Query 013362
Match_columns 444
No_of_seqs 163 out of 442
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 03:05:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02919 haloacid dehalogenase 99.9 1.5E-20 3.3E-25 213.3 20.5 198 1-243 624-838 (1057)
2 PLN02919 haloacid dehalogenase 99.8 1.1E-18 2.4E-23 198.2 23.7 233 1-281 740-976 (1057)
3 KOG4659 Uncharacterized conser 99.2 9.1E-11 2E-15 132.8 13.7 98 4-118 410-512 (1899)
4 PF08450 SGL: SMP-30/Gluconola 99.1 2.6E-09 5.6E-14 101.0 13.9 197 3-251 2-223 (246)
5 PF08450 SGL: SMP-30/Gluconola 98.7 1.5E-07 3.3E-12 89.0 11.0 83 2-117 135-223 (246)
6 COG3391 Uncharacterized conser 98.5 1.4E-05 3.1E-10 82.0 20.3 210 2-298 75-302 (381)
7 PF01436 NHL: NHL repeat; Int 98.4 5.1E-07 1.1E-11 60.7 4.5 28 77-104 1-28 (28)
8 KOG4659 Uncharacterized conser 98.3 2.9E-06 6.2E-11 97.5 10.0 152 2-189 534-691 (1899)
9 COG4257 Vgb Streptogramin lyas 98.3 1.2E-05 2.6E-10 81.0 13.3 121 2-197 63-184 (353)
10 PF10282 Lactonase: Lactonase, 98.3 0.00014 3E-09 73.3 20.9 182 2-252 145-339 (345)
11 KOG1520 Predicted alkaloid syn 98.2 5.4E-06 1.2E-10 85.9 10.5 135 2-207 116-267 (376)
12 PF01436 NHL: NHL repeat; Int 98.2 3E-06 6.5E-11 56.9 4.7 27 1-28 2-28 (28)
13 PRK11028 6-phosphogluconolacto 98.1 0.0001 2.2E-09 72.5 16.6 129 2-196 81-214 (330)
14 COG3391 Uncharacterized conser 98.1 0.00011 2.4E-09 75.6 17.1 125 2-196 117-246 (381)
15 PF10282 Lactonase: Lactonase, 98.1 0.00012 2.6E-09 73.8 15.9 145 2-211 193-344 (345)
16 COG4257 Vgb Streptogramin lyas 98.1 9.3E-05 2E-09 74.7 14.7 174 2-219 105-291 (353)
17 COG3386 Gluconolactonase [Carb 98.0 9.1E-05 2E-09 75.0 13.5 145 3-190 27-194 (307)
18 PRK11028 6-phosphogluconolacto 97.9 0.0007 1.5E-08 66.6 16.7 82 2-112 127-212 (330)
19 TIGR02604 Piru_Ver_Nterm putat 97.8 0.00052 1.1E-08 70.0 15.9 70 2-105 15-96 (367)
20 TIGR03866 PQQ_ABC_repeats PQQ- 97.7 0.0032 6.9E-08 58.6 16.9 129 2-198 158-289 (300)
21 COG3386 Gluconolactonase [Carb 97.6 0.00082 1.8E-08 68.2 12.8 86 2-115 164-251 (307)
22 PF03088 Str_synth: Strictosid 97.5 0.00043 9.4E-09 58.7 7.4 69 82-190 2-88 (89)
23 TIGR02604 Piru_Ver_Nterm putat 97.4 0.0016 3.5E-08 66.5 12.1 30 77-106 183-212 (367)
24 TIGR03866 PQQ_ABC_repeats PQQ- 97.4 0.013 2.9E-07 54.4 16.6 75 2-111 32-107 (300)
25 PF03088 Str_synth: Strictosid 97.3 0.0014 3E-08 55.7 8.2 68 5-107 2-87 (89)
26 KOG4499 Ca2+-binding protein R 97.2 0.0014 2.9E-08 65.4 8.7 98 3-125 160-260 (310)
27 PF13360 PQQ_2: PQQ-like domai 96.9 0.096 2.1E-06 48.3 17.1 128 79-253 27-155 (238)
28 TIGR02658 TTQ_MADH_Hv methylam 96.5 0.016 3.5E-07 60.1 10.4 78 2-114 246-338 (352)
29 PF05096 Glu_cyclase_2: Glutam 96.5 0.065 1.4E-06 53.9 14.3 149 4-196 48-210 (264)
30 TIGR02658 TTQ_MADH_Hv methylam 96.5 0.052 1.1E-06 56.4 13.9 120 11-200 11-148 (352)
31 smart00135 LY Low-density lipo 96.4 0.0086 1.9E-07 41.5 5.0 31 2-32 10-40 (43)
32 COG2706 3-carboxymuconate cycl 96.1 0.3 6.5E-06 50.8 16.7 146 2-212 192-344 (346)
33 PF13360 PQQ_2: PQQ-like domai 96.1 0.82 1.8E-05 42.1 18.0 123 77-243 112-235 (238)
34 PF02239 Cytochrom_D1: Cytochr 96.0 0.39 8.6E-06 49.8 17.1 74 4-114 40-116 (369)
35 PF07995 GSDH: Glucose / Sorbo 95.9 0.093 2E-06 53.3 11.6 94 1-109 181-291 (331)
36 KOG1214 Nidogen and related ba 95.8 0.12 2.7E-06 58.8 13.0 185 3-241 1027-1229(1289)
37 PF06977 SdiA-regulated: SdiA- 95.7 0.062 1.3E-06 53.3 9.3 76 2-104 172-247 (248)
38 PF03022 MRJP: Major royal jel 95.7 0.36 7.8E-06 48.5 14.9 85 3-118 3-107 (287)
39 PF05787 DUF839: Bacterial pro 95.5 0.11 2.3E-06 56.7 11.3 83 1-100 350-459 (524)
40 PF06977 SdiA-regulated: SdiA- 95.5 0.71 1.5E-05 45.9 15.9 184 2-220 23-231 (248)
41 TIGR03032 conserved hypothetic 95.2 0.11 2.4E-06 53.6 9.6 98 77-200 202-302 (335)
42 PF13449 Phytase-like: Esteras 95.1 0.84 1.8E-05 46.3 15.5 32 79-111 86-123 (326)
43 TIGR03118 PEPCTERM_chp_1 conse 95.0 0.32 7E-06 50.2 12.2 46 75-120 241-293 (336)
44 COG2706 3-carboxymuconate cycl 94.8 3.7 8E-05 43.0 19.3 177 2-245 146-330 (346)
45 PF02239 Cytochrom_D1: Cytochr 94.8 0.37 8E-06 50.0 12.3 68 12-115 5-75 (369)
46 PRK04792 tolB translocation pr 94.6 3 6.6E-05 44.0 18.7 34 83-116 267-303 (448)
47 PF03022 MRJP: Major royal jel 94.3 0.19 4.2E-06 50.4 8.6 64 4-100 189-258 (287)
48 KOG1520 Predicted alkaloid syn 94.2 0.47 1E-05 50.0 11.3 38 77-115 114-152 (376)
49 PRK11138 outer membrane biogen 94.0 1.5 3.3E-05 44.8 14.6 103 12-194 256-358 (394)
50 TIGR03606 non_repeat_PQQ dehyd 93.9 1.9 4.2E-05 46.5 15.4 39 2-41 31-69 (454)
51 TIGR03118 PEPCTERM_chp_1 conse 93.8 3.1 6.8E-05 43.2 16.1 29 2-31 24-52 (336)
52 PRK04922 tolB translocation pr 93.8 5.3 0.00012 41.6 18.4 35 82-116 252-289 (433)
53 PRK03629 tolB translocation pr 93.7 2.6 5.6E-05 44.2 15.9 34 82-115 291-327 (429)
54 PRK04792 tolB translocation pr 93.3 2.6 5.7E-05 44.5 15.2 33 83-115 311-346 (448)
55 TIGR03606 non_repeat_PQQ dehyd 93.2 0.53 1.1E-05 50.7 9.8 39 77-115 29-67 (454)
56 PRK02889 tolB translocation pr 93.1 9.3 0.0002 39.9 18.7 34 82-115 244-280 (427)
57 PRK01742 tolB translocation pr 93.1 7 0.00015 40.8 17.7 35 82-116 252-289 (429)
58 PF07995 GSDH: Glucose / Sorbo 93.0 0.5 1.1E-05 48.0 8.9 67 2-103 254-331 (331)
59 KOG4499 Ca2+-binding protein R 92.9 0.31 6.8E-06 49.0 7.1 88 78-197 158-250 (310)
60 KOG1214 Nidogen and related ba 92.8 0.51 1.1E-05 54.1 9.3 150 2-199 1069-1236(1289)
61 PRK03629 tolB translocation pr 92.8 4.2 9.1E-05 42.6 15.7 35 82-116 247-284 (429)
62 TIGR03032 conserved hypothetic 92.6 0.54 1.2E-05 48.8 8.5 37 3-41 205-241 (335)
63 PRK04922 tolB translocation pr 92.6 4.2 9.1E-05 42.4 15.3 33 83-115 297-332 (433)
64 PRK00178 tolB translocation pr 92.4 15 0.00032 37.9 19.2 34 83-116 248-284 (430)
65 TIGR03300 assembly_YfgL outer 92.4 4.1 8.9E-05 41.1 14.5 81 85-208 277-358 (377)
66 PRK04043 tolB translocation pr 92.3 3.4 7.4E-05 43.6 14.4 32 85-116 240-274 (419)
67 COG2133 Glucose/sorbosone dehy 92.2 2.1 4.5E-05 45.6 12.6 97 1-109 239-352 (399)
68 PF01731 Arylesterase: Arylest 92.1 0.24 5.1E-06 42.0 4.5 30 2-31 55-84 (86)
69 PF14339 DUF4394: Domain of un 92.0 10 0.00022 37.9 16.4 186 4-243 30-218 (236)
70 TIGR02800 propeller_TolB tol-p 92.0 6.6 0.00014 39.8 15.5 32 84-115 284-318 (417)
71 PRK05137 tolB translocation pr 91.8 5.5 0.00012 41.5 15.1 35 82-116 250-287 (435)
72 TIGR03300 assembly_YfgL outer 91.7 16 0.00035 36.8 18.1 161 5-251 60-221 (377)
73 TIGR02276 beta_rpt_yvtn 40-res 91.6 0.9 2E-05 31.5 6.3 29 10-38 1-29 (42)
74 PRK00178 tolB translocation pr 91.3 8.2 0.00018 39.8 15.6 32 84-115 293-327 (430)
75 smart00135 LY Low-density lipo 91.2 0.58 1.3E-05 32.2 5.0 32 77-108 8-40 (43)
76 COG4946 Uncharacterized protei 91.1 15 0.00033 40.5 17.6 137 77-261 356-497 (668)
77 PRK05137 tolB translocation pr 91.1 22 0.00047 37.1 19.4 35 82-116 294-331 (435)
78 TIGR02800 propeller_TolB tol-p 90.7 11 0.00024 38.1 15.7 35 81-115 325-362 (417)
79 PRK02888 nitrous-oxide reducta 90.4 0.64 1.4E-05 51.9 6.9 85 1-108 321-405 (635)
80 PF00058 Ldl_recept_b: Low-den 90.3 1.1 2.3E-05 32.7 5.8 27 13-39 1-28 (42)
81 PF05096 Glu_cyclase_2: Glutam 89.4 3.1 6.6E-05 42.1 10.2 156 78-248 45-213 (264)
82 KOG0266 WD40 repeat-containing 88.8 32 0.0007 36.5 17.9 76 4-115 207-284 (456)
83 PRK02889 tolB translocation pr 88.5 15 0.00034 38.3 15.1 34 82-115 288-324 (427)
84 PRK01029 tolB translocation pr 88.1 23 0.00051 37.3 16.2 89 82-211 331-424 (428)
85 COG3211 PhoX Predicted phospha 87.3 5.8 0.00013 44.2 11.3 79 2-99 418-521 (616)
86 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.9 12 0.00026 40.8 13.6 76 12-113 69-144 (527)
87 PRK01742 tolB translocation pr 86.7 20 0.00044 37.4 14.7 34 81-114 295-331 (429)
88 cd00200 WD40 WD40 domain, foun 86.7 22 0.00047 31.4 14.3 32 80-111 138-169 (289)
89 COG3204 Uncharacterized protei 86.5 2.6 5.7E-05 43.5 7.8 68 4-97 236-303 (316)
90 PF13449 Phytase-like: Esteras 86.4 5.2 0.00011 40.6 9.9 83 2-108 86-193 (326)
91 COG3823 Glutamine cyclotransfe 86.4 6.8 0.00015 39.1 10.3 153 4-201 49-217 (262)
92 PF14583 Pectate_lyase22: Olig 84.9 23 0.0005 37.8 14.0 49 181-236 168-222 (386)
93 cd00216 PQQ_DH Dehydrogenases 83.6 22 0.00047 38.1 13.5 76 12-115 61-136 (488)
94 PRK04043 tolB translocation pr 82.5 41 0.00089 35.6 14.9 33 84-116 325-366 (419)
95 COG3204 Uncharacterized protei 82.4 66 0.0014 33.6 15.6 180 4-218 89-291 (316)
96 cd00200 WD40 WD40 domain, foun 82.1 35 0.00076 30.0 15.9 70 4-109 13-83 (289)
97 PTZ00421 coronin; Provisional 82.0 51 0.0011 35.9 15.7 32 81-112 129-161 (493)
98 PTZ00420 coronin; Provisional 81.2 93 0.002 34.8 17.5 32 81-112 171-202 (568)
99 TIGR02276 beta_rpt_yvtn 40-res 79.1 4.1 8.9E-05 28.1 4.2 24 89-112 4-27 (42)
100 KOG0266 WD40 repeat-containing 78.8 95 0.0021 33.0 16.3 73 4-112 250-323 (456)
101 PRK02888 nitrous-oxide reducta 77.9 30 0.00065 39.2 12.5 34 77-110 320-354 (635)
102 PRK11138 outer membrane biogen 77.2 91 0.002 32.0 16.6 106 88-248 256-363 (394)
103 KOG1215 Low-density lipoprotei 76.1 33 0.00073 39.4 12.6 118 2-194 481-603 (877)
104 PF14269 Arylsulfotran_2: Aryl 75.7 32 0.0007 34.9 11.2 40 79-118 145-184 (299)
105 PF01731 Arylesterase: Arylest 74.6 5.6 0.00012 33.7 4.6 31 77-107 53-84 (86)
106 PF05935 Arylsulfotrans: Aryls 73.9 78 0.0017 34.1 14.1 40 78-117 271-311 (477)
107 COG2133 Glucose/sorbosone dehy 73.1 21 0.00046 38.2 9.4 76 2-107 315-397 (399)
108 PF01011 PQQ: PQQ enzyme repea 73.0 6.7 0.00014 27.6 3.9 26 89-115 1-26 (38)
109 KOG1446 Histone H3 (Lys4) meth 71.3 50 0.0011 34.4 11.2 81 4-117 191-272 (311)
110 PF14583 Pectate_lyase22: Olig 70.5 22 0.00047 38.0 8.7 67 90-196 50-117 (386)
111 TIGR03075 PQQ_enz_alc_DH PQQ-d 70.0 60 0.0013 35.6 12.2 126 88-249 69-200 (527)
112 smart00564 PQQ beta-propeller 66.6 13 0.00027 24.6 4.1 25 87-112 5-29 (33)
113 PF06433 Me-amine-dh_H: Methyl 66.2 86 0.0019 33.1 11.9 81 8-111 191-281 (342)
114 PTZ00420 coronin; Provisional 65.4 2.3E+02 0.0051 31.7 15.8 31 81-111 129-160 (568)
115 PTZ00421 coronin; Provisional 65.3 53 0.0012 35.7 10.7 31 81-111 172-202 (493)
116 KOG0296 Angio-associated migra 64.1 1.8E+02 0.004 31.2 13.8 33 168-200 305-337 (399)
117 KOG0647 mRNA export protein (c 63.6 31 0.00067 36.1 8.0 80 4-116 31-111 (347)
118 KOG1274 WD40 repeat protein [G 62.9 76 0.0016 37.4 11.6 106 4-118 17-137 (933)
119 PRK01029 tolB translocation pr 62.0 89 0.0019 33.0 11.4 35 82-116 375-412 (428)
120 PF02333 Phytase: Phytase; In 61.9 59 0.0013 34.7 9.9 76 2-108 209-291 (381)
121 TIGR03074 PQQ_membr_DH membran 61.9 2.2E+02 0.0048 33.1 15.2 57 226-282 410-488 (764)
122 PF00058 Ldl_recept_b: Low-den 60.9 40 0.00087 24.4 6.1 30 171-200 1-31 (42)
123 KOG0310 Conserved WD40 repeat- 59.2 1.3E+02 0.0027 33.3 11.9 154 4-245 72-232 (487)
124 KOG0279 G protein beta subunit 59.1 1.6E+02 0.0034 30.8 11.9 33 161-193 234-266 (315)
125 PF06739 SBBP: Beta-propeller 59.0 7.7 0.00017 27.8 2.0 22 77-98 12-33 (38)
126 cd00216 PQQ_DH Dehydrogenases 56.1 2.5E+02 0.0054 30.2 13.6 45 166-212 402-447 (488)
127 PF01011 PQQ: PQQ enzyme repea 55.8 21 0.00045 25.1 3.8 24 171-195 1-24 (38)
128 PF14269 Arylsulfotran_2: Aryl 55.1 2.5E+02 0.0053 28.6 16.1 138 2-198 145-298 (299)
129 PF05787 DUF839: Bacterial pro 54.6 85 0.0018 34.6 10.0 34 76-109 348-401 (524)
130 KOG1446 Histone H3 (Lys4) meth 53.2 2.9E+02 0.0064 28.9 13.5 125 3-195 143-268 (311)
131 KOG0291 WD40-repeat-containing 53.0 2.2E+02 0.0047 33.4 12.8 83 4-121 396-480 (893)
132 COG4946 Uncharacterized protei 49.9 4.2E+02 0.0092 29.8 17.0 40 77-116 401-440 (668)
133 TIGR03074 PQQ_membr_DH membran 49.8 4.5E+02 0.0097 30.6 15.1 99 169-273 259-374 (764)
134 KOG0281 Beta-TrCP (transducin 49.2 73 0.0016 34.2 8.0 188 14-276 248-453 (499)
135 COG1520 FOG: WD40-like repeat 45.9 3.4E+02 0.0074 27.6 16.2 35 77-115 103-137 (370)
136 KOG0291 WD40-repeat-containing 44.9 1E+02 0.0022 36.0 8.7 77 4-115 439-518 (893)
137 KOG0772 Uncharacterized conser 43.5 1.6E+02 0.0035 33.1 9.8 27 81-107 368-394 (641)
138 PF13570 PQQ_3: PQQ-like domai 42.7 46 0.001 23.2 3.9 23 84-108 18-40 (40)
139 KOG1215 Low-density lipoprotei 41.8 1.5E+02 0.0032 34.2 9.8 75 77-192 566-642 (877)
140 COG3211 PhoX Predicted phospha 40.3 1.2E+02 0.0027 34.2 8.4 34 76-109 415-465 (616)
141 COG1520 FOG: WD40-like repeat 39.5 4.3E+02 0.0093 26.9 12.4 113 85-245 65-178 (370)
142 COG5276 Uncharacterized conser 38.8 2.4E+02 0.0052 29.9 9.7 68 4-107 132-199 (370)
143 KOG1539 WD repeat protein [Gen 36.0 6.4E+02 0.014 30.0 13.3 87 81-202 497-588 (910)
144 PF05935 Arylsulfotrans: Aryls 32.2 5.7E+02 0.012 27.6 11.8 109 2-115 272-403 (477)
145 KOG0282 mRNA splicing factor [ 31.0 1.7E+02 0.0038 32.3 7.6 115 4-193 218-334 (503)
146 COG3823 Glutamine cyclotransfe 30.2 1.4E+02 0.003 30.2 6.2 27 89-115 186-212 (262)
147 PF08309 LVIVD: LVIVD repeat; 29.9 1.1E+02 0.0024 22.6 4.3 26 4-32 5-30 (42)
148 PLN00181 protein SPA1-RELATED; 29.4 8.9E+02 0.019 27.6 16.4 31 81-111 579-610 (793)
149 PF12601 Rubi_NSP_C: Rubivirus 27.7 25 0.00054 28.0 0.5 11 290-300 36-46 (66)
150 KOG0649 WD40 repeat protein [G 27.2 3.3E+02 0.0071 28.3 8.3 38 81-119 118-156 (325)
151 PF00930 DPPIV_N: Dipeptidyl p 26.8 4.7E+02 0.01 26.6 9.7 31 87-117 247-278 (353)
152 KOG0296 Angio-associated migra 26.4 8.6E+02 0.019 26.4 11.9 70 83-193 154-224 (399)
153 PF02333 Phytase: Phytase; In 26.3 4.1E+02 0.0089 28.5 9.3 86 79-198 209-301 (381)
154 KOG0289 mRNA splicing factor [ 25.5 3.2E+02 0.0069 30.2 8.3 70 4-108 351-420 (506)
155 KOG0281 Beta-TrCP (transducin 25.2 2E+02 0.0044 31.0 6.7 69 14-120 331-401 (499)
156 KOG2106 Uncharacterized conser 24.6 1.1E+03 0.023 26.9 12.8 90 79-202 370-459 (626)
157 PF00400 WD40: WD domain, G-be 24.5 1.5E+02 0.0032 19.6 3.9 26 80-105 14-39 (39)
158 KOG0649 WD40 repeat protein [G 24.5 5.3E+02 0.011 26.8 9.2 34 5-39 119-152 (325)
159 PF05567 Neisseria_PilC: Neiss 23.1 1.9E+02 0.0042 29.9 6.1 19 89-108 222-240 (335)
160 KOG0272 U4/U6 small nuclear ri 23.1 2.8E+02 0.006 30.4 7.3 76 4-115 307-384 (459)
161 PF14339 DUF4394: Domain of un 22.3 5.7E+02 0.012 25.8 9.0 31 12-42 144-175 (236)
162 COG3670 Lignostilbene-alpha,be 22.1 1.9E+02 0.004 32.1 5.9 74 180-254 398-481 (490)
163 KOG0303 Actin-binding protein 22.1 7.3E+02 0.016 27.3 10.1 35 4-39 177-211 (472)
164 PLN00181 protein SPA1-RELATED; 21.9 1.2E+03 0.026 26.5 14.4 30 81-110 621-651 (793)
165 smart00284 OLF Olfactomedin-li 21.8 7.7E+02 0.017 25.1 9.8 80 13-115 84-169 (255)
166 KOG0319 WD40-repeat-containing 21.5 3.6E+02 0.0078 31.4 8.1 72 6-111 25-96 (775)
167 KOG3567 Peptidylglycine alpha- 21.2 97 0.0021 34.2 3.6 72 3-100 170-241 (501)
168 PF06433 Me-amine-dh_H: Methyl 21.1 8.4E+02 0.018 26.0 10.3 34 82-115 293-328 (342)
169 KOG0271 Notchless-like WD40 re 20.8 1.1E+03 0.025 25.8 13.1 30 81-110 161-190 (480)
170 KOG0640 mRNA cleavage stimulat 20.4 7.9E+02 0.017 26.4 9.8 80 4-115 220-300 (430)
No 1
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.85 E-value=1.5e-20 Score=213.34 Aligned_cols=198 Identities=16% Similarity=0.185 Sum_probs=142.4
Q ss_pred CCcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362 1 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP 80 (444)
Q Consensus 1 ~~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P 80 (444)
++|+||++|++++.|||||++||+||+||+.++.|+|++|+|.. +.....++.+... .|++|
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~--------g~~~~gg~~~~~~----------~ln~P 685 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTK--------GSDYQGGKKGTSQ----------VLNSP 685 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcc--------cCCCCCChhhhHh----------hcCCC
Confidence 47999999998889999999999999999999999999999754 1110111112222 39999
Q ss_pred ceeEEcC-CCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362 81 WHLMKSE-DDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY 159 (444)
Q Consensus 81 ~gL~~d~-dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~ 159 (444)
|+|++++ +|.|||+|+++|+||++|+.+|.+.++++.+.. ....|.. . ..+.
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~-~~~~g~~---------------------~-----~~~~ 738 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE-RNLNGSS---------------------G-----TSTS 738 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc-ccCCCCc---------------------c-----cccc
Confidence 9999998 589999999999999999999999888752110 0000000 0 0001
Q ss_pred ccccccccc--cCCeEEEEeCCCCeEEEEeCCCCeEEEeee------------ccccccCCceeeeeccceeeecc--cc
Q 013362 160 AGLISSSIA--FQNHILLCDIVGQRIMRLNRESGVCSNFQF------------SNFAILGLPYWFAFPLERVYAVA--GG 223 (444)
Q Consensus 160 a~~~Sgla~--~~~~LyIADT~nhRIRkvdl~tG~vST~~f------------sg~g~lg~P~~l~~PL~~v~~~~--~~ 223 (444)
...|.+++. .++.|||||+++|+||++|+++|.++.+.. ...+..+....|+.|...+++.. .+
T Consensus 739 ~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LY 818 (1057)
T PLN02919 739 FAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIY 818 (1057)
T ss_pred ccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEE
Confidence 112445443 345699999999999999999987665431 11112334467888998887653 56
Q ss_pred cCCcccceeeeeecCCCeee
Q 013362 224 HQGSWTDHIQRCSLLPGRID 243 (444)
Q Consensus 224 ~~g~~~~~i~~v~~~pGri~ 243 (444)
++++.+|+|++++...|++.
T Consensus 819 VADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 819 VADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred EEECCCCEEEEEECCCCeEE
Confidence 79999999999999888765
No 2
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.82 E-value=1.1e-18 Score=198.23 Aligned_cols=233 Identities=13% Similarity=0.119 Sum_probs=150.6
Q ss_pred CCcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362 1 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP 80 (444)
Q Consensus 1 ~~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P 80 (444)
.+|.||+++++++.|||||++||+||++|+.++.+.+++|.... .+..++.|+ +.+|.+..+. |++|
T Consensus 740 ~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~--~~~~l~~fG-~~dG~g~~~~----------l~~P 806 (1057)
T PLN02919 740 AQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT--FSDNLFKFG-DHDGVGSEVL----------LQHP 806 (1057)
T ss_pred cCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc--cCccccccc-CCCCchhhhh----------ccCC
Confidence 36999999999989999999999999999999888888764321 111122333 3345555555 9999
Q ss_pred ceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcc
Q 013362 81 WHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYA 160 (444)
Q Consensus 81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a 160 (444)
.+|+++++|+|||||++||+|++||+.++.+.++++.+.... .+|.. ..+ ..
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~-~dG~~----------------------~~a-----~l 858 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGF-KDGKA----------------------LKA-----QL 858 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCC-CCCcc----------------------ccc-----cc
Confidence 999999999999999999999999999999999986221100 00100 000 01
Q ss_pred cccccccc-cCCeEEEEeCCCCeEEEEeCCCCeE---EEeeeccccccCCceeeeeccceeeecccccCCcccceeeeee
Q 013362 161 GLISSSIA-FQNHILLCDIVGQRIMRLNRESGVC---SNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCS 236 (444)
Q Consensus 161 ~~~Sgla~-~~~~LyIADT~nhRIRkvdl~tG~v---ST~~fsg~g~lg~P~~l~~PL~~v~~~~~~~~g~~~~~i~~v~ 236 (444)
..|.+++. .++.|||+|+.||+||++|++++.+ .++.+.+..... ...-...+++.- .. .++..-.+..+.
