ 337 (444)
+|+.++.++.|+..+ ++..+.+|+++++.++.|+.+.+|+.+..+++.++..+.||+++++..+.+.++.++....
T Consensus 107 dlEelr~kL~P~~eE----L~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~P~~eelk~~l~~~veel~~~L~ 182 (191)
T 1nfn_A 107 DMEDVCGRLVQYRGE----VQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLG 182 (191)
T ss_dssp HHHHHHHHHHHHHHH----HHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------------------
T ss_pred HHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344488888888888 8888888888888888888888888888888888888888888888888777776666666
Q ss_pred cchHhHHH
Q 013359 338 PHVDNVRV 345 (444)
Q Consensus 338 p~~~~~~~ 345 (444)
||++.+++
T Consensus 183 P~~e~~r~ 190 (191)
T 1nfn_A 183 PLVEQGRV 190 (191)
T ss_dssp --------
T ss_pred hHHHHHhc
Confidence 66555543
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.66 E-value=4.4e-06 Score=80.95 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLN 106 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~ 106 (444)
+..++..+..++..++..+..++..+.....++..++..+..++..|.++...|...+.++..+
T Consensus 23 l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 23 LEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI 86 (256)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3445555566666666666666666666666666666666666666666666666666555443
No 7
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=98.66 E-value=6.2e-08 Score=91.90 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=62.8
Q ss_pred CcchHHHHHHHHHHHHHccccccchHHHHHhhhhhhHHhHHHhhhcccchhHHHHhhHHHHHHHHhhhhcchhHHhhhhh
Q 013359 234 KPAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEV 313 (444)
Q Consensus 234 ~p~~~~~~~k~~~~~~~~~~w~~p~~~~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~~~~r~~~~p~~~~~~~~ 313 (444)
.|.++++..+..+.++. ++.++.|++.+ +++.+..+++++++++.|+.+.+|+.+..|++.+++.
T Consensus 97 ~py~~el~~~~~~~~e~-----------lr~~L~Py~~e----l~~~~~~~~e~Lr~~L~p~~e~lr~kl~~~~e~lk~~ 161 (216)
T 2lem_A 97 QPYLDEFQKKWKEDVEL-----------YRQKASPQGAE----LQESARQKLQELQGRLSPVAEEFRDRMRTHVDSLRTQ 161 (216)
T ss_dssp TTTCCHHHHHHHHHHHH-----------HHHHTSCHHHH----HHHHHHCSCCSSCCSCSTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHH-----------HHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777776666666 55555555555 5555555555555555665555666666666666666
Q ss_pred cchhHHHHhhhhhhHHHHHHhhcCcchHhHHHhhcccHHHHHHHHHHH
Q 013359 314 VDPYFQEAKKFSKPYIDQVATVAKPHVDNVRVALKPYTKKVVRAYGKF 361 (444)
Q Consensus 314 ~~Py~~e~k~~~~py~~~a~~~~~p~~~~~~~~~~Py~~~~~~~~~~~ 361 (444)
+.||+++++..+...+++.+.. ||++.+++.+.|+++.++..+.||
T Consensus 162 l~P~~ee~~~kl~~~leeL~~~--p~~~e~~~ki~~~~e~Lr~~l~P~ 207 (216)
T 2lem_A 162 LAPHSEQMRESLAQRLAELKSN--PTLNEYHSSAKSHLKSLGEKARPA 207 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCSSSHHHHHHHTSCTT
T ss_pred hHhhHHHHHHHHHHHHHHHhCC--cchHHHHHHHHHHHHHHHHHhhhh
Confidence 6666666666666666655554 544444444444444444444443
No 8
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.64 E-value=1.5e-05 Score=74.28 Aligned_cols=117 Identities=16% Similarity=0.230 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe 122 (444)
++..+..++.++..+...+.++..++......+...+..+......+..+...+..+...+... ...+..+..++..++
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 82 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDA-QEKLELAEKKATDAE 82 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3444444555555555555555555444444444444444444444444444444444333322 222333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (444)
Q Consensus 123 ~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kv 160 (444)
.++..+...+..+..++..+......+...+..+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 120 (284)
T 1c1g_A 83 ADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333333333333333333333333333333
No 9
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=98.62 E-value=1.1e-07 Score=88.72 Aligned_cols=112 Identities=6% Similarity=0.063 Sum_probs=66.2
Q ss_pred ccccccchHHHHHhhhhhhHHhHHHhhhcccchhHHHHhhHHHHHHHHhhhhcchhHHhhhhhcchhHHHHhhhhhhHHH
Q 013359 251 AGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYID 330 (444)
Q Consensus 251 ~~~w~~p~~~~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~~~~r~~~~p~~~~~~~~~~Py~~e~k~~~~py~~ 330 (444)
...=+.|+.+.+..++.+.+.+ ++..+.-+++++++++.|+.+.+++.+.+|++.++..+.||+.++++.+...++
T Consensus 78 l~~qL~P~~~e~~~~l~~~~e~----lr~~l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~e 153 (191)
T 1nfn_A 78 LEEQLTPVAEETRARLSKELQA----AQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDAD 153 (191)
T ss_dssp HTTC----------CHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3444667777777777777777 777778888999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcchHhHHHhhcccHHHHHHHHHHHHHHHH
Q 013359 331 QVATVAKPHVDNVRVALKPYTKKVVRAYGKFLKSAT 366 (444)
Q Consensus 331 ~a~~~~~p~~~~~~~~~~Py~~~~~~~~~~~~~~a~ 366 (444)
+.+....||++.+++.+..+++.++..+.||++...
T Consensus 154 eLr~~l~P~~eelk~~l~~~veel~~~L~P~~e~~r 189 (191)
T 1nfn_A 154 DLQKRLAVYQAGAREGAERGLSAIRERLGPLVEQGR 189 (191)
T ss_dssp HHHHHHHHHTC-------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHh
Confidence 999999999999888888888888888888876543
No 10
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.61 E-value=2.4e-05 Score=72.79 Aligned_cols=111 Identities=16% Similarity=0.244 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK 123 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~ 123 (444)
..+++.+...+..++.++..+...+......+..+...+......+..+...+..++...... ...+..++.++..+..
T Consensus 12 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 90 (284)
T 1c1g_A 12 KLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELA-EKKATDAEADVASLNR 90 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 344444445555554444444444444444444444444444444444444444444333322 2333333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISD 155 (444)
Q Consensus 124 qIe~LkkelE~~~~e~~~LEae~~elEkkleE 155 (444)
++..+..++..+..++..+......++..+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (284)
T 1c1g_A 91 RIQLFEEELDRAQERLATALQKLEEAEKAADE 122 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333333333333333333333333333
No 11
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=98.55 E-value=8.8e-08 Score=90.86 Aligned_cols=63 Identities=17% Similarity=0.385 Sum_probs=27.1
Q ss_pred HHhhhhhhHHhHHHhhhcccchhHHHHhhHHHHHHHHhhhhcchhHHhhhhhcchhHHHHhhhhhhHHH
Q 013359 262 IKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYID 330 (444)
Q Consensus 262 ~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~~~~r~~~~p~~~~~~~~~~Py~~e~k~~~~py~~ 330 (444)
++.++.|++.+ ++..+..||+.+++.+.|+.+.+|+.+..|++.+++. ||+.+++....|+++
T Consensus 136 Lr~~L~p~~e~----lr~kl~~~~e~lk~~l~P~~ee~~~kl~~~leeL~~~--p~~~e~~~ki~~~~e 198 (216)
T 2lem_A 136 LQGRLSPVAEE----FRDRMRTHVDSLRTQLAPHSEQMRESLAQRLAELKSN--PTLNEYHSSAKSHLK 198 (216)
T ss_dssp SCCSCSTHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCSSSHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhCC--cchHHHHHHHHHHHH
Confidence 34444444444 4444444444444444444444444444444444443 444444444433333
No 12
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=98.53 E-value=1.5e-07 Score=87.08 Aligned_cols=85 Identities=8% Similarity=0.138 Sum_probs=42.6
Q ss_pred hhcccchhHHHHhhHHHHHHHHhhhhcchhHHhhhhhcchhHHHHhhhhhhHHHHHHhhcCcchHhHHHhhcccHHHHHH
Q 013359 277 FTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVAKPHVDNVRVALKPYTKKVVR 356 (444)
Q Consensus 277 ~~~~~~p~ve~~k~k~~p~~~~~r~~~~p~~~~~~~~~~Py~~e~k~~~~py~~~a~~~~~p~~~~~~~~~~Py~~~~~~ 356 (444)
+++.+..++++++.++.|+....+..+..|+..++..+.||+.++++.+..-+++.+....||++.+++.+..+++.++.
T Consensus 83 Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~ 162 (185)
T 3r2p_A 83 LRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRT 162 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555555555555555555555555555444444444444455555555555555555555
Q ss_pred HHHHH
Q 013359 357 AYGKF 361 (444)
Q Consensus 357 ~~~~~ 361 (444)
.+.||
T Consensus 163 ~l~Py 167 (185)
T 3r2p_A 163 HLAPY 167 (185)
T ss_dssp HHHHH
T ss_pred Hhhhh
Confidence 55444
No 13
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=98.52 E-value=1.4e-07 Score=87.39 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=66.3
Q ss_pred cchHHHHHHHHHHHHHccccccchHHHHHhhhhhhHHhHHHhhhcccchhHHHHhhHHHHHHHHhhhhcchhHHhhhhhc
Q 013359 235 PAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVV 314 (444)
Q Consensus 235 p~~~~~~~k~~~~~~~~~~w~~p~~~~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~~~~r~~~~p~~~~~~~~~ 314 (444)
|..+++..+-....+. ++.++..-+++ ++..+.||++.+++++-+-.+.+|..+.||+..+++.+
T Consensus 67 p~~~e~~~~l~~~~~~-----------Lr~~l~kdlee----~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~ 131 (185)
T 3r2p_A 67 PVTQEFWDNLEKETEG-----------LRQEMSKDLEE----VKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGA 131 (185)
T ss_dssp SCCHHHHHHHHHHHHH-----------HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH-----------HHHHHhccHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444444 33333333333 55555555555555555555555555555555555555
Q ss_pred chhHHHHhhhhhhHHHHHHhhcCcchHhHHHhhcccHHHHHHHHHHHH
Q 013359 315 DPYFQEAKKFSKPYIDQVATVAKPHVDNVRVALKPYTKKVVRAYGKFL 362 (444)
Q Consensus 315 ~Py~~e~k~~~~py~~~a~~~~~p~~~~~~~~~~Py~~~~~~~~~~~~ 362 (444)
...+++-+..+.||.++.++....++|.+++.+.||++.++..+..-+
T Consensus 132 ~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~l~Py~ee~k~kl~~~l 179 (185)
T 3r2p_A 132 RQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARL 179 (185)
T ss_dssp HHHHTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 555555555555666666666667777777777777777777766544
No 14
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=98.41 E-value=1.6e-07 Score=85.77 Aligned_cols=106 Identities=10% Similarity=0.086 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHccccccchHHHHHhhhhhhHHhHHHhhhcccchhHHHHhhHHHHHHHHhhhhcchhHHhhhhhcchhH
Q 013359 239 VAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYF 318 (444)
Q Consensus 239 ~~~~k~~~~~~~~~~w~~p~~~~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~~~~r~~~~p~~~~~~~~~~Py~ 318 (444)
++..+-+..|+. +-..++.++.++.|+..+ ++..+.-.++.++.++.|..+.+|+.+.||+..++.++.||+
T Consensus 59 el~~~l~~~ld~----l~~~~~~l~~~L~P~t~e----l~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~ 130 (165)
T 1gs9_A 59 ELRALMDETMKE----LKAYKSELEEQLTPVAEE----TRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQST 130 (165)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHTTSCCCCCSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHhccchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444 223466677777777766 556666677778888888888888888888888888888888
Q ss_pred HHHhhhhhhHHHHHHhhcCcchHhHHHhhcccHH
Q 013359 319 QEAKKFSKPYIDQVATVAKPHVDNVRVALKPYTK 352 (444)
Q Consensus 319 ~e~k~~~~py~~~a~~~~~p~~~~~~~~~~Py~~ 352 (444)
.+++..+.||+++.++-...+++.++..+.||++
T Consensus 131 EelR~kl~P~~eeL~~~~~~~~eeLr~kL~p~~e 164 (165)
T 1gs9_A 131 EELRVRLASHLRKLRKRLLRDADDLQKRLAVYQA 164 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcc
Confidence 8888888888888888888888888888888754
No 15
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=98.33 E-value=8.8e-07 Score=88.27 Aligned_cols=114 Identities=8% Similarity=0.104 Sum_probs=86.4
Q ss_pred cchHHHHHHHHHHHHHccccccchHHHHHhhhhhhHHhHHHhhhcccchhHHHHhhHHHHHHHHhhh-------------
Q 013359 235 PAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKT------------- 301 (444)
Q Consensus 235 p~~~~~~~k~~~~~~~~~~w~~p~~~~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~~~~r~------------- 301 (444)
|..+++..+....++. ++.++.|++.+ ++..+..||+++++.+.|+.+..++
T Consensus 147 Py~~EL~~~~~~~~ee-----------Lr~~L~py~ee----Lr~kl~~~veelr~~L~Py~e~~~~~~~~v~~~k~~~L 211 (307)
T 2l7b_A 147 SHLRKLRKRLLRDADD-----------LQKRLAVYQAG----AREGAERGLSAIRERLGPLVEQGRVRAATVGSLAGQPL 211 (307)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHHHHHHHTSC----CSSHHHHHHHHHHHHCSSSCTTTTTHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhhHHH-----------HHHHHhhHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHH
Confidence 5556777777776666 77888888777 7777777777777777776665444
Q ss_pred --hcchhHHhhhhhcchhH--------------HHHhhhhhhHHHHHHhhcCcchHhHHHhhcccHHHHHHHHHHHHH
Q 013359 302 --AVTPHIIRVQEVVDPYF--------------QEAKKFSKPYIDQVATVAKPHVDNVRVALKPYTKKVVRAYGKFLK 363 (444)
Q Consensus 302 --~~~p~~~~~~~~~~Py~--------------~e~k~~~~py~~~a~~~~~p~~~~~~~~~~Py~~~~~~~~~~~~~ 363 (444)
.+.|+++.|++-+.||. ++++..++--.++++....|+++.++..+.||++.++..|.++++
T Consensus 212 ~~ki~~~~e~Lr~~L~p~~~~~~~~l~~l~~q~ee~~~ql~~~aeel~~kl~~~~eeLr~~l~P~~e~lk~~l~~l~E 289 (307)
T 2l7b_A 212 QERAQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKLEEQAQQIRLQAEAAQARLKSRFEPLAEDMQRQWAGQVE 289 (307)
T ss_dssp SSCSCCHHHHHHHHHHHHHHTCSCSSCCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHTTSSC
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44777777777666654 667778888888888889999999999999999998888877654
No 16
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=98.32 E-value=7.6e-07 Score=88.75 Aligned_cols=104 Identities=10% Similarity=0.131 Sum_probs=73.1
Q ss_pred ccchHHHHHhhhhhhHHhHHHhhhcccchhHHHHhhHHHHHHHHhhhhcchhHHhhhhhcchhHHHHhhhhhhHHHHHHh
Q 013359 255 VQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVAT 334 (444)
Q Consensus 255 ~~p~~~~~~~k~~p~~~~~w~~~~~~~~p~ve~~k~k~~p~~~~~r~~~~p~~~~~~~~~~Py~~e~k~~~~py~~~a~~ 334 (444)
+.+.++.++.++.|++.+ +...+.-|++.++.++.|+.+..|+.+..+++.|+..+.||..+.++.+..-++..+.
T Consensus 112 L~~dlEelR~~L~Py~~e----l~~~l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L~py~eeLr~kl~~~veelr~ 187 (307)
T 2l7b_A 112 LGADMEDVCGRLVQYRGE----VQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRE 187 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 446677777777777776 6777777777777777777777777777777777777777777777777777777777
Q ss_pred hcCcchHhHHHhh---------------cccHHHHHHHHHHHH
Q 013359 335 VAKPHVDNVRVAL---------------KPYTKKVVRAYGKFL 362 (444)
Q Consensus 335 ~~~p~~~~~~~~~---------------~Py~~~~~~~~~~~~ 362 (444)
...||.+.++..+ .||++.++..+.++.
T Consensus 188 ~L~Py~e~~~~~~~~v~~~k~~~L~~ki~~~~e~Lr~~L~p~~ 230 (307)
T 2l7b_A 188 RLGPLVEQGRVRAATVGSLAGQPLQERAQAWGERLRARMEEMG 230 (307)
T ss_dssp HCSSSCTTTTTHHHHHHHHHCCCCSSCSCCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 6667666665544 677777777777754
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.31 E-value=7.9e-05 Score=72.07 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176 (444)
Q Consensus 125 Ie~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~e 176 (444)
.+.|.++++.+...+..++.+..++..++..+...++.++..+++.+..+..
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~ 143 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALE 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444433333333
No 18
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.00 E-value=1.6e-05 Score=91.97 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 013359 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERI 89 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I 89 (444)
.+..++..++.++..++..+.+++.++..+..++..+...+......+
T Consensus 861 ~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l 908 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544444444444444444444443333333
No 19
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.98 E-value=1.8e-05 Score=91.66 Aligned_cols=116 Identities=14% Similarity=0.182 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK 123 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~ 123 (444)
..++.+++.++..++..+..++..+.+.+..+..++..+.+....+......+..++...... ..+...++.++.+++.
