Query 013361
Match_columns 444
No_of_seqs 398 out of 3728
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 09:08:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t4n_C Nuclear protein SNF4; C 100.0 2.1E-34 7.2E-39 281.9 25.8 294 35-425 21-321 (323)
2 3kh5_A Protein MJ1225; AMPK, A 100.0 5E-34 1.7E-38 272.9 24.8 262 53-422 10-279 (280)
3 3ddj_A CBS domain-containing p 100.0 5.3E-33 1.8E-37 268.5 20.9 264 41-424 17-285 (296)
4 2qrd_G Protein C1556.08C; AMPK 100.0 9.5E-32 3.2E-36 264.2 30.0 296 35-427 13-318 (334)
5 2v8q_E 5'-AMP-activated protei 100.0 3.5E-32 1.2E-36 267.0 24.7 301 32-425 23-324 (330)
6 2yzq_A Putative uncharacterize 100.0 4.2E-31 1.4E-35 253.1 17.1 245 54-425 8-280 (282)
7 3kh5_A Protein MJ1225; AMPK, A 99.9 8.8E-24 3E-28 201.6 20.1 186 215-424 12-205 (280)
8 3ddj_A CBS domain-containing p 99.9 7.4E-24 2.5E-28 204.3 18.7 193 200-423 17-213 (296)
9 3t4n_C Nuclear protein SNF4; C 99.9 2.8E-23 9.6E-28 202.8 15.9 222 201-443 28-263 (323)
10 2yzq_A Putative uncharacterize 99.9 5E-22 1.7E-26 189.8 13.4 177 204-419 2-179 (282)
11 2qrd_G Protein C1556.08C; AMPK 99.9 4.5E-21 1.6E-25 188.0 19.5 207 202-424 21-243 (334)
12 2v8q_E 5'-AMP-activated protei 99.9 6.2E-21 2.1E-25 186.7 18.3 204 202-424 34-251 (330)
13 4esy_A CBS domain containing m 99.8 4.4E-20 1.5E-24 163.3 10.9 129 277-425 16-163 (170)
14 3lhh_A CBS domain protein; str 99.8 4.3E-19 1.5E-23 157.3 14.4 130 276-430 39-170 (172)
15 3i8n_A Uncharacterized protein 99.8 2.1E-18 7E-23 145.4 13.1 126 276-425 3-130 (130)
16 3hf7_A Uncharacterized CBS-dom 99.8 2E-18 6.7E-23 145.7 11.8 126 279-425 2-128 (130)
17 3k6e_A CBS domain protein; str 99.8 6.7E-19 2.3E-23 153.6 9.1 129 277-425 13-143 (156)
18 3nqr_A Magnesium and cobalt ef 99.8 1.6E-18 5.4E-23 145.5 10.7 123 279-425 3-127 (127)
19 3lfr_A Putative metal ION tran 99.8 8.9E-19 3E-23 149.0 9.2 130 279-431 3-134 (136)
20 3lv9_A Putative transporter; C 99.8 7.2E-18 2.4E-22 145.3 13.7 125 276-425 20-146 (148)
21 3jtf_A Magnesium and cobalt ef 99.8 4.2E-18 1.4E-22 143.4 11.3 124 277-425 3-127 (129)
22 3l2b_A Probable manganase-depe 99.7 1.9E-17 6.5E-22 155.1 15.3 193 202-423 6-243 (245)
23 4esy_A CBS domain containing m 99.7 2.2E-18 7.6E-23 152.3 8.4 131 201-343 16-162 (170)
24 3kpb_A Uncharacterized protein 99.7 1.3E-17 4.4E-22 138.5 12.1 119 280-424 2-120 (122)
25 2nyc_A Nuclear protein SNF4; b 99.7 6E-17 2E-21 138.3 16.3 137 277-425 6-142 (144)
26 3oco_A Hemolysin-like protein 99.7 4.6E-18 1.6E-22 147.5 9.2 131 277-431 18-150 (153)
27 2p9m_A Hypothetical protein MJ 99.7 5.1E-17 1.8E-21 137.9 14.9 125 277-424 6-136 (138)
28 3ocm_A Putative membrane prote 99.7 2.2E-17 7.7E-22 146.4 12.3 131 277-432 34-165 (173)
29 2ef7_A Hypothetical protein ST 99.7 6.1E-17 2.1E-21 136.6 14.3 123 278-424 3-125 (133)
30 2rih_A Conserved protein with 99.7 6.7E-17 2.3E-21 137.9 14.0 123 278-424 4-128 (141)
31 2yzi_A Hypothetical protein PH 99.7 1.2E-16 4.3E-21 135.6 15.6 126 277-426 5-131 (138)
32 3gby_A Uncharacterized protein 99.7 3.4E-17 1.2E-21 137.4 11.6 124 277-424 3-126 (128)
33 3fhm_A Uncharacterized protein 99.7 3.3E-17 1.1E-21 143.9 12.0 135 273-428 18-154 (165)
34 3k6e_A CBS domain protein; str 99.7 3.9E-17 1.3E-21 142.3 11.6 127 203-342 15-141 (156)
35 1y5h_A Hypothetical protein RV 99.7 4E-17 1.4E-21 137.7 10.9 125 277-424 6-131 (133)
36 3lqn_A CBS domain protein; csg 99.7 5E-17 1.7E-21 140.2 11.7 130 275-424 11-143 (150)
37 3lv9_A Putative transporter; C 99.7 1.5E-16 5.2E-21 136.9 14.7 126 199-342 19-144 (148)
38 1pbj_A Hypothetical protein; s 99.7 1.2E-16 4.2E-21 133.0 13.1 121 280-424 2-122 (125)
39 4gqw_A CBS domain-containing p 99.7 1E-16 3.5E-21 138.1 13.1 130 278-425 4-144 (152)
40 3oi8_A Uncharacterized protein 99.7 3.8E-17 1.3E-21 142.2 10.3 119 276-419 35-155 (156)
41 3kxr_A Magnesium transporter, 99.7 1.1E-16 3.8E-21 145.9 13.7 133 277-437 52-187 (205)
42 1vr9_A CBS domain protein/ACT 99.7 9.6E-17 3.3E-21 147.2 12.8 163 202-406 12-174 (213)
43 2o16_A Acetoin utilization pro 99.7 1.6E-16 5.6E-21 138.7 13.5 127 278-424 4-135 (160)
44 3kpb_A Uncharacterized protein 99.7 2.7E-16 9.2E-21 130.4 13.9 119 204-343 2-120 (122)
45 3hf7_A Uncharacterized CBS-dom 99.7 1.7E-16 5.9E-21 133.7 12.7 125 203-342 2-126 (130)
46 3ctu_A CBS domain protein; str 99.7 4.1E-17 1.4E-21 141.7 9.0 134 276-429 12-147 (156)
47 2uv4_A 5'-AMP-activated protei 99.7 2.5E-16 8.7E-21 136.2 13.9 122 293-424 30-151 (152)
48 3fv6_A YQZB protein; CBS domai 99.7 2.8E-16 9.7E-21 137.0 14.1 129 276-424 14-144 (159)
49 3k2v_A Putative D-arabinose 5- 99.7 3.6E-16 1.2E-20 134.8 14.3 121 278-420 27-148 (149)
50 1o50_A CBS domain-containing p 99.7 4.9E-16 1.7E-20 135.2 15.1 128 277-425 14-154 (157)
51 2emq_A Hypothetical conserved 99.7 3.6E-16 1.2E-20 135.7 14.1 132 276-427 8-142 (157)
52 3lhh_A CBS domain protein; str 99.7 3.6E-16 1.2E-20 138.3 14.2 128 198-343 37-164 (172)
53 3i8n_A Uncharacterized protein 99.7 1.2E-16 4.2E-21 134.4 10.6 126 200-342 3-128 (130)
54 2rc3_A CBS domain; in SITU pro 99.7 3.4E-16 1.2E-20 132.4 13.2 123 280-425 7-132 (135)
55 3jtf_A Magnesium and cobalt ef 99.7 4.1E-16 1.4E-20 131.1 13.1 123 201-342 3-125 (129)
56 2ef7_A Hypothetical protein ST 99.7 6.5E-16 2.2E-20 130.2 14.3 122 202-342 3-124 (133)
57 3nqr_A Magnesium and cobalt ef 99.7 2.7E-16 9.1E-21 131.8 11.5 124 202-342 2-125 (127)
58 4fry_A Putative signal-transdu 99.7 4.6E-16 1.6E-20 135.2 13.4 128 279-428 7-139 (157)
59 3lfr_A Putative metal ION tran 99.7 3.1E-16 1.1E-20 133.1 11.7 125 202-342 2-126 (136)
60 2pfi_A Chloride channel protei 99.7 8.7E-16 3E-20 134.1 14.8 135 277-424 11-147 (164)
61 3oco_A Hemolysin-like protein 99.7 2.3E-16 7.7E-21 136.8 10.8 126 200-343 17-143 (153)
62 3sl7_A CBS domain-containing p 99.7 1.7E-16 5.8E-21 140.9 10.2 128 279-424 4-156 (180)
63 1pvm_A Conserved hypothetical 99.7 6E-16 2E-20 138.4 13.4 126 278-424 8-133 (184)
64 3gby_A Uncharacterized protein 99.7 4.3E-16 1.5E-20 130.6 11.6 122 202-342 4-125 (128)
65 1yav_A Hypothetical protein BS 99.7 4.9E-16 1.7E-20 135.4 12.2 130 276-425 11-143 (159)
66 2rih_A Conserved protein with 99.7 1E-15 3.5E-20 130.5 13.8 122 202-342 4-127 (141)
67 3lqn_A CBS domain protein; csg 99.7 7.4E-16 2.5E-20 132.8 13.0 129 202-342 14-142 (150)
68 2yzi_A Hypothetical protein PH 99.7 2.1E-15 7.2E-20 127.9 14.9 125 200-343 4-129 (138)
69 3fhm_A Uncharacterized protein 99.7 1.6E-15 5.3E-20 133.1 14.5 133 197-343 18-150 (165)
70 2p9m_A Hypothetical protein MJ 99.6 1.2E-15 4.2E-20 129.3 12.8 125 200-342 5-135 (138)
71 1pbj_A Hypothetical protein; s 99.6 2.5E-15 8.6E-20 125.0 13.9 121 204-343 2-122 (125)
72 3l2b_A Probable manganase-depe 99.6 7.8E-16 2.7E-20 144.1 11.6 226 43-341 6-242 (245)
73 4gqw_A CBS domain-containing p 99.6 8.7E-16 3E-20 132.2 10.7 133 202-343 4-143 (152)
74 3fv6_A YQZB protein; CBS domai 99.6 3E-15 1E-19 130.5 14.0 125 201-342 15-143 (159)
75 1vr9_A CBS domain protein/ACT 99.6 1.4E-15 4.8E-20 139.4 12.3 122 277-426 11-132 (213)
76 2j9l_A Chloride channel protei 99.6 7.4E-16 2.5E-20 137.5 10.2 128 277-424 9-165 (185)
77 3k2v_A Putative D-arabinose 5- 99.6 1.5E-15 5.2E-20 130.8 11.5 121 203-339 28-148 (149)
78 1y5h_A Hypothetical protein RV 99.6 1.5E-15 5.1E-20 128.0 10.7 125 200-342 5-130 (133)
79 2o16_A Acetoin utilization pro 99.6 3.3E-15 1.1E-19 130.4 13.0 129 202-342 4-134 (160)
80 2yvy_A MGTE, Mg2+ transporter 99.6 2.6E-15 8.7E-20 143.4 12.8 133 277-437 133-270 (278)
81 2rc3_A CBS domain; in SITU pro 99.6 1.2E-14 3.9E-19 122.9 15.3 126 203-343 6-131 (135)
82 1yav_A Hypothetical protein BS 99.6 3.3E-15 1.1E-19 130.1 12.1 131 200-342 11-141 (159)
83 2oux_A Magnesium transporter; 99.6 1.5E-15 5.1E-20 145.6 10.8 132 277-436 135-271 (286)
84 2emq_A Hypothetical conserved 99.6 5.6E-15 1.9E-19 128.1 13.4 131 200-342 8-138 (157)
85 3ctu_A CBS domain protein; str 99.6 2.1E-15 7.2E-20 130.9 10.5 128 202-342 14-141 (156)
86 3ocm_A Putative membrane prote 99.6 4.3E-15 1.5E-19 131.6 12.4 125 200-343 33-157 (173)
87 3oi8_A Uncharacterized protein 99.6 1.6E-15 5.5E-20 131.9 9.4 121 200-338 35-155 (156)
88 1pvm_A Conserved hypothetical 99.6 7.2E-15 2.5E-19 131.3 13.8 124 203-342 9-132 (184)
89 2nyc_A Nuclear protein SNF4; b 99.6 4E-15 1.4E-19 126.9 11.4 126 202-342 7-140 (144)
90 2uv4_A 5'-AMP-activated protei 99.6 3.3E-15 1.1E-19 129.1 10.9 116 215-342 29-150 (152)
91 3sl7_A CBS domain-containing p 99.6 3.1E-15 1.1E-19 132.7 10.7 131 203-342 4-155 (180)
92 2pfi_A Chloride channel protei 99.6 1.1E-14 3.7E-19 127.1 13.6 129 201-342 11-146 (164)
93 3kxr_A Magnesium transporter, 99.6 1.5E-14 5.2E-19 131.7 14.3 121 199-342 50-173 (205)
94 4fry_A Putative signal-transdu 99.6 2E-14 6.9E-19 124.8 14.4 127 203-343 7-135 (157)
95 2d4z_A Chloride channel protei 99.6 8.4E-15 2.9E-19 137.1 12.5 140 277-424 11-246 (250)
96 1o50_A CBS domain-containing p 99.6 1.1E-14 3.7E-19 126.6 11.9 130 200-342 13-152 (157)
97 2j9l_A Chloride channel protei 99.6 2.4E-14 8.1E-19 127.6 13.5 135 200-342 8-164 (185)
98 2d4z_A Chloride channel protei 99.5 5.5E-14 1.9E-18 131.5 13.1 135 200-342 10-245 (250)
99 3pc3_A CG1753, isoform A; CBS, 99.5 4.9E-14 1.7E-18 146.4 11.6 127 276-426 381-513 (527)
100 2oux_A Magnesium transporter; 99.5 1.6E-13 5.4E-18 131.5 12.9 122 198-342 132-258 (286)
101 2zy9_A Mg2+ transporter MGTE; 99.5 8.1E-14 2.8E-18 142.6 10.9 121 277-425 153-278 (473)
102 3pc3_A CG1753, isoform A; CBS, 99.5 1.5E-13 5E-18 142.8 12.4 127 199-343 380-511 (527)
103 2yvy_A MGTE, Mg2+ transporter 99.5 4.1E-13 1.4E-17 128.0 13.7 121 200-343 132-257 (278)
104 3org_A CMCLC; transporter, tra 99.4 2.7E-14 9.3E-19 151.2 3.4 131 278-427 452-628 (632)
105 3usb_A Inosine-5'-monophosphat 99.4 4E-12 1.4E-16 130.8 13.5 116 288-424 118-234 (511)
106 3usb_A Inosine-5'-monophosphat 99.3 1.8E-11 6.3E-16 125.9 17.6 156 215-405 121-278 (511)
107 2zy9_A Mg2+ transporter MGTE; 99.3 4.4E-12 1.5E-16 129.7 12.3 122 198-342 150-276 (473)
108 3org_A CMCLC; transporter, tra 99.3 1.3E-12 4.4E-17 138.4 8.1 132 201-342 451-624 (632)
109 1zfj_A Inosine monophosphate d 99.3 8.1E-12 2.8E-16 128.7 13.3 115 288-424 95-211 (491)
110 4fxs_A Inosine-5'-monophosphat 99.3 5.2E-13 1.8E-17 137.0 3.6 116 288-424 94-209 (496)
111 1me8_A Inosine-5'-monophosphat 99.3 2E-13 7E-18 140.6 0.5 117 289-425 103-222 (503)
112 1me8_A Inosine-5'-monophosphat 99.2 7.8E-13 2.7E-17 136.2 0.3 152 215-401 105-260 (503)
113 4avf_A Inosine-5'-monophosphat 99.2 7.1E-13 2.4E-17 135.9 0.0 115 288-424 93-207 (490)
114 1vrd_A Inosine-5'-monophosphat 99.2 8.7E-13 3E-17 136.0 0.2 117 288-425 100-216 (494)
115 4af0_A Inosine-5'-monophosphat 99.2 1.6E-12 5.3E-17 130.7 0.0 110 293-424 147-258 (556)
116 1zfj_A Inosine monophosphate d 99.2 1.4E-10 4.7E-15 119.4 13.5 118 205-343 92-211 (491)
117 4fxs_A Inosine-5'-monophosphat 99.2 1.9E-11 6.6E-16 125.3 6.1 112 215-343 97-209 (496)
118 4avf_A Inosine-5'-monophosphat 99.1 1.6E-11 5.5E-16 125.8 3.6 117 205-343 90-207 (490)
119 1jcn_A Inosine monophosphate d 99.1 3.2E-12 1.1E-16 132.3 -4.7 123 280-424 109-233 (514)
120 1vrd_A Inosine-5'-monophosphat 99.1 3.8E-11 1.3E-15 123.7 3.1 118 205-343 97-215 (494)
121 3ghd_A A cystathionine beta-sy 99.0 6.8E-10 2.3E-14 82.4 7.9 64 294-361 2-65 (70)
122 2cu0_A Inosine-5'-monophosphat 99.0 3.3E-11 1.1E-15 123.7 0.2 110 288-423 98-207 (486)
123 4af0_A Inosine-5'-monophosphat 99.0 3.6E-11 1.2E-15 120.9 0.2 110 215-342 146-257 (556)
124 2cu0_A Inosine-5'-monophosphat 98.9 1.3E-10 4.3E-15 119.4 1.3 158 215-414 101-258 (486)
125 1jcn_A Inosine monophosphate d 98.9 7.2E-11 2.4E-15 122.1 -2.2 121 205-343 110-233 (514)
126 3ghd_A A cystathionine beta-sy 98.9 3.5E-09 1.2E-13 78.5 7.4 69 217-297 2-70 (70)
127 3fio_A A cystathionine beta-sy 98.6 8.4E-08 2.9E-12 70.6 7.9 65 293-361 1-65 (70)
128 3fio_A A cystathionine beta-sy 98.6 1E-07 3.4E-12 70.1 7.2 64 374-443 1-64 (70)
129 1tif_A IF3-N, translation init 35.1 54 0.0018 23.9 4.4 27 396-423 13-39 (78)
130 1svj_A Potassium-transporting 24.7 30 0.001 28.8 1.8 35 384-420 121-155 (156)
131 3fan_A Non-structural protein; 21.6 34 0.0012 29.9 1.6 47 395-442 125-172 (213)
No 1
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=100.00 E-value=2.1e-34 Score=281.85 Aligned_cols=294 Identities=15% Similarity=0.268 Sum_probs=230.7
Q ss_pred HHHHHHhhcCCccCCCCCCCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHhh
Q 013361 35 ETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLET 114 (444)
Q Consensus 35 ~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~~ 114 (444)
+.+..|+....|++++. ++.++++++.++|+.+|+++|.+++++++||||++. ++++|++|..|++..++..
T Consensus 21 ~~i~~~l~~~~~~d~m~-~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~-------~~lvGilt~~Dl~~~l~~~ 92 (323)
T 3t4n_C 21 ESIRKFLNSKTSYDVLP-VSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKT-------SRFAGLLTTTDFINVIQYY 92 (323)
T ss_dssp HHHHHHHHHSBHHHHSC-SEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTT-------TEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHhhCC-CCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCC-------CeEEEEEEHHHHHHHHHHH
Confidence 34667778899998886 578999999999999999999999999999999875 6999999999999987543
Q ss_pred hhHHhhhcccccccccccccccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhh
Q 013361 115 AELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVI 194 (444)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l 194 (444)
...... .+. +
T Consensus 93 ~~~~~~-------------------------------------------------------------------~~~---l 102 (323)
T 3t4n_C 93 FSNPDK-------------------------------------------------------------------FEL---V 102 (323)
T ss_dssp HHCGGG-------------------------------------------------------------------GGG---G
T ss_pred HcCcch-------------------------------------------------------------------hHH---H
Confidence 321000 000 0
Q ss_pred hccCCCCCCcHHHhhhh--cCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCc-----EEEEEeHHHHHHHhhcC
Q 013361 195 LQEEPFKSTTVRSIIKS--YRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPD-----IKNYITQSAVVQGLEGC 267 (444)
Q Consensus 195 ~~~~~~~~~~v~di~~~--~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~-----l~Givt~~di~~~l~~~ 267 (444)
+.+....+.+++.. ....+++++.+++++.+|++.|.+++++++||+|++ +. ++|++|.+|+++++...
T Consensus 103 ---~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~~~~~l~Givt~~di~~~l~~~ 178 (323)
T 3t4n_C 103 ---DKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQD-EETHREIVVSVLTQYRILKFVALN 178 (323)
T ss_dssp ---GGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEEC-TTTCCEEEEEEEEHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecC-CCCCccceEEEecHHHHHHHHHhc
Confidence 00111223344321 112668999999999999999999999999999976 54 99999999999988654
Q ss_pred CCCCcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccc
Q 013361 268 KGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF 347 (444)
Q Consensus 268 ~~~~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~ 347 (444)
... ..+...++.++++ .|.. +++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++++.... +
T Consensus 179 ~~~---~~~~~~~v~~~~~-~m~~-~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dl~~~~~~~~-~ 251 (323)
T 3t4n_C 179 CRE---THFLKIPIGDLNI-ITQD-NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGI-Y 251 (323)
T ss_dssp CGG---GGGCCSBGGGTTC-SBCT-TCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEETTHHHHHHHTTH-H
T ss_pred CCc---hhhhhCcHHHcCC-CCCC-CcEEECCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHHHHHHhhch-h
Confidence 211 2345678888432 2765 8999999999999999999999999999998 899999999999999876421 1
Q ss_pred cccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013361 348 SNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE 425 (444)
Q Consensus 348 ~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e 425 (444)
.....++.++|+.... ...++++|++++++.++++.|.+++++++||+|++| +++|+||.+||+++++.+
T Consensus 252 -~~~~~~v~~~m~~~~~------~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~-~l~Giit~~Dil~~l~~~ 321 (323)
T 3t4n_C 252 -NDLSLSVGEALMRRSD------DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG-RLVGVLTLSDILKYILLG 321 (323)
T ss_dssp -HHTTSBHHHHGGGSCT------TCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTS-BEEEEEEHHHHHHHHHHC
T ss_pred -hhccCCHHHHHhhccc------cCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCC-cEEEEEEHHHHHHHHHhc
Confidence 1235689999985211 112689999999999999999999999999999887 999999999999999864
No 2
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=100.00 E-value=5e-34 Score=272.90 Aligned_cols=262 Identities=19% Similarity=0.334 Sum_probs=216.2
Q ss_pred CCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHhhhhHHhhhccccccccccc
Q 013361 53 PGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGV 132 (444)
Q Consensus 53 ~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~~~~~~~~~~~~~~~~~~~~ 132 (444)
++++++++++++|+.+|+++|.+++++++||+|++. ++++|++|..||+.++........
T Consensus 10 ~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~-------~~~~Givt~~di~~~~~~~~~~~~------------- 69 (280)
T 3kh5_A 10 QNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGN-------NKVVGIITSMDIVDFMGGGSKYNL------------- 69 (280)
T ss_dssp CCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTT-------CBEEEEEEHHHHHHHTTTSGGGHH-------------
T ss_pred cCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCC-------CeEEEEEEHHHHHHHhcccchhhh-------------
Confidence 456899999999999999999999999999999744 699999999999987522211000
Q ss_pred ccccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhhhccCCCCCCcHHHhhhhc
Q 013361 133 GTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSY 212 (444)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~di~~~~ 212 (444)
.......+++..+ ..+++++|.
T Consensus 70 -------------------------------------------------~~~~~~~~~~~~~-------~~~v~~im~-- 91 (280)
T 3kh5_A 70 -------------------------------------------------IREKHERNFLAAI-------NEPVREIME-- 91 (280)
T ss_dssp -------------------------------------------------HHTTSTTCHHHHT-------TSBGGGTSB--
T ss_pred -------------------------------------------------hhhccccchhHHh-------hhhHHHhcC--
Confidence 0000011222222 457899998
Q ss_pred CCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCC
Q 013361 213 RWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD 292 (444)
Q Consensus 213 ~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~ 292 (444)
++++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++.+..... ...++.+ +|.+
T Consensus 92 --~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~-------~~~~v~~----~m~~- 156 (280)
T 3kh5_A 92 --ENVITLKENADIDEAIETFLTKNVGGAPIVNDE-NQLISLITERDVIRALLDKID-------ENEVIDD----YITR- 156 (280)
T ss_dssp --CSCCCEETTCBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHGGGSC-------TTCBSGG----GCBC-
T ss_pred --CCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCC-CEEEEEEEHHHHHHHHhhcCC-------CCCCHHH----HhCC-
Confidence 679999999999999999999999999999987 899999999999998765421 2347888 7875
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccc--------cccccCcHHHHhcccCC
Q 013361 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF--------SNFRQLTVRDFMNAVVP 364 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~--------~~~~~~~v~~~m~~~~~ 364 (444)
++.++.+++++.++++.|.+++++++||++ +|+++|++|.+|+++.+.....+ ......++.++|..
T Consensus 157 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~--- 231 (280)
T 3kh5_A 157 DVIVATPGERLKDVARTMVRNGFRRLPVVS--EGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIMKR--- 231 (280)
T ss_dssp SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHHHCBHHHHSBS---
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHhhhhhhhhhcccchhhhhCCcHHHHhcC---
Confidence 899999999999999999999999999995 79999999999999987542211 11245689999984
Q ss_pred CCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013361 365 TTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF 422 (444)
Q Consensus 365 ~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l 422 (444)
+++++++++++.+|++.|.+++++++||+|++| +++|+||++||++++
T Consensus 232 ---------~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g-~~~Givt~~dil~~l 279 (280)
T 3kh5_A 232 ---------DVITAKEGDKLKKIAEIMVTNDIGALPVVDENL-RIKGIITEKDVLKYF 279 (280)
T ss_dssp ---------SCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTC-BEEEEEEHHHHGGGG
T ss_pred ---------CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-eEEEEEeHHHHHHhh
Confidence 889999999999999999999999999999987 999999999999876
No 3
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=100.00 E-value=5.3e-33 Score=268.53 Aligned_cols=264 Identities=16% Similarity=0.234 Sum_probs=221.8
Q ss_pred hhcCCccCCCCCCCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHhhhhHHhh
Q 013361 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120 (444)
Q Consensus 41 ~~~~~v~~~~~~~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~~~~~~~~ 120 (444)
+.+.+|++++ +++++++++++|+.+|++.|.+++++++||+| + +++|++|..||+.++......
T Consensus 17 ~~~~~V~dim---~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d--~--------~l~GivT~~Di~~~~~~~~~~--- 80 (296)
T 3ddj_A 17 FQGMNIETLM---IKNPPILSKEDRLGSAFKKINEGGIGRIIVAN--E--------KIEGLLTTRDLLSTVESYCKD--- 80 (296)
T ss_dssp TCCSSGGGTC---EESCCEECTTSBHHHHHHHTTGGGCCEEEEES--S--------SEEEEEEHHHHHGGGTTCC-----
T ss_pred hcccCHHHhc---cCCCcEECCCccHHHHHHHHHHCCCceEEEEC--C--------eEEEEEeHHHHHHHhcccccc---
Confidence 3467787777 45899999999999999999999999999999 3 999999999999875221100
Q ss_pred hcccccccccccccccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhhhccCCC
Q 013361 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200 (444)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 200 (444)
.....+++..
T Consensus 81 ---------------------------------------------------------------~~~~~~~~~~------- 90 (296)
T 3ddj_A 81 ---------------------------------------------------------------SCSQGDLYHI------- 90 (296)
T ss_dssp ----------------------------------------------------------------CCHHHHHHH-------
T ss_pred ---------------------------------------------------------------cccchhhHHH-------
Confidence 0011222222
Q ss_pred CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCc
Q 013361 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP 280 (444)
Q Consensus 201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~ 280 (444)
...+++++|. .+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++.+.... ...+
T Consensus 91 ~~~~v~~im~----~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~lvGivt~~dl~~~~~~~~--------~~~~ 157 (296)
T 3ddj_A 91 STTPIIDYMT----PNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-DKPVGIVTEREFLLLYKDLD--------EIFP 157 (296)
T ss_dssp HTSBGGGTSE----ESCCCEETTSCHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHGGGGGGSC--------CCCB
T ss_pred hcccHHHhcc----CCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHhhhccc--------cccc
Confidence 1456899998 568999999999999999999999999999977 89999999999998775432 3458
Q ss_pred ccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc-----ccccCcH
Q 013361 281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS-----NFRQLTV 355 (444)
Q Consensus 281 v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~-----~~~~~~v 355 (444)
+.+ +|.+ ++.++.+++++.++++.|.+++++++||+|+ +|+++|++|.+|+++.+.. .+. .....++
T Consensus 158 v~~----~m~~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~--~~~~~~~~~~~~~~v 229 (296)
T 3ddj_A 158 VKV----FMST-KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD-DNKVVGIVTVVNAIKQLAK--AVDKLDPDYFYGKVV 229 (296)
T ss_dssp HHH----HSBC-SCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHH--HHHHTCTHHHHTCBH
T ss_pred HHH----hhcC-CCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHH--HHhhcChhhhcCcCH
Confidence 888 7875 8999999999999999999999999999998 8999999999999988752 111 1235689
Q ss_pred HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
.++|.. ++++|++++++.++++.|.+++++++||+|++| +++|+||++||++++..
T Consensus 230 ~~~m~~------------~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g-~~~Giit~~Dil~~l~~ 285 (296)
T 3ddj_A 230 KDVMVT------------NLVTIDELASVNRAAAEMIVKRIGSLLILNKDN-TIRGIITERDLLIALHH 285 (296)
T ss_dssp HHHSBC------------CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHH
T ss_pred HHHhCC------------CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCC-eEEEEEcHHHHHHHHHH
Confidence 999985 889999999999999999999999999999887 99999999999999986
No 4
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=100.00 E-value=9.5e-32 Score=264.25 Aligned_cols=296 Identities=18% Similarity=0.301 Sum_probs=228.4
Q ss_pred HHHHHHhhcCCccCCCCCCCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHhh
Q 013361 35 ETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLET 114 (444)
Q Consensus 35 ~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~~ 114 (444)
+.+..|++..+|++++. +..+++++++++|+.+|++.|.+++++++||+|.+. ++++|+|+..|++.++...
T Consensus 13 ~~~~~~l~~~~v~dim~-~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~-------~~~vGiv~~~Dl~~~~~~~ 84 (334)
T 2qrd_G 13 KEIQAFIRSRTSYDVLP-TSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA-------NKFAGLLTMADFVNVIKYY 84 (334)
T ss_dssp HHHHHHHHHSBGGGGSC-SEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTT-------TEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhhCC-CCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCC-------CeEEEEEEHHHHHHHHHHH
Confidence 45677888899999986 466799999999999999999999999999999864 5999999999999876543
Q ss_pred hhHHhhhcccccccccccccccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhh
Q 013361 115 AELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVI 194 (444)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l 194 (444)
..... .+ +.+..+
T Consensus 85 ~~~~~-----------------------------~~--------------------------------------~~~~~~ 97 (334)
T 2qrd_G 85 YQSSS-----------------------------FP--------------------------------------EAIAEI 97 (334)
T ss_dssp HHHCS-----------------------------CG--------------------------------------GGGGGG
T ss_pred hhccC-----------------------------Cc--------------------------------------cHHHHH
Confidence 21000 00 000000
Q ss_pred hccCCCCCCcH----HHhhhhcCCCCc--eEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCc----EEEEEeHHHHHHHh
Q 013361 195 LQEEPFKSTTV----RSIIKSYRWAPF--LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPD----IKNYITQSAVVQGL 264 (444)
Q Consensus 195 ~~~~~~~~~~v----~di~~~~~~~~~--v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~----l~Givt~~di~~~l 264 (444)
.......+ +++|. .++ +++.+++++.+|++.|.+++++++||+|++.++ ++|++|..|+++++
T Consensus 98 ---~~~~~~~i~~~l~~im~----~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~ 170 (334)
T 2qrd_G 98 ---DKFRLLGLREVERKIGA----IPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFI 170 (334)
T ss_dssp ---GSCBHHHHHHHHHHHTC----SCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHH
T ss_pred ---hhhchhhHHHHHHhhcc----CCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHH
Confidence 00000012 23443 445 899999999999999999999999999975234 99999999999988
Q ss_pred hcCCCCCcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCC
Q 013361 265 EGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (444)
Q Consensus 265 ~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~ 344 (444)
..... .. .....+++++.. +|.. ++.++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+...