T Consensus 859 ~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~-~~-~~~~~~~~~~~~ 933 (1057)
T PLN02919 859 SEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAAEILTLELKGVQPPR---PKSKSLKRLRRR-SS-ADTQVIKVDGVT 933 (1057)
T ss_pred CCceEEEEeCCCCEEEEECCCCEEEEEECCCCccceeEeeccccccCCC---Ccccchhhhhhc-cc-ccCceeecCCcc
Confidence 12445443 3568999999999999999999976 355555543333 111112233222 11 344444444455
Q ss_pred cCCCeeeEEEeeeCCCCcccccccccceeeeeeccceeeeecccc
Q 013362 237 LLPGRIDIKVNVDIPSDTELVESLQEGCIWRQARGTASVVLRAED 281 (444)
Q Consensus 237 ~~pGri~i~v~v~~P~~~el~~p~~e~ciwrq~rg~~~~~~~~~~ 281 (444)
..+| +|++.+.+|+|+.+.+-+.-.-.-...--.+.+|--.+|
T Consensus 934 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1057)
T PLN02919 934 SLEG--DLQLKISLPPGYHFSKEARSKFEVEVEPENAVDIDPDEG 976 (1057)
T ss_pred cccc--eEEEEEECCCCCccCcCCCceeEEEeccCCceEecCCCc
Confidence 5556 888999999999998765543222222124444444444
No 3
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.22 E-value=9.1e-11 Score=132.78 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=79.2
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEEC-----CCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCC
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADM-----GRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI 78 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl-----~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln 78 (444)
+=||++|-.+.|||.|++.|.|-||.- ..+.-+.|||+|++ |=.+-. ..|++|.|.+|. |+
T Consensus 410 Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~--Clp~de--sCGDGalA~dA~----------L~ 475 (1899)
T KOG4659|consen 410 YYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEV--CLPADE--SCGDGALAQDAQ----------LI 475 (1899)
T ss_pred eEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcC--cccccc--ccCcchhcccce----------ec
Confidence 458899988899999999999999853 25678999999986 321111 136677777777 99
Q ss_pred CcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCC
Q 013362 79 FPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGF 118 (444)
Q Consensus 79 ~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~ 118 (444)
+|.||++|.+|.||+||.- .||+||. +|.|+|+.|..
T Consensus 476 ~PkGIa~dk~g~lYfaD~t--~IR~iD~-~giIstlig~~ 512 (1899)
T KOG4659|consen 476 FPKGIAFDKMGNLYFADGT--RIRVIDT-TGIISTLIGTT 512 (1899)
T ss_pred cCCceeEccCCcEEEeccc--EEEEecc-CceEEEeccCC
Confidence 9999999999999999976 5999995 79999998633
No 4
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.06 E-value=2.6e-09 Score=100.98 Aligned_cols=197 Identities=16% Similarity=0.199 Sum_probs=118.8
Q ss_pred cceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCC---CcCc-cCCcchhhhhcccCcccc--cCcccc----CC
Q 013362 3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTS---GISK-KNNSLWAWIMEKLGFERD--NDTKSE----KL 72 (444)
Q Consensus 3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG---~~~~-~~~~l~g~~~~~~G~a~~--a~~~~~----~~ 72 (444)
|-|++||+..+.||++|..+++|.++++.++..+++.-.+ .... ..+.++ .....|...- ...+.+ .+
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~--v~~~~~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLY--VADSGGIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEE--EEETTCEEEEETTTTEEEEEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEE--EEEcCceEEEecCCCcEEEEeecc
Confidence 6799999867799999999999999999999887754221 1111 112121 1111222110 000111 11
Q ss_pred -CCCCCCCcceeEEcCCCeEEEEeCCC--------CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCccc
Q 013362 73 -DPQSLIFPWHLMKSEDDNLLIINRSF--------ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDW 143 (444)
Q Consensus 73 -~~~~Ln~P~gL~~d~dG~LYIADagn--------h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~ 143 (444)
....++.|-+++++++|+||++|.+. .+|++++++ |+++.+..+...
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~----------------------- 135 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF----------------------- 135 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS-----------------------
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccc-----------------------
Confidence 22269999999999999999999977 569999998 888877643211
Q ss_pred ccccccccccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCC--CCeEEEee-eccc-cccCCceeeeeccceeee
Q 013362 144 LLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRE--SGVCSNFQ-FSNF-AILGLPYWFAFPLERVYA 219 (444)
Q Consensus 144 ~~~~~~~~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~--tG~vST~~-fsg~-g~lg~P~~l~~PL~~v~~ 219 (444)
+.|+.+ ...++.||++|+.+++|.+++++ ++.++... |... +.. ..|-+.+++
T Consensus 136 ----------pNGi~~-------s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------g~pDG~~vD 192 (246)
T PF08450_consen 136 ----------PNGIAF-------SPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP------GYPDGLAVD 192 (246)
T ss_dssp ----------EEEEEE-------ETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS------CEEEEEEEB
T ss_pred ----------ccceEE-------CCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC------cCCCcceEc
Confidence 112222 23466899999999999999996 44344322 2111 112 334444443
Q ss_pred -ccccc-CCcccceeeeeecCCCeeeEEEeeeCC
Q 013362 220 -VAGGH-QGSWTDHIQRCSLLPGRIDIKVNVDIP 251 (444)
Q Consensus 220 -~~~~~-~g~~~~~i~~v~~~pGri~i~v~v~~P 251 (444)
.|+.+ +.-...+|++++.- |++. -.+.+|
T Consensus 193 ~~G~l~va~~~~~~I~~~~p~-G~~~--~~i~~p 223 (246)
T PF08450_consen 193 SDGNLWVADWGGGRIVVFDPD-GKLL--REIELP 223 (246)
T ss_dssp TTS-EEEEEETTTEEEEEETT-SCEE--EEEE-S
T ss_pred CCCCEEEEEcCCCEEEEECCC-ccEE--EEEcCC
Confidence 33332 43456789999887 8754 344555
No 5
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.67 E-value=1.5e-07 Score=88.95 Aligned_cols=83 Identities=22% Similarity=0.243 Sum_probs=62.1
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCC--CeEE---EeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCC
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGR--RVLE---TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQS 76 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~t--g~Vt---TVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~ 76 (444)
.|.||+++++++.|||+|+.+++|.++++.. +.++ +++.-. . .
T Consensus 135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~-----------------------~---------~ 182 (246)
T PF08450_consen 135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP-----------------------G---------G 182 (246)
T ss_dssp SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S-----------------------S---------S
T ss_pred cccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcC-----------------------C---------C
Confidence 5999999999999999999999999999852 2222 111100 0 0
Q ss_pred CCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEE-eecC
Q 013362 77 LIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKE-AVKG 117 (444)
Q Consensus 77 Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~T-iagG 117 (444)
...|-++++|.+|+||||+.++++|+++|++ |++.. +.-+
T Consensus 183 ~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 183 PGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp SCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred CcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence 2458899999999999999999999999998 76544 4433
No 6
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=1.4e-05 Score=82.03 Aligned_cols=210 Identities=16% Similarity=0.179 Sum_probs=136.4
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW 81 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~ 81 (444)
.|+|+++++.+..+|+.+..++.|+.||..+.++..-.+.| ..|.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-----------------------------------~~P~ 119 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-----------------------------------LGPV 119 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-----------------------------------cCCc
Confidence 58999999999999999999999999995554443332221 1588
Q ss_pred eeEEcCCC-eEEEEeC--CCCEEEEEECCCCcEEEee-cCCccceeecceehhhhhhhhhcCCcccccccccccccccCC
Q 013362 82 HLMKSEDD-NLLIINR--SFETLWIMDLASGEIKEAV-KGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKEL 157 (444)
Q Consensus 82 gL~~d~dG-~LYIADa--gnh~IrkIDl~tG~I~Tia-gG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gi 157 (444)
+++++.++ .+||+|. +++++.++|..++.+..-. -|. .+.|+
T Consensus 120 ~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~----------------------------------~P~~~ 165 (381)
T COG3391 120 GLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN----------------------------------TPTGV 165 (381)
T ss_pred eEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC----------------------------------CcceE
Confidence 99999885 8999999 5899999999988765432 111 01122
Q ss_pred CcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEeeec--cccccCCceeeee-ccce-eeecccccCCcc--cce
Q 013362 158 PYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFS--NFAILGLPYWFAF-PLER-VYAVAGGHQGSW--TDH 231 (444)
Q Consensus 158 p~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~~fs--g~g~lg~P~~l~~-PL~~-v~~~~~~~~g~~--~~~ 231 (444)
+ +...++.+|++|..+++|-.+|.++..+.. ... ..+.+..|+-..+ |-+. +| ..... .-.
T Consensus 166 a-------~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~y-----V~~~~~~~~~ 232 (381)
T COG3391 166 A-------VDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVY-----VANDGSGSNN 232 (381)
T ss_pred E-------ECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEE-----EEeccCCCce
Confidence 2 123567799999999999999988887775 432 3556777766665 2111 22 12222 347
Q ss_pred eeeeecCCCeeeEEEeeeCCCCcc-----cccccccceeeeee---ccceeeeeccccccCccchhhhhhhhhhh
Q 013362 232 IQRCSLLPGRIDIKVNVDIPSDTE-----LVESLQEGCIWRQA---RGTASVVLRAEDVAGSLEKVGVAQLWYDE 298 (444)
Q Consensus 232 i~~v~~~pGri~i~v~v~~P~~~e-----l~~p~~e~ciwrq~---rg~~~~~~~~~~~~~~~~kvg~aq~wyde 298 (444)
+.+++..++.+.-. +.|.+.. .+.|. +=.|+=+ -+....+.++...+.+.-.+|....|+..
T Consensus 233 v~~id~~~~~v~~~---~~~~~~~~~~~v~~~p~--g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~ 302 (381)
T COG3391 233 VLKIDTATGNVTAT---DLPVGSGAPRGVAVDPA--GKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPV 302 (381)
T ss_pred EEEEeCCCceEEEe---ccccccCCCCceeECCC--CCEEEEEecCCCeEEEEeCCCCceeeeecccccccccce
Confidence 88888888877643 2343332 22232 1112211 46677777777776666666666555443
No 7
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.39 E-value=5.1e-07 Score=60.67 Aligned_cols=28 Identities=11% Similarity=0.321 Sum_probs=26.4
Q ss_pred CCCcceeEEcCCCeEEEEeCCCCEEEEE
Q 013362 77 LIFPWHLMKSEDDNLLIINRSFETLWIM 104 (444)
Q Consensus 77 Ln~P~gL~~d~dG~LYIADagnh~IrkI 104 (444)
|+.|+||+++++|+|||||++||+|+++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 6789999999999999999999999986
No 8
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.28 E-value=2.9e-06 Score=97.47 Aligned_cols=152 Identities=9% Similarity=0.076 Sum_probs=100.6
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccC-CcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKN-NSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP 80 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~-~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P 80 (444)
.|..+|++|-.+.|||-|+ |.|-+|+. .+.|..++|.... |- .++-.+. .-.+..+. |-.|
T Consensus 534 WPT~LaV~Pmdnsl~Vld~--nvvlrit~-~~rV~Ii~GrP~h--C~~a~~t~~~---skla~H~t----------l~~~ 595 (1899)
T KOG4659|consen 534 WPTSLAVDPMDNSLLVLDT--NVVLRITV-VHRVRIILGRPTH--CDLANATSSA---SKLADHRT----------LLIQ 595 (1899)
T ss_pred cccceeecCCCCeEEEeec--ceEEEEcc-CccEEEEcCCccc--cccCCCchhh---hhhhhhhh----------hhhh
Confidence 5999999999999999995 99999985 6778899987422 10 0000111 01222333 8889
Q ss_pred ceeEEcCCCeEEEEeCCC---CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCccccccc-ccccccccC
Q 013362 81 WHLMKSEDDNLLIINRSF---ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQ-IDSSCSLKE 156 (444)
Q Consensus 81 ~gL~~d~dG~LYIADagn---h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~-~~~~~~~~G 156 (444)
.+|++..+|.||||.+-. ||||++.. .|+|..+||+- ++|.|..+.+.+-++.. ..+..+
T Consensus 596 r~Iavg~~G~lyvaEsD~rriNrvr~~~t-dg~i~ilaGa~------------S~C~C~~~~~cdcfs~~~~~At~A--- 659 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRINRVRKLST-DGTISILAGAK------------SPCSCDVAACCDCFSLRDVAATQA--- 659 (1899)
T ss_pred hceeecCCceEEEEeccchhhhheEEecc-CceEEEecCCC------------CCCCcccccCCccccccchhhhcc---
Confidence 999999999999999865 67788865 58999998642 23445544444433321 001111
Q ss_pred CCcccccccccc-cCCeEEEEeCCCCeEEEEeCC
Q 013362 157 LPYAGLISSSIA-FQNHILLCDIVGQRIMRLNRE 189 (444)
Q Consensus 157 ip~a~~~Sgla~-~~~~LyIADT~nhRIRkvdl~ 189 (444)
....|++||. ..+++||||..|.|||+|..+
T Consensus 660 --~lnsp~alaVsPdg~v~IAD~gN~rIr~Vs~~ 691 (1899)
T KOG4659|consen 660 --KLNSPYALAVSPDGDVIIADSGNSRIRKVSAR 691 (1899)
T ss_pred --ccCCcceEEECCCCcEEEecCCchhhhhhhhc
Confidence 1112455553 578999999999999998654
No 9
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.28 E-value=1.2e-05 Score=80.98 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=91.7
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEec-cCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVY-PTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP 80 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVA-GtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P 80 (444)
.|.-++-+++| .+++-+...|+|=+.|+.+|+|.|++ |+| .+|
T Consensus 63 ap~dvapapdG-~VWft~qg~gaiGhLdP~tGev~~ypLg~G-----------------------------------a~P 106 (353)
T COG4257 63 APFDVAPAPDG-AVWFTAQGTGAIGHLDPATGEVETYPLGSG-----------------------------------ASP 106 (353)
T ss_pred CccccccCCCC-ceEEecCccccceecCCCCCceEEEecCCC-----------------------------------CCC
Confidence 47788888888 69999999999999999999999986 443 248
Q ss_pred ceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcc
Q 013362 81 WHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYA 160 (444)
Q Consensus 81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a 160 (444)
.+|.+.+||..||+|+++ .|+|+|+++++++++--.... +.+
T Consensus 107 hgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~-------------------------------------a~~ 148 (353)
T COG4257 107 HGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEH-------------------------------------ADA 148 (353)
T ss_pred ceEEECCCCCeeEecCcc-eeEEecCcccceEEeeccccc-------------------------------------CCC
Confidence 899999999999999999 999999999999988632110 000
Q ss_pred cccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEee
Q 013362 161 GLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQ 197 (444)
Q Consensus 161 ~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~~ 197 (444)
.+-+-+.+..++||+.-..+ --=++|+.++.+++|-
T Consensus 149 nlet~vfD~~G~lWFt~q~G-~yGrLdPa~~~i~vfp 184 (353)
T COG4257 149 NLETAVFDPWGNLWFTGQIG-AYGRLDPARNVISVFP 184 (353)
T ss_pred cccceeeCCCccEEEeeccc-cceecCcccCceeeec
Confidence 00011234567788876633 2228999999999983
No 10
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.27 E-value=0.00014 Score=73.29 Aligned_cols=182 Identities=19% Similarity=0.230 Sum_probs=112.5
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCCCe--EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRV--LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF 79 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~--VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~ 79 (444)
||+.+.++++|+.|||+|-++.+|+.+++.... ++-..-. .. ..=..
T Consensus 145 h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~-~~------------------------------~~G~G 193 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI-KV------------------------------PPGSG 193 (345)
T ss_dssp CEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE-EC------------------------------STTSS
T ss_pred cceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc-cc------------------------------ccCCC
Confidence 789999999999999999999999999986543 3321100 00 00345
Q ss_pred cceeEEcCCC-eEEEEeCCCCEEEEEECC--CCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccC
Q 013362 80 PWHLMKSEDD-NLLIINRSFETLWIMDLA--SGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKE 156 (444)
Q Consensus 80 P~gL~~d~dG-~LYIADagnh~IrkIDl~--tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~G 156 (444)
|.+++++++| .+|+++...++|..++.. +|.++.+.. .+. + |.++ .+
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~-~~~---------------~---~~~~-----------~~ 243 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT-IST---------------L---PEGF-----------TG 243 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE-EES---------------C---ETTS-----------CS
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE-eee---------------c---cccc-----------cc
Confidence 8999999985 699999999999999988 676554431 000 0 0000 01
Q ss_pred CCccccccc--ccccCCeEEEEeCCCCeEEEEeC--CCCeEEEeeeccccccCCceeeee-ccceeeecccccCCcccce
Q 013362 157 LPYAGLISS--SIAFQNHILLCDIVGQRIMRLNR--ESGVCSNFQFSNFAILGLPYWFAF-PLERVYAVAGGHQGSWTDH 231 (444)
Q Consensus 157 ip~a~~~Sg--la~~~~~LyIADT~nhRIRkvdl--~tG~vST~~fsg~g~lg~P~~l~~-PL~~v~~~~~~~~g~~~~~ 231 (444)
. ..++. +..+++.||++......|..+++ ++|.++.++.-..+ -..|-.|.+ |-++..-+ +.+..+.
T Consensus 244 ~---~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~V----a~~~s~~ 315 (345)
T PF10282_consen 244 E---NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLYV----ANQDSNT 315 (345)
T ss_dssp S---SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEEE----EETTTTE
T ss_pred c---CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEEE----EecCCCe
Confidence 0 01222 23457789999999999888887 57888777532221 123666665 54433222 3333344
Q ss_pred ee--eeecCCCeeeEEEe-eeCCC
Q 013362 232 IQ--RCSLLPGRIDIKVN-VDIPS 252 (444)
Q Consensus 232 i~--~v~~~pGri~i~v~-v~~P~ 252 (444)
|. +++...|++..... +.+|.
T Consensus 316 v~vf~~d~~tG~l~~~~~~~~~~~ 339 (345)
T PF10282_consen 316 VSVFDIDPDTGKLTPVGSSVPIPS 339 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEEESSS
T ss_pred EEEEEEeCCCCcEEEecccccCCC
Confidence 54 44668898887764 56553
No 11
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.25 E-value=5.4e-06 Score=85.85 Aligned_cols=135 Identities=15% Similarity=0.149 Sum_probs=90.0
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW 81 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~ 81 (444)
||.||+++..++.|||||.+ --+-+|++..|.-+-+++..+. +.+.+.-
T Consensus 116 RPLGl~f~~~ggdL~VaDAY-lGL~~V~p~g~~a~~l~~~~~G------------------------------~~~kf~N 164 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVADAY-LGLLKVGPEGGLAELLADEAEG------------------------------KPFKFLN 164 (376)
T ss_pred CcceEEeccCCCeEEEEecc-eeeEEECCCCCcceeccccccC------------------------------eeeeecC
Confidence 79999999999899999997 4577888887775555554211 1166677
Q ss_pred eeEEcCCCeEEEEeCCC-----------------CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccc
Q 013362 82 HLMKSEDDNLLIINRSF-----------------ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWL 144 (444)
Q Consensus 82 gL~~d~dG~LYIADagn-----------------h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~ 144 (444)
++.++++|.+|+.|++. +|+.++|+.|.+.+.+.
T Consensus 165 ~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLl----------------------------- 215 (376)
T KOG1520|consen 165 DLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLL----------------------------- 215 (376)
T ss_pred ceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhh-----------------------------
Confidence 88899999999999865 33444444333332222
Q ss_pred cccccccccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCc
Q 013362 145 LHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLP 207 (444)
Q Consensus 145 ~~~~~~~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P 207 (444)
+++.|+..++ |..++..+.+|.+-..||+|+-+++..+.|-..=-.|..|+|
T Consensus 216 ----------d~L~F~NGla-LS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~P 267 (376)
T KOG1520|consen 216 ----------DGLYFPNGLA-LSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYP 267 (376)
T ss_pred ----------hccccccccc-CCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCC
Confidence 1222211111 335677899999999999999999888866421112455555
No 12
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.18 E-value=3e-06 Score=56.90 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.9
Q ss_pred CCcceEEEecCCCEEEEEeCCCCeEEEE
Q 013362 1 MRPAASFYHKDDDCLYIVDSENHAIRRA 28 (444)
Q Consensus 1 ~~P~GIa~D~~g~~LYVADTeNHaIRkI 28 (444)
+.|.||+++++| .|||||++||+|++.
T Consensus 2 ~~P~gvav~~~g-~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDG-NIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCC-CEEEEECCCCEEEEC
Confidence 479999999665 899999999999974
No 13
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.14 E-value=0.0001 Score=72.49 Aligned_cols=129 Identities=8% Similarity=0.031 Sum_probs=83.4
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECC-CCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMG-RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP 80 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~-tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P 80 (444)
+|.+|+++++++.||++....+.|..+++. +|.+.+.... . .. ...|
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~--~--------------------~~----------~~~~ 128 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI--I--------------------EG----------LEGC 128 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee--c--------------------cC----------CCcc
Confidence 589999999999999999888999999874 2322211110 0 00 3468
Q ss_pred ceeEEcCCC-eEEEEeCCCCEEEEEECCC-CcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362 81 WHLMKSEDD-NLLIINRSFETLWIMDLAS-GEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP 158 (444)
Q Consensus 81 ~gL~~d~dG-~LYIADagnh~IrkIDl~t-G~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip 158 (444)
.+++++++| .||+++.+.++|+.+|+.+ |.+.....-.... ..+.++.++.
T Consensus 129 ~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~---------------------------~~g~~p~~~~ 181 (330)
T PRK11028 129 HSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT---------------------------VEGAGPRHMV 181 (330)
T ss_pred cEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec---------------------------CCCCCCceEE
Confidence 888888875 6999999999999999976 4443111000000 0001111111
Q ss_pred cccccccccccCCeEEEEeCCCCeEEEEeCC--CCeEEEe
Q 013362 159 YAGLISSSIAFQNHILLCDIVGQRIMRLNRE--SGVCSNF 196 (444)
Q Consensus 159 ~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~--tG~vST~ 196 (444)
+...+..||+++...+.|..++++ +|..+.+
T Consensus 182 -------~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 182 -------FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred -------ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence 234567899999999999999987 4555444
No 14
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.00011 Score=75.57 Aligned_cols=125 Identities=14% Similarity=0.205 Sum_probs=91.3
Q ss_pred CcceEEEecCCCEEEEEeC--CCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362 2 RPAASFYHKDDDCLYIVDS--ENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF 79 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADT--eNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~ 79 (444)
.|++++++++++.+||+|. .|+.|-+||..++.+..-...| ..
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-----------------------------------~~ 161 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-----------------------------------NT 161 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-----------------------------------CC
Confidence 6999999999999999999 5899999998888765542222 14
Q ss_pred cceeEEcCCCe-EEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362 80 PWHLMKSEDDN-LLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP 158 (444)
Q Consensus 80 P~gL~~d~dG~-LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip 158 (444)
|.+++++++|+ +|++|...+.|-.+|..+-.+.+ ....... + ....+.++.
T Consensus 162 P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~----~-----------------------~~~~P~~i~ 213 (381)
T COG3391 162 PTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLV----G-----------------------VGTGPAGIA 213 (381)
T ss_pred cceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccccc----c-----------------------cCCCCceEE
Confidence 67899999987 99999999999999987666654 2110000 0 011111111
Q ss_pred cccccccccccCCeEEEEeCCC--CeEEEEeCCCCeEEEe
Q 013362 159 YAGLISSSIAFQNHILLCDIVG--QRIMRLNRESGVCSNF 196 (444)
Q Consensus 159 ~a~~~Sgla~~~~~LyIADT~n--hRIRkvdl~tG~vST~ 196 (444)
+...++.+|+++..+ .+|.++|..++.+.-.
T Consensus 214 -------v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 214 -------VDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred -------ECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 234567899999998 7999999999988764
No 15
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.08 E-value=0.00012 Score=73.76 Aligned_cols=145 Identities=16% Similarity=0.216 Sum_probs=94.4
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECC--CCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMG--RRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF 79 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~--tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~ 79 (444)
.|..++++++++.+||+...++.|-.+++. +|..+.+.-.... .. +. .. -+.
T Consensus 193 GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~------------~~-~~---~~----------~~~ 246 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL------------PE-GF---TG----------ENA 246 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC------------ET-TS---CS----------SSS
T ss_pred CCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec------------cc-cc---cc----------cCC
Confidence 588999999999999999999999999987 6655443322111 00 00 01 357
Q ss_pred cceeEEcCCC-eEEEEeCCCCEEEEEEC--CCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccC
Q 013362 80 PWHLMKSEDD-NLLIINRSFETLWIMDL--ASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKE 156 (444)
Q Consensus 80 P~gL~~d~dG-~LYIADagnh~IrkIDl--~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~G 156 (444)
|.+|++++|| .||+++++.+.|..+++ .+|.++.+.. .+ +.|. .|.+
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~-~~----~~G~-------------------------~Pr~ 296 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT-VP----TGGK-------------------------FPRH 296 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE-EE----ESSS-------------------------SEEE
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE-Ee----CCCC-------------------------CccE
Confidence 8999999886 59999999999998887 5688875532 00 0010 0111
Q ss_pred CCcccccccccccCCeEEEEeCCCCeEEEE--eCCCCeEEEeeeccccccCCceeee
Q 013362 157 LPYAGLISSSIAFQNHILLCDIVGQRIMRL--NRESGVCSNFQFSNFAILGLPYWFA 211 (444)
Q Consensus 157 ip~a~~~Sgla~~~~~LyIADT~nhRIRkv--dl~tG~vST~~fsg~g~lg~P~~l~ 211 (444)
+. +...++.||++....+.|..+ |.++|.++.+.-. -.+.-|+++.
T Consensus 297 ~~-------~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~--~~~~~p~ci~ 344 (345)
T PF10282_consen 297 FA-------FSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSS--VPIPSPVCIV 344 (345)
T ss_dssp EE-------E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE--EESSSEEEEE
T ss_pred EE-------EeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEeccc--ccCCCCEEEe
Confidence 11 234678899999999998865 5679998876421 2344555543
No 16
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.07 E-value=9.3e-05 Score=74.74 Aligned_cols=174 Identities=13% Similarity=0.110 Sum_probs=115.6
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCc---------cCCcchhhhhcccCcc---cccCccc
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISK---------KNNSLWAWIMEKLGFE---RDNDTKS 69 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~---------~~~~l~g~~~~~~G~a---~~a~~~~ 69 (444)
+|+||..+++| .++|+|++| +|+|+|.++..|+++-=+++... +-|-|| |. +..|.. ..++.-.