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l-~~~~~~Le~~l~ele~ 934 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRL-AAKKQELEEILHEMEA 934 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 456677777777777777777666666666666666666666655555555554444333322 2233333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (444)
Q Consensus 124 qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kv 160 (444)
+++.++.++..+..++..++.+...++..+++++..+
T Consensus 935 elee~ee~l~el~~e~~~le~el~~L~~eleele~~l 971 (1184)
T 1i84_S 935 RIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAAR 971 (1184)
T ss_dssp HHHHHHHC-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 20
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.91 E-value=0.0015 Score=60.55 Aligned_cols=149 Identities=18% Similarity=0.174 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 013359 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQI 125 (444)
Q Consensus 46 eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qI 125 (444)
++.+++.+++..+..-.+++.++ +.+|...++.+.++...+..|..+++++..|... ....+...++.|+.++
T Consensus 25 ~~~~le~El~EFqesSrELE~EL---E~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~----~~~e~~~~~~~Lq~el 97 (189)
T 2v71_A 25 SFQEARDELVEFQEGSRELEAEL---EAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH----QYAQSYKQVSVLEDDL 97 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 44444555555544444444442 2244444444444444444444444444433322 2234445577777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhHH
Q 013359 126 DNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKV---AEEEMMRAKFEATSRSKE 201 (444)
Q Consensus 126 e~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~---~Eeel~kak~E~~~~a~e 201 (444)
..|....+.+...+-.+|....++|...--....+++++.+.+..-.++.-++..+.. +..++++++-|...+..+
T Consensus 98 ~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE~rDLk~E 176 (189)
T 2v71_A 98 SQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQE 176 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777666666666666666666555555555555543 223344555555544333
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.90 E-value=0.00027 Score=81.11 Aligned_cols=125 Identities=18% Similarity=0.240 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 54 IRSLESHIDEKTQELKGKDEVVAQKEKAI----QDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (444)
Q Consensus 54 i~~Lesqi~ele~eI~~k~~eIk~~e~~I----~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~Lk 129 (444)
..+|++++.+++..+++.+++..++...+ ...+.++.+|+.+++.++.. +.+...+++++..|+++++.++
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~-----~~e~~~~~~~v~~L~~e~~~l~ 997 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS-----EEEAKNATNRVLSLQEEIAKLR 997 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444444444333 23455566666666555432 3344456677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 130 KESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEE 186 (444)
Q Consensus 130 kelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Ee 186 (444)
++++...++...++.+...+. .+++.++..|++.+..+++++++++..+...++
T Consensus 998 ~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 998 KELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766665555 355566777777777777777777765555544
No 22
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=97.73 E-value=3.1e-05 Score=70.57 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=54.2
Q ss_pred hhHHHHhhHHHHHHHHhhhhcchhHHhhhhhcchhHHHHhhhhhhHHHHHHhhcCcchHhHHHhhcccHHHHHHHHHHH
Q 013359 283 PHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVAKPHVDNVRVALKPYTKKVVRAYGKF 361 (444)
Q Consensus 283 p~ve~~k~k~~p~~~~~r~~~~p~~~~~~~~~~Py~~e~k~~~~py~~~a~~~~~p~~~~~~~~~~Py~~~~~~~~~~~ 361 (444)
.+++.++.++.|+.+.+++.+...++.+++.+.|++++++..+.||.++.+....||++.++..+.||+++.+.....-
T Consensus 73 ~~~~~l~~~L~P~t~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~~ 151 (165)
T 1gs9_A 73 AYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRD 151 (165)
T ss_dssp HHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666666666666666666667777777777777777777777777777777777777777777766554443
No 23
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.68 E-value=0.021 Score=51.28 Aligned_cols=64 Identities=22% Similarity=0.272 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (444)
Q Consensus 125 Ie~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel 188 (444)
-+.++.+|..+...+...+.++...+..+..++..++.++..+...+.+...+...+..+-.++
T Consensus 72 Ed~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el 135 (155)
T 2efr_A 72 EDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKV 135 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455555555555555555555555555544444444444444443333
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.58 E-value=0.0012 Score=70.07 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=15.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 67 ELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 67 eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sL 99 (444)
++.+++.++..++..+...+..++.+..+|+..
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~ 489 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTN 489 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333444444444444444455555555544433
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.55 E-value=0.0012 Score=75.77 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLKKESEKQQ 136 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~LkkelE~~~ 136 (444)
.+++++.+++.+++++.++.+.++
T Consensus 988 ~L~~e~~~l~~~~~~~~ke~~~le 1011 (1080)
T 2dfs_A 988 SLQEEIAKLRKELHQTQTEKKTIE 1011 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433333
No 26
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.50 E-value=0.019 Score=51.53 Aligned_cols=62 Identities=21% Similarity=0.204 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKET 104 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s 104 (444)
+...|+....+....++++.+++.++......++.++..-...+..-..+..+|..|..+..
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLK 87 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLK 87 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666666666666666666666666666666654443
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=97.43 E-value=0.011 Score=51.41 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 148 EAEKKISDLSAKLEKLQKINDEQKSKIR 175 (444)
Q Consensus 148 elEkkleEle~kveeLe~~~eeqekqI~ 175 (444)
+.+....++......++..+.+++.+|+
T Consensus 94 eeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 94 DEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 28
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.39 E-value=0.046 Score=49.55 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 53 KIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 53 ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sL 99 (444)
++.+|+.++.+++..++.=.+.-..+.+...+....++.+...+..|
T Consensus 7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rEL 53 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNREL 53 (168)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333333333334444444444433333
No 29
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=97.32 E-value=0.012 Score=49.09 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 47 L~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
++.++.++..|....+......+.....++..+..-.+.+.+|.+|+.+|..++
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE 57 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 566777777777777777666666666666666666666666666555555443
No 30
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.27 E-value=0.083 Score=47.90 Aligned_cols=122 Identities=13% Similarity=0.175 Sum_probs=60.4
Q ss_pred chHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 013359 42 PLKIELDQLKSKIRSL-------ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKA 114 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~L-------esqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~a 114 (444)
.+..+|++++.++..- .....++...+...+....++...+..+...-..|+.++..||..+..- .......
T Consensus 10 ~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qE-r~~r~q~ 88 (168)
T 3o0z_A 10 QLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAE-RRDRGHD 88 (168)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4667777776666433 2233333333334444444444444444444444444444444333221 1233355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (444)
Q Consensus 115 e~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe 164 (444)
.+.+.+++..|..|..+++...........+...+..++..+++....++
T Consensus 89 se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 89 SEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55666666666666666666665555555555555444444444444433
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.25 E-value=0.0054 Score=65.01 Aligned_cols=61 Identities=7% Similarity=-0.001 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 138 EKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (444)
Q Consensus 138 e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~ 198 (444)
+.+.++.+....++..++.....+.++++..+++.++++.++++..+.++...+..+...+
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 517 RQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444444444444444444444444444433
No 32
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.22 E-value=0.019 Score=72.09 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 59 SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (444)
Q Consensus 59 sqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~ 97 (444)
+++.+...++++...++..++..+++++.+-.++-.+|.
T Consensus 1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~ 1965 (3245)
T 3vkg_A 1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMV 1965 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666666666665555555543
No 33
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.17 E-value=0.15 Score=47.21 Aligned_cols=142 Identities=18% Similarity=0.118 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQ----KEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARAD 119 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~----~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~ 119 (444)
..++.--+....++..+..+++.++++..+.=++ ++..|...++.+.+|++++..+....... -.+.+..-.
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~----k~K~~~~~~ 84 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEAL----KEKLEHQYA 84 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 4445444554444555555555554444444333 34555555666666666555554333222 112233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMM 189 (444)
Q Consensus 120 eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~ 189 (444)
+.+.++..|++++..+......+..++-++|..-.+++.........++.++.++...-.++.-++.++.
T Consensus 85 e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 85 QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444466667666666666666666666666665556655555555555555555555555555555554
No 34
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=97.15 E-value=0.02 Score=47.73 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 47 L~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
++.++.++..|..+.+............++..+..-.+.+..|.+|+.+|..++
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE 57 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 456777777777777776666666666666666666666666666555555443
No 35
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.14 E-value=0.034 Score=69.91 Aligned_cols=63 Identities=13% Similarity=0.248 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEE 186 (444)
Q Consensus 124 qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Ee 186 (444)
++..++++++..+.++.+.++++.+++.+++.++.+.+....+.+.++.+++..+.+++.++.
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~ 2077 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIA 2077 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444555555555555555555444555555555555555444443
No 36
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=97.05 E-value=0.086 Score=45.68 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 144 ARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (444)
Q Consensus 144 ae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq 182 (444)
..+.+++.++.+.+.....|......++..+.+++.+|.
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 37
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=96.21 E-value=0.54 Score=40.83 Aligned_cols=133 Identities=9% Similarity=0.198 Sum_probs=74.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HH
Q 013359 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKE--ALE-AR 145 (444)
Q Consensus 69 ~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~--~LE-ae 145 (444)
++...++.+....+.-.-+-+.+-+.+++.+|+.+.. -++++..+.++.+-+....+.....+.....+.. .+. -+
T Consensus 21 ~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~-HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRK 99 (167)
T 4gkw_A 21 ESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVA-HQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRK 99 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccH-HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHH
Confidence 3333333334444444556667778888888766654 3555555555555555544444444333222221 122 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHh
Q 013359 146 AIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (444)
Q Consensus 146 ~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ei 202 (444)
+.++|..+.+-.+.++.|...+.-+.+.++.-.-..+....--.+++.|-......+
T Consensus 100 LrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl 156 (167)
T 4gkw_A 100 LGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKI 156 (167)
T ss_dssp THHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Confidence 566777777777777777777777777766655555555555556665555444333
No 38
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=96.07 E-value=0.32 Score=40.26 Aligned_cols=10 Identities=10% Similarity=0.381 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 013359 172 SKIRKTERAL 181 (444)
Q Consensus 172 kqI~elE~~L 181 (444)
..+..+.++|
T Consensus 86 ~evasLnRri 95 (101)
T 3u59_A 86 AEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 39
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=96.03 E-value=0.11 Score=44.86 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 013359 86 SERIVSLQKELSS 98 (444)
Q Consensus 86 e~~I~eLq~kI~s 98 (444)
...|+.|+.+|++
T Consensus 42 rr~iq~L~~el~~ 54 (129)
T 3tnu_B 42 NRMIQRLRAEIDN 54 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 40
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.95 E-value=0.25 Score=40.91 Aligned_cols=58 Identities=24% Similarity=0.359 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
+..+++.++.+|.+|+++....+.++..+...+..-...-...+.....++.++++|.
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777666666666666666666666666666666666553
No 41
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.92 E-value=0.11 Score=45.04 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013359 78 KEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 78 ~e~~I~e~e~~I~eLq~kI~sL 99 (444)
....|.+....|+.|+.+|+++
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l 57 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQ 57 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444333
No 42
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.92 E-value=0.17 Score=43.77 Aligned_cols=45 Identities=18% Similarity=0.339 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKI 153 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkl 153 (444)
..+..++.+|.+++..|++|+.+++.+......|+..+.+++...
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~ 73 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRG 73 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 445567778888889999999999988888888888888877643
No 43
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.75 E-value=0.16 Score=44.10 Aligned_cols=45 Identities=27% Similarity=0.342 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKI 153 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkl 153 (444)
..+..++.+|.+++..|++|+.+++.+...+..|+..+.+++...
T Consensus 31 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~ 75 (131)
T 3tnu_A 31 ELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY 75 (131)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 445567778888889999999998888888888888888877643
No 44
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=95.75 E-value=0.27 Score=51.59 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=30.1
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 115 HARAD-ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLE 161 (444)
Q Consensus 115 e~~i~-eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kve 161 (444)
..++. +|+.+|+.|+.+++.+-..+..|+..+.++..+++.|+..|+
T Consensus 108 ynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 108 YNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 677777777777777766666666666666666666655553
No 45
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=95.48 E-value=0.32 Score=49.23 Aligned_cols=41 Identities=15% Similarity=0.270 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK 159 (444)
Q Consensus 119 ~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~k 159 (444)
.+|+.+|.-|+..++.+-..+..|+.-+.++..+++.|+..
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~ 156 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVD 156 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554444444444444433333333333333
No 46
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.47 E-value=0.19 Score=44.19 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
.++-.++.++..|+.++.++..++.++..++.+....+++..+++.+++.++..|+
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444444444444444444444444444444444333
No 47
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=95.42 E-value=0.066 Score=47.63 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 74 VVAQKEKAIQDKSERIVSLQKELS 97 (444)
Q Consensus 74 eIk~~e~~I~e~e~~I~eLq~kI~ 97 (444)
..+.+++.-..-+..|..|..++.
T Consensus 39 ~~k~lE~r~~~deEr~~~lE~qLk 62 (147)
T 2b9c_A 39 GMKVIESRAQKDEEKMEIQEIQLK 62 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccHHHHHHHHHHHH
Confidence 333344443344444444444443
No 48
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.29 E-value=0.41 Score=42.05 Aligned_cols=55 Identities=29% Similarity=0.327 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeL 163 (444)
.+..++..++..|+.+++.+.+++.+++.++..+.-+..++++++.++..++..|
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555544444444444444444433333333333333
No 49
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.15 E-value=1.7 Score=38.86 Aligned_cols=25 Identities=4% Similarity=0.022 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 169 EQKSKIRKTERALKVAEEEMMRAKF 193 (444)
Q Consensus 169 eqekqI~elE~~Lq~~Eeel~kak~ 193 (444)
..+.+...++.++...+..+..++.
T Consensus 112 ~~e~r~~~L~~ql~e~~~~l~~lq~ 136 (154)
T 2ocy_A 112 AIEILNKRLTEQLREKDTLLDTLTL 136 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444433333333333
No 50
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=95.14 E-value=0.34 Score=38.49 Aligned_cols=47 Identities=21% Similarity=0.201 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 146 AIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (444)
Q Consensus 146 ~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak 192 (444)
+..++..+.+.+......+..+..++.+|..++..+..+++.+..+.
T Consensus 22 ~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 22 AEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444444444444444444333
No 51
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=94.93 E-value=0.51 Score=37.49 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTER 179 (444)
Q Consensus 118 i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~ 179 (444)
+..+..+.+......+..+.++...+.+...++..+..++.++..++..++..+.++.....
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444443333333333
No 52
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=94.80 E-value=1.2 Score=45.05 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013359 124 QIDNLKKESEKQQKEKEALEAR 145 (444)
Q Consensus 124 qIe~LkkelE~~~~e~~~LEae 145 (444)
.|..|+..|+++..++..||..
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~ 156 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVD 156 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 53
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=94.80 E-value=0.33 Score=50.98 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (444)
Q Consensus 141 ~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~L 181 (444)
+|+.++..|+.+++..-..+..|+..+++|-.+|+.||-+|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444555555555555555555444
No 54
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=94.78 E-value=1.2 Score=39.41 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 013359 117 RADELEKQIDNL 128 (444)
Q Consensus 117 ~i~eLe~qIe~L 128 (444)
++..|+.++...
T Consensus 53 r~~~lE~qLkea 64 (147)
T 2b9c_A 53 KMEIQEIQLKEA 64 (147)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 55
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=94.58 E-value=0.44 Score=40.15 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156 (444)
Q Consensus 117 ~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEl 156 (444)
+|..|+.|++-.+.+...-....+.+..++.++..++..+
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHH
Confidence 3445555555555555554444444444444444443333
No 56
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=94.50 E-value=0.81 Score=37.96 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013359 78 KEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 78 ~e~~I~e~e~~I~eLq~kI~sL 99 (444)
+...+.....+|..+...+..+
T Consensus 22 L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 22 ITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444444
No 57
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=94.45 E-value=1.7 Score=35.71 Aligned_cols=82 Identities=18% Similarity=0.281 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKK 130 (444)
Q Consensus 51 ~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~Lkk 130 (444)
..+|..+-+.+-.++.++.-.+.-+-.++..|..+.+.|..-+..|+.. ++...+..++++....||.+.-+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaan--------Tr~lQqh~aRlnsqQrQI~ENhk 76 (114)
T 2xzr_A 5 EDKIEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAAN--------TRTLQQHSARLDSQQRQINENHK 76 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHh--------HHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444433322 23333445555555555554444
Q ss_pred HHHHHHHHHH
Q 013359 131 ESEKQQKEKE 140 (444)
Q Consensus 131 elE~~~~e~~ 140 (444)
+......+.+
T Consensus 77 EMKq~aaqsa 86 (114)
T 2xzr_A 77 EMKQIEDKIE 86 (114)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4433333333
No 58
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.42 E-value=2.6 Score=37.62 Aligned_cols=31 Identities=10% Similarity=0.214 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 161 EKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (444)
Q Consensus 161 eeLe~~~eeqekqI~elE~~Lq~~Eeel~ka 191 (444)
..++.++..++.++.+.+..+..++.++..+
T Consensus 111 ~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREKDTLLDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444433
No 59
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=94.40 E-value=0.1 Score=40.95 Aligned_cols=47 Identities=32% Similarity=0.519 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 54 i~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
|.+|+.-+.....+|..+++-|..++..|.+++..|.+|+++++.++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666666666666777777777777777777777777777776553
No 60
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=94.32 E-value=2.6 Score=37.22 Aligned_cols=11 Identities=9% Similarity=0.419 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 013359 52 SKIRSLESHID 62 (444)
Q Consensus 52 ~ki~~Lesqi~ 62 (444)
.+-..|.+...
T Consensus 29 ~eN~~Lk~e~e 39 (155)
T 2oto_A 29 HENKDLKARLE 39 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 61
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.25 E-value=0.22 Score=43.55 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013359 46 ELDQLKSKIRSLESHIDE 63 (444)
Q Consensus 46 eL~~l~~ki~~Lesqi~e 63 (444)
+|..++..+.....++.+
T Consensus 9 ~L~~~r~~l~~~~~~~~~ 26 (135)
T 2e7s_A 9 QLNKSLKTIASQKAAIEN 26 (135)
T ss_dssp TTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444333333
No 62
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=94.24 E-value=0.81 Score=47.73 Aligned_cols=11 Identities=45% Similarity=0.619 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 013359 171 KSKIRKTERAL 181 (444)
Q Consensus 171 ekqI~elE~~L 181 (444)
..+|+.++..+
T Consensus 181 ~~ki~~l~~~~ 191 (464)
T 1m1j_B 181 HKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 63
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=94.14 E-value=2.3 Score=35.93 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERA 180 (444)
Q Consensus 116 ~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~ 180 (444)
..++.|+.++..|....+.+...+-.+|..-.++|...--...-+++++.+....-.+..=++..
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~E 99 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESE 99 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555544444444444444444333333333333
No 64
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.87 E-value=1.4 Score=35.31 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 126 DNLKKESEKQQKEKEALEARAIEA 149 (444)
Q Consensus 126 e~LkkelE~~~~e~~~LEae~~el 149 (444)
..|+-+++.++.+...+..+.+++
T Consensus 23 ~lLqmEieELKekN~~L~~e~~e~ 46 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEVQNA 46 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 65
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.65 E-value=2.3 Score=35.10 Aligned_cols=55 Identities=15% Similarity=0.308 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~ 97 (444)
++.+|+++..++...+.++..+..++..-...-...+......+.++.+|...+=
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLF 64 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555455555555555555555555543
No 66
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.33 E-value=2.5 Score=35.92 Aligned_cols=61 Identities=11% Similarity=0.180 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKV 183 (444)
Q Consensus 123 ~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~ 183 (444)
.+++.++..+++.+..-+.--.....+|..+..+.+.+++..-...+++.+++.+.++|.-
T Consensus 41 leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 41 VERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333332223334444444445555555444445555555555554443
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.32 E-value=4 Score=41.87 Aligned_cols=58 Identities=14% Similarity=0.054 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRS 199 (444)
Q Consensus 142 LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a 199 (444)
++.+...++...+....+++.+.++.+.++..++++..++..+.+.++.+..+..-++
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLA 483 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHH
Confidence 3334444444455555566666666666666666666666666666665555544443
No 68
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=93.29 E-value=0.9 Score=40.41 Aligned_cols=48 Identities=19% Similarity=0.217 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 46 eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
..++....|..|++.+..+ ...|.+++..+.++++.++.+++++.+|+
T Consensus 62 ~~~~~~~~I~~L~~El~~l-------~~ki~dLeeel~eK~K~~e~l~DEl~aLq 109 (152)
T 3a7p_A 62 HDDALLNTLAILQKELKSK-------EQEIRRLKEVIALKNKNTERLNAALISGT 109 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444 44444455555566666666666666665
No 69
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.19 E-value=0.24 Score=43.33 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=9.7
Q ss_pred chHHHHHHHHHHHHHHHH
Q 013359 42 PLKIELDQLKSKIRSLES 59 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Les 59 (444)
..+.+|...+.++.+++.
T Consensus 12 ~~r~~l~~~~~~~~~le~ 29 (135)
T 2e7s_A 12 KSLKTIASQKAAIENYNQ 29 (135)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555554
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.13 E-value=2.1 Score=44.04 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013359 78 KEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 78 ~e~~I~e~e~~I~eLq~kI~sL 99 (444)
++..+........+...++...