T Consensus 171 ~~~~~--~~-~~~~~~v~~l~~-~m~~-~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~-~~~~~Giit~~dl~~~~~~~ 244 (334)
T 2qrd_G 171 SMNCK--ET-AMLRVPLNQMTI-GTWS-NLATASMETKVYDVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQDG 244 (334)
T ss_dssp HHHCG--GG-GGCCCBGGGSSC-SBCS-SCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEETHHHHHHHTTS
T ss_pred Hhhcc--ch-hhhhCcHHHhCC-cccC-CceEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHHHHhhcc
Confidence 64311 01 123567777432 3665 8999999999999999999999999999997 78999999999999987642
Q ss_pred ccccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 345 ELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 345 ~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
. + .....++.++|...... ..++++|++++++.++++.|.+++++++||||++| +++|+||.+||++++..
T Consensus 245 ~-~-~~~~~~v~~~m~~~~~~------~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g-~l~Giit~~dil~~~~~ 315 (334)
T 2qrd_G 245 D-Y-SNLDLSVGEALLKRPAN------FDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENL-KLEGILSLADILNYIIY 315 (334)
T ss_dssp C-G-GGGGSBHHHHHTTCCTT------CCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTC-BEEEEEEHHHHHHHHHS
T ss_pred c-c-ccccCcHHHHHhccccc------CCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCC-eEEEEEeHHHHHHHHHh
Confidence 1 1 12356899999731100 02789999999999999999999999999999887 99999999999999986
Q ss_pred CCC
Q 013361 425 EPP 427 (444)
Q Consensus 425 e~~ 427 (444)
+..
T Consensus 316 ~~~ 318 (334)
T 2qrd_G 316 DKT 318 (334)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 5
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=100.00 E-value=3.5e-32 Score=266.95 Aligned_cols=301 Identities=15% Similarity=0.235 Sum_probs=233.0
Q ss_pred ChHHHHHHHhhcCCccCCCCCCCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHH
Q 013361 32 SLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWV 111 (444)
Q Consensus 32 ~~~~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~ 111 (444)
...+.++.+|...+|++++. ++.+++++++++|+.+|++.|.+++++++||+|.+. ++++|+|+..|++..+
T Consensus 23 ~~~~~~~~~l~~~~v~dim~-p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~-------~~~vGivt~~Dll~~l 94 (330)
T 2v8q_E 23 SNSSVYTTFMKSHRCYDLIP-TSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKK-------QSFVGMLTITDFINIL 94 (330)
T ss_dssp CCSCHHHHHHHHSBGGGGSC-SEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTT-------TEEEEEEEHHHHHHHH
T ss_pred hhhHHHHHHHHcCcHhhhcc-CCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCC-------CeEEEEEEHHHHHHHH
Confidence 34556889999999999985 567899999999999999999999999999999875 5899999999999876
Q ss_pred HhhhhHHhhhcccccccccccccccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhH
Q 013361 112 LETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFY 191 (444)
Q Consensus 112 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 191 (444)
.......... . . ......-..+.
T Consensus 95 ~~~~~~~~~~-----------------------~------------------------------~----~l~~~~~~~~~ 117 (330)
T 2v8q_E 95 HRYYKSALVQ-----------------------I------------------------------Y----ELEEHKIETWR 117 (330)
T ss_dssp HHHHHHHTTT-----------------------C------------------------------C----CGGGCBHHHHH
T ss_pred HHHHhccccc-----------------------h------------------------------h----HHhhccHHHHH
Confidence 5433211000 0 0 00000000110
Q ss_pred HhhhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecC-CCCcEEEEEeHHHHHHHhhcCCCC
Q 013361 192 KVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQGLEGCKGR 270 (444)
Q Consensus 192 ~~l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~-~~~~l~Givt~~di~~~l~~~~~~ 270 (444)
.+++++|. .+++++.+++++.+|++.|.+++++++||+|+ + |+++|++|..|+++++......
T Consensus 118 -----------~~~~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-~~~~Givt~~dl~~~~~~~~~~ 181 (330)
T 2v8q_E 118 -----------EVYLQDSF----KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES-GNTLYILTHKRILKFLKLFITE 181 (330)
T ss_dssp -----------HHHSSSSC----CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTT-CCEEEEECHHHHHHHHHHHSCS
T ss_pred -----------HHHhhccc----CCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCC-CcEEEEEcHHHHHHHHHHHhhc
Confidence 01334555 67999999999999999999999999999997 5 8999999999999988654222
Q ss_pred CcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccccc
Q 013361 271 DWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF 350 (444)
Q Consensus 271 ~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~ 350 (444)
.....+...++.++. +|+..++.++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+.... +. .
T Consensus 182 ~~~~~~~~~~v~~~~--v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~~~l~Giit~~dl~~~~~~~~-~~-~ 256 (330)
T 2v8q_E 182 FPKPEFMSKSLEELQ--IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEKT-YN-N 256 (330)
T ss_dssp SSCCGGGGSBHHHHT--CSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGGSSC-CC-C
T ss_pred cCchhhhcCCHHHhc--ccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEHHHHHHHHhccc-cc-c
Confidence 222233455666642 244137899999999999999999999999999997 799999999999998775421 11 1
Q ss_pred ccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013361 351 RQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE 425 (444)
Q Consensus 351 ~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e 425 (444)
...++.++|..... ...++++|++++++.+++++|.+++++++||+|++| +++|+||..||++++..+
T Consensus 257 ~~~~v~~~~~~~~~------~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g-~l~Giit~~Dil~~~~~~ 324 (330)
T 2v8q_E 257 LDVSVTKALQHRSH------YFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALVLT 324 (330)
T ss_dssp CSSBHHHHGGGCCS------CCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHHSS
T ss_pred ccCcHHHHHhcccc------ccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCC-cEEEEEeHHHHHHHHHhh
Confidence 25689999952100 114889999999999999999999999999999887 999999999999999864
No 6
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.97 E-value=4.2e-31 Score=253.11 Aligned_cols=245 Identities=18% Similarity=0.254 Sum_probs=187.6
Q ss_pred CCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHhhhhHHhhhcccccccccccc
Q 013361 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG 133 (444)
Q Consensus 54 ~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~~~~~~~~~~~~~~~~~~~~~ 133 (444)
..+++++++++|+.+|+++|.++++.++||+|++ ++++|+++..|++..+.
T Consensus 8 ~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~--------~~~~Giv~~~dl~~~~~--------------------- 58 (282)
T 2yzq_A 8 TQNPVTITLPATRNYALELFKKYKVRSFPVVNKE--------GKLVGIISVKRILVNPD--------------------- 58 (282)
T ss_dssp EESCCCEESSCC------------CCEEEEECTT--------CCEEEEEESSCC--------------------------
T ss_pred cCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC--------CcEEEEEEHHHHHhhhc---------------------
Confidence 3577899999999999999999999999999975 59999999999885420
Q ss_pred cccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhhhccCCCCCCcHHHhhhhcC
Q 013361 134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR 213 (444)
Q Consensus 134 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~di~~~~~ 213 (444)
..+++++|.
T Consensus 59 --------------------------------------------------------------------~~~v~~~m~--- 67 (282)
T 2yzq_A 59 --------------------------------------------------------------------EEQLAMLVK--- 67 (282)
T ss_dssp -------------------------------------------------------------------------CCCB---
T ss_pred --------------------------------------------------------------------cCCHHHHcC---
Confidence 123556666
Q ss_pred CCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHH-HhhcCCCCCcccccccCcccccccCCCCCC
Q 013361 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ-GLEGCKGRDWFDIIASQPISDLGLPFMSSD 292 (444)
Q Consensus 214 ~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~-~l~~~~~~~~~~~~~~~~v~~l~l~im~~~ 292 (444)
.+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++ ++.... .....++++ +|..
T Consensus 68 -~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~------~~~~~~v~~----~m~~- 134 (282)
T 2yzq_A 68 -RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIRRYFAKSE------KYKGVEIEP----YYQR- 134 (282)
T ss_dssp -SCCCEEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCS------GGGGCBSTT----TSBS-
T ss_pred -CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhccC------CcccCcHHH----HhCC-
Confidence 458899999999999999999999999999987 89999999999998 765421 113567888 7875
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHH------HHhc------CC-----------cc---
Q 013361 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR------HLLL------KP-----------EL--- 346 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll------~~l~------~~-----------~~--- 346 (444)
+++++.+++++.++++.|.+++++++||+|+ +|+++|++|.+|++ +++. .+ ..
T Consensus 135 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (282)
T 2yzq_A 135 YVSIVWEGTPLKAALKALLLSNSMALPVVDS-EGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEK 213 (282)
T ss_dssp CCCCEETTSBHHHHHHHHHTCSSSEEEEECT-TSCEEEEEEGGGGGGCGGGCC---------------------------
T ss_pred CCEEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhH
Confidence 8899999999999999999999999999997 78999999999998 4432 00 00
Q ss_pred -ccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013361 347 -FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE 425 (444)
Q Consensus 347 -~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e 425 (444)
.......++.++|+. +++++++++++.+|+++|.+++++++||+|++| +++|+||++||++++..+
T Consensus 214 ~~~~~~~~~v~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~lvGiit~~Dil~~~~~~ 280 (282)
T 2yzq_A 214 FELQLPNKPVAEIMTR------------DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEG-DLIGLIRDFDLLKVLVKS 280 (282)
T ss_dssp -----CCCBGGGTCBS------------SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTT-EEEEEEEHHHHGGGGCC-
T ss_pred hhhhhccCCHHHhcCC------------CCceeCCCCCHHHHHHHHHHcCcceeEEECCCC-CEEEEEeHHHHHHHHHhh
Confidence 011235678889884 889999999999999999999999999999877 999999999999988754
No 7
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.92 E-value=8.8e-24 Score=201.58 Aligned_cols=186 Identities=23% Similarity=0.394 Sum_probs=158.5
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc--------ccccccCccccccc
Q 013361 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW--------FDIIASQPISDLGL 286 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~--------~~~~~~~~v~~l~l 286 (444)
++++++.+++++.+|+++|.+++++++||+|++.++++|++|..|+++++........ +....+.++++
T Consensus 12 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--- 88 (280)
T 3kh5_A 12 KKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVRE--- 88 (280)
T ss_dssp SCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTSBGGG---
T ss_pred CCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhhhHHH---
Confidence 5799999999999999999999999999999734899999999999998754321111 11122568888
Q ss_pred CCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCC
Q 013361 287 PFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTT 366 (444)
Q Consensus 287 ~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~ 366 (444)
+|.+ +++++.+++++.++++.|.+++++++||+|+ +|+++|++|.+|+++.+.... ....++.++|..
T Consensus 89 -im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~----~~~~~v~~~m~~----- 156 (280)
T 3kh5_A 89 -IMEE-NVITLKENADIDEAIETFLTKNVGGAPIVND-ENQLISLITERDVIRALLDKI----DENEVIDDYITR----- 156 (280)
T ss_dssp -TSBC-SCCCEETTCBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHHHHHGGGS----CTTCBSGGGCBC-----
T ss_pred -hcCC-CCEEECCCCCHHHHHHHHHhCCCCEEEEEcC-CCEEEEEEEHHHHHHHHhhcC----CCCCCHHHHhCC-----
Confidence 7886 8999999999999999999999999999998 899999999999998875321 123478999974
Q ss_pred CCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 367 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 367 ~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
++.++++++++.++++.|.+++++++||+ ++| +++|+||.+||++.+..
T Consensus 157 -------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~-~~~Givt~~dl~~~~~~ 205 (280)
T 3kh5_A 157 -------DVIVATPGERLKDVARTMVRNGFRRLPVV-SEG-RLVGIITSTDFIKLLGS 205 (280)
T ss_dssp -------SCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETT-EEEEEEEHHHHHHHHTS
T ss_pred -------CCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECC-EEEEEEEHHHHHHHHhh
Confidence 88999999999999999999999999999 455 99999999999998853
No 8
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.91 E-value=7.4e-24 Score=204.33 Aligned_cols=193 Identities=20% Similarity=0.298 Sum_probs=167.7
Q ss_pred CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCC----Ccccc
Q 013361 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR----DWFDI 275 (444)
Q Consensus 200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~----~~~~~ 275 (444)
....+|+|+|. .+++++.+++++.+|++.|.+++++++||+| ++++|++|..||++.+...... ..+..
T Consensus 17 ~~~~~V~dim~----~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~~~~~~~~~~~ 89 (296)
T 3ddj_A 17 FQGMNIETLMI----KNPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCSQGDLYH 89 (296)
T ss_dssp TCCSSGGGTCE----ESCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---CCHHHHHH
T ss_pred hcccCHHHhcc----CCCcEECCCccHHHHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhcccccccccchhhHH
Confidence 45678999998 6799999999999999999999999999998 6899999999999988543211 11112
Q ss_pred cccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013361 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV 355 (444)
Q Consensus 276 ~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v 355 (444)
....++++ +|++ +++++.+++++.++++.|.+++++++||+|+ +++++|++|.+|+++.+... ....++
T Consensus 90 ~~~~~v~~----im~~-~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~-~~~lvGivt~~dl~~~~~~~-----~~~~~v 158 (296)
T 3ddj_A 90 ISTTPIID----YMTP-NPVTVYNTSDEFTAINIMVTRNFGSLPVVDI-NDKPVGIVTEREFLLLYKDL-----DEIFPV 158 (296)
T ss_dssp HHTSBGGG----TSEE-SCCCEETTSCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHGGGGGGS-----CCCCBH
T ss_pred HhcccHHH----hccC-CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHhhhcc-----cccccH
Confidence 34678999 7886 8999999999999999999999999999997 79999999999998876421 235589
Q ss_pred HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhH
Q 013361 356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI 423 (444)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~ 423 (444)
.++|.. ++.++++++++.++++.|.+++++++||+|+++ +++|+||.+||++.+.
T Consensus 159 ~~~m~~------------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~ 213 (296)
T 3ddj_A 159 KVFMST------------KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDN-KVVGIVTVVNAIKQLA 213 (296)
T ss_dssp HHHSBC------------SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHH
T ss_pred HHhhcC------------CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-EEEEEEEHHHHHHHHH
Confidence 999984 889999999999999999999999999999887 9999999999999886
No 9
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.90 E-value=2.8e-23 Score=202.76 Aligned_cols=222 Identities=15% Similarity=0.228 Sum_probs=168.7
Q ss_pred CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCC----CCccccc
Q 013361 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG----RDWFDII 276 (444)
Q Consensus 201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~----~~~~~~~ 276 (444)
...++.|+|... .+++.++.++++.+|++.|.+++++++||+|++.++++|++|..|++.++..... ...+..+
T Consensus 28 ~~~~~~d~m~~~--~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~~~~~~~l~~~ 105 (323)
T 3t4n_C 28 NSKTSYDVLPVS--YRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKL 105 (323)
T ss_dssp HHSBHHHHSCSE--EEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHCGGGGGGGGGC
T ss_pred HhCchHhhCCCC--CcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcCcchhHHHHHH
Confidence 466899999844 6799999999999999999999999999999875699999999999987642210 1111111
Q ss_pred ccCccccc--ccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCe-----EEEEEeHHHHHHHhcCCccccc
Q 013361 277 ASQPISDL--GLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKK-----IVGNVSIRDIRHLLLKPELFSN 349 (444)
Q Consensus 277 ~~~~v~~l--~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~-----lvGiIt~~Dll~~l~~~~~~~~ 349 (444)
....+.++ ...+|.+ +++++.+++++.+|++.|.+++++++||+|+ ++. ++|++|.+|+++++........
T Consensus 106 ~~~~v~~i~~~~~~~~~-~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~~~~l~Givt~~di~~~l~~~~~~~~ 183 (323)
T 3t4n_C 106 QLDGLKDIERALGVDQL-DTASIHPSRPLFEACLKMLESRSGRIPLIDQ-DEETHREIVVSVLTQYRILKFVALNCRETH 183 (323)
T ss_dssp BHHHHHHHHHHTTC-----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEE-CTTTCCEEEEEEEEHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHHHHhCCCCC-CceEeCCCCcHHHHHHHHHhCCeeEEEEEec-CCCCCccceEEEecHHHHHHHHHhcCCchh
Confidence 11222221 0114565 7899999999999999999999999999997 554 9999999999988753211122
Q ss_pred cccCcHHHH---hcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCC
Q 013361 350 FRQLTVRDF---MNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP 426 (444)
Q Consensus 350 ~~~~~v~~~---m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~ 426 (444)
....++.++ |.. +++++.+++++.++++.|.+++++++||+|++| +++|+||.+||++.+...
T Consensus 184 ~~~~~v~~~~~~m~~------------~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~-~~~Giit~~dl~~~~~~~- 249 (323)
T 3t4n_C 184 FLKIPIGDLNIITQD------------NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG-YLINVYEAYDVLGLIKGG- 249 (323)
T ss_dssp GCCSBGGGTTCSBCT------------TCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEETTHHHHHHHTT-
T ss_pred hhhCcHHHcCCCCCC------------CcEEECCCCcHHHHHHHHHHcCCCEEEEECCCC-eEEEEEeHHHHHHHHhhc-
Confidence 345688888 653 889999999999999999999999999999887 999999999999988742
Q ss_pred CccchhhhhhhHHHhhc
Q 013361 427 PNHLDNYFGFSVKDLLN 443 (444)
Q Consensus 427 ~~~~~~~~~~~~~~~~~ 443 (444)
.+ ......++++|+
T Consensus 250 --~~-~~~~~~v~~~m~ 263 (323)
T 3t4n_C 250 --IY-NDLSLSVGEALM 263 (323)
T ss_dssp --HH-HHTTSBHHHHGG
T ss_pred --hh-hhccCCHHHHHh
Confidence 11 122445666554
No 10
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.87 E-value=5e-22 Score=189.82 Aligned_cols=177 Identities=18% Similarity=0.307 Sum_probs=138.4
Q ss_pred cHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccc
Q 013361 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD 283 (444)
Q Consensus 204 ~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~ 283 (444)
+++++|. .+++++.+++++.+|+++|.+++++++||+|++ ++++|++|..|++..+ ...++++
T Consensus 2 ~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~-~~~~Giv~~~dl~~~~------------~~~~v~~ 64 (282)
T 2yzq_A 2 RVKTIMT----QNPVTITLPATRNYALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNP------------DEEQLAM 64 (282)
T ss_dssp BHHHHSE----ESCCCEESSCC------------CCEEEEECTT-CCEEEEEESSCC----------------------C
T ss_pred chHHhcc----CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhhh------------ccCCHHH
Confidence 5788888 669999999999999999999999999999975 8999999999987543 2357888
Q ss_pred cccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH-HhcCCccccccccCcHHHHhccc
Q 013361 284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH-LLLKPELFSNFRQLTVRDFMNAV 362 (444)
Q Consensus 284 l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~-~l~~~~~~~~~~~~~v~~~m~~~ 362 (444)
+|.+ ++.++.+++++.++++.|.+++.+.+||+|+ +|+++|++|.+|+++ .+..... ....++.++|..
T Consensus 65 ----~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~-~~~~~Giit~~di~~~~~~~~~~---~~~~~v~~~m~~- 134 (282)
T 2yzq_A 65 ----LVKR-DVPVVKENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYFAKSEK---YKGVEIEPYYQR- 134 (282)
T ss_dssp ----CCBS-CCCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTTTCSG---GGGCBSTTTSBS-
T ss_pred ----HcCC-CCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHhccCC---cccCcHHHHhCC-
Confidence 6876 7899999999999999999999999999998 789999999999998 7653211 235578888874
Q ss_pred CCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHH
Q 013361 363 VPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVI 419 (444)
Q Consensus 363 ~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl 419 (444)
+++++++++++.++++.|.+++++++||+|+++ +++|+||.+|++
T Consensus 135 -----------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~-~~~Giit~~dl~ 179 (282)
T 2yzq_A 135 -----------YVSIVWEGTPLKAALKALLLSNSMALPVVDSEG-NLVGIVDETDLL 179 (282)
T ss_dssp -----------CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTS-CEEEEEEGGGGG
T ss_pred -----------CCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCC-eEEEEEEHHHHh
Confidence 789999999999999999999999999999887 999999999999
No 11
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.87 E-value=4.5e-21 Score=187.95 Aligned_cols=207 Identities=14% Similarity=0.142 Sum_probs=160.0
Q ss_pred CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCC----CCCcccccc
Q 013361 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK----GRDWFDIIA 277 (444)
Q Consensus 202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~----~~~~~~~~~ 277 (444)
..+++|+|... .+++++++++++.+|++.|.+++++++||+|.+.++++|++|.+|++.++.... ....+..+.
T Consensus 21 ~~~v~dim~~~--~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~~~~ 98 (334)
T 2qrd_G 21 SRTSYDVLPTS--FRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEID 98 (334)
T ss_dssp HSBGGGGSCSE--EEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGG
T ss_pred cCchhhhCCCC--CCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHHHHHh
Confidence 46799999733 568999999999999999999999999999986579999999999998764211 111111222
Q ss_pred cCcccccc---cCCCCCCCc--eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCe----EEEEEeHHHHHHHhcCCcccc
Q 013361 278 SQPISDLG---LPFMSSDEV--ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKK----IVGNVSIRDIRHLLLKPELFS 348 (444)
Q Consensus 278 ~~~v~~l~---l~im~~~~~--~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~----lvGiIt~~Dll~~l~~~~~~~ 348 (444)
..++..+. -.+|.. ++ +++.+++++.++++.|.+++++++||+|+.+++ ++|++|.+|+++++.......
T Consensus 99 ~~~~~~i~~~l~~im~~-~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~~ 177 (334)
T 2qrd_G 99 KFRLLGLREVERKIGAI-PPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKET 177 (334)
T ss_dssp SCBHHHHHHHHHHHTCS-CSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGGG
T ss_pred hhchhhHHHHHHhhccC-CCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccch
Confidence 33333310 002443 45 899999999999999999999999999862234 999999999998875211000
Q ss_pred ccccCcHHHH---hcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 349 NFRQLTVRDF---MNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 349 ~~~~~~v~~~---m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
.....++.++ |.. ++.++++++++.++++.|.+++++++||+|++| +++|+||.+||++.+..
T Consensus 178 ~~~~~~v~~l~~~m~~------------~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~-~~~Giit~~dl~~~~~~ 243 (334)
T 2qrd_G 178 AMLRVPLNQMTIGTWS------------NLATASMETKVYDVIKMLAEKNISAVPIVNSEG-TLLNVYESVDVMHLIQD 243 (334)
T ss_dssp GGCCCBGGGSSCSBCS------------SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEETHHHHHHHTT
T ss_pred hhhhCcHHHhCCcccC------------CceEECCCCcHHHHHHHHHHcCCcEEEEEcCCC-cEEEEEEHHHHHHHhhc
Confidence 1224577774 553 789999999999999999999999999999887 99999999999998765
No 12
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.86 E-value=6.2e-21 Score=186.73 Aligned_cols=204 Identities=13% Similarity=0.118 Sum_probs=160.4
Q ss_pred CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCC--CCcccccccC
Q 013361 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG--RDWFDIIASQ 279 (444)
Q Consensus 202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~--~~~~~~~~~~ 279 (444)
..+++|+|... .+++++++++++.+|++.|.+++++++||+|.+.++++|++|..|++..+..... ......+...
T Consensus 34 ~~~v~dim~p~--~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~~~~~~l~~~ 111 (330)
T 2v8q_E 34 SHRCYDLIPTS--SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEH 111 (330)
T ss_dssp HSBGGGGSCSE--EEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGC
T ss_pred cCcHhhhccCC--CcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccccchhHHhhc
Confidence 55799999422 6699999999999999999999999999999865689999999999987653210 0001111111
Q ss_pred -------cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCc---cccc
Q 013361 280 -------PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE---LFSN 349 (444)
Q Consensus 280 -------~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~---~~~~ 349 (444)
++++ +|.+ +++++.+++++.++++.|.+++++++||+|+++|+++|++|.+|+++++.... ....
T Consensus 112 ~~~~~~~~~~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~ 186 (330)
T 2v8q_E 112 KIETWREVYLQ----DSFK-PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPE 186 (330)
T ss_dssp BHHHHHHHHSS----SSCC-CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCG
T ss_pred cHHHHHHHHhh----cccC-CceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchh
Confidence 2234 6776 89999999999999999999999999999853488999999999998874210 0111
Q ss_pred cccCcHHHH--hcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 350 FRQLTVRDF--MNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 350 ~~~~~v~~~--m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
+...++.++ |.. .++.++.+++++.++++.|.+++++++||+|+++ +++|+||.+||++.+..
T Consensus 187 ~~~~~v~~~~v~~~-----------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~-~l~Giit~~dl~~~~~~ 251 (330)
T 2v8q_E 187 FMSKSLEELQIGTY-----------ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG-RVVDIYSKFDVINLAAE 251 (330)
T ss_dssp GGGSBHHHHTCSBC-----------SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTS-BEEEEEEGGGTGGGGGS
T ss_pred hhcCCHHHhcccCc-----------CCceEECCCCCHHHHHHHHHHcCCCeEEEECCCC-cEEEEEEHHHHHHHHhc
Confidence 224466666 321 2789999999999999999999999999999887 99999999999998764
No 13
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.82 E-value=4.4e-20 Score=163.32 Aligned_cols=129 Identities=29% Similarity=0.472 Sum_probs=112.6
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcc----------
Q 013361 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL---------- 346 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~---------- 346 (444)
...+|++ +|++ +++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++.......
T Consensus 16 ~~~~V~d----iM~~-~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~ 89 (170)
T 4esy_A 16 RQVPIRD----ILTS-PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ-NGHLVGIITESDFLRGSIPFWIYEASEILSRA 89 (170)
T ss_dssp HTSBGGG----GCCS-CCCCEETTSBHHHHHHHHHHTTCSEEEEECT-TSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTT
T ss_pred cCCCHHH----hcCC-CCcEECCcCcHHHHHHHHHHcCCeEEEEEcC-CccEEEEEEHHHHHHHHhhccccchhhhhhhc
Confidence 4678999 8987 8999999999999999999999999999998 8999999999999876543211
Q ss_pred ---------ccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHH
Q 013361 347 ---------FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRD 417 (444)
Q Consensus 347 ---------~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~D 417 (444)
+......++.++|+. ++++|++++++.+|+++|.+++++++||+|+ | +++|+||++|
T Consensus 90 ~~~~~~~~~~~~~~~~~v~~im~~------------~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~-g-~lvGivt~~D 155 (170)
T 4esy_A 90 IPAPEVEHLFETGRKLTASAVMTQ------------PVVTAAPEDSVGSIADQMRRHGIHRIPVVQD-G-VPVGIVTRRD 155 (170)
T ss_dssp SCHHHHHHHHHHHTTCBHHHHCBC------------CSCCBCTTSBHHHHHHHHHHTTCSEEEEEET-T-EEEEEEEHHH
T ss_pred cchhhHHhhhccccccchhhhccc------------CcccCCcchhHHHHHHHHHHcCCcEEEEEEC-C-EEEEEEEHHH
Confidence 112335689999985 8999999999999999999999999999985 5 9999999999
Q ss_pred HHHHhHcC
Q 013361 418 VISCFIFE 425 (444)
Q Consensus 418 Il~~l~~e 425 (444)
|+++++.+
T Consensus 156 il~~l~~~ 163 (170)
T 4esy_A 156 LLKLLLLE 163 (170)
T ss_dssp HTTTSCCC
T ss_pred HHHHHHhc
Confidence 99999864
No 14
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.80 E-value=4.3e-19 Score=157.30 Aligned_cols=130 Identities=14% Similarity=0.221 Sum_probs=111.3
Q ss_pred cccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccC
Q 013361 276 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQL 353 (444)
Q Consensus 276 ~~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~~~~~~~~~~~~ 353 (444)
+...++++ +|++ .+++++++++++.+|++.|.+++++++||+|+ + ++++|+||.+|+++.+... ...
T Consensus 39 l~~~~v~d----iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~-~~~~lvGivt~~dl~~~~~~~------~~~ 107 (172)
T 3lhh_A 39 LDERTISS----LMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRN-NVDDMVGIISAKQLLSESIAG------ERL 107 (172)
T ss_dssp ----CTTT----TSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESS-STTSEEEEEEHHHHHHHHHTT------CCC
T ss_pred cCCCCHHH----hCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeC-CCCeEEEEEEHHHHHHHHhhc------Ccc
Confidence 35678889 7873 27899999999999999999999999999997 6 8999999999999887532 256
Q ss_pred cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccc
Q 013361 354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHL 430 (444)
Q Consensus 354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~ 430 (444)
++.++| . +++++++++++.++++.|.+++++++||+|++| +++|+||+.||++.+.++..+.+
T Consensus 108 ~v~~im-~------------~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g-~lvGiit~~Dil~~l~~~~~de~ 170 (172)
T 3lhh_A 108 ELVDLV-K------------NCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYG-DLKGLVTLQDMMDALTGEFFQED 170 (172)
T ss_dssp CGGGGC-B------------CCEEEETTCCHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHTTCC---
T ss_pred cHHHHh-c------------CCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCC-CEEEEeeHHHHHHHHhCCCcccc
Confidence 899999 4 889999999999999999999999999999988 99999999999999998665544
No 15
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.78 E-value=2.1e-18 Score=145.41 Aligned_cols=126 Identities=20% Similarity=0.268 Sum_probs=109.1
Q ss_pred cccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccC
Q 013361 276 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQL 353 (444)
Q Consensus 276 ~~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~~~~~~~~~~~~ 353 (444)
+...++++ +|++ .+++++.+++++.+|++.|.+++++++||+|+ + ++++|++|.+|+++.+.... ...