T Consensus 105 ~Phgiv~gpdg-~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lW-Ft-~q~G~yGrLdPa~~~i 180 (353)
T COG4257 105 SPHGIVVGPDG-SAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLW-FT-GQIGAYGRLDPARNVI 180 (353)
T ss_pred CCceEEECCCC-CeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEE-Ee-eccccceecCcccCce
Confidence 79999999998 599999999 99999999999998753221100 112233 11 222221 2233335
Q ss_pred cCCCCCCCCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCccccccccc
Q 013362 70 EKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQID 149 (444)
Q Consensus 70 ~~~~~~~Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~ 149 (444)
.+|...+=-.|.||+...+|.+|+|....+.|-+||+.+|.-+.+-- +..+
T Consensus 181 ~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~--P~~~--------------------------- 231 (353)
T COG4257 181 SVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQ--PNAL--------------------------- 231 (353)
T ss_pred eeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecC--CCcc---------------------------
Confidence 67776666779999999999999999999999999999885544432 1110
Q ss_pred ccccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeee-ccceeee
Q 013362 150 SSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAF-PLERVYA 219 (444)
Q Consensus 150 ~~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~-PL~~v~~ 219 (444)
..+. -.+. ...+++++|++.++.++-++|+++..-....+.+.+ .-||...+ -..||+-
T Consensus 232 -~~gs------Rriw--sdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~--arpys~rVD~~grVW~ 291 (353)
T COG4257 232 -KAGS------RRIW--SDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSK--ARPYSMRVDRHGRVWL 291 (353)
T ss_pred -cccc------cccc--cCccCcEEEeccCCceeeEeCcccccceeeeCCCCC--CCcceeeeccCCcEEe
Confidence 0000 0111 356899999999999999999987775555444433 23344333 3566663
No 17
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.01 E-value=9.1e-05 Score=75.03 Aligned_cols=145 Identities=17% Similarity=0.181 Sum_probs=93.8
Q ss_pred cceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCc-----CccCCcchhhhhcccCcc-----ccc--Ccccc
Q 013362 3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGI-----SKKNNSLWAWIMEKLGFE-----RDN--DTKSE 70 (444)
Q Consensus 3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~-----~~~~~~l~g~~~~~~G~a-----~~a--~~~~~ 70 (444)
..|-.|+++++.||++|..+.+|.+.++.+|..+++.=.+.. ..+++-|+.- +.|.. ... ..-.+
T Consensus 27 gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~---~~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 27 GEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIAC---EHGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEE---ccccEEEeccCCceeEEecc
Confidence 346678888889999999999999999998877776522211 1111112210 11111 000 11133
Q ss_pred CCCCCCCCCcceeEEcCCCeEEEEeCCC-----------CEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcC
Q 013362 71 KLDPQSLIFPWHLMKSEDDNLLIINRSF-----------ETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQM 139 (444)
Q Consensus 71 ~~~~~~Ln~P~gL~~d~dG~LYIADagn-----------h~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~ 139 (444)
..+..+++.|-++.++++|.+|+.|.++ ..++++|+. |.+..+..+. +
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~--~------------------ 162 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDD--L------------------ 162 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCc--E------------------
Confidence 4566678999999999999999999982 458888884 4444454220 0
Q ss_pred CcccccccccccccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCC
Q 013362 140 PQDWLLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRES 190 (444)
Q Consensus 140 ~~~~~~~~~~~~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~t 190 (444)
..+.|+++ ..++..||++||..+||.++++.-
T Consensus 163 ------------~~~NGla~-------SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 163 ------------TIPNGLAF-------SPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred ------------EecCceEE-------CCCCCEEEEEeCCCCeEEEEecCc
Confidence 01113333 245668999999999999998763
No 18
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.87 E-value=0.0007 Score=66.62 Aligned_cols=82 Identities=16% Similarity=0.151 Sum_probs=59.1
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCC-CeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGR-RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP 80 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~t-g~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P 80 (444)
+|++++++++++.|||++.+.+.|+.+|+.+ |.+......... ... =..|
T Consensus 127 ~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~-------------------~~~----------g~~p 177 (330)
T PRK11028 127 GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT-------------------TVE----------GAGP 177 (330)
T ss_pred cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee-------------------cCC----------CCCC
Confidence 6899999999999999999999999999864 333211000000 000 1347
Q ss_pred ceeEEcCCC-eEEEEeCCCCEEEEEECC--CCcEE
Q 013362 81 WHLMKSEDD-NLLIINRSFETLWIMDLA--SGEIK 112 (444)
Q Consensus 81 ~gL~~d~dG-~LYIADagnh~IrkIDl~--tG~I~ 112 (444)
.+++++++| .||+++.+.++|+.++.+ +|+++
T Consensus 178 ~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~ 212 (330)
T PRK11028 178 RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE 212 (330)
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE
Confidence 899999885 599999999999999886 45554
No 19
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.85 E-value=0.00052 Score=70.02 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=45.7
Q ss_pred CcceEEEecCCCEEEEEeCCCC------------eEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccc
Q 013362 2 RPAASFYHKDDDCLYIVDSENH------------AIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKS 69 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNH------------aIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~ 69 (444)
+|.+|++|++| +|||++..|. +|.+++-.++ . |.+. +.
T Consensus 15 ~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dg-------d------------------G~~d----~~ 64 (367)
T TIGR02604 15 NPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADG-------D------------------GKYD----KS 64 (367)
T ss_pred CCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCC-------C------------------CCcc----ee
Confidence 69999999988 6999997553 4444432211 1 1110 11
Q ss_pred cCCCCCCCCCcceeEEcCCCeEEEEeCCCCEEEEEE
Q 013362 70 EKLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMD 105 (444)
Q Consensus 70 ~~~~~~~Ln~P~gL~~d~dG~LYIADagnh~IrkID 105 (444)
..|-+. |..|.++++..+| |||++.. +|+++.
T Consensus 65 ~vfa~~-l~~p~Gi~~~~~G-lyV~~~~--~i~~~~ 96 (367)
T TIGR02604 65 NVFAEE-LSMVTGLAVAVGG-VYVATPP--DILFLR 96 (367)
T ss_pred EEeecC-CCCccceeEecCC-EEEeCCC--eEEEEe
Confidence 123222 8899999999878 9999754 699884
No 20
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.67 E-value=0.0032 Score=58.56 Aligned_cols=129 Identities=12% Similarity=0.148 Sum_probs=85.7
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeE-EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP 80 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P 80 (444)
+|.++++++++..||++-...+.|+.+|+.++.+ .++-... . +. ... -..|
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~-~---------------~~--~~~----------~~~~ 209 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI-P---------------GV--HPE----------AVQP 209 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc-c---------------cc--ccc----------cCCc
Confidence 4778889989888888866678899999987754 3332111 0 00 000 2247
Q ss_pred ceeEEcCCCe-EEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362 81 WHLMKSEDDN-LLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY 159 (444)
Q Consensus 81 ~gL~~d~dG~-LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~ 159 (444)
.+++++++|. +|++...+++|+++|+.++++.........+. .+.
T Consensus 210 ~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~---------------------------------~~~- 255 (300)
T TIGR03866 210 VGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVW---------------------------------QLA- 255 (300)
T ss_pred cceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcc---------------------------------eEE-
Confidence 7888888765 69999989999999999988754331000000 000
Q ss_pred ccccccccccCCeEEEEeCCCCeEEEEeCCCCeE-EEeee
Q 013362 160 AGLISSSIAFQNHILLCDIVGQRIMRLNRESGVC-SNFQF 198 (444)
Q Consensus 160 a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~v-ST~~f 198 (444)
+...+..||++......|+.+|++++.+ .+|++
T Consensus 256 ------~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 256 ------FTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred ------ECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 1234567888887788999999999995 77764
No 21
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.60 E-value=0.00082 Score=68.19 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=58.9
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW 81 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~ 81 (444)
.|.||||+++|..||+|||..++|.++++.. . +|...++. .+...+. .=-.|=
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~---~----~g~~~~~~----~~~~~~~----------------~~G~PD 216 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDP---A----TGPIGGRR----GFVDFDE----------------EPGLPD 216 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCc---c----cCccCCcc----eEEEccC----------------CCCCCC
Confidence 4889999999999999999999999999864 1 11110000 0000000 123578
Q ss_pred eeEEcCCCeEEEEeCCC-CEEEEEECCCCcE-EEee
Q 013362 82 HLMKSEDDNLLIINRSF-ETLWIMDLASGEI-KEAV 115 (444)
Q Consensus 82 gL~~d~dG~LYIADagn-h~IrkIDl~tG~I-~Tia 115 (444)
++++|.+|+||++-..+ .+|-+++++ |+. ..+.
T Consensus 217 G~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~ 251 (307)
T COG3386 217 GMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK 251 (307)
T ss_pred ceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE
Confidence 99999999999765555 499999998 654 4443
No 22
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.48 E-value=0.00043 Score=58.71 Aligned_cols=69 Identities=14% Similarity=0.152 Sum_probs=48.7
Q ss_pred eeEEcCC-CeEEEEeC-----------------CCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCccc
Q 013362 82 HLMKSED-DNLLIINR-----------------SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDW 143 (444)
Q Consensus 82 gL~~d~d-G~LYIADa-----------------gnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~ 143 (444)
+|.++.+ |.+|++|+ .+++++++|+.|++++.++.|-.
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~------------------------ 57 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLY------------------------ 57 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEES------------------------
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCC------------------------
Confidence 6778887 99999998 46899999999999998886321
Q ss_pred ccccccccccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCC
Q 013362 144 LLHQIDSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRES 190 (444)
Q Consensus 144 ~~~~~~~~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~t 190 (444)
.+.|++ ++.++..|+||.+..+||.|+-+++
T Consensus 58 ---------fpNGVa-------ls~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 58 ---------FPNGVA-------LSPDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp ---------SEEEEE-------E-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred ---------ccCeEE-------EcCCCCEEEEEeccCceEEEEEEeC
Confidence 011222 2345668999999999999998763
No 23
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.41 E-value=0.0016 Score=66.49 Aligned_cols=30 Identities=7% Similarity=0.022 Sum_probs=26.8
Q ss_pred CCCcceeEEcCCCeEEEEeCCCCEEEEEEC
Q 013362 77 LIFPWHLMKSEDDNLLIINRSFETLWIMDL 106 (444)
Q Consensus 77 Ln~P~gL~~d~dG~LYIADagnh~IrkIDl 106 (444)
++.|++++++++|+||++|..++...+++.
T Consensus 183 ~rnp~Gl~~d~~G~l~~tdn~~~~~~~i~~ 212 (367)
T TIGR02604 183 FQNPYGHSVDSWGDVFFCDNDDPPLCRVTP 212 (367)
T ss_pred cCCCccceECCCCCEEEEccCCCceeEEcc
Confidence 899999999999999999998888777764
No 24
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.36 E-value=0.013 Score=54.38 Aligned_cols=75 Identities=20% Similarity=0.299 Sum_probs=54.3
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW 81 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~ 81 (444)
+|.++++++++..||++...++.|+.+|+.++.+......+ ..|.
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-----------------------------------~~~~ 76 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-----------------------------------PDPE 76 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-----------------------------------CCcc
Confidence 47789999998889999888999999998776543211110 1134
Q ss_pred eeEEcCCC-eEEEEeCCCCEEEEEECCCCcE
Q 013362 82 HLMKSEDD-NLLIINRSFETLWIMDLASGEI 111 (444)
Q Consensus 82 gL~~d~dG-~LYIADagnh~IrkIDl~tG~I 111 (444)
.++++++| .||++....++|+.+|+.++..
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~ 107 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKV 107 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeE
Confidence 56676665 4888888788999999987653
No 25
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.27 E-value=0.0014 Score=55.69 Aligned_cols=68 Identities=19% Similarity=0.209 Sum_probs=52.0
Q ss_pred eEEEecCCCEEEEEeCC-----------------CCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCc
Q 013362 5 ASFYHKDDDCLYIVDSE-----------------NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDT 67 (444)
Q Consensus 5 GIa~D~~g~~LYVADTe-----------------NHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~ 67 (444)
+++++++++.+||.|+. +.++=+.|+.++.+++++..
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-------------------------- 55 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-------------------------- 55 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE--------------------------
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC--------------------------
Confidence 67888885689999984 35677888888877777532
Q ss_pred cccCCCCCCCCCcceeEEcCCCe-EEEEeCCCCEEEEEECC
Q 013362 68 KSEKLDPQSLIFPWHLMKSEDDN-LLIINRSFETLWIMDLA 107 (444)
Q Consensus 68 ~~~~~~~~~Ln~P~gL~~d~dG~-LYIADagnh~IrkIDl~ 107 (444)
|.+|-||+++.|+. |+||.++.+||+|+-+.
T Consensus 56 ---------L~fpNGVals~d~~~vlv~Et~~~Ri~rywl~ 87 (89)
T PF03088_consen 56 ---------LYFPNGVALSPDESFVLVAETGRYRILRYWLK 87 (89)
T ss_dssp ---------ESSEEEEEE-TTSSEEEEEEGGGTEEEEEESS
T ss_pred ---------CCccCeEEEcCCCCEEEEEeccCceEEEEEEe
Confidence 88999999999865 99999999999999774
No 26
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.23 E-value=0.0014 Score=65.39 Aligned_cols=98 Identities=18% Similarity=0.211 Sum_probs=69.8
Q ss_pred cceEEEecCCCEEEEEeCCCCeEEEEE--CCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362 3 PAASFYHKDDDCLYIVDSENHAIRRAD--MGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP 80 (444)
Q Consensus 3 P~GIa~D~~g~~LYVADTeNHaIRkID--l~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P 80 (444)
|.||+||.+-...|+-||-|+.|...| ..+|.++- . ..++ . -.|++-| .=..|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn---------r-~~i~--d----------lrk~~~~---e~~~P 214 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN---------R-KVIF--D----------LRKSQPF---ESLEP 214 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccC---------c-ceeE--E----------eccCCCc---CCCCC
Confidence 689999988899999999999996555 66665431 1 0111 0 0111111 13469
Q ss_pred ceeEEcCCCeEEEEeCCCCEEEEEECCCCcE-EEeecCCccceeec
Q 013362 81 WHLMKSEDDNLLIINRSFETLWIMDLASGEI-KEAVKGFSKVLEIC 125 (444)
Q Consensus 81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~I-~TiagG~~~~~~~~ 125 (444)
-|+++|.+|+||||--+..+|.|+|+.||++ .++--.+++++..|
T Consensus 215 DGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 215 DGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred CcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 9999999999999999999999999999985 45544566655433
No 27
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.87 E-value=0.096 Score=48.28 Aligned_cols=128 Identities=10% Similarity=0.061 Sum_probs=77.4
Q ss_pred CcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362 79 FPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP 158 (444)
Q Consensus 79 ~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip 158 (444)
.|....+..++.+|+++ ..+.|..+|+.||++.--..- +... ..+
T Consensus 27 ~~~~~~~~~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~-~~~~---------------------------------~~~ 71 (238)
T PF13360_consen 27 GPVATAVPDGGRVYVAS-GDGNLYALDAKTGKVLWRFDL-PGPI---------------------------------SGA 71 (238)
T ss_dssp SEEETEEEETTEEEEEE-TTSEEEEEETTTSEEEEEEEC-SSCG---------------------------------GSG
T ss_pred CccceEEEeCCEEEEEc-CCCEEEEEECCCCCEEEEeec-cccc---------------------------------cce
Confidence 33433453458999994 899999999999986422211 1000 000
Q ss_pred cccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEe-eeccccccCCceeeeeccceeeecccccCCcccceeeeeec
Q 013362 159 YAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNF-QFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSL 237 (444)
Q Consensus 159 ~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~-~fsg~g~lg~P~~l~~PL~~v~~~~~~~~g~~~~~i~~v~~ 237 (444)
....++.||++...+ +|+.+|..+|.+.-- ........+ +..++...+.....+.+....+|..+++
T Consensus 72 -------~~~~~~~v~v~~~~~-~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 72 -------PVVDGGRVYVGTSDG-SLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDP 139 (238)
T ss_dssp -------EEEETTEEEEEETTS-EEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred -------eeeccccccccccee-eeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEec
Confidence 134578899998666 999999999988442 222211111 2223323333333345555788999999
Q ss_pred CCCeeeEEEeeeCCCC
Q 013362 238 LPGRIDIKVNVDIPSD 253 (444)
Q Consensus 238 ~pGri~i~v~v~~P~~ 253 (444)
..|++.-+..+..|.+
T Consensus 140 ~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 140 KTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TTTEEEEEEESSTT-S
T ss_pred CCCcEEEEeecCCCCC
Confidence 9999988887776653
No 28
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.55 E-value=0.016 Score=60.14 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=60.8
Q ss_pred Ccce---EEEecCCCEEEEEe---------CCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccc
Q 013362 2 RPAA---SFYHKDDDCLYIVD---------SENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKS 69 (444)
Q Consensus 2 ~P~G---Ia~D~~g~~LYVAD---------TeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~ 69 (444)
+|-| ++++++++.|||+- ...+.|-.||+.++.+......|.
T Consensus 246 rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~-------------------------- 299 (352)
T TIGR02658 246 RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH-------------------------- 299 (352)
T ss_pred CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC--------------------------
Confidence 4555 99999999999953 222589999999987766544431
Q ss_pred cCCCCCCCCCcceeEEcCCC--eEEEEeCCCCEEEEEECCCCc-EEEe
Q 013362 70 EKLDPQSLIFPWHLMKSEDD--NLLIINRSFETLWIMDLASGE-IKEA 114 (444)
Q Consensus 70 ~~~~~~~Ln~P~gL~~d~dG--~LYIADagnh~IrkIDl~tG~-I~Ti 114 (444)
.||+|+++.|| .||+++..++.|-.||..+++ +.++
T Consensus 300 ---------~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 300 ---------EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ---------ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 37899999884 589999999999999999994 5555
No 29
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.54 E-value=0.065 Score=53.88 Aligned_cols=149 Identities=16% Similarity=0.146 Sum_probs=79.3
Q ss_pred ceEEEecCCCEEEEEeC--CCCeEEEEECCCCeEEEecc-------CCCcCccCCcchhhhhcccCcc--ccc--Ccccc
Q 013362 4 AASFYHKDDDCLYIVDS--ENHAIRRADMGRRVLETVYP-------TSGISKKNNSLWAWIMEKLGFE--RDN--DTKSE 70 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADT--eNHaIRkIDl~tg~VtTVAG-------tG~~~~~~~~l~g~~~~~~G~a--~~a--~~~~~ 70 (444)
||+.+..+| .||..-- +.+.||++|+.+|.+.--.- .|-. .-++.||--. =+.|.+ -+. -....
T Consensus 48 QGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit-~~~d~l~qLT-Wk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 48 QGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGIT-ILGDKLYQLT-WKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEE-EETTEEEEEE-SSSSEEEEEETTTTEEEE
T ss_pred ccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEE-EECCEEEEEE-ecCCeEEEEccccceEEE
Confidence 799986455 7999876 45599999999997753221 1110 0111222100 011111 000 00111
Q ss_pred CCCCCCCCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEE-EeecCCccceeecceehhhhhhhhhcCCccccccccc
Q 013362 71 KLDPQSLIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIK-EAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQID 149 (444)
Q Consensus 71 ~~~~~~Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~-TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~ 149 (444)
.|.= -.+.|||+.++ ..||++| |+++|+.+|+.+-++. ++-= ...|..+.
T Consensus 125 ~~~y--~~EGWGLt~dg-~~Li~SD-GS~~L~~~dP~~f~~~~~i~V------~~~g~pv~------------------- 175 (264)
T PF05096_consen 125 TFPY--PGEGWGLTSDG-KRLIMSD-GSSRLYFLDPETFKEVRTIQV------TDNGRPVS------------------- 175 (264)
T ss_dssp EEE---SSS--EEEECS-SCEEEE--SSSEEEEE-TTT-SEEEEEE-------EETTEE---------------------
T ss_pred EEec--CCcceEEEcCC-CEEEEEC-CccceEEECCcccceEEEEEE------EECCEECC-------------------
Confidence 1100 14789999887 6899998 6899999999876443 2220 00111110
Q ss_pred ccccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEe
Q 013362 150 SSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNF 196 (444)
Q Consensus 150 ~~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~ 196 (444)
.+.-|-..++.||--==...+|.+||+.||.|..+
T Consensus 176 ------------~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 176 ------------NLNELEYINGKIYANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp -------------EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEE
T ss_pred ------------CcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEE
Confidence 01122334677777777889999999999999774
No 30
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.51 E-value=0.052 Score=56.41 Aligned_cols=120 Identities=11% Similarity=0.117 Sum_probs=79.3
Q ss_pred CCCEEEEEeCC----CCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEc
Q 013362 11 DDDCLYIVDSE----NHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKS 86 (444)
Q Consensus 11 ~g~~LYVADTe----NHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d 86 (444)
++..+||.|.. .++|-.||..++.|.--...|. .|.++ ++
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~-----------------------------------~P~~~-~s 54 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGF-----------------------------------LPNPV-VA 54 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccC-----------------------------------CCcee-EC
Confidence 45689999998 3899999998886543222331 24454 55
Q ss_pred CC-CeEEEEeC---------CCCEEEEEECCCCcEE-Eee-cCCccceeecceehhhhhhhhhcCCcccccccccccccc
Q 013362 87 ED-DNLLIINR---------SFETLWIMDLASGEIK-EAV-KGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSL 154 (444)
Q Consensus 87 ~d-G~LYIADa---------gnh~IrkIDl~tG~I~-Tia-gG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~ 154 (444)
+| ..||||.+ ..+.|..||++|+++. ++- ++.++.. .| ..
T Consensus 55 pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~--~~-------------------------~~- 106 (352)
T TIGR02658 55 SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL--VG-------------------------TY- 106 (352)
T ss_pred CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh--cc-------------------------Cc-
Confidence 55 57999999 8999999999998754 333 2222211 00 00
Q ss_pred cCCCcccccccccccCCeEEEEeCC-CCeEEEEeCCCCeEE-Eeeecc
Q 013362 155 KELPYAGLISSSIAFQNHILLCDIV-GQRIMRLNRESGVCS-NFQFSN 200 (444)
Q Consensus 155 ~Gip~a~~~Sgla~~~~~LyIADT~-nhRIRkvdl~tG~vS-T~~fsg 200 (444)
|. ...+..++..|||++-. .+.|-.||+.++.+- +|...+
T Consensus 107 ---~~---~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 107 ---PW---MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD 148 (352)
T ss_pred ---cc---eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC
Confidence 00 11234567789999965 999999999999874 465443
No 31
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=96.36 E-value=0.0086 Score=41.52 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=28.7
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCC
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGR 32 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~t 32 (444)
.|.|+|+|+.++.||.+|+..+.|+++++..
T Consensus 10 ~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 10 HPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 6899999999999999999999999999853
No 32
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.13 E-value=0.3 Score=50.83 Aligned_cols=146 Identities=14% Similarity=0.246 Sum_probs=90.7
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCC--CeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGR--RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF 79 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~t--g~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~ 79 (444)
-|.-|+|+|.+...|+.---|+.|-...... |.++.+---.... . +|. |.. .
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP---~---dF~----g~~----------------~ 245 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP---E---DFT----GTN----------------W 245 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc---c---ccC----CCC----------------c
Confidence 3778999999999999999999988776654 5555443221110 0 111 111 1
Q ss_pred cceeEEcCCCe-EEEEeCCCCEEEE--EECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccC
Q 013362 80 PWHLMKSEDDN-LLIINRSFETLWI--MDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKE 156 (444)
Q Consensus 80 P~gL~~d~dG~-LYIADagnh~Irk--IDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~G 156 (444)
--+|.++.+|. ||++|++-+.|+. +|+.+|+++.+.- .+ +.|+ .|.+
T Consensus 246 ~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~-~~----teg~-------------------------~PR~ 295 (346)
T COG2706 246 AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI-TP----TEGQ-------------------------FPRD 295 (346)
T ss_pred eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE-ec----cCCc-------------------------CCcc
Confidence 12566777765 9999999999875 5777888766552 11 1111 1111
Q ss_pred CCcccccccccccCCeEEEE--eCCCCeEEEEeCCCCeEEEeeeccccccCCceeeee
Q 013362 157 LPYAGLISSSIAFQNHILLC--DIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAF 212 (444)
Q Consensus 157 ip~a~~~Sgla~~~~~LyIA--DT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~ 212 (444)
+- ++..++.|++| |+.+=.|.++|.+||.++.++ ..-....|+|+.+
T Consensus 296 F~-------i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~--~~~~~p~Pvcv~f 344 (346)
T COG2706 296 FN-------INPSGRFLIAANQKSDNITVFERDKETGRLTLLG--RYAVVPEPVCVKF 344 (346)
T ss_pred ce-------eCCCCCEEEEEccCCCcEEEEEEcCCCceEEecc--cccCCCCcEEEEE
Confidence 11 23346677777 666777788999999998863 2223455666553
No 33
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.08 E-value=0.82 Score=42.10 Aligned_cols=123 Identities=12% Similarity=0.068 Sum_probs=64.4
Q ss_pred CCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeec-CCccceeecceehhhhhhhhhcCCccccccccccccccc
Q 013362 77 LIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVK-GFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLK 155 (444)
Q Consensus 77 Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tiag-G~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~ 155 (444)
+..+....+++ +.+|++.. +..|+.+|+.+|.+.--.. +.+....-+ + ..
T Consensus 112 ~~~~~~~~~~~-~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~--------~------------------~~- 162 (238)
T PF13360_consen 112 VRSSSSPAVDG-DRLYVGTS-SGKLVALDPKTGKLLWKYPVGEPRGSSPI--------S------------------SF- 162 (238)
T ss_dssp TB--SEEEEET-TEEEEEET-CSEEEEEETTTTEEEEEEESSTT-SS--E--------E------------------EE-
T ss_pred cccccCceEec-CEEEEEec-cCcEEEEecCCCcEEEEeecCCCCCCcce--------e------------------ee-
Confidence 44555666664 67777776 8899999999998743221 111100000 0 00
Q ss_pred CCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecccccCCcccceeeee
Q 013362 156 ELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRC 235 (444)
Q Consensus 156 Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~~~~~g~~~~~i~~v 235 (444)
....+.+...++.+|++...+. +..+|+.+|... .... .+. ++.+ | ..+.+..+..+...++..+
T Consensus 163 ----~~~~~~~~~~~~~v~~~~~~g~-~~~~d~~tg~~~-w~~~-~~~---~~~~--~---~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 163 ----SDINGSPVISDGRVYVSSGDGR-VVAVDLATGEKL-WSKP-ISG---IYSL--P---SVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp ----TTEEEEEECCTTEEEEECCTSS-EEEEETTTTEEE-EEEC-SS----ECEC--E---ECCCTEEEEEETTTEEEEE
T ss_pred ----cccccceEEECCEEEEEcCCCe-EEEEECCCCCEE-EEec-CCC---ccCC--c---eeeCCEEEEEeCCCEEEEE
Confidence 0001112223568999987776 666699999854 3222 111 1110 1 1122222333346788888
Q ss_pred ecCCCeee
Q 013362 236 SLLPGRID 243 (444)
Q Consensus 236 ~~~pGri~ 243 (444)
|+.+|++.