T Consensus 372 le~~~~~~~~~~~~~~~~~~~~ 393 (487)
T 3oja_A 372 LDEQVSNGRRAHAELDGTLQQA 393 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHh
Confidence 3333333334444444444333
No 71
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=93.10 E-value=1.9 Score=35.63 Aligned_cols=8 Identities=0% Similarity=0.322 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 013359 87 ERIVSLQK 94 (444)
Q Consensus 87 ~~I~eLq~ 94 (444)
..+.++..
T Consensus 10 ~~~~~~~~ 17 (112)
T 1l8d_A 10 TKKTTIEE 17 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 72
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=93.08 E-value=1.6 Score=38.75 Aligned_cols=57 Identities=21% Similarity=0.207 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
...|..++.++..++.+|..++.++.++...+..+.+++.-+.-+...+++++..++
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544444444444444444333333333333333333333
No 73
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=92.59 E-value=1.9 Score=35.72 Aligned_cols=35 Identities=6% Similarity=0.136 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKE 79 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e 79 (444)
.++.++-.++..++.++..+..++..++.++...+
T Consensus 6 ~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~ 40 (117)
T 2zqm_A 6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAK 40 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444444443
No 74
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=92.25 E-value=0.76 Score=36.60 Aligned_cols=56 Identities=30% Similarity=0.350 Sum_probs=42.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (444)
Q Consensus 41 ~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI 96 (444)
..+..++..|+.++..++++...-+..++.-.++|..+...+..++..|.-|++++
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35777888888888888888888888887777777777777777777777776665
No 75
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=91.99 E-value=4.4 Score=33.19 Aligned_cols=67 Identities=10% Similarity=0.259 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (444)
Q Consensus 125 Ie~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~ka 191 (444)
+..|+++-+.+..++..++.+...++..-...-.......-..-+.+...+.++.++......+.++
T Consensus 27 L~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 27 LEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333444344333333344444444444444444444555555544444444
No 76
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=91.89 E-value=3.9 Score=41.82 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013359 166 INDEQKSKIRKTERALKVAEEEM 188 (444)
Q Consensus 166 ~~eeqekqI~elE~~Lq~~Eeel 188 (444)
++.+++.+|.+++.+|+.++.++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 77
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=91.86 E-value=3.4 Score=33.66 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013359 45 IELDQLKSKIRSLESHIDEKTQ 66 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~ 66 (444)
.++..|+.+++..-.++.-+++
T Consensus 9 e~mq~LNdRlAsyIdKVR~LEq 30 (93)
T 3s4r_A 9 VELQELNDRFANLIDKVRFLEQ 30 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444444333
No 78
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.81 E-value=2.8 Score=33.52 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 76 AQKEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 76 k~~e~~I~e~e~~I~eLq~kI~sL 99 (444)
.+++..|++.=..|+-|+-+|+.|
T Consensus 9 eqLE~KIq~avdtI~lLqmEieEL 32 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEEL 32 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555544444
No 79
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.78 E-value=5.3 Score=33.71 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 157 SAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (444)
Q Consensus 157 e~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak 192 (444)
...+.+|+..+++++..-...-..++..+..++.+-
T Consensus 55 ~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~ai 90 (111)
T 2v66_B 55 HKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAI 90 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333333444444444444444444444333333
No 80
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=91.68 E-value=0.48 Score=37.06 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=25.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013359 61 IDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (444)
Q Consensus 61 i~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK 102 (444)
+.+++..+..++++|.+++..|+++++.|.++.+.|..|+.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666666666555533
No 81
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=91.67 E-value=2.1 Score=33.70 Aligned_cols=70 Identities=23% Similarity=0.266 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (444)
Q Consensus 121 Le~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~k 190 (444)
+-.+++.|-.+...+-..+.+++--.+++=.++.++....+.++.++...+.-...++.++..+++++.+
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466777777777777777777777777778888888888888888888888888888887777777654
No 82
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.67 E-value=5.5 Score=33.78 Aligned_cols=7 Identities=43% Similarity=0.871 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 013359 122 EKQIDNL 128 (444)
Q Consensus 122 e~qIe~L 128 (444)
+.+|+.+
T Consensus 26 R~qid~~ 32 (119)
T 3ol1_A 26 RRQVDQL 32 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 83
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=91.43 E-value=2.6 Score=33.84 Aligned_cols=61 Identities=13% Similarity=0.211 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (444)
Q Consensus 121 Le~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~L 181 (444)
+..+++.++..+++.+..-+.=-....++|..+..+.+.++.+.-...+++.+++.+.+.|
T Consensus 19 l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 19 VEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333332333444444444444444444444444444444444443
No 84
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=91.28 E-value=0.6 Score=37.08 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (444)
Q Consensus 141 ~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak 192 (444)
.+++++.++|.++.-.+..+++|+..+.+++..|+.+..++..+.+.+....
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677788888888888888888888888888888888888777766554443
No 85
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=91.23 E-value=1.7 Score=35.66 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (444)
Q Consensus 116 ~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeL 163 (444)
+++..|+.|++-.+.+...-..+.+.+..++.++...+..+...+..|
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 355556666666665555555555555555555555444444444333
No 86
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=91.15 E-value=7.5 Score=34.21 Aligned_cols=9 Identities=22% Similarity=0.442 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 013359 50 LKSKIRSLE 58 (444)
Q Consensus 50 l~~ki~~Le 58 (444)
|+.+...+.
T Consensus 34 Lk~e~e~l~ 42 (155)
T 2oto_A 34 LKARLENAM 42 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 87
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=91.15 E-value=6 Score=33.09 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 013359 57 LESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVS 91 (444)
Q Consensus 57 Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~e 91 (444)
|-.+..+..+++..-...-.+++..+.+++..|..
T Consensus 6 LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~ 40 (107)
T 2no2_A 6 LLRKNAEVTKQVSMARQAQVDLEREKKELEDSLER 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333333333333333333
No 88
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=91.13 E-value=2.3 Score=43.74 Aligned_cols=9 Identities=11% Similarity=0.176 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 013359 120 ELEKQIDNL 128 (444)
Q Consensus 120 eLe~qIe~L 128 (444)
++..++.++
T Consensus 88 kml~~~~~~ 96 (409)
T 1m1j_C 88 KIIEEIIRY 96 (409)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 333333333
No 89
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=90.85 E-value=0.44 Score=42.03 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIN 167 (444)
Q Consensus 118 i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~ 167 (444)
.+.|++.+..+..+++.....+..+++.+..++..+.+++.....++...
T Consensus 61 ~~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEek 110 (146)
T 2xnx_M 61 ANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEK 110 (146)
T ss_dssp HHHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45566666777777777776666666666666666555555544444433
No 90
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=90.84 E-value=6 Score=32.59 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 171 KSKIRKTERALKVAEEEMMRAKFE 194 (444)
Q Consensus 171 ekqI~elE~~Lq~~Eeel~kak~E 194 (444)
+..|..++.++..++.++..++..
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 91
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=90.82 E-value=9.4 Score=39.78 Aligned_cols=11 Identities=9% Similarity=0.190 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 013359 175 RKTERALKVAE 185 (444)
Q Consensus 175 ~elE~~Lq~~E 185 (444)
+.+..+|+.++
T Consensus 178 ~~l~~ki~~l~ 188 (464)
T 1m1j_B 178 DSLHKKIQKLE 188 (464)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 92
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=90.28 E-value=12 Score=38.02 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 161 EKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 161 eeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
+.|++++...+++|+++|.++..++.+|..+..+..
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 432 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666555555555555554443
No 93
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=90.26 E-value=3.8 Score=33.35 Aligned_cols=30 Identities=3% Similarity=0.119 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 013359 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKE 79 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~~k~~eIk~~e 79 (444)
+-.++..++.++..+.+++..++.++...+
T Consensus 6 ~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~ 35 (107)
T 1fxk_A 6 QLAQFQQLQQQAQAISVQKQTVEMQINETQ 35 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333333333
No 94
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=89.72 E-value=6.2 Score=33.54 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIE 148 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~e 148 (444)
+-+..++.++..++.+++.+++.+..++.++..+...+.+
T Consensus 88 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666665555555555544444433
No 95
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=89.13 E-value=0.54 Score=50.34 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 142 LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
...+...++.++.+.+..+..+....+.....-.+++.++..+++...+++.++.
T Consensus 403 ~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~ 457 (575)
T 2i1j_A 403 EAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALL 457 (575)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555566666666666666666666666666655555555544
No 96
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=89.04 E-value=4.8 Score=32.29 Aligned_cols=57 Identities=14% Similarity=0.314 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKT 177 (444)
Q Consensus 121 Le~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~el 177 (444)
|+.||+.+..+...+..++..+...+.++..+.++--.....++..+..+.+.++..
T Consensus 5 Lr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a 61 (86)
T 3swk_A 5 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334444443333333333333333333444444433333334444444444433333
No 97
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=88.97 E-value=2.2 Score=36.49 Aligned_cols=19 Identities=21% Similarity=0.336 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013359 81 AIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 81 ~I~e~e~~I~eLq~kI~sL 99 (444)
.|..+..+|..|..+++.+
T Consensus 16 ~Ie~Lkreie~lk~ele~l 34 (120)
T 3i00_A 16 LIERLYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 98
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=88.66 E-value=13 Score=38.53 Aligned_cols=49 Identities=10% Similarity=0.266 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (444)
Q Consensus 49 ~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~ 97 (444)
.++..|++|...+.++.+.-.+....+..+-+.+.+...++.+.++.+.
T Consensus 62 dv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~ 110 (491)
T 1m1j_A 62 NYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYG 110 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 3555566666666666555555555555555555555554444444443
No 99
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=88.65 E-value=8.6 Score=31.17 Aligned_cols=61 Identities=25% Similarity=0.229 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (444)
Q Consensus 124 qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~ 184 (444)
|.+.|+.-+..+..+.+.-+.++.+++.++.+.-..++.-.-..-+++.++...+..-..+
T Consensus 26 Qk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDkAiL 86 (101)
T 1d7m_A 26 QKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAIL 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3333333333333333333444444444444443333332222233344444444433333
No 100
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=88.48 E-value=13 Score=38.92 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 151 KKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (444)
Q Consensus 151 kkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~k 190 (444)
..++..+..++..+....+.+.++...++.+...+..+..
T Consensus 66 ~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae 105 (497)
T 3iox_A 66 AKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAE 105 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555554444444443333
No 101
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=88.11 E-value=2.5 Score=32.80 Aligned_cols=44 Identities=23% Similarity=0.242 Sum_probs=28.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 60 HIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (444)
Q Consensus 60 qi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~ 103 (444)
.+..+.+++.+++.+|..++..+.-+++....|.++|-++.-+.
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIEN 62 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIEN 62 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHH
Confidence 44445555566666677777777777777777777776665333
No 102
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=87.38 E-value=8.1 Score=33.22 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHH
Q 013359 49 QLKSKIRSLESHIDEKTQELKGKDE 73 (444)
Q Consensus 49 ~l~~ki~~Lesqi~ele~eI~~k~~ 73 (444)
.+..+++.++.++.++++.+++.+.
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e 34 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDE 34 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcch
Confidence 4566777777777777776666544
No 103
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=87.14 E-value=5.1 Score=34.48 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 013359 86 SERIVSLQKELSSLQKKETL 105 (444)
Q Consensus 86 e~~I~eLq~kI~sLqkK~s~ 105 (444)
+..|++++.++..+++....
T Consensus 12 ~~KvAElekkv~~lek~lk~ 31 (125)
T 2pms_C 12 QAKIAELENQVHRLEQELKE 31 (125)
T ss_dssp HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444433
No 104
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=87.12 E-value=1.9 Score=46.03 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 013359 90 VSLQKELSSL 99 (444)
Q Consensus 90 ~eLq~kI~sL 99 (444)
.+|+..+..+
T Consensus 338 ~~~~~~~~~~ 347 (575)
T 2i1j_A 338 QEYQDRLRQM 347 (575)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333433333
No 105
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=86.89 E-value=10 Score=30.04 Aligned_cols=58 Identities=19% Similarity=0.401 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQ 170 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeq 170 (444)
...+.++....+++.|++.-+.++.-...++.....++.+..++...++.+..+.+++
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666655555555555555555555555555555555555544444
No 106
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=86.64 E-value=4.3 Score=32.53 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013359 117 RADELEKQIDNLKKESEKQQ 136 (444)
Q Consensus 117 ~i~eLe~qIe~LkkelE~~~ 136 (444)
.|..++.++..++.+++.+.
T Consensus 36 ~i~~lE~el~~~r~e~~~ql 55 (86)
T 1x8y_A 36 LLAEKEREMAEMRARMQQQL 55 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 107
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=86.63 E-value=22 Score=36.85 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 151 KKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (444)
Q Consensus 151 kkleEle~kveeLe~~~eeqekqI~elE~~Lq 182 (444)
.++..--..+..|+..++.|-.+|+.||..|.
T Consensus 125 ~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 125 QRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444455544443
No 108
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=85.77 E-value=2.7 Score=33.47 Aligned_cols=52 Identities=25% Similarity=0.333 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 013359 149 AEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSK 200 (444)
Q Consensus 149 lEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ 200 (444)
++..++++..++++++..+.+++.++..++.+++....+-.+++.|......
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e 55 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQ 55 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666666666666666666666654443
No 109
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=85.66 E-value=5.1 Score=32.06 Aligned_cols=23 Identities=4% Similarity=0.020 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013359 160 LEKLQKINDEQKSKIRKTERALK 182 (444)
Q Consensus 160 veeLe~~~eeqekqI~elE~~Lq 182 (444)
+..+...+++.+..++.+..+..
T Consensus 58 ~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 58 TQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 110
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=85.21 E-value=12 Score=29.54 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEl 156 (444)
.++..|..++.++..++.+++.+..+-..|=+-+-.++.++..+
T Consensus 30 ~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatY 73 (84)
T 1gk4_A 30 NYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATY 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34444555555555555554444433333333333333333333
No 111
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=84.41 E-value=23 Score=31.96 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=14.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 63 EKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (444)
Q Consensus 63 ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI 96 (444)
.+-.+....+++|.-+...|+-.+..|.-++.++
T Consensus 35 ~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~ 68 (170)
T 3l4q_C 35 QLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQG 68 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444
No 112
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=84.32 E-value=18 Score=30.55 Aligned_cols=64 Identities=19% Similarity=0.233 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (444)
Q Consensus 118 i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~ 184 (444)
...|+.+...+++++++...+...++.. +..+.++-..++..|......-+..+.++......+
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333 222333333344444444444444444444433333
No 113
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=84.28 E-value=28 Score=36.42 Aligned_cols=68 Identities=22% Similarity=0.183 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (444)
Q Consensus 128 LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~ 198 (444)
++.+...++.+.+++..+-+.. ....+.+++.-++.++..++...+.+.++...+.++.+.+.++.+.
T Consensus 39 ~~a~n~~i~aeNeaikkrNa~a---ka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ 106 (497)
T 3iox_A 39 NNAANAALTAENTAIKKRNADA---KADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAEL 106 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444333333 3455667777888888888888888888888888777777666653
No 114
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=84.25 E-value=17 Score=37.18 Aligned_cols=15 Identities=7% Similarity=0.078 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 013359 123 KQIDNLKKESEKQQK 137 (444)
Q Consensus 123 ~qIe~LkkelE~~~~ 137 (444)
+++.+++..+.....
T Consensus 91 ~~~~~~~~~~~~~~~ 105 (411)
T 3ghg_C 91 EEIMKYEASILTHDS 105 (411)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHH
Confidence 334444333333333
No 115
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=84.01 E-value=17 Score=37.20 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 158 AKLEKLQKINDEQKSKIRKTERALKVAE 185 (444)
Q Consensus 158 ~kveeLe~~~eeqekqI~elE~~Lq~~E 185 (444)
..+..|+..+..++.+|+.++..+..++
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444443
No 116
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=83.94 E-value=7 Score=30.95 Aligned_cols=57 Identities=18% Similarity=0.334 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sL 99 (444)
++..+++.+++++.|..--++++..-..++.-|..++.+-.+.+..|..++.+.+.|
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777666666666555544444444444444444444444444333
No 117
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=83.48 E-value=23 Score=35.23 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=40.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVA-----------QKEKAIQDKSERIVSLQKELSSLQKKET 104 (444)
Q Consensus 40 ~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk-----------~~e~~I~e~e~~I~eLq~kI~sLqkK~s 104 (444)
...+..-|+.|+..+...+...+.+..+|.+....+. .+...+......|..|+.+|+.+++++.
T Consensus 118 ~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 118 GETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777766666666666542 3334444444466666777776666655
No 118
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=83.28 E-value=1.8 Score=41.18 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (444)
Q Consensus 48 ~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~ 97 (444)
+.+++.++.++..|++++..+++..+.....+..|..++..+.+|.+.+.
T Consensus 2 e~lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iR 51 (233)
T 2yko_A 2 ASLRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVK 51 (233)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677777777777777777777777777777777777777777776653
No 119
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=82.78 E-value=8.4 Score=30.78 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013359 78 KEKAIQDKSERIVSLQKEL 96 (444)
Q Consensus 78 ~e~~I~e~e~~I~eLq~kI 96 (444)
++..|..++..|..++.++
T Consensus 27 le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444433
No 120
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=82.59 E-value=18 Score=29.31 Aligned_cols=26 Identities=35% Similarity=0.294 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 141 ALEARAIEAEKKISDLSAKLEKLQKI 166 (444)
Q Consensus 141 ~LEae~~elEkkleEle~kveeLe~~ 166 (444)
.++++++..|+...-++-++.+..+.
T Consensus 71 dLE~RLsKtEKDkAiLELkLaE~~De 96 (101)
T 1d7m_A 71 ELEARLAKTEKDRAILELKLAEAIDE 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhh
Confidence 45555555555544444444444433
No 121
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=82.45 E-value=19 Score=30.65 Aligned_cols=11 Identities=45% Similarity=0.603 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 013359 89 IVSLQKELSSL 99 (444)
Q Consensus 89 I~eLq~kI~sL 99 (444)
|..|..+|+.+
T Consensus 17 Ie~Lkreie~l 27 (120)
T 3i00_A 17 IERLYREISGL 27 (120)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 122
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=82.41 E-value=9.1 Score=29.65 Aligned_cols=57 Identities=26% Similarity=0.317 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013359 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETL 105 (444)
Q Consensus 49 ~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~ 105 (444)
.++..+..|++.+.+.+.+|..+.+.++-+.+..+.++.+|=++.-+=.-||.+...
T Consensus 15 ~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 15 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 344566666666666667777777777777777777777777777666666655544
No 123
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=82.02 E-value=6.7 Score=28.77 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 013359 48 DQLKSKIRSLESHIDEKTQELKG 70 (444)
Q Consensus 48 ~~l~~ki~~Lesqi~ele~eI~~ 70 (444)
..+...+......++.+...+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~ 30 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLK 30 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444433333333333333
No 124
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=81.91 E-value=11 Score=30.81 Aligned_cols=12 Identities=50% Similarity=0.758 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 013359 123 KQIDNLKKESEK 134 (444)
Q Consensus 123 ~qIe~LkkelE~ 134 (444)
.+|+.|+.++..