T Consensus 3 l~~~~v~~----iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~~~Givt~~dl~~~~~~~~-----~~~ 72 (130)
T 3i8n_A 3 AQDVPVTQ----VMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSE-QKDNIIGFVHRLELFKMQQSGS-----GQK 72 (130)
T ss_dssp ----CCTT----TSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESS-STTCEEEECCHHHHHHHHHTTT-----TTS
T ss_pred cCcCCHhh----CCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeC-CCCcEEEEEEHHHHHHHHhcCC-----CcC
Confidence 35678889 7875 25679999999999999999999999999997 5 89999999999998875421 256
Q ss_pred cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013361 354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE 425 (444)
Q Consensus 354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e 425 (444)
++.++|+ ++.++++++++.++++.|.+++.+++||+|++| +++|+||+.||++.+++|
T Consensus 73 ~v~~~m~-------------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g-~~vGivt~~dil~~l~ge 130 (130)
T 3i8n_A 73 QLGAVMR-------------PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYG-TVLGLVTLEDIFEHLVGE 130 (130)
T ss_dssp BHHHHSE-------------ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTS-CEEEEEEHHHHHHHHHTC
T ss_pred CHHHHhc-------------CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCC-CEEEEEEHHHHHHHHcCC
Confidence 8999996 678999999999999999999999999999987 999999999999999863
No 16
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.77 E-value=2e-18 Score=145.68 Aligned_cols=126 Identities=13% Similarity=0.214 Sum_probs=108.6
Q ss_pred CcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013361 279 QPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD 357 (444)
Q Consensus 279 ~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~ 357 (444)
.++++ +|++ .+++++.+++++.+|++.|.+++++++||+++++++++|++|.+|+++.+..... +...++.+
T Consensus 2 ~~v~~----iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~---~~~~~v~~ 74 (130)
T 3hf7_A 2 VSVND----IMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE---FTKEIMLR 74 (130)
T ss_dssp CBHHH----HSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC---CCHHHHHH
T ss_pred cCHHH----hCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc---cchhhHHH
Confidence 35667 6863 3689999999999999999999999999997535899999999999998764321 23457899
Q ss_pred HhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013361 358 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE 425 (444)
Q Consensus 358 ~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e 425 (444)
+|. ++.++++++++.++++.|.+++++++||+|++| +++|+||+.||++.+.++
T Consensus 75 ~m~-------------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g-~lvGiit~~Dil~~l~g~ 128 (130)
T 3hf7_A 75 AAD-------------EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYG-DIQGLVTVEDILEEIVGD 128 (130)
T ss_dssp HSB-------------CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTS-CEEEEEEHHHHHHHHHC-
T ss_pred hcc-------------CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCC-CEEEEeeHHHHHHHHhCC
Confidence 995 789999999999999999999999999999887 999999999999999874
No 17
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.77 E-value=6.7e-19 Score=153.58 Aligned_cols=129 Identities=18% Similarity=0.245 Sum_probs=108.8
Q ss_pred ccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccc-cccccCc
Q 013361 277 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF-SNFRQLT 354 (444)
Q Consensus 277 ~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~-~~~~~~~ 354 (444)
...++++ +|.+ +++.++.+++++.+|+++|.+++++++||+|+ +++++|++|.+|+++++...... ......+
T Consensus 13 l~~~~~~----iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~-~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~ 87 (156)
T 3k6e_A 13 LLGQEET----FLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD-EKQFVGTIGLRDIMAYQMEHDLSQEIMADTD 87 (156)
T ss_dssp HHTTGGG----GEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCCHHHHTTSB
T ss_pred hhccHHH----hCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEecchhhhhhhcccccccccccC
Confidence 3456777 6765 47899999999999999999999999999997 79999999999998876532211 1234678
Q ss_pred HHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013361 355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE 425 (444)
Q Consensus 355 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e 425 (444)
+.++|.+ ++.++++++++.++++.|.+++ .+||||++| +++|+||++||++.+.+.
T Consensus 88 v~~im~~------------~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g-~l~GiiT~~Dil~~~~~~ 143 (156)
T 3k6e_A 88 IVHMTKT------------DVAVVSPDFTITEVLHKLVDES--FLPVVDAEG-IFQGIITRKSILKAVNAL 143 (156)
T ss_dssp GGGTCBC------------SCCCBCTTCCHHHHHHHTTTSS--EEEEECTTS-BEEEEEEHHHHHHHHHHH
T ss_pred HHHhhcC------------CceecccccHHHHHHHHHHHcC--CeEEEecCC-EEEEEEEHHHHHHHHHHH
Confidence 9999985 8999999999999999998876 499999998 999999999999999653
No 18
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.77 E-value=1.6e-18 Score=145.52 Aligned_cols=123 Identities=16% Similarity=0.323 Sum_probs=106.6
Q ss_pred CcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013361 279 QPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQLTVR 356 (444)
Q Consensus 279 ~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~ 356 (444)
.++++ +|++ .+++++.+++++.+|++.|.+++++++||+|+ + ++++|++|.+|+++.+... ....++.
T Consensus 3 ~~v~d----iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~~vGivt~~dl~~~~~~~-----~~~~~v~ 72 (127)
T 3nqr_A 3 QRVRD----IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE-DKDHIEGILMAKDLLPFMRSD-----AEAFSMD 72 (127)
T ss_dssp CBHHH----HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS-STTCEEEEEEGGGGGGGGSTT-----CCCCCHH
T ss_pred cCHHH----hcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC-CCCcEEEEEEHHHHHHHHhcc-----CCCCCHH
Confidence 46777 6875 24899999999999999999999999999997 6 8999999999998876532 1356899
Q ss_pred HHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013361 357 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE 425 (444)
Q Consensus 357 ~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e 425 (444)
++|. ++.++++++++.++++.|.+++++++||+|++| +++|+||+.||++.+++|
T Consensus 73 ~~m~-------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~~~Giit~~dll~~l~ge 127 (127)
T 3nqr_A 73 KVLR-------------TAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFG-GVSGLVTIEDILELIVGE 127 (127)
T ss_dssp HHCB-------------CCCEEETTCBHHHHHHHHHHTTCCEEEEECTTS-CEEEEEEHHHHHHHC---
T ss_pred HHcC-------------CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEEHHHHHHHHhCC
Confidence 9996 578999999999999999999999999999887 999999999999998763
No 19
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.76 E-value=8.9e-19 Score=148.98 Aligned_cols=130 Identities=18% Similarity=0.313 Sum_probs=107.1
Q ss_pred CcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013361 279 QPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQLTVR 356 (444)
Q Consensus 279 ~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~ 356 (444)
.++++ +|++ .+++++.+++++.+|++.|.+++++++||+++ + ++++|+||.+|+++.+.... ....++.
T Consensus 3 ~~v~~----iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~-~~~~~vGivt~~dl~~~~~~~~----~~~~~v~ 73 (136)
T 3lfr_A 3 LQVRD----IMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGE-SHDDVLGVLLAKDLLPLILKAD----GDSDDVK 73 (136)
T ss_dssp CBHHH----HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS-STTCEEEEEEGGGGGGGGGSSS----GGGCCGG
T ss_pred CChHh----ccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcC-CCCcEEEEEEHHHHHHHHHhcc----CCCcCHH
Confidence 46777 6873 26899999999999999999999999999997 5 79999999999998865311 2356899
Q ss_pred HHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccch
Q 013361 357 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD 431 (444)
Q Consensus 357 ~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~ 431 (444)
++|+ +++++.+++++.+++++|.+++++++||+|++| +++|+||++||++.+.++..+.|+
T Consensus 74 ~~m~-------------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g-~lvGiit~~Dil~~l~~~~~de~~ 134 (136)
T 3lfr_A 74 KLLR-------------PATFVPESKRLNVLLREFRANHNHMAIVIDEYG-GVAGLVTIEDVLEQIVGDIEDEHD 134 (136)
T ss_dssp GTCB-------------CCCEEETTCBHHHHHHHHHHHTCCEEEEECTTS-CEEEEEEHHHHHTTC---------
T ss_pred HHcC-------------CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEEHHHHHHHHhCCCcCccc
Confidence 9996 689999999999999999999999999999987 999999999999999986555443
No 20
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.76 E-value=7.2e-18 Score=145.31 Aligned_cols=125 Identities=17% Similarity=0.310 Sum_probs=111.7
Q ss_pred cccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccC
Q 013361 276 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQL 353 (444)
Q Consensus 276 ~~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~~~~~~~~~~~~ 353 (444)
+...++++ +|++ .+++++.+++++.+|++.|.+++++++||+|+ + ++++|+||.+|+++.+... ...
T Consensus 20 l~~~~v~d----iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~lvGivt~~dl~~~~~~~------~~~ 88 (148)
T 3lv9_A 20 FEEKKIRE----IMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK-NKDDILGFVHIRDLYNQKINE------NKI 88 (148)
T ss_dssp GGTCBGGG----TSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS-STTSEEEEEEHHHHHHHHHHH------SCC
T ss_pred cCCCCHHH----ccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC-CCCcEEEEEEHHHHHHHHhcC------CCc
Confidence 35678999 7874 36899999999999999999999999999997 6 8999999999999886531 156
Q ss_pred cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013361 354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE 425 (444)
Q Consensus 354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e 425 (444)
++.++| . ++.++++++++.++++.|.+++.+++||+|++| +++|+||+.||++.++++
T Consensus 89 ~v~~~m-~------------~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g-~~~Giit~~dil~~l~~~ 146 (148)
T 3lv9_A 89 ELEEIL-R------------DIIYISENLTIDKALERIRKEKLQLAIVVDEYG-GTSGVVTIEDILEEIVGE 146 (148)
T ss_dssp CGGGTC-B------------CCEEEETTSBHHHHHHHHHHHTCSEEEEECTTS-SEEEEEEHHHHHHHHHHT
T ss_pred cHHHhc-C------------CCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEEHHHHHHHHhCc
Confidence 889999 4 889999999999999999999999999999988 999999999999999875
No 21
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.75 E-value=4.2e-18 Score=143.36 Aligned_cols=124 Identities=16% Similarity=0.344 Sum_probs=107.8
Q ss_pred ccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013361 277 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV 355 (444)
Q Consensus 277 ~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v 355 (444)
...++++ +|++ .+++++.+++++.+|++.|.+++++++||++++.++++|+||.+|+++.+.. ...++
T Consensus 3 ~~~~v~d----iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~-------~~~~v 71 (129)
T 3jtf_A 3 AERTVAD----IMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLE-------PALDI 71 (129)
T ss_dssp -CCBHHH----HCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTC-------TTSCG
T ss_pred CCCCHHH----hCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhcc-------CCcCH
Confidence 3467888 7873 2678999999999999999999999999999722899999999999887642 24578
Q ss_pred HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013361 356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE 425 (444)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e 425 (444)
.++|. +++++.+++++.++++.|.+++.+++||+|++| +++|+||+.||++.++++
T Consensus 72 ~~~m~-------------~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g-~~~Giit~~Dil~~l~ge 127 (129)
T 3jtf_A 72 RSLVR-------------PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHG-GISGLVTMEDVLEQIVGD 127 (129)
T ss_dssp GGGCB-------------CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-C-CEEEEEEHHHHHHHHHHT
T ss_pred HHHhC-------------CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEEHHHHHHHHhCC
Confidence 89986 678999999999999999999999999999987 999999999999999875
No 22
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.74 E-value=1.9e-17 Score=155.13 Aligned_cols=193 Identities=13% Similarity=0.193 Sum_probs=137.5
Q ss_pred CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccc-------
Q 013361 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD------- 274 (444)
Q Consensus 202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~------- 274 (444)
..+|+++|. .+++++.+++++.+|+++|.+++++++||+|++ |+++|++|..|+++.+........+.
T Consensus 6 ~~~v~~im~----~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 3l2b_A 6 KLKVEDLEM----DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWDSNILAKSATSLD 80 (245)
T ss_dssp CCBGGGSCC----BCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHH
T ss_pred cCcHHHhcC----CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHH
Confidence 457999998 668999999999999999999999999999987 89999999999999876432111000
Q ss_pred c---------------------------cccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCC---
Q 013361 275 I---------------------------IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--- 324 (444)
Q Consensus 275 ~---------------------------~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~--- 324 (444)
. +....+.+ .+..+.++.+ .+ -.++...+.+.+++++++++..
T Consensus 81 ~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~----~~~~~~ivIv-gd--r~~~~~~~i~~~~~~liit~~~~~~ 153 (245)
T 3l2b_A 81 NILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKE----FISEGDIAIA-GD--RAEIQAELIELKVSLLIVTGGHTPS 153 (245)
T ss_dssp HHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGG----TCCTTCEEEE-CS--CHHHHHHHHHTTCSEEEECTTCCCC
T ss_pred HHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHh----cCCCCCEEEE-CC--CHHHHHHHHHcCCCEEEECCCCCCC
Confidence 0 00111222 2333234333 33 3688888999999999888531
Q ss_pred --------CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCC
Q 013361 325 --------QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSV 396 (444)
Q Consensus 325 --------~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~ 396 (444)
++.+..+.+..|....... . ....++.++|++ .++.++++++++.+++++|.++++
T Consensus 154 ~~v~~~a~~~~~~~i~t~~d~~~~~~~--~---~~~~~v~~im~~-----------~~~~~~~~~~~~~~~~~~m~~~~~ 217 (245)
T 3l2b_A 154 KEIIELAKKNNITVITTPHDSFTASRL--I---VQSLPVDYVMTK-----------DNLVAVSTDDLVEDVKVTMSETRY 217 (245)
T ss_dssp HHHHHHHHHHTCEEEECSSCHHHHHHH--G---GGGSBHHHHSBC-----------TTCCCEETTSBHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCeEEEeCCChHHHHHH--H---hcCCceeeEecC-----------CccEEECCCCcHHHHHHHHHhcCC
Confidence 1123456666665443221 1 235689999982 288999999999999999999999
Q ss_pred CEEEEEeCCCCeEEEEEeHHHHHHHhH
Q 013361 397 HRIYVVAGEEAEVVGVITLRDVISCFI 423 (444)
Q Consensus 397 ~~l~VVd~~~~~lvGvIT~~DIl~~l~ 423 (444)
+++||+|++| +++|+||.+|++++..
T Consensus 218 ~~~pVvd~~~-~~~Giit~~dll~~~~ 243 (245)
T 3l2b_A 218 SNYPVIDENN-KVVGSIARFHLISTHK 243 (245)
T ss_dssp SEEEEECTTC-BEEEEEECC-------
T ss_pred ceEEEEcCCC-eEEEEEEHHHhhchhh
Confidence 9999999887 9999999999998653
No 23
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.74 E-value=2.2e-18 Score=152.27 Aligned_cols=131 Identities=24% Similarity=0.343 Sum_probs=111.0
Q ss_pred CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCC----------
Q 013361 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR---------- 270 (444)
Q Consensus 201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~---------- 270 (444)
...+|+|+|. .+++++.+++++.+|+++|.+++++++||+|++ |+++|+||..|+++.+......
T Consensus 16 ~~~~V~diM~----~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~ 90 (170)
T 4esy_A 16 RQVPIRDILT----SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN-GHLVGIITESDFLRGSIPFWIYEASEILSRAI 90 (170)
T ss_dssp HTSBGGGGCC----SCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT-SCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTS
T ss_pred cCCCHHHhcC----CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC-ccEEEEEEHHHHHHHHhhccccchhhhhhhcc
Confidence 3568999998 779999999999999999999999999999987 8999999999998765432100
Q ss_pred ------CcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013361 271 ------DWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 271 ------~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
.........++++ +|++ +++++.+++++.+|+++|.+++++++||+| +|+++|+||.+||++++..
T Consensus 91 ~~~~~~~~~~~~~~~~v~~----im~~-~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd--~g~lvGivt~~Dil~~l~~ 162 (170)
T 4esy_A 91 PAPEVEHLFETGRKLTASA----VMTQ-PVVTAAPEDSVGSIADQMRRHGIHRIPVVQ--DGVPVGIVTRRDLLKLLLL 162 (170)
T ss_dssp CHHHHHHHHHHHTTCBHHH----HCBC-CSCCBCTTSBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHTTTSCC
T ss_pred chhhHHhhhccccccchhh----hccc-CcccCCcchhHHHHHHHHHHcCCcEEEEEE--CCEEEEEEEHHHHHHHHHh
Confidence 0111223567888 7986 899999999999999999999999999998 6899999999999988753
No 24
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.74 E-value=1.3e-17 Score=138.48 Aligned_cols=119 Identities=28% Similarity=0.377 Sum_probs=107.1
Q ss_pred cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHh
Q 013361 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM 359 (444)
Q Consensus 280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m 359 (444)
++++ +|.+ ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+++.+|+++.+... ..++.++|
T Consensus 2 ~v~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~G~vt~~dl~~~~~~~-------~~~v~~~~ 68 (122)
T 3kpb_A 2 LVKD----ILSK-PPITAHSNISIMEAAKILIKHNINHLPIVDE-HGKLVGIITSWDIAKALAQN-------KKTIEEIM 68 (122)
T ss_dssp BHHH----HCCS-CCCCEETTSBHHHHHHHHHHHTCSCEEEECT-TSBEEEEECHHHHHHHHHTT-------CCBGGGTS
T ss_pred chHH----hhCC-CCEEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHHHHHHhc-------ccCHHHHh
Confidence 4566 6886 8999999999999999999999999999998 89999999999999887642 23799999
Q ss_pred cccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 360 NAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
.. ++.++++++++.++++.|.+++.+++||+|++| +++|+||..||++++..
T Consensus 69 ~~------------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g-~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 69 TR------------NVITAHEDEPVDHVAIKMSKYNISGVPVVDDYR-RVVGIVTSEDISRLFGG 120 (122)
T ss_dssp BS------------SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHC-
T ss_pred cC------------CCeEECCCCCHHHHHHHHHHhCCCeEEEECCCC-CEEEEEeHHHHHHHhhc
Confidence 74 889999999999999999999999999999987 99999999999998865
No 25
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.74 E-value=6e-17 Score=138.32 Aligned_cols=137 Identities=18% Similarity=0.383 Sum_probs=111.1
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013361 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR 356 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~ 356 (444)
...+++++.. +|.. +++++.+++++.+|++.|.+++++.+||+|+ +++++|+++.+|+++.+.... + .....++.
T Consensus 6 ~~~~v~~~~~-~~~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~-~-~~~~~~v~ 80 (144)
T 2nyc_A 6 LKIPIGDLNI-ITQD-NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGI-Y-NDLSLSVG 80 (144)
T ss_dssp GGSBGGGSSC-CBCS-SCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHTC------CCSBHH
T ss_pred hhcchhhcCC-CCCC-CceEECCCCcHHHHHHHHHHcCcceeeEEcC-CCcEEEEEcHHHHHHHhcccc-c-ccCCccHH
Confidence 4567777654 5665 8999999999999999999999999999998 799999999999998865321 1 12356899
Q ss_pred HHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013361 357 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE 425 (444)
Q Consensus 357 ~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e 425 (444)
++|..... ...++.++++++++.++++.|.+++.+++||+|++| +++|+||.+||++++..+
T Consensus 81 ~~m~~~~~------~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g-~~~Giit~~dil~~l~~~ 142 (144)
T 2nyc_A 81 EALMRRSD------DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG-RLVGVLTLSDILKYILLG 142 (144)
T ss_dssp HHHHHCC------------CEECTTSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHHHC
T ss_pred HHHhcCcc------ccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCC-CEEEEEEHHHHHHHHHhc
Confidence 99974100 001578999999999999999999999999999887 999999999999998764
No 26
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.74 E-value=4.6e-18 Score=147.51 Aligned_cols=131 Identities=18% Similarity=0.226 Sum_probs=110.1
Q ss_pred ccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEE-eCCCCeEEEEEeHHHHHHHhcCCccccccccCc
Q 013361 277 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVV-EGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT 354 (444)
Q Consensus 277 ~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVv-d~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~ 354 (444)
...++++ +|++ .+++++.+++++.+|++.|.+++++++||+ ++++++++|+||.+|+++.+... ...+
T Consensus 18 ~~~~v~~----iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~------~~~~ 87 (153)
T 3oco_A 18 NDKVASD----VMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID------DKAK 87 (153)
T ss_dssp HHCBHHH----HSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH------TTSB
T ss_pred CCCEeee----EecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC------CCCc
Confidence 4578899 7874 368999999999999999999999999999 54248999999999999886531 1568
Q ss_pred HHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccch
Q 013361 355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD 431 (444)
Q Consensus 355 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~ 431 (444)
+.++| . ++.++.+++++.++++.|.+++++++||+|++| +++|+||+.||++.+.++..+.++
T Consensus 88 v~~~m-~------------~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g-~~vGivt~~dil~~l~~~~~de~~ 150 (153)
T 3oco_A 88 ISTIM-R------------DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYG-GTSGIITDKDVYEELFGNLRDEQD 150 (153)
T ss_dssp GGGTC-B------------CCEEEETTSBHHHHHHHHHHTTCSCEEEECTTS-CEEEEECHHHHHHHHHC-------
T ss_pred HHHHh-C------------CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCC-CEEEEeeHHHHHHHHhccCCCccc
Confidence 99999 4 889999999999999999999999999999987 999999999999999986555443
No 27
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.73 E-value=5.1e-17 Score=137.88 Aligned_cols=125 Identities=26% Similarity=0.424 Sum_probs=110.4
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHH-HHHhcCCccccccccCcH
Q 013361 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKPELFSNFRQLTV 355 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dl-l~~l~~~~~~~~~~~~~v 355 (444)
...++++ +|++ ++.++.+++++.++++.|.+++++++||+|+ +++++|+++.+|+ ++++.... ....++
T Consensus 6 ~~~~v~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~----~~~~~v 75 (138)
T 2p9m_A 6 KNIKVKD----VMTK-NVITAKRHEGVVEAFEKMLKYKISSLPVIDD-ENKVIGIVTTTDIGYNLIRDKY----TLETTI 75 (138)
T ss_dssp TTCBGGG----TSBC-SCCCEETTSBHHHHHHHHHHHTCCEEEEECT-TCBEEEEEEHHHHHHHHTTTCC----CSSCBH
T ss_pred ccCCHHH----hhcC-CceEECCCCcHHHHHHHHHHCCCcEEEEECC-CCeEEEEEEHHHHHHHHHhhcc----cCCcCH
Confidence 4568888 7876 8999999999999999999999999999997 7999999999999 88765321 235689
Q ss_pred HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcC-----CCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKS-----VHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~-----~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
.++|.. ++.++++++++.++++.|.+++ .+++||+|++| +++|+||.+||++++..
T Consensus 76 ~~~m~~------------~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g-~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 76 GDVMTK------------DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNN-KLVGIISDGDIIRTISK 136 (138)
T ss_dssp HHHSCS------------SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTS-BEEEEEEHHHHHHHHHH
T ss_pred HHHhCC------------CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCC-eEEEEEEHHHHHHHHHh
Confidence 999984 7899999999999999999999 99999999877 99999999999998865
No 28
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.73 E-value=2.2e-17 Score=146.42 Aligned_cols=131 Identities=16% Similarity=0.198 Sum_probs=112.5
Q ss_pred ccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013361 277 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV 355 (444)
Q Consensus 277 ~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v 355 (444)
...++++ +|++ .+++++.+++++.+|++.|.+++++++||++++.++++|+||.+|++..+... ...++
T Consensus 34 ~~~~v~d----iM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~------~~~~v 103 (173)
T 3ocm_A 34 AERSIRS----IMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITE------GRVRR 103 (173)
T ss_dssp TTSCSTT----TSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHH------SSCCG
T ss_pred CCCCHHH----hCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcC------Ccchh
Confidence 5678999 7864 36899999999999999999999999999987228999999999999886421 13466
Q ss_pred HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccchh
Q 013361 356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDN 432 (444)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~~ 432 (444)
. ++. +++++++++++.+++++|.+++++.+||+|++| +++|+||+.||++.++++..+.++.
T Consensus 104 ~-~~~-------------~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g-~lvGiIT~~Dil~~l~~~i~de~~~ 165 (173)
T 3ocm_A 104 N-RLR-------------DPIIVHESIGILRLMDTLKRSRGQLVLVADEFG-AIEGLVTPIDVFEAIAGEFPDEDEL 165 (173)
T ss_dssp G-GSB-------------CCCEECGGGCHHHHHHHHHHSTTCCEEEECTTC-CEEEEECHHHHHHHHHCCCCCTTSC
T ss_pred H-hcC-------------CCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCC-CEEEEEeHHHHHHHHhCcCCCcccc
Confidence 6 443 789999999999999999999999999999887 9999999999999999877665554
No 29
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.72 E-value=6.1e-17 Score=136.57 Aligned_cols=123 Identities=24% Similarity=0.389 Sum_probs=109.9
Q ss_pred cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013361 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD 357 (444)
Q Consensus 278 ~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~ 357 (444)
..++++ +|.+ ++.++.+++++.+|++.|.+++++.+||+| +|+++|++|.+|+++.+.... ....++.+
T Consensus 3 ~~~v~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~~~~~~~----~~~~~v~~ 71 (133)
T 2ef7_A 3 EEIVKE----YMKT-QVISVTKDAKLNDIAKVMTEKNIGSVIVVD--GNKPVGIITERDIVKAIGKGK----SLETKAEE 71 (133)
T ss_dssp CCBGGG----TSBC-SCCEEETTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHTTC----CTTCBGGG
T ss_pred cccHHH----hccC-CCEEECCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEcHHHHHHHHhcCC----CcccCHHH
Confidence 467888 7886 799999999999999999999999999999 689999999999998876421 12568999
Q ss_pred HhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 358 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 358 ~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
+|.. ++.++++++++.++++.|.+++.+++||+|++| +++|+||..||++.+..
T Consensus 72 ~~~~------------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g-~~~Giit~~dll~~~~~ 125 (133)
T 2ef7_A 72 FMTA------------SLITIREDSPITGALALMRQFNIRHLPVVDDKG-NLKGIISIRDITRAIDD 125 (133)
T ss_dssp TSEE------------CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHH
T ss_pred HcCC------------CCEEECCCCCHHHHHHHHHHcCCCEEEEECCCC-eEEEEEEHHHHHHHHHH
Confidence 9975 889999999999999999999999999999887 99999999999999875
No 30
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.72 E-value=6.7e-17 Score=137.94 Aligned_cols=123 Identities=17% Similarity=0.220 Sum_probs=108.2
Q ss_pred cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCC--eEEEEEeHHHHHHHhcCCccccccccCcH
Q 013361 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQK--KIVGNVSIRDIRHLLLKPELFSNFRQLTV 355 (444)
Q Consensus 278 ~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~--~lvGiIt~~Dll~~l~~~~~~~~~~~~~v 355 (444)
..++++ +|.+ ++.++.+++++.++++.|.+++++.+||+|+ ++ +++|+||.+|+++.+.... ....++
T Consensus 4 ~~~v~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~~~Givt~~dl~~~~~~~~----~~~~~v 73 (141)
T 2rih_A 4 AIRTSE----LLKR-PPVSLPETATIREVATELAKNRVGLAVLTAR-DNPKRPVAVVSERDILRAVAQRL----DLDGPA 73 (141)
T ss_dssp -CBGGG----GCCS-CCEEEETTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEEEEHHHHHHHHHTTC----CTTSBS
T ss_pred ceEHHH----HhcC-CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCcceeEEEEEHHHHHHHHhcCC----CCCCCH
Confidence 357888 7886 8999999999999999999999999999997 67 9999999999998875421 125689
Q ss_pred HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
.++|.. ++.+++++ ++.++++.|.+++.+++||+|++| +++|+||.+||++.+..
T Consensus 74 ~~~m~~------------~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g-~~~Giit~~dll~~~~~ 128 (141)
T 2rih_A 74 MPIANS------------PITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNG-ELVGVLSIRDLCFERAI 128 (141)
T ss_dssp GGGCBC------------CCEEETTS-BHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHSCHHH
T ss_pred HHHcCC------------CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCC-cEEEEEEHHHHHHHHHH
Confidence 999984 88999999 999999999999999999999887 99999999999987653
No 31
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.72 E-value=1.2e-16 Score=135.56 Aligned_cols=126 Identities=21% Similarity=0.406 Sum_probs=110.4
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH-HhcCCccccccccCcH
Q 013361 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH-LLLKPELFSNFRQLTV 355 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~-~l~~~~~~~~~~~~~v 355 (444)
...++++ +|.+ ++.++.+++++.+|++.|.+++++.+||+|+ +|+++|+||.+|+++ ++.... ....++
T Consensus 5 ~~~~v~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~----~~~~~v 74 (138)
T 2yzi_A 5 MKAPIKV----YMTK-KLLGVKPSTSVQEASRLMMEFDVGSLVVIND-DGNVVGFFTKSDIIRRVIVPGL----PYDIPV 74 (138)
T ss_dssp TTSBGGG----TCBC-CCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTTTCC----CTTSBG
T ss_pred hhhhHHH----HhcC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHHhcCC----cccCCH
Confidence 4568888 7876 8999999999999999999999999999997 799999999999974 443211 235689
Q ss_pred HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCC
Q 013361 356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP 426 (444)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~ 426 (444)
.++|.. ++.++++++++.++++.|.+++++++ |+|++| +++|+||..||++++..+.
T Consensus 75 ~~~m~~------------~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g-~~~Giit~~dil~~~~~~~ 131 (138)
T 2yzi_A 75 ERIMTR------------NLITANVNTPLGEVLRKMAEHRIKHI-LIEEEG-KIVGIFTLSDLLEASRRRL 131 (138)
T ss_dssp GGTCBC------------SCCEEETTSBHHHHHHHHHHHTCSEE-EEEETT-EEEEEEEHHHHHHHHHCCS
T ss_pred HHHhhC------------CCeEECCCCcHHHHHHHHHhcCCCEE-EECCCC-CEEEEEEHHHHHHHHHHHH
Confidence 999984 88999999999999999999999999 999877 9999999999999998643
No 32
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.72 E-value=3.4e-17 Score=137.40 Aligned_cols=124 Identities=12% Similarity=0.123 Sum_probs=109.2
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013361 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR 356 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~ 356 (444)
...++++ +|.+ ++.++.+++++.+|++.|.+++++.+||+|+ ++++|++|.+|+++.+..... ...++.
T Consensus 3 ~s~~v~~----~m~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~~~----~~~~v~ 71 (128)
T 3gby_A 3 ASVTFSY----LAET-DYPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPT----VKEKLG 71 (128)
T ss_dssp TTCBGGG----GCBC-CSCCEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSSCC----TTCBCC
T ss_pred cceEHHH----hhcC-CcceECCCCCHHHHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhCCc----ccCcHH
Confidence 3467888 7886 7999999999999999999999999999994 899999999999987653211 235789
Q ss_pred HHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 357 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 357 ~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
++|.. ++.++++++++.++++.|.+++.+++||+|++| +++|+||..||++++..
T Consensus 72 ~~m~~------------~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g-~~~Giit~~dll~~l~~ 126 (128)
T 3gby_A 72 EELLE------------TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDG-RYEGVVSRKRILGFLAE 126 (128)
T ss_dssp GGGCB------------CCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTC-BEEEEEEHHHHHHHHHT
T ss_pred HHccC------------CCcEECCCCCHHHHHHHHHhCCCcEEEEECCCC-CEEEEEEHHHHHHHHHh
Confidence 99985 889999999999999999999999999999887 99999999999998864
No 33
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.72 E-value=3.3e-17 Score=143.93 Aligned_cols=135 Identities=19% Similarity=0.266 Sum_probs=114.8
Q ss_pred ccccccCcccccccCCCCC--CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccccc
Q 013361 273 FDIIASQPISDLGLPFMSS--DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF 350 (444)
Q Consensus 273 ~~~~~~~~v~~l~l~im~~--~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~ 350 (444)
...+...++++ +|.+ .+++++.+++++.+|++.|.+++++.+||+|+ +|+++|+||.+|+++.+.... ...
T Consensus 18 ~~~l~~~~v~d----im~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~--~~~ 90 (165)
T 3fhm_A 18 YFQGMATFVKD----LLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA-DGVVLGIFTERDLVKAVAGQG--AAS 90 (165)
T ss_dssp CCSSSSCBHHH----HHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHG--GGG
T ss_pred hHhhhhcCHHH----HhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHHhcC--Ccc
Confidence 34456778888 6874 36899999999999999999999999999998 799999999999998875321 123
Q ss_pred ccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCc
Q 013361 351 RQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPN 428 (444)
Q Consensus 351 ~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~ 428 (444)
...++.++|.. +++++++++++.++++.|.+++++++||+|+ | +++|+||..||++++..+...
T Consensus 91 ~~~~v~~~m~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g-~~~Giit~~dil~~~~~~~~~ 154 (165)
T 3fhm_A 91 LQQSVSVAMTK------------NVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-G-RLAGIISIGDVVKARIGEIEA 154 (165)
T ss_dssp GTSBGGGTSBS------------SCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHHTTCC---
T ss_pred ccCCHHHHhcC------------CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHHHHHHHHHHHH
Confidence 46789999984 8899999999999999999999999999999 7 999999999999999875443
No 34
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.71 E-value=3.9e-17 Score=142.33 Aligned_cols=127 Identities=15% Similarity=0.216 Sum_probs=108.8
Q ss_pred CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013361 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282 (444)
Q Consensus 203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~ 282 (444)
.+++++|... .+++++.+++|+.+|+.+|.+++++++||+|++ ++++|++|.+|+++++.... .....+...++.