T Consensus 228 d~~tG~~~ 235 (238)
T PF13360_consen 228 DLKTGKVV 235 (238)
T ss_dssp ETTTTEEE
T ss_pred ECCCCCEE
Confidence 99999765
No 34
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=95.99 E-value=0.39 Score=49.78 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=51.4
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH 82 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g 82 (444)
.++++.++|..+||+.. ...|.+||+.++. |.+|. .| ..|.+
T Consensus 40 ~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~-~G-----------------------------------~~~~~ 82 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATIK-VG-----------------------------------GNPRG 82 (369)
T ss_dssp EEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE--S-----------------------------------SEEEE
T ss_pred eEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEEe-cC-----------------------------------CCcce
Confidence 45778888999999975 5789999998874 44442 21 12578
Q ss_pred eEEcCCC-eEEEEeCCCCEEEEEECCCCcE-EEe
Q 013362 83 LMKSEDD-NLLIINRSFETLWIMDLASGEI-KEA 114 (444)
Q Consensus 83 L~~d~dG-~LYIADagnh~IrkIDl~tG~I-~Ti 114 (444)
++++.|| .+|+++...+++..+|..|.++ .++
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeec
Confidence 8888876 5999999999999999988764 444
No 35
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.85 E-value=0.093 Score=53.26 Aligned_cols=94 Identities=11% Similarity=0.104 Sum_probs=51.2
Q ss_pred CCcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhccc-----Cc-cc----ccCcccc
Q 013362 1 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKL-----GF-ER----DNDTKSE 70 (444)
Q Consensus 1 ~~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~-----G~-a~----~a~~~~~ 70 (444)
|+|+|+++|+..+.||++|-+....-.|+. ..+|. .. ||-.-.. |. .. ......|
T Consensus 181 RN~~~~~~d~~tg~l~~~d~G~~~~dein~------i~~G~-nY--------GWP~~~~~~~~~~~~~~~~~~~~~~~~P 245 (331)
T PF07995_consen 181 RNPFGLAFDPNTGRLWAADNGPDGWDEINR------IEPGG-NY--------GWPYCEGGPKYSGPPIGDAPSCPGFVPP 245 (331)
T ss_dssp SEEEEEEEETTTTEEEEEEE-SSSSEEEEE------E-TT--B----------TTTBSSSCSTTSS-ECTGSS-TTS---
T ss_pred CccccEEEECCCCcEEEEccCCCCCcEEEE------eccCC-cC--------CCCCCcCCCCCCCCccccccCCCCcCcc
Confidence 679999999995589999988766644432 12332 11 2221110 11 00 0010112
Q ss_pred CCCCCCCCCcceeEEcC-------CCeEEEEeCCCCEEEEEECCCC
Q 013362 71 KLDPQSLIFPWHLMKSE-------DDNLLIINRSFETLWIMDLASG 109 (444)
Q Consensus 71 ~~~~~~Ln~P~gL~~d~-------dG~LYIADagnh~IrkIDl~tG 109 (444)
.+.-..=.+|.++.+.. .|.++|++.+.++|+++.++++
T Consensus 246 ~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~ 291 (331)
T PF07995_consen 246 VFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDED 291 (331)
T ss_dssp SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETT
T ss_pred ceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecC
Confidence 11111115688888752 3789999999999999998755
No 36
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=95.79 E-value=0.12 Score=58.78 Aligned_cols=185 Identities=16% Similarity=0.145 Sum_probs=105.1
Q ss_pred cceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362 3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH 82 (444)
Q Consensus 3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g 82 (444)
|.||.||-.+..+|-.|...|.||+..|..+.=+|+.-. . |.+|-|
T Consensus 1027 iVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~------------------------~----------L~SPEG 1072 (1289)
T KOG1214|consen 1027 IVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNS------------------------G----------LISPEG 1072 (1289)
T ss_pred eeeeecccccceEEEeecCCCccccccccCCCCceeecc------------------------c----------CCCccc
Confidence 679999999999999999999999999864444443211 1 889999
Q ss_pred eEEcCC-CeEEEEeCCCCEEEEEECCCCcEEEeec-CC--cc--ceeec-ceehhhhhhhhhcCCccccccc-ccccccc
Q 013362 83 LMKSED-DNLLIINRSFETLWIMDLASGEIKEAVK-GF--SK--VLEIC-GVLVMEKVFLLKQMPQDWLLHQ-IDSSCSL 154 (444)
Q Consensus 83 L~~d~d-G~LYIADagnh~IrkIDl~tG~I~Tiag-G~--~~--~~~~~-G~li~~~~a~l~~~~~~~~~~~-~~~~~~~ 154 (444)
|++|-- -++|.+|+.+.+|-.--|+..+-+.+.. +. ++ .++.. |.|+. .+|.-.. .....++
T Consensus 1073 iAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYw----------tDWnRenPkIets~m 1142 (1289)
T KOG1214|consen 1073 IAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYW----------TDWNRENPKIETSSM 1142 (1289)
T ss_pred eeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceee----------ccccccCCcceeecc
Confidence 999854 6899999999999887775333333331 11 11 11111 22221 2443322 1111222
Q ss_pred cCCC-------cccccccccc--cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecc-ccc
Q 013362 155 KELP-------YAGLISSSIA--FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVA-GGH 224 (444)
Q Consensus 155 ~Gip-------~a~~~Sgla~--~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~-~~~ 224 (444)
+|-- ...+|.||+- +...|--+|..+||.--+..+.---.++ |+| |+.|+.++...- .++
T Consensus 1143 DG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i-~~~---------LqYPF~itsy~~~fY~ 1212 (1289)
T KOG1214|consen 1143 DGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVI-QNN---------LQYPFSITSYADHFYH 1212 (1289)
T ss_pred CCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhh-hhc---------ccCceeeeecccccee
Confidence 2200 0123455543 3456888899999998887763333332 233 333444433222 333
Q ss_pred CCcccceeeeeecCCCe
Q 013362 225 QGSWTDHIQRCSLLPGR 241 (444)
Q Consensus 225 ~g~~~~~i~~v~~~pGr 241 (444)
.|=...+|..|++..++
T Consensus 1213 TDWk~n~vvsv~~~~~~ 1229 (1289)
T KOG1214|consen 1213 TDWKRNGVVSVNKHSGQ 1229 (1289)
T ss_pred eccccCceEEeeccccc
Confidence 44444555555444443
No 37
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.69 E-value=0.062 Score=53.27 Aligned_cols=76 Identities=20% Similarity=0.296 Sum_probs=47.1
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW 81 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~ 81 (444)
.|+|+++|+..+.|||-..++++|-.+|..-+.+..+.=.+.. .|+.. . +..|-
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~--------------~gl~~--~----------~~QpE 225 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGF--------------HGLSK--D----------IPQPE 225 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTG--------------GG-SS---------------SEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcc--------------cCccc--c----------cCCcc
Confidence 6899999999999999999999999999655555655322101 12211 2 88899
Q ss_pred eeEEcCCCeEEEEeCCCCEEEEE
Q 013362 82 HLMKSEDDNLLIINRSFETLWIM 104 (444)
Q Consensus 82 gL~~d~dG~LYIADagnh~IrkI 104 (444)
||+++++|+|||+.--| ...++
T Consensus 226 GIa~d~~G~LYIvsEpN-lfy~f 247 (248)
T PF06977_consen 226 GIAFDPDGNLYIVSEPN-LFYRF 247 (248)
T ss_dssp EEEE-TT--EEEEETTT-EEEEE
T ss_pred EEEECCCCCEEEEcCCc-eEEEe
Confidence 99999999999998644 55544
No 38
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=95.68 E-value=0.36 Score=48.46 Aligned_cols=85 Identities=16% Similarity=0.100 Sum_probs=58.6
Q ss_pred cceEEEecCCCEEEEEeCCC------------CeEEEEECCCCeE-EEec-cCCCcCccCCcchhhhhcccCcccccCcc
Q 013362 3 PAASFYHKDDDCLYIVDSEN------------HAIRRADMGRRVL-ETVY-PTSGISKKNNSLWAWIMEKLGFERDNDTK 68 (444)
Q Consensus 3 P~GIa~D~~g~~LYVADTeN------------HaIRkIDl~tg~V-tTVA-GtG~~~~~~~~l~g~~~~~~G~a~~a~~~ 68 (444)
.+++.+|..+ .|+|.|++. -+|-.+|+.++.+ .++- +.... + +
T Consensus 3 V~~v~iD~~~-rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~-~-~-------------------- 59 (287)
T PF03022_consen 3 VQRVQIDECG-RLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIA-P-P-------------------- 59 (287)
T ss_dssp EEEEEE-TTS-EEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS---T--------------------
T ss_pred ccEEEEcCCC-CEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHc-c-c--------------------
Confidence 5789999776 899999985 5899999998755 4432 21111 0 0
Q ss_pred ccCCCCCCCCCcceeEEcCC------CeEEEEeCCCCEEEEEECCCCcEEEeecCC
Q 013362 69 SEKLDPQSLIFPWHLMKSED------DNLLIINRSFETLWIMDLASGEIKEAVKGF 118 (444)
Q Consensus 69 ~~~~~~~~Ln~P~gL~~d~d------G~LYIADagnh~IrkIDl~tG~I~TiagG~ 118 (444)
-.+-.++++|.. +..||+|++...|-++|+.+|....+..+.
T Consensus 60 --------~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~ 107 (287)
T PF03022_consen 60 --------DSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNS 107 (287)
T ss_dssp --------CGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCG
T ss_pred --------ccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCC
Confidence 112235666652 579999999999999999999998887543
No 39
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=95.54 E-value=0.11 Score=56.70 Aligned_cols=83 Identities=23% Similarity=0.208 Sum_probs=52.6
Q ss_pred CCcceEEEecCCCEEEEEeCCCC-------------------eEEEEECCCC-------eEEEeccCCCcCccCCcchhh
Q 013362 1 MRPAASFYHKDDDCLYIVDSENH-------------------AIRRADMGRR-------VLETVYPTSGISKKNNSLWAW 54 (444)
Q Consensus 1 ~~P~GIa~D~~g~~LYVADTeNH-------------------aIRkIDl~tg-------~VtTVAGtG~~~~~~~~l~g~ 54 (444)
.||-||++++..+.||||-|+|. .|-+++...+ +.+.++-.|......
T Consensus 350 ~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~------ 423 (524)
T PF05787_consen 350 DRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDAS------ 423 (524)
T ss_pred cCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccc------
Confidence 48999999999889999999988 5666665544 443333222110000
Q ss_pred hhcccCcccccCccccCCCCCCCCCcceeEEcCCCeEEEE-eCCCCE
Q 013362 55 IMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLII-NRSFET 100 (444)
Q Consensus 55 ~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG~LYIA-Dagnh~ 100 (444)
. ......+...|.+|=.|+++++|+|||+ |.++++
T Consensus 424 ---~--------~~~~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~ 459 (524)
T PF05787_consen 424 ---G--------NGSNKCDDNGFASPDNLAFDPDGNLWIQEDGGGSN 459 (524)
T ss_pred ---c--------cccCcccCCCcCCCCceEECCCCCEEEEeCCCCCC
Confidence 0 0001112334999999999999999997 444444
No 40
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.47 E-value=0.71 Score=45.86 Aligned_cols=184 Identities=15% Similarity=0.199 Sum_probs=95.7
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW 81 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~ 81 (444)
.++||+|+++.+.||.+-=+...|-.+++....+.++.=.| +.-|-
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g----------------------------------~~D~E 68 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDG----------------------------------FGDYE 68 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-----------------------------------SSEE
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCC----------------------------------CCCce
Confidence 47999999998899999888999999997655555554322 22356
Q ss_pred eeEEcCCCeEEEEeCCCCEEEEEECC--CCcE-----EEeecCCc----cceeecce-ehhhhhhhh-hcCCcccccccc
Q 013362 82 HLMKSEDDNLLIINRSFETLWIMDLA--SGEI-----KEAVKGFS----KVLEICGV-LVMEKVFLL-KQMPQDWLLHQI 148 (444)
Q Consensus 82 gL~~d~dG~LYIADagnh~IrkIDl~--tG~I-----~TiagG~~----~~~~~~G~-li~~~~a~l-~~~~~~~~~~~~ 148 (444)
+|++.++|.+.|++-..+++..++.. +..+ +.+.-|.. +..++-+. ....++-.. ++.|...+.-+.
T Consensus 69 gI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 69 GITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp EEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred eEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 88998888999999889999988872 3332 22221111 11111000 000000001 112322111111
Q ss_pred c-ccccc-----cCCC----cccccccccc--cCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccce
Q 013362 149 D-SSCSL-----KELP----YAGLISSSIA--FQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLER 216 (444)
Q Consensus 149 ~-~~~~~-----~Gip----~a~~~Sgla~--~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~ 216 (444)
. ..... .+.+ +..-+|+++. ..++|||-..++++|..+|.++..++.+.+.. |..|++-.+..|=++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~-g~~gl~~~~~QpEGI 227 (248)
T PF06977_consen 149 FPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDR-GFHGLSKDIPQPEGI 227 (248)
T ss_dssp TT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-ST-TGGG-SS---SEEEE
T ss_pred ccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCC-cccCcccccCCccEE
Confidence 0 00000 0011 1223676654 45689999999999999998777778776544 566778888888777
Q ss_pred eeec
Q 013362 217 VYAV 220 (444)
Q Consensus 217 v~~~ 220 (444)
+++.
T Consensus 228 a~d~ 231 (248)
T PF06977_consen 228 AFDP 231 (248)
T ss_dssp EE-T
T ss_pred EECC
Confidence 7654
No 41
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=95.24 E-value=0.11 Score=53.63 Aligned_cols=98 Identities=18% Similarity=0.292 Sum_probs=64.2
Q ss_pred CCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEee--cCCccceeecceehhhhhhhhhcCCcccccccccccccc
Q 013362 77 LIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAV--KGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSL 154 (444)
Q Consensus 77 Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tia--gG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~ 154 (444)
|..|.+-.+.+ |.||++|.+.+.+.++|+++|...+++ .|.++.+.-.|.+..-..+ +......+
T Consensus 202 LsmPhSPRWhd-grLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~G~llvVgmS------------k~R~~~~f 268 (335)
T TIGR03032 202 LSMPHSPRWYQ-GKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFAGDFAFVGLS------------KLRESRVF 268 (335)
T ss_pred ccCCcCCcEeC-CeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcccceeCCEEEEEec------------cccCCCCc
Confidence 77888888887 999999999999999999999999888 3677666545544321111 11123344
Q ss_pred cCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeE-EEeeecc
Q 013362 155 KELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVC-SNFQFSN 200 (444)
Q Consensus 155 ~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~v-ST~~fsg 200 (444)
.|+|-.+... ...--|..||+.||.+ -.+.|.|
T Consensus 269 ~glpl~~~l~-------------~~~CGv~vidl~tG~vv~~l~feg 302 (335)
T TIGR03032 269 GGLPIEERLD-------------ALGCGVAVIDLNSGDVVHWLRFEG 302 (335)
T ss_pred CCCchhhhhh-------------hhcccEEEEECCCCCEEEEEEeCC
Confidence 5666422111 1124577888888884 5556655
No 42
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.11 E-value=0.84 Score=46.26 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=28.6
Q ss_pred CcceeEEcCCCeEEEEeCCC------CEEEEEECCCCcE
Q 013362 79 FPWHLMKSEDDNLLIINRSF------ETLWIMDLASGEI 111 (444)
Q Consensus 79 ~P~gL~~d~dG~LYIADagn------h~IrkIDl~tG~I 111 (444)
-|-+|++..+|.+||++-+. ++|++++++ |.+
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~ 123 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRV 123 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-Ccc
Confidence 67799997779999999999 999999987 765
No 43
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.03 E-value=0.32 Score=50.25 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=36.4
Q ss_pred CCCCCcceeEEcC------CCeEEEEeCCCCEEEEEECCCCc-EEEeecCCcc
Q 013362 75 QSLIFPWHLMKSE------DDNLLIINRSFETLWIMDLASGE-IKEAVKGFSK 120 (444)
Q Consensus 75 ~~Ln~P~gL~~d~------dG~LYIADagnh~IrkIDl~tG~-I~TiagG~~~ 120 (444)
..||+||+|++.+ .|.|+|.+-+..+|-.+|+.+|. +-.+......
T Consensus 241 g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~ 293 (336)
T TIGR03118 241 GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNH 293 (336)
T ss_pred CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCC
Confidence 3499999999954 38999999999999999999886 4455443333
No 44
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=94.84 E-value=3.7 Score=43.03 Aligned_cols=177 Identities=14% Similarity=0.116 Sum_probs=106.4
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW 81 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~ 81 (444)
|++-.-++|+++.|.++|-+.-+|...++..|..+-.... .. +.=..|+
T Consensus 146 h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~-~v------------------------------~~G~GPR 194 (346)
T COG2706 146 HVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA-EV------------------------------KPGAGPR 194 (346)
T ss_pred ccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccc-cc------------------------------CCCCCcc
Confidence 3566677889999999999999999999987755432211 00 0123488
Q ss_pred eeEEcCCC-eEEEEeCCCCEEEEEECCC--CcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362 82 HLMKSEDD-NLLIINRSFETLWIMDLAS--GEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP 158 (444)
Q Consensus 82 gL~~d~dG-~LYIADagnh~IrkIDl~t--G~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip 158 (444)
+|++.++| -.|+..--|.+|-.+.... |+++++=. +.-+|.++.... + +
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~-------------------i~tlP~dF~g~~--------~-~ 246 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT-------------------IDTLPEDFTGTN--------W-A 246 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee-------------------eccCccccCCCC--------c-e
Confidence 99999986 5899999999986665544 66554421 111222221110 0 0
Q ss_pred cccccccccccCCeEEEEeCCCCeEE--EEeCCCCeEEEeeeccccccCCceeeeeccceeeeccccc-CCcccceee--
Q 013362 159 YAGLISSSIAFQNHILLCDIVGQRIM--RLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGH-QGSWTDHIQ-- 233 (444)
Q Consensus 159 ~a~~~Sgla~~~~~LyIADT~nhRIR--kvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~~~~-~g~~~~~i~-- 233 (444)
.+.- +..++..||+|+-.-..|- +||..+|....++.-..+. -.|=.|++- .+...++ +++..++|.
T Consensus 247 aaIh---is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg-~~PR~F~i~----~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 247 AAIH---ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEG-QFPRDFNIN----PSGRFLIAANQKSDNITVF 318 (346)
T ss_pred eEEE---ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCC-cCCccceeC----CCCCEEEEEccCCCcEEEE
Confidence 0111 3356889999998777664 5888899988876543321 135445441 1111221 344444444
Q ss_pred eeecCCCeeeEE
Q 013362 234 RCSLLPGRIDIK 245 (444)
Q Consensus 234 ~v~~~pGri~i~ 245 (444)
+++-.+|+++..
T Consensus 319 ~~d~~TG~L~~~ 330 (346)
T COG2706 319 ERDKETGRLTLL 330 (346)
T ss_pred EEcCCCceEEec
Confidence 447788888753
No 45
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=94.84 E-value=0.37 Score=50.00 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=46.0
Q ss_pred CCEEEEEeCCCCeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEcCCC-
Q 013362 12 DDCLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDD- 89 (444)
Q Consensus 12 g~~LYVADTeNHaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG- 89 (444)
++.+||+..+.+.|..||..++. +.++...+ . + +-++.+.+||
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~--------------------------------~--h~~~~~s~Dgr 49 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGG-A--------------------------------P--HAGLKFSPDGR 49 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-T--------------------------------E--EEEEE-TT-SS
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCC-C--------------------------------c--eeEEEecCCCC
Confidence 45788999999999999998865 55554322 1 1 2234455655
Q ss_pred eEEEEeCCCCEEEEEECCCCc-EEEee
Q 013362 90 NLLIINRSFETLWIMDLASGE-IKEAV 115 (444)
Q Consensus 90 ~LYIADagnh~IrkIDl~tG~-I~Tia 115 (444)
.+|++.+ ...|-+||+.+++ +.++.
T Consensus 50 ~~yv~~r-dg~vsviD~~~~~~v~~i~ 75 (369)
T PF02239_consen 50 YLYVANR-DGTVSVIDLATGKVVATIK 75 (369)
T ss_dssp EEEEEET-TSEEEEEETTSSSEEEEEE
T ss_pred EEEEEcC-CCeEEEEECCcccEEEEEe
Confidence 5999986 5799999999986 44554
No 46
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.65 E-value=3 Score=44.03 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=23.7
Q ss_pred eEEcCCCe-EEEE-e-CCCCEEEEEECCCCcEEEeec
Q 013362 83 LMKSEDDN-LLII-N-RSFETLWIMDLASGEIKEAVK 116 (444)
Q Consensus 83 L~~d~dG~-LYIA-D-agnh~IrkIDl~tG~I~Tiag 116 (444)
..+++||. |+++ + .++.+||.+|+.+|+++.+..
T Consensus 267 ~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~ 303 (448)
T PRK04792 267 PRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITR 303 (448)
T ss_pred eeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc
Confidence 45666654 6553 3 355689999999998877663
No 47
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.35 E-value=0.19 Score=50.37 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=47.5
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECCC----CeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMGR----RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF 79 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~t----g~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~ 79 (444)
-|+++|+.| .||++|.++++|-+.+..+ ..+++|+=.. ..|..
T Consensus 189 ~g~~~D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~--------------------------------~~l~~ 235 (287)
T PF03022_consen 189 DGMAIDPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDP--------------------------------RTLQW 235 (287)
T ss_dssp CEEEEETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-C--------------------------------C-GSS
T ss_pred ceEEECCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcC--------------------------------ceeec
Confidence 689999876 8999999999999999765 4677776331 12999
Q ss_pred cceeEEcC--CCeEEEEeCCCCE
Q 013362 80 PWHLMKSE--DDNLLIINRSFET 100 (444)
Q Consensus 80 P~gL~~d~--dG~LYIADagnh~ 100 (444)
|-++.++. +|.|||.-..-|+
T Consensus 236 pd~~~i~~~~~g~L~v~snrl~~ 258 (287)
T PF03022_consen 236 PDGLKIDPEGDGYLWVLSNRLQR 258 (287)
T ss_dssp EEEEEE-T--TS-EEEEE-S--S
T ss_pred cceeeeccccCceEEEEECcchH
Confidence 99999999 8999998755444
No 48
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=94.18 E-value=0.47 Score=49.98 Aligned_cols=38 Identities=11% Similarity=0.065 Sum_probs=31.6
Q ss_pred CCCcceeEEcCCC-eEEEEeCCCCEEEEEECCCCcEEEee
Q 013362 77 LIFPWHLMKSEDD-NLLIINRSFETLWIMDLASGEIKEAV 115 (444)
Q Consensus 77 Ln~P~gL~~d~dG-~LYIADagnh~IrkIDl~tG~I~Tia 115 (444)
=--|.||+++..| +|||||++-+ ++++++..|..+.++
T Consensus 114 CGRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~l~ 152 (376)
T KOG1520|consen 114 CGRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAELLA 152 (376)
T ss_pred cCCcceEEeccCCCeEEEEeccee-eEEECCCCCcceecc
Confidence 4569999999885 9999999875 899999988765555
No 49
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.03 E-value=1.5 Score=44.80 Aligned_cols=103 Identities=13% Similarity=0.223 Sum_probs=63.3
Q ss_pred CCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEcCCCeE
Q 013362 12 DDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNL 91 (444)
Q Consensus 12 g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG~L 91 (444)
++.||+++. ++.+..+|+.+|.+ +|... +..+..+++.+ +.|
T Consensus 256 ~~~vy~~~~-~g~l~ald~~tG~~---------------~W~~~---------------------~~~~~~~~~~~-~~v 297 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDLRSGQI---------------VWKRE---------------------YGSVNDFAVDG-GRI 297 (394)
T ss_pred CCEEEEEEc-CCeEEEEECCCCCE---------------EEeec---------------------CCCccCcEEEC-CEE
Confidence 457898875 57888888876643 23111 11122334554 799
Q ss_pred EEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcccccccccccCC
Q 013362 92 LIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIAFQN 171 (444)
Q Consensus 92 YIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~~~Sgla~~~~ 171 (444)
|+.+ .++++..+|+.+|++. -. ..... +.. .++.+..++
T Consensus 298 y~~~-~~g~l~ald~~tG~~~--W~-~~~~~---------------------------------~~~----~~sp~v~~g 336 (394)
T PRK11138 298 YLVD-QNDRVYALDTRGGVEL--WS-QSDLL---------------------------------HRL----LTAPVLYNG 336 (394)
T ss_pred EEEc-CCCeEEEEECCCCcEE--Ec-ccccC---------------------------------CCc----ccCCEEECC
Confidence 9987 4678999999999763 21 01000 000 111123578
Q ss_pred eEEEEeCCCCeEEEEeCCCCeEE
Q 013362 172 HILLCDIVGQRIMRLNRESGVCS 194 (444)
Q Consensus 172 ~LyIADT~nhRIRkvdl~tG~vS 194 (444)
.||+.|.. ..|..+|.++|.+-
T Consensus 337 ~l~v~~~~-G~l~~ld~~tG~~~ 358 (394)
T PRK11138 337 YLVVGDSE-GYLHWINREDGRFV 358 (394)
T ss_pred EEEEEeCC-CEEEEEECCCCCEE
Confidence 89999865 57889999999863
No 50
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.88 E-value=1.9 Score=46.52 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=32.2
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccC
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPT 41 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGt 41 (444)
+|.+|++.++| .|||+.....+|++++..++..+++.+.
T Consensus 31 ~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l 69 (454)
T TIGR03606 31 KPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTL 69 (454)
T ss_pred CceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecC
Confidence 69999999987 7999998789999999777766655554
No 51
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.84 E-value=3.1 Score=43.24 Aligned_cols=29 Identities=3% Similarity=-0.020 Sum_probs=25.9
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECC
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMG 31 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~ 31 (444)
+|-||++.|.+ -++|+|.+.......|..
T Consensus 24 N~WGia~~p~~-~~WVadngT~~~TlYdg~ 52 (336)
T TIGR03118 24 NAWGLSYRPGG-PFWVANTGTGTATLYVGN 52 (336)
T ss_pred ccceeEecCCC-CEEEecCCcceEEeecCC
Confidence 58899999887 699999999999999874
No 52
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.84 E-value=5.3 Score=41.64 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=24.7
Q ss_pred eeEEcCCCe-EEEE-e-CCCCEEEEEECCCCcEEEeec
Q 013362 82 HLMKSEDDN-LLII-N-RSFETLWIMDLASGEIKEAVK 116 (444)
Q Consensus 82 gL~~d~dG~-LYIA-D-agnh~IrkIDl~tG~I~Tiag 116 (444)
...++++|. |+++ + .++.+|+.+|+.+|.++.+..
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~ 289 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN 289 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECcc
Confidence 446777764 5443 3 456789999999999877653
No 53
>PRK03629 tolB translocation protein TolB; Provisional
Probab=93.73 E-value=2.6 Score=44.18 Aligned_cols=34 Identities=6% Similarity=0.091 Sum_probs=23.9
Q ss_pred eeEEcCCCe--EEEEeC-CCCEEEEEECCCCcEEEee
Q 013362 82 HLMKSEDDN--LLIINR-SFETLWIMDLASGEIKEAV 115 (444)
Q Consensus 82 gL~~d~dG~--LYIADa-gnh~IrkIDl~tG~I~Tia 115 (444)
...++++|. +|.+|. +..+||++|+.+|.++.+.
T Consensus 291 ~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 291 EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT 327 (429)
T ss_pred ceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee
Confidence 345666654 466665 4569999999998887765
No 54
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.33 E-value=2.6 Score=44.52 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=22.3
Q ss_pred eEEcCCCe-E-EEEeC-CCCEEEEEECCCCcEEEee
Q 013362 83 LMKSEDDN-L-LIINR-SFETLWIMDLASGEIKEAV 115 (444)
Q Consensus 83 L~~d~dG~-L-YIADa-gnh~IrkIDl~tG~I~Tia 115 (444)
..+++||. | |.++. ++.+|+++|+.+|+++.+.