T Consensus 23 ~~id~lke~~~q 34 (94)
T 3jsv_C 23 ELIDKLKEEAEQ 34 (94)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 125
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=81.73 E-value=43 Score=33.76 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI 96 (444)
.+...+.+..........+-+.+-.+.....++|..+...|+-....|.-++.++
T Consensus 123 ~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~ 177 (373)
T 3hhm_B 123 AVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQC 177 (373)
T ss_dssp GGGC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445444444444444444444444555555555555555555555544
No 126
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=81.41 E-value=13 Score=30.63 Aligned_cols=56 Identities=16% Similarity=0.281 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKE 131 (444)
Q Consensus 69 ~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~Lkke 131 (444)
+++...|.+.+..+.+.+..|..+.-++.++. .......+.++.....++++|+.+
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p-------~s~R~~~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYAP-------LTFRNPMMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56667788888888888888888877776653 122335555666666666665554
No 127
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=81.24 E-value=7.8 Score=28.34 Aligned_cols=8 Identities=13% Similarity=0.206 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 013359 117 RADELEKQ 124 (444)
Q Consensus 117 ~i~eLe~q 124 (444)
+...++.+
T Consensus 40 eA~RAN~R 47 (52)
T 1jcd_A 40 DAARANQR 47 (52)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33333333
No 128
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=81.11 E-value=11 Score=28.98 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 109 EQVDKAHARADELEKQIDNLKKESEKQQ 136 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe~LkkelE~~~ 136 (444)
..+..++.+|.+++.+|++|+-+++.++
T Consensus 49 ~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 49 DALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445566677777777777777776653
No 129
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=81.09 E-value=56 Score=33.99 Aligned_cols=28 Identities=18% Similarity=-0.043 Sum_probs=18.2
Q ss_pred CCchhccchHHHHHHHHHHHHHHHHHHH
Q 013359 385 LTSPLATKELEWFAASALLVLPVIILFR 412 (444)
Q Consensus 385 ~~~~~a~~~~~w~~a~a~~~~p~~~~~~ 412 (444)
+..+.+.--++=|+.|++|.+||-|+.+
T Consensus 552 ~aaG~aASaVaAfaFS~~lGtPLGIlGi 579 (602)
T 1cii_A 552 IIAGNAATALVALVFSILTGSALGIIGY 579 (602)
T ss_dssp TBTTCBHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 4445555555556678889999766655
No 130
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=80.93 E-value=55 Score=33.78 Aligned_cols=49 Identities=20% Similarity=0.214 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHh
Q 013359 53 KIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE------RIVSLQKELSSLQK 101 (444)
Q Consensus 53 ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~------~I~eLq~kI~sLqk 101 (444)
+..++..+.+.+..+..+...++...+.++.+... +..+|..++..+.+
T Consensus 187 ~~~~~~~~~~~l~~~~~~~~~~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~~ 241 (517)
T 4ad8_A 187 AWREAVSRLERLQASQRERARQIDLLAFQVQEISEVSPDPGEEEGLNTELSRLSN 241 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 33344444444444444444445555555555554 55555555555543
No 131
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=80.92 E-value=3.2 Score=41.35 Aligned_cols=47 Identities=11% Similarity=0.144 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 53 KIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 53 ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sL 99 (444)
+...+.+++..++..|...+.+|..++..+...+..|.+|+++|..+
T Consensus 6 ~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 6 TVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444433
No 132
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=80.78 E-value=36 Score=31.62 Aligned_cols=66 Identities=21% Similarity=0.295 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176 (444)
Q Consensus 111 i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~e 176 (444)
+.+-+.+|..++..++.-+.++......+..++.++-..|..+..+..++..++..+...+..|..
T Consensus 79 L~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isa 144 (242)
T 3c9i_A 79 LADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISA 144 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhh
Confidence 345566666777777766666666666666666555555555555555544444444444333333
No 133
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=80.39 E-value=21 Score=29.33 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 150 EKKISDLSAKLEKLQKINDEQKSKIRKT 177 (444)
Q Consensus 150 EkkleEle~kveeLe~~~eeqekqI~el 177 (444)
+.++.+...+++.|+..+-.++.-+.++
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445444444444444444444
No 134
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=79.02 E-value=31 Score=29.87 Aligned_cols=14 Identities=36% Similarity=0.442 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 013359 87 ERIVSLQKELSSLQ 100 (444)
Q Consensus 87 ~~I~eLq~kI~sLq 100 (444)
++|..|..+..++|
T Consensus 60 KEi~~Lrae~~~~Q 73 (167)
T 4gkw_A 60 KEIGKLRAELGTAQ 73 (167)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444433333333
No 135
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=79.00 E-value=11 Score=31.28 Aligned_cols=30 Identities=33% Similarity=0.516 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 117 RADELEKQIDNLKKESEKQQKEKEALEARA 146 (444)
Q Consensus 117 ~i~eLe~qIe~LkkelE~~~~e~~~LEae~ 146 (444)
++..+..+|+.|+.+.+.+.++++.||.++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555544444444443
No 136
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=78.49 E-value=20 Score=37.27 Aligned_cols=20 Identities=5% Similarity=0.287 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013359 45 IELDQLKSKIRSLESHIDEK 64 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~el 64 (444)
.+-..++..|+.|+..++++
T Consensus 88 kye~~V~~dl~~Le~~l~~i 107 (461)
T 3ghg_B 88 QQERPIRNSVDELNNNVEAV 107 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhHHHHHHHHHHHH
Confidence 33333444444444444443
No 137
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=78.40 E-value=27 Score=35.78 Aligned_cols=7 Identities=29% Similarity=0.401 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 013359 87 ERIVSLQ 93 (444)
Q Consensus 87 ~~I~eLq 93 (444)
.-|..++
T Consensus 59 ~~v~~ik 65 (411)
T 3ghg_C 59 QLIKAIQ 65 (411)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 138
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=77.60 E-value=35 Score=29.71 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013359 78 KEKAIQDKSERIVSLQKELS 97 (444)
Q Consensus 78 ~e~~I~e~e~~I~eLq~kI~ 97 (444)
+...|......|.+|...|.
T Consensus 45 n~~~iakNqadI~~L~~dI~ 64 (157)
T 2qih_A 45 NKDGIAKNQADIQLHDKKIT 64 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 33333333333333333333
No 139
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=77.58 E-value=18 Score=36.91 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 73 EVVAQKEKAIQDKSERIVSLQKELSSLQKKET 104 (444)
Q Consensus 73 ~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s 104 (444)
+++.+++..-.+...++.+|+.+...+.+++.
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666665554
No 140
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=76.01 E-value=36 Score=28.96 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=16.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHH
Q 013359 39 DSSPLKIELDQLKSKIRSLESHIDEK 64 (444)
Q Consensus 39 ~~~~l~~eL~~l~~ki~~Lesqi~el 64 (444)
|+..+..++++|.++++.|..+-++.
T Consensus 3 ~a~~V~s~l~~LEaeyq~L~~kE~qr 28 (119)
T 2avr_X 3 DAASLVGELQALDAEYQNLANQEEAR 28 (119)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677788888887776655544
No 141
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=75.80 E-value=25 Score=27.59 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013359 158 AKLEKLQKINDEQKSKIRKTER 179 (444)
Q Consensus 158 ~kveeLe~~~eeqekqI~elE~ 179 (444)
.++..++......+.++.++++
T Consensus 51 ~El~s~~~~~~r~~~ri~elEe 72 (77)
T 2w83_C 51 GELEAVKQAKLKLEEKNRELEE 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 142
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=75.73 E-value=26 Score=33.29 Aligned_cols=16 Identities=6% Similarity=0.144 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhhhh
Q 013359 55 RSLESHIDEKTQELKG 70 (444)
Q Consensus 55 ~~Lesqi~ele~eI~~ 70 (444)
+-.++.+-.+++.|..
T Consensus 78 QGFeAsLPiIne~i~~ 93 (242)
T 3uux_B 78 QGFKSYLPIAELAIEN 93 (242)
T ss_dssp HHHHHHHHHHGGGGC-
T ss_pred hccccccHHHHHHHHh
Confidence 3455666666666654
No 143
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=75.27 E-value=37 Score=28.76 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 167 NDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 167 ~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
+.+++.+|..+++.|++...++.++..+..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 333444444444444444444444444433
No 144
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=74.99 E-value=32 Score=27.83 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013359 81 AIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 81 ~I~e~e~~I~eLq~kI~sLq 100 (444)
.+..++++-..|+.+|..++
T Consensus 24 KVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444443
No 145
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=74.76 E-value=79 Score=32.31 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~q 124 (444)
.-+.-+...-.+|.+-..+++..++..+.-.......+.+++..+..+.+.+..+-..... ..+...+=..+++.
T Consensus 235 elleVv~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~--~~e~l~i~~~i~e~--- 309 (413)
T 4hpq_C 235 NLFEIVERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKLLTELRK--HEEYISVFEGISAL--- 309 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---
T ss_pred HHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHH---
Confidence 4444455555566666666655555555555555555555555555555544444322211 01111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 013359 125 IDNLKKESEKQQKEKEALEARAIEAEKKI---SDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKE 201 (444)
Q Consensus 125 Ie~LkkelE~~~~e~~~LEae~~elEkkl---eEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a~e 201 (444)
+ ...++.+.....+++... .....-...+-.++...+.-...+..-+..+.+++.++..+-...+..
T Consensus 310 l----------~~fk~~~~~~~~~~~~L~~~Y~~f~~aY~~lL~Ev~RRr~~~~~~~~i~~~~~~~L~~l~e~d~~~Re~ 379 (413)
T 4hpq_C 310 I----------QKFKASCLEDIRQTRNLLDFYANFERSYHNLLKEVKRRKETAAKLSQILKSCETQLEQINTADLRERQM 379 (413)
T ss_dssp H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122223333333332222 222223333333444444445555666666677777776666655555
Q ss_pred hhhhhccCCCh
Q 013359 202 LTEVHSAWLPP 212 (444)
Q Consensus 202 i~~~~g~wl~P 212 (444)
=...+|.|||.
T Consensus 380 F~~~~G~yLP~ 390 (413)
T 4hpq_C 380 FLLENGNYLPE 390 (413)
T ss_dssp HHHHSSSSSCG
T ss_pred HHHHhcccCCh
Confidence 56678999997
No 146
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=74.54 E-value=3.9 Score=31.50 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=23.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 63 EKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 63 ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
++...|..+++-|.+++..++++...|++|+++|+-++
T Consensus 15 ~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 15 DFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666667777777777777666554
No 147
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=73.79 E-value=44 Score=35.03 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013359 74 VVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (444)
Q Consensus 74 eIk~~e~~I~e~e~~I~eLq~kI~sLqkK 102 (444)
++-+++....+...++.+|+.+...+.+.
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~ 99 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEAVTEA 99 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554444433
No 148
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=73.66 E-value=9.8 Score=31.27 Aligned_cols=83 Identities=14% Similarity=0.253 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK 123 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~ 123 (444)
..+...+...|...-.++..+ .-+++...|.+++..+.+.+..|..|.-++.++.. ......+.++.....
T Consensus 11 E~df~~l~~~i~~kl~~i~~~--~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~-------~~R~~~~~klr~Yk~ 81 (102)
T 1vcs_A 11 EQDFAVLTAEITSKIARVPRL--PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPP-------QSRGMYSNRMRSYKQ 81 (102)
T ss_dssp HHHHHHHHHHHHHHHHHGGGS--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-------TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HhHHHHHHHHHHHHH
Confidence 344444444443333333322 33677888999999999999999999888876631 122355566666666
Q ss_pred HHHHHHHHHHHH
Q 013359 124 QIDNLKKESEKQ 135 (444)
Q Consensus 124 qIe~LkkelE~~ 135 (444)
++++|+.++...
T Consensus 82 dL~~lk~elk~~ 93 (102)
T 1vcs_A 82 EMGKLETDFKRS 93 (102)
T ss_dssp HHHHHHHHTHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665443
No 149
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=72.88 E-value=43 Score=28.39 Aligned_cols=8 Identities=13% Similarity=0.164 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 013359 122 EKQIDNLK 129 (444)
Q Consensus 122 e~qIe~Lk 129 (444)
|.-+..|.
T Consensus 52 NqTV~tL~ 59 (121)
T 3mq7_A 52 NHTVMALM 59 (121)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 150
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=72.66 E-value=40 Score=28.00 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 013359 111 VDKAHARADELEKQI 125 (444)
Q Consensus 111 i~~ae~~i~eLe~qI 125 (444)
+..|..++.+++.+.
T Consensus 51 L~iArQKLkdAe~~~ 65 (107)
T 2k48_A 51 LVTARQKLKDAEKAV 65 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 333444444444433
No 151
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=72.63 E-value=7.1 Score=39.81 Aligned_cols=55 Identities=20% Similarity=0.313 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 46 eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
+|++++.++..++.++.+++.+|++...++.+++..+.+.+..-..|.++|..+.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4555566666666666666666666555555565555555555555555555543
No 152
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=72.28 E-value=7.2 Score=35.80 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVA 76 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk 76 (444)
++++++...-|..|..+...++++++.++.+|+
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~ 44 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIK 44 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555544444444333333
No 153
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=71.85 E-value=14 Score=29.14 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 149 AEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (444)
Q Consensus 149 lEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eee 187 (444)
++.++.+++.++.-++..++++...+.++...|..++.+
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~q 50 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAEL 50 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444333333333333333333333333333
No 154
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=71.76 E-value=23 Score=30.77 Aligned_cols=40 Identities=8% Similarity=0.050 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHH---HHHHHHHHHHHHH
Q 013359 52 SKIRSLESHIDEKTQELKGKDEVVAQK---EKAIQDKSERIVS 91 (444)
Q Consensus 52 ~ki~~Lesqi~ele~eI~~k~~eIk~~---e~~I~e~e~~I~e 91 (444)
.++.++...++.+..++..+...+..+ ...+.+....+..
T Consensus 9 ~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~ 51 (151)
T 2zdi_C 9 KELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLEN 51 (151)
T ss_dssp THHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544444445 4444444444333
No 155
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=71.56 E-value=8.5 Score=26.88 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 75 VAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 75 Ik~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
|..++.+|...+++|.+++.++..|+
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555553
No 156
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=71.07 E-value=41 Score=31.91 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMM 189 (444)
Q Consensus 127 ~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~ 189 (444)
.|+++.+.+..+++-++-++.-...++.++..+++.|+....-.-.++..+|+.--.++.++.
T Consensus 153 ~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~ 215 (242)
T 3uux_B 153 ALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLK 215 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444443333
No 157
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=70.60 E-value=28 Score=31.90 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 117 RADELEKQIDNLKKESEKQQKEKE 140 (444)
Q Consensus 117 ~i~eLe~qIe~LkkelE~~~~e~~ 140 (444)
++......|.+|..++..+..+++
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLD 37 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444433333
No 158
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=70.47 E-value=3.6 Score=25.61 Aligned_cols=21 Identities=10% Similarity=0.354 Sum_probs=16.8
Q ss_pred hhcccHHHHHHHHHHHHHHHH
Q 013359 346 ALKPYTKKVVRAYGKFLKSAT 366 (444)
Q Consensus 346 ~~~Py~~~~~~~~~~~~~~a~ 366 (444)
.+.||+++++.++..++++.+
T Consensus 2 ~~~P~~e~ik~q~~~i~e~i~ 22 (26)
T 1oef_A 2 WFEPLVEDMQRQWAGLVEKVQ 22 (26)
T ss_dssp CCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHH
Confidence 367999999999998887654
No 159
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=70.41 E-value=25 Score=25.65 Aligned_cols=23 Identities=4% Similarity=0.073 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013359 160 LEKLQKINDEQKSKIRKTERALK 182 (444)
Q Consensus 160 veeLe~~~eeqekqI~elE~~Lq 182 (444)
++.|..+++.+...+..+...++
T Consensus 13 V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 13 AQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 160
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=70.13 E-value=17 Score=25.30 Aligned_cols=28 Identities=39% Similarity=0.500 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 141 ALEARAIEAEKKISDLSAKLEKLQKIND 168 (444)
Q Consensus 141 ~LEae~~elEkkleEle~kveeLe~~~e 168 (444)
+||++..+++.+..+++.++..|+.+..
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444444444444444444444444433
No 161
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=69.63 E-value=71 Score=29.61 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013359 121 LEKQIDNLKKESEKQQKEKEALE 143 (444)
Q Consensus 121 Le~qIe~LkkelE~~~~e~~~LE 143 (444)
++..+.++..+++.....+.+.|
T Consensus 151 l~~~~~~l~~qlE~~v~~K~~~E 173 (213)
T 1ik9_A 151 LLRDWNDVQGRFEKAVSAKEALE 173 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 162
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=69.33 E-value=60 Score=33.66 Aligned_cols=33 Identities=6% Similarity=0.009 Sum_probs=13.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 64 KTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (444)
Q Consensus 64 le~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI 96 (444)
...+|.+++..+.++++.-.+....|..|+...
T Consensus 93 V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~ 125 (461)
T 3ghg_B 93 IRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLW 125 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 334444434434334443333334444444433
No 163
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=68.93 E-value=25 Score=29.03 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 110 QVDKAHARADELEKQIDNLKKESEKQQKEK 139 (444)
Q Consensus 110 ~i~~ae~~i~eLe~qIe~LkkelE~~~~e~ 139 (444)
++..+..+|..|+.+.++|.++++.++-++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333
No 164
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=68.82 E-value=9.3 Score=31.18 Aligned_cols=75 Identities=19% Similarity=0.280 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 121 LEKQIDNLKKESEKQQKEKEALEARAI-EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (444)
Q Consensus 121 Le~qIe~LkkelE~~~~e~~~LEae~~-elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~ 198 (444)
+++-++.++.+.+.+..+......... +.|.++..--.+++.+...+-+++..-..++ +.+|++|.+++.++..+
T Consensus 12 l~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmK---q~YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 12 LNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMK---DAYEEEIKHLKLGLEQR 87 (92)
T ss_dssp -----CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHc
Confidence 344445555555555555555554443 5665554444444444444444444443333 45778888888887755
No 165
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=68.59 E-value=9.3 Score=37.94 Aligned_cols=29 Identities=17% Similarity=-0.032 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 71 KDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 71 k~~eIk~~e~~I~e~e~~I~eLq~kI~sL 99 (444)
+.++|.+++..|...+..|..|+..|.++
T Consensus 10 ~~~~~~~~e~~i~~~~~~i~~L~~~l~~~ 38 (323)
T 1lwu_C 10 ILEEVRILEQIGVSHDAQIQELSEMWRVN 38 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 33444445555555555555555544443
No 166
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=67.32 E-value=58 Score=27.68 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=15.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHH
Q 013359 39 DSSPLKIELDQLKSKIRSLESHID 62 (444)
Q Consensus 39 ~~~~l~~eL~~l~~ki~~Lesqi~ 62 (444)
++.+...++++|.+++..|...=+
T Consensus 3 ~a~~i~~~l~~Leae~q~L~~~E~ 26 (119)
T 3etw_A 3 DAASLVGELQALDAEYQNLANQEE 26 (119)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777765433
No 167
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=67.26 E-value=41 Score=35.22 Aligned_cols=31 Identities=10% Similarity=0.059 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 013359 170 QKSKIRKTERALKVAEEEMMRAKFEATSRSK 200 (444)
Q Consensus 170 qekqI~elE~~Lq~~Eeel~kak~E~~~~a~ 200 (444)
+..+..++.+++..++.++..++.+......
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~ 151 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQFYLRAL 151 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433
No 168
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=66.37 E-value=3.7 Score=30.12 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=19.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELK 69 (444)
Q Consensus 39 ~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~ 69 (444)
+..+++.++++++.++..|..+++++.+++.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666666666655544
No 169
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=66.17 E-value=7.3 Score=39.73 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQ 93 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq 93 (444)
..++..++.+..+++..+.+++.++++..+.+.+.+.....+-..|+++.
