BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013362
(444 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZI67|NHLC2_CHICK NHL repeat-containing protein 2 OS=Gallus gallus GN=NHLRC2 PE=2
SV=1
Length = 727
Score = 36.6 bits (83), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 25/110 (22%)
Query: 12 DDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEK 71
++ +Y+ D+ENH IR+ D+ ++ TV +GI + G +++ K E+
Sbjct: 283 NNVIYVADTENHLIRKIDLELEIVTTV---AGIGIQ------------GVDKEGGAKGEE 327
Query: 72 LDPQSLIFPWHLM-------KSEDDNLLIINRSFETLWIMDLASGEIKEA 114
Q + PW ++ EDD L I +W + L G++ +
Sbjct: 328 ---QPISSPWDVVFGNSVSGTQEDDVLWIAMAGIHQVWALMLEGGKLPKG 374
>sp|Q6RT24|CENPE_MOUSE Centromere-associated protein E OS=Mus musculus GN=Cenpe PE=1 SV=1
Length = 2474
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 18/158 (11%)
Query: 21 ENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIM-EKLGFERDN------DTKSEKLD 73
E+ I + ++ +++ E + + ++K+N+SL IM E L ERD T++ L+
Sbjct: 1709 ESREIEKLELTQQLNENLKKITLVTKENDSLK--IMDEALREERDQLRKSLQQTEARDLE 1766
Query: 74 PQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKV 133
Q + H+ E I+R ET+ E E + LE + + EKV
Sbjct: 1767 NQEKLRIAHMNLKEHQE--TIDRLMETM-------SEKTEEISNMKMELENVNMKLQEKV 1817
Query: 134 FLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQN 171
LK + + + D+S + KEL GL S I +N
Sbjct: 1818 QELKTSERQRVKLKADASEAKKELKEQGLTLSKIEMEN 1855
>sp|O88628|O51E2_RAT Olfactory receptor 51E2 OS=Rattus norvegicus GN=Or51e2 PE=2 SV=1
Length = 320
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 195 NFQFSNFAILGLP------YWFAFPLERVYAVA 221
NF + F ++G+P +WF FPL +YAVA
Sbjct: 5 NFTHATFMLIGIPGLEEAHFWFGFPLLSMYAVA 37
>sp|A8FD15|PYRC_BACP2 Dihydroorotase OS=Bacillus pumilus (strain SAFR-032) GN=pyrC PE=3
SV=1
Length = 428
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 82 HLMKSEDDNLLIINRSFETLWIMDL------ASGEIKEAVKGFSKVLEICGVLVMEKVFL 135
HL + + + ++ F + ++DL GE KE ++ SK G + +
Sbjct: 34 HLEREDGEEVIDAKGLFVSPGLIDLHVHLREPGGEKKETIETGSKAAARGGYTTIAAMPN 93
Query: 136 LKQMP-----QDWLLHQIDSSCSLKELPYAGLISSSIA 168
+ +P +WL+++I+ + S++ LPYA + + I
Sbjct: 94 TRPVPDTKEQMEWLMNRIEETSSVRVLPYASITTRQIG 131
>sp|Q8DU15|TRUB_STRMU tRNA pseudouridine synthase B OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=truB PE=3 SV=1
Length = 293
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 16/118 (13%)
Query: 307 PESESNIEDETTTSDLRSEDDTVHIDCAVNTSPGTSEVIISAALYLKLRRYPDQQDDGRE 366
P+ + I D TSDL ED+ H D V+ S GT ++ L KL
Sbjct: 142 PQRQVRIYDFKRTSDLVFEDECCHFDFRVSCSKGTYIRTLAVDLGQKL------------ 189
Query: 367 KYAARISDILKLGRSGAMQRDSFIRFLLKSNQDLRDVIFVKPLHVSIQFDTLDHPKAD 424
YA+ +S + + +G + + + +D F+ P I++ LD P+ D
Sbjct: 190 GYASHMSFLKRTASAGLDLSQALTLAEIAEKVEEKDFSFLLP----IEYGVLDLPRID 243
>sp|Q8JIF5|ERAL1_CHICK GTPase Era, mitochondrial OS=Gallus gallus GN=ERAL1 PE=1 SV=1
Length = 461
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 55 IMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEA 114
I++ G K KL+ L PW MK D L++++ S W + S E+
Sbjct: 142 ILDTPGLTSPMKAKRHKLEAAMLTDPWDSMKHADLVLVLVDVSDH--WTRNSLSLEV--- 196
Query: 115 VKGFSKVLEICGVLVMEKVFLLKQ 138
+K S+ I VLV+ KV LLK+
Sbjct: 197 LKCLSQFPHIPSVLVLNKVDLLKK 220
>sp|Q0SN37|LSPA_BORAP Lipoprotein signal peptidase OS=Borrelia afzelii (strain PKo)
GN=lspA PE=3 SV=1
Length = 170
Score = 32.0 bits (71), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 130 MEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRE 189
++K+F L MP L+ S SLKE IS + F VG I RL R
Sbjct: 69 LKKIFFL-AMPIFILIFIF--SLSLKEKNRIARISLLLIFSGG------VGNVIDRLFRP 119
Query: 190 SGVCSNFQFSNFAILGLPYWFAFPLERVYAVAG 222
SGV F + I GL W F Y V G
Sbjct: 120 SGVVDFLDFKFYGIFGLDRWPTFNFADSYVVIG 152
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,119,138
Number of Sequences: 539616
Number of extensions: 6809060
Number of successful extensions: 15359
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 15349
Number of HSP's gapped (non-prelim): 21
length of query: 444
length of database: 191,569,459
effective HSP length: 121
effective length of query: 323
effective length of database: 126,275,923
effective search space: 40787123129
effective search space used: 40787123129
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)