T Consensus 311 p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 311 PSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT 346 (448)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe
Confidence 34555553 4 44443 5679999999999887664
No 55
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.16 E-value=0.53 Score=50.72 Aligned_cols=39 Identities=26% Similarity=0.486 Sum_probs=34.2
Q ss_pred CCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEee
Q 013362 77 LIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAV 115 (444)
Q Consensus 77 Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tia 115 (444)
|.+||+|++.++|.|||+.+...+|++++..++..+.+.
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~ 67 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVF 67 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeee
Confidence 999999999999999999998899999998777655444
No 56
>PRK02889 tolB translocation protein TolB; Provisional
Probab=93.10 E-value=9.3 Score=39.94 Aligned_cols=34 Identities=9% Similarity=0.155 Sum_probs=23.2
Q ss_pred eeEEcCCC-eEEEE--eCCCCEEEEEECCCCcEEEee
Q 013362 82 HLMKSEDD-NLLII--NRSFETLWIMDLASGEIKEAV 115 (444)
Q Consensus 82 gL~~d~dG-~LYIA--Dagnh~IrkIDl~tG~I~Tia 115 (444)
...+++|| .|+++ ..++.+||.+|+.++.++.+.
T Consensus 244 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt 280 (427)
T PRK02889 244 APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT 280 (427)
T ss_pred ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECC
Confidence 34566766 45543 356678999999888777664
No 57
>PRK01742 tolB translocation protein TolB; Provisional
Probab=93.06 E-value=7 Score=40.79 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=24.4
Q ss_pred eeEEcCCCe-EEEE-e-CCCCEEEEEECCCCcEEEeec
Q 013362 82 HLMKSEDDN-LLII-N-RSFETLWIMDLASGEIKEAVK 116 (444)
Q Consensus 82 gL~~d~dG~-LYIA-D-agnh~IrkIDl~tG~I~Tiag 116 (444)
.+++++||. |+++ + .++-+||.+|+.+|.++.+..
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~ 289 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTS 289 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeecc
Confidence 356777764 5554 2 455689999999888877764
No 58
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.97 E-value=0.5 Score=48.02 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=47.4
Q ss_pred CcceEEEecC------CCEEEEEeCCCCeEEEEECCCC-eEE---EeccCCCcCccCCcchhhhhcccCcccccCccccC
Q 013362 2 RPAASFYHKD------DDCLYIVDSENHAIRRADMGRR-VLE---TVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEK 71 (444)
Q Consensus 2 ~P~GIa~D~~------g~~LYVADTeNHaIRkIDl~tg-~Vt---TVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~ 71 (444)
.|.|+++-.. .+.++|+|...++|.++.+.++ .+. ++.+ .
T Consensus 254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------------------------~----- 303 (331)
T PF07995_consen 254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLG-------------------------G----- 303 (331)
T ss_dssp -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECT-------------------------T-----
T ss_pred ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccc-------------------------c-----
Confidence 4777776422 2479999999999999998644 221 1110 0
Q ss_pred CCCCCCC-CcceeEEcCCCeEEEEeCCCCEEEE
Q 013362 72 LDPQSLI-FPWHLMKSEDDNLLIINRSFETLWI 103 (444)
Q Consensus 72 ~~~~~Ln-~P~gL~~d~dG~LYIADagnh~Irk 103 (444)
+. .|.+|++.+||.|||+|-.+.+|||
T Consensus 304 -----~~~r~~~v~~~pDG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 304 -----FGGRPRDVAQGPDGALYVSDDSDGKIYR 331 (331)
T ss_dssp -----SSS-EEEEEEETTSEEEEEE-TTTTEEE
T ss_pred -----CCCCceEEEEcCCCeEEEEECCCCeEeC
Confidence 33 5789999999999999999999987
No 59
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.90 E-value=0.31 Score=49.04 Aligned_cols=88 Identities=14% Similarity=0.168 Sum_probs=57.0
Q ss_pred CCcceeEEcCC-CeEEEEeCCCCEE--EEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccc
Q 013362 78 IFPWHLMKSED-DNLLIINRSFETL--WIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSL 154 (444)
Q Consensus 78 n~P~gL~~d~d-G~LYIADagnh~I--rkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~ 154 (444)
--|-+|++|.+ -.+|+.|+.|+.| |.+|..||.++. ++.. + -++. . .+
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn-----r~~i--~---------dlrk------------~-~~ 208 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN-----RKVI--F---------DLRK------------S-QP 208 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccC-----ccee--E---------Eecc------------C-CC
Confidence 34667777765 6899999999999 777799998751 1110 0 0000 0 01
Q ss_pred cCCCcccccccccc-cCCeEEEEeCCCCeEEEEeCCCCeE-EEee
Q 013362 155 KELPYAGLISSSIA-FQNHILLCDIVGQRIMRLNRESGVC-SNFQ 197 (444)
Q Consensus 155 ~Gip~a~~~Sgla~-~~~~LyIADT~nhRIRkvdl~tG~v-ST~~ 197 (444)
.+-+ .|-|++. -.+.||||=-++.+|.++|+.||.+ .+|.
T Consensus 209 ~e~~---~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik 250 (310)
T KOG4499|consen 209 FESL---EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK 250 (310)
T ss_pred cCCC---CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE
Confidence 1111 1333332 3679999999999999999999986 4554
No 60
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=92.81 E-value=0.51 Score=54.11 Aligned_cols=150 Identities=19% Similarity=0.248 Sum_probs=91.1
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW 81 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~ 81 (444)
.|.|||+|-.+.++|-+|+.|.+|-..-|. | + + +| .|| ... |-.|.
T Consensus 1069 SPEGiAVDh~~Rn~ywtDS~lD~IevA~Ld-G-------~--~-rk--vLf-----------~td----------LVNPR 1114 (1289)
T KOG1214|consen 1069 SPEGIAVDHIRRNMYWTDSVLDKIEVALLD-G-------S--E-RK--VLF-----------YTD----------LVNPR 1114 (1289)
T ss_pred CccceeeeeccceeeeeccccchhheeecC-C-------c--e-ee--EEE-----------eec----------ccCcc
Confidence 599999999999999999999998877653 2 2 1 01 121 112 88899
Q ss_pred eeEEcCC-CeEEEEe--CCCCEEEEEECCCCcEEEee-c---CCccceeecceehhhhhhhhhcCCccccccccc-----
Q 013362 82 HLMKSED-DNLLIIN--RSFETLWIMDLASGEIKEAV-K---GFSKVLEICGVLVMEKVFLLKQMPQDWLLHQID----- 149 (444)
Q Consensus 82 gL~~d~d-G~LYIAD--agnh~IrkIDl~tG~I~Tia-g---G~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~----- 149 (444)
+|++|.= |+||.+| +-|-+|-+.+++ |+=..|. . |.+..+..... ++. .=|.-.-+.
T Consensus 1115 ~iv~D~~rgnLYwtDWnRenPkIets~mD-G~NrRilin~DigLPNGLtfdpf---s~~-------LCWvDAGt~rleC~ 1183 (1289)
T KOG1214|consen 1115 AIVVDPIRGNLYWTDWNRENPKIETSSMD-GENRRILINTDIGLPNGLTFDPF---SKL-------LCWVDAGTKRLECT 1183 (1289)
T ss_pred eEEeecccCceeeccccccCCcceeeccC-CccceEEeecccCCCCCceeCcc---cce-------eeEEecCCcceeEe
Confidence 9999874 8999998 456677777775 4433333 1 33333221110 000 011110000
Q ss_pred --cccc----ccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEeeec
Q 013362 150 --SSCS----LKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFS 199 (444)
Q Consensus 150 --~~~~----~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~~fs 199 (444)
.+.+ +.++.+ |-+|+-.+.++|..|=--++|..|++.++.-+.+.++
T Consensus 1184 ~p~g~gRR~i~~~LqY---PF~itsy~~~fY~TDWk~n~vvsv~~~~~~~td~~~p 1236 (1289)
T KOG1214|consen 1184 LPDGTGRRVIQNNLQY---PFSITSYADHFYHTDWKRNGVVSVNKHSGQFTDEYLP 1236 (1289)
T ss_pred cCCCCcchhhhhcccC---ceeeeeccccceeeccccCceEEeecccccccccccc
Confidence 0000 111111 3355666778999999999999999998888777543
No 61
>PRK03629 tolB translocation protein TolB; Provisional
Probab=92.78 E-value=4.2 Score=42.61 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=25.3
Q ss_pred eeEEcCCCe-EEEE-e-CCCCEEEEEECCCCcEEEeec
Q 013362 82 HLMKSEDDN-LLII-N-RSFETLWIMDLASGEIKEAVK 116 (444)
Q Consensus 82 gL~~d~dG~-LYIA-D-agnh~IrkIDl~tG~I~Tiag 116 (444)
.+.+++||. |+++ + .++.+||.+|+++|.++.+..
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~ 284 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD 284 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC
Confidence 356777764 6654 3 456689999999998877664
No 62
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=92.56 E-value=0.54 Score=48.78 Aligned_cols=37 Identities=14% Similarity=0.168 Sum_probs=30.4
Q ss_pred cceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccC
Q 013362 3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPT 41 (444)
Q Consensus 3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGt 41 (444)
|.+--++ ++.|||+|++.+.|.++|+.+|..++|+=-
T Consensus 205 PhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~v 241 (335)
T TIGR03032 205 PHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFL 241 (335)
T ss_pred CcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEEC
Confidence 5555664 347999999999999999999999998744
No 63
>PRK04922 tolB translocation protein TolB; Provisional
Probab=92.56 E-value=4.2 Score=42.41 Aligned_cols=33 Identities=9% Similarity=0.187 Sum_probs=22.4
Q ss_pred eEEcCCCe-E-EEEeC-CCCEEEEEECCCCcEEEee
Q 013362 83 LMKSEDDN-L-LIINR-SFETLWIMDLASGEIKEAV 115 (444)
Q Consensus 83 L~~d~dG~-L-YIADa-gnh~IrkIDl~tG~I~Tia 115 (444)
..+++||. | |.+|. +..+|+.+|+.+|.++.+.
T Consensus 297 ~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 297 PTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT 332 (433)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee
Confidence 45666654 3 44554 4568999999888877664
No 64
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.41 E-value=15 Score=37.92 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=23.6
Q ss_pred eEEcCCCe-EEEE-e-CCCCEEEEEECCCCcEEEeec
Q 013362 83 LMKSEDDN-LLII-N-RSFETLWIMDLASGEIKEAVK 116 (444)
Q Consensus 83 L~~d~dG~-LYIA-D-agnh~IrkIDl~tG~I~Tiag 116 (444)
..+++||. |+++ + .++..||.+|+++|.++.+..
T Consensus 248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~ 284 (430)
T PRK00178 248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN 284 (430)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCeEEccc
Confidence 45666664 5443 3 455689999999998877653
No 65
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=92.38 E-value=4.1 Score=41.07 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=48.5
Q ss_pred EcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcccccc
Q 013362 85 KSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLIS 164 (444)
Q Consensus 85 ~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~~~S 164 (444)
+++ +.||+++ .+++|..+|+.+|++. -. .... + +.. .+
T Consensus 277 ~~~-~~vyv~~-~~G~l~~~d~~tG~~~--W~-~~~~----~-----------------------------~~~----~s 314 (377)
T TIGR03300 277 VDD-NRLYVTD-ADGVVVALDRRSGSEL--WK-NDEL----K-----------------------------YRQ----LT 314 (377)
T ss_pred EeC-CEEEEEC-CCCeEEEEECCCCcEE--Ec-cccc----c-----------------------------CCc----cc
Confidence 444 7899986 6789999999999753 11 0000 0 000 01
Q ss_pred cccccCCeEEEEeCCCCeEEEEeCCCCeEE-EeeeccccccCCce
Q 013362 165 SSIAFQNHILLCDIVGQRIMRLNRESGVCS-NFQFSNFAILGLPY 208 (444)
Q Consensus 165 gla~~~~~LyIADT~nhRIRkvdl~tG~vS-T~~fsg~g~lg~P~ 208 (444)
+....++.||+.+.. ..|..+|.++|.+. ++...+.+....|+
T Consensus 315 sp~i~g~~l~~~~~~-G~l~~~d~~tG~~~~~~~~~~~~~~~sp~ 358 (377)
T TIGR03300 315 APAVVGGYLVVGDFE-GYLHWLSREDGSFVARLKTDGSGIASPPV 358 (377)
T ss_pred cCEEECCEEEEEeCC-CEEEEEECCCCCEEEEEEcCCCccccCCE
Confidence 112346789998754 57999999888763 44444434455553
No 66
>PRK04043 tolB translocation protein TolB; Provisional
Probab=92.31 E-value=3.4 Score=43.60 Aligned_cols=32 Identities=16% Similarity=0.395 Sum_probs=21.9
Q ss_pred EcCCC-eEEE-Ee-CCCCEEEEEECCCCcEEEeec
Q 013362 85 KSEDD-NLLI-IN-RSFETLWIMDLASGEIKEAVK 116 (444)
Q Consensus 85 ~d~dG-~LYI-AD-agnh~IrkIDl~tG~I~Tiag 116 (444)
+++|| .|++ .+ .++.+||.+|+.+|..+.+..
T Consensus 240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~ 274 (419)
T PRK04043 240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITN 274 (419)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCCcEEEccc
Confidence 55555 3443 33 456899999999888777653
No 67
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=92.24 E-value=2.1 Score=45.63 Aligned_cols=97 Identities=13% Similarity=0.150 Sum_probs=57.2
Q ss_pred CCcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhh--h-cc--cCc-----ccccCcccc
Q 013362 1 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWI--M-EK--LGF-----ERDNDTKSE 70 (444)
Q Consensus 1 ~~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~--~-~~--~G~-----a~~a~~~~~ 70 (444)
|+|+|++||+..+.||++|-+.-.+|-=| .+.-+ -.| +-|||- . ++ +|. ...+..-.+
T Consensus 239 RN~qGl~w~P~tg~Lw~~e~g~d~~~~~D----eln~i-~~G-------~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p 306 (399)
T COG2133 239 RNPQGLAWHPVTGALWTTEHGPDALRGPD----ELNSI-RPG-------KNYGWPYAYFGQNYDGRAIPDGTVVAGAIQP 306 (399)
T ss_pred CCccceeecCCCCcEEEEecCCCcccCcc----ccccc-ccC-------CccCCceeccCcccCccccCCCcccccccCC
Confidence 68999999999779999999887772222 22222 111 112332 1 10 111 111121234
Q ss_pred CCCCCCCCCcceeEEcC-C------CeEEEEeCCCCEEEEEECCCC
Q 013362 71 KLDPQSLIFPWHLMKSE-D------DNLLIINRSFETLWIMDLASG 109 (444)
Q Consensus 71 ~~~~~~Ln~P~gL~~d~-d------G~LYIADagnh~IrkIDl~tG 109 (444)
+|.=+.=-.|.++++.. + |.|||+-.+.-.+.+++++.+
T Consensus 307 ~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~ 352 (399)
T COG2133 307 VYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGN 352 (399)
T ss_pred ceeeccccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCC
Confidence 44334445578999874 2 689999999888888877644
No 68
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=92.12 E-value=0.24 Score=41.95 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=27.4
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECC
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMG 31 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~ 31 (444)
-|.||+++++++.||||++..|.|+.....
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 489999999999999999999999998754
No 69
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=92.04 E-value=10 Score=37.92 Aligned_cols=186 Identities=9% Similarity=0.020 Sum_probs=100.2
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCccee
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL 83 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL 83 (444)
.||.|.|..+.||-. +..++|..||..+|..+-+ |..... .+. .-.+.++
T Consensus 30 ~GID~Rpa~G~LYgl-~~~g~lYtIn~~tG~aT~v-g~s~~~---------------~al-------------~g~~~gv 79 (236)
T PF14339_consen 30 VGIDFRPANGQLYGL-GSTGRLYTINPATGAATPV-GASPLT---------------VAL-------------SGTAFGV 79 (236)
T ss_pred EEEEeecCCCCEEEE-eCCCcEEEEECCCCeEEEe-eccccc---------------ccc-------------cCceEEE
Confidence 589999998899988 5569999999999976555 432220 000 0112333
Q ss_pred EEcCC-CeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcccc
Q 013362 84 MKSED-DNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGL 162 (444)
Q Consensus 84 ~~d~d-G~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~~ 162 (444)
-+.+- +.|.|--. +.|=.|+++++|.+...-+ .-.... | +++.. ......+.+|-..
T Consensus 80 DFNP~aDRlRvvs~-~GqNlR~npdtGav~~~Dg-~L~y~~--g-----------d~~~G-------~~p~v~aaAYTNs 137 (236)
T PF14339_consen 80 DFNPAADRLRVVSN-TGQNLRLNPDTGAVTIVDG-NLAYAA--G-----------DMNAG-------TTPGVTAAAYTNS 137 (236)
T ss_pred ecCcccCcEEEEcc-CCcEEEECCCCCCceeccC-ccccCC--C-----------ccccC-------CCCceEEEEEecc
Confidence 33332 46666532 5567788999998643322 100000 0 00000 0000011222111
Q ss_pred cccccccCCeEEEEeCCCCeEEEE-eCCCCeEEEeeeccccccCCceeeee-ccceeeecccccCCcccceeeeeecCCC
Q 013362 163 ISSSIAFQNHILLCDIVGQRIMRL-NRESGVCSNFQFSNFAILGLPYWFAF-PLERVYAVAGGHQGSWTDHIQRCSLLPG 240 (444)
Q Consensus 163 ~Sgla~~~~~LyIADT~nhRIRkv-dl~tG~vST~~fsg~g~lg~P~~l~~-PL~~v~~~~~~~~g~~~~~i~~v~~~pG 240 (444)
..+ +.-.-.||-.|+...++.+. .+++|+..+++.-|+.. ..-+-|.. +-+.....+....+.....+-+|++.+|
T Consensus 138 ~~g-~~t~TtLy~ID~~~~~Lv~Q~ppN~GtL~~vG~LGvd~-~~~~gFDI~~~~~~~~~a~a~~~~~~~~LY~vdL~TG 215 (236)
T PF14339_consen 138 FAG-ATTSTTLYDIDTTLDALVTQNPPNDGTLNTVGPLGVDA-AGDAGFDIAGDGNGGNAAYAVLGVGGSGLYTVDLTTG 215 (236)
T ss_pred cCC-CccceEEEEEecCCCeEEEecCCCCCcEEeeecccccc-CcccceeeecCCCcceEEEEEecCCCcEEEEEECCCc
Confidence 111 11135799999999999888 88999999997655421 11222222 2111222222222222268999999999
Q ss_pred eee
Q 013362 241 RID 243 (444)
Q Consensus 241 ri~ 243 (444)
+..
T Consensus 216 ~at 218 (236)
T PF14339_consen 216 AAT 218 (236)
T ss_pred ccE
Confidence 877
No 70
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=92.00 E-value=6.6 Score=39.76 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=21.4
Q ss_pred EEcCCCe-E-EEEeC-CCCEEEEEECCCCcEEEee
Q 013362 84 MKSEDDN-L-LIINR-SFETLWIMDLASGEIKEAV 115 (444)
Q Consensus 84 ~~d~dG~-L-YIADa-gnh~IrkIDl~tG~I~Tia 115 (444)
.+.++|. | |.++. +..+|+++|+.++.++.+.
T Consensus 284 ~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~ 318 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT 318 (417)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 3445553 4 44554 4559999999988877665
No 71
>PRK05137 tolB translocation protein TolB; Provisional
Probab=91.80 E-value=5.5 Score=41.48 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=24.3
Q ss_pred eeEEcCCCe-EEEEe--CCCCEEEEEECCCCcEEEeec
Q 013362 82 HLMKSEDDN-LLIIN--RSFETLWIMDLASGEIKEAVK 116 (444)
Q Consensus 82 gL~~d~dG~-LYIAD--agnh~IrkIDl~tG~I~Tiag 116 (444)
...+++||. |+++- .++..||.+|+.+|.++.+..
T Consensus 250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~ 287 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD 287 (435)
T ss_pred CcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccC
Confidence 445677764 54443 356789999999998887764
No 72
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=91.68 E-value=16 Score=36.79 Aligned_cols=161 Identities=14% Similarity=0.094 Sum_probs=84.2
Q ss_pred eEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeE
Q 013362 5 ASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLM 84 (444)
Q Consensus 5 GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~ 84 (444)
+.++ .++.||+.+.. ..|..+|..+|.+. |.+... .. - ... .+
T Consensus 60 ~p~v--~~~~v~v~~~~-g~v~a~d~~tG~~~---------------W~~~~~---~~---~----------~~~---p~ 102 (377)
T TIGR03300 60 QPAV--AGGKVYAADAD-GTVVALDAETGKRL---------------WRVDLD---ER---L----------SGG---VG 102 (377)
T ss_pred ceEE--ECCEEEEECCC-CeEEEEEccCCcEe---------------eeecCC---CC---c----------ccc---eE
Confidence 3455 35689998864 67999998777552 321100 00 0 111 23
Q ss_pred EcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcccccc
Q 013362 85 KSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLIS 164 (444)
Q Consensus 85 ~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~~~S 164 (444)
+++ +.+|+.. .++.++.+|+.+|++.--.. ... . . .+
T Consensus 103 v~~-~~v~v~~-~~g~l~ald~~tG~~~W~~~-~~~------~------------------------------~----~~ 139 (377)
T TIGR03300 103 ADG-GLVFVGT-EKGEVIALDAEDGKELWRAK-LSS------E------------------------------V----LS 139 (377)
T ss_pred EcC-CEEEEEc-CCCEEEEEECCCCcEeeeec-cCc------e------------------------------e----ec
Confidence 444 7899876 46799999999998753221 000 0 0 01
Q ss_pred cccccCCeEEEEeCCCCeEEEEeCCCCeEE-EeeeccccccCCceeeeeccceeeecccccCCcccceeeeeecCCCeee
Q 013362 165 SSIAFQNHILLCDIVGQRIMRLNRESGVCS-NFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRID 243 (444)
Q Consensus 165 gla~~~~~LyIADT~nhRIRkvdl~tG~vS-T~~fsg~g~lg~P~~l~~PL~~v~~~~~~~~g~~~~~i~~v~~~pGri~ 243 (444)
.....++.+|+. +.+..|..+|+++|.+. ++...+ ..+... ....|. ...+..+.+....++..+++..|++.
T Consensus 140 ~p~v~~~~v~v~-~~~g~l~a~d~~tG~~~W~~~~~~-~~~~~~-~~~sp~---~~~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 140 PPLVANGLVVVR-TNDGRLTALDAATGERLWTYSRVT-PALTLR-GSASPV---IADGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred CCEEECCEEEEE-CCCCeEEEEEcCCCceeeEEccCC-Cceeec-CCCCCE---EECCEEEEECCCCEEEEEEccCCCEe
Confidence 112235566665 45677999999888752 222111 010000 001121 11122234444567888888888765
Q ss_pred EEEeeeCC
Q 013362 244 IKVNVDIP 251 (444)
Q Consensus 244 i~v~v~~P 251 (444)
=+..+..|
T Consensus 214 W~~~~~~~ 221 (377)
T TIGR03300 214 WEQRVALP 221 (377)
T ss_pred eeeccccC
Confidence 44444334
No 73
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.58 E-value=0.9 Score=31.46 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=23.7
Q ss_pred cCCCEEEEEeCCCCeEEEEECCCCeEEEe
Q 013362 10 KDDDCLYIVDSENHAIRRADMGRRVLETV 38 (444)
Q Consensus 10 ~~g~~LYVADTeNHaIRkIDl~tg~VtTV 38 (444)
++++.|||++.+.+.|-.+|..++.+.--
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~ 29 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIAT 29 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 46778999999999999999877755433
No 74
>PRK00178 tolB translocation protein TolB; Provisional
Probab=91.25 E-value=8.2 Score=39.79 Aligned_cols=32 Identities=13% Similarity=0.317 Sum_probs=22.0
Q ss_pred EEcCCCe-E-EEEeC-CCCEEEEEECCCCcEEEee
Q 013362 84 MKSEDDN-L-LIINR-SFETLWIMDLASGEIKEAV 115 (444)
Q Consensus 84 ~~d~dG~-L-YIADa-gnh~IrkIDl~tG~I~Tia 115 (444)
.+++||. | |.++. ++.+|+++|+.+|.++.+.
T Consensus 293 ~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 293 FWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT 327 (430)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 4555543 4 44554 4568999999999887665
No 75
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=91.23 E-value=0.58 Score=32.16 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=28.9
Q ss_pred CCCcceeEEcCC-CeEEEEeCCCCEEEEEECCC
Q 013362 77 LIFPWHLMKSED-DNLLIINRSFETLWIMDLAS 108 (444)
Q Consensus 77 Ln~P~gL~~d~d-G~LYIADagnh~IrkIDl~t 108 (444)
+..|.+++++.. +.||.+|...+.|++.+++.
T Consensus 8 ~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 889999999876 78999999999999999864
No 76
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=91.15 E-value=15 Score=40.47 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=82.9
Q ss_pred CCCcceeEEc---CC-CeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccc
Q 013362 77 LIFPWHLMKS---ED-DNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSC 152 (444)
Q Consensus 77 Ln~P~gL~~d---~d-G~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~ 152 (444)
+-+|.+|... .+ ..+.|++.-...|-.+|..+|++..+-++.+.+-. ++ .
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~a------------v~--------------v 409 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEA------------VK--------------V 409 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEE------------EE--------------E
Confidence 5555565542 11 35778888888899999998888887765544310 00 0
Q ss_pred cccCCCcccccccccccCCeEEEEeCCCCeEEEEeCC-CCeEEEeeeccccccCCceeeeeccceeeecccccCCcccce
Q 013362 153 SLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRE-SGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDH 231 (444)
Q Consensus 153 ~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~-tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~~~~~g~~~~~ 231 (444)
++.|- + --++....+|++.|..|..++.+|.+ -|.++.|..+-.+-+ .++.+| +|-+..+
T Consensus 410 s~dGK-~----~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~---iAYafP-----------~gy~tq~ 470 (668)
T COG4946 410 SPDGK-K----VVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRW---IAYAFP-----------EGYYTQS 470 (668)
T ss_pred cCCCc-E----EEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCcee---EEEecC-----------cceeeee
Confidence 00110 0 00234455788888888888887765 456666655443321 122334 6667788
Q ss_pred eeeeecCCCeeeEEEeeeCCCCcccccccc
Q 013362 232 IQRCSLLPGRIDIKVNVDIPSDTELVESLQ 261 (444)
Q Consensus 232 i~~v~~~pGri~i~v~v~~P~~~el~~p~~ 261 (444)
|+=++...|+|- .|+.|....-++-+-
T Consensus 471 Iklydm~~~Kiy---~vTT~ta~DfsPaFD 497 (668)
T COG4946 471 IKLYDMDGGKIY---DVTTPTAYDFSPAFD 497 (668)
T ss_pred EEEEecCCCeEE---EecCCcccccCcccC
Confidence 888888888875 778888777665543
No 77
>PRK05137 tolB translocation protein TolB; Provisional
Probab=91.05 E-value=22 Score=37.10 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=23.7
Q ss_pred eeEEcCCCe-E-EEEeC-CCCEEEEEECCCCcEEEeec
Q 013362 82 HLMKSEDDN-L-LIINR-SFETLWIMDLASGEIKEAVK 116 (444)
Q Consensus 82 gL~~d~dG~-L-YIADa-gnh~IrkIDl~tG~I~Tiag 116 (444)
...+++||. | |.+|. +..+|+++|+.+|.++.+..