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333344444444444444444444433333333333333333333333
No 170
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=65.48 E-value=44 Score=34.46 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 75 VAQKEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 75 Ik~~e~~I~e~e~~I~eLq~kI~sL 99 (444)
|-+++..-.+...++.+|+.+...+
T Consensus 33 ~~~l~~~~r~~~~~~~~l~~~~n~~ 57 (455)
T 2dq0_A 33 ILKLDTEWRTKLKEINRLRHERNKI 57 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433333
No 171
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=64.98 E-value=64 Score=27.38 Aligned_cols=26 Identities=4% Similarity=0.065 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 159 KLEKLQKINDEQKSKIRKTERALKVA 184 (444)
Q Consensus 159 kveeLe~~~eeqekqI~elE~~Lq~~ 184 (444)
.+..+.+.+.+++..|..++.-|...
T Consensus 76 l~k~Y~~~~keLd~~ik~qekiIdnF 101 (119)
T 3etw_A 76 LASKYEDALKKLEAEMEQQKAVISDF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444
No 172
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=64.58 E-value=32 Score=24.92 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 112 DKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (444)
Q Consensus 112 ~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle 157 (444)
+++-.++..|..+-.-|.+++++....+..||.+..++..-+..++
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 3445566666777777777777777777777777766655444443
No 173
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=64.55 E-value=30 Score=24.05 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 146 AIEAEKKISDLSAKLEKLQKINDEQKSKI 174 (444)
Q Consensus 146 ~~elEkkleEle~kveeLe~~~eeqekqI 174 (444)
..++|.+..+++.+..+|+..+..++..-
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN 33 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444444444444444444443333
No 174
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=63.90 E-value=61 Score=26.70 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 143 EARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 143 Eae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
+.+...+|+.+.++..-..++...+.+|...++..+..+..+.........++.
T Consensus 20 ~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~ 73 (109)
T 3hd7_B 20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 73 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666666677777777777777777777776666666665555
No 175
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=63.54 E-value=66 Score=27.05 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIND 168 (444)
Q Consensus 119 ~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~e 168 (444)
.....-+..|...++.....+..++.+.........+...+...++.-.+
T Consensus 70 ~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~e 119 (150)
T 3ajw_A 70 INYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQD 119 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555444443
No 176
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=63.10 E-value=64 Score=26.72 Aligned_cols=53 Identities=9% Similarity=0.145 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIR 175 (444)
Q Consensus 123 ~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~ 175 (444)
++...|-=+++.++..+++++....++..+..+..+.++.+....+.++.++.
T Consensus 23 NEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~ 75 (103)
T 4h22_A 23 NEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFA 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333
No 177
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=62.63 E-value=52 Score=25.53 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 112 DKAHARADELEKQIDNLKKESEKQQKEKE 140 (444)
Q Consensus 112 ~~ae~~i~eLe~qIe~LkkelE~~~~e~~ 140 (444)
..++.+...|+.+|..++.+++.-..+..
T Consensus 10 q~~E~~N~~Le~~v~~le~~Le~s~~~q~ 38 (72)
T 3cve_A 10 QEVEIRNKDLEGQLSEMEQRLEKSQSEQD 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666554444
No 178
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=62.34 E-value=56 Score=25.79 Aligned_cols=31 Identities=29% Similarity=0.510 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 110 QVDKAHARADELEKQIDNLKKESEKQQKEKE 140 (444)
Q Consensus 110 ~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~ 140 (444)
++..++.+...|+.+|..++.+++.-..+..
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~~~q~ 44 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEARAERE 44 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666554444
No 179
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=62.25 E-value=1.6e+02 Score=30.92 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013359 78 KEKAIQDKSERIVSLQKELS 97 (444)
Q Consensus 78 ~e~~I~e~e~~I~eLq~kI~ 97 (444)
...++.+.++.++..++.+.
T Consensus 326 a~ael~~a~k~~a~~~er~~ 345 (551)
T 2b5u_A 326 ARAELNQANEDVARNQERQA 345 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444333
No 180
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=62.05 E-value=13 Score=32.34 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHH
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELKGK---DEVVAQKEKAIQD 84 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~~k---~~eIk~~e~~I~e 84 (444)
.++.++...+++++..+..+.+.+..+ ...+.+.+..++.
T Consensus 9 ~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~ 51 (151)
T 2zdi_C 9 KELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLEN 51 (151)
T ss_dssp THHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444 4444444444443
No 181
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=61.82 E-value=13 Score=35.24 Aligned_cols=13 Identities=8% Similarity=-0.112 Sum_probs=6.9
Q ss_pred hhHHHHHHHHhhh
Q 013359 289 KTKTIEACEATKT 301 (444)
Q Consensus 289 k~k~~p~~~~~r~ 301 (444)
+..|.++.+.+|.
T Consensus 158 RRew~~Ifk~Lk~ 170 (233)
T 2yko_A 158 RREWGPIFNILKE 170 (233)
T ss_dssp HHHTHHHHHHHHH
T ss_pred HHHHhHHHHHHHH
Confidence 4456666555443
No 182
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=61.71 E-value=30 Score=25.09 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHhh
Q 013359 89 IVSLQKELSSLQKK 102 (444)
Q Consensus 89 I~eLq~kI~sLqkK 102 (444)
+.+++.++..|.++
T Consensus 11 ~~~l~~~l~~L~~r 24 (51)
T 3m91_A 11 IHQLEARIDSLAAR 24 (51)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 183
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=61.07 E-value=31 Score=36.09 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013359 135 QQKEKEALEARAIEAEKKI 153 (444)
Q Consensus 135 ~~~e~~~LEae~~elEkkl 153 (444)
+..++..++.++.+++.++
T Consensus 83 l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 83 LSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 184
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=60.65 E-value=33 Score=34.14 Aligned_cols=12 Identities=25% Similarity=0.648 Sum_probs=5.3
Q ss_pred HhHHHhhhcccc
Q 013359 271 KEQWVVFTTNVE 282 (444)
Q Consensus 271 ~~~w~~~~~~~~ 282 (444)
.+.|+.+++.+.
T Consensus 317 ~~~W~~l~~~a~ 328 (346)
T 2nrj_A 317 KDSWKTLRTDAV 328 (346)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhHHHHHHHHHH
Confidence 344544444443
No 185
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=60.50 E-value=14 Score=31.43 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQ 66 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~ 66 (444)
++.||..|+.+++.++.+.....+
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~ 31 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSL 31 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555554433
No 186
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=60.39 E-value=46 Score=34.78 Aligned_cols=31 Identities=16% Similarity=0.008 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 013359 170 QKSKIRKTERALKVAEEEMMRAKFEATSRSK 200 (444)
Q Consensus 170 qekqI~elE~~Lq~~Eeel~kak~E~~~~a~ 200 (444)
+..+..++.+++..++.++..++.+...+..
T Consensus 76 l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555544433
No 187
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=60.25 E-value=72 Score=26.40 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013359 138 EKEALEARAIEAEKKISDLSAKL 160 (444)
Q Consensus 138 e~~~LEae~~elEkkleEle~kv 160 (444)
+++-|...+.+.+....++....
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~ 53 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQY 53 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 188
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=60.08 E-value=41 Score=34.72 Aligned_cols=34 Identities=21% Similarity=0.089 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHh
Q 013359 169 EQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (444)
Q Consensus 169 eqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ei 202 (444)
++..+..++.++++.++.++..++.+.......+
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 106 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKIDYYLWRL 106 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444455555555555555555555555444433
No 189
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=59.69 E-value=99 Score=27.79 Aligned_cols=24 Identities=8% Similarity=0.234 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhH
Q 013359 49 QLKSKIRSLESHIDEKTQELKGKD 72 (444)
Q Consensus 49 ~l~~ki~~Lesqi~ele~eI~~k~ 72 (444)
.+-.++..+.++..+...+-+.+.
T Consensus 14 ~v~~~L~e~h~qy~~ks~~yd~l~ 37 (170)
T 3l4q_C 14 AVGAQLKVYHQQYQDKSREYDQLY 37 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333333333
No 190
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=58.96 E-value=55 Score=24.56 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 013359 48 DQLKSKIRSLESHIDEKTQELKG 70 (444)
Q Consensus 48 ~~l~~ki~~Lesqi~ele~eI~~ 70 (444)
.+++.++..++.-+...+.+++.
T Consensus 9 ~~le~kl~~lEnIv~~l~~eve~ 31 (65)
T 3m0d_C 9 AELEGKLRVFENIVAVLNKEVEA 31 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 34444444444444433333333
No 191
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=58.92 E-value=79 Score=26.43 Aligned_cols=26 Identities=8% Similarity=0.207 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 75 VAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 75 Ik~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
+.++...+++....+..++..+..+.
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~ 28 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVR 28 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555443
No 192
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=58.25 E-value=59 Score=27.96 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013359 78 KEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 78 ~e~~I~e~e~~I~eLq~kI~sL 99 (444)
+++....++.....+.++++.+
T Consensus 28 Leek~~~~e~~~~~~~~Elee~ 49 (130)
T 3cl3_D 28 LEGRARAASEQARQLESEREAL 49 (130)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 4444444455555555555444
No 193
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=57.91 E-value=73 Score=25.67 Aligned_cols=62 Identities=13% Similarity=0.189 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 013359 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDN-LKKESEKQ 135 (444)
Q Consensus 69 ~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~-LkkelE~~ 135 (444)
+++...|.+++..+.+....|..|.-++.++.. . .......+.++.....++++ ++.++..+
T Consensus 30 e~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~--p---~~~R~~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 30 SQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIG--D---ASERATYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--C---HHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356667777777777777777777777766610 0 11123445555555555555 55554443
No 194
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=57.53 E-value=16 Score=25.52 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQEL 68 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI 68 (444)
...++.+..+|+..+.+|+++...+
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 195
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=57.34 E-value=86 Score=26.32 Aligned_cols=9 Identities=33% Similarity=0.567 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 013359 171 KSKIRKTER 179 (444)
Q Consensus 171 ekqI~elE~ 179 (444)
+.+|.++++
T Consensus 75 q~KiaeLKr 83 (113)
T 4fi5_A 75 QAKIDELKR 83 (113)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 196
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=56.65 E-value=10 Score=36.33 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 153 ISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (444)
Q Consensus 153 leEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~k 190 (444)
+.++...+..+..++..+...+.++.+++..+++++.+
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333
No 197
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=56.50 E-value=42 Score=25.85 Aligned_cols=12 Identities=17% Similarity=0.227 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 013359 147 IEAEKKISDLSA 158 (444)
Q Consensus 147 ~elEkkleEle~ 158 (444)
.+||.++.+++.
T Consensus 32 ~~LE~~v~~le~ 43 (70)
T 1gd2_E 32 KALETQVVTLKE 43 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 198
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=56.23 E-value=1e+02 Score=26.99 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 101 KKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKT 177 (444)
Q Consensus 101 kK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~el 177 (444)
.+....-++-...+.+=++.|+.++..-+.-+..+..-...++..+.+.+..++++..+.+.+.....+++..++.+
T Consensus 71 e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 71 ERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 199
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=56.14 E-value=29 Score=28.15 Aligned_cols=50 Identities=18% Similarity=0.390 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 49 ~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
++...|..|+.-+...+.. .-....++++..+++++..|.+|..-|.-.+
T Consensus 14 D~~~ql~~l~~~~~~~~~~--~~~~~~~El~~~l~el~e~l~DL~~SI~i~e 63 (95)
T 2c5k_T 14 DTKEQLNRINNYITRHNTA--GDDDQEEEIQDILKDVEETIVDLDRSIIVMK 63 (95)
T ss_dssp HHHHHHHHHHHHHHHTCCC----CTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544332111 1124556677777777777777777776654
No 200
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=55.99 E-value=47 Score=22.89 Aligned_cols=21 Identities=43% Similarity=0.528 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013359 140 EALEARAIEAEKKISDLSAKL 160 (444)
Q Consensus 140 ~~LEae~~elEkkleEle~kv 160 (444)
..++++++.+|+++..+.+++
T Consensus 23 aaleselqalekklaalkskl 43 (48)
T 1g6u_A 23 AALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 201
>2ynz_A General control protein GCN4, putative inner MEMB protein; membrane protein, DALL domain, DALL2, trimeric autotransport adhesin, TAA; 1.40A {Saccharomyces cerevisiae} PDB: 1uo2_A 1gcl_A 2ccn_A 1uo0_A 1unz_A 1uny_A 2bni_A* 1u9h_A*
Probab=55.44 E-value=38 Score=29.99 Aligned_cols=52 Identities=15% Similarity=0.337 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 49 ~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
++..+|.++-++|--++.+|.....+|......+.+....|..+...|..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i~~~GSQL~~tn~~Va~nt~~ia~vn~~i~~l~ 54 (154)
T 2ynz_A 3 QIEDKIEEILSKIYHIENEIARIKKLIYETNQKVDQNTSAIADINTSITNLG 54 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHhccchhhhhhhhhccc
Confidence 4567788888888888888888888888899999999999999988887775
No 202
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=55.17 E-value=77 Score=25.13 Aligned_cols=60 Identities=13% Similarity=0.333 Sum_probs=38.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 39 ~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
.++.++.+|.+-+.-++.|..++.+...+-+- .+|.+.+..+++....+.+|+..+.-+-
T Consensus 23 ~~~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNp--aeIA~~~~~L~qAraDL~~l~r~~av~g 82 (90)
T 4b6x_A 23 AGAALRQEIEDKQLMVNNLTDELQDAIDEANP--AEIANTSQQLRHARADLADLQRRFAVLR 82 (90)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHccCH--HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667766666666666666665555333 5677777777777777777777666554
No 203
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=55.03 E-value=58 Score=31.55 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 167 NDEQKSKIRKTERALKVAEEEMMRAKF 193 (444)
Q Consensus 167 ~eeqekqI~elE~~Lq~~Eeel~kak~ 193 (444)
....+.+++.++.++..++.++..++.
T Consensus 124 ~~~a~a~~~~~~~~l~~~~~~l~~a~~ 150 (369)
T 4dk0_A 124 LNNAKAEMDVVQENIKQAEIEVNTAET 150 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443
No 204
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=54.02 E-value=86 Score=25.55 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 115 HARADELEKQIDNLKKESEKQQKEKEAL 142 (444)
Q Consensus 115 e~~i~eLe~qIe~LkkelE~~~~e~~~L 142 (444)
+.++.+....|+.|+.++-..+.-+.++
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555544444444443
No 205
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=53.82 E-value=83 Score=28.38 Aligned_cols=13 Identities=8% Similarity=0.595 Sum_probs=5.5
Q ss_pred chhHHHHhhhhhh
Q 013359 315 DPYFQEAKKFSKP 327 (444)
Q Consensus 315 ~Py~~e~k~~~~p 327 (444)
+.|+..++..++-
T Consensus 146 d~ylK~vR~LaRe 158 (174)
T 2p22_A 146 DTFVKQGRELARQ 158 (174)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 206
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=53.16 E-value=63 Score=30.92 Aligned_cols=16 Identities=6% Similarity=0.189 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 013359 181 LKVAEEEMMRAKFEAT 196 (444)
Q Consensus 181 Lq~~Eeel~kak~E~~ 196 (444)
+..++.++..++.+..
T Consensus 130 l~~~~a~l~~a~a~l~ 145 (341)
T 3fpp_A 130 IGTIDAQIKRNQASLD 145 (341)
T ss_dssp HHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444443
No 207
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=53.03 E-value=11 Score=23.26 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=13.8
Q ss_pred cchhHHHHhhHHHHHHHHhhhh
Q 013359 281 VEPHVQTLKTKTIEACEATKTA 302 (444)
Q Consensus 281 ~~p~ve~~k~k~~p~~~~~r~~ 302 (444)
+.|+++.+|.++..++++++..
T Consensus 3 ~~P~~e~ik~q~~~i~e~i~~a 24 (26)
T 1oef_A 3 FEPLVEDMQRQWAGLVEKVQAA 24 (26)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHHhh
Confidence 4566666666666666665543
No 208
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=52.95 E-value=34 Score=32.92 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 164 QKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 164 e~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
+......+.+++.++.++..++..+..++..+.
T Consensus 120 ~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~ 152 (341)
T 3fpp_A 120 ATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLD 152 (341)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333334444455555555555555555554443
No 209
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=52.86 E-value=1.3e+02 Score=27.01 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 108 AEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (444)
Q Consensus 108 ~~~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeL 163 (444)
...+...+.=|.-++.+...++..+++...........+......+.......+.+
T Consensus 70 ~~~i~~m~~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKf 125 (169)
T 3k29_A 70 SDAILKMKAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKT 125 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777776666666655555555555555555555555
No 210
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=52.45 E-value=1.5e+02 Score=29.60 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhhhccCCCh
Q 013359 170 QKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPP 212 (444)
Q Consensus 170 qekqI~elE~~Lq~~Eeel~kak~E~~~~a~ei~~~~g~wl~P 212 (444)
+..-+++....++.+.-...+++.+..-+...+.+.||.=+||
T Consensus 357 ~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~p~ 399 (406)
T 4dyl_A 357 KRQVLQEALQGLQVALCSQAKLQAQQELLQTKLEHLGPGEPPP 399 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC
T ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 3444556666666666666666666666677788889888888
No 211
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=51.00 E-value=82 Score=24.18 Aligned_cols=14 Identities=14% Similarity=0.387 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 013359 152 KISDLSAKLEKLQK 165 (444)
Q Consensus 152 kleEle~kveeLe~ 165 (444)
.+.+++.++..++.
T Consensus 30 ~i~~LE~~v~~le~ 43 (70)
T 1gd2_E 30 HLKALETQVVTLKE 43 (70)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 212
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=50.92 E-value=72 Score=30.83 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLES 59 (444)
Q Consensus 43 l~~eL~~l~~ki~~Les 59 (444)
+..++.++++.+.+++.
T Consensus 68 ~~~~l~~~~a~l~~~~a 84 (369)
T 4dk0_A 68 QINTLNTRKAALASYQA 84 (369)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 213
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=50.88 E-value=2e+02 Score=28.73 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 013359 50 LKSKIRSLESHIDEKTQELKGKDEVVAQK 78 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~~k~~eIk~~ 78 (444)
+..++.....+..+...+.+.+.++-...
T Consensus 124 ~~~~l~e~~~~~~~~~~~~~~~~~~~~~~ 152 (373)
T 3hhm_B 124 VGKKLHEYNTQFQEKSREYDRLYEEYTRT 152 (373)
T ss_dssp GGC--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHhccc
Confidence 33444444444444444433333333333
No 214
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=50.70 E-value=38 Score=24.91 Aligned_cols=27 Identities=33% Similarity=0.290 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 75 VAQKEKAIQDKSERIVSLQKELSSLQK 101 (444)
Q Consensus 75 Ik~~e~~I~e~e~~I~eLq~kI~sLqk 101 (444)
+.+++.....++.+..+|.++|..|+.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 215
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=50.64 E-value=52 Score=33.50 Aligned_cols=32 Identities=9% Similarity=-0.039 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 013359 169 EQKSKIRKTERALKVAEEEMMRAKFEATSRSK 200 (444)
Q Consensus 169 eqekqI~elE~~Lq~~Eeel~kak~E~~~~a~ 200 (444)
++..+..++.+++..++.++..++.+......