T Consensus 15 ~~~~~iM~P~--~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~-~~lvGiit~~Di~~~~~~~~--~~~~~~~~~~v~ 89 (156)
T 3k6e_A 15 GQEETFLTPA--KNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE-KQFVGTIGLRDIMAYQMEHD--LSQEIMADTDIV 89 (156)
T ss_dssp TTGGGGEEET--TSSCCEETTSBHHHHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHT--CCHHHHTTSBGG
T ss_pred ccHHHhCcch--hHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEecchhhhhhhcc--cccccccccCHH
Confidence 3578899844 779999999999999999999999999999976 89999999999998876542 122334567899
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
+ +|++ ++.++++++++.++++.|.++++ +||+|+ +|+++|+||.+|+++.+.
T Consensus 90 ~----im~~-~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~-~g~l~GiiT~~Dil~~~~ 141 (156)
T 3k6e_A 90 H----MTKT-DVAVVSPDFTITEVLHKLVDESF--LPVVDA-EGIFQGIITRKSILKAVN 141 (156)
T ss_dssp G----TCBC-SCCCBCTTCCHHHHHHHTTTSSE--EEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred H----hhcC-CceecccccHHHHHHHHHHHcCC--eEEEec-CCEEEEEEEHHHHHHHHH
Confidence 9 7886 89999999999999999987764 999998 899999999999998875
No 35
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.71 E-value=4e-17 Score=137.71 Aligned_cols=125 Identities=18% Similarity=0.304 Sum_probs=107.4
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH-HhcCCccccccccCcH
Q 013361 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH-LLLKPELFSNFRQLTV 355 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~-~l~~~~~~~~~~~~~v 355 (444)
...++++ +|.+ ++.++.+++++.++++.|.+++++++||+|+ +++++|++|.+|+++ ++.... .....++
T Consensus 6 ~~~~v~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~---~~~~~~v 76 (133)
T 1y5h_A 6 TMTTARD----IMNA-GVTCVGEHETLTAAAQYMREHDIGALPICGD-DDRLHGMLTDRDIVIKGLAAGL---DPNTATA 76 (133)
T ss_dssp --CCHHH----HSEE-TCCCEETTSBHHHHHHHHHHHTCSEEEEECG-GGBEEEEEEHHHHHHTTGGGTC---CTTTSBH
T ss_pred hhcCHHH----HhcC-CceEeCCCCCHHHHHHHHHHhCCCeEEEECC-CCeEEEEEeHHHHHHHHHhcCC---CccccCH
Confidence 3457788 6876 7899999999999999999999999999987 799999999999984 544221 1235689
Q ss_pred HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
.++|.+ ++.++++++++.++++.|.+++.+++||+|+ | +++|+||..||++++..
T Consensus 77 ~~~m~~------------~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g-~~~Giit~~dil~~l~~ 131 (133)
T 1y5h_A 77 GELARD------------SIYYVDANASIQEMLNVMEEHQVRRVPVISE-H-RLVGIVTEADIARHLPE 131 (133)
T ss_dssp HHHHTT------------CCCCEETTCCHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHTCC-
T ss_pred HHHhcC------------CCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHHHHHHHh
Confidence 999984 8899999999999999999999999999998 6 99999999999998764
No 36
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.71 E-value=5e-17 Score=140.17 Aligned_cols=130 Identities=20% Similarity=0.255 Sum_probs=111.9
Q ss_pred ccccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcc--ccccc
Q 013361 275 IIASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL--FSNFR 351 (444)
Q Consensus 275 ~~~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~--~~~~~ 351 (444)
.+...++++ +|++ .+++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++.+..... .....
T Consensus 11 ~l~~~~v~~----im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~ 85 (150)
T 3lqn_A 11 EFQQIFVKD----LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-MYKLHGLISTAMILDGILGLERIEFERLE 85 (150)
T ss_dssp HHHHCBHHH----HSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHTBCSSSBCGGGGG
T ss_pred hhhcCChhh----cccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC-CCCEEEEEEHHHHHHHHHhhcccchhHHh
Confidence 345678899 7874 26899999999999999999999999999998 8999999999999998753211 11234
Q ss_pred cCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 352 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 352 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
..++.++|.. ++.++++++++.++++.|.++++ +||||++| +++|+||..||++++..
T Consensus 86 ~~~v~~~m~~------------~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g-~~~Giit~~dil~~l~~ 143 (150)
T 3lqn_A 86 EMKVEQVMKQ------------DIPVLKLEDSFAKALEMTIDHPF--ICAVNEDG-YFEGILTRRAILKLLNK 143 (150)
T ss_dssp GCBGGGTCBS------------SCCEEETTCBHHHHHHHHHHCSE--EEEECTTC-BEEEEEEHHHHHHHHHH
T ss_pred cCCHHHHhcC------------CCceeCCCCCHHHHHHHHHhCCE--EEEECCCC-cEEEEEEHHHHHHHHHH
Confidence 6789999984 88999999999999999999986 99999887 99999999999999876
No 37
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.71 E-value=1.5e-16 Score=136.95 Aligned_cols=126 Identities=18% Similarity=0.283 Sum_probs=111.5
Q ss_pred CCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccccccc
Q 013361 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS 278 (444)
Q Consensus 199 ~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~ 278 (444)
.+...+++++|... .+++++.+++++.+|++.|.+++++++||+|++.++++|++|..|+++.+... ..
T Consensus 19 ~l~~~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~---------~~ 87 (148)
T 3lv9_A 19 EFEEKKIREIMVPR--TDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINE---------NK 87 (148)
T ss_dssp GGGTCBGGGTSEET--TTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHH---------SC
T ss_pred ccCCCCHHHccccH--HHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcC---------CC
Confidence 45678899999832 37999999999999999999999999999997536999999999999887643 14
Q ss_pred CcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 279 ~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
.++++ +| . ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||..|+++.+.
T Consensus 88 ~~v~~----~m-~-~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~ 144 (148)
T 3lv9_A 88 IELEE----IL-R-DIIYISENLTIDKALERIRKEKLQLAIVVDE-YGGTSGVVTIEDILEEIV 144 (148)
T ss_dssp CCGGG----TC-B-CCEEEETTSBHHHHHHHHHHHTCSEEEEECT-TSSEEEEEEHHHHHHHHH
T ss_pred ccHHH----hc-C-CCeEECCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHh
Confidence 68889 78 5 7899999999999999999999999999997 799999999999998864
No 38
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.70 E-value=1.2e-16 Score=133.03 Aligned_cols=121 Identities=21% Similarity=0.346 Sum_probs=106.4
Q ss_pred cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHh
Q 013361 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM 359 (444)
Q Consensus 280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m 359 (444)
++++ +|.+ ++.++.+++++.+|++.|.+++.+.+||+| +|+++|++|.+|+++.+.... .....++.++|
T Consensus 2 ~v~~----~m~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~G~it~~dl~~~~~~~~---~~~~~~v~~~m 71 (125)
T 1pbj_A 2 RVED----VMVT-DVDTIDITASLEDVLRNYVENAKGSSVVVK--EGVRVGIVTTWDVLEAIAEGD---DLAEVKVWEVM 71 (125)
T ss_dssp CHHH----HCBC-SCCEEETTCBHHHHHHHHHHHCCCEEEEEE--TTEEEEEEEHHHHHHHHHHTC---CTTTSBHHHHC
T ss_pred CHHH----hcCC-CceEECCCCcHHHHHHHHHHcCCCEEEEEe--CCeeEEEEeHHHHHHHHhcCC---cccccCHHHHc
Confidence 4556 6776 899999999999999999999999999999 699999999999998765321 12366899999
Q ss_pred cccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 360 NAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
.+ ++.++++++++.++++.|.+++.+++||+|+ | +++|+||.+||++++..
T Consensus 72 ~~------------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~-~~~Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 72 ER------------DLVTISPRATIKEAAEKMVKNVVWRLLVEED-D-EIIGVISATDILRAKMA 122 (125)
T ss_dssp BC------------GGGEECTTSCHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHHHC-
T ss_pred CC------------CCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-C-EEEEEEEHHHHHHHHHh
Confidence 84 7899999999999999999999999999998 6 99999999999998865
No 39
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.70 E-value=1e-16 Score=138.07 Aligned_cols=130 Identities=25% Similarity=0.375 Sum_probs=107.9
Q ss_pred cCcccccccCCCCCC-CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCc----------c
Q 013361 278 SQPISDLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE----------L 346 (444)
Q Consensus 278 ~~~v~~l~l~im~~~-~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~----------~ 346 (444)
..++++ +|.+. +++++.+++++.+|++.|.+++++++||+|+ +++++|+||.+|+++++.... .
T Consensus 4 ~~~v~~----im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~ 78 (152)
T 4gqw_A 4 VYTVGE----FMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDE-DWKLVGLVSDYDLLALDSGDSTWKTFNAVQKL 78 (152)
T ss_dssp CSBGGG----TSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHTTCC----CCHHHHHHHTC
T ss_pred eEEhhh----ccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeC-CCeEEEEEEHHHHHHhhcccCcccchHHHHHH
Confidence 357788 67642 5899999999999999999999999999998 799999999999986533210 1
Q ss_pred ccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013361 347 FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE 425 (444)
Q Consensus 347 ~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e 425 (444)
.......++.++|.+ +++++++++++.++++.|.+++++++||+|++| +++|+||.+||++++...
T Consensus 79 ~~~~~~~~v~~~m~~------------~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g-~~~Giit~~dil~~~~~~ 144 (152)
T 4gqw_A 79 LSKTNGKLVGDLMTP------------APLVVEEKTNLEDAAKILLETKYRRLPVVDSDG-KLVGIITRGNVVRAALQI 144 (152)
T ss_dssp -----CCBHHHHSEE------------SCCCEESSSBHHHHHHHHHHSSCCEEEEECTTS-BEEEEEEHHHHHHHHHC-
T ss_pred HHHhccccHHHhcCC------------CceEECCCCcHHHHHHHHHHCCCCEEEEECCCC-cEEEEEEHHHHHHHHHhc
Confidence 112235689999985 788999999999999999999999999999887 999999999999999863
No 40
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.70 E-value=3.8e-17 Score=142.25 Aligned_cols=119 Identities=16% Similarity=0.352 Sum_probs=105.9
Q ss_pred cccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccC
Q 013361 276 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQL 353 (444)
Q Consensus 276 ~~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~~~~~~~~~~~~ 353 (444)
+...++++ +|++ .+++++++++++.+|++.|.+++++++||+++ + ++++|+||.+|+++.+... ...
T Consensus 35 l~~~~v~d----iM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~-~~~~lvGivt~~dl~~~~~~~------~~~ 103 (156)
T 3oi8_A 35 FSDLEVRD----AMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE-DKDEVLGILHAKDLLKYMFNP------EQF 103 (156)
T ss_dssp HTTCBGGG----TCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS-STTCEEEEEEGGGGGGGSSCG------GGC
T ss_pred cCCCCHhh----eeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC-CCCcEEEEEEHHHHHHHHHcC------Ccc
Confidence 35678999 7875 26899999999999999999999999999997 5 5999999999998876431 356
Q ss_pred cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHH
Q 013361 354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVI 419 (444)
Q Consensus 354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl 419 (444)
++.++|+ +++++++++++.++++.|.+++.+++||+|++| +++|+||+.||+
T Consensus 104 ~v~~im~-------------~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g-~~~Givt~~Dil 155 (156)
T 3oi8_A 104 HLKSILR-------------PAVFVPEGKSLTALLKEFREQRNHMAIVIDEYG-GTSGLVTFEDII 155 (156)
T ss_dssp CHHHHCB-------------CCCEEETTSBHHHHHHHHHHTTCCEEEEECTTS-SEEEEEEHHHHC
T ss_pred cHHHHcC-------------CCEEECCCCCHHHHHHHHHhcCCeEEEEECCCC-CEEEEEEHHHhc
Confidence 8999996 688999999999999999999999999999987 999999999986
No 41
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.70 E-value=1.1e-16 Score=145.85 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=111.0
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHc---CCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccC
Q 013361 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN---NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL 353 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~---~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~ 353 (444)
...++++ +|++ +++++.++.++.+|++.|.++ +++.+||+|+ +++++|+||.+|++.. ....
T Consensus 52 ~~~~v~~----iM~~-~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~-~~~lvGivt~~dll~~---------~~~~ 116 (205)
T 3kxr_A 52 SENEIGR----YTDH-QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE-ADKYLGTVRRYDIFKH---------EPHE 116 (205)
T ss_dssp CTTCGGG----GCBC-CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT-TCBEEEEEEHHHHTTS---------CTTS
T ss_pred CcchHHh----hccC-ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC-CCeEEEEEEHHHHHhC---------CCcc
Confidence 4568889 7987 899999999999999999997 7899999998 8999999999998643 1255
Q ss_pred cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccchhh
Q 013361 354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNY 433 (444)
Q Consensus 354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~~~ 433 (444)
++.++|.. +++++++++++.++++.|.+++++.+||||++| +++|+||..||++.+..+....+.++
T Consensus 117 ~v~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g-~lvGiIT~~Dil~~i~~e~~ed~~~~ 183 (205)
T 3kxr_A 117 PLISLLSE------------DSRALTANTTLLDAAEAIEHSREIELPVIDDAG-ELIGRVTLRAATALVREHYEAQLMAT 183 (205)
T ss_dssp BGGGGCCS------------SCCCEETTSCHHHHHHHHHTSSCSEEEEECTTS-BEEEEEEHHHHHHHHHHHHC------
T ss_pred hHHHHhcC------------CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCC-eEEEEEEHHHHHHHHHHHHHHHHHHh
Confidence 89999984 889999999999999999999999999999988 99999999999999987666666665
Q ss_pred hhhh
Q 013361 434 FGFS 437 (444)
Q Consensus 434 ~~~~ 437 (444)
.+..
T Consensus 184 ~g~~ 187 (205)
T 3kxr_A 184 AGMD 187 (205)
T ss_dssp ----
T ss_pred cCCC
Confidence 5543
No 42
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.70 E-value=9.6e-17 Score=147.22 Aligned_cols=163 Identities=13% Similarity=0.172 Sum_probs=105.9
Q ss_pred CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcc
Q 013361 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (444)
Q Consensus 202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v 281 (444)
..+++++|. .+++++.+++++.+|+++|.+++++++||+|++ ++++|++|..|+.+.+. ..++
T Consensus 12 ~~~~~~~~~----~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-~~l~Givt~~dl~~~~~------------~~~v 74 (213)
T 1vr9_A 12 HMKVKKWVT----QDFPMVEESATVRECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDL------------DSSV 74 (213)
T ss_dssp -CBGGGGCB----SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCT------------TSBS
T ss_pred ccCHHHhhc----CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC-CEEEEEEEHHHHHhhcC------------CCcH
Confidence 456778887 779999999999999999999999999999976 89999999999876432 3578
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcc
Q 013361 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNA 361 (444)
Q Consensus 282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~ 361 (444)
++ +|++ +++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+.... .+.+.+..
T Consensus 75 ~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~Dil~~~~~~~--------~~~~~~~~ 140 (213)
T 1vr9_A 75 FN----KVSL-PDFFVHEEDNITHALLLFLEHQEPYLPVVDE-EMRLKGAVSLHDFLEALIEAL--------AMDVPGIR 140 (213)
T ss_dssp GG----GCBC-TTCCEETTSBHHHHHHHHHHCCCSEEEEECT-TCBEEEEEEHHHHHHHHHHSC--------C-------
T ss_pred HH----HccC-CCEEECCCCcHHHHHHHHHHhCCCEEEEEcC-CCEEEEEEEHHHHHHHHHHHh--------cCCCCcEE
Confidence 88 7886 8999999999999999999999999999997 799999999999998765211 12222221
Q ss_pred cCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCC
Q 013361 362 VVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 406 (444)
Q Consensus 362 ~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~ 406 (444)
. .+.+.....++.++.+.|.+++++.++|++.++
T Consensus 141 l-----------~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~ 174 (213)
T 1vr9_A 141 F-----------SVLLEDKPGELRKVVDALALSNINILSVITTRS 174 (213)
T ss_dssp ---------------------------------------------
T ss_pred E-----------EEEeCCCCccHHHHHHHHHHCCCcEEEEEEEec
Confidence 0 111223444599999999999999999986654
No 43
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.70 E-value=1.6e-16 Score=138.75 Aligned_cols=127 Identities=21% Similarity=0.214 Sum_probs=108.8
Q ss_pred cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCc-----ccccccc
Q 013361 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE-----LFSNFRQ 352 (444)
Q Consensus 278 ~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~-----~~~~~~~ 352 (444)
..++++ +|++ +++++.+++++.+|++.|.+++++.+||+|+ +|+++|+||.+|+++.+.... .......
T Consensus 4 ~~~v~d----im~~-~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~ 77 (160)
T 2o16_A 4 MIKVED----MMTR-HPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFE 77 (160)
T ss_dssp CCBGGG----TSEE-SCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHHCC---------CC
T ss_pred cCcHHH----HhcC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHhhcccccccchhcc
Confidence 457888 7876 8999999999999999999999999999997 799999999999988764210 0011235
Q ss_pred CcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 353 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
.++.++|.. +++++++++++.++++.|.+++++++||+|+ | +++|+||..||++++..
T Consensus 78 ~~v~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g-~lvGiit~~dil~~~~~ 135 (160)
T 2o16_A 78 TPLFEVMHT------------DVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-D-VLVGIITDSDFVTIAIN 135 (160)
T ss_dssp CBHHHHSCS------------CEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-T-EEEEEECHHHHHHHHHH
T ss_pred cCHHHHhcC------------CCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-C-EEEEEEEHHHHHHHHHH
Confidence 689999984 8899999999999999999999999999998 6 99999999999998763
No 44
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.69 E-value=2.7e-16 Score=130.44 Aligned_cols=119 Identities=25% Similarity=0.430 Sum_probs=107.4
Q ss_pred cHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccc
Q 013361 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD 283 (444)
Q Consensus 204 ~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~ 283 (444)
+++++|. .+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+.+.+... ..++.+
T Consensus 2 ~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~----------~~~v~~ 66 (122)
T 3kpb_A 2 LVKDILS----KPPITAHSNISIMEAAKILIKHNINHLPIVDEH-GKLVGIITSWDIAKALAQN----------KKTIEE 66 (122)
T ss_dssp BHHHHCC----SCCCCEETTSBHHHHHHHHHHHTCSCEEEECTT-SBEEEEECHHHHHHHHHTT----------CCBGGG
T ss_pred chHHhhC----CCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHHHHHHhc----------ccCHHH
Confidence 6889998 679999999999999999999999999999976 8999999999999987653 237888
Q ss_pred cccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013361 284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 284 l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
+|.+ ++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||.+|+++++..
T Consensus 67 ----~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 67 ----IMTR-NVITAHEDEPVDHVAIKMSKYNISGVPVVDD-YRRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp ----TSBS-SCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHC-
T ss_pred ----HhcC-CCeEECCCCCHHHHHHHHHHhCCCeEEEECC-CCCEEEEEeHHHHHHHhhc
Confidence 7876 8899999999999999999999999999997 7999999999999998753
No 45
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.69 E-value=1.7e-16 Score=133.67 Aligned_cols=125 Identities=13% Similarity=0.143 Sum_probs=107.4
Q ss_pred CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013361 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282 (444)
Q Consensus 203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~ 282 (444)
.+++++|... .+++++.+++++.+|++.|.+++++++||++++.++++|++|..|+++.+..... +...++.
T Consensus 2 ~~v~~iM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~------~~~~~v~ 73 (130)
T 3hf7_A 2 VSVNDIMVPR--NEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE------FTKEIML 73 (130)
T ss_dssp CBHHHHSEEG--GGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC------CCHHHHH
T ss_pred cCHHHhCccH--HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc------cchhhHH
Confidence 4689999632 4589999999999999999999999999997644799999999999998865421 1235678
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
+ +| . ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+.
T Consensus 74 ~----~m-~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~ 126 (130)
T 3hf7_A 74 R----AA-D-EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIV 126 (130)
T ss_dssp H----HS-B-CCCEEETTCBHHHHHHHHHHHCCCEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred H----hc-c-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcC-CCCEEEEeeHHHHHHHHh
Confidence 8 67 3 6889999999999999999999999999998 899999999999998865
No 46
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.69 E-value=4.1e-17 Score=141.74 Aligned_cols=134 Identities=17% Similarity=0.235 Sum_probs=111.1
Q ss_pred cccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccc-cccccC
Q 013361 276 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF-SNFRQL 353 (444)
Q Consensus 276 ~~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~-~~~~~~ 353 (444)
+...++++ +|++ ++++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++.+...... ..+...
T Consensus 12 l~~~~v~d----im~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~-~~~~~Giit~~dl~~~~~~~~~~~~~~~~~ 86 (156)
T 3ctu_A 12 FLLGQEET----FLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD-EKQFVGTIGLRDIMAYQMEHDLSQEIMADT 86 (156)
T ss_dssp HHHTTGGG----GEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCCHHHHTTS
T ss_pred HHHHHHHH----HcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECC-CCEEEEEEcHHHHHHHHHhccccccccccC
Confidence 35568888 7873 37899999999999999999999999999998 89999999999999887532111 112356
Q ss_pred cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCcc
Q 013361 354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNH 429 (444)
Q Consensus 354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~ 429 (444)
++.++|.. ++.++++++++.++++.|.+++ ++||+|++| +++|+||.+||++++.......
T Consensus 87 ~v~~~m~~------------~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~~g-~~~Giit~~dil~~l~~~~~~~ 147 (156)
T 3ctu_A 87 DIVHMTKT------------DVAVVSPDFTITEVLHKLVDES--FLPVVDAEG-IFQGIITRKSILKAVNALLHDF 147 (156)
T ss_dssp BGGGGCBC------------SCCCBCSSCCHHHHHHHTTTSS--EEEEECTTS-BEEEEEETTHHHHHHHHHSCC-
T ss_pred cHHHhccC------------CceeeCCCCcHHHHHHHHHHcC--eEEEEcCCC-eEEEEEEHHHHHHHHHHHHHhh
Confidence 89999974 8899999999999999999886 799999887 9999999999999998644443
No 47
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.69 E-value=2.5e-16 Score=136.23 Aligned_cols=122 Identities=20% Similarity=0.388 Sum_probs=102.3
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013361 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.+++++.+|++.|.+++++.+||+|+ +|+++|+||.+|+++.+..... .....++.++|..... ..
T Consensus 30 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~vGivt~~dl~~~~~~~~~--~~~~~~v~~~m~~~~~------~~ 100 (152)
T 2uv4_A 30 NIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEKTY--NNLDVSVTKALQHRSH------YF 100 (152)
T ss_dssp SCCCEETTCBHHHHHHHHHHHCCSEEEEECT-TSBEEEEEEHHHHHHHHHCSSC--CCTTSBGGGGGGTCCH------HH
T ss_pred CceEeCCCCcHHHHHHHHHHcCCceEeEECC-CCcEEEEEeHHHHHHHhcchhh--hhhcchHHHHHhhhhc------cc
Confidence 7899999999999999999999999999998 7999999999999988754211 1235678899851000 00
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
.++.++.+++++.++++.|.+++.+++||+|++| +++|+||..||++.+..
T Consensus 101 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~~vGiit~~dil~~l~~ 151 (152)
T 2uv4_A 101 EGVLKCYLHETLETIINRLVEAEVHRLVVVDEND-VVKGIVSLSDILQALVL 151 (152)
T ss_dssp HTCSEECTTSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHC-
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCeEEEEECCCC-eEEEEEEHHHHHHHHHh
Confidence 1789999999999999999999999999999887 99999999999998754
No 48
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.69 E-value=2.8e-16 Score=137.03 Aligned_cols=129 Identities=19% Similarity=0.321 Sum_probs=109.9
Q ss_pred cccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013361 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV 355 (444)
Q Consensus 276 ~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v 355 (444)
+...++++ +|++ + +++.+++++.+|++.|.+++++++||+|+ +++++|+||.+|+++.+..... ....++
T Consensus 14 l~~~~v~~----im~~-~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~---~~~~~v 83 (159)
T 3fv6_A 14 LKKLQVKD----FQSI-P-VVIHENVSVYDAICTMFLEDVGTLFVVDR-DAVLVGVLSRKDLLRASIGQQE---LTSVPV 83 (159)
T ss_dssp HTTCBGGG----SCBC-C-CEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHTSCSC---TTTCBG
T ss_pred HhhCCHHH----HcCC-C-EEECCCCcHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHHHhhccCc---ccCcCH
Confidence 34568999 7875 4 59999999999999999999999999998 7999999999999987643221 245689
Q ss_pred HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCC--eEEEEEeHHHHHHHhHc
Q 013361 356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA--EVVGVITLRDVISCFIF 424 (444)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~--~lvGvIT~~DIl~~l~~ 424 (444)
.++|... .+++++++++++.++++.|.+++++++||+|++|+ +++|+||..||++++..
T Consensus 84 ~~~m~~~----------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~ 144 (159)
T 3fv6_A 84 HIIMTRM----------PNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS 144 (159)
T ss_dssp GGTSEET----------TSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred HHHHcCC----------CCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence 9999731 26789999999999999999999999999997521 89999999999999874
No 49
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.69 E-value=3.6e-16 Score=134.79 Aligned_cols=121 Identities=17% Similarity=0.364 Sum_probs=106.7
Q ss_pred cCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013361 278 SQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR 356 (444)
Q Consensus 278 ~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~ 356 (444)
..++++ +|.+ ++++++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+.... .....++.
T Consensus 27 ~~~v~d----im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~---~~~~~~v~ 98 (149)
T 3k2v_A 27 LLRVND----IMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD-DMNIIGIFTDGDLRRVFDTGV---DMRDASIA 98 (149)
T ss_dssp TSBGGG----TSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT-TCBEEEEEEHHHHHHHHCSSS---CCTTCBHH
T ss_pred ccCHHH----HhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC-CCcEEEEecHHHHHHHHhcCC---CcccCcHH
Confidence 458899 6763 16889999999999999999999999999998 799999999999999876422 13467899
Q ss_pred HHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013361 357 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 357 ~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++|.. ++.++++++++.++++.|.+++++++||+|+ + +++|+||..||++
T Consensus 99 ~~m~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~-~~~Giit~~dil~ 148 (149)
T 3k2v_A 99 DVMTR------------GGIRIRPGTLAVDALNLMQSRHITCVLVADG-D-HLLGVVHMHDLLR 148 (149)
T ss_dssp HHSEE------------SCCEECTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHTC
T ss_pred HHcCC------------CCeEECCCCCHHHHHHHHHHcCCCEEEEecC-C-EEEEEEEHHHhhc
Confidence 99985 7899999999999999999999999999997 3 9999999999975
No 50
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.68 E-value=4.9e-16 Score=135.16 Aligned_cols=128 Identities=14% Similarity=0.284 Sum_probs=109.7
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCe-EeEEeCCCCeEEEEEeHHHHHHHhcC--------Ccc-
Q 013361 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGG-IPVVEGQQKKIVGNVSIRDIRHLLLK--------PEL- 346 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~-lpVvd~~~~~lvGiIt~~Dll~~l~~--------~~~- 346 (444)
...++++ +|++ ++.++.+++++.+|++.|.+++++. +||+|+ + +++|+||.+|+++.+.. ...
T Consensus 14 ~~~~v~~----im~~-~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~-~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~ 86 (157)
T 1o50_A 14 KVKDVCK----LISL-KPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-N-KLVGMIPVMHLLKVSGFHFFGFIPKEELI 86 (157)
T ss_dssp BHHHHTT----SSCC-CCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-T-EEEEEEEHHHHHHHHHHHHHCCCC-----
T ss_pred ccccHhh----cccC-CCceECCCCCHHHHHHHHHhCCCCccEEEEEC-C-EEEEEEEHHHHHHHHhhhHHhhhccHHHH
Confidence 5567888 7886 8999999999999999999999999 999997 6 99999999999987431 000
Q ss_pred ---ccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhH
Q 013361 347 ---FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI 423 (444)
Q Consensus 347 ---~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~ 423 (444)
.......++.++|. . ++++++++++.++++.|.+++++++||+|++| +++|+||..||++.+.
T Consensus 87 ~~~~~~~~~~~v~~im~------------~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~~vGiit~~dll~~l~ 152 (157)
T 1o50_A 87 RSSMKRLIAKNASEIML------------D-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKG-EIVGDLNSLEILLALW 152 (157)
T ss_dssp --CCCCCSSCBHHHHCB------------C-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHcC------------C-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCC-EEEEEEEHHHHHHHHH
Confidence 01234668999998 4 88999999999999999999999999999877 9999999999999987
Q ss_pred cC
Q 013361 424 FE 425 (444)
Q Consensus 424 ~e 425 (444)
.+
T Consensus 153 ~~ 154 (157)
T 1o50_A 153 KG 154 (157)
T ss_dssp HS
T ss_pred Hh
Confidence 53
No 51
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.68 E-value=3.6e-16 Score=135.74 Aligned_cols=132 Identities=17% Similarity=0.287 Sum_probs=110.8
Q ss_pred cccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccc--ccccc
Q 013361 276 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF--SNFRQ 352 (444)
Q Consensus 276 ~~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~--~~~~~ 352 (444)
+...++++ +|.+ ++++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++.+.....+ .....
T Consensus 8 l~~~~v~~----im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~ 82 (157)
T 2emq_A 8 FMQMTVKP----FLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT-SYKLHGLISMTMMMDAILGLERIEFERLET 82 (157)
T ss_dssp --CCBSTT----TCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT-TCCEEEEEEHHHHHHHSBCSSSBCGGGGGT
T ss_pred HhhCcHHh----hccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC-CCCEEEEeeHHHHHHHHhcccccchHHhcC
Confidence 35678888 7863 26889999999999999999999999999997 79999999999999887542111 12345
Q ss_pred CcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCC
Q 013361 353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPP 427 (444)
Q Consensus 353 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~ 427 (444)
.++.++|.. ++.++++++++.++++.|.++++ +||+|++| +++|+||.+||++++.....
T Consensus 83 ~~v~~~m~~------------~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g-~~~Giit~~dil~~~~~~~~ 142 (157)
T 2emq_A 83 MKVEEVMNR------------NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDG-YFAGIFTRREVLKQLNKQLH 142 (157)
T ss_dssp CBGGGTCBC------------CCCEEETTSBHHHHHHHHHHSSE--EEEECSSS-SEEEEEEHHHHHHHHHHTTC
T ss_pred CcHHHHhCC------------CCceecCCCcHHHHHHHHhhCCE--EEEEcCCC-eEEEEEEHHHHHHHHHHHhh
Confidence 689999984 88999999999999999999987 99999887 99999999999999986443
No 52
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.68 E-value=3.6e-16 Score=138.32 Aligned_cols=128 Identities=11% Similarity=0.133 Sum_probs=109.0
Q ss_pred CCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccc
Q 013361 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA 277 (444)
Q Consensus 198 ~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~ 277 (444)
..+...+++++|... .+++++.+++++.+|++.|.+++++++||+|.+.++++|+||..|+++.+... .
T Consensus 37 ~~l~~~~v~diM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~---------~ 105 (172)
T 3lhh_A 37 FRLDERTISSLMVPR--SDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAG---------E 105 (172)
T ss_dssp ------CTTTTSEEG--GGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTT---------C
T ss_pred hccCCCCHHHhCccH--HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhc---------C
Confidence 346678899999833 45889999999999999999999999999987546999999999999987654 2
Q ss_pred cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013361 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 278 ~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
..++++ +| + +++++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+..
T Consensus 106 ~~~v~~----im-~-~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 106 RLELVD----LV-K-NCNFVPNSLSGMELLEHFRTTGSQMVFVVDE-YGDLKGLVTLQDMMDALTG 164 (172)
T ss_dssp CCCGGG----GC-B-CCEEEETTCCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHT
T ss_pred cccHHH----Hh-c-CCeEeCCCCCHHHHHHHHHHcCCeEEEEEeC-CCCEEEEeeHHHHHHHHhC
Confidence 468899 78 5 7999999999999999999999999999997 7999999999999988763
No 53
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.68 E-value=1.2e-16 Score=134.41 Aligned_cols=126 Identities=12% Similarity=0.183 Sum_probs=107.5
Q ss_pred CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013361 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (444)
Q Consensus 200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~ 279 (444)
+...+++++|... .+++++.+++++.+|++.|.+++++++||+|++.++++|++|..|+++.+.... ...