T Consensus 294 ~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~ 331 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF 331 (435)
T ss_pred ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec
Confidence 345666654 4 44443 45689999999888887763
No 78
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=90.70 E-value=11 Score=38.08 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=22.9
Q ss_pred ceeEEcCCCe-EEEEeCC--CCEEEEEECCCCcEEEee
Q 013362 81 WHLMKSEDDN-LLIINRS--FETLWIMDLASGEIKEAV 115 (444)
Q Consensus 81 ~gL~~d~dG~-LYIADag--nh~IrkIDl~tG~I~Tia 115 (444)
..+.++++|. |+++... ..+|+.+|+.++..+.+.
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc
Confidence 4556676654 5554433 358999999988776554
No 79
>PRK02888 nitrous-oxide reductase; Validated
Probab=90.42 E-value=0.64 Score=51.94 Aligned_cols=85 Identities=8% Similarity=-0.047 Sum_probs=60.7
Q ss_pred CCcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362 1 MRPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP 80 (444)
Q Consensus 1 ~~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P 80 (444)
.+|.|++++|+|..+|++--...-|-.||+.+... -+++.=.. +.-...+ ...=..|
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~-~~~~~~~~-------------~~~vvae---------vevGlGP 377 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD-LFDGKIKP-------------RDAVVAE---------PELGLGP 377 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh-hhhccCCc-------------cceEEEe---------eccCCCc
Confidence 47999999999999999999999999999765432 12221000 0000000 0011348
Q ss_pred ceeEEcCCCeEEEEeCCCCEEEEEECCC
Q 013362 81 WHLMKSEDDNLLIINRSFETLWIMDLAS 108 (444)
Q Consensus 81 ~gL~~d~dG~LYIADagnh~IrkIDl~t 108 (444)
.+.+++++|+.|.+-.-..+|-|||+++
T Consensus 378 LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 378 LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 9999999999999999999999999875
No 80
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=90.35 E-value=1.1 Score=32.68 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=22.5
Q ss_pred CEEEEEeCCCC-eEEEEECCCCeEEEec
Q 013362 13 DCLYIVDSENH-AIRRADMGRRVLETVY 39 (444)
Q Consensus 13 ~~LYVADTeNH-aIRkIDl~tg~VtTVA 39 (444)
+.||.+|...+ .|.+.++......++.
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi 28 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVI 28 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEE
Confidence 37999999999 9999999766666665
No 81
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.44 E-value=3.1 Score=42.13 Aligned_cols=156 Identities=21% Similarity=0.242 Sum_probs=79.2
Q ss_pred CCcceeEEcCCCeEEEEeCCCC--EEEEEECCCCcEEEeec----CCccceeecceehhhhhhhhhcCCccccccc---c
Q 013362 78 IFPWHLMKSEDDNLLIINRSFE--TLWIMDLASGEIKEAVK----GFSKVLEICGVLVMEKVFLLKQMPQDWLLHQ---I 148 (444)
Q Consensus 78 n~P~gL~~d~dG~LYIADagnh--~IrkIDl~tG~I~Tiag----G~~~~~~~~G~li~~~~a~l~~~~~~~~~~~---~ 148 (444)
.+=.||.+..+|.||.+--..+ +||++|+.||++..-.. -+++..+..+.-+. .| -|-+.. .
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~----qL-----TWk~~~~f~y 115 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLY----QL-----TWKEGTGFVY 115 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEE----EE-----ESSSSEEEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEE----EE-----EecCCeEEEE
Confidence 3457899866699999986555 89999999998754321 22222222221111 00 011000 0
Q ss_pred c-ccccc-cCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCe-EEEeeeccccccCCceeeeeccceeeecccccC
Q 013362 149 D-SSCSL-KELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGV-CSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQ 225 (444)
Q Consensus 149 ~-~~~~~-~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~-vST~~fsg~g~lg~P~~l~~PL~~v~~~~~~~~ 225 (444)
+ ..... .-+++...-=||+.++..||++|- +++|+.+|+++-. +.+++.. .-|.|...-.-||.+ .|..++
T Consensus 116 d~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~---~~g~pv~~LNELE~i--~G~IyA 189 (264)
T PF05096_consen 116 DPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDG-SSRLYFLDPETFKEVRTIQVT---DNGRPVSNLNELEYI--NGKIYA 189 (264)
T ss_dssp ETTTTEEEEEEE-SSS--EEEECSSCEEEE-S-SSEEEEE-TTT-SEEEEEE-E---ETTEE---EEEEEEE--TTEEEE
T ss_pred ccccceEEEEEecCCcceEEEcCCCEEEEECC-ccceEEECCcccceEEEEEEE---ECCEECCCcEeEEEE--cCEEEE
Confidence 0 00000 011211111257888889999996 8999999998753 3444432 234555444455554 221122
Q ss_pred Ccc-cceeeeeecCCCeeeEEEee
Q 013362 226 GSW-TDHIQRCSLLPGRIDIKVNV 248 (444)
Q Consensus 226 g~~-~~~i~~v~~~pGri~i~v~v 248 (444)
--| .++|-++|+.+|+|.=.++.
T Consensus 190 NVW~td~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 190 NVWQTDRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp EETTSSEEEEEETTT-BEEEEEE-
T ss_pred EeCCCCeEEEEeCCCCeEEEEEEh
Confidence 222 38899999999998855543
No 82
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.83 E-value=32 Score=36.50 Aligned_cols=76 Identities=24% Similarity=0.305 Sum_probs=52.6
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECC-C-CeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMG-R-RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW 81 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~-t-g~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~ 81 (444)
.+++|.+++. ..+.=+.-..||..|.. . ..+.|+-|-. +...
T Consensus 207 ~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~~~~~~l~gH~-----------------------------------~~v~ 250 (456)
T KOG0266|consen 207 SDVAFSPDGS-YLLSGSDDKTLRIWDLKDDGRNLKTLKGHS-----------------------------------TYVT 250 (456)
T ss_pred eeeEECCCCc-EEEEecCCceEEEeeccCCCeEEEEecCCC-----------------------------------CceE
Confidence 3566766663 44445566777777763 3 2556665442 1225
Q ss_pred eeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEee
Q 013362 82 HLMKSEDDNLLIINRSFETLWIMDLASGEIKEAV 115 (444)
Q Consensus 82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tia 115 (444)
.+++.++|+++++=.+.+.||.||..+|+.....
T Consensus 251 ~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l 284 (456)
T KOG0266|consen 251 SVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL 284 (456)
T ss_pred EEEecCCCCEEEEecCCCcEEEEeccCCeEEEee
Confidence 7888888999999999999999999998765444
No 83
>PRK02889 tolB translocation protein TolB; Provisional
Probab=88.52 E-value=15 Score=38.30 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=23.2
Q ss_pred eeEEcCCCe-E-EEEeC-CCCEEEEEECCCCcEEEee
Q 013362 82 HLMKSEDDN-L-LIINR-SFETLWIMDLASGEIKEAV 115 (444)
Q Consensus 82 gL~~d~dG~-L-YIADa-gnh~IrkIDl~tG~I~Tia 115 (444)
...+++||. | |.+|. +.-+||.+++.+|..+.+.
T Consensus 288 ~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred CeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence 345777764 4 45554 5679999999888776554
No 84
>PRK01029 tolB translocation protein TolB; Provisional
Probab=88.11 E-value=23 Score=37.33 Aligned_cols=89 Identities=12% Similarity=0.109 Sum_probs=50.7
Q ss_pred eeEEcCCCe-E-EEEeC-CCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362 82 HLMKSEDDN-L-LIINR-SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP 158 (444)
Q Consensus 82 gL~~d~dG~-L-YIADa-gnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip 158 (444)
...+++||. | |+++. +..+|+.+|+.+|+.+.+..+..... ...|
T Consensus 331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~-----------------~p~w--------------- 378 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKE-----------------SPSW--------------- 378 (428)
T ss_pred ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCcc-----------------ceEE---------------
Confidence 344666664 4 34443 45689999999999887764211000 0011
Q ss_pred cccccccccccCCeEEEE-eC-CCCeEEEEeCCCCeEEEeeeccccccCCceeee
Q 013362 159 YAGLISSSIAFQNHILLC-DI-VGQRIMRLNRESGVCSNFQFSNFAILGLPYWFA 211 (444)
Q Consensus 159 ~a~~~Sgla~~~~~LyIA-DT-~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~ 211 (444)
+.++..|+++ .. ....|..+++.++....+. .+.|....|.|--
T Consensus 379 --------SpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~ 424 (428)
T PRK01029 379 --------AIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGA 424 (428)
T ss_pred --------CCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecC
Confidence 1234445443 22 3467888888888777664 3445666788753
No 85
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=87.27 E-value=5.8 Score=44.18 Aligned_cols=79 Identities=14% Similarity=0.030 Sum_probs=48.8
Q ss_pred CcceEEEecCCCEEEEEeCCCCeE----------------EEEECCCC-------eEEEe--ccCCCcCccCCcchhhhh
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAI----------------RRADMGRR-------VLETV--YPTSGISKKNNSLWAWIM 56 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaI----------------RkIDl~tg-------~VtTV--AGtG~~~~~~~~l~g~~~ 56 (444)
||-+|++++....+|++.|.|.+- -|+-..++ +-+.+ +|.+..
T Consensus 418 RpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~------------ 485 (616)
T COG3211 418 RPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSV------------ 485 (616)
T ss_pred CccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccc------------
Confidence 799999999988999999988732 22223333 22222 122111
Q ss_pred cccCcccccCccccCCCCCCCCCcceeEEcCCCeEEEEeCCCC
Q 013362 57 EKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNLLIINRSFE 99 (444)
Q Consensus 57 ~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG~LYIADagnh 99 (444)
-+ +.+ ++.-+...|++|=+|++|+.|.|||+--++.
T Consensus 486 ~~-~~~------~~~~~~~~f~~PDnl~fD~~GrLWi~TDg~~ 521 (616)
T COG3211 486 LE-GGA------SANINANWFNSPDNLAFDPWGRLWIQTDGSG 521 (616)
T ss_pred cc-ccc------ccCcccccccCCCceEECCCCCEEEEecCCC
Confidence 00 100 1112235699999999999999999865543
No 86
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.86 E-value=12 Score=40.82 Aligned_cols=76 Identities=11% Similarity=0.017 Sum_probs=45.0
Q ss_pred CCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEcCCCeE
Q 013362 12 DDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNL 91 (444)
Q Consensus 12 g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG~L 91 (444)
++.|||++..+ .|+.+|..+|.+. |.+............ .. -....++++.+ +.+
T Consensus 69 ~g~vyv~s~~g-~v~AlDa~TGk~l---------------W~~~~~~~~~~~~~~-------~~-~~~~rg~av~~-~~v 123 (527)
T TIGR03075 69 DGVMYVTTSYS-RVYALDAKTGKEL---------------WKYDPKLPDDVIPVM-------CC-DVVNRGVALYD-GKV 123 (527)
T ss_pred CCEEEEECCCC-cEEEEECCCCcee---------------eEecCCCCccccccc-------cc-ccccccceEEC-CEE
Confidence 45899998866 5999998877542 322210000000000 00 00124566665 789
Q ss_pred EEEeCCCCEEEEEECCCCcEEE
Q 013362 92 LIINRSFETLWIMDLASGEIKE 113 (444)
Q Consensus 92 YIADagnh~IrkIDl~tG~I~T 113 (444)
|+++. ..++..+|..||++.-
T Consensus 124 ~v~t~-dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 124 FFGTL-DARLVALDAKTGKVVW 144 (527)
T ss_pred EEEcC-CCEEEEEECCCCCEEe
Confidence 99874 5689999999998753
No 87
>PRK01742 tolB translocation protein TolB; Provisional
Probab=86.72 E-value=20 Score=37.41 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=21.8
Q ss_pred ceeEEcCCCe-EE-EEeC-CCCEEEEEECCCCcEEEe
Q 013362 81 WHLMKSEDDN-LL-IINR-SFETLWIMDLASGEIKEA 114 (444)
Q Consensus 81 ~gL~~d~dG~-LY-IADa-gnh~IrkIDl~tG~I~Ti 114 (444)
....+++||. |+ .++. ++-+||.++..++..+.+
T Consensus 295 ~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 295 TEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred CCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 3456777765 44 4443 567999999877766443
No 88
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=86.69 E-value=22 Score=31.37 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=24.1
Q ss_pred cceeEEcCCCeEEEEeCCCCEEEEEECCCCcE
Q 013362 80 PWHLMKSEDDNLLIINRSFETLWIMDLASGEI 111 (444)
Q Consensus 80 P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I 111 (444)
+..+.+.+++.++++-..++.|+.+|+.+++.
T Consensus 138 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 169 (289)
T cd00200 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169 (289)
T ss_pred EEEEEEcCcCCEEEEEcCCCcEEEEEcccccc
Confidence 56777887767777766688999999876654
No 89
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.55 E-value=2.6 Score=43.50 Aligned_cols=68 Identities=19% Similarity=0.339 Sum_probs=52.2
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCccee
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL 83 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL 83 (444)
+|+.||+..+.|+|---|.+++-.+|+.-..+..+.=++. ..|+. .. +..|-||
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g--------------~~gL~--~d----------ipqaEGi 289 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKG--------------NHGLS--SD----------IPQAEGI 289 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccC--------------CCCCc--cc----------CCCccee
Confidence 6899998888999999999999999986665666654421 12332 23 7778999
Q ss_pred EEcCCCeEEEEeCC
Q 013362 84 MKSEDDNLLIINRS 97 (444)
Q Consensus 84 ~~d~dG~LYIADag 97 (444)
+.|++|+|||.---
T Consensus 290 amDd~g~lYIvSEP 303 (316)
T COG3204 290 AMDDDGNLYIVSEP 303 (316)
T ss_pred EECCCCCEEEEecC
Confidence 99999999998643
No 90
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.44 E-value=5.2 Score=40.60 Aligned_cols=83 Identities=20% Similarity=0.141 Sum_probs=51.5
Q ss_pred CcceEEEecCCCEEEEEeCCC------CeEEEEECCCCeE-EEe-ccCCCcCccCCcchhhhhcccC-cccccCccccCC
Q 013362 2 RPAASFYHKDDDCLYIVDSEN------HAIRRADMGRRVL-ETV-YPTSGISKKNNSLWAWIMEKLG-FERDNDTKSEKL 72 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeN------HaIRkIDl~tg~V-tTV-AGtG~~~~~~~~l~g~~~~~~G-~a~~a~~~~~~~ 72 (444)
.|-||++.++| .+||++-+. |+|+++++. |.+ ..+ .+..-. ....+ .....
T Consensus 86 D~Egi~~~~~g-~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~-----------~~~~~~~~~~~------- 145 (326)
T PF13449_consen 86 DPEGIAVPPDG-SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFL-----------PDANGTSGRRN------- 145 (326)
T ss_pred ChhHeEEecCC-CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccc-----------cccCccccccC-------
Confidence 46699995554 799999999 999999976 555 444 222111 00000 00000
Q ss_pred CCCCCCCcceeEEcCCCe-EEEEeCCC---------------CEEEEEECCC
Q 013362 73 DPQSLIFPWHLMKSEDDN-LLIINRSF---------------ETLWIMDLAS 108 (444)
Q Consensus 73 ~~~~Ln~P~gL~~d~dG~-LYIADagn---------------h~IrkIDl~t 108 (444)
=...-+|++.++|. ||++.-.. .+|.++|+.+
T Consensus 146 ----N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~ 193 (326)
T PF13449_consen 146 ----NRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKT 193 (326)
T ss_pred ----CCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCC
Confidence 12246888888877 88887655 5677777665
No 91
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.43 E-value=6.8 Score=39.15 Aligned_cols=153 Identities=18% Similarity=0.176 Sum_probs=81.2
Q ss_pred ceEEEecCCCEEEEEe--CCCCeEEEEECCCCeEE---Eec-----cCCCcCccCCcchhhhhcccCcccccCccccCC-
Q 013362 4 AASFYHKDDDCLYIVD--SENHAIRRADMGRRVLE---TVY-----PTSGISKKNNSLWAWIMEKLGFERDNDTKSEKL- 72 (444)
Q Consensus 4 ~GIa~D~~g~~LYVAD--TeNHaIRkIDl~tg~Vt---TVA-----GtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~- 72 (444)
||+.++ ++.+|..- .++++||+-|+.+|.+. +++ |.|-. +-++.+|-.. =+.|.|-.-. +..|
T Consensus 49 QGL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit-~~gd~~y~LT-w~egvaf~~d--~~t~~ 122 (262)
T COG3823 49 QGLEYL--DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGIT-KLGDYFYQLT-WKEGVAFKYD--ADTLE 122 (262)
T ss_pred cceeee--CCEEEEeccccccceeEEEeccCceEEEEeecCCcccccccee-eccceEEEEE-eccceeEEEC--hHHhh
Confidence 688884 44676654 38999999999988764 344 33322 2223333211 1123321000 0001
Q ss_pred CCCCCCC---cceeEEcCCCeEEEEeCCCCEEEEEECCCC-cEEEeecCCccceeecceehhhhhhhhhcCCcccccccc
Q 013362 73 DPQSLIF---PWHLMKSEDDNLLIINRSFETLWIMDLASG-EIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQI 148 (444)
Q Consensus 73 ~~~~Ln~---P~gL~~d~dG~LYIADagnh~IrkIDl~tG-~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~ 148 (444)
.-.++++ =|||+.|+ .+|..+| |+..++.-||++= ++.++- .+..|.++. -
T Consensus 123 ~lg~~~y~GeGWgLt~d~-~~Limsd-GsatL~frdP~tfa~~~~v~------VT~~g~pv~----~------------- 177 (262)
T COG3823 123 ELGRFSYEGEGWGLTSDD-KNLIMSD-GSATLQFRDPKTFAELDTVQ------VTDDGVPVS----K------------- 177 (262)
T ss_pred hhcccccCCcceeeecCC-cceEeeC-CceEEEecCHHHhhhcceEE------EEECCeecc----c-------------
Confidence 0112444 48999888 4665554 8889999998752 122221 111222211 0
Q ss_pred cccccccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEE-eeeccc
Q 013362 149 DSSCSLKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSN-FQFSNF 201 (444)
Q Consensus 149 ~~~~~~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST-~~fsg~ 201 (444)
+.-|--.++.||--==...||.|+++++|.|.. +..||.
T Consensus 178 --------------LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L 217 (262)
T COG3823 178 --------------LNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGL 217 (262)
T ss_pred --------------ccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCC
Confidence 111223455666554556789999999999865 455553
No 92
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=84.87 E-value=23 Score=37.78 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=30.7
Q ss_pred CeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecc---cccCCccc---ceeeeee
Q 013362 181 QRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVA---GGHQGSWT---DHIQRCS 236 (444)
Q Consensus 181 hRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~---~~~~g~~~---~~i~~v~ 236 (444)
.||++||++||...++ +--+.|+.+++-.+++.+ .+++|-+. +||=-++
T Consensus 168 ~~i~~idl~tG~~~~v-------~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~ 222 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVV-------FEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTIN 222 (386)
T ss_dssp EEEEEEETTT--EEEE-------EEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEE
T ss_pred ceEEEEECCCCceeEE-------EecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEE
Confidence 6899999999999886 334678888777766555 55677665 3565555
No 93
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=83.64 E-value=22 Score=38.10 Aligned_cols=76 Identities=12% Similarity=0.032 Sum_probs=44.9
Q ss_pred CCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEcCCCeE
Q 013362 12 DDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDNL 91 (444)
Q Consensus 12 g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG~L 91 (444)
++.||+.+.. +.|+.+|+.+|.+. |.+.......... +..+.. ++++.+++.+
T Consensus 61 ~g~vy~~~~~-g~l~AlD~~tG~~~---------------W~~~~~~~~~~~~---------~~~~~~--g~~~~~~~~V 113 (488)
T cd00216 61 DGDMYFTTSH-SALFALDAATGKVL---------------WRYDPKLPADRGC---------CDVVNR--GVAYWDPRKV 113 (488)
T ss_pred CCEEEEeCCC-CcEEEEECCCChhh---------------ceeCCCCCccccc---------cccccC--CcEEccCCeE
Confidence 4589999874 78999998777442 3322110000000 000222 2344333789
Q ss_pred EEEeCCCCEEEEEECCCCcEEEee
Q 013362 92 LIINRSFETLWIMDLASGEIKEAV 115 (444)
Q Consensus 92 YIADagnh~IrkIDl~tG~I~Tia 115 (444)
|+++ ..+.|+.+|+.||++.--.
T Consensus 114 ~v~~-~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 114 FFGT-FDGRLVALDAETGKQVWKF 136 (488)
T ss_pred EEec-CCCeEEEEECCCCCEeeee
Confidence 9887 4679999999999876544
No 94
>PRK04043 tolB translocation protein TolB; Provisional
Probab=82.52 E-value=41 Score=35.63 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=21.9
Q ss_pred EEcCCCe--EEEEeCC-------CCEEEEEECCCCcEEEeec
Q 013362 84 MKSEDDN--LLIINRS-------FETLWIMDLASGEIKEAVK 116 (444)
Q Consensus 84 ~~d~dG~--LYIADag-------nh~IrkIDl~tG~I~Tiag 116 (444)
.++++|. +|++... ...|+.+|+++|..+.+..
T Consensus 325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC
Confidence 4555543 4555443 2589999999998877664
No 95
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.35 E-value=66 Score=33.57 Aligned_cols=180 Identities=16% Similarity=0.141 Sum_probs=99.2
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCccee
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL 83 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL 83 (444)
++++|+|+.+.||..=-.--.|-.++..-..+.|+.=+| +.-|-+|
T Consensus 89 S~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g----------------------------------~~DpE~I 134 (316)
T COG3204 89 SSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG----------------------------------FSDPETI 134 (316)
T ss_pred cceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc----------------------------------cCChhHe
Confidence 689999999999988777778888887666777775443 4457788
Q ss_pred EEcCCCeEEEEeCCCCEEEEEECCCC--cEEEee-----cCCcc---ceeecc-eehhhhhhhhh-cCCccccccccc--
Q 013362 84 MKSEDDNLLIINRSFETLWIMDLASG--EIKEAV-----KGFSK---VLEICG-VLVMEKVFLLK-QMPQDWLLHQID-- 149 (444)
Q Consensus 84 ~~d~dG~LYIADagnh~IrkIDl~tG--~I~Tia-----gG~~~---~~~~~G-~li~~~~a~l~-~~~~~~~~~~~~-- 149 (444)
.+.++|.+-|+|-.-.++.++-.+.+ .+..-. +...+ +.++-. .....++-..| ..|+..++-+..
T Consensus 135 eyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~ 214 (316)
T COG3204 135 EYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPS 214 (316)
T ss_pred EEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCc
Confidence 88888888899998888887655433 332211 11111 111000 00000000011 112222221100
Q ss_pred -ccccccCCCccc------cccccccc--CCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceee
Q 013362 150 -SSCSLKELPYAG------LISSSIAF--QNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVY 218 (444)
Q Consensus 150 -~~~~~~Gip~a~------~~Sgla~~--~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~ 218 (444)
........|.+. -+||+... .++|+|--.+.+++..+|+++..++.+-..+ |.-|+......|=++++
T Consensus 215 ~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~-g~~gL~~dipqaEGiam 291 (316)
T COG3204 215 SLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTK-GNHGLSSDIPQAEGIAM 291 (316)
T ss_pred ccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEecc-CCCCCcccCCCcceeEE
Confidence 000111122222 26665544 6789999999999999999988777763222 33344444444433333
No 96
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=82.08 E-value=35 Score=30.03 Aligned_cols=70 Identities=20% Similarity=0.171 Sum_probs=44.8
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECCCCeE-EEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVL-ETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH 82 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~V-tTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g 82 (444)
..++++++++.|+++. .++.|+..++.++.. .++.+.. .....
T Consensus 13 ~~~~~~~~~~~l~~~~-~~g~i~i~~~~~~~~~~~~~~~~-----------------------------------~~i~~ 56 (289)
T cd00200 13 TCVAFSPDGKLLATGS-GDGTIKVWDLETGELLRTLKGHT-----------------------------------GPVRD 56 (289)
T ss_pred EEEEEcCCCCEEEEee-cCcEEEEEEeeCCCcEEEEecCC-----------------------------------cceeE
Confidence 5788988887666665 478899998876532 2221110 00135
Q ss_pred eEEcCCCeEEEEeCCCCEEEEEECCCC
Q 013362 83 LMKSEDDNLLIINRSFETLWIMDLASG 109 (444)
Q Consensus 83 L~~d~dG~LYIADagnh~IrkIDl~tG 109 (444)
+.+.+++..+++-..++.|+.+|+.++
T Consensus 57 ~~~~~~~~~l~~~~~~~~i~i~~~~~~ 83 (289)
T cd00200 57 VAASADGTYLASGSSDKTIRLWDLETG 83 (289)
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence 666666655555556889999999875
No 97
>PTZ00421 coronin; Provisional
Probab=82.04 E-value=51 Score=35.87 Aligned_cols=32 Identities=13% Similarity=0.002 Sum_probs=24.3
Q ss_pred ceeEEcCC-CeEEEEeCCCCEEEEEECCCCcEE
Q 013362 81 WHLMKSED-DNLLIINRSFETLWIMDLASGEIK 112 (444)
Q Consensus 81 ~gL~~d~d-G~LYIADagnh~IrkIDl~tG~I~ 112 (444)
+.|++.++ ++++++=...+.|+.||+.++...
T Consensus 129 ~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~ 161 (493)
T PTZ00421 129 GIVSFHPSAMNVLASAGADMVVNVWDVERGKAV 161 (493)
T ss_pred EEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE
Confidence 46777765 357777778899999999988654
No 98
>PTZ00420 coronin; Provisional
Probab=81.19 E-value=93 Score=34.77 Aligned_cols=32 Identities=25% Similarity=0.101 Sum_probs=26.8
Q ss_pred ceeEEcCCCeEEEEeCCCCEEEEEECCCCcEE
Q 013362 81 WHLMKSEDDNLLIINRSFETLWIMDLASGEIK 112 (444)
Q Consensus 81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~ 112 (444)
..+.++.+|.++++-...++|+.||+.+|.+.
T Consensus 171 ~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 171 SSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred EEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 56778888999888778889999999998753
No 99
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=79.13 E-value=4.1 Score=28.10 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.3
Q ss_pred CeEEEEeCCCCEEEEEECCCCcEE
Q 013362 89 DNLLIINRSFETLWIMDLASGEIK 112 (444)
Q Consensus 89 G~LYIADagnh~IrkIDl~tG~I~ 112 (444)
+.|||++.+.++|-.||+.++.+.
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~~ 27 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKVI 27 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeEE
Confidence 579999999999999999888654
No 100
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=78.80 E-value=95 Score=33.01 Aligned_cols=73 Identities=22% Similarity=0.224 Sum_probs=54.1
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH 82 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g 82 (444)
..++|++.+ .+++.=+..+.||.-|+.+++ +.++.|-... + .+
T Consensus 250 ~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~--------------------------------i---s~ 293 (456)
T KOG0266|consen 250 TSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG--------------------------------I---SG 293 (456)
T ss_pred EEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCc--------------------------------e---EE
Confidence 567888888 678887888889998888753 3444443211 1 25
Q ss_pred eEEcCCCeEEEEeCCCCEEEEEECCCCcEE
Q 013362 83 LMKSEDDNLLIINRSFETLWIMDLASGEIK 112 (444)
Q Consensus 83 L~~d~dG~LYIADagnh~IrkIDl~tG~I~ 112 (444)
+++..+|+++++-.....|+.||+.+|.+.