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (421)
T 1ses_A 68 ALIARGKALGEEAKRLEEALREKEARLEALLL 99 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555554433
No 216
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.00 E-value=15 Score=26.83 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVV 75 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eI 75 (444)
..+.+.|+.+.+.|+.++.++..++++....+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888887777766655443
No 217
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=49.96 E-value=92 Score=24.48 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013359 149 AEKKISDLSAKLEKLQKIN 167 (444)
Q Consensus 149 lEkkleEle~kveeLe~~~ 167 (444)
+..++.+++..-+.|....
T Consensus 83 i~~~l~~l~~rw~~L~~~~ 101 (119)
T 3uun_A 83 VQEQMNLLNSRWECLRVAS 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 218
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A
Probab=49.96 E-value=1.1e+02 Score=25.30 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013359 117 RADELEKQIDNLKKESEKQ 135 (444)
Q Consensus 117 ~i~eLe~qIe~LkkelE~~ 135 (444)
.|.-|...++.|.++-|+.
T Consensus 59 NItNLtdsV~~L~dDAed~ 77 (107)
T 2wps_A 59 NINNLSDSITTLMKQIEDK 77 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHH
Confidence 4555555555555444443
No 219
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=49.84 E-value=17 Score=37.21 Aligned_cols=53 Identities=9% Similarity=0.127 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 48 ~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
+.|+.++..++.++.++..+++....++..+..++.+.+..-..|.++|.++.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444555555555555555555555555555555555555555555555553
No 220
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=49.51 E-value=34 Score=26.60 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHH-------HHHHHHHHHHHHHHH
Q 013359 47 LDQLKSKIRSLESHIDEKTQELKGKDE-------VVAQKEKAIQDKSER 88 (444)
Q Consensus 47 L~~l~~ki~~Lesqi~ele~eI~~k~~-------eIk~~e~~I~e~e~~ 88 (444)
++.++.++..|..+++.....++..+. .+.+++...++.+..
T Consensus 4 m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e 52 (75)
T 3mtu_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGE 52 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 455666676666666666666666555 555555555554443
No 221
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=49.40 E-value=1e+02 Score=32.16 Aligned_cols=27 Identities=7% Similarity=-0.061 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 013359 174 IRKTERALKVAEEEMMRAKFEATSRSK 200 (444)
Q Consensus 174 I~elE~~Lq~~Eeel~kak~E~~~~a~ 200 (444)
..++.+++..++.++..++.+...+..
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~ 139 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLML 139 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554433
No 222
>3faj_A ORF131, putative uncharacterized protein; archaeal virus, extremophiles, bicaudavirus, structural PROT binding protein; 1.70A {Acidianus two-tailed virus}
Probab=49.29 E-value=19 Score=30.81 Aligned_cols=63 Identities=17% Similarity=0.028 Sum_probs=47.6
Q ss_pred hHHHHhhHHHHHHHHhhhhcchhHHhh---hhhcchhHHHHhhhhhhHHHHHHhhcCcchHhHHHh
Q 013359 284 HVQTLKTKTIEACEATKTAVTPHIIRV---QEVVDPYFQEAKKFSKPYIDQVATVAKPHVDNVRVA 346 (444)
Q Consensus 284 ~ve~~k~k~~p~~~~~r~~~~p~~~~~---~~~~~Py~~e~k~~~~py~~~a~~~~~p~~~~~~~~ 346 (444)
+-+.++..+-.+++.+|++..|+=-+= ++.--|-..=++-|+.|-|+||+.|...--.+|+.+
T Consensus 67 G~E~~keaIHeiIK~IreA~kPyr~~g~gf~~~pip~~via~v~s~~~~~~~~~~~~~~~~~~~~~ 132 (151)
T 3faj_A 67 GDERTKEAIHAIVKMISDAMKPYRNKGSGFQSQPIPGEVIAQVTSNPEYQQAKAFLASPATQVRNI 132 (151)
T ss_dssp TCHHHHHHHHHHHHHHHHHHGGGC-------CEECCHHHHHHHHHCHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhcccccCCCCccCCCCcHHHHHHHhcChHHHHHHHHhcCcHHHhhhh
Confidence 456678888888999999999986643 444567777899999999999999987766777664
No 223
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=49.20 E-value=97 Score=29.84 Aligned_cols=42 Identities=19% Similarity=0.427 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 58 ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 58 esqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sL 99 (444)
..+...++.+|...+.++.++++.+++.-..|..+..+|..+
T Consensus 215 d~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~ 256 (268)
T 2yo3_A 215 DQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARI 256 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777777777777777777777777665
No 224
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=48.32 E-value=45 Score=34.02 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI 96 (444)
|..++..++.++.+++.++..+..++++..+++.+.+.....+-..|.++.+.|
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 444444444444444444444444444444444444444444444444444433
No 225
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=47.66 E-value=81 Score=24.42 Aligned_cols=48 Identities=10% Similarity=-0.000 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIV 90 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~ 90 (444)
+..+.++.+..|..++.++..+..++...-.+-..+=+..-.++.+|+
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIa 50 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666665555555444444444333333333333
No 226
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=47.48 E-value=89 Score=27.51 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLK 129 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~Lk 129 (444)
++.+++...+..|+.-+
T Consensus 24 qL~nrla~~~am~~sqq 40 (158)
T 3tul_A 24 QLESRLAVWQAMIESQK 40 (158)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 227
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=47.23 E-value=1.8e+02 Score=26.93 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (444)
Q Consensus 117 ~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~L 181 (444)
++..|..+.++++...+.+..+++++-..+.+.|. ..+..--.-+.+.+.+|++++++|
T Consensus 140 ~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~------~L~~KF~~lLNeKK~KIR~lq~~L 198 (213)
T 1ik9_A 140 KNEHLQKENERLLRDWNDVQGRFEKAVSAKEALET------DLYKRFILVLNEKKTKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444455566666666665555555555555543 222333344445555566655444
No 228
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=47.08 E-value=37 Score=22.39 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013359 77 QKEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 77 ~~e~~I~e~e~~I~eLq~kI~sL 99 (444)
++|+.++++-..+.+|++++..+
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444444444444444433
No 229
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=46.64 E-value=43 Score=28.42 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 80 KAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (444)
Q Consensus 80 ~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~Lk 129 (444)
.+|..++..+..++.+++.+...++. .-+.+...++..|+.+|.+++
T Consensus 10 ~Eiq~L~drLD~~~rKlaaa~~rgd~---~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 10 NEIKRLSDRLDAIRHQQADLSLVEAA---DKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTCT---THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555444433332 344444555555555555544
No 230
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=46.35 E-value=2.9e+02 Score=29.28 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 131 ESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (444)
Q Consensus 131 elE~~~~e~~~LEae~~elEkkleEle~kv 160 (444)
+++......+..+.+...++.+..+.+..+
T Consensus 488 ~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~ 517 (592)
T 1f5n_A 488 EIEVERVKAESAQASAKMLHEMQRKNEQMM 517 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444433333333
No 231
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=46.07 E-value=2.8e+02 Score=28.99 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 117 RADELEKQIDNLKKESEKQQKEKE 140 (444)
Q Consensus 117 ~i~eLe~qIe~LkkelE~~~~e~~ 140 (444)
++..|++-++.+.+....-+.++.
T Consensus 147 q~~~LekAl~s~~~i~~~e~~~l~ 170 (526)
T 3iyk_A 147 QFDILNKAVTSYNKILTEEDLQMR 170 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 444444444444444444444433
No 232
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=45.43 E-value=34 Score=21.88 Aligned_cols=8 Identities=50% Similarity=0.713 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 013359 50 LKSKIRSL 57 (444)
Q Consensus 50 l~~ki~~L 57 (444)
++++|..|
T Consensus 7 lkqeiaal 14 (33)
T 4dzn_A 7 LKQEIAAL 14 (33)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 233
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=45.24 E-value=1e+02 Score=23.56 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 140 ~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
.+-+.+...+|..+.++..-..++...+.+|...++.++..+..+..-......++.
T Consensus 6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~ 62 (77)
T 1jth_B 6 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777777788888888888888888888777777776666655
No 234
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=45.23 E-value=1e+02 Score=24.61 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 158 AKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (444)
Q Consensus 158 ~kveeLe~~~eeqekqI~elE~~Lq~~Eee 187 (444)
..++.|+.++..+..+|+.++.++..+...
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444433
No 235
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=45.21 E-value=1.3e+02 Score=24.76 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 151 KKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (444)
Q Consensus 151 kkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~ 198 (444)
.++-+++..++.++.....++..-...-.++..++.++.++..|-..+
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L 84 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQL 84 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433444445555555555555554444
No 236
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=44.95 E-value=94 Score=23.16 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 140 ~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
.+-+.+...++..+.++..-..++...+.+|...++.++..+..+..-......++.
T Consensus 8 ~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~ 64 (68)
T 1n7s_B 8 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777777778888888888888888888888888877777776666554
No 237
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=44.55 E-value=78 Score=22.12 Aligned_cols=10 Identities=60% Similarity=0.783 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 013359 121 LEKQIDNLKK 130 (444)
Q Consensus 121 Le~qIe~Lkk 130 (444)
|++.|.+|++
T Consensus 8 lrkkiarlkk 17 (52)
T 3he5_B 8 LRKKIARLKK 17 (52)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 3444444443
No 238
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=44.51 E-value=30 Score=26.51 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 013359 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQD 84 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e 84 (444)
+...|..-+..|.+++..+.+++.+|.++...+.+
T Consensus 16 ~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 16 FAKILMLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666655555555555544444433
No 239
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=44.50 E-value=75 Score=22.53 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013359 78 KEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 78 ~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
+|..++..+..+..|+.+++-|-
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLl 25 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLL 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554443
No 240
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=44.36 E-value=2.4e+02 Score=27.59 Aligned_cols=12 Identities=8% Similarity=-0.094 Sum_probs=7.7
Q ss_pred HhhhhhccCCCh
Q 013359 201 ELTEVHSAWLPP 212 (444)
Q Consensus 201 ei~~~~g~wl~P 212 (444)
.++.-||...|.
T Consensus 101 rLs~pgg~~dpr 112 (302)
T 3ibp_A 101 RLSQPGGSEDQR 112 (302)
T ss_dssp HHHSCCCCCCHH
T ss_pred HHcCCCCCCCHH
Confidence 355667777765
No 241
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=44.32 E-value=1.3e+02 Score=24.62 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (444)
Q Consensus 128 LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~L 181 (444)
.+.-+.+.+-.....-++..++..++.+.......-+..++++++.|+.|.++|
T Consensus 41 A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 41 AQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333444444444455555555555555555555555555555554444
No 242
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=43.65 E-value=1.3e+02 Score=24.55 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 139 KEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEA 195 (444)
Q Consensus 139 ~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~ 195 (444)
+..++....++..-..++...+++....++..+..++......+....++.++..-.
T Consensus 23 I~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yq 79 (109)
T 3hd7_B 23 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 79 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555666666666666666666666666666666666665433
No 243
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=43.21 E-value=1.2e+02 Score=24.73 Aligned_cols=11 Identities=45% Similarity=0.673 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 013359 87 ERIVSLQKELS 97 (444)
Q Consensus 87 ~~I~eLq~kI~ 97 (444)
.+|..|..+|.
T Consensus 54 ~EI~~L~~eI~ 64 (96)
T 1t3j_A 54 EEIARLSKEID 64 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 244
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=43.06 E-value=1.2e+02 Score=23.85 Aligned_cols=14 Identities=7% Similarity=0.261 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 013359 112 DKAHARADELEKQI 125 (444)
Q Consensus 112 ~~ae~~i~eLe~qI 125 (444)
..+..++.+++.+.
T Consensus 22 ~~A~QKLkdA~~~~ 35 (78)
T 2ic6_A 22 VTTRQKLKDAERAV 35 (78)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33344444444333
No 245
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=43.05 E-value=1.6e+02 Score=25.14 Aligned_cols=31 Identities=6% Similarity=0.109 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 70 GKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 70 ~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
+....-+++...++..+.+|.+|+.-|...+
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666666666666666665554
No 246
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=43.00 E-value=79 Score=21.75 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 73 EVVAQKEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 73 ~eIk~~e~~I~e~e~~I~eLq~kI~sL 99 (444)
+++..++.+++-+++.++.|.++++.+
T Consensus 20 eelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555655555566666666555433
No 247
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=42.94 E-value=61 Score=28.05 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 77 QKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 77 ~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
+++..+.....+|.+|..+|.+++
T Consensus 83 DlE~kvkkq~yEI~dL~~rV~Dl~ 106 (133)
T 1j1d_C 83 DIEAKVTKNITEIADLTQKIFDLR 106 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHcchHHHHHHHHHHHHH
Confidence 344444444445555555555543
No 248
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=42.21 E-value=24 Score=33.80 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 157 SAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRS 199 (444)
Q Consensus 157 e~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~~~a 199 (444)
+..+..++..+..+..+...+...+..+..++.+++.|...++
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456667777777777777777777777777777777776553
No 249
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=41.96 E-value=1e+02 Score=22.78 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 143 EARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 143 Eae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
+.....++..+.++..-..+|...+.+|...++.++..+..+..-......++.
T Consensus 8 ~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~ 61 (65)
T 1gl2_B 8 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLS 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777778888888888888888888888888887777777666554
No 250
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=41.86 E-value=1.5e+02 Score=24.61 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEl 156 (444)
.++.++.+|..++..|+..++.+.++.+=.=.++.++|--+++.
T Consensus 15 ~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~ 58 (106)
T 4e61_A 15 KSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTT 58 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555554445555555555443
No 251
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=41.62 E-value=1.4e+02 Score=24.30 Aligned_cols=13 Identities=31% Similarity=0.314 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 013359 81 AIQDKSERIVSLQ 93 (444)
Q Consensus 81 ~I~e~e~~I~eLq 93 (444)
+|.+++.+|+.|+
T Consensus 55 EI~~L~~eI~~LE 67 (96)
T 1t3j_A 55 EIARLSKEIDQLE 67 (96)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444333
No 252
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=40.64 E-value=37 Score=34.68 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 75 VAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 75 Ik~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
+-+++..-.+...++.+|+.+...+.
T Consensus 32 ~~~~~~~~r~~~~~~~~l~~~~n~~s 57 (425)
T 2dq3_A 32 VLELDKRRREIIKRLEALRSERNKLS 57 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 253
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=40.59 E-value=1.1e+02 Score=22.82 Aligned_cols=56 Identities=13% Similarity=0.233 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 141 ~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
+-+.+...+++.+.++..-..++...+.++...++.++..+..+..-......++.
T Consensus 7 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~ 62 (69)
T 3b5n_B 7 ARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTD 62 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777777777777777777777788777777777776666666554
No 254
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=40.03 E-value=1.3e+02 Score=23.49 Aligned_cols=20 Identities=5% Similarity=-0.001 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013359 156 LSAKLEKLQKINDEQKSKIR 175 (444)
Q Consensus 156 le~kveeLe~~~eeqekqI~ 175 (444)
+..+++.++..-+.+.....
T Consensus 83 i~~~l~~l~~rw~~L~~~~~ 102 (119)
T 3uun_A 83 VQEQMNLLNSRWECLRVASM 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333
No 255
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=39.90 E-value=53 Score=33.03 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (444)
Q Consensus 71 k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ae~~i~eLe~qIe~LkkelE~~~ 136 (444)
.++.++.++.++++++++|..+..+++. .. ...+.++++.++++|++.+++.+....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~k~~~~~~~~~~~~~~~~~~~~~~~ 301 (426)
T 1lrz_A 245 FDEYIKELNEERDILNKDLNKALKDIEK---RP------ENKKAHNKRDNLQQQLDANEQKIEEGK 301 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---CT------TCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh---Cc------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555666555555531 11 123445667777777777777666543
No 256
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=39.62 E-value=97 Score=23.15 Aligned_cols=47 Identities=23% Similarity=0.301 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKET 104 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s 104 (444)
-.|.=+++.-+..-+.+|..+- +.-...+.++.-++.+|.+||.+++
T Consensus 12 ~qeylevK~ALaaSeAkiQQLm--------------kVN~~ls~Elr~mQ~~lq~LQsen~ 58 (63)
T 2w6a_A 12 LQEYLELKKALATSEAKVQQLM--------------KVNSSLSDELRKLQREIHKLQAENL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHH--------------HHhHhhhHHHHHHHHHHHHHHhhhh
Confidence 3455555555655555555432 2223344455555555555554443
No 257
>2ou1_A Apolipoprotein A-II; high density lipoproteins, helix, cholesterol metabolism X-RAY diffraction, lipid binding protein; 2.00A {Homo sapiens} PDB: 1l6l_A
Probab=38.97 E-value=16 Score=28.31 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=14.1
Q ss_pred CcchHhHHHhhcccHHHHHHHHHHHHHH
Q 013359 337 KPHVDNVRVALKPYTKKVVRAYGKFLKS 364 (444)
Q Consensus 337 ~p~~~~~~~~~~Py~~~~~~~~~~~~~~ 364 (444)
+-|+++-..-+.|.+.++.+-+-.|+++
T Consensus 39 kaYfektqeqltPlvkkagTdl~nFlS~ 66 (77)
T 2ou1_A 39 KSYFEKSKEQLTPLIKKAGTELVNFLSY 66 (77)
T ss_dssp THHHHHHHTTTSHHHHTHHHHTTC-CHH
T ss_pred HHHHHHHHHHHhHHHHHhhhHHHHHHHH
Confidence 3444455555556555555555544443
No 258
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=38.85 E-value=1.3e+02 Score=23.17 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~s 98 (444)
+...+..+..+.+++..+++...+++......-.+.......+..+|..
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~ 50 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLT 50 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 259
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=38.65 E-value=60 Score=26.98 Aligned_cols=34 Identities=9% Similarity=0.111 Sum_probs=13.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 66 QELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 66 ~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sL 99 (444)
+.|..++++-=+++..+.....+|.+|..++.++
T Consensus 56 ~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 56 QTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 3333333333334444444444444444444433
No 260
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=38.06 E-value=1.8e+02 Score=24.30 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013359 118 ADELEKQIDNLKKESEKQQKEKE 140 (444)
Q Consensus 118 i~eLe~qIe~LkkelE~~~~e~~ 140 (444)
+..|+..|...+..+.......+
T Consensus 76 i~~L~~~I~~q~~~l~~~~~~~e 98 (150)
T 3ajw_A 76 IQTLEKAIEQHRLQLTQWTQKVD 98 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 261
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=37.82 E-value=75 Score=32.33 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 109 EQVDKAHARADELEKQIDNLKKESEKQ 135 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe~LkkelE~~ 135 (444)
.+...+.+++..++.+...++.++...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 75 NRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777777776655
No 262
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=37.66 E-value=1.3e+02 Score=22.73 Aligned_cols=11 Identities=0% Similarity=0.259 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 013359 45 IELDQLKSKIR 55 (444)
Q Consensus 45 ~eL~~l~~ki~ 55 (444)
.-|.+++.+..
T Consensus 9 ~il~eiRaQYE 19 (77)
T 3trt_A 9 AAMRDVRQQYE 19 (77)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 263
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=37.62 E-value=1.8e+02 Score=24.19 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 151 KKISDLSAKLEKLQKINDEQKSKIRKTERALKV 183 (444)
Q Consensus 151 kkleEle~kveeLe~~~eeqekqI~elE~~Lq~ 183 (444)
.++.++...++.++++.+=+-.+++.++-=.+.