T Consensus 3 l~~~~v~~iM~~~--~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~--------~~~ 72 (130)
T 3i8n_A 3 AQDVPVTQVMTPR--PVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS--------GQK 72 (130)
T ss_dssp ----CCTTTSCCB--CCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT--------TTS
T ss_pred cCcCCHhhCCCcH--HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC--------CcC
Confidence 3466789999833 457899999999999999999999999999975479999999999999876542 356
Q ss_pred cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
++++ +|. ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+.
T Consensus 73 ~v~~----~m~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~~vGivt~~dil~~l~ 128 (130)
T 3i8n_A 73 QLGA----VMR--PIQVVLNNTALPKVFDQMMTHRLQLALVVDE-YGTVLGLVTLEDIFEHLV 128 (130)
T ss_dssp BHHH----HSE--ECCEEETTSCHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred CHHH----Hhc--CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcC-CCCEEEEEEHHHHHHHHc
Confidence 7888 674 5889999999999999999999999999997 899999999999998764
No 54
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.68 E-value=3.4e-16 Score=132.42 Aligned_cols=123 Identities=19% Similarity=0.381 Sum_probs=106.0
Q ss_pred cccccccCCCC---CCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013361 280 PISDLGLPFMS---SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR 356 (444)
Q Consensus 280 ~v~~l~l~im~---~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~ 356 (444)
++++ +|+ . ++.++.+++++.+|++.|.+++++++||+| +++++|++|.+|+++.+..... .....++.
T Consensus 7 ~v~~----im~~~~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~~~~~~~~--~~~~~~v~ 77 (135)
T 2rc3_A 7 TVKH----LLQEKGH-TVVAIGPDDSVFNAMQKMAADNIGALLVMK--DEKLVGILTERDFSRKSYLLDK--PVKDTQVK 77 (135)
T ss_dssp BHHH----HHHHHCC-CCCEECTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHGGGSSS--CGGGSBGG
T ss_pred eHHH----HHhcCCC-CcEEECCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEehHHHHHHHHHcCC--CcccCCHH
Confidence 6777 676 5 789999999999999999999999999998 6899999999999864322111 12466899
Q ss_pred HHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013361 357 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE 425 (444)
Q Consensus 357 ~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e 425 (444)
++|.. ++.++++++++.++++.|.+++++++||+| +| +++|+||.+||++++..+
T Consensus 78 ~~m~~------------~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g-~~~Giit~~dll~~~~~~ 132 (135)
T 2rc3_A 78 EIMTR------------QVAYVDLNNTNEDCMALITEMRVRHLPVLD-DG-KVIGLLSIGDLVKDAISQ 132 (135)
T ss_dssp GTSBC------------SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHHHC-
T ss_pred HhccC------------CCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CC-EEEEEEEHHHHHHHHHhc
Confidence 99984 889999999999999999999999999999 56 999999999999998763
No 55
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.68 E-value=4.1e-16 Score=131.07 Aligned_cols=123 Identities=11% Similarity=0.165 Sum_probs=106.2
Q ss_pred CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCc
Q 013361 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP 280 (444)
Q Consensus 201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~ 280 (444)
...+++++|... .+++++.+++++.+|++.|.+++++++||+|++.++++|++|..|+++.+.. ...+
T Consensus 3 ~~~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~----------~~~~ 70 (129)
T 3jtf_A 3 AERTVADIMVPR--SRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLE----------PALD 70 (129)
T ss_dssp -CCBHHHHCEEG--GGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTC----------TTSC
T ss_pred CCCCHHHhCccH--HHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhcc----------CCcC
Confidence 356799999833 4588999999999999999999999999999744799999999999887642 2457
Q ss_pred ccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 281 v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
+++ +|. ++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||.+|+++.+.
T Consensus 71 v~~----~m~--~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~g~~~Giit~~Dil~~l~ 125 (129)
T 3jtf_A 71 IRS----LVR--PAVFIPEVKRLNVLLREFRASRNHLAIVIDE-HGGISGLVTMEDVLEQIV 125 (129)
T ss_dssp GGG----GCB--CCCEEETTCBHHHHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHHHHH
T ss_pred HHH----HhC--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHh
Confidence 888 674 4789999999999999999999999999997 799999999999998764
No 56
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.67 E-value=6.5e-16 Score=130.23 Aligned_cols=122 Identities=24% Similarity=0.413 Sum_probs=109.0
Q ss_pred CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcc
Q 013361 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (444)
Q Consensus 202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v 281 (444)
..+++++|. .+++++.+++++.+|++.|.+++++++||+| + ++++|++|..|+.+.+..... ...++
T Consensus 3 ~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~-------~~~~v 69 (133)
T 2ef7_A 3 EEIVKEYMK----TQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G-NKPVGIITERDIVKAIGKGKS-------LETKA 69 (133)
T ss_dssp CCBGGGTSB----CSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHTTCC-------TTCBG
T ss_pred cccHHHhcc----CCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-CEEEEEEcHHHHHHHHhcCCC-------cccCH
Confidence 567899998 6689999999999999999999999999999 5 899999999999988765421 34688
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
.+ +|.+ ++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||.+|+++.+.
T Consensus 70 ~~----~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~ 124 (133)
T 2ef7_A 70 EE----FMTA-SLITIREDSPITGALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAID 124 (133)
T ss_dssp GG----TSEE-CCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred HH----HcCC-CCEEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHH
Confidence 88 7876 7899999999999999999999999999997 799999999999998865
No 57
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.67 E-value=2.7e-16 Score=131.79 Aligned_cols=124 Identities=12% Similarity=0.237 Sum_probs=106.3
Q ss_pred CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcc
Q 013361 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (444)
Q Consensus 202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v 281 (444)
..+++++|... .+++++.+++++.+|++.|.+++++++||+|++.++++|++|..|+++.+.... ...++
T Consensus 2 ~~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~--------~~~~v 71 (127)
T 3nqr_A 2 DQRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA--------EAFSM 71 (127)
T ss_dssp -CBHHHHSEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTC--------CCCCH
T ss_pred CcCHHHhcccH--HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccC--------CCCCH
Confidence 35789999832 348899999999999999999999999999975469999999999998775431 35678
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
++ +|. ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+.
T Consensus 72 ~~----~m~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~ 125 (127)
T 3nqr_A 72 DK----VLR--TAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIV 125 (127)
T ss_dssp HH----HCB--CCCEEETTCBHHHHHHHHHHTTCCEEEEECT-TSCEEEEEEHHHHHHHC-
T ss_pred HH----HcC--CCeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHh
Confidence 88 674 4789999999999999999999999999998 899999999999998754
No 58
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.67 E-value=4.6e-16 Score=135.23 Aligned_cols=128 Identities=18% Similarity=0.350 Sum_probs=109.0
Q ss_pred CcccccccCCCCC-----CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccC
Q 013361 279 QPISDLGLPFMSS-----DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL 353 (444)
Q Consensus 279 ~~v~~l~l~im~~-----~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~ 353 (444)
.++++ +|.+ .++.++.+++++.+|++.|.+++++.+||++ +++++|+||.+|+++.+..... .....
T Consensus 7 ~~v~d----im~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~--~~~~~ 78 (157)
T 4fry_A 7 TTVAQ----ILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQER--SSKAT 78 (157)
T ss_dssp CBHHH----HHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGTC--CSSSC
T ss_pred HHHHH----HHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhccC--Ccccc
Confidence 35667 5652 2579999999999999999999999999965 7999999999999988653221 12467
Q ss_pred cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCc
Q 013361 354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPN 428 (444)
Q Consensus 354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~ 428 (444)
++.++|.+ ++.++++++++.+++++|.+++++++||+| +| +++|+||..||++++..+...
T Consensus 79 ~v~~~m~~------------~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g-~~~Giit~~dil~~l~~~~~~ 139 (157)
T 4fry_A 79 RVEEIMTA------------KVRYVEPSQSTDECMALMTEHRMRHLPVLD-GG-KLIGLISIGDLVKSVIADQQF 139 (157)
T ss_dssp BHHHHSBS------------SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHHHTTCCC
T ss_pred CHHHHcCC------------CCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CC-EEEEEEEHHHHHHHHHHHHHh
Confidence 89999985 789999999999999999999999999999 56 999999999999999976544
No 59
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.67 E-value=3.1e-16 Score=133.14 Aligned_cols=125 Identities=11% Similarity=0.179 Sum_probs=107.3
Q ss_pred CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcc
Q 013361 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (444)
Q Consensus 202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v 281 (444)
..+++++|... .+++++.+++++.+|+++|.+++++++||+|++.++++|++|..|+++.+.... ....++
T Consensus 2 ~~~v~~iM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~-------~~~~~v 72 (136)
T 3lfr_A 2 DLQVRDIMVPR--SQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKAD-------GDSDDV 72 (136)
T ss_dssp -CBHHHHSEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSS-------GGGCCG
T ss_pred CCChHhccccH--HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhcc-------CCCcCH
Confidence 35789999833 458999999999999999999999999999975369999999999998775321 145688
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
++ +|+ ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+.
T Consensus 73 ~~----~m~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~ 126 (136)
T 3lfr_A 73 KK----LLR--PATFVPESKRLNVLLREFRANHNHMAIVIDE-YGGVAGLVTIEDVLEQIV 126 (136)
T ss_dssp GG----TCB--CCCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHTTC-
T ss_pred HH----HcC--CCeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHh
Confidence 89 785 4899999999999999999999999999998 899999999999998764
No 60
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.67 E-value=8.7e-16 Score=134.11 Aligned_cols=135 Identities=16% Similarity=0.233 Sum_probs=108.6
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeC-CCCeEEEEEeHHHHHHHhcCCcc-ccccccCc
Q 013361 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG-QQKKIVGNVSIRDIRHLLLKPEL-FSNFRQLT 354 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~-~~~~lvGiIt~~Dll~~l~~~~~-~~~~~~~~ 354 (444)
...++++ +|.+ +++++.+++++.+|++.|.+++++++||+|+ ++++++|+||.+|+++.+..... .......+
T Consensus 11 ~~~~v~d----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~ 85 (164)
T 2pfi_A 11 HHVRVEH----FMNH-SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQC 85 (164)
T ss_dssp CSCBHHH----HCBC-CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCB
T ss_pred cCCCHHH----HcCC-CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccch
Confidence 4567888 7886 8999999999999999999999999999984 25899999999999988743211 00112457
Q ss_pred HHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 355 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
+.++|..... ....++++++++++.++++.|.+++.+++||+| +| +++|+||.+||++++..
T Consensus 86 v~~~m~~~~~------~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g-~l~Giit~~dil~~~~~ 147 (164)
T 2pfi_A 86 LQDILARGCP------TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RG-RAVGCVSWVEMKKAISN 147 (164)
T ss_dssp HHHHHHTTCC------CBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TT-EEEEEEEHHHHHHHHHH
T ss_pred hhhhhccccc------ccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CC-EEEEEEEHHHHHHHHHh
Confidence 9999984100 000178999999999999999999999999999 56 99999999999999874
No 61
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.67 E-value=2.3e-16 Score=136.75 Aligned_cols=126 Identities=14% Similarity=0.251 Sum_probs=110.3
Q ss_pred CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEe-cCCCCcEEEEEeHHHHHHHhhcCCCCCccccccc
Q 013361 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPII-EPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS 278 (444)
Q Consensus 200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVv-d~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~ 278 (444)
+...+++++|... .+++++.+++++.+|++.|.+++++++||+ +++.++++|+||..|+++.+... ..
T Consensus 17 l~~~~v~~iM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~---------~~ 85 (153)
T 3oco_A 17 MNDKVASDVMVDR--TSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID---------DK 85 (153)
T ss_dssp HHHCBHHHHSEEG--GGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH---------TT
T ss_pred cCCCEeeeEecch--hheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC---------CC
Confidence 3467899999832 368999999999999999999999999999 65337999999999999887654 25
Q ss_pred CcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013361 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 279 ~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
.++++ +| + ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+..
T Consensus 86 ~~v~~----~m-~-~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~~vGivt~~dil~~l~~ 143 (153)
T 3oco_A 86 AKIST----IM-R-DIVSVPENMKVPDVMEEMSAHRVPMAIVIDE-YGGTSGIITDKDVYEELFG 143 (153)
T ss_dssp SBGGG----TC-B-CCEEEETTSBHHHHHHHHHHTTCSCEEEECT-TSCEEEEECHHHHHHHHHC
T ss_pred CcHHH----Hh-C-CCeEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCCEEEEeeHHHHHHHHhc
Confidence 68899 78 5 7999999999999999999999999999997 7999999999999988763
No 62
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.67 E-value=1.7e-16 Score=140.89 Aligned_cols=128 Identities=21% Similarity=0.368 Sum_probs=106.5
Q ss_pred CcccccccCCCCCC-CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCc------------
Q 013361 279 QPISDLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE------------ 345 (444)
Q Consensus 279 ~~v~~l~l~im~~~-~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~------------ 345 (444)
.++++ +|.+. +++++.+++++.+|++.|.+++++++||+|+ +++++|+||.+|++++.....
T Consensus 4 ~~v~d----im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~ 78 (180)
T 3sl7_A 4 YTVGD----FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDD-NWTLVGVVSDYDLLALDSISGRSQNDTNLFPDV 78 (180)
T ss_dssp CBHHH----HSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHTCC-----------------
T ss_pred eeHHH----hcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECC-CCeEEEEEEHHHHHhhhhhccccCCcccccccc
Confidence 35667 57642 5889999999999999999999999999998 899999999999985321000
Q ss_pred ------------cccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEE
Q 013361 346 ------------LFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVI 413 (444)
Q Consensus 346 ------------~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvI 413 (444)
........++.++|.+ +++++++++++.+++++|.+++++++||+|++| +++|+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~~vGii 145 (180)
T 3sl7_A 79 DSTWKTFNELQKLISKTYGKVVGDLMTP------------SPLVVRDSTNLEDAARLLLETKFRRLPVVDADG-KLIGIL 145 (180)
T ss_dssp --CCCSHHHHHHHHHTTTTCBHHHHSEE------------SCCCEETTSBHHHHHHHHTTSTTCEEEEECTTC-BEEEEE
T ss_pred cchhhhhHHHHHHHhccccccHHHHhCC------------CceEeCCCCcHHHHHHHHHHcCCCEEEEECCCC-eEEEEE
Confidence 0011235689999985 789999999999999999999999999999887 999999
Q ss_pred eHHHHHHHhHc
Q 013361 414 TLRDVISCFIF 424 (444)
Q Consensus 414 T~~DIl~~l~~ 424 (444)
|.+||++++..
T Consensus 146 t~~dil~~~~~ 156 (180)
T 3sl7_A 146 TRGNVVRAALQ 156 (180)
T ss_dssp EHHHHHHHHHH
T ss_pred EHHHHHHHHHH
Confidence 99999999874
No 63
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.66 E-value=6e-16 Score=138.39 Aligned_cols=126 Identities=24% Similarity=0.313 Sum_probs=110.5
Q ss_pred cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013361 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD 357 (444)
Q Consensus 278 ~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~ 357 (444)
..++++ +|++ +++++.+++++.+|++.|.+++++++||+|+ +|+++|++|.+|++..+.... ......++.+
T Consensus 8 ~~~v~~----im~~-~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~-~g~~vGivt~~dl~~~~~~~~--~~~~~~~v~~ 79 (184)
T 1pvm_A 8 FMRVEK----IMNS-NFKTVNWNTTVFDAVKIMNENHLYGLVVKDD-NGNDVGLLSERSIIKRFIPRN--KKPDEVPIRL 79 (184)
T ss_dssp CCBGGG----TSBT-TCCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHTGGGC--CCGGGSBGGG
T ss_pred ccCHHH----hcCC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhcc--cCcccCCHHH
Confidence 367888 7876 8999999999999999999999999999997 799999999999998765211 1124568999
Q ss_pred HhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 358 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 358 ~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
+|.. ++.++.+++++.+++++|.+++.+++||+|++| +++|+||..||++++..
T Consensus 80 im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~~~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 80 VMRK------------PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPG-RVVGIVTLTDLSRYLSR 133 (184)
T ss_dssp TSBS------------SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTC-CEEEEEEHHHHTTTSCH
T ss_pred HhCC------------CCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCC-eEEEEEEHHHHHHHHHh
Confidence 9984 789999999999999999999999999999887 99999999999987764
No 64
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.66 E-value=4.3e-16 Score=130.62 Aligned_cols=122 Identities=13% Similarity=0.200 Sum_probs=108.6
Q ss_pred CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcc
Q 013361 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (444)
Q Consensus 202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v 281 (444)
..+++++|. .++.++.+++++.+|++.|.+++++++||+|+ ++++|++|..|+.+.+..... ...++
T Consensus 4 s~~v~~~m~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~~~-------~~~~v 70 (128)
T 3gby_A 4 SVTFSYLAE----TDYPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPT-------VKEKL 70 (128)
T ss_dssp TCBGGGGCB----CCSCCEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSSCC-------TTCBC
T ss_pred ceEHHHhhc----CCcceECCCCCHHHHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhCCc-------ccCcH
Confidence 567899998 67999999999999999999999999999997 799999999999987654321 23578
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
++ +|.+ ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+.
T Consensus 71 ~~----~m~~-~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~ 125 (128)
T 3gby_A 71 GE----ELLE-TVRSYRPGEQLFDNLISVAAAKCSVVPLADE-DGRYEGVVSRKRILGFLA 125 (128)
T ss_dssp CG----GGCB-CCCCBCTTSBGGGSHHHHHHCSSSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred HH----HccC-CCcEECCCCCHHHHHHHHHhCCCcEEEEECC-CCCEEEEEEHHHHHHHHH
Confidence 88 7886 8899999999999999999999999999997 899999999999998875
No 65
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.66 E-value=4.9e-16 Score=135.40 Aligned_cols=130 Identities=18% Similarity=0.251 Sum_probs=110.4
Q ss_pred cccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcc--cccccc
Q 013361 276 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL--FSNFRQ 352 (444)
Q Consensus 276 ~~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~--~~~~~~ 352 (444)
+...++++ +|.+ .+++++.+++++.+|++.|.+++++.+||+|+ +++++|+||.+|++..+..... +.....
T Consensus 11 l~~~~v~~----im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~~~lvGivt~~dl~~~~~~~~~~~~~~~~~ 85 (159)
T 1yav_A 11 LLEATVGQ----FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP-SYRLHGLIGTNMIMNSIFGLERIEFEKLDQ 85 (159)
T ss_dssp CTTCBHHH----HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT-TCBEEEEEEHHHHHHHHBCSSSBCGGGTTT
T ss_pred HhHhhHHH----HhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC-CCCEEEEeEHHHHHHHhhhhcccchhhhcc
Confidence 35578888 6753 15889999999999999999999999999998 7899999999999988764221 111346
Q ss_pred CcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013361 353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE 425 (444)
Q Consensus 353 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e 425 (444)
.++.++|.. ++.++.+++++.++++.|.++++ +||+|++| +++|+||.+||++++..+
T Consensus 86 ~~v~~~m~~------------~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g-~~vGiit~~dil~~~~~~ 143 (159)
T 1yav_A 86 ITVEEVMLT------------DIPRLHINDPIMKGFGMVINNGF--VCVENDEQ-VFEGIFTRRVVLKELNKH 143 (159)
T ss_dssp SBHHHHSBC------------SCCEEETTSBHHHHHHHTTTCSE--EEEECTTC-BEEEEEEHHHHHHHHHHH
T ss_pred CCHHHhcCC------------CCceEcCCCCHHHHHHHHHhCCE--EEEEeCCC-eEEEEEEHHHHHHHHHHH
Confidence 789999985 88999999999999999999876 99999877 999999999999998753
No 66
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.66 E-value=1e-15 Score=130.48 Aligned_cols=122 Identities=16% Similarity=0.245 Sum_probs=107.4
Q ss_pred CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCC--cEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013361 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP--DIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (444)
Q Consensus 202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~--~l~Givt~~di~~~l~~~~~~~~~~~~~~~ 279 (444)
..+++++|. .+++++.+++++.+|++.|.+++++++||+|++ + +++|++|..|+++.+..... ...
T Consensus 4 ~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~~~Givt~~dl~~~~~~~~~-------~~~ 71 (141)
T 2rih_A 4 AIRTSELLK----RPPVSLPETATIREVATELAKNRVGLAVLTARD-NPKRPVAVVSERDILRAVAQRLD-------LDG 71 (141)
T ss_dssp -CBGGGGCC----SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEEEEHHHHHHHHHTTCC-------TTS
T ss_pred ceEHHHHhc----CCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CcceeEEEEEHHHHHHHHhcCCC-------CCC
Confidence 356889998 679999999999999999999999999999986 7 89999999999998765421 356
Q ss_pred cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
++.+ +|.+ ++.++.++ ++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+.
T Consensus 72 ~v~~----~m~~-~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~ 127 (141)
T 2rih_A 72 PAMP----IANS-PITVLDTD-PVHVAAEKMRRHNIRHVVVVNK-NGELVGVLSIRDLCFERA 127 (141)
T ss_dssp BSGG----GCBC-CCEEETTS-BHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHSCHH
T ss_pred CHHH----HcCC-CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcC-CCcEEEEEEHHHHHHHHH
Confidence 8888 7876 89999999 9999999999999999999997 799999999999986643
No 67
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.66 E-value=7.4e-16 Score=132.75 Aligned_cols=129 Identities=18% Similarity=0.297 Sum_probs=110.6
Q ss_pred CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcc
Q 013361 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (444)
Q Consensus 202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v 281 (444)
..+++++|... .+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++.+...... ........++
T Consensus 14 ~~~v~~im~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~-~~~~~~~~~v 89 (150)
T 3lqn_A 14 QIFVKDLMISS--EKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM-YKLHGLISTAMILDGILGLERI-EFERLEEMKV 89 (150)
T ss_dssp HCBHHHHSEEG--GGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHTBCSSSB-CGGGGGGCBG
T ss_pred cCChhhcccCC--CceEEECCCCcHHHHHHHHHHcCCcEEEEECCC-CCEEEEEEHHHHHHHHHhhccc-chhHHhcCCH
Confidence 56799999832 358999999999999999999999999999976 8999999999999988643211 1223356789
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
.+ +|.+ ++.++.+++++.++++.|.++++ +||+|+ +|+++|+||.+|+++.+.
T Consensus 90 ~~----~m~~-~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~-~g~~~Giit~~dil~~l~ 142 (150)
T 3lqn_A 90 EQ----VMKQ-DIPVLKLEDSFAKALEMTIDHPF--ICAVNE-DGYFEGILTRRAILKLLN 142 (150)
T ss_dssp GG----TCBS-SCCEEETTCBHHHHHHHHHHCSE--EEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred HH----HhcC-CCceeCCCCCHHHHHHHHHhCCE--EEEECC-CCcEEEEEEHHHHHHHHH
Confidence 99 7886 89999999999999999999987 999998 899999999999999875
No 68
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.65 E-value=2.1e-15 Score=127.92 Aligned_cols=125 Identities=18% Similarity=0.307 Sum_probs=109.2
Q ss_pred CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHH-HhhcCCCCCccccccc
Q 013361 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ-GLEGCKGRDWFDIIAS 278 (444)
Q Consensus 200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~-~l~~~~~~~~~~~~~~ 278 (444)
+...+++++|. .+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++ ++.... ...
T Consensus 4 l~~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~-------~~~ 71 (138)
T 2yzi_A 4 DMKAPIKVYMT----KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGL-------PYD 71 (138)
T ss_dssp CTTSBGGGTCB----CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCC-------CTT
T ss_pred hhhhhHHHHhc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHhcCC-------ccc
Confidence 45678999998 679999999999999999999999999999976 89999999999984 443321 145
Q ss_pred CcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013361 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 279 ~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
.++.+ +|.+ ++.++.+++++.++++.|.+++++.+ |+|+ +|+++|+||.+|+++.+..
T Consensus 72 ~~v~~----~m~~-~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~-~g~~~Giit~~dil~~~~~ 129 (138)
T 2yzi_A 72 IPVER----IMTR-NLITANVNTPLGEVLRKMAEHRIKHI-LIEE-EGKIVGIFTLSDLLEASRR 129 (138)
T ss_dssp SBGGG----TCBC-SCCEEETTSBHHHHHHHHHHHTCSEE-EEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred CCHHH----HhhC-CCeEECCCCcHHHHHHHHHhcCCCEE-EECC-CCCEEEEEEHHHHHHHHHH
Confidence 68888 7876 89999999999999999999999999 9997 7999999999999988763
No 69
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.65 E-value=1.6e-15 Score=133.14 Aligned_cols=133 Identities=18% Similarity=0.190 Sum_probs=114.4
Q ss_pred cCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccccc
Q 013361 197 EEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII 276 (444)
Q Consensus 197 ~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~ 276 (444)
...+...+|+++|... ..+++++.+++++.+|++.|.+++++++||+|++ ++++|+||..|+++.+..... ..
T Consensus 18 ~~~l~~~~v~dim~~~-~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~-----~~ 90 (165)
T 3fhm_A 18 YFQGMATFVKDLLDRK-GRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD-GVVLGIFTERDLVKAVAGQGA-----AS 90 (165)
T ss_dssp CCSSSSCBHHHHHHHH-CSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHGG-----GG
T ss_pred hHhhhhcCHHHHhccC-CCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHhcCC-----cc
Confidence 3456678999999831 1358999999999999999999999999999977 899999999999988765310 12
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013361 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
...++.+ +|.+ ++.++.+++++.++++.|.+++++.+||+|+ |+++|+||.+|+++.+..
T Consensus 91 ~~~~v~~----~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~~~~ 150 (165)
T 3fhm_A 91 LQQSVSV----AMTK-NVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVVKARIG 150 (165)
T ss_dssp GTSBGGG----TSBS-SCCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHTTC
T ss_pred ccCCHHH----HhcC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHH
Confidence 4578999 7876 8999999999999999999999999999994 899999999999998764
No 70
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.65 E-value=1.2e-15 Score=129.28 Aligned_cols=125 Identities=24% Similarity=0.431 Sum_probs=109.2
Q ss_pred CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHH-HHHhhcCCCCCccccccc
Q 013361 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAV-VQGLEGCKGRDWFDIIAS 278 (444)
Q Consensus 200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di-~~~l~~~~~~~~~~~~~~ 278 (444)
+...+++++|. .+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+ .+++.... ...
T Consensus 5 l~~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~-------~~~ 72 (138)
T 2p9m_A 5 LKNIKVKDVMT----KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIGYNLIRDKY-------TLE 72 (138)
T ss_dssp CTTCBGGGTSB----CSCCCEETTSBHHHHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHHHHHTTTCC-------CSS
T ss_pred cccCCHHHhhc----CCceEECCCCcHHHHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHHHHHHhhcc-------cCC
Confidence 34678999997 678999999999999999999999999999976 899999999999 88765431 145
Q ss_pred CcccccccCCCCCCCceEecCCCcHHHHHHHHHHcC-----CCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNN-----IGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 279 ~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~-----~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
.++.+ +|.+ ++.++.+++++.++++.|.+++ ++.+||+|+ +|+++|+||.+|+++.+.
T Consensus 73 ~~v~~----~m~~-~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~ 135 (138)
T 2p9m_A 73 TTIGD----VMTK-DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDK-NNKLVGIISDGDIIRTIS 135 (138)
T ss_dssp CBHHH----HSCS-SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred cCHHH----HhCC-CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECC-CCeEEEEEEHHHHHHHHH
Confidence 68888 7876 8899999999999999999999 999999997 799999999999998764
No 71
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.64 E-value=2.5e-15 Score=124.99 Aligned_cols=121 Identities=18% Similarity=0.215 Sum_probs=106.7
Q ss_pred cHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccc
Q 013361 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD 283 (444)
Q Consensus 204 ~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~ 283 (444)
+++++|. ++++++.+++++.+|++.|.+++++++||+| + ++++|++|..|+.+.+..... ....++.+
T Consensus 2 ~v~~~m~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~G~it~~dl~~~~~~~~~------~~~~~v~~ 69 (125)
T 1pbj_A 2 RVEDVMV----TDVDTIDITASLEDVLRNYVENAKGSSVVVK-E-GVRVGIVTTWDVLEAIAEGDD------LAEVKVWE 69 (125)
T ss_dssp CHHHHCB----CSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-T-TEEEEEEEHHHHHHHHHHTCC------TTTSBHHH
T ss_pred CHHHhcC----CCceEECCCCcHHHHHHHHHHcCCCEEEEEe-C-CeeEEEEeHHHHHHHHhcCCc------ccccCHHH
Confidence 5788887 6799999999999999999999999999999 5 899999999999988765421 13568888
Q ss_pred cccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013361 284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 284 l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
+|.+ ++.++.+++++.++++.|.+++++.+||+|+ |+++|++|.+|+++.+..
T Consensus 70 ----~m~~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 70 ----VMER-DLVTISPRATIKEAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAKMA 122 (125)
T ss_dssp ----HCBC-GGGEECTTSCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHC-
T ss_pred ----HcCC-CCeEECCCCCHHHHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHHHHHh
Confidence 6876 8999999999999999999999999999994 899999999999988753
No 72
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.64 E-value=7.8e-16 Score=144.09 Aligned_cols=226 Identities=14% Similarity=0.175 Sum_probs=139.9
Q ss_pred cCCccCCCCCCCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHhhhhHHhhhc
Q 013361 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (444)
Q Consensus 43 ~~~v~~~~~~~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~~~~~~~~~~ 122 (444)
..+|++++ ..+++++.+++++.+|+++|.+++++++||+|++ ++++|+||..|+++++...........
T Consensus 6 ~~~v~~im---~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~--------~~l~Giit~~di~~~~~~~~~~~~~~~ 74 (245)
T 3l2b_A 6 KLKVEDLE---MDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN--------NHLLGMLSTSNITATYMDIWDSNILAK 74 (245)
T ss_dssp CCBGGGSC---CBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT--------CBEEEEEEHHHHHHHHHCCCCTTHHHH
T ss_pred cCcHHHhc---CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CEEEEEEEHHHHHHHHHHhhhhhhhhh
Confidence 45677776 4578899999999999999999999999999986 499999999999998865332110000
Q ss_pred ccccccccccccccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhhhccCCCCC
Q 013361 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (444)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 202 (444)
....+..+.....|....|.-......|+ .. ...
T Consensus 75 --------------------------~~~~~~~v~~~l~~~~l~~~~~~~~~~g~--~~------------------i~a 108 (245)
T 3l2b_A 75 --------------------------SATSLDNILDTLSAEAQNINEERKVFPGK--VV------------------VAA 108 (245)
T ss_dssp --------------------------TTCCHHHHHHHTTCEEEECCTTCCCCCSC--EE------------------ECC
T ss_pred --------------------------ccCCHHHHHHHhCCEEEeccCCcceeeee--EE------------------EEe
Confidence 00001111111111111111000000000 00 000
Q ss_pred CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC-----------CCcEEEEEeHHHHHHHhhcCCCCC
Q 013361 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-----------TPDIKNYITQSAVVQGLEGCKGRD 271 (444)
Q Consensus 203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~-----------~~~l~Givt~~di~~~l~~~~~~~ 271 (444)
.....+........++.+ .+ -.++...+.+.++..+++.+.. ...+..+.|..|........
T Consensus 109 ~~~~~~~~~~~~~~ivIv-gd--r~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~~~~~~~i~t~~d~~~~~~~~---- 181 (245)
T 3l2b_A 109 MQAESLKEFISEGDIAIA-GD--RAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTASRLI---- 181 (245)
T ss_dssp SCGGGGGGTCCTTCEEEE-CS--CHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHHHHTCEEEECSSCHHHHHHHG----
T ss_pred CChHHHHhcCCCCCEEEE-CC--CHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHcCCeEEEeCCChHHHHHHH----
Confidence 111122221222344444 22 3778888889999999888642 12345666666654432221
Q ss_pred cccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHh
Q 013361 272 WFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 341 (444)
Q Consensus 272 ~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l 341 (444)
....++++ +|++.++.++.+++++.+++++|.+++++++||+|+ +|+++|+||.+|+++..