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL 323 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCcee
Confidence 677788888888888999999999999954
No 101
>PRK02888 nitrous-oxide reductase; Validated
Probab=77.92 E-value=30 Score=39.18 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=29.3
Q ss_pred CCCcceeEEcCCC-eEEEEeCCCCEEEEEECCCCc
Q 013362 77 LIFPWHLMKSEDD-NLLIINRSFETLWIMDLASGE 110 (444)
Q Consensus 77 Ln~P~gL~~d~dG-~LYIADagnh~IrkIDl~tG~ 110 (444)
=++|||+.+++|| .+|++.-..+.+-+||.++.+
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 4689999999996 499999999999999987543
No 102
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=77.21 E-value=91 Score=31.96 Aligned_cols=106 Identities=19% Similarity=0.164 Sum_probs=61.5
Q ss_pred CCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccccccccc
Q 013362 88 DDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSI 167 (444)
Q Consensus 88 dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~~~Sgla 167 (444)
++.||++.. ++.++.+|+.+|++.--.. .+ - +..++
T Consensus 256 ~~~vy~~~~-~g~l~ald~~tG~~~W~~~-~~-------------------------------------~-----~~~~~ 291 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDLRSGQIVWKRE-YG-------------------------------------S-----VNDFA 291 (394)
T ss_pred CCEEEEEEc-CCeEEEEECCCCCEEEeec-CC-------------------------------------C-----ccCcE
Confidence 378999885 5789999999997542110 00 0 01123
Q ss_pred ccCCeEEEEeCCCCeEEEEeCCCCeEEEeeecc--ccccCCceeeeeccceeeecccccCCcccceeeeeecCCCeeeEE
Q 013362 168 AFQNHILLCDIVGQRIMRLNRESGVCSNFQFSN--FAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRIDIK 245 (444)
Q Consensus 168 ~~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg--~g~lg~P~~l~~PL~~v~~~~~~~~g~~~~~i~~v~~~pGri~i~ 245 (444)
..++.||+++. ++++..+|.++|...= .... ..... .|. ...+..+.+....+|.-++..+|++.=+
T Consensus 292 ~~~~~vy~~~~-~g~l~ald~~tG~~~W-~~~~~~~~~~~------sp~---v~~g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 292 VDGGRIYLVDQ-NDRVYALDTRGGVELW-SQSDLLHRLLT------APV---LYNGYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred EECCEEEEEcC-CCeEEEEECCCCcEEE-cccccCCCccc------CCE---EECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 45788999875 5789999999996521 1111 11222 231 1233333445556677778888876544
Q ss_pred Eee
Q 013362 246 VNV 248 (444)
Q Consensus 246 v~v 248 (444)
.++
T Consensus 361 ~~~ 363 (394)
T PRK11138 361 QKV 363 (394)
T ss_pred EEc
Confidence 433
No 103
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=76.06 E-value=33 Score=39.38 Aligned_cols=118 Identities=14% Similarity=0.047 Sum_probs=81.5
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW 81 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~ 81 (444)
.|.|++.|..++++|..|.+++.|-..++....-.+++... |..|.
T Consensus 481 ~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~----------------------------------l~~~r 526 (877)
T KOG1215|consen 481 IPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKD----------------------------------LDLPR 526 (877)
T ss_pred ccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEecC----------------------------------CCCcc
Confidence 47899999999999999999999999985333233333321 45677
Q ss_pred eeEEcCC-CeEEEEeCC-CCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362 82 HLMKSED-DNLLIINRS-FETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY 159 (444)
Q Consensus 82 gL~~d~d-G~LYIADag-nh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~ 159 (444)
.+++++. |-+|..|.+ ..+|-|-.++.-...++.... + ..
T Consensus 527 ~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~--~----------------------------------~~-- 568 (877)
T KOG1215|consen 527 SIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTNG--I----------------------------------LW-- 568 (877)
T ss_pred ceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeCC--c----------------------------------cC--
Confidence 8888876 889999998 456766666533343333110 0 11
Q ss_pred ccccccc--cccCCeEEEEeCCCC-eEEEEeCCCCeEE
Q 013362 160 AGLISSS--IAFQNHILLCDIVGQ-RIMRLNRESGVCS 194 (444)
Q Consensus 160 a~~~Sgl--a~~~~~LyIADT~nh-RIRkvdl~tG~vS 194 (444)
+.++ ....+.+|-+|.-.+ -|.+++..++...
T Consensus 569 ---p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~ 603 (877)
T KOG1215|consen 569 ---PNGLTIDYETDRLYWADAKLDYTIESANMDGQNRR 603 (877)
T ss_pred ---CCcceEEeecceeEEEcccCCcceeeeecCCCceE
Confidence 1222 345778999999998 7999998877776
No 104
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=75.75 E-value=32 Score=34.94 Aligned_cols=40 Identities=25% Similarity=0.335 Sum_probs=33.9
Q ss_pred CcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCC
Q 013362 79 FPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGF 118 (444)
Q Consensus 79 ~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~ 118 (444)
+.-.|..+++|+++|+-+..+.|++||..||+|.-..+|.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence 3345677788999999999999999999999998887654
No 105
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=74.60 E-value=5.6 Score=33.69 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=28.0
Q ss_pred CCCcceeEEcCC-CeEEEEeCCCCEEEEEECC
Q 013362 77 LIFPWHLMKSED-DNLLIINRSFETLWIMDLA 107 (444)
Q Consensus 77 Ln~P~gL~~d~d-G~LYIADagnh~IrkIDl~ 107 (444)
|.+|-||.++++ ..||||+...|.|+.+...
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 999999999986 6799999999999998754
No 106
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=73.86 E-value=78 Score=34.13 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=29.9
Q ss_pred CCcceeEEcC-CCeEEEEeCCCCEEEEEECCCCcEEEeecC
Q 013362 78 IFPWHLMKSE-DDNLLIINRSFETLWIMDLASGEIKEAVKG 117 (444)
Q Consensus 78 n~P~gL~~d~-dG~LYIADagnh~IrkIDl~tG~I~TiagG 117 (444)
.|--+|.+++ ++.|+|+-+..+.|++||..||+|.-+.|+
T Consensus 271 ~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 271 LHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp --EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred cccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 4455677777 689999999999999999999999988863
No 107
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=73.11 E-value=21 Score=38.19 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=49.5
Q ss_pred CcceEEEecCC------CEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCC
Q 013362 2 RPAASFYHKDD------DCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQ 75 (444)
Q Consensus 2 ~P~GIa~D~~g------~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~ 75 (444)
.|.|++|-... +.|||+--..-.+.++++..+.-.++.|. ..++.|
T Consensus 315 ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~f-------------l~~d~~--------------- 366 (399)
T COG2133 315 APSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGF-------------LSGDLG--------------- 366 (399)
T ss_pred ccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEE-------------EecCCC---------------
Confidence 37899884221 47999987777666676544412222221 101111
Q ss_pred CCCCcceeEEcCCCeEEEEeCC-CCEEEEEECC
Q 013362 76 SLIFPWHLMKSEDDNLLIINRS-FETLWIMDLA 107 (444)
Q Consensus 76 ~Ln~P~gL~~d~dG~LYIADag-nh~IrkIDl~ 107 (444)
.-|.||++..||.|||+|-. +.+|||+..+
T Consensus 367 --gR~~dV~v~~DGallv~~D~~~g~i~Rv~~~ 397 (399)
T COG2133 367 --GRPRDVAVAPDGALLVLTDQGDGRILRVSYA 397 (399)
T ss_pred --CcccceEECCCCeEEEeecCCCCeEEEecCC
Confidence 23789999999999999888 6699999764
No 108
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=72.96 E-value=6.7 Score=27.59 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=22.0
Q ss_pred CeEEEEeCCCCEEEEEECCCCcEEEee
Q 013362 89 DNLLIINRSFETLWIMDLASGEIKEAV 115 (444)
Q Consensus 89 G~LYIADagnh~IrkIDl~tG~I~Tia 115 (444)
|.+|+. +.+..|+.+|+.||++.--.
T Consensus 1 ~~v~~~-~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 1 GRVYVG-TPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp TEEEEE-TTTSEEEEEETTTTSEEEEE
T ss_pred CEEEEe-CCCCEEEEEECCCCCEEEee
Confidence 568888 99999999999999976544
No 109
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=71.29 E-value=50 Score=34.37 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=59.5
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH 82 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g 82 (444)
.+|-|+++|..|.|.. .++.|+.+|.-+|+ .+|+.+.- ...+.|.+
T Consensus 191 ~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~~~~tfs~~~--------------------------------~~~~~~~~ 237 (311)
T KOG1446|consen 191 TDLEFSPDGKSILLST-NASFIYLLDAFDGTVKSTFSGYP--------------------------------NAGNLPLS 237 (311)
T ss_pred eeeEEcCCCCEEEEEe-CCCcEEEEEccCCcEeeeEeecc--------------------------------CCCCccee
Confidence 3678899998777765 56788889877775 33443331 11455666
Q ss_pred eEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecC
Q 013362 83 LMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKG 117 (444)
Q Consensus 83 L~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG 117 (444)
-.+.+|+.+.+.-++..+|.+|++.+|..--...|
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 77788899999999999999999999987655443
No 110
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=70.46 E-value=22 Score=37.99 Aligned_cols=67 Identities=18% Similarity=0.222 Sum_probs=37.4
Q ss_pred eEEEEe-CCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcccccccccc
Q 013362 90 NLLIIN-RSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSSIA 168 (444)
Q Consensus 90 ~LYIAD-agnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~~~Sgla~ 168 (444)
.||.+| .++.+++.+|+++|+|+-+..|.+.. +.|. -++.
T Consensus 50 llF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~--~~g~-------------------------------------~~s~ 90 (386)
T PF14583_consen 50 LLFASDFDGNRNLYLLDLATGEITQLTDGPGDN--TFGG-------------------------------------FLSP 90 (386)
T ss_dssp EEEEE-TTSS-EEEEEETTT-EEEE---SS-B---TTT--------------------------------------EE-T
T ss_pred EEEEeccCCCcceEEEEcccCEEEECccCCCCC--ccce-------------------------------------EEec
Confidence 466666 46788999999999999888543210 0010 0223
Q ss_pred cCCeEEEEeCCCCeEEEEeCCCCeEEEe
Q 013362 169 FQNHILLCDIVGQRIMRLNRESGVCSNF 196 (444)
Q Consensus 169 ~~~~LyIADT~nhRIRkvdl~tG~vST~ 196 (444)
..+.||... .++++++||++|+....|
T Consensus 91 ~~~~~~Yv~-~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 91 DDRALYYVK-NGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp TSSEEEEEE-TTTEEEEEETTT--EEEE
T ss_pred CCCeEEEEE-CCCeEEEEECCcCcEEEE
Confidence 456665443 347899999999998776
No 111
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=69.96 E-value=60 Score=35.56 Aligned_cols=126 Identities=10% Similarity=0.156 Sum_probs=69.8
Q ss_pred CCeEEEEeCCCCEEEEEECCCCcEEEeec-CCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcccccccc
Q 013362 88 DDNLLIINRSFETLWIMDLASGEIKEAVK-GFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLISSS 166 (444)
Q Consensus 88 dG~LYIADagnh~IrkIDl~tG~I~Tiag-G~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~~~Sgl 166 (444)
+|.||+++..+ .|+.+|+.||++.--.. +.+.... + . .++...-.++
T Consensus 69 ~g~vyv~s~~g-~v~AlDa~TGk~lW~~~~~~~~~~~----------------~---------~------~~~~~~~rg~ 116 (527)
T TIGR03075 69 DGVMYVTTSYS-RVYALDAKTGKELWKYDPKLPDDVI----------------P---------V------MCCDVVNRGV 116 (527)
T ss_pred CCEEEEECCCC-cEEEEECCCCceeeEecCCCCcccc----------------c---------c------cccccccccc
Confidence 48999998755 69999999998653321 1110000 0 0 0000001233
Q ss_pred cccCCeEEEEeCCCCeEEEEeCCCCeEE-Eeeecc----ccccCCceeeeeccceeeecccccCCcccceeeeeecCCCe
Q 013362 167 IAFQNHILLCDIVGQRIMRLNRESGVCS-NFQFSN----FAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGR 241 (444)
Q Consensus 167 a~~~~~LyIADT~nhRIRkvdl~tG~vS-T~~fsg----~g~lg~P~~l~~PL~~v~~~~~~~~g~~~~~i~~v~~~pGr 241 (444)
+..++.||+++. ..++..+|.+||.+- .++..+ ..+.+.|.-.. +++|-....-......+|.-+|..+|+
T Consensus 117 av~~~~v~v~t~-dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~---g~Vivg~~~~~~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 117 ALYDGKVFFGTL-DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVK---GKVITGISGGEFGVRGYVTAYDAKTGK 192 (527)
T ss_pred eEECCEEEEEcC-CCEEEEEECCCCCEEeecccccccccccccCCcEEEC---CEEEEeecccccCCCcEEEEEECCCCc
Confidence 455778998865 457999999999873 222221 12233333221 233332221112245689999999999
Q ss_pred eeEEEeee
Q 013362 242 IDIKVNVD 249 (444)
Q Consensus 242 i~i~v~v~ 249 (444)
..=+....
T Consensus 193 ~lW~~~~~ 200 (527)
T TIGR03075 193 LVWRRYTV 200 (527)
T ss_pred eeEeccCc
Confidence 88777753
No 112
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=66.59 E-value=13 Score=24.56 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=20.4
Q ss_pred CCCeEEEEeCCCCEEEEEECCCCcEE
Q 013362 87 EDDNLLIINRSFETLWIMDLASGEIK 112 (444)
Q Consensus 87 ~dG~LYIADagnh~IrkIDl~tG~I~ 112 (444)
.+|.+|+++ .+..+..+|..+|++.
T Consensus 5 ~~~~v~~~~-~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 5 SDGTVYVGS-TDGTLYALDAKTGEIL 29 (33)
T ss_pred ECCEEEEEc-CCCEEEEEEcccCcEE
Confidence 347899986 4689999999999875
No 113
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=66.16 E-value=86 Score=33.13 Aligned_cols=81 Identities=19% Similarity=0.289 Sum_probs=44.8
Q ss_pred EecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEcC
Q 013362 8 YHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE 87 (444)
Q Consensus 8 ~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~ 87 (444)
++..++.+|+ =|++..|+.+|+....+.....-......+ .--+|. .+|. .-++++.
T Consensus 191 ~~~~~~~~~F-~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e-~~~~Wr--PGG~-------------------Q~~A~~~ 247 (342)
T PF06433_consen 191 YSRDGGRLYF-VSYEGNVYSADLSGDSAKFGKPWSLLTDAE-KADGWR--PGGW-------------------QLIAYHA 247 (342)
T ss_dssp EETTTTEEEE-EBTTSEEEEEEETTSSEEEEEEEESS-HHH-HHTTEE--E-SS-------------------S-EEEET
T ss_pred eECCCCeEEE-EecCCEEEEEeccCCcccccCcccccCccc-cccCcC--Ccce-------------------eeeeecc
Confidence 3445556777 477899999999877766554321100000 000121 1111 1244443
Q ss_pred -CCeEEEEeC----CCC-----EEEEEECCCCcE
Q 013362 88 -DDNLLIINR----SFE-----TLWIMDLASGEI 111 (444)
Q Consensus 88 -dG~LYIADa----gnh-----~IrkIDl~tG~I 111 (444)
.+.|||.|- ++| .||.+|++|++.
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr 281 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR 281 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeE
Confidence 489999874 333 699999999974
No 114
>PTZ00420 coronin; Provisional
Probab=65.40 E-value=2.3e+02 Score=31.71 Aligned_cols=31 Identities=6% Similarity=-0.106 Sum_probs=22.6
Q ss_pred ceeEEcCCCe-EEEEeCCCCEEEEEECCCCcE
Q 013362 81 WHLMKSEDDN-LLIINRSFETLWIMDLASGEI 111 (444)
Q Consensus 81 ~gL~~d~dG~-LYIADagnh~IrkIDl~tG~I 111 (444)
..|++.+++. ++++-...+.|+.||+.++..
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~ 160 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR 160 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcE
Confidence 4677777654 444556688999999998864
No 115
>PTZ00421 coronin; Provisional
Probab=65.31 E-value=53 Score=35.75 Aligned_cols=31 Identities=29% Similarity=0.236 Sum_probs=26.2
Q ss_pred ceeEEcCCCeEEEEeCCCCEEEEEECCCCcE
Q 013362 81 WHLMKSEDDNLLIINRSFETLWIMDLASGEI 111 (444)
Q Consensus 81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~I 111 (444)
..|++..+|.++++-...++|+.||+.+|..
T Consensus 172 ~sla~spdG~lLatgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 172 TSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred EEEEEECCCCEEEEecCCCEEEEEECCCCcE
Confidence 4677777888888888999999999998864
No 116
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=64.13 E-value=1.8e+02 Score=31.20 Aligned_cols=33 Identities=9% Similarity=0.274 Sum_probs=24.6
Q ss_pred ccCCeEEEEeCCCCeEEEEeCCCCeEEEeeecc
Q 013362 168 AFQNHILLCDIVGQRIMRLNRESGVCSNFQFSN 200 (444)
Q Consensus 168 ~~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg 200 (444)
...+.|.|=|.-.+++|.+-..---|..+.|.|
T Consensus 305 ~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~ 337 (399)
T KOG0296|consen 305 SVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN 337 (399)
T ss_pred cccceEEEEecccchhheeccCCCceEEEEEcC
Confidence 357899999999999999765544466665555
No 117
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=63.58 E-value=31 Score=36.09 Aligned_cols=80 Identities=18% Similarity=0.153 Sum_probs=58.3
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCC-cce
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIF-PWH 82 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~-P~g 82 (444)
+.|+|+|..+.|..|-+.-+.||.-+...- -...|+... .+.. +.+
T Consensus 31 S~l~FSP~~~~~~~A~SWD~tVR~wevq~~--g~~~~ka~~-------------------------------~~~~PvL~ 77 (347)
T KOG0647|consen 31 SALAFSPQADNLLAAGSWDGTVRIWEVQNS--GQLVPKAQQ-------------------------------SHDGPVLD 77 (347)
T ss_pred heeEeccccCceEEecccCCceEEEEEecC--Ccccchhhh-------------------------------ccCCCeEE
Confidence 468899977789999999999999987541 122232211 1222 358
Q ss_pred eEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeec
Q 013362 83 LMKSEDDNLLIINRSFETLWIMDLASGEIKEAVK 116 (444)
Q Consensus 83 L~~d~dG~LYIADagnh~IrkIDl~tG~I~Tiag 116 (444)
+++.+||+...+-.-..+.+.+|+.+|++..++.
T Consensus 78 v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~ 111 (347)
T KOG0647|consen 78 VCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAA 111 (347)
T ss_pred EEEccCCceEEeeccCCceEEEEccCCCeeeeee
Confidence 8898888766666677899999999999999884
No 118
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=62.91 E-value=76 Score=37.38 Aligned_cols=106 Identities=13% Similarity=0.195 Sum_probs=59.3
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECCCC-----eE----EEeccCCCcCccCCcchhhhhcc-cCcccccCccccCCC
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMGRR-----VL----ETVYPTSGISKKNNSLWAWIMEK-LGFERDNDTKSEKLD 73 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg-----~V----tTVAGtG~~~~~~~~l~g~~~~~-~G~a~~a~~~~~~~~ 73 (444)
++|+||++|+.||+|++ |.-||+.+-.+- +| .++++-+.. ++ . |.++. .+..... +.+.+.
T Consensus 17 t~i~~d~~gefi~tcgs-dg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~---s~-~--f~~~s~~~tv~~y--~fps~~ 87 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGS-DGDIRKWKTNSDEEEPETIDISGELVSSIACY---SN-H--FLTGSEQNTVLRY--KFPSGE 87 (933)
T ss_pred EEEEEcCCCCEEEEecC-CCceEEeecCCcccCCchhhccCceeEEEeec---cc-c--eEEeeccceEEEe--eCCCCC
Confidence 57999999999999998 588999874322 11 122222211 00 0 01000 0111111 111122
Q ss_pred C----CCCCCcc-eeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCC
Q 013362 74 P----QSLIFPW-HLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGF 118 (444)
Q Consensus 74 ~----~~Ln~P~-gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~ 118 (444)
+ .+|..|. +++++.+|+..+|-..--.|..+++.++.....+.|-
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh 137 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH 137 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc
Confidence 2 2466665 4556777888888888888888888877666666543
No 119
>PRK01029 tolB translocation protein TolB; Provisional
Probab=62.00 E-value=89 Score=33.03 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=23.7
Q ss_pred eeEEcCCCe-EEEE-e-CCCCEEEEEECCCCcEEEeec
Q 013362 82 HLMKSEDDN-LLII-N-RSFETLWIMDLASGEIKEAVK 116 (444)
Q Consensus 82 gL~~d~dG~-LYIA-D-agnh~IrkIDl~tG~I~Tiag 116 (444)
...+++||. ||++ . .+...|+.+|+.+|+.+.+..
T Consensus 375 ~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 375 SPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 345666653 5443 3 355789999999998887764
No 120
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=61.94 E-value=59 Score=34.73 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=48.2
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECC--CCeEEE-eccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCC
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMG--RRVLET-VYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLI 78 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~--tg~VtT-VAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln 78 (444)
+|.|++.|...+.|||++- +..|+|++.. .+.-.+ |+-.+.. +. ..
T Consensus 209 Q~EGCVVDDe~g~LYvgEE-~~GIW~y~Aep~~~~~~~~v~~~~g~---------------~l---------------~a 257 (381)
T PF02333_consen 209 QPEGCVVDDETGRLYVGEE-DVGIWRYDAEPEGGNDRTLVASADGD---------------GL---------------VA 257 (381)
T ss_dssp -EEEEEEETTTTEEEEEET-TTEEEEEESSCCC-S--EEEEEBSSS---------------SB----------------S
T ss_pred cceEEEEecccCCEEEecC-ccEEEEEecCCCCCCcceeeeccccc---------------cc---------------cc
Confidence 6889999999899999985 6899999975 222112 2111000 01 11
Q ss_pred CcceeEEc----CCCeEEEEeCCCCEEEEEECCC
Q 013362 79 FPWHLMKS----EDDNLLIINRSFETLWIMDLAS 108 (444)
Q Consensus 79 ~P~gL~~d----~dG~LYIADagnh~IrkIDl~t 108 (444)
-.-||++- ..|.|.+++.++++.-.++...
T Consensus 258 DvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 258 DVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp -EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred CccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 12355542 3478999999999999999763
No 121
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=61.93 E-value=2.2e+02 Score=33.09 Aligned_cols=57 Identities=23% Similarity=0.380 Sum_probs=37.0
Q ss_pred CcccceeeeeecCCCeeeEEEe-----------------eeCCC--Cc---ccccccccceeeeeeccceeeeeccccc
Q 013362 226 GSWTDHIQRCSLLPGRIDIKVN-----------------VDIPS--DT---ELVESLQEGCIWRQARGTASVVLRAEDV 282 (444)
Q Consensus 226 g~~~~~i~~v~~~pGri~i~v~-----------------v~~P~--~~---el~~p~~e~ciwrq~rg~~~~~~~~~~~ 282 (444)
..|...|.-+|+.+|++.=.-. +|++. |. -++.+-+.+=+|--=|-.|..+...++.
T Consensus 410 n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e~ 488 (764)
T TIGR03074 410 EKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEEV 488 (764)
T ss_pred ccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeeceee
Confidence 4566778888888887654332 23332 21 3556666777888888888888876664
No 122
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=60.88 E-value=40 Score=24.38 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=25.4
Q ss_pred CeEEEEeCCCC-eEEEEeCCCCeEEEeeecc
Q 013362 171 NHILLCDIVGQ-RIMRLNRESGVCSNFQFSN 200 (444)
Q Consensus 171 ~~LyIADT~nh-RIRkvdl~tG~vST~~fsg 200 (444)
+.||-+|...+ +|.+.++.+....++--.+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~ 31 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDD 31 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESS
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECC
Confidence 57999999999 9999999999877774333
No 123
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=59.23 E-value=1.3e+02 Score=33.26 Aligned_cols=154 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCccee
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL 83 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL 83 (444)
+++.+..+| .|.-|--+...|+.+|++++++--..-..+. |.++
T Consensus 72 ~s~~fR~DG-~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~a-----------------------------------pv~~ 115 (487)
T KOG0310|consen 72 YSVDFRSDG-RLLAAGDESGHVKVFDMKSRVILRQLYAHQA-----------------------------------PVHV 115 (487)
T ss_pred eEEEeecCC-eEEEccCCcCcEEEeccccHHHHHHHhhccC-----------------------------------ceeE
Q ss_pred EE---cCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcc
Q 013362 84 MK---SEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYA 160 (444)
Q Consensus 84 ~~---d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a 160 (444)
.. .+ +.+++.-.-...++.+|+.++.++.-..|.....-+-
T Consensus 116 ~~f~~~d-~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g----------------------------------- 159 (487)
T KOG0310|consen 116 TKFSPQD-NTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG----------------------------------- 159 (487)
T ss_pred EEecccC-CeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee-----------------------------------
Q ss_pred cccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeee--ccceeeeccc-ccCCcccceeeee-e
Q 013362 161 GLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAF--PLERVYAVAG-GHQGSWTDHIQRC-S 236 (444)
Q Consensus 161 ~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~--PL~~v~~~~~-~~~g~~~~~i~~v-~ 236 (444)
.+...+++|+++=.+-|.||-+|..+.. +.+ +.|++ |.|.+....+ +.--+.---..|| |
T Consensus 160 ----~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v-----------~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWD 223 (487)
T KOG0310|consen 160 ----DISPANDHIVVTGSYDGKVRLWDTRSLT-SRV-----------VELNHGCPVESVLALPSGSLIASAGGNSVKVWD 223 (487)
T ss_pred ----ccccCCCeEEEecCCCceEEEEEeccCC-cee-----------EEecCCCceeeEEEcCCCCEEEEcCCCeEEEEE
Q ss_pred cCCCeeeEE
Q 013362 237 LLPGRIDIK 245 (444)
Q Consensus 237 ~~pGri~i~ 245 (444)
+..|+..+.