T Consensus 25 ~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe 57 (106)
T 4e61_A 25 EEIEQYKGTVSTLEIEREFYFNKLRDIEILVHT 57 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443333
No 264
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=37.12 E-value=63 Score=20.39 Aligned_cols=15 Identities=47% Similarity=0.649 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 013359 150 EKKISDLSAKLEKLQ 164 (444)
Q Consensus 150 EkkleEle~kveeLe 164 (444)
|+++..++++++.++
T Consensus 7 ekkcaalesklqale 21 (31)
T 3ljm_A 7 EKKCAALESKLQALE 21 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 265
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=36.70 E-value=36 Score=33.65 Aligned_cols=25 Identities=12% Similarity=0.344 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 73 EVVAQKEKAIQDKSERIVSLQKELS 97 (444)
Q Consensus 73 ~eIk~~e~~I~e~e~~I~eLq~kI~ 97 (444)
.+|..+...+..++.+|..|+++|.
T Consensus 18 ~~i~~L~~~l~~~~~ki~~L~~~i~ 42 (319)
T 1fzc_C 18 SSIRYLQEIYNSNNQKIVNLKEKVA 42 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 266
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=36.08 E-value=1e+02 Score=25.53 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 42 ~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sL 99 (444)
.|+.-..++-..|..|+++.-+++.. +.....+|.+|..++.++
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~k--------------v~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQ--------------IKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH--------------HHhhhhHHHHHHHHHHHh
Confidence 45555556666666666665555444 444445555555555555
No 267
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=35.28 E-value=70 Score=26.60 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLKKES 132 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~Lkkel 132 (444)
+++.++..-+-+|..|...+
T Consensus 67 DlE~kv~kq~yEI~eL~~rV 86 (107)
T 1ytz_T 67 DFAEQIKRKKYEIVTLRNRI 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhhhHHHHHHHHH
Confidence 33333333333444443333
No 268
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=35.12 E-value=1.8e+02 Score=23.70 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176 (444)
Q Consensus 110 ~i~~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~e 176 (444)
++..++.++..++.-+..-.-..-..-.+...+.+++.+...........++++++.+..++++|.+
T Consensus 30 El~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl~~ 96 (98)
T 4fm3_A 30 ELKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQLGE 96 (98)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3555566666666555555545555555666777777777777777777777777777777776654
No 269
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=34.65 E-value=91 Score=31.29 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 109 EQVDKAHARADELEKQIDNLKKESE 133 (444)
Q Consensus 109 ~~i~~ae~~i~eLe~qIe~LkkelE 133 (444)
+-+..+++++..+++++++++..++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDIE 271 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455556666666666666655553
No 270
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=33.93 E-value=71 Score=23.19 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (444)
Q Consensus 72 ~~eIk~~e~~I~e~e~~I~eLq~kI~sLqk 101 (444)
..++.+++..+.+++.+...|..++..|+.
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666653
No 271
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=33.75 E-value=4.3e+02 Score=27.59 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013359 164 QKINDEQKSKIRKTERALKV 183 (444)
Q Consensus 164 e~~~eeqekqI~elE~~Lq~ 183 (444)
...+++....++.+.+.++.
T Consensus 188 ~~mi~~yr~k~~aL~~aIe~ 207 (526)
T 3iyk_A 188 TVMVKEYRDKIDALKNAIEV 207 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 272
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=33.63 E-value=1.5e+02 Score=22.21 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 143 EARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 143 Eae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
+.....++..+.++..-..+|...+.+|...|+.++..+..+..-......++.
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~ 58 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQ 58 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777777777777777777777776666666555
No 273
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=33.51 E-value=3.4e+02 Score=26.28 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013359 168 DEQKSKIRKTERALKVAEEE 187 (444)
Q Consensus 168 eeqekqI~elE~~Lq~~Eee 187 (444)
.-.+..+-++++.+....-+
T Consensus 121 sf~kgd~~~ier~ln~~~pd 140 (302)
T 2y3a_B 121 RAQASDNREIDKRMNSLKPD 140 (302)
T ss_dssp HHHHHHHHHHHHHHHHHTHH
T ss_pred hhhhhHHHhHHhhhccCChH
Confidence 33333333333333333333
No 274
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=33.37 E-value=56 Score=21.93 Aligned_cols=7 Identities=29% Similarity=0.610 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 013359 91 SLQKELS 97 (444)
Q Consensus 91 eLq~kI~ 97 (444)
+|++++.
T Consensus 19 ~Le~EV~ 25 (36)
T 1kd8_A 19 HLENEVA 25 (36)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 275
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=33.10 E-value=1.8e+02 Score=22.83 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013359 149 AEKKISDLSAKLEKLQK 165 (444)
Q Consensus 149 lEkkleEle~kveeLe~ 165 (444)
+..++.+++..-+.|..
T Consensus 83 i~~~l~~l~~rw~~L~~ 99 (118)
T 3uul_A 83 IQEQMTLLNARWEALRV 99 (118)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 276
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=32.82 E-value=1.7e+02 Score=22.70 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 013359 78 KEKAIQDKSERIVSLQKELSSLQKK 102 (444)
Q Consensus 78 ~e~~I~e~e~~I~eLq~kI~sLqkK 102 (444)
+|..++.++..+..||.+++.|-.+
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaE 29 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAE 29 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544433
No 277
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=32.25 E-value=2e+02 Score=23.16 Aligned_cols=23 Identities=17% Similarity=0.227 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013359 123 KQIDNLKKESEKQQKEKEALEAR 145 (444)
Q Consensus 123 ~qIe~LkkelE~~~~e~~~LEae 145 (444)
++|..+++.-..++....+..-+
T Consensus 21 eev~~lKq~RRtlKNRgyAq~CR 43 (90)
T 2wt7_B 21 DEVIRLKQKRRTLKNRGYAQSCR 43 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHH
Confidence 45555555555555555544443
No 278
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=31.93 E-value=2.7e+02 Score=25.52 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=4.7
Q ss_pred hHHHHHHHHHHH
Q 013359 43 LKIELDQLKSKI 54 (444)
Q Consensus 43 l~~eL~~l~~ki 54 (444)
+..++.++++.+
T Consensus 58 ~~~~l~~a~a~l 69 (277)
T 2f1m_A 58 YQATYDSAKGDL 69 (277)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 279
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=31.80 E-value=26 Score=34.67 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013359 78 KEKAIQDKSERIVSLQKELS 97 (444)
Q Consensus 78 ~e~~I~e~e~~I~eLq~kI~ 97 (444)
+|..|...+.+|..|++.|.
T Consensus 9 lE~~Il~~~~~i~~L~~~l~ 28 (319)
T 1fzc_C 9 YEASILTHDSSIRYLQEIYN 28 (319)
T ss_dssp -CTTTTTHHHHHHHHHHHHH
T ss_pred HHHHhhChHHHHHHHHHHHH
Confidence 33333333333333333333
No 280
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=31.68 E-value=3e+02 Score=25.10 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 73 EVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 73 ~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
....+.....++.+.-|-++...|....
T Consensus 136 ~~~~e~~e~kn~le~~i~~~~~~l~~~~ 163 (227)
T 1u00_A 136 VKARMLAEQKVEAARVLESLHGALAADA 163 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344455555666666666666665543
No 281
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=31.66 E-value=28 Score=33.03 Aligned_cols=64 Identities=8% Similarity=0.066 Sum_probs=43.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhh
Q 013359 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI--------QDKSERIVSLQKELSSLQKKE 103 (444)
Q Consensus 40 ~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I--------~e~e~~I~eLq~kI~sLqkK~ 103 (444)
+..+..++..++.++.+++..++.+++++++.-+.-...+.-| ...-..+++...+|..+|.-+
T Consensus 159 A~~L~q~i~~ln~k~~~~E~si~~L~~qLeElv~~k~~~dqLi~~RD~~tR~~fv~LLNEKK~KIR~qqrlL 230 (246)
T 1z56_A 159 ADKLYKDICCVNDSYRNIKESDSSNRNRVEQLARERELLDKLLETRDERTRAMMVTLLNEKKKKIRELHEIL 230 (246)
T ss_dssp CTTSGGGTTHHHHHHHHTTTTTTHHHHHHHHTTTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455667777777777777777777777777777766666666 555556666666666665433
No 282
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=31.39 E-value=1.1e+02 Score=27.80 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013359 78 KEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 78 ~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
++..+.....+|.+|..+|.+++
T Consensus 84 lE~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 84 IEAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcchhHHHHHHHHHHHH
Confidence 44444444444444544454443
No 283
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=31.32 E-value=64 Score=21.37 Aligned_cols=8 Identities=13% Similarity=0.326 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 013359 151 KKISDLSA 158 (444)
Q Consensus 151 kkleEle~ 158 (444)
.+++++-.
T Consensus 8 dKVEeLl~ 15 (34)
T 3c3f_A 8 XKLEXILS 15 (34)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33333333
No 284
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=31.26 E-value=1.5e+02 Score=21.35 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013359 114 AHARADELEKQIDNLKKESEK 134 (444)
Q Consensus 114 ae~~i~eLe~qIe~LkkelE~ 134 (444)
|+..+..|++.|++|+.++..
T Consensus 10 AERsV~KLek~ID~LEdeL~~ 30 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDELYA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 285
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=31.25 E-value=40 Score=29.15 Aligned_cols=21 Identities=19% Similarity=0.567 Sum_probs=8.6
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 013359 41 SPLKIELDQLKSKIRSLESHI 61 (444)
Q Consensus 41 ~~l~~eL~~l~~ki~~Lesqi 61 (444)
.++..+|.+|+.++.+|+.++
T Consensus 19 ~~~~~~l~~L~~~~~~L~~~l 39 (168)
T 1buu_A 19 RAIEVKLANMEAEINTLKSKL 39 (168)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 286
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=30.45 E-value=2.1e+02 Score=22.97 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 013359 153 ISDLSAKLEKLQKIND 168 (444)
Q Consensus 153 leEle~kveeLe~~~e 168 (444)
...+...++.|..++.
T Consensus 57 ~~~L~~e~~~L~~e~~ 72 (90)
T 2wt7_B 57 KTQLIQQVEQLKQEVS 72 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 287
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=30.38 E-value=88 Score=24.18 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARA 146 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEae~ 146 (444)
.|-+=|..|..+++.|+.+++.+..+...|+.++
T Consensus 44 ~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 44 KATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544444444444444433
No 288
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=30.28 E-value=1.1e+02 Score=19.56 Aligned_cols=17 Identities=35% Similarity=0.325 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013359 123 KQIDNLKKESEKQQKEK 139 (444)
Q Consensus 123 ~qIe~LkkelE~~~~e~ 139 (444)
.+|..|++++..++.++
T Consensus 9 qeiaalkkeiaalkfei 25 (33)
T 4dzn_A 9 QEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333343333333333
No 289
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=30.26 E-value=5.2e+02 Score=27.38 Aligned_cols=11 Identities=36% Similarity=0.401 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 013359 44 KIELDQLKSKI 54 (444)
Q Consensus 44 ~~eL~~l~~ki 54 (444)
...++.+..+.
T Consensus 437 ~~~~~~~~~~Y 447 (592)
T 1f5n_A 437 VQKLQDLKKKY 447 (592)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 290
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=30.04 E-value=1.2e+02 Score=24.51 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q 013359 121 LEKQIDNLKKESEKQ 135 (444)
Q Consensus 121 Le~qIe~LkkelE~~ 135 (444)
.+++|.+|+.+|+..
T Consensus 73 YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 73 YEEEIKHLKLGLEQR 87 (92)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 456666666666543
No 291
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=29.37 E-value=2e+02 Score=22.26 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013359 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (444)
Q Consensus 141 ~LEae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~kak~E~~ 196 (444)
+-..+...++..+.++..-..+|...+.++...++.++..+..+..-......++.
T Consensus 18 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~ 73 (83)
T 1sfc_B 18 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556667777777777777777777777777777777777776666665554
No 292
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=29.26 E-value=4.5e+02 Score=26.32 Aligned_cols=6 Identities=17% Similarity=0.141 Sum_probs=2.4
Q ss_pred hccchH
Q 013359 389 LATKEL 394 (444)
Q Consensus 389 ~a~~~~ 394 (444)
+.|++.
T Consensus 281 ~~Nr~~ 286 (365)
T 1gqe_A 281 HKNKDQ 286 (365)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344443
No 293
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=29.09 E-value=1.1e+02 Score=22.36 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 013359 50 LKSKIRSLESHIDEKTQELKG 70 (444)
Q Consensus 50 l~~ki~~Lesqi~ele~eI~~ 70 (444)
++..|..+++++..+..++..
T Consensus 5 ~q~~i~~le~el~~~r~e~~~ 25 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVAR 25 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 294
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=28.90 E-value=1.6e+02 Score=30.62 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=35.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 013359 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQ-----KEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 39 ~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~-----~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
++...++....|...+..+..++++....++..++-|.. .-..|.+....|..|+..+..++
T Consensus 48 a~v~VQ~NV~~Ld~N~~~~~~~~ne~~~~Vn~I~~~L~~~GD~~vi~qI~~n~~dI~~Lk~~~~~~~ 114 (487)
T 2bsg_A 48 PTVSVLRNVEVLDKNIGILKTSLETANSDIKTIQGILDVSGDIEALAQIGINKKDISDLKTLTSEHT 114 (487)
T ss_pred chhhhhhhHHHHhhhHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHhhHHHHHHHhcchhhhh
Confidence 334456666777777777777777776666666654443 23344444445555555444443
No 295
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=28.79 E-value=2.6e+02 Score=23.41 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013359 48 DQLKSKIRSLESHIDEKTQE 67 (444)
Q Consensus 48 ~~l~~ki~~Lesqi~ele~e 67 (444)
.+|+.+|...++++....+.
T Consensus 25 eeLq~Ei~~~E~QL~~ArQK 44 (113)
T 4fi5_A 25 EELQREINAHEGQLVIARQK 44 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 296
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=28.71 E-value=1.7e+02 Score=21.34 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013359 116 ARADELEKQIDNLKKESEKQQK 137 (444)
Q Consensus 116 ~~i~eLe~qIe~LkkelE~~~~ 137 (444)
..|..++.++..++.+.+.+..
T Consensus 7 ~~i~~le~el~~~r~e~~~q~~ 28 (59)
T 1gk6_A 7 DKVEELLSKNYHLENEVARLKK 28 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 297
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=28.09 E-value=2.1e+02 Score=22.08 Aligned_cols=52 Identities=15% Similarity=0.269 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (444)
Q Consensus 46 eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~ 97 (444)
.|+.|...+..|..-=..+..+|+.-..-|..++.........|.....++.
T Consensus 20 ~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~ 71 (82)
T 2nps_D 20 QLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLA 71 (82)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555444444444444444444444333333
No 298
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=27.98 E-value=2.1e+02 Score=22.07 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 162 KLQKINDEQKSKIRKTERALKVAEEEMM 189 (444)
Q Consensus 162 eLe~~~eeqekqI~elE~~Lq~~Eeel~ 189 (444)
.+..+++++...|+.+......+...+.
T Consensus 37 ~Ig~El~~Qn~lLd~l~~~~d~~~~~L~ 64 (82)
T 2nps_D 37 RIGGELEEQAVMLEDFSHELESTQSRLD 64 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444433333333
No 299
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A
Probab=27.95 E-value=2.5e+02 Score=23.09 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 013359 151 KKISDLSAKLEKLQKI 166 (444)
Q Consensus 151 kkleEle~kveeLe~~ 166 (444)
.+++|+-++.=.++.+
T Consensus 76 d~~~~~~~~~~~~~~~ 91 (107)
T 2wps_A 76 DKIEEILSKIYHIENE 91 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 300
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=27.95 E-value=4.1e+02 Score=25.50 Aligned_cols=18 Identities=6% Similarity=0.126 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013359 148 EAEKKISDLSAKLEKLQK 165 (444)
Q Consensus 148 elEkkleEle~kveeLe~ 165 (444)
+++.++++++..++.++.
T Consensus 230 ~l~~~i~~l~~~l~~~~~ 247 (357)
T 3rrk_A 230 RMKERARLAPEELVGIRE 247 (357)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 301
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A
Probab=27.93 E-value=4.4e+02 Score=25.88 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 013359 43 LKIELDQLKSKIRSLESHIDEKTQELKGKD 72 (444)
Q Consensus 43 l~~eL~~l~~ki~~Lesqi~ele~eI~~k~ 72 (444)
...||+.|..+...-+.++.+.++-+++..
T Consensus 131 s~eEL~~Lk~Ef~HHqeKv~eY~~LLe~~~ 160 (323)
T 2p01_A 131 SGEELDKLWREFLHHKEKVHEYNVLLETLS 160 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367888888888888888888877776654
No 302
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=27.84 E-value=6e+02 Score=27.40 Aligned_cols=36 Identities=11% Similarity=0.354 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 147 IEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (444)
Q Consensus 147 ~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq 182 (444)
..+..++.++...-+.|.........++++.....+
T Consensus 446 ~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~~~q 481 (863)
T 1sjj_A 446 PSVNARCQKICDQWDNLGALTQKRREALERTEKLLE 481 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555554444433
No 303
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=27.83 E-value=1.5e+02 Score=28.45 Aligned_cols=43 Identities=7% Similarity=0.186 Sum_probs=31.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 62 DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKET 104 (444)
Q Consensus 62 ~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s 104 (444)
.-.++.+.++...|...++.+.+.++.|+++-++|.++...+.
T Consensus 212 ~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~ 254 (268)
T 2yo3_A 212 TYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIA 254 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677777788888888888888888888888877764443
No 304
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=27.79 E-value=1.7e+02 Score=29.78 Aligned_cols=89 Identities=16% Similarity=0.243 Sum_probs=0.0
Q ss_pred cCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 013359 34 ASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDK 113 (444)
Q Consensus 34 ~~~~~~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s~~~~~~i~~ 113 (444)
+.+.....++..+.+.|-..+..+-.++..+..+++. +|...-.+|..+-++|++|..+|...+.-....
T Consensus 60 P~~~~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~---~i~~~V~~iN~l~~qIa~LN~qI~~~~~~~~g~------- 129 (463)
T 2d4y_A 60 AEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNI---AIGSSVAQINNYAKQIANLNDQISRMTGVGAGA------- 129 (463)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013359 114 AHARADELEKQIDNLKKESEKQ 135 (444)
Q Consensus 114 ae~~i~eLe~qIe~LkkelE~~ 135 (444)
.-.+|..|.+.|-.+|-.+
T Consensus 130 ---~~ndLlDqRD~ll~eLS~~ 148 (463)
T 2d4y_A 130 ---SPNDLLDQRDQLVSELNKI 148 (463)
T ss_dssp -----CHHHHHHHHHHHHHHHH
T ss_pred ---CchHhHHHHHHHHHHHHhh
No 305
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=26.88 E-value=2.8e+02 Score=25.92 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 144 ARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (444)
Q Consensus 144 ae~~elEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel~ka 191 (444)
.+.+.+.+++..++.++++.+.+...+.+.+.+..+++..+.+...+.
T Consensus 171 ~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 171 FRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444445555555555555555555566666555555555544443
No 306
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=26.69 E-value=4.2e+02 Score=26.38 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHh
Q 013359 55 RSLESHIDEKTQE 67 (444)
Q Consensus 55 ~~Lesqi~ele~e 67 (444)
..+..+..+++..