T Consensus 182 ----~~~~~v~~----im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dll~~~ 242 (245)
T 3l2b_A 182 ----VQSLPVDY----VMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE-NNKVVGSIARFHLISTH 242 (245)
T ss_dssp ----GGGSBHHH----HSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECT-TCBEEEEEECC------
T ss_pred ----hcCCceee----EecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcC-CCeEEEEEEHHHhhchh
Confidence 13467889 798238999999999999999999999999999998 79999999999998763
No 73
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.63 E-value=8.7e-16 Score=132.17 Aligned_cols=133 Identities=16% Similarity=0.250 Sum_probs=108.2
Q ss_pred CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCC-------ccc
Q 013361 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD-------WFD 274 (444)
Q Consensus 202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~-------~~~ 274 (444)
..+++++|... .+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++++....... .+.
T Consensus 4 ~~~v~~im~~~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~ 80 (152)
T 4gqw_A 4 VYTVGEFMTKK--EDLHVVKPTTTVDEALELLVENRITGFPVIDED-WKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLS 80 (152)
T ss_dssp CSBGGGTSEES--TTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHTTCC----CCHHHHHHHTC--
T ss_pred eEEhhhccCCC--CCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC-CeEEEEEEHHHHHHhhcccCcccchHHHHHHHH
Confidence 46789999832 369999999999999999999999999999987 89999999999987543221110 011
Q ss_pred ccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013361 275 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 275 ~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
.....++.+ +|.+ +++++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+..
T Consensus 81 ~~~~~~v~~----~m~~-~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dil~~~~~ 143 (152)
T 4gqw_A 81 KTNGKLVGD----LMTP-APLVVEEKTNLEDAAKILLETKYRRLPVVDS-DGKLVGIITRGNVVRAALQ 143 (152)
T ss_dssp ---CCBHHH----HSEE-SCCCEESSSBHHHHHHHHHHSSCCEEEEECT-TSBEEEEEEHHHHHHHHHC
T ss_pred HhccccHHH----hcCC-CceEECCCCcHHHHHHHHHHCCCCEEEEECC-CCcEEEEEEHHHHHHHHHh
Confidence 123568888 6876 7889999999999999999999999999997 8999999999999998764
No 74
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.63 E-value=3e-15 Score=130.51 Aligned_cols=125 Identities=12% Similarity=0.332 Sum_probs=108.0
Q ss_pred CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCc
Q 013361 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP 280 (444)
Q Consensus 201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~ 280 (444)
...+|+++|. ++ +++.+++++.+|++.|.+++++++||+|++ ++++|+||..|+++.+..... ....+
T Consensus 15 ~~~~v~~im~----~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~------~~~~~ 82 (159)
T 3fv6_A 15 KKLQVKDFQS----IP-VVIHENVSVYDAICTMFLEDVGTLFVVDRD-AVLVGVLSRKDLLRASIGQQE------LTSVP 82 (159)
T ss_dssp TTCBGGGSCB----CC-CEEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHTSCSC------TTTCB
T ss_pred hhCCHHHHcC----CC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHhhccCc------ccCcC
Confidence 3567999997 44 599999999999999999999999999976 899999999999997754311 14568
Q ss_pred ccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCC---eEEEEEeHHHHHHHhc
Q 013361 281 ISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQK---KIVGNVSIRDIRHLLL 342 (444)
Q Consensus 281 v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~---~lvGiIt~~Dll~~l~ 342 (444)
+.+ +|.+ .+++++.+++++.++++.|.+++++.+||+|+ +| +++|+||.+||++++.
T Consensus 83 v~~----~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~~~vGiit~~dil~~l~ 143 (159)
T 3fv6_A 83 VHI----IMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKD-TDKGFEVIGRVTKTNMTKILV 143 (159)
T ss_dssp GGG----TSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEE-CSSSEEEEEEEEHHHHHHHHH
T ss_pred HHH----HHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCcceeEEEEEEHHHHHHHHH
Confidence 888 6763 26789999999999999999999999999997 67 9999999999998875
No 75
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.63 E-value=1.4e-15 Score=139.43 Aligned_cols=122 Identities=16% Similarity=0.234 Sum_probs=107.4
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013361 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR 356 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~ 356 (444)
...++.+ +|.. +++++.+++++.+|++.|.+++++++||+|+ +++++|+||.+|+++.+. ..++.
T Consensus 11 ~~~~~~~----~~~~-~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~l~Givt~~dl~~~~~---------~~~v~ 75 (213)
T 1vr9_A 11 HHMKVKK----WVTQ-DFPMVEESATVRECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLLDLDL---------DSSVF 75 (213)
T ss_dssp --CBGGG----GCBS-CSCEEETTCBHHHHHHHHHHTTSSEEEEECT-TSBEEEEEEGGGGTTSCT---------TSBSG
T ss_pred cccCHHH----hhcC-CCeEECCCCcHHHHHHHHHHCCCCEEEEEcC-CCEEEEEEEHHHHHhhcC---------CCcHH
Confidence 3456667 6776 8999999999999999999999999999997 799999999999976532 45799
Q ss_pred HHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCC
Q 013361 357 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP 426 (444)
Q Consensus 357 ~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~ 426 (444)
++|.+ +++++++++++.+++++|.+++++++||+|++| +++|+||.+||++.+....
T Consensus 76 ~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~lvGiit~~Dil~~~~~~~ 132 (213)
T 1vr9_A 76 NKVSL------------PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEM-RLKGAVSLHDFLEALIEAL 132 (213)
T ss_dssp GGCBC------------TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTC-BEEEEEEHHHHHHHHHHSC
T ss_pred HHccC------------CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCC-EEEEEEEHHHHHHHHHHHh
Confidence 99984 889999999999999999999999999999887 9999999999999887543
No 76
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.63 E-value=7.4e-16 Score=137.46 Aligned_cols=128 Identities=19% Similarity=0.291 Sum_probs=108.3
Q ss_pred ccCcccccccCCCCCCC----ceEe--cCCCcHHHHHHHHHHcCCCeEeEE--eCCCCeEEEEEeHHHHHHHhcCCcc--
Q 013361 277 ASQPISDLGLPFMSSDE----VITI--QSNELILEAFKRMKDNNIGGIPVV--EGQQKKIVGNVSIRDIRHLLLKPEL-- 346 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~----~~~v--~~~~sl~ea~~~m~~~~~~~lpVv--d~~~~~lvGiIt~~Dll~~l~~~~~-- 346 (444)
...++++ +|++ . ++++ .+++++.+|++.|.+++++++||+ |+ +|+++|+||.+|+++.+.....
T Consensus 9 ~~~~v~d----im~~-~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~-~~~lvGiit~~dl~~~~~~~~~~~ 82 (185)
T 2j9l_A 9 HKTLAMD----VMKP-RRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE-SQRLVGFVLRRDLIISIENARKKQ 82 (185)
T ss_dssp CCCBHHH----HSBS-CTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT-TCBEEEEEEHHHHHHHHHHHHTSC
T ss_pred ccCcHHH----Hhcc-cccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECC-CCeEEEEEEHHHHHHHHHhhcccC
Confidence 4568888 7876 4 7888 999999999999999999999999 56 8999999999999987642100
Q ss_pred -------------------ccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCC
Q 013361 347 -------------------FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA 407 (444)
Q Consensus 347 -------------------~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~ 407 (444)
.......++.++|.. +++++++++++.++++.|.+++++++||+| +|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g- 148 (185)
T 2j9l_A 83 DGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDL------------SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NG- 148 (185)
T ss_dssp SCCCTTCEEECSSSCCCCCTTCCCCEECGGGEES------------SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TT-
T ss_pred CCccccceeecccCCcccccccccCccHHHhhCc------------CCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CC-
Confidence 001234578899874 889999999999999999999999999999 56
Q ss_pred eEEEEEeHHHHHHHhHc
Q 013361 408 EVVGVITLRDVISCFIF 424 (444)
Q Consensus 408 ~lvGvIT~~DIl~~l~~ 424 (444)
+++|+||++||++++..
T Consensus 149 ~~vGiit~~dll~~l~~ 165 (185)
T 2j9l_A 149 RLLGIITKKDVLKHIAQ 165 (185)
T ss_dssp EEEEEEEHHHHHHHHHH
T ss_pred EEEEEEEHHHHHHHHHH
Confidence 99999999999999974
No 77
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.63 E-value=1.5e-15 Score=130.82 Aligned_cols=121 Identities=19% Similarity=0.305 Sum_probs=106.1
Q ss_pred CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013361 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282 (444)
Q Consensus 203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~ 282 (444)
.+++++|... .+++++.+++++.+|++.|.+++++++||+|++ ++++|+||..|+++.+..... ....++.
T Consensus 28 ~~v~dim~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~------~~~~~v~ 98 (149)
T 3k2v_A 28 LRVNDIMHTG--DEIPHVGLQATLRDALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRVFDTGVD------MRDASIA 98 (149)
T ss_dssp SBGGGTSBCG--GGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHHHCSSSC------CTTCBHH
T ss_pred cCHHHHhcCC--CCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHHHhcCCC------cccCcHH
Confidence 5799999821 279999999999999999999999999999977 899999999999998865421 2456888
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013361 283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
+ +|.+ ++.++.+++++.++++.|.+++++.+||+|+ + +++|+||.+|+++
T Consensus 99 ~----~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~-~~~Giit~~dil~ 148 (149)
T 3k2v_A 99 D----VMTR-GGIRIRPGTLAVDALNLMQSRHITCVLVADG-D-HLLGVVHMHDLLR 148 (149)
T ss_dssp H----HSEE-SCCEECTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHTC
T ss_pred H----HcCC-CCeEECCCCCHHHHHHHHHHcCCCEEEEecC-C-EEEEEEEHHHhhc
Confidence 8 7876 7899999999999999999999999999996 4 9999999999864
No 78
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.62 E-value=1.5e-15 Score=127.97 Aligned_cols=125 Identities=20% Similarity=0.354 Sum_probs=106.8
Q ss_pred CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHH-HHhhcCCCCCccccccc
Q 013361 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV-QGLEGCKGRDWFDIIAS 278 (444)
Q Consensus 200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~-~~l~~~~~~~~~~~~~~ 278 (444)
+...+++++|. ++++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|++ +++..+.. ...
T Consensus 5 ~~~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~------~~~ 73 (133)
T 1y5h_A 5 FTMTTARDIMN----AGVTCVGEHETLTAAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLD------PNT 73 (133)
T ss_dssp ---CCHHHHSE----ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCC------TTT
T ss_pred hhhcCHHHHhc----CCceEeCCCCCHHHHHHHHHHhCCCeEEEECCC-CeEEEEEeHHHHHHHHHhcCCC------ccc
Confidence 34568999998 568999999999999999999999999999876 8999999999998 45554321 134
Q ss_pred CcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 279 ~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
.++.+ +|.+ ++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|+++.+.
T Consensus 74 ~~v~~----~m~~-~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~dil~~l~ 130 (133)
T 1y5h_A 74 ATAGE----LARD-SIYYVDANASIQEMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHLP 130 (133)
T ss_dssp SBHHH----HHTT-CCCCEETTCCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTCC
T ss_pred cCHHH----HhcC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence 68888 7876 8999999999999999999999999999994 89999999999998764
No 79
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.62 E-value=3.3e-15 Score=130.41 Aligned_cols=129 Identities=17% Similarity=0.298 Sum_probs=108.0
Q ss_pred CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCC--cccccccC
Q 013361 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD--WFDIIASQ 279 (444)
Q Consensus 202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~--~~~~~~~~ 279 (444)
..+|+++|. .+++++.+++++.+|+++|.+++++++||+|++ ++++|+||..|+++++....... ........
T Consensus 4 ~~~v~dim~----~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~ 78 (160)
T 2o16_A 4 MIKVEDMMT----RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFET 78 (160)
T ss_dssp CCBGGGTSE----ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCC
T ss_pred cCcHHHHhc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHhhcccccccchhccc
Confidence 457899998 568999999999999999999999999999976 89999999999998775421100 00112456
Q ss_pred cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
++.+ +|.+ ++.++.+++++.++++.|.+++++.+||+|+ |+++|+||.+||++++.
T Consensus 79 ~v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~lvGiit~~dil~~~~ 134 (160)
T 2o16_A 79 PLFE----VMHT-DVTSVAPQAGLKESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVTIAI 134 (160)
T ss_dssp BHHH----HSCS-CEEEBCTTSBHHHHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHHHHH
T ss_pred CHHH----HhcC-CCeEECCCCCHHHHHHHHHHhCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence 8888 7886 8999999999999999999999999999994 89999999999998865
No 80
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.62 E-value=2.6e-15 Score=143.42 Aligned_cols=133 Identities=19% Similarity=0.289 Sum_probs=106.9
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHc-----CCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccc
Q 013361 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN-----NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~-----~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~ 351 (444)
...++++ +|++ +++++.++.++.++++.|.++ +++++||+|+ +++++|+||.+|++... .
T Consensus 133 ~~~~v~~----iM~~-~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~-~~~lvGivt~~dll~~~---------~ 197 (278)
T 2yvy_A 133 EEDEAGG----LMTP-EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRDLIVAD---------P 197 (278)
T ss_dssp CTTBGGG----TCBS-CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT-TCBEEEEEEHHHHHHSC---------T
T ss_pred CcchHHh----hcCC-CceEECCCCcHHHHHHHHHHccCCccceeEEEEECC-CCCEEEEEEHHHHhcCC---------C
Confidence 4567888 7987 899999999999999999987 7899999998 79999999999998641 2
Q ss_pred cCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccch
Q 013361 352 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD 431 (444)
Q Consensus 352 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~ 431 (444)
..++.++|.. +++++++++++.++++.|.+++.+.+||||++| +++|+||..||++.+..+....+.
T Consensus 198 ~~~v~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~lvGivT~~Dil~~i~~e~~ed~~ 264 (278)
T 2yvy_A 198 RTRVAEIMNP------------KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEG-RLVGIVTVDDVLDVLEAEATEDIH 264 (278)
T ss_dssp TCBSTTTSBS------------SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHC---------
T ss_pred CCcHHHHhCC------------CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCC-eEEEEEEHHHHHHHHHHHhHHHHH
Confidence 4578999974 889999999999999999999999999999887 999999999999999988777777
Q ss_pred hhhhhh
Q 013361 432 NYFGFS 437 (444)
Q Consensus 432 ~~~~~~ 437 (444)
.+.+..
T Consensus 265 ~~~g~~ 270 (278)
T 2yvy_A 265 KLGAVD 270 (278)
T ss_dssp ------
T ss_pred HhcCCC
Confidence 766553
No 81
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.61 E-value=1.2e-14 Score=122.88 Aligned_cols=126 Identities=13% Similarity=0.270 Sum_probs=106.6
Q ss_pred CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013361 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282 (444)
Q Consensus 203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~ 282 (444)
.+++++|... ..+++++.+++++.+|++.|.+++++++||+| + ++++|++|..|+++.+.... . .....++.
T Consensus 6 ~~v~~im~~~-~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~-~----~~~~~~v~ 77 (135)
T 2rc3_A 6 KTVKHLLQEK-GHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-D-EKLVGILTERDFSRKSYLLD-K----PVKDTQVK 77 (135)
T ss_dssp CBHHHHHHHH-CCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHGGGSS-S----CGGGSBGG
T ss_pred eeHHHHHhcC-CCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-CEEEEEEehHHHHHHHHHcC-C----CcccCCHH
Confidence 3689999721 13588999999999999999999999999998 5 89999999999986443221 1 12457889
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013361 283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
+ +|.+ ++.++.+++++.++++.|.+++++.+||+| +|+++|+||.+|+++.+..
T Consensus 78 ~----~m~~-~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dll~~~~~ 131 (135)
T 2rc3_A 78 E----IMTR-QVAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDAIS 131 (135)
T ss_dssp G----TSBC-SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred H----hccC-CCeEECCCCcHHHHHHHHHHhCCCEEEEEe--CCEEEEEEEHHHHHHHHHh
Confidence 9 7876 899999999999999999999999999999 5899999999999988753
No 82
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.61 E-value=3.3e-15 Score=130.12 Aligned_cols=131 Identities=16% Similarity=0.288 Sum_probs=110.6
Q ss_pred CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013361 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (444)
Q Consensus 200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~ 279 (444)
+...+++++|... .+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++.+...... ........
T Consensus 11 l~~~~v~~im~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~-~~~~~~~~ 86 (159)
T 1yav_A 11 LLEATVGQFMIEA--DKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERI-EFEKLDQI 86 (159)
T ss_dssp CTTCBHHHHSEEG--GGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSB-CGGGTTTS
T ss_pred HhHhhHHHHhCCc--cceEEECCCCcHHHHHHHHHhCCCcEEEEECCC-CCEEEEeEHHHHHHHhhhhccc-chhhhccC
Confidence 4567899999831 268999999999999999999999999999986 8999999999999887653211 11223567
Q ss_pred cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
++.+ +|.+ ++.++.+++++.++++.|.++++ +||+|+ +|+++|+||.+|+++.+.
T Consensus 87 ~v~~----~m~~-~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~-~g~~vGiit~~dil~~~~ 141 (159)
T 1yav_A 87 TVEE----VMLT-DIPRLHINDPIMKGFGMVINNGF--VCVEND-EQVFEGIFTRRVVLKELN 141 (159)
T ss_dssp BHHH----HSBC-SCCEEETTSBHHHHHHHTTTCSE--EEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred CHHH----hcCC-CCceEcCCCCHHHHHHHHHhCCE--EEEEeC-CCeEEEEEEHHHHHHHHH
Confidence 8888 7876 89999999999999999998877 999998 799999999999998865
No 83
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.61 E-value=1.5e-15 Score=145.64 Aligned_cols=132 Identities=19% Similarity=0.316 Sum_probs=111.0
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHc-----CCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccc
Q 013361 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN-----NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~-----~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~ 351 (444)
...++++ +|++ +++++.+++++.+|++.|.++ +++++||+|+ +++++|+||.+|++... .
T Consensus 135 ~~~~v~~----iM~~-~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~-~~~lvGivt~~dll~~~---------~ 199 (286)
T 2oux_A 135 EDETAGA----IMTT-EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ-ENHLVGVISLRDLIVND---------D 199 (286)
T ss_dssp CTTBHHH----HCBS-CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT-TCBEEEEEEHHHHTTSC---------T
T ss_pred ChHHHHH----hCCC-CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC-CCeEEEEEEHHHHHcCC---------C
Confidence 4568888 7886 899999999999999999998 7889999998 79999999999997541 2
Q ss_pred cCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccch
Q 013361 352 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD 431 (444)
Q Consensus 352 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~ 431 (444)
..++.++|.. +++++++++++.++++.|.+++++++||||++| +++|+||..||++.+..+....+.
T Consensus 200 ~~~v~~im~~------------~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g-~lvGiIT~~Dil~~i~~e~~ed~~ 266 (286)
T 2oux_A 200 DTLIADILNE------------RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDD-HLLGIVTVDDIIDVIDDEAASDYS 266 (286)
T ss_dssp TSBHHHHSBS------------CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHHHHHHC---
T ss_pred CCcHHHHcCC------------CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCC-eEEEEEEHHHHHHHHHHHhHHHHH
Confidence 5689999984 889999999999999999999999999999887 999999999999999865444455
Q ss_pred hhhhh
Q 013361 432 NYFGF 436 (444)
Q Consensus 432 ~~~~~ 436 (444)
.+.+.
T Consensus 267 ~~~g~ 271 (286)
T 2oux_A 267 GLAGV 271 (286)
T ss_dssp -----
T ss_pred HhcCC
Confidence 44443
No 84
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.61 E-value=5.6e-15 Score=128.13 Aligned_cols=131 Identities=14% Similarity=0.277 Sum_probs=109.3
Q ss_pred CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013361 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (444)
Q Consensus 200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~ 279 (444)
+...+++++|... .+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++.+...... ........
T Consensus 8 l~~~~v~~im~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~-~~~~~~~~ 83 (157)
T 2emq_A 8 FMQMTVKPFLIPA--DKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS-YKLHGLISMTMMMDAILGLERI-EFERLETM 83 (157)
T ss_dssp --CCBSTTTCEEG--GGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTT-CCEEEEEEHHHHHHHSBCSSSB-CGGGGGTC
T ss_pred HhhCcHHhhccCC--ccceEECCCCcHHHHHHHHHHCCceEEEEEcCC-CCEEEEeeHHHHHHHHhccccc-chHHhcCC
Confidence 3467789999731 268899999999999999999999999999976 8999999999999877643111 11223467
Q ss_pred cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
++.+ +|.+ ++.++.+++++.++++.|.++++ +||+|+ +|+++|+||.+|+++.+.
T Consensus 84 ~v~~----~m~~-~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~-~g~~~Giit~~dil~~~~ 138 (157)
T 2emq_A 84 KVEE----VMNR-NIPRLRLDDSLMKAVGLIVNHPF--VCVEND-DGYFAGIFTRREVLKQLN 138 (157)
T ss_dssp BGGG----TCBC-CCCEEETTSBHHHHHHHHHHSSE--EEEECS-SSSEEEEEEHHHHHHHHH
T ss_pred cHHH----HhCC-CCceecCCCcHHHHHHHHhhCCE--EEEEcC-CCeEEEEEEHHHHHHHHH
Confidence 8888 7876 89999999999999999999987 999997 799999999999998875
No 85
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.61 E-value=2.1e-15 Score=130.87 Aligned_cols=128 Identities=15% Similarity=0.192 Sum_probs=108.1
Q ss_pred CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcc
Q 013361 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (444)
Q Consensus 202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v 281 (444)
..+++++|... .+++++.+++++.+|++.|.+++++++||+|++ |+++|++|..|+++.+.... .....+...++
T Consensus 14 ~~~v~dim~p~--~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~dl~~~~~~~~--~~~~~~~~~~v 88 (156)
T 3ctu_A 14 LGQEETFLTPA--KNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE-KQFVGTIGLRDIMAYQMEHD--LSQEIMADTDI 88 (156)
T ss_dssp HTTGGGGEEEG--GGCCCEETTSBHHHHHHHHTTCSSSEEEEECC--CBEEEEEEHHHHHHHHHHHT--CCHHHHTTSBG
T ss_pred HHHHHHHcCcc--cCceEECCCCCHHHHHHHHHHCCCceEeEECCC-CEEEEEEcHHHHHHHHHhcc--ccccccccCcH
Confidence 45689999843 568999999999999999999999999999977 89999999999998876531 11112236789
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
.+ +|.+ ++.++.+++++.++++.|.+++ .+||+|+ +|+++|+||.+|+++.+.
T Consensus 89 ~~----~m~~-~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~-~g~~~Giit~~dil~~l~ 141 (156)
T 3ctu_A 89 VH----MTKT-DVAVVSPDFTITEVLHKLVDES--FLPVVDA-EGIFQGIITRKSILKAVN 141 (156)
T ss_dssp GG----GCBC-SCCCBCSSCCHHHHHHHTTTSS--EEEEECT-TSBEEEEEETTHHHHHHH
T ss_pred HH----hccC-CceeeCCCCcHHHHHHHHHHcC--eEEEEcC-CCeEEEEEEHHHHHHHHH
Confidence 99 7876 8899999999999999999886 6999997 899999999999999875
No 86
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.61 E-value=4.3e-15 Score=131.62 Aligned_cols=125 Identities=15% Similarity=0.104 Sum_probs=106.8
Q ss_pred CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013361 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (444)
Q Consensus 200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~ 279 (444)
+...+|+++|... .+++++.+++++.+|++.|.+++++++||+|.+.++++|+||.+|+++.+... ...
T Consensus 33 l~~~~v~diM~~~--~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~---------~~~ 101 (173)
T 3ocm_A 33 LAERSIRSIMTPR--TDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITE---------GRV 101 (173)
T ss_dssp HTTSCSTTTSEEG--GGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHH---------SSC
T ss_pred cCCCCHHHhCCcH--HHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcC---------Ccc
Confidence 5577899999732 45899999999999999999999999999987547999999999999887543 123
Q ss_pred cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013361 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
++. + .. +++++.+++++.++++.|.+++++.+||+|+ +|+++|+||..|++..+..
T Consensus 102 ~v~-~-----~~-~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde-~g~lvGiIT~~Dil~~l~~ 157 (173)
T 3ocm_A 102 RRN-R-----LR-DPIIVHESIGILRLMDTLKRSRGQLVLVADE-FGAIEGLVTPIDVFEAIAG 157 (173)
T ss_dssp CGG-G-----SB-CCCEECGGGCHHHHHHHHHHSTTCCEEEECT-TCCEEEEECHHHHHHHHHC
T ss_pred hhH-h-----cC-CCeEECCCCcHHHHHHHHHHcCCeEEEEEeC-CCCEEEEEeHHHHHHHHhC
Confidence 444 2 33 6889999999999999999999999999997 8999999999999998763
No 87
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.60 E-value=1.6e-15 Score=131.86 Aligned_cols=121 Identities=11% Similarity=0.173 Sum_probs=105.7
Q ss_pred CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013361 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (444)
Q Consensus 200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~ 279 (444)
+...+++++|... .+++++.+++++.+|++.|.+++++++||+|++.++++|++|..|+++.+... ...
T Consensus 35 l~~~~v~diM~~~--~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~---------~~~ 103 (156)
T 3oi8_A 35 FSDLEVRDAMITR--SRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP---------EQF 103 (156)
T ss_dssp HTTCBGGGTCEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG---------GGC
T ss_pred cCCCCHhheeeeH--HHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC---------Ccc
Confidence 5578899999832 36899999999999999999999999999997634999999999998876432 346
Q ss_pred cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHH
Q 013361 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338 (444)
Q Consensus 280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll 338 (444)
++.+ +|+ ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|++
T Consensus 104 ~v~~----im~--~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~-~g~~~Givt~~Dil 155 (156)
T 3oi8_A 104 HLKS----ILR--PAVFVPEGKSLTALLKEFREQRNHMAIVIDE-YGGTSGLVTFEDII 155 (156)
T ss_dssp CHHH----HCB--CCCEEETTSBHHHHHHHHHHTTCCEEEEECT-TSSEEEEEEHHHHC
T ss_pred cHHH----HcC--CCEEECCCCCHHHHHHHHHhcCCeEEEEECC-CCCEEEEEEHHHhc
Confidence 7888 675 4889999999999999999999999999998 89999999999985
No 88
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.60 E-value=7.2e-15 Score=131.33 Aligned_cols=124 Identities=14% Similarity=0.259 Sum_probs=108.6
Q ss_pred CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013361 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282 (444)
Q Consensus 203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~ 282 (444)
.+++++|. ++++++.+++++.+|+++|.+++++++||+|++ ++++|++|..|+++.+..... .....++.
T Consensus 9 ~~v~~im~----~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~~~~~-----~~~~~~v~ 78 (184)
T 1pvm_A 9 MRVEKIMN----SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNK-----KPDEVPIR 78 (184)
T ss_dssp CBGGGTSB----TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCC-----CGGGSBGG
T ss_pred cCHHHhcC----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhccc-----CcccCCHH
Confidence 56889997 679999999999999999999999999999976 899999999999987653210 11456888
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
+ +|.+ ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||..|+++++.
T Consensus 79 ~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Givt~~dll~~~~ 132 (184)
T 1pvm_A 79 L----VMRK-PIPKVKSDYDVKDVAAYLSENGLERCAVVDD-PGRVVGIVTLTDLSRYLS 132 (184)
T ss_dssp G----TSBS-SCCEEETTCBHHHHHHHHHHHTCSEEEEECT-TCCEEEEEEHHHHTTTSC
T ss_pred H----HhCC-CCcEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHH
Confidence 8 7886 8899999999999999999999999999997 799999999999987754
No 89
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.60 E-value=4e-15 Score=126.87 Aligned_cols=126 Identities=17% Similarity=0.264 Sum_probs=104.3
Q ss_pred CCcHHH---hhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccccccc
Q 013361 202 STTVRS---IIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS 278 (444)
Q Consensus 202 ~~~v~d---i~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~ 278 (444)
..++++ +|. .+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++.+..... ....
T Consensus 7 ~~~v~~~~~~~~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~-----~~~~ 76 (144)
T 2nyc_A 7 KIPIGDLNIITQ----DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIY-----NDLS 76 (144)
T ss_dssp GSBGGGSSCCBC----SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC---------CC
T ss_pred hcchhhcCCCCC----CCceEECCCCcHHHHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhccccc-----ccCC
Confidence 455777 444 678999999999999999999999999999976 899999999999988764310 0134
Q ss_pred CcccccccCCCCCC-----CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 279 QPISDLGLPFMSSD-----EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 279 ~~v~~l~l~im~~~-----~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
.++.+ +|... ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+.
T Consensus 77 ~~v~~----~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~ 140 (144)
T 2nyc_A 77 LSVGE----ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 140 (144)
T ss_dssp SBHHH----HHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred ccHHH----HHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEHHHHHHHHH
Confidence 57777 56531 5789999999999999999999999999997 799999999999998864
No 90
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.60 E-value=3.3e-15 Score=129.15 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=100.8
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCC----
Q 013361 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMS---- 290 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~---- 290 (444)
.+++++.+++++.+|++.|.+++++.+||+|++ |+++|++|..|+++.+...... ....++.+ +|.
T Consensus 29 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~-~~~vGivt~~dl~~~~~~~~~~-----~~~~~v~~----~m~~~~~ 98 (152)
T 2uv4_A 29 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYN-----NLDVSVTK----ALQHRSH 98 (152)
T ss_dssp SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-SBEEEEEEHHHHHHHHHCSSCC-----CTTSBGGG----GGGTCCH
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCceEeEECCC-CcEEEEEeHHHHHHHhcchhhh-----hhcchHHH----HHhhhhc
Confidence 458899999999999999999999999999976 8999999999999887654210 12457777 674
Q ss_pred --CCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 291 --SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 291 --~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
. ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+.
T Consensus 99 ~~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dil~~l~ 150 (152)
T 2uv4_A 99 YFE-GVLKCYLHETLETIINRLVEAEVHRLVVVDE-NDVVKGIVSLSDILQALV 150 (152)
T ss_dssp HHH-TCSEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHC
T ss_pred ccC-CCeEECCCCcHHHHHHHHHHcCCeEEEEECC-CCeEEEEEEHHHHHHHHH
Confidence 4 7899999999999999999999999999997 799999999999998864
No 91
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.60 E-value=3.1e-15 Score=132.69 Aligned_cols=131 Identities=15% Similarity=0.261 Sum_probs=106.9
Q ss_pred CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCC------------
Q 013361 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR------------ 270 (444)
Q Consensus 203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~------------ 270 (444)
.+++++|... .+++++.+++++.+|+++|.+++++++||+|++ ++++|+||..|+++++......
T Consensus 4 ~~v~dim~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~ 80 (180)
T 3sl7_A 4 YTVGDFMTPR--QNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN-WTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS 80 (180)
T ss_dssp CBHHHHSEEG--GGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHTCC-------------------
T ss_pred eeHHHhcCCC--CCceeeCCCCcHHHHHHHHHHcCCCeEEEECCC-CeEEEEEEHHHHHhhhhhccccCCcccccccccc
Confidence 4689999831 268999999999999999999999999999987 8999999999998643211000
Q ss_pred Cc---------ccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHh
Q 013361 271 DW---------FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 341 (444)
Q Consensus 271 ~~---------~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l 341 (444)
.+ +......++++ +|++ ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~----~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dil~~~ 154 (180)
T 3sl7_A 81 TWKTFNELQKLISKTYGKVVGD----LMTP-SPLVVRDSTNLEDAARLLLETKFRRLPVVDA-DGKLIGILTRGNVVRAA 154 (180)
T ss_dssp CCCSHHHHHHHHHTTTTCBHHH----HSEE-SCCCEETTSBHHHHHHHHTTSTTCEEEEECT-TCBEEEEEEHHHHHHHH
T ss_pred hhhhhHHHHHHHhccccccHHH----HhCC-CceEeCCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHH
Confidence 00 01123567888 7876 7899999999999999999999999999998 89999999999999887
Q ss_pred c
Q 013361 342 L 342 (444)
Q Consensus 342 ~ 342 (444)
.
T Consensus 155 ~ 155 (180)
T 3sl7_A 155 L 155 (180)
T ss_dssp H
T ss_pred H
Confidence 5
No 92
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=127.08 Aligned_cols=129 Identities=16% Similarity=0.236 Sum_probs=105.6
Q ss_pred CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecC-CCCcEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013361 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (444)
Q Consensus 201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~-~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~ 279 (444)
...+++++|. .+++++.+++++.+|++.|.+++++++||+|+ +.++++|++|..|+.+.+...... . ......
T Consensus 11 ~~~~v~dim~----~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~-~-~~~~~~ 84 (164)
T 2pfi_A 11 HHVRVEHFMN----HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPS-R-APGHQQ 84 (164)
T ss_dssp CSCBHHHHCB----CCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC---------CCCC
T ss_pred cCCCHHHHcC----CCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccc-c-CCcccc
Confidence 3568999998 67999999999999999999999999999996 238999999999999887543110 0 011234
Q ss_pred cccccccCCCCCCC------ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 280 PISDLGLPFMSSDE------VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 280 ~v~~l~l~im~~~~------~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
++.+ +|.. + +.++.+++++.++++.|.+++++++||+| +|+++|+||.+|+++.+.
T Consensus 85 ~v~~----~m~~-~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~l~Giit~~dil~~~~ 146 (164)
T 2pfi_A 85 CLQD----ILAR-GCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS--RGRAVGCVSWVEMKKAIS 146 (164)
T ss_dssp BHHH----HHHT-TCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred hhhh----hhcc-cccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence 5666 4543 3 78999999999999999999999999999 689999999999998865
No 93
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.59 E-value=1.5e-14 Score=131.69 Aligned_cols=121 Identities=12% Similarity=0.274 Sum_probs=108.8
Q ss_pred CCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhC---CCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccc
Q 013361 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY---RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI 275 (444)
Q Consensus 199 ~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~---~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~ 275 (444)
.|...+++++|. .+++++.++.|+.+|++.|.++ +++.+||+|++ ++++|+||.+|++.. .
T Consensus 50 ~~~~~~v~~iM~----~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~dll~~---~-------- 113 (205)
T 3kxr_A 50 QYSENEIGRYTD----HQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEA-DKYLGTVRRYDIFKH---E-------- 113 (205)
T ss_dssp HSCTTCGGGGCB----CCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTT-CBEEEEEEHHHHTTS---C--------
T ss_pred CCCcchHHhhcc----CceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCC-CeEEEEEEHHHHHhC---C--------
Confidence 366778999998 6799999999999999999987 89999999986 899999999998642 1
Q ss_pred cccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 276 ~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
...++++ +|++ +++++.+++++.++++.|.+++++.+||+|+ +|+++|+||..|++..+.
T Consensus 114 -~~~~v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~-~g~lvGiIT~~Dil~~i~ 173 (205)
T 3kxr_A 114 -PHEPLIS----LLSE-DSRALTANTTLLDAAEAIEHSREIELPVIDD-AGELIGRVTLRAATALVR 173 (205)
T ss_dssp -TTSBGGG----GCCS-SCCCEETTSCHHHHHHHHHTSSCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred -CcchHHH----HhcC-CCeEECCCCCHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHHH
Confidence 3568899 7886 8999999999999999999999999999998 899999999999999875
No 94
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.58 E-value=2e-14 Score=124.75 Aligned_cols=127 Identities=18% Similarity=0.325 Sum_probs=109.0
Q ss_pred CcHHHhhhhcC--CCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCc
Q 013361 203 TTVRSIIKSYR--WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP 280 (444)
Q Consensus 203 ~~v~di~~~~~--~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~ 280 (444)
.+++++|.... ..+++++.+++++.+|++.|.+++++++||.+ + ++++|++|..|+++.+...... ....+
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~-----~~~~~ 79 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-G-DDIAGIVTERDYARKVVLQERS-----SKATR 79 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-S-SSEEEEEEHHHHHHHSGGGTCC-----SSSCB
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-C-CEEEEEEEHHHHHHHHHhccCC-----ccccC
Confidence 46999998431 15579999999999999999999999999965 4 8999999999999887653211 14578
Q ss_pred ccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013361 281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 281 v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
+.+ +|.+ ++.++.+++++.++++.|.+++++.+||+| +|+++|+||.+|+++.+..
T Consensus 80 v~~----~m~~-~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dil~~l~~ 135 (157)
T 4fry_A 80 VEE----IMTA-KVRYVEPSQSTDECMALMTEHRMRHLPVLD--GGKLIGLISIGDLVKSVIA 135 (157)
T ss_dssp HHH----HSBS-SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHT
T ss_pred HHH----HcCC-CCcEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence 888 7876 899999999999999999999999999999 6899999999999999875
No 95
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.58 E-value=8.4e-15 Score=137.09 Aligned_cols=140 Identities=17% Similarity=0.267 Sum_probs=102.9
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCC-CCeEEEEEeHHHHHHHhcCC----ccc-cc-
Q 013361 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ-QKKIVGNVSIRDIRHLLLKP----ELF-SN- 349 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~-~~~lvGiIt~~Dll~~l~~~----~~~-~~- 349 (444)
...++++ +|++ +++++.+++++.+|.++|.+++++++||||+. +++++|+||.+||++++... ... ..
T Consensus 11 ~~~~v~d----iMt~-~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~ 85 (250)
T 2d4z_A 11 YNIQVGD----IMVR-DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAA 85 (250)
T ss_dssp SSCBTTS----SSBS-SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCC
T ss_pred CCCChHH----hcCC-CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhh
Confidence 4568899 8987 89999999999999999999999999999863 26899999999999876421 000 00
Q ss_pred -------------------------ccc----------------------------------------------------
Q 013361 350 -------------------------FRQ---------------------------------------------------- 352 (444)
Q Consensus 350 -------------------------~~~---------------------------------------------------- 352 (444)
+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (250)
T 2d4z_A 86 AEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVAS 165 (250)
T ss_dssp CCBCCC--------------------------------------------------------------------------
T ss_pred hcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCc
Confidence 000
Q ss_pred -----CcHHH-------HhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013361 353 -----LTVRD-------FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 353 -----~~v~~-------~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++..+ .+.... +.........++++.++++|.++..+|...+++++||++. | +++||||+.||++
T Consensus 166 ~~~~~i~~~~~~~~~~~~l~~~V-dl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~-G-rLVGIVTrkDl~k 242 (250)
T 2d4z_A 166 RFEEMLTLEEIYRWEQREKNVVV-NFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM-G-KLVGVVALAEIQA 242 (250)
T ss_dssp -CCSCCBHHHHHHHHHHHTTCBC-CTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHH
T ss_pred ccccccChhhhhhHHHHhcCcee-ccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEEC-C-EEEEEEEHHHHHH
Confidence 00000 000000 0000012246889999999999999999999999999985 4 9999999999999
Q ss_pred HhHc
Q 013361 421 CFIF 424 (444)
Q Consensus 421 ~l~~ 424 (444)
++.+
T Consensus 243 ai~~ 246 (250)
T 2d4z_A 243 AIEG 246 (250)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 9874
No 96
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.58 E-value=1.1e-14 Score=126.58 Aligned_cols=130 Identities=19% Similarity=0.226 Sum_probs=107.9
Q ss_pred CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCE-EEEecCCCCcEEEEEeHHHHHHHhhcC-----CCCCc-
Q 013361 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN-VPIIEPGTPDIKNYITQSAVVQGLEGC-----KGRDW- 272 (444)
Q Consensus 200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~-lpVvd~~~~~l~Givt~~di~~~l~~~-----~~~~~- 272 (444)
+...+++++|. .+++++.+++++.+|++.|.++++++ +||+|++ +++|++|..|+++.+... .....
T Consensus 13 ~~~~~v~~im~----~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~~~~~~~~~~~ 86 (157)
T 1o50_A 13 MKVKDVCKLIS----LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHFFGFIPKEELI 86 (157)
T ss_dssp CBHHHHTTSSC----CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHHHCCCC-----
T ss_pred hccccHhhccc----CCCceECCCCCHHHHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhHHhhhccHHHH
Confidence 44567899998 67999999999999999999999999 9999974 899999999999875410 00000
Q ss_pred ---ccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 273 ---FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 273 ---~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
.......++.+ +|.+ ++++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+.
T Consensus 87 ~~~~~~~~~~~v~~----im~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dll~~l~ 152 (157)
T 1o50_A 87 RSSMKRLIAKNASE----IMLD--PVYVHMDTPLEEALKLMIDNNIQEMPVVDE-KGEIVGDLNSLEILLALW 152 (157)
T ss_dssp --CCCCCSSCBHHH----HCBC--CCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred HHHHHHHcCCcHHH----HcCC--CeEECCCCCHHHHHHHHHHCCCcEEEEEcC-CCEEEEEEEHHHHHHHHH
Confidence 01124567888 6874 889999999999999999999999999997 799999999999998865
No 97
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.57 E-value=2.4e-14 Score=127.61 Aligned_cols=135 Identities=10% Similarity=0.203 Sum_probs=108.9
Q ss_pred CCCCcHHHhhhhcCCCCceEe--eCCCCHHHHHHHHHhCCCCEEEEe--cCCCCcEEEEEeHHHHHHHhhcCCCC--Cc-
Q 013361 200 FKSTTVRSIIKSYRWAPFLPV--ATDDSMLSVLLLLSKYRLRNVPII--EPGTPDIKNYITQSAVVQGLEGCKGR--DW- 272 (444)
Q Consensus 200 ~~~~~v~di~~~~~~~~~v~v--~~~~sl~~a~~~l~~~~i~~lpVv--d~~~~~l~Givt~~di~~~l~~~~~~--~~- 272 (444)
....+++++|......+++++ .+++++.+|+++|.+++++++||+ |++ ++++|+||..|+++.+...... ..
T Consensus 8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~-~~lvGiit~~dl~~~~~~~~~~~~~~~ 86 (185)
T 2j9l_A 8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRES-QRLVGFVLRRDLIISIENARKKQDGVV 86 (185)
T ss_dssp -CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTT-CBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred hccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCC-CeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence 346789999983321227778 999999999999999999999999 555 8999999999999877542100 00
Q ss_pred ---------------ccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHH
Q 013361 273 ---------------FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337 (444)
Q Consensus 273 ---------------~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dl 337 (444)
.......++.+ +|.+ ++.++.+++++.++++.|.+++++.+||+| +|+++|+||.+|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd--~g~~vGiit~~dl 159 (185)
T 2j9l_A 87 STSIIYFTEHSPPLPPYTPPTLKLRN----ILDL-SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDV 159 (185)
T ss_dssp TTCEEECSSSCCCCCTTCCCCEECGG----GEES-SCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHH
T ss_pred ccceeecccCCcccccccccCccHHH----hhCc-CCeEeCCCCCHHHHHHHHHhCCCcEEEEEE--CCEEEEEEEHHHH
Confidence 00123457888 6876 799999999999999999999999999999 6899999999999
Q ss_pred HHHhc
Q 013361 338 RHLLL 342 (444)
Q Consensus 338 l~~l~ 342 (444)
++.+.
T Consensus 160 l~~l~ 164 (185)
T 2j9l_A 160 LKHIA 164 (185)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 98
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.53 E-value=5.5e-14 Score=131.52 Aligned_cols=135 Identities=14% Similarity=0.163 Sum_probs=105.5
Q ss_pred CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC-CCcEEEEEeHHHHHHHhhcCC---CC--C--
Q 013361 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGCK---GR--D-- 271 (444)
Q Consensus 200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~-~~~l~Givt~~di~~~l~~~~---~~--~-- 271 (444)
....+|+|+|. .+++++.+++++.+|.++|.+++++++||+|++ +++++|+||..|+++++.... .. .
T Consensus 10 ~~~~~v~diMt----~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~ 85 (250)
T 2d4z_A 10 KYNIQVGDIMV----RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAA 85 (250)
T ss_dssp CSSCBTTSSSB----SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCC
T ss_pred cCCCChHHhcC----CCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhh
Confidence 34567999998 679999999999999999999999999999974 368999999999998764220 00 0
Q ss_pred -------------------------ccc----------------------------------------------------
Q 013361 272 -------------------------WFD---------------------------------------------------- 274 (444)
Q Consensus 272 -------------------------~~~---------------------------------------------------- 274 (444)
++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (250)
T 2d4z_A 86 AEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVAS 165 (250)
T ss_dssp CCBCCC--------------------------------------------------------------------------
T ss_pred hcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCc
Confidence 000
Q ss_pred ----------------ccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHH
Q 013361 275 ----------------IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338 (444)
Q Consensus 275 ----------------~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll 338 (444)
.....+|. |.-.+|++ .++++.+++++.++..+|...|++++||++ .|+++||||++||+
T Consensus 166 ~~~~~i~~~~~~~~~~~~l~~~Vd-l~~~~md~-sP~tv~~~tsL~~v~~LF~~lglr~l~V~~--~GrLVGIVTrkDl~ 241 (250)
T 2d4z_A 166 RFEEMLTLEEIYRWEQREKNVVVN-FETCRIDQ-SPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQ 241 (250)
T ss_dssp -CCSCCBHHHHHHHHHHHTTCBCC-TTSSCEEC-CSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHH
T ss_pred ccccccChhhhhhHHHHhcCceec-cccccccC-CCeEECCCCcHHHHHHHHHHhCCeEEEEEE--CCEEEEEEEHHHHH
Confidence 00111220 00014776 789999999999999999999999999998 69999999999999
Q ss_pred HHhc
Q 013361 339 HLLL 342 (444)
Q Consensus 339 ~~l~ 342 (444)
+++.
T Consensus 242 kai~ 245 (250)
T 2d4z_A 242 AAIE 245 (250)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 99
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.50 E-value=4.9e-14 Score=146.39 Aligned_cols=127 Identities=17% Similarity=0.188 Sum_probs=109.8
Q ss_pred cccCcccccccCCCCCCCceEecCC-CcHHHHHHHHHHcCCCeEeEEe-CCCCeEEEEEeHHHHHHHhcCCccccccccC
Q 013361 276 IASQPISDLGLPFMSSDEVITIQSN-ELILEAFKRMKDNNIGGIPVVE-GQQKKIVGNVSIRDIRHLLLKPELFSNFRQL 353 (444)
Q Consensus 276 ~~~~~v~~l~l~im~~~~~~~v~~~-~sl~ea~~~m~~~~~~~lpVvd-~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~ 353 (444)
+...+|++ +|++ +++++.++ +++.+++++|.+++++++||+| + +++++|+||.+||++.+.... .....
T Consensus 381 l~~~~V~d----iM~~-~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~-~g~lvGiVt~~Dll~~l~~~~---~~~~~ 451 (527)
T 3pc3_A 381 WWSLAIAE----LELP-APPVILKSDATVGEAIALMKKHRVDQLPVVDQD-DGSVLGVVGQETLITQIVSMN---RQQSD 451 (527)
T ss_dssp TTTSBGGG----GCCC-CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTT-TCCEEEEEEHHHHHHHHHHHC---CCTTS
T ss_pred ccCCcHHH----hCcC-CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECC-CCEEEEEEEHHHHHHHHHhcc---CcCCC
Confidence 34678899 7886 89999999 9999999999999999999999 6 789999999999998875321 12356
Q ss_pred cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCC----CCeEEEEEeHHHHHHHhHcCC
Q 013361 354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGE----EAEVVGVITLRDVISCFIFEP 426 (444)
Q Consensus 354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~----~~~lvGvIT~~DIl~~l~~e~ 426 (444)
+|.++|.. +++++++++++.+++++|.++++ +||||++ + +++||||++||++++....
T Consensus 452 ~V~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g-~lvGIVT~~Dll~~l~~~~ 513 (527)
T 3pc3_A 452 PAIKALNK------------RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKV-ELKALATKLDVTTFIAAGK 513 (527)
T ss_dssp BGGGGEET------------TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCE-EEEEEEEHHHHHHHHHTCC
T ss_pred cHHHHhcC------------CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCC-eEEEEEEHHHHHHHHHhcc
Confidence 89999984 89999999999999999977664 7999985 6 9999999999999998643
No 100
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.49 E-value=1.6e-13 Score=131.49 Aligned_cols=122 Identities=15% Similarity=0.322 Sum_probs=109.5
Q ss_pred CCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhC-----CCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc
Q 013361 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW 272 (444)
Q Consensus 198 ~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~-----~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~ 272 (444)
..+...+++++|. .+++++.+++++.+|++.|.++ +++++||+|.+ ++++|+||..|++...
T Consensus 132 l~~~~~~v~~iM~----~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~-~~lvGivt~~dll~~~-------- 198 (286)
T 2oux_A 132 LHYEDETAGAIMT----TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVND-------- 198 (286)
T ss_dssp TTSCTTBHHHHCB----SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTSC--------
T ss_pred hcCChHHHHHhCC----CCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC-CeEEEEEEHHHHHcCC--------
Confidence 3567889999998 6799999999999999999987 88999999987 8999999999997531
Q ss_pred ccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 273 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 273 ~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
...++.+ +|.+ +++++++++++.++++.|.+++++.+||+|+ +|+++|+||..|++..+.
T Consensus 199 ----~~~~v~~----im~~-~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIT~~Dil~~i~ 258 (286)
T 2oux_A 199 ----DDTLIAD----ILNE-RVISVHVGDDQEDVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVID 258 (286)
T ss_dssp ----TTSBHHH----HSBS-CCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred ----CCCcHHH----HcCC-CCeeecCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHH
Confidence 3568888 7876 8999999999999999999999999999998 899999999999998875
No 101
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.48 E-value=8.1e-14 Score=142.58 Aligned_cols=121 Identities=21% Similarity=0.325 Sum_probs=108.5
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHc-----CCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccc
Q 013361 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN-----NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~-----~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~ 351 (444)
...++++ +|++ +++++++++++.++++.|.++ +++++||+|+ +++++|++|.+|++.. . .
T Consensus 153 ~~~~v~~----iM~~-~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~-~~~lvGiVt~~Dll~~--~-------~ 217 (473)
T 2zy9_A 153 EEDEAGG----LMTP-EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRDLIVA--D-------P 217 (473)
T ss_dssp CTTBSTT----TCBS-CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECT-TSBEEEEEEHHHHHHS--C-------T
T ss_pred CCCCHHH----hCCC-CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECC-CCcEEEEEEHHHHhcC--C-------C
Confidence 4567888 7987 899999999999999999986 5799999998 7999999999999864 1 2
Q ss_pred cCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013361 352 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE 425 (444)
Q Consensus 352 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e 425 (444)
+.++.++|++ +++++++++++.++++.|.+++.+.+||||++| +++|+||..||++.+..+
T Consensus 218 ~~~v~dim~~------------~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g-~lvGiIT~~Dil~~i~~e 278 (473)
T 2zy9_A 218 RTRVAEIMNP------------KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEG-RLVGIVTVDDVLDVLEAE 278 (473)
T ss_dssp TSBGGGTSBS------------SCCCEESSSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHHHH
T ss_pred CCcHHHHhCC------------CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCC-EEEEEEehHhhHHHHHHH
Confidence 5689999974 889999999999999999999999999999988 999999999999988754
No 102
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.47 E-value=1.5e-13 Score=142.83 Aligned_cols=127 Identities=9% Similarity=0.186 Sum_probs=109.1
Q ss_pred CCCCCcHHHhhhhcCCCCceEeeCC-CCHHHHHHHHHhCCCCEEEEec-CCCCcEEEEEeHHHHHHHhhcCCCCCccccc
Q 013361 199 PFKSTTVRSIIKSYRWAPFLPVATD-DSMLSVLLLLSKYRLRNVPIIE-PGTPDIKNYITQSAVVQGLEGCKGRDWFDII 276 (444)
Q Consensus 199 ~~~~~~v~di~~~~~~~~~v~v~~~-~sl~~a~~~l~~~~i~~lpVvd-~~~~~l~Givt~~di~~~l~~~~~~~~~~~~ 276 (444)
++...+|+++|. .+++++.++ +++.+|+++|.+++++++||+| ++ ++++|+||..||++.+..... .
T Consensus 380 ~l~~~~V~diM~----~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~-g~lvGiVt~~Dll~~l~~~~~------~ 448 (527)
T 3pc3_A 380 WWWSLAIAELEL----PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDD-GSVLGVVGQETLITQIVSMNR------Q 448 (527)
T ss_dssp TTTTSBGGGGCC----CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTT-CCEEEEEEHHHHHHHHHHHCC------C
T ss_pred cccCCcHHHhCc----CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCC-CEEEEEEEHHHHHHHHHhccC------c
Confidence 355688999998 679999999 9999999999999999999999 55 899999999999988765321 1
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCC---CCeEEEEEeHHHHHHHhcC
Q 013361 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ---QKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~---~~~lvGiIt~~Dll~~l~~ 343 (444)
...+|.+ +|++ +++++.+++++.+++++|.++++ +||+|++ +++++|+||.+||++++.+
T Consensus 449 ~~~~V~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~ 511 (527)
T 3pc3_A 449 QSDPAIK----ALNK-RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAA 511 (527)
T ss_dssp TTSBGGG----GEET-TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHT
T ss_pred CCCcHHH----HhcC-CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHh
Confidence 4578999 7886 89999999999999999976664 7999962 2899999999999999875
No 103
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.46 E-value=4.1e-13 Score=128.03 Aligned_cols=121 Identities=15% Similarity=0.326 Sum_probs=107.2
Q ss_pred CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhC-----CCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccc
Q 013361 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD 274 (444)
Q Consensus 200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~-----~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~ 274 (444)
+...+++++|. .+++++.+++++.+|++.|.++ ++.++||+|.+ ++++|+||.+|++.. .
T Consensus 132 ~~~~~v~~iM~----~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~dll~~---~------- 196 (278)
T 2yvy_A 132 YEEDEAGGLMT----PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVA---D------- 196 (278)
T ss_dssp SCTTBGGGTCB----SCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT-CBEEEEEEHHHHHHS---C-------
T ss_pred CCcchHHhhcC----CCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC-CCEEEEEEHHHHhcC---C-------
Confidence 55678999998 5799999999999999999886 78999999987 899999999999753 1
Q ss_pred ccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013361 275 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 275 ~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
...++.+ +|.+ +++++++++++.++++.|.+++.+.+||+|+ +|+++|+||..|++..+..
T Consensus 197 --~~~~v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGivT~~Dil~~i~~ 257 (278)
T 2yvy_A 197 --PRTRVAE----IMNP-KVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLEA 257 (278)
T ss_dssp --TTCBSTT----TSBS-SCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHC--
T ss_pred --CCCcHHH----HhCC-CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeC-CCeEEEEEEHHHHHHHHHH
Confidence 3468889 7876 8999999999999999999999999999998 8999999999999988753
No 104
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.43 E-value=2.7e-14 Score=151.23 Aligned_cols=131 Identities=14% Similarity=0.087 Sum_probs=102.3
Q ss_pred cCcccccccCCCCC-CCceEecCCCcHHHHHHHHH-HcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccc------
Q 013361 278 SQPISDLGLPFMSS-DEVITIQSNELILEAFKRMK-DNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSN------ 349 (444)
Q Consensus 278 ~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~-~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~------ 349 (444)
+.++++ +|++ +++.++++++++.++.+.|. +++++++||+|+ +++++|+||.+|+++.+........
T Consensus 452 ~~~V~d----iM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~-~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~ 526 (632)
T 3org_A 452 EMTARE----IMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA-NGYLLGAISRKEIVDRLQHVLEDVPEPIAGH 526 (632)
T ss_dssp TSBHHH----HCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT-TCBBCCEESHHHHTTTTTTC-----------
T ss_pred cCcHHH----HhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEec-CCeEEEEEEHHHHHHHHHHHhhhcccccccc
Confidence 467888 7872 27899999999999999999 799999999998 8999999999999887653210000
Q ss_pred --------------ccc------------------------CcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHH
Q 013361 350 --------------FRQ------------------------LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSL 391 (444)
Q Consensus 350 --------------~~~------------------------~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m 391 (444)
... .++.++|+ ++++++++++++.++++.|
T Consensus 527 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt------------~~pitV~~~~~l~ea~~~M 594 (632)
T 3org_A 527 RTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCD------------VSPIVVTSYSLVRQLHFLF 594 (632)
T ss_dssp --------------------------------------------CCSCC------------CCCCEEETTCBHHHHHHHH
T ss_pred cceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhc------------CCCceecCCCcHHHHHHHH
Confidence 000 01333343 4789999999999999999
Q ss_pred HhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCC
Q 013361 392 ASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPP 427 (444)
Q Consensus 392 ~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~ 427 (444)
.+++++++||+ ++| +++||||++||++.+..+..
T Consensus 595 ~~~~i~~lpVv-e~G-~lvGIVT~~Dll~~~~~~~~ 628 (632)
T 3org_A 595 VMLMPSMIYVT-ERG-KLVGIVEREDVAYGYSNSLE 628 (632)
T ss_dssp HHTCCSEEEEE-ETT-EEEEEEEGGGTEECCCC---
T ss_pred HhcCCCEEEEE-ECC-EEEEEEehhhHHHHHhhhHH
Confidence 99999999999 566 99999999999988776433
No 105
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.36 E-value=4e-12 Score=130.83 Aligned_cols=116 Identities=23% Similarity=0.390 Sum_probs=102.8
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCC-CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCC
Q 013361 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ-QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTT 366 (444)
Q Consensus 288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~-~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~ 366 (444)
.|.. +++++.+++++.+++++|.+++++++||+|+. +++++|+||.+|++.. . ....++.++|++
T Consensus 118 ~m~~-d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~----~----~~~~~V~~vM~~----- 183 (511)
T 3usb_A 118 GVIS-DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI----Q----DYSIKISDVMTK----- 183 (511)
T ss_dssp CSSS-SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC----C----CSSSBHHHHCCC-----
T ss_pred cccc-CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh----c----cCCCcHHHhccc-----
Confidence 5665 78999999999999999999999999999851 4799999999999641 1 136689999983
Q ss_pred CCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 367 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 367 ~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
.+++++++++++.+++++|.+++++.+||||+++ +++|+||..||++.+..
T Consensus 184 ------~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g-~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 184 ------EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNG-VLQGLITIKDIEKVIEF 234 (511)
T ss_dssp ------CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHHC
T ss_pred ------CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCC-CEeeeccHHHHHHhhhc
Confidence 3789999999999999999999999999999998 99999999999999875
No 106
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.35 E-value=1.8e-11 Score=125.92 Aligned_cols=156 Identities=21% Similarity=0.300 Sum_probs=121.7
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecC--CCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCC
Q 013361 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEP--GTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD 292 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~--~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~ 292 (444)
.+++++.+++++.+++++|.+++++++||+|+ + ++++|+||.+|+.. .. . ...++.+ +|++.
T Consensus 121 ~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~-~~lvGiVt~rDl~~--~~----~-----~~~~V~~----vM~~~ 184 (511)
T 3usb_A 121 SDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDE-RKLVGIITNRDMRF--IQ----D-----YSIKISD----VMTKE 184 (511)
T ss_dssp SSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTT-CBEEEEEEHHHHTT--CC----C-----SSSBHHH----HCCCC
T ss_pred cCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCC-CEEEEEEEehHhhh--hc----c-----CCCcHHH----hcccC
Confidence 56889999999999999999999999999997 6 89999999999954 11 1 4578899 78754
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013361 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
+++++++++++.+++++|.+++++.+||+|+ +|+++|+||.+|+++.+..+.. +.+.+.. .
T Consensus 185 ~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe-~g~l~GiIT~~Dil~~~~~p~a--------~~D~~~r----------l 245 (511)
T 3usb_A 185 QLITAPVGTTLSEAEKILQKYKIEKLPLVDN-NGVLQGLITIKDIEKVIEFPNS--------AKDKQGR----------L 245 (511)
T ss_dssp CCCCEETTCCHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHCTTC--------CBCTTSC----------B
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEeC-CCCEeeeccHHHHHHhhhcccc--------hhhhccc----------e
Confidence 7899999999999999999999999999998 8999999999999998764221 1122211 0
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCC
Q 013361 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGE 405 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~ 405 (444)
.....+.......+.++.+.+.+++.++|-..+
T Consensus 246 ~V~aavg~~~d~~era~aLveaGvd~I~Id~a~ 278 (511)
T 3usb_A 246 LVGAAVGVTADAMTRIDALVKASVDAIVLDTAH 278 (511)
T ss_dssp CCEEEECSSTTHHHHHHHHHHTTCSEEEEECSC
T ss_pred eeeeeeeeccchHHHHHHHHhhccceEEecccc
Confidence 122344445555666777888888877665443
No 107
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.34 E-value=4.4e-12 Score=129.69 Aligned_cols=122 Identities=15% Similarity=0.322 Sum_probs=108.6
Q ss_pred CCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhC-----CCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc
Q 013361 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW 272 (444)
Q Consensus 198 ~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~-----~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~ 272 (444)
..+...+++++|. .+++++.+++++.+|++.|.++ +++++||+|++ ++++|++|.+|++.. .
T Consensus 150 l~~~~~~v~~iM~----~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~-~~lvGiVt~~Dll~~---~----- 216 (473)
T 2zy9_A 150 ARYEEDEAGGLMT----PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVA---D----- 216 (473)
T ss_dssp HTSCTTBSTTTCB----SCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT-SBEEEEEEHHHHHHS---C-----
T ss_pred hcCCCCCHHHhCC----CCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC-CcEEEEEEHHHHhcC---C-----
Confidence 3456778999998 6799999999999999999886 58999999987 899999999999762 1
Q ss_pred ccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 273 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 273 ~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
.+.++++ +|++ +++++++++++.++++.|.+++.+.+||+|+ +|+++|+||..|+++.+.
T Consensus 217 ----~~~~v~d----im~~-~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe-~g~lvGiIT~~Dil~~i~ 276 (473)
T 2zy9_A 217 ----PRTRVAE----IMNP-KVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLE 276 (473)
T ss_dssp ----TTSBGGG----TSBS-SCCCEESSSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred ----CCCcHHH----HhCC-CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcC-CCEEEEEEehHhhHHHHH
Confidence 3568999 7876 8999999999999999999999999999998 899999999999998865
No 108
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.33 E-value=1.3e-12 Score=138.43 Aligned_cols=132 Identities=16% Similarity=0.071 Sum_probs=105.4
Q ss_pred CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHH-hCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc-------
Q 013361 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLS-KYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW------- 272 (444)
Q Consensus 201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~-~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~------- 272 (444)
...+|+|+|... ++++++++++++.++.+.|. +++++++||+|++ ++++|+||.+|+.+.+........
T Consensus 451 ~~~~V~diM~p~--~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~-~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~ 527 (632)
T 3org_A 451 PEMTAREIMHPI--EGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDAN-GYLLGAISRKEIVDRLQHVLEDVPEPIAGHR 527 (632)
T ss_dssp TTSBHHHHCBCT--TTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTT-CBBCCEESHHHHTTTTTTC------------
T ss_pred ccCcHHHHhhcC--CCceEecCCCcHHHHHHHHHhcCCcceEEEEecC-CeEEEEEEHHHHHHHHHHHhhhccccccccc
Confidence 567899999832 56899999999999999999 7999999999986 899999999999987654310000
Q ss_pred -------------ccccc---------------------cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeE
Q 013361 273 -------------FDIIA---------------------SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGI 318 (444)
Q Consensus 273 -------------~~~~~---------------------~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~l 318 (444)
..... ..++++ +|++ +++++++++++.++.+.|.+++++++
T Consensus 528 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~----iMt~-~pitV~~~~~l~ea~~~M~~~~i~~l 602 (632)
T 3org_A 528 TLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVV----PCDV-SPIVVTSYSLVRQLHFLFVMLMPSMI 602 (632)
T ss_dssp -------------------------------------------CC----SCCC-CCCEEETTCBHHHHHHHHHHTCCSEE
T ss_pred ceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccch----hhcC-CCceecCCCcHHHHHHHHHhcCCCEE
Confidence 00000 013666 7986 88999999999999999999999999
Q ss_pred eEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 319 PVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 319 pVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
||++ +|+++|+||.+|+++.+.