T Consensus 6 ~~~~~r~~el~~~ 18 (354)
T 3d5a_X 6 DRLEEEYRELEAL 18 (354)
T ss_dssp HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444333
No 307
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=26.45 E-value=2.3e+02 Score=22.94 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 013359 87 ERIVSLQKELSSLQKKET 104 (444)
Q Consensus 87 ~~I~eLq~kI~sLqkK~s 104 (444)
+-|.+...+|..+|+-..
T Consensus 32 qvikEIs~Kv~~Iqn~~L 49 (92)
T 1x4t_A 32 QIIGEISKKVAQIQNAGL 49 (92)
T ss_dssp HHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHhhCCCC
Confidence 344555556666665544
No 308
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=26.45 E-value=2.2e+02 Score=21.83 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 013359 121 LEKQIDNLKKESEKQQ 136 (444)
Q Consensus 121 Le~qIe~LkkelE~~~ 136 (444)
|+.++.+-+.+++.++
T Consensus 8 L~~kl~~Kq~EI~rLn 23 (74)
T 2q6q_A 8 LNFKLREKQNEIFELK 23 (74)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 309
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=26.44 E-value=46 Score=25.20 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVS 91 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~e 91 (444)
.+|..|..++...+...+++++++.-...+-++++.-+...+.++.+
T Consensus 12 ekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v~~ 58 (64)
T 3t97_C 12 EKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESVKE 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666666555555555555444444443
No 310
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=26.11 E-value=2.1e+02 Score=28.26 Aligned_cols=33 Identities=36% Similarity=0.321 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (444)
Q Consensus 125 Ie~LkkelE~~~~e~~~LEae~~elEkkleEle 157 (444)
|..+.++++..+.+.++++.++...|+..++.-
T Consensus 5 ~~~~~~e~~~~~~~~~~vq~kA~~~E~~Yn~~~ 37 (333)
T 4etp_B 5 IAALEKEIAALEKEIAALEKEISKQEKFYNDTY 37 (333)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555666666666665555533
No 311
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=25.98 E-value=5.4e+02 Score=26.21 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 013359 112 DKAHARADELEKQIDNLKKESEKQQKEKE------ALEARAIEAEKKISDLSAKLEKL--------QKINDEQKSKIRKT 177 (444)
Q Consensus 112 ~~ae~~i~eLe~qIe~LkkelE~~~~e~~------~LEae~~elEkkleEle~kveeL--------e~~~eeqekqI~el 177 (444)
...++++..|+.+=+.|+.........+. ..-..+.+++.-+.+.+..+..- ......+-++...+
T Consensus 168 ~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~QF~~Da~EaesWL~eke~~l~s~y~~D~g~d~~~~e~LLkkh~~l 247 (450)
T 3r6n_A 168 DKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKE 247 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccccCcCCCCHHHHHHHHHHHHHH
Confidence 34555566666555555544433333333 23334555555555554444332 12234566777778
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 013359 178 ERALKVAEEEMMRAKFEATSR 198 (444)
Q Consensus 178 E~~Lq~~Eeel~kak~E~~~~ 198 (444)
++.+..++..+..+..++...
T Consensus 248 e~~l~~~~~~I~~L~~qA~~l 268 (450)
T 3r6n_A 248 REKILEYKRQVQNLVNKSKKI 268 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888887777754
No 312
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=25.42 E-value=2.3e+02 Score=21.70 Aligned_cols=40 Identities=13% Similarity=0.363 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 149 AEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (444)
Q Consensus 149 lEkkleEle~kveeLe~~~eeqekqI~elE~~Lq~~Eeel 188 (444)
.....++.......+...+++....+...-...+..+.++
T Consensus 53 F~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~~ 92 (98)
T 3gwk_C 53 FEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADI 92 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555555555554433
No 313
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=25.10 E-value=3.5e+02 Score=28.97 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 72 DEVVAQKEKAIQDKSERIVSLQKELS 97 (444)
Q Consensus 72 ~~eIk~~e~~I~e~e~~I~eLq~kI~ 97 (444)
+....+.....++++.-|-++.+.|+
T Consensus 543 D~~~~~~~~~~n~le~~i~~~~~~l~ 568 (675)
T 3d2f_A 543 DKLVAETEDRKNTLEEYIYTLRGKLE 568 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666666666664
No 314
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.68 E-value=1.2e+02 Score=20.54 Aligned_cols=12 Identities=25% Similarity=0.119 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 013359 124 QIDNLKKESEKQ 135 (444)
Q Consensus 124 qIe~LkkelE~~ 135 (444)
||..|+..++.+
T Consensus 16 Qi~~l~~kl~~L 27 (38)
T 2l5g_A 16 QILKLEEKLLAL 27 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 315
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=24.45 E-value=1.1e+02 Score=23.70 Aligned_cols=16 Identities=38% Similarity=0.470 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 013359 85 KSERIVSLQKELSSLQ 100 (444)
Q Consensus 85 ~e~~I~eLq~kI~sLq 100 (444)
.+..|.+++.+|+.|+
T Consensus 27 ~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 27 AKGNISSLQGDVQALQ 42 (74)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhHHHH
Confidence 3334444444444443
No 316
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=24.20 E-value=85 Score=20.81 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013359 149 AEKKISDLSAKLEKLQK 165 (444)
Q Consensus 149 lEkkleEle~kveeLe~ 165 (444)
+|.+++++-.+-..|+.
T Consensus 6 LEdKvEeLl~~~~~L~~ 22 (34)
T 2bni_A 6 IEDKLEEILSKGHHICN 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHH
Confidence 33333333333333333
No 317
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=24.08 E-value=1.2e+02 Score=20.02 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013359 149 AEKKISDLSAKLEKLQK 165 (444)
Q Consensus 149 lEkkleEle~kveeLe~ 165 (444)
+|.+++++-++...++.
T Consensus 6 ledKvEel~~~~~~l~n 22 (34)
T 2r2v_A 6 VADKLEEVASKLYHNAN 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 33333333333333333
No 318
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.88 E-value=1.3e+02 Score=29.72 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=35.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (444)
Q Consensus 39 ~~~~l~~eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI 96 (444)
+-+++.+|++.++.++++++.+....++.-++.-+.+.+-...-+.++..|.++.+.|
T Consensus 4 ~~~~~~~e~~~~~~~~~~vq~kA~~~E~~Yn~~~dKmeqE~lrRRkLENSIdElKG~I 61 (333)
T 4etp_B 4 EIAALEKEIAALEKEIAALEKEISKQEKFYNDTYNTVCKELLRSRRLENSIIEQKGTM 61 (333)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcE
Confidence 3445667777777777777777777666666655555555555555566665555543
No 319
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=23.84 E-value=5e+02 Score=25.08 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013359 75 VAQKEKAIQDKSERIVSLQKELS 97 (444)
Q Consensus 75 Ik~~e~~I~e~e~~I~eLq~kI~ 97 (444)
|..+...++-....|.-++.++.
T Consensus 48 ~~~k~~a~~af~~~~~~f~~q~~ 70 (302)
T 2y3a_B 48 LQMKRTAIEAFNETIKIFEEQGQ 70 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443
No 320
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=23.37 E-value=2.4e+02 Score=28.20 Aligned_cols=15 Identities=7% Similarity=-0.055 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 013359 172 SKIRKTERALKVAEE 186 (444)
Q Consensus 172 kqI~elE~~Lq~~Ee 186 (444)
..+..++.++..++.
T Consensus 76 ~e~~~l~~~~~~le~ 90 (354)
T 3d5a_X 76 AEREALLARKEALEK 90 (354)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 321
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=23.33 E-value=2.2e+02 Score=20.85 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 154 SDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (444)
Q Consensus 154 eEle~kveeLe~~~eeqekqI~elE~~Lq~~ 184 (444)
.+++.+++.|+..+..+...|..+...+..+
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333
No 322
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=23.12 E-value=85 Score=27.63 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=18.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 60 HIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKET 104 (444)
Q Consensus 60 qi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~s 104 (444)
++..+...+++..+-+.++.....+-+++|.+++..|+++-.++.
T Consensus 73 kv~~L~~~~~~~~~i~~~Lk~~k~k~~~~v~~~~~~i~~~i~kIK 117 (148)
T 3gn4_A 73 KVGTLKKRLDKFNEVVSALKDGKQEMSKQVKDLEISIDALMAKIK 117 (148)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444555554455556677777777776665554
No 323
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=23.04 E-value=1.7e+02 Score=22.73 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLKKESEKQQKEKEALEA 144 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEa 144 (444)
.|.+=|..|+.+...+..+++.+..+...|..
T Consensus 44 kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 44 KAKLHIKKLEDSDRKAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443333
No 324
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=22.79 E-value=4.5e+02 Score=24.29 Aligned_cols=32 Identities=9% Similarity=0.093 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 154 SDLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (444)
Q Consensus 154 eEle~kveeLe~~~eeqekqI~elE~~Lq~~E 185 (444)
+++...+..++.........+-.+=+.++.++
T Consensus 191 ~~Y~~~v~~~n~~~~~~~~~~p~~~~~~Q~le 222 (290)
T 3i2w_A 191 EKYEQAIAEITKYNSVYIEDMTSVFEKCQTFE 222 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 325
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=22.78 E-value=2.7e+02 Score=21.53 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 013359 117 RADELEKQIDNLK 129 (444)
Q Consensus 117 ~i~eLe~qIe~Lk 129 (444)
+|.++...|+.|+
T Consensus 22 EI~EID~Ki~nL~ 34 (72)
T 2xu6_A 22 EIRDIEVEVENLR 34 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 326
>2ynz_A General control protein GCN4, putative inner MEMB protein; membrane protein, DALL domain, DALL2, trimeric autotransport adhesin, TAA; 1.40A {Saccharomyces cerevisiae} PDB: 1uo2_A 1gcl_A 2ccn_A 1uo0_A 1unz_A 1uny_A 2bni_A* 1u9h_A*
Probab=22.77 E-value=2.3e+02 Score=24.94 Aligned_cols=44 Identities=14% Similarity=0.290 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (444)
Q Consensus 56 ~Lesqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sL 99 (444)
+++.+|+++-++|=-.+.+|..+-.++-..+..|......|..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i~~~GSQL~~tn~~Va~nt~~ia~v 46 (154)
T 2ynz_A 3 QIEDKIEEILSKIYHIENEIARIKKLIYETNQKVDQNTSAIADI 46 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHhccchhhh
Confidence 34455555555554444444444444444444444444444444
No 327
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=22.53 E-value=2.3e+02 Score=20.67 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 013359 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKE 79 (444)
Q Consensus 46 eL~~l~~ki~~Lesqi~ele~eI~~k~~eIk~~e 79 (444)
.|+.+...+..|..-=..+..+|+....-|..++
T Consensus 10 ~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~ 43 (65)
T 1gl2_D 10 GLDALSSIISRQKQMGQEIGNELDEQNEIIDDLA 43 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4555555555555444444444444333333333
No 328
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=22.46 E-value=34 Score=21.45 Aligned_cols=16 Identities=13% Similarity=0.470 Sum_probs=10.5
Q ss_pred ccHHHHHHHHHHHHHH
Q 013359 349 PYTKKVVRAYGKFLKS 364 (444)
Q Consensus 349 Py~~~~~~~~~~~~~~ 364 (444)
||+++++.++..++++
T Consensus 1 P~~e~mr~Q~~~lveK 16 (26)
T 1oeg_A 1 PLVEDMQRQWAGLVEK 16 (26)
T ss_dssp CHHHHTTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH
Confidence 6777777776666643
No 329
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=22.44 E-value=2.6e+02 Score=24.21 Aligned_cols=71 Identities=14% Similarity=0.116 Sum_probs=40.2
Q ss_pred HHHHHhhhhhhHHhHHHhhhc------cc-chhHHHHhhHHHHHHHHhhhhcchhHHhhhhhcchhHHHHhhhhhhHHHH
Q 013359 259 VETIKAKWIPAVKEQWVVFTT------NV-EPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQ 331 (444)
Q Consensus 259 ~~~~~~k~~p~~~~~w~~~~~------~~-~p~ve~~k~k~~p~~~~~r~~~~p~~~~~~~~~~Py~~e~k~~~~py~~~ 331 (444)
..-+..|++.+|++.+..+-. ++ -|+++++.+-..-..+++...+-| ..++...+|-+..+++..+-.+.+
T Consensus 21 ~~eI~~KLv~Im~~r~~~~l~~Wd~k~pvpS~~m~tl~Ke~~kLH~~Ls~~LP~--~~v~~Im~~Vf~~fk~~l~~~~~~ 98 (141)
T 3n1e_A 21 IAEISAKLVAIMDSLFDKLLSKYEVKAPVPSPCFRNICKQMTKMHEAIFDLLPE--EQTQMLFLRINASYKLHLKKQLSH 98 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCSSSSCHHHHHHHHHHHHHHHHHTTTSCH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334667777777777664332 22 356666655555555554444444 345555666666666666666553
No 330
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=22.16 E-value=2.9e+02 Score=29.02 Aligned_cols=30 Identities=10% Similarity=0.044 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013359 74 VVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (444)
Q Consensus 74 eIk~~e~~I~e~e~~I~eLq~kI~sLqkK~ 103 (444)
...++....++.+.-|-++...++++..++
T Consensus 528 ~~~~~~~~~n~~e~~~~~~~~~l~~~~~~~ 557 (605)
T 2kho_A 528 KFDELVQTRNQGDHLLHSTRKQVEEAGDKL 557 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 334444555556666666666665544333
No 331
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=21.98 E-value=85 Score=22.85 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013359 44 KIELDQLKSKIRSLESHIDEKTQELKG 70 (444)
Q Consensus 44 ~~eL~~l~~ki~~Lesqi~ele~eI~~ 70 (444)
...+++|..++..|+..+..+.+.|.+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344666777777777777766665543
No 332
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=21.89 E-value=2.5e+02 Score=20.83 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 013359 86 SERIVSLQKELSSLQ 100 (444)
Q Consensus 86 e~~I~eLq~kI~sLq 100 (444)
++.|++|+.++..++
T Consensus 5 ~~~~~~le~kl~~lE 19 (65)
T 3m0d_C 5 EKLLAELEGKLRVFE 19 (65)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555554443
No 333
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=21.82 E-value=98 Score=33.86 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 013359 45 IELDQLKSKIRSLESHIDEKTQELKGKDE 73 (444)
Q Consensus 45 ~eL~~l~~ki~~Lesqi~ele~eI~~k~~ 73 (444)
+.|-++..+|++++.+.+++..+|+....
T Consensus 10 ~dl~~i~~~i~~~~~~r~~l~~~~~~~~~ 38 (706)
T 3fhn_A 10 DDLLNINDRIKQVQNERNELASKLQNLKQ 38 (706)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44666777888887777777777766554
No 334
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=21.62 E-value=3.4e+02 Score=22.27 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013359 172 SKIRKTERALKVAEEEMMRAKFE 194 (444)
Q Consensus 172 kqI~elE~~Lq~~Eeel~kak~E 194 (444)
.++.+++..+..+..+-.++..|
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 335
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=21.61 E-value=4e+02 Score=23.13 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 013359 78 KEKAIQDKSERIVSL 92 (444)
Q Consensus 78 ~e~~I~e~e~~I~eL 92 (444)
....|+++...|.+|
T Consensus 52 NqadI~~L~~dI~dL 66 (157)
T 2qih_A 52 NQADIQLHDKKITNL 66 (157)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 333333333333333
No 336
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=21.56 E-value=1.5e+02 Score=19.73 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013359 167 NDEQKSKIRKTERALKVAEEE 187 (444)
Q Consensus 167 ~eeqekqI~elE~~Lq~~Eee 187 (444)
+...++.|++++++...++++
T Consensus 9 n~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 337
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.48 E-value=2.5e+02 Score=22.08 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 113 KAHARADELEKQIDNLKKESEKQQKEKEALEA 144 (444)
Q Consensus 113 ~ae~~i~eLe~qIe~LkkelE~~~~e~~~LEa 144 (444)
.|-+=|..|+.+...+..+++.+..+...|..
T Consensus 49 ~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~ 80 (88)
T 1nkp_A 49 KATAYILSVQAEEQKLISEEDLLRKRREQLKH 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333333333
No 338
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=21.06 E-value=4.1e+02 Score=23.08 Aligned_cols=64 Identities=11% Similarity=0.136 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 114 AHARADELEKQIDNLKKESEKQ-------QKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKT 177 (444)
Q Consensus 114 ae~~i~eLe~qIe~LkkelE~~-------~~e~~~LEae~~elEkkleEle~kveeLe~~~eeqekqI~el 177 (444)
+-+++..+..+++.+-.++... -..+..++.++..+..-.......++++-.-.++...++..+
T Consensus 92 ~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~eL~~l 162 (175)
T 4abx_A 92 LQNELRAALESVQAIAGELRDVAEGSAADPEALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEELAGL 162 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333 333445555555554444444434444444444444444443
No 339
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=20.92 E-value=3.6e+02 Score=22.39 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 58 ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (444)
Q Consensus 58 esqi~ele~eI~~k~~eIk~~e~~I~e~e~~I~eLq~kI~ 97 (444)
.+-+++.+.++.-..+-|..+.+++-.++-.|.+|+..+.
T Consensus 66 ~~aldekekqlavaneiirslsdevmrneiritslqgdlt 105 (142)
T 1pl5_A 66 ASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLT 105 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhHHHHHhhheeeeeeccchh
Confidence 3344444444444444455555555555555555555554
No 340
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=20.76 E-value=1.5e+02 Score=26.29 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=16.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (444)
Q Consensus 68 I~~k~~eIk~~e~~I~e~e~~I~eLq~kI~sLq 100 (444)
++.++.|-......|+++...+++|..+...++
T Consensus 7 ~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafk 39 (155)
T 2aze_A 7 CQNLEVERQRRLERIKQKQSQLQELILQQIAFK 39 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555444443
No 341
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.53 E-value=1.4e+02 Score=30.45 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=10.9
Q ss_pred hhcchhHHHHhhhhhhHHHHHHh
Q 013359 312 EVVDPYFQEAKKFSKPYIDQVAT 334 (444)
Q Consensus 312 ~~~~Py~~e~k~~~~py~~~a~~ 334 (444)
+.++.|+-+.-+.++-.|+.|+.
T Consensus 241 ~l~~~~~Ge~e~~ir~lF~~A~~ 263 (428)
T 4b4t_K 241 EFVHKYLGEGPRMVRDVFRLARE 263 (428)
T ss_dssp GTCCSSCSHHHHHHHHHHHHHHH
T ss_pred hhhccccchhHHHHHHHHHHHHH
Confidence 34445544444444455554443
No 342
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=20.50 E-value=3.4e+02 Score=21.94 Aligned_cols=10 Identities=20% Similarity=0.122 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 013359 81 AIQDKSERIV 90 (444)
Q Consensus 81 ~I~e~e~~I~ 90 (444)
.|...+..|+
T Consensus 11 li~t~s~niq 20 (97)
T 1hs7_A 11 LIETFAEQSR 20 (97)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 343
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=20.22 E-value=2.8e+02 Score=24.51 Aligned_cols=27 Identities=7% Similarity=0.032 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013359 165 KINDEQKSKIRKTERALKVAEEEMMRA 191 (444)
Q Consensus 165 ~~~eeqekqI~elE~~Lq~~Eeel~ka 191 (444)
..+...+..++++..+...++.-+.|-
T Consensus 19 ~rI~~K~~~LqeL~~Q~vafknLv~RN 45 (155)
T 2aze_A 19 ERIKQKQSQLQELILQQIAFKNLVQRN 45 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444443
Done!