T Consensus 603 pVve--~G~lvGIVT~~Dll~~~~ 624 (632)
T 3org_A 603 YVTE--RGKLVGIVEREDVAYGYS 624 (632)
T ss_dssp EEEE--TTEEEEEEEGGGTEECCC
T ss_pred EEEE--CCEEEEEEehhhHHHHHh
Confidence 9994 799999999999977654
No 109
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.32 E-value=8.1e-12 Score=128.65 Aligned_cols=115 Identities=21% Similarity=0.371 Sum_probs=103.3
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEe--CCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCC
Q 013361 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVE--GQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPT 365 (444)
Q Consensus 288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd--~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~ 365 (444)
+|.+ +++++.+++++.++++.|.+++++++||+| + +++++|+||.+|++.... ...++.++|+.
T Consensus 95 im~~-~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-~~~lvGivt~~Dl~~~~~--------~~~~v~~im~~---- 160 (491)
T 1zfj_A 95 GVII-DPFFLTPEHKVSEAEELMQRYRISGVPIVETLA-NRKLVGIITNRDMRFISD--------YNAPISEHMTS---- 160 (491)
T ss_dssp TTSS-SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTT-TCBEEEEEEHHHHHHCSC--------SSSBTTTSCCC----
T ss_pred cCcC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCC-CCEEEEEEEHHHHhhhcc--------CCCcHHHHcCC----
Confidence 6886 899999999999999999999999999999 6 899999999999986421 35578888872
Q ss_pred CCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 366 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 366 ~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
++++++++++++.++++.|.+++++++||||+++ +++|+||..||++.+..
T Consensus 161 -------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g-~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 161 -------EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSG-RLSGLITIKDIEKVIEF 211 (491)
T ss_dssp -------SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTS-BEEEEEEHHHHHHHHHC
T ss_pred -------CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEEHHHHHHHHhc
Confidence 2688999999999999999999999999999988 99999999999998874
No 110
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.31 E-value=5.2e-13 Score=136.96 Aligned_cols=116 Identities=22% Similarity=0.280 Sum_probs=89.5
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013361 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP 367 (444)
Q Consensus 288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~ 367 (444)
+|.. +++++.+++++.+++++|.+++++++||+|+ +++++|+||.+|++.. . ....++.++|++.
T Consensus 94 ~m~~-d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~-~~~lvGiVt~rDL~~~--~------~~~~~v~diM~p~----- 158 (496)
T 4fxs_A 94 GVVT-HPVTVRPEQTIADVMELTHYHGFAGFPVVTE-NNELVGIITGRDVRFV--T------DLTKSVAAVMTPK----- 158 (496)
T ss_dssp --CB-CCCCBCSSSBHHHHHHHHTSSCCCEEEEECS-SSBEEEEEEHHHHTTC--C------CTTSBGGGTSEEG-----
T ss_pred cccc-CceEECCCCCHHHHHHHHHHcCCcEEEEEcc-CCEEEEEEEHHHHhhc--c------cCCCcHHHHhcCC-----
Confidence 6775 8899999999999999999999999999998 7999999999999622 1 1356899999820
Q ss_pred CCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 368 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 368 ~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
++++++++++++.+++++|.+++++.+||||++| +++|+||+.||++....
T Consensus 159 -----~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G-~l~GiIT~~DIl~~~~~ 209 (496)
T 4fxs_A 159 -----ERLATVKEGATGAEVQEKMHKARVEKILVVNDEF-QLKGMITAKDFHKAESK 209 (496)
T ss_dssp -----GGCCEEECC----CGGGTCC---CCCEEEECTTS-BCCEEECCC-----CCC
T ss_pred -----CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-CEEEeehHhHHHHhhcc
Confidence 2589999999999999999999999999999998 99999999999997643
No 111
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.31 E-value=2e-13 Score=140.56 Aligned_cols=117 Identities=11% Similarity=0.177 Sum_probs=0.4
Q ss_pred CCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC---CeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCC
Q 013361 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ---KKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPT 365 (444)
Q Consensus 289 m~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~---~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~ 365 (444)
|.+ +++++.+++++.+++++|.+++++++||+|+ + ++++|+||.+|+++. . . ....++.++|++.
T Consensus 103 M~~-~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~-~~~~g~lvGiVt~~Dl~~~-~--~----~~~~~V~diM~~~--- 170 (503)
T 1me8_A 103 FVV-SDSNVKPDQTFADVLAISQRTTHNTVAVTDD-GTPHGVLLGLVTQRDYPID-L--T----QTETKVSDMMTPF--- 170 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc-CCeEECCCCcHHHHHHHHHHcCceEEEEEEC-CCcCCeEEEEEEHHHHHhh-h--c----cccCcHHHHhCCC---
Confidence 776 8999999999999999999999999999997 5 899999999999864 1 1 1356899999840
Q ss_pred CCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013361 366 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE 425 (444)
Q Consensus 366 ~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e 425 (444)
.+++++++++++.+++++|.+++++.+||||+++ +++|+||.+||++.+...
T Consensus 171 -------~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g-~lvGiIT~~Dil~~~~~~ 222 (503)
T 1me8_A 171 -------SKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQ-HLRYIVFRKDYDRSQVCH 222 (503)
T ss_dssp -----------------------------------------------------------C
T ss_pred -------CCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEecHHHHhhhcc
Confidence 1289999999999999999999999999999987 999999999999998753
No 112
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.24 E-value=7.8e-13 Score=136.22 Aligned_cols=152 Identities=13% Similarity=0.148 Sum_probs=19.1
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC--CCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCC
Q 013361 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD 292 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~--~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~ 292 (444)
.+++++.+++++.+|+++|.+++++++||+|++ .++++|+||.+|+... .. ....++++ +|++
T Consensus 105 ~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-~~---------~~~~~V~d----iM~~- 169 (503)
T 1me8_A 105 VSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-LT---------QTETKVSD----MMTP- 169 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-hc---------cccCcHHH----HhCC-
Confidence 568899999999999999999999999999864 2689999999999753 11 14568899 7886
Q ss_pred C--ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCC
Q 013361 293 E--VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSG 370 (444)
Q Consensus 293 ~--~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~ 370 (444)
+ ++++++++++.+++++|.+++++.+||+|+ +++++|+||.+||++.+..+.. ..+.+..
T Consensus 170 ~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~~~~~~~~--------~~d~~~~--------- 231 (503)
T 1me8_A 170 FSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD-DQHLRYIVFRKDYDRSQVCHNE--------LVDSQKR--------- 231 (503)
T ss_dssp -----------------------------------------------------CCC--------CBCTTSC---------
T ss_pred CCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEecHHHHhhhcccc--------hhccccc---------
Confidence 5 999999999999999999999999999998 8999999999999988653211 1111110
Q ss_pred CCCCCeEecCCCCHHHHHHHHHhcCCCEEEE
Q 013361 371 KVNPPITCKLESTLGSVIHSLASKSVHRIYV 401 (444)
Q Consensus 371 ~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V 401 (444)
......+.. ....+.++.|.+.+++.+.|
T Consensus 232 -l~v~a~v~~-~~~~e~~~~l~e~gv~~l~V 260 (503)
T 1me8_A 232 -YLVGAGINT-RDFRERVPALVEAGADVLCI 260 (503)
T ss_dssp -BCCEEEECS-SSHHHHHHHHHHHTCSEEEE
T ss_pred -cccccccCc-hhHHHHHHHHHhhhccceEE
Confidence 001133445 56667788888889886554
No 113
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.24 E-value=7.1e-13 Score=135.85 Aligned_cols=115 Identities=23% Similarity=0.351 Sum_probs=0.4
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013361 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP 367 (444)
Q Consensus 288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~ 367 (444)
+|.. +++++++++++.+++++|.+++++++||+| +++++|+||.+|++... ....++.++|++.
T Consensus 93 ~m~~-~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd--~g~lvGIVt~rDl~~~~--------~~~~~V~~vMtp~----- 156 (490)
T 4avf_A 93 AIVR-DPVTVTPSTKIIELLQMAREYGFSGFPVVE--QGELVGIVTGRDLRVKP--------NAGDTVAAIMTPK----- 156 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Cccc-CceEeCCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEhHHhhhcc--------ccCCcHHHHhccC-----
Confidence 6775 789999999999999999999999999999 68999999999996431 1356899999820
Q ss_pred CCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 368 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 368 ~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
.+++++++++++.+++++|.+++++.+||||+++ +++|+||+.||++....
T Consensus 157 -----~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g-~lvGiIT~~Dil~~~~~ 207 (490)
T 4avf_A 157 -----DKLVTAREGTPLEEMKAKLYENRIEKMLVVDENF-YLRGLVTFRDIEKAKTY 207 (490)
T ss_dssp --------------------------------------------------------C
T ss_pred -----CCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEehHHhhhhccC
Confidence 2689999999999999999999999999999988 99999999999998654
No 114
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.23 E-value=8.7e-13 Score=135.95 Aligned_cols=117 Identities=24% Similarity=0.411 Sum_probs=6.3
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013361 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP 367 (444)
Q Consensus 288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~ 367 (444)
+|.+ +++++.+++++.++++.|.+++++.+||+|+ +++++|+||.+|+++.. ....++.++|++.
T Consensus 100 iM~~-~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~lvGivt~~Dl~~~~--------~~~~~v~~im~~~----- 164 (494)
T 1vrd_A 100 GIIY-DPITVTPDMTVKEAIDLMAEYKIGGLPVVDE-EGRLVGLLTNRDVRFEK--------NLSKKIKDLMTPR----- 164 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcc-CCeEECCCCCHHHHHHHHHHcCceEEEEEcC-CCEEEEEEEHHHHHhhc--------CCCCcHHHHhCCC-----
Confidence 6876 8999999999999999999999999999997 78999999999998631 1256899999720
Q ss_pred CCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013361 368 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE 425 (444)
Q Consensus 368 ~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e 425 (444)
.+++++++++++.+++++|.+++++++||||+++ +++|+||..||++.+..+
T Consensus 165 -----~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g-~lvGiIt~~Dll~~~~~~ 216 (494)
T 1vrd_A 165 -----EKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDN-KLVGLITIKDIMSVIEHP 216 (494)
T ss_dssp --------------------------------------------------CHHHHTCT
T ss_pred -----CCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCC-eEEEEEEHHHHHhhhccc
Confidence 2789999999999999999999999999999987 999999999999998753
No 115
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.20 E-value=1.6e-12 Score=130.73 Aligned_cols=110 Identities=15% Similarity=0.265 Sum_probs=0.4
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCC
Q 013361 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSG 370 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~--~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~ 370 (444)
+++++.++.++.+++++|.+++++.+||+++. +++++||||.+|+... + ...+|.++|++
T Consensus 147 dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~--d-------~~~~V~evMT~--------- 208 (556)
T 4af0_A 147 DPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ--D-------AETPIKSVMTT--------- 208 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc--c-------cceEhhhhccc---------
Confidence 68999999999999999999999999999852 4789999999998652 1 25689999995
Q ss_pred CCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 371 KVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 371 ~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
++++++...++.+|.++|.++++..+||||+++ +++|+||+.|+++.-..
T Consensus 209 ---~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g-~LvGlIT~kDi~k~~~~ 258 (556)
T 4af0_A 209 ---EVVTGSSPITLEKANSLLRETKKGKLPIVDSNG-HLVSLVARSDLLKNQNY 258 (556)
T ss_dssp -----------------------------------------------------C
T ss_pred ---ceEEecCCCCHHHHHHHHHHccccceeEEccCC-cEEEEEEechhhhhhhC
Confidence 799999999999999999999999999999998 99999999999987654
No 116
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.18 E-value=1.4e-10 Score=119.42 Aligned_cols=118 Identities=19% Similarity=0.321 Sum_probs=103.3
Q ss_pred HHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEec--CCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013361 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIE--PGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282 (444)
Q Consensus 205 v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd--~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~ 282 (444)
+.++|. .+++++.+++++.+++++|.+++++++||+| ++ ++++|+||.+|++... . ...+++
T Consensus 92 ~~~im~----~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~-~~lvGivt~~Dl~~~~--~---------~~~~v~ 155 (491)
T 1zfj_A 92 SENGVI----IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLAN-RKLVGIITNRDMRFIS--D---------YNAPIS 155 (491)
T ss_dssp HTTTTS----SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTT-CBEEEEEEHHHHHHCS--C---------SSSBTT
T ss_pred HHhcCc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCC-CEEEEEEEHHHHhhhc--c---------CCCcHH
Confidence 456676 5788999999999999999999999999999 55 8999999999997531 1 356888
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013361 283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
+ +|++.+++++++++++.++++.|.+++++.+||+|+ +++++|++|..|+++.+..
T Consensus 156 ~----im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 156 E----HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEKVIEF 211 (491)
T ss_dssp T----SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHHHHHC
T ss_pred H----HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHHHHHHhc
Confidence 9 787436889999999999999999999999999998 8999999999999998764
No 117
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.16 E-value=1.9e-11 Score=125.30 Aligned_cols=112 Identities=15% Similarity=0.231 Sum_probs=87.5
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCC-CCC
Q 013361 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMS-SDE 293 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~-~~~ 293 (444)
.+++++.+++++.+++++|.+++++++||+|++ ++++|+||.+|+.. .. -...++.+ +|+ .++
T Consensus 97 ~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~-~~lvGiVt~rDL~~--~~---------~~~~~v~d----iM~p~~~ 160 (496)
T 4fxs_A 97 THPVTVRPEQTIADVMELTHYHGFAGFPVVTEN-NELVGIITGRDVRF--VT---------DLTKSVAA----VMTPKER 160 (496)
T ss_dssp BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSS-SBEEEEEEHHHHTT--CC---------CTTSBGGG----TSEEGGG
T ss_pred cCceEECCCCCHHHHHHHHHHcCCcEEEEEccC-CEEEEEEEHHHHhh--cc---------cCCCcHHH----HhcCCCC
Confidence 568999999999999999999999999999986 89999999999852 11 14568899 787 435
Q ss_pred ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013361 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 294 ~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
++++++++++.+++++|.+++++.+||+|+ +|+++|+||.+|+++....
T Consensus 161 ~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~G~l~GiIT~~DIl~~~~~ 209 (496)
T 4fxs_A 161 LATVKEGATGAEVQEKMHKARVEKILVVND-EFQLKGMITAKDFHKAESK 209 (496)
T ss_dssp CCEEECC----CGGGTCC---CCCEEEECT-TSBCCEEECCC-----CCC
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEeehHhHHHHhhcc
Confidence 899999999999999999999999999998 8999999999999987543
No 118
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.13 E-value=1.6e-11 Score=125.77 Aligned_cols=117 Identities=18% Similarity=0.284 Sum_probs=1.7
Q ss_pred HHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccccc
Q 013361 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDL 284 (444)
Q Consensus 205 v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l 284 (444)
++++|. .+++++.+++++.+|+++|.+++++++||+| + ++++|+||.+|+.... ....++.+
T Consensus 90 ~~~~m~----~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~-g~lvGIVt~rDl~~~~-----------~~~~~V~~- 151 (490)
T 4avf_A 90 HETAIV----RDPVTVTPSTKIIELLQMAREYGFSGFPVVE-Q-GELVGIVTGRDLRVKP-----------NAGDTVAA- 151 (490)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred cccCcc----cCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-C-CEEEEEEEhHHhhhcc-----------ccCCcHHH-
Confidence 345555 5688999999999999999999999999999 5 8999999999985211 14568999
Q ss_pred ccCCCC-CCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013361 285 GLPFMS-SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 285 ~l~im~-~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
+|+ .++++++++++++.+++++|.+++++.+||+|+ +++++|+||.+|+++....
T Consensus 152 ---vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~~~~~ 207 (490)
T 4avf_A 152 ---IMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDE-NFYLRGLVTFRDIEKAKTY 207 (490)
T ss_dssp -----------------------------------------------------------C
T ss_pred ---HhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHhhhhccC
Confidence 788 336899999999999999999999999999998 8999999999999988643
No 119
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=99.07 E-value=3.2e-12 Score=132.28 Aligned_cols=123 Identities=17% Similarity=0.224 Sum_probs=70.3
Q ss_pred cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013361 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD 357 (444)
Q Consensus 280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~--~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~ 357 (444)
.+.+ +|.. +++++.+++++.+++++|.+++++.+||+|+. +++++|+||.+|+++... .....++.+
T Consensus 109 ~~~~----im~~-~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~------~~~~~~v~~ 177 (514)
T 1jcn_A 109 NFEQ----GFIT-DPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE------KDHTTLLSE 177 (514)
T ss_dssp TCCT----TSCS-SCCCCCC-----------------CEESCC--------CCEECTTTTC-------------------
T ss_pred hhhh----cccc-CCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh------ccCCCCHHH
Confidence 4566 6776 78899999999999999999999999999862 389999999999976421 013568899
Q ss_pred HhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013361 358 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 358 ~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
+|++ ..+++++++++++.+++++|.+++++++||||+++ +++|+||++||++.+..
T Consensus 178 vm~~----------~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g-~lvGiIt~~Dll~~~~~ 233 (514)
T 1jcn_A 178 VMTP----------RIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCD-ELVAIIARTDLKKNRDY 233 (514)
T ss_dssp ---C----------CBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSS-CCC----CCCCSSCCCC
T ss_pred HhCC----------CCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCC-eEEEEEEHHHHHHHhhC
Confidence 9972 01689999999999999999999999999999987 99999999999987753
No 120
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.06 E-value=3.8e-11 Score=123.66 Aligned_cols=118 Identities=19% Similarity=0.346 Sum_probs=6.0
Q ss_pred HHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccccc
Q 013361 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDL 284 (444)
Q Consensus 205 v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l 284 (444)
+.++|. .+++++.+++++.+|+++|.+++++.+||+|++ ++++|+||..|+.+. .. ...++.+
T Consensus 97 ~~~iM~----~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-~~lvGivt~~Dl~~~--~~---------~~~~v~~- 159 (494)
T 1vrd_A 97 TENGII----YDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEE-GRLVGLLTNRDVRFE--KN---------LSKKIKD- 159 (494)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred HhhcCc----cCCeEECCCCCHHHHHHHHHHcCceEEEEEcCC-CEEEEEEEHHHHHhh--cC---------CCCcHHH-
Confidence 456676 578999999999999999999999999999976 799999999999752 11 3468888
Q ss_pred ccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013361 285 GLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 285 ~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
+|++ ++++++.+++++.+++++|.+++++.+||+|+ +++++|+||.+|+++.+..
T Consensus 160 ---im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~~~ 215 (494)
T 1vrd_A 160 ---LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSK-DNKLVGLITIKDIMSVIEH 215 (494)
T ss_dssp -----------------------------------------------------CHHHHTC
T ss_pred ---HhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHhhhcc
Confidence 7873 26899999999999999999999999999998 8999999999999998764
No 121
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=99.03 E-value=6.8e-10 Score=82.38 Aligned_cols=64 Identities=25% Similarity=0.380 Sum_probs=54.5
Q ss_pred ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcc
Q 013361 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNA 361 (444)
Q Consensus 294 ~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~ 361 (444)
++++.+++++.+|+++|.+++++++||+| +|+++|++|.+|+++.+.... ..+.+.+++++|++
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d--~~~lvGIvT~~Di~~~~~~~~--~~~~~~~V~~iMt~ 65 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVME--GDEILGVVTERDILDKVVAKG--KNPKEVKVEEIMTK 65 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHTTTTT--CCGGGCBGGGTCEE
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHHhcC--CCcccCCHHHhcCC
Confidence 68999999999999999999999999998 689999999999987654322 12456789999986
No 122
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=99.01 E-value=3.3e-11 Score=123.69 Aligned_cols=110 Identities=27% Similarity=0.439 Sum_probs=0.5
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013361 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP 367 (444)
Q Consensus 288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~ 367 (444)
.|.. +++++.+++++.++++.|.+++++++||+|+ ++++|+|+.+|++. . ...++.++|..
T Consensus 98 ~m~~-~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~--~~lvGivt~~Dl~~---~-------~~~~v~~im~~------ 158 (486)
T 2cu0_A 98 LIVE-DVITIAPDETVDFALFLMEKHGIDGLPVVED--EKVVGIITKKDIAA---R-------EGKLVKELMTK------ 158 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc-CceEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHhcc---C-------CCCCHHHHccC------
Confidence 5665 8899999999999999999999999999984 89999999999975 1 24579999984
Q ss_pred CCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhH
Q 013361 368 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI 423 (444)
Q Consensus 368 ~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~ 423 (444)
+++++++++++.++++.|.+++++.+||||+++ +++|+||.+||++.+.
T Consensus 159 ------~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g-~lvGiiT~~Dil~~~~ 207 (486)
T 2cu0_A 159 ------EVITVPESIEVEEALKIMIENRIDRLPVVDERG-KLVGLITMSDLVARKK 207 (486)
T ss_dssp -------------------------------------------------------C
T ss_pred ------CCeEECCcCcHHHHHHHHHHcCCCEEEEEecCC-eEEEEEEHHHHHHhhh
Confidence 789999999999999999999999999999987 9999999999999864
No 123
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.01 E-value=3.6e-11 Score=120.88 Aligned_cols=110 Identities=25% Similarity=0.311 Sum_probs=0.0
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC--CCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCC
Q 013361 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD 292 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~--~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~ 292 (444)
.+++++.|+.++.+|+++|.+++++.+||+|+. .++++||+|.+|+. +- . .+.+|++ +|++
T Consensus 146 ~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~r-f~--d---------~~~~V~e----vMT~- 208 (556)
T 4af0_A 146 TDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQ-FQ--D---------AETPIKS----VMTT- 208 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccc-cc--c---------cceEhhh----hccc-
Confidence 348899999999999999999999999999863 37999999999973 21 1 3578999 8997
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013361 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
+++++.++.++.+|.++|.++++..+||||+ +++++|+||.+|+.+.-.
T Consensus 209 ~lvt~~~~~~leeA~~iL~~~kieklpVVd~-~g~LvGlIT~kDi~k~~~ 257 (556)
T 4af0_A 209 EVVTGSSPITLEKANSLLRETKKGKLPIVDS-NGHLVSLVARSDLLKNQN 257 (556)
T ss_dssp --------------------------------------------------
T ss_pred ceEEecCCCCHHHHHHHHHHccccceeEEcc-CCcEEEEEEechhhhhhh
Confidence 8999999999999999999999999999999 899999999999987643
No 124
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=98.94 E-value=1.3e-10 Score=119.38 Aligned_cols=158 Identities=23% Similarity=0.312 Sum_probs=22.4
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013361 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~ 294 (444)
.+++++.+++++.+++++|.+++++++||+|+ ++++|+||.+|+.. . ...++.+ +|++ ++
T Consensus 101 ~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~--~~lvGivt~~Dl~~----~---------~~~~v~~----im~~-~~ 160 (486)
T 2cu0_A 101 EDVITIAPDETVDFALFLMEKHGIDGLPVVED--EKVVGIITKKDIAA----R---------EGKLVKE----LMTK-EV 160 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCceEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHhcc----C---------CCCCHHH----HccC-CC
Confidence 56889999999999999999999999999987 79999999999874 1 3467888 7886 78
Q ss_pred eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCC
Q 013361 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNP 374 (444)
Q Consensus 295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~ 374 (444)
+++++++++.++++.|.+++++.+||+|+ +++++|++|.+|+++....+.. ..+.... ..-
T Consensus 161 ~~v~~~~~l~eal~~m~~~~~~~lpVVde-~g~lvGiiT~~Dil~~~~~~~~--------~~~~~g~----------~~v 221 (486)
T 2cu0_A 161 ITVPESIEVEEALKIMIENRIDRLPVVDE-RGKLVGLITMSDLVARKKYKNA--------VRDENGE----------LLV 221 (486)
T ss_dssp -----------------------------------------------CCTTC--------CBCTTSC----------BCC
T ss_pred eEECCcCcHHHHHHHHHHcCCCEEEEEec-CCeEEEEEEHHHHHHhhhcccc--------ccccCCc----------eee
Confidence 99999999999999999999999999998 8999999999999988542110 0000000 000
Q ss_pred CeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEe
Q 013361 375 PITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT 414 (444)
Q Consensus 375 ~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT 414 (444)
...+..++ .+.+..|...+++.+ |++..+|+..++++
T Consensus 222 ~~~~~~~~--~~~a~~l~~~gvd~l-vvdta~G~~~~~L~ 258 (486)
T 2cu0_A 222 AAAVSPFD--IKRAIELDKAGVDVI-VVDTAHAHNLKAIK 258 (486)
T ss_dssp EEEECTTC--HHHHHHHHHTTCSEE-EEECSCCCCHHHHH
T ss_pred cceechhh--HHHHHHHHHhcCCce-EEEecCCcEeehhh
Confidence 11233333 566778888898875 56543335544443
No 125
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=98.90 E-value=7.2e-11 Score=122.15 Aligned_cols=121 Identities=15% Similarity=0.178 Sum_probs=68.4
Q ss_pred HHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC--CCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013361 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282 (444)
Q Consensus 205 v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~--~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~ 282 (444)
+.++|. .+++++.+++++.+|+++|.+++++.+||+|++ .++++|+||..|+..... .....++.
T Consensus 110 ~~~im~----~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~---------~~~~~~v~ 176 (514)
T 1jcn_A 110 FEQGFI----TDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE---------KDHTTLLS 176 (514)
T ss_dssp CCTTSC----SSCCCCCC-----------------CEESCC--------CCEECTTTTC---------------------
T ss_pred hhhccc----cCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh---------ccCCCCHH
Confidence 456666 568899999999999999999999999999973 279999999999865311 01356788
Q ss_pred ccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013361 283 DLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 283 ~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
+ +|++ .+++++.+++++.+++++|.+++++.+||+|+ +|+++|+||.+|+++.+..
T Consensus 177 ~----vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~~~ 233 (514)
T 1jcn_A 177 E----VMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVND-CDELVAIIARTDLKKNRDY 233 (514)
T ss_dssp --------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESS-SSCCC----CCCCSSCCCC
T ss_pred H----HhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECC-CCeEEEEEEHHHHHHHhhC
Confidence 8 7863 16899999999999999999999999999998 8999999999999877653
No 126
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.90 E-value=3.5e-09 Score=78.54 Aligned_cols=69 Identities=14% Similarity=0.239 Sum_probs=56.5
Q ss_pred ceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceE
Q 013361 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 296 (444)
Q Consensus 217 ~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~ 296 (444)
++++.+++++.+|+++|.+++++++||+|+ ++++||+|..|+++.+.... . ...+.++++ +|++ ++++
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~--~~lvGIvT~~Di~~~~~~~~-~----~~~~~~V~~----iMt~-~~iT 69 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVVAKG-K----NPKEVKVEE----IMTK-NPVK 69 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTTTTT-C----CGGGCBGGG----TCEE-CTTC
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHhcC-C----CcccCCHHH----hcCC-CCeE
Confidence 689999999999999999999999999985 79999999999987654321 1 124578999 8987 6665
Q ss_pred e
Q 013361 297 I 297 (444)
Q Consensus 297 v 297 (444)
+
T Consensus 70 V 70 (70)
T 3ghd_A 70 I 70 (70)
T ss_dssp C
T ss_pred C
Confidence 3
No 127
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.65 E-value=8.4e-08 Score=70.57 Aligned_cols=65 Identities=26% Similarity=0.408 Sum_probs=54.7
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcc
Q 013361 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNA 361 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~ 361 (444)
+++++.+++++.++++.|.+++++++||+|+ ++++|++|.+|+++.+..... .....++.++|++
T Consensus 1 ~~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~--~~l~Givt~~dl~~~~~~~~~--~~~~~~v~~im~~ 65 (70)
T 3fio_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVVAKGK--NPKEVKVEEIMTK 65 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTTTTTC--CGGGCBGGGTCEE
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHHcCC--CcccCCHHHhcCC
Confidence 3678999999999999999999999999994 899999999999998754221 1246689999985
No 128
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.60 E-value=1e-07 Score=70.13 Aligned_cols=64 Identities=22% Similarity=0.373 Sum_probs=51.7
Q ss_pred CCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccchhhhhhhHHHhhc
Q 013361 374 PPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLLN 443 (444)
Q Consensus 374 ~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~~~~~~~~~~~~~ 443 (444)
+++++++++++.++++.|.+++++++||+|+ + +++|+||.+||++.+..... +..+..++|+|+
T Consensus 1 ~~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~-~-~l~Givt~~dl~~~~~~~~~----~~~~~~v~~im~ 64 (70)
T 3fio_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG-D-EILGVVTERDILDKVVAKGK----NPKEVKVEEIMT 64 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET-T-EEEEEEEHHHHHHHTTTTTC----CGGGCBGGGTCE
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHHHHHHHHcCC----CcccCCHHHhcC
Confidence 3578999999999999999999999999998 6 99999999999998865221 122445666553
No 129
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=35.08 E-value=54 Score=23.86 Aligned_cols=27 Identities=4% Similarity=0.239 Sum_probs=22.8
Q ss_pred CCEEEEEeCCCCeEEEEEeHHHHHHHhH
Q 013361 396 VHRIYVVAGEEAEVVGVITLRDVISCFI 423 (444)
Q Consensus 396 ~~~l~VVd~~~~~lvGvIT~~DIl~~l~ 423 (444)
...+-++|++| ..+|+++..+-|+..-
T Consensus 13 ~~eVrli~~~G-e~lGv~~~~eAl~~A~ 39 (78)
T 1tif_A 13 AREVRLIDQNG-DQLGIKSKQEALEIAA 39 (78)
T ss_dssp CSEEEEECTTS-CEEEEEEHHHHHHHHH
T ss_pred CCEEEEECCCC-cCCCcccHHHHHHHHH
Confidence 45677999998 9999999999998653
No 130
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=24.70 E-value=30 Score=28.80 Aligned_cols=35 Identities=29% Similarity=0.592 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013361 384 LGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 384 l~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
+.+.++.+.+.+..-++|..+ + +++|+|...|.++
T Consensus 121 ~~~~~~~la~~G~T~v~VA~d-~-~l~GvIalaD~iK 155 (156)
T 1svj_A 121 VDQKVDQVARQGATPLVVVEG-S-RVLGVIALKDIVK 155 (156)
T ss_dssp HHHHHHHHHHTTCEEEEEEET-T-EEEEEEEEEECCC
T ss_pred HHHHHHHHHhCCCCEEEEEEC-C-EEEEEEEEecCCC
Confidence 777888888888887877764 4 9999999888653
No 131
>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A
Probab=21.63 E-value=34 Score=29.93 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=32.7
Q ss_pred CCCEEEEEeCCCCeEEEEEeHHHHHHH-hHcCCCccchhhhhhhHHHhh
Q 013361 395 SVHRIYVVAGEEAEVVGVITLRDVISC-FIFEPPNHLDNYFGFSVKDLL 442 (444)
Q Consensus 395 ~~~~l~VVd~~~~~lvGvIT~~DIl~~-l~~e~~~~~~~~~~~~~~~~~ 442 (444)
+-+.-||+|.+| +++||-|..|=... .+..|.+.+-.+....|+||-
T Consensus 125 GdSGsPVvn~dG-~VIGVHt~s~~~g~g~vt~~~g~~~~~~~v~ls~~~ 172 (213)
T 3fan_A 125 GDSGSPVITEAG-ELVGVHTGSNKQGGGIVTRPSGQFCNVKPIKLSELS 172 (213)
T ss_dssp CSTTCEEEETTS-CEEEEEEC-----CCEEECTTSCEEEBCCEEHHHHH
T ss_pred CCCCCccCCCCC-cEEEEEeccCCccceeEEcCCCCEEeeccEeHHHhH
Confidence 456689999998 99999999987763 456777777777777777764
Done!