T Consensus 224 l~~G~qll~ 232 (487)
T KOG0310|consen 224 LTTGGQLLT 232 (487)
T ss_pred ecCCceehh
No 124
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=59.08 E-value=1.6e+02 Score=30.78 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=27.9
Q ss_pred cccccccccCCeEEEEeCCCCeEEEEeCCCCeE
Q 013362 161 GLISSSIAFQNHILLCDIVGQRIMRLNRESGVC 193 (444)
Q Consensus 161 ~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~v 193 (444)
..+.+++-..++.++|=.....|+..|+.++.+
T Consensus 234 ~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 234 DIVNSLCFSPNRYWLCAATATSIKIWDLESKAV 266 (315)
T ss_pred CeEeeEEecCCceeEeeccCCceEEEeccchhh
Confidence 345667778899999999999999999999876
No 125
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=58.97 E-value=7.7 Score=27.85 Aligned_cols=22 Identities=5% Similarity=0.042 Sum_probs=18.1
Q ss_pred CCCcceeEEcCCCeEEEEeCCC
Q 013362 77 LIFPWHLMKSEDDNLLIINRSF 98 (444)
Q Consensus 77 Ln~P~gL~~d~dG~LYIADagn 98 (444)
.-.|.+|++|.+|++||+=..+
T Consensus 12 ~~~~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 12 QDYGNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred ceeEEEEEECCCCCEEEEEeec
Confidence 3468999999999999986554
No 126
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=56.10 E-value=2.5e+02 Score=30.20 Aligned_cols=45 Identities=11% Similarity=0.069 Sum_probs=31.6
Q ss_pred ccccCCeEEEEeCCCCeEEEEeCCCCeEEE-eeeccccccCCceeeee
Q 013362 166 SIAFQNHILLCDIVGQRIMRLNRESGVCSN-FQFSNFAILGLPYWFAF 212 (444)
Q Consensus 166 la~~~~~LyIADT~nhRIRkvdl~tG~vST-~~fsg~g~lg~P~~l~~ 212 (444)
++..++.||+.+ ...+|..+|.+||.+-- +.+ +.++...|..+..
T Consensus 402 ~~~~g~~v~~g~-~dG~l~ald~~tG~~lW~~~~-~~~~~a~P~~~~~ 447 (488)
T cd00216 402 LATAGNLVFAGA-ADGYFRAFDATTGKELWKFRT-PSGIQATPMTYEV 447 (488)
T ss_pred eEecCCeEEEEC-CCCeEEEEECCCCceeeEEEC-CCCceEcCEEEEe
Confidence 445678899998 56789999999998743 333 4456677765533
No 127
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=55.81 E-value=21 Score=25.06 Aligned_cols=24 Identities=8% Similarity=0.117 Sum_probs=20.5
Q ss_pred CeEEEEeCCCCeEEEEeCCCCeEEE
Q 013362 171 NHILLCDIVGQRIMRLNRESGVCSN 195 (444)
Q Consensus 171 ~~LyIADT~nhRIRkvdl~tG~vST 195 (444)
|.+|++ +.+.+|..+|.+||.+-=
T Consensus 1 ~~v~~~-~~~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 1 GRVYVG-TPDGYLYALDAKTGKVLW 24 (38)
T ss_dssp TEEEEE-TTTSEEEEEETTTTSEEE
T ss_pred CEEEEe-CCCCEEEEEECCCCCEEE
Confidence 468888 999999999999998743
No 128
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=55.08 E-value=2.5e+02 Score=28.65 Aligned_cols=138 Identities=12% Similarity=0.036 Sum_probs=83.1
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEec-cCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCc
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVY-PTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFP 80 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVA-GtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P 80 (444)
|..+|..+++|+ +.|.=-..|.|-+||..+|.|.=.. |.... .|. . ..+. |..-
T Consensus 145 HiNsV~~~~~G~-yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~--------df~---~---~~~~----------f~~Q 199 (299)
T PF14269_consen 145 HINSVDKDDDGD-YLISSRNTSTIYKIDPSTGKIIWRLGGKRNS--------DFT---L---PATN----------FSWQ 199 (299)
T ss_pred EeeeeeecCCcc-EEEEecccCEEEEEECCCCcEEEEeCCCCCC--------ccc---c---cCCc----------Eeec
Confidence 345677777775 6788888999999999998776544 44111 122 1 1112 5555
Q ss_pred ceeEEc----CCCeEEEEeC----------CCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccc
Q 013362 81 WHLMKS----EDDNLLIINR----------SFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLH 146 (444)
Q Consensus 81 ~gL~~d----~dG~LYIADa----------gnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~ 146 (444)
.+..+. ++++|-+-|- ...+|..+|+.+.+++.+........
T Consensus 200 Hdar~~~~~~~~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~------------------------ 255 (299)
T PF14269_consen 200 HDARFLNESNDDGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPD------------------------ 255 (299)
T ss_pred cCCEEeccCCCCCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCC------------------------
Confidence 555555 5566767666 45677778877665554432110000
Q ss_pred cccccccccCCCcccccccc-cccCCeEEEEeCCCCeEEEEeCCCCeEEEeee
Q 013362 147 QIDSSCSLKELPYAGLISSS-IAFQNHILLCDIVGQRIMRLNRESGVCSNFQF 198 (444)
Q Consensus 147 ~~~~~~~~~Gip~a~~~Sgl-a~~~~~LyIADT~nhRIRkvdl~tG~vST~~f 198 (444)
...+. ...++ ...+++++|+...+.|+.-++.++..+-.++|
T Consensus 256 ---~~~s~-------~~G~~Q~L~nGn~li~~g~~g~~~E~~~~G~vv~~~~f 298 (299)
T PF14269_consen 256 ---GFYSP-------SQGSAQRLPNGNVLIGWGNNGRISEFTPDGEVVWEAQF 298 (299)
T ss_pred ---ccccc-------CCCcceECCCCCEEEecCCCceEEEECCCCCEEEEEEC
Confidence 00000 00011 12368999999999999999988877777665
No 129
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=54.55 E-value=85 Score=34.63 Aligned_cols=34 Identities=9% Similarity=0.080 Sum_probs=30.2
Q ss_pred CCCCcceeEEcCC-CeEEEEeCCCC-------------------EEEEEECCCC
Q 013362 76 SLIFPWHLMKSED-DNLLIINRSFE-------------------TLWIMDLASG 109 (444)
Q Consensus 76 ~Ln~P~gL~~d~d-G~LYIADagnh-------------------~IrkIDl~tG 109 (444)
.|.-|-++.++.. |.||+|.+++. +|+++++..+
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~ 401 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGN 401 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCC
Confidence 4999999998875 89999999998 8999998766
No 130
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=53.17 E-value=2.9e+02 Score=28.95 Aligned_cols=125 Identities=13% Similarity=0.216 Sum_probs=70.9
Q ss_pred cceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362 3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH 82 (444)
Q Consensus 3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g 82 (444)
|--.||||.| .++.+=.++..|+-.|++. .+.|-. . .|. .+.+. ...=.+
T Consensus 143 ~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs------~dkgPF-----~--tf~---i~~~~-------------~~ew~~ 192 (311)
T KOG1446|consen 143 RPIAAFDPEG-LIFALANGSELIKLYDLRS------FDKGPF-----T--TFS---ITDND-------------EAEWTD 192 (311)
T ss_pred CcceeECCCC-cEEEEecCCCeEEEEEecc------cCCCCc-----e--eEc---cCCCC-------------ccceee
Confidence 3446899988 4555555556999999752 111111 0 011 11111 222347
Q ss_pred eEEcCCCeEEEEeCCCCEEEEEECCCCcEE-EeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccc
Q 013362 83 LMKSEDDNLLIINRSFETLWIMDLASGEIK-EAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAG 161 (444)
Q Consensus 83 L~~d~dG~LYIADagnh~IrkIDl~tG~I~-TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~ 161 (444)
|.++++|...+--+.+..|..+|.-+|.+. ++.+ -+. .+ .+|
T Consensus 193 l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~-~~~-----------------------------~~----~~~--- 235 (311)
T KOG1446|consen 193 LEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG-YPN-----------------------------AG----NLP--- 235 (311)
T ss_pred eEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee-ccC-----------------------------CC----Ccc---
Confidence 788889887777778889999999999743 3332 110 00 111
Q ss_pred ccccccccCCeEEEEeCCCCeEEEEeCCCCeEEE
Q 013362 162 LISSSIAFQNHILLCDIVGQRIMRLNRESGVCSN 195 (444)
Q Consensus 162 ~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST 195 (444)
.+-..+.++.-+++=.+..+|-..++++|..-.
T Consensus 236 -~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 236 -LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred -eeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 011123455566666777888888888877544
No 131
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=52.98 E-value=2.2e+02 Score=33.40 Aligned_cols=83 Identities=11% Similarity=0.170 Sum_probs=53.4
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECCCC-eEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH 82 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg-~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g 82 (444)
.|+.+...| ...++-+--..||.-|+... ...|+-..-. .+ | ..
T Consensus 396 t~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~p---------------------~Q----------f---sc 440 (893)
T KOG0291|consen 396 TAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP---------------------IQ----------F---SC 440 (893)
T ss_pred EEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCCc---------------------ee----------e---eE
Confidence 456666666 35566667777888777642 3344332210 01 2 36
Q ss_pred eEEcCCCeEEEEeCC-CCEEEEEECCCCcEEEeecCCccc
Q 013362 83 LMKSEDDNLLIINRS-FETLWIMDLASGEIKEAVKGFSKV 121 (444)
Q Consensus 83 L~~d~dG~LYIADag-nh~IrkIDl~tG~I~TiagG~~~~ 121 (444)
|++|+.|.|.+|-+. +--|.+|+.+||++-.+..|-+.+
T Consensus 441 vavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgP 480 (893)
T KOG0291|consen 441 VAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGP 480 (893)
T ss_pred EEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCc
Confidence 788888887776554 447999999999988887665543
No 132
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=49.89 E-value=4.2e+02 Score=29.82 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=30.0
Q ss_pred CCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeec
Q 013362 77 LIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVK 116 (444)
Q Consensus 77 Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tiag 116 (444)
|..--.|.++.+|...++-..+-+||.+|+++|.++.+-.
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk 440 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK 440 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc
Confidence 4444567788888755555577799999999999987764
No 133
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=49.83 E-value=4.5e+02 Score=30.64 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=54.9
Q ss_pred cCCeEEEEeCCCCeEEEEeCCCCeEE-Eeeeccc-----cccCCc---eeeee-cc---ceeeeccc----ccCCcccce
Q 013362 169 FQNHILLCDIVGQRIMRLNRESGVCS-NFQFSNF-----AILGLP---YWFAF-PL---ERVYAVAG----GHQGSWTDH 231 (444)
Q Consensus 169 ~~~~LyIADT~nhRIRkvdl~tG~vS-T~~fsg~-----g~lg~P---~~l~~-PL---~~v~~~~~----~~~g~~~~~ 231 (444)
.++.||+... ..|+..+|.+||..- .|+..|. ++-..| |.... |+ +.++-.+. .-.+....+
T Consensus 259 ~~~rV~~~T~-Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 259 CARRIILPTS-DARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred cCCEEEEecC-CCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 4667888765 668999999988764 4432110 000111 11122 32 22333221 112234578
Q ss_pred eeeeecCCCeeeEEEeeeCCCCcccccccccceeeeeeccce
Q 013362 232 IQRCSLLPGRIDIKVNVDIPSDTELVESLQEGCIWRQARGTA 273 (444)
Q Consensus 232 i~~v~~~pGri~i~v~v~~P~~~el~~p~~e~ciwrq~rg~~ 273 (444)
|+-+|+.+|++.=+.+..-|..+. |..++=.|. ||.+
T Consensus 338 I~A~Da~TGkl~W~~~~g~p~~~~---~~~~g~~~~--~gg~ 374 (764)
T TIGR03074 338 IRAFDVNTGALVWAWDPGNPDPTA---PPAPGETYT--RNTP 374 (764)
T ss_pred EEEEECCCCcEeeEEecCCCCccc---CCCCCCEec--cCCC
Confidence 999999999999888876665543 333444555 4543
No 134
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=49.18 E-value=73 Score=34.21 Aligned_cols=188 Identities=12% Similarity=0.166 Sum_probs=105.5
Q ss_pred EEEEEeCCCCeEEEEECCCC-eEEEeccCCCcCccCCcchhhhhcccCccc-ccC-ccccCCCCCCCCCcceeEE-----
Q 013362 14 CLYIVDSENHAIRRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFER-DND-TKSEKLDPQSLIFPWHLMK----- 85 (444)
Q Consensus 14 ~LYVADTeNHaIRkIDl~tg-~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~-~a~-~~~~~~~~~~Ln~P~gL~~----- 85 (444)
.+.|.-+....||.-|..+| .+.|+-+-.+.--. + .|. .|.-. -.+ ..+.+ -.|.+|.++++
T Consensus 248 rviisGSSDsTvrvWDv~tge~l~tlihHceaVLh---l-rf~---ng~mvtcSkDrsiaV---Wdm~sps~it~rrVLv 317 (499)
T KOG0281|consen 248 RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLH---L-RFS---NGYMVTCSKDRSIAV---WDMASPTDITLRRVLV 317 (499)
T ss_pred eEEEecCCCceEEEEeccCCchhhHHhhhcceeEE---E-EEe---CCEEEEecCCceeEE---EeccCchHHHHHHHHh
Confidence 58999999999999999887 45666554332000 0 000 00000 000 00000 01445554322
Q ss_pred ---------cCCCeEEEEeCCCCEEEEEECCCCc-EEEeecCCccceeecceehhhhhhhhhcCCccccccccccccccc
Q 013362 86 ---------SEDDNLLIINRSFETLWIMDLASGE-IKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLK 155 (444)
Q Consensus 86 ---------d~dG~LYIADagnh~IrkIDl~tG~-I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~ 155 (444)
+=+..+.|+-++..+|+.++..|++ |+|+.| -.+
T Consensus 318 GHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~g-HkR----------------------------------- 361 (499)
T KOG0281|consen 318 GHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNG-HKR----------------------------------- 361 (499)
T ss_pred hhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhc-ccc-----------------------------------
Confidence 2234677888899999999999987 555553 222
Q ss_pred CCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEeeeccccccCCceeeeeccceeeecccccCCcccceeeee
Q 013362 156 ELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRC 235 (444)
Q Consensus 156 Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~PL~~v~~~~~~~~g~~~~~i~~v 235 (444)
|+++ +...+.|.|+-+....||-.|.++|.+-.+ +.|-..|---..| +.-.-++|+|..+|+=-
T Consensus 362 GIAC-------lQYr~rlvVSGSSDntIRlwdi~~G~cLRv-LeGHEeLvRciRF--------d~krIVSGaYDGkikvW 425 (499)
T KOG0281|consen 362 GIAC-------LQYRDRLVVSGSSDNTIRLWDIECGACLRV-LEGHEELVRCIRF--------DNKRIVSGAYDGKIKVW 425 (499)
T ss_pred ccee-------hhccCeEEEecCCCceEEEEeccccHHHHH-HhchHHhhhheee--------cCceeeeccccceEEEE
Confidence 4444 234778999989999999999999987654 1222222111111 11222466666665555
Q ss_pred ecCCCeeeEEEeeeCCCCcccccccccceeeeeeccceeee
Q 013362 236 SLLPGRIDIKVNVDIPSDTELVESLQEGCIWRQARGTASVV 276 (444)
Q Consensus 236 ~~~pGri~i~v~v~~P~~~el~~p~~e~ciwrq~rg~~~~~ 276 (444)
++..+ ..--.|..+-|.=--+|-+|-.+
T Consensus 426 dl~aa-------------ldpra~~~~~Cl~~lv~hsgRVF 453 (499)
T KOG0281|consen 426 DLQAA-------------LDPRAPASTLCLRTLVEHSGRVF 453 (499)
T ss_pred ecccc-------------cCCcccccchHHHhhhhccceeE
Confidence 54433 23345666677777777776543
No 135
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=45.91 E-value=3.4e+02 Score=27.60 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=27.6
Q ss_pred CCCcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEee
Q 013362 77 LIFPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAV 115 (444)
Q Consensus 77 Ln~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~Tia 115 (444)
++.|.-+. +|.||+.+... +++.+|..+|+..--.
T Consensus 103 ~~~~~~~~---~G~i~~g~~~g-~~y~ld~~~G~~~W~~ 137 (370)
T COG1520 103 LSGPILGS---DGKIYVGSWDG-KLYALDASTGTLVWSR 137 (370)
T ss_pred ccCceEEe---CCeEEEecccc-eEEEEECCCCcEEEEE
Confidence 77777666 58999999777 9999999888765443
No 136
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=44.91 E-value=1e+02 Score=35.99 Aligned_cols=77 Identities=17% Similarity=0.088 Sum_probs=59.1
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECCCCe-EEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMGRRV-LETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH 82 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~-VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g 82 (444)
..+|.|+.|+.+...+-.+-.|...++.+|. +.++.|-- ||- .+
T Consensus 439 scvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE-----------------gPV------------------s~ 483 (893)
T KOG0291|consen 439 SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE-----------------GPV------------------SG 483 (893)
T ss_pred eEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCC-----------------Ccc------------------ee
Confidence 4689999998777777788899999999985 55666652 111 25
Q ss_pred eEEcCCCeEEEEeCCCCEEEEEECCC--CcEEEee
Q 013362 83 LMKSEDDNLLIINRSFETLWIMDLAS--GEIKEAV 115 (444)
Q Consensus 83 L~~d~dG~LYIADagnh~IrkIDl~t--G~I~Tia 115 (444)
|+++..|+++.+-++-.+||+||.-. |++.|+.
T Consensus 484 l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~ 518 (893)
T KOG0291|consen 484 LSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE 518 (893)
T ss_pred eEEccccCeEEeccccceEEEEEeeccCceeeeEe
Confidence 66777889999999999999999754 4787775
No 137
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=43.47 E-value=1.6e+02 Score=33.07 Aligned_cols=27 Identities=30% Similarity=0.192 Sum_probs=23.5
Q ss_pred ceeEEcCCCeEEEEeCCCCEEEEEECC
Q 013362 81 WHLMKSEDDNLLIINRSFETLWIMDLA 107 (444)
Q Consensus 81 ~gL~~d~dG~LYIADagnh~IrkIDl~ 107 (444)
..|.++.+|+.+.+-.+-+.+++||+.
T Consensus 368 tsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 368 TSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred eEEEeccccchhhhccCCCceeeeecc
Confidence 467888889998998899999999986
No 138
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=42.70 E-value=46 Score=23.24 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=17.3
Q ss_pred EEcCCCeEEEEeCCCCEEEEEECCC
Q 013362 84 MKSEDDNLLIINRSFETLWIMDLAS 108 (444)
Q Consensus 84 ~~d~dG~LYIADagnh~IrkIDl~t 108 (444)
++.+ |.|||.+. +++++.+|++|
T Consensus 18 ~v~~-g~vyv~~~-dg~l~ald~~t 40 (40)
T PF13570_consen 18 AVAG-GRVYVGTG-DGNLYALDAAT 40 (40)
T ss_dssp EECT-SEEEEE-T-TSEEEEEETT-
T ss_pred EEEC-CEEEEEcC-CCEEEEEeCCC
Confidence 5555 89999986 88999999864
No 139
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=41.79 E-value=1.5e+02 Score=34.22 Aligned_cols=75 Identities=19% Similarity=0.302 Sum_probs=50.7
Q ss_pred CCCcceeEEcCC-CeEEEEeCCCC-EEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccc
Q 013362 77 LIFPWHLMKSED-DNLLIINRSFE-TLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSL 154 (444)
Q Consensus 77 Ln~P~gL~~d~d-G~LYIADagnh-~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~ 154 (444)
+..|.++++|-. ..+|-+|.-.+ .|.+++.. |..+.+.. ...
T Consensus 566 ~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~-g~~r~~~~-~~~---------------------------------- 609 (877)
T KOG1215|consen 566 ILWPNGLTIDYETDRLYWADAKLDYTIESANMD-GQNRRVVD-SED---------------------------------- 609 (877)
T ss_pred ccCCCcceEEeecceeEEEcccCCcceeeeecC-CCceEEec-ccc----------------------------------
Confidence 667888888764 68999999999 89999876 44333221 000
Q ss_pred cCCCcccccccccccCCeEEEEeCCCCeEEEEeCCCCe
Q 013362 155 KELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRESGV 192 (444)
Q Consensus 155 ~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~ 192 (444)
...| -+++.+.+.+|-.|-.++.+.+.....+.
T Consensus 610 ~~~p-----~~~~~~~~~iyw~d~~~~~~~~~~~~~~~ 642 (877)
T KOG1215|consen 610 LPHP-----FGLSVFEDYIYWTDWSNRAISRAEKHKGS 642 (877)
T ss_pred CCCc-----eEEEEecceeEEeeccccceEeeecccCC
Confidence 0112 24566788899999888877776666653
No 140
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=40.34 E-value=1.2e+02 Score=34.22 Aligned_cols=34 Identities=9% Similarity=-0.019 Sum_probs=28.1
Q ss_pred CCCCcceeEEcCC-CeEEEEeCCCC----------------EEEEEECCCC
Q 013362 76 SLIFPWHLMKSED-DNLLIINRSFE----------------TLWIMDLASG 109 (444)
Q Consensus 76 ~Ln~P~gL~~d~d-G~LYIADagnh----------------~IrkIDl~tG 109 (444)
+|--|-+|++.+. |.+|++.++|. +|.+|-+.++
T Consensus 415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~ 465 (616)
T COG3211 415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATG 465 (616)
T ss_pred cccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCC
Confidence 4889999999985 67999999988 6777777766
No 141
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=39.50 E-value=4.3e+02 Score=26.89 Aligned_cols=113 Identities=13% Similarity=0.180 Sum_probs=62.3
Q ss_pred EcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCcccccc
Q 013362 85 KSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAGLIS 164 (444)
Q Consensus 85 ~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~~~S 164 (444)
...+|.+|+. ..+..|+.+|+.+|.+.---.-... .. .. -+
T Consensus 65 ~~~dg~v~~~-~~~G~i~A~d~~~g~~~W~~~~~~~----~~--------------------------~~--------~~ 105 (370)
T COG1520 65 ADGDGTVYVG-TRDGNIFALNPDTGLVKWSYPLLGA----VA--------------------------QL--------SG 105 (370)
T ss_pred EeeCCeEEEe-cCCCcEEEEeCCCCcEEecccCcCc----ce--------------------------ec--------cC
Confidence 5556899999 4555999999999985411100000 00 00 01
Q ss_pred cccccCCeEEEEeCCCCeEEEEeCCCCeEEEe-eeccccccCCceeeeeccceeeecccccCCcccceeeeeecCCCeee
Q 013362 165 SSIAFQNHILLCDIVGQRIMRLNRESGVCSNF-QFSNFAILGLPYWFAFPLERVYAVAGGHQGSWTDHIQRCSLLPGRID 243 (444)
Q Consensus 165 gla~~~~~LyIADT~nhRIRkvdl~tG~vST~-~fsg~g~lg~P~~l~~PL~~v~~~~~~~~g~~~~~i~~v~~~pGri~ 243 (444)
++....+.||+.+... .+..+|.++|+..-. ...+ . +++...| +...+.-+.++..-|+..++..+|+..
T Consensus 106 ~~~~~~G~i~~g~~~g-~~y~ld~~~G~~~W~~~~~~----~-~~~~~~~---v~~~~~v~~~s~~g~~~al~~~tG~~~ 176 (370)
T COG1520 106 PILGSDGKIYVGSWDG-KLYALDASTGTLVWSRNVGG----S-PYYASPP---VVGDGTVYVGTDDGHLYALNADTGTLK 176 (370)
T ss_pred ceEEeCCeEEEecccc-eEEEEECCCCcEEEEEecCC----C-eEEecCc---EEcCcEEEEecCCCeEEEEEccCCcEE
Confidence 1223367799998888 888899877765332 2222 1 4554443 222222223335567777777777554
Q ss_pred EE
Q 013362 244 IK 245 (444)
Q Consensus 244 i~ 245 (444)
=+
T Consensus 177 W~ 178 (370)
T COG1520 177 WT 178 (370)
T ss_pred EE
Confidence 33
No 142
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=38.82 E-value=2.4e+02 Score=29.92 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=43.3
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCccee
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL 83 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL 83 (444)
.|+++ .|+++||||-.+. .-.+|+.+-.=-++||.... .+|. -|++
T Consensus 132 ygv~v--sGn~aYVadlddg-fLivdvsdpssP~lagrya~-------------~~~d------------------~~~v 177 (370)
T COG5276 132 YGVYV--SGNYAYVADLDDG-FLIVDVSDPSSPQLAGRYAL-------------PGGD------------------THDV 177 (370)
T ss_pred EEEEe--cCCEEEEeeccCc-EEEEECCCCCCceeeeeecc-------------CCCC------------------ceeE
Confidence 35566 6889999997443 44567666666667776533 0010 1788
Q ss_pred EEcCCCeEEEEeCCCCEEEEEECC
Q 013362 84 MKSEDDNLLIINRSFETLWIMDLA 107 (444)
Q Consensus 84 ~~d~dG~LYIADagnh~IrkIDl~ 107 (444)
++++ +.-|+|+..++ +..+|..
T Consensus 178 ~ISG-n~AYvA~~d~G-L~ivDVS 199 (370)
T COG5276 178 AISG-NYAYVAWRDGG-LTIVDVS 199 (370)
T ss_pred EEec-CeEEEEEeCCC-eEEEEcc
Confidence 8888 68899986554 5556654
No 143
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=35.96 E-value=6.4e+02 Score=30.02 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=55.2
Q ss_pred ceeEEcCCCeEEEEeCCCCEEEEEECCCCcE-EEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCc
Q 013362 81 WHLMKSEDDNLLIINRSFETLWIMDLASGEI-KEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPY 159 (444)
Q Consensus 81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~I-~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~ 159 (444)
.||++|.-+.+.|+-..-+-+.-||..++.. ..+--|.+-. ++-+
T Consensus 497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~----------------------------------~iv~ 542 (910)
T KOG1539|consen 497 TGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSIT----------------------------------GIVY 542 (910)
T ss_pred eEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcc----------------------------------eeee
Confidence 5889998888999888888888888876552 2221121110 0000
Q ss_pred cccccc---ccccCCeEEEEeCCCCeEEE-EeCCCCeEEEeeecccc
Q 013362 160 AGLISS---SIAFQNHILLCDIVGQRIMR-LNRESGVCSNFQFSNFA 202 (444)
Q Consensus 160 a~~~Sg---la~~~~~LyIADT~nhRIRk-vdl~tG~vST~~fsg~g 202 (444)
...|+ ++...-.|.+.|...+||.| +---++.++.+.||-.|
T Consensus 543 -hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg 588 (910)
T KOG1539|consen 543 -HRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG 588 (910)
T ss_pred -eehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC
Confidence 01111 22334469999999999866 55578888888888876
No 144
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=32.18 E-value=5.7e+02 Score=27.64 Aligned_cols=109 Identities=14% Similarity=0.106 Sum_probs=56.3
Q ss_pred CcceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccC--CcchhhhhcccCcccccCccccCCCCCCCCC
Q 013362 2 RPAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKN--NSLWAWIMEKLGFERDNDTKSEKLDPQSLIF 79 (444)
Q Consensus 2 ~P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~--~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~ 79 (444)
|--+|.|++.++.|+|.=-+-+.|=+||..++.|.=+.|....-+.. ..++.+. ++.|-..... .-+-.-+..
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~v-d~~G~~~~~~----~~~~~~~~g 346 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPV-DSNGNPIDCG----DGDFDWFWG 346 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB--TTS-B-EBS----SSS----SS
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeee-ccCCceeecc----CCCCccccc
Confidence 45678999977788888888889999999999999777764221110 0011110 1112111110 001112445
Q ss_pred cceeEEcCCC---eEEEEeCCCCE----------------E--EEEECCCCcEEEee
Q 013362 80 PWHLMKSEDD---NLLIINRSFET----------------L--WIMDLASGEIKEAV 115 (444)
Q Consensus 80 P~gL~~d~dG---~LYIADagnh~----------------I--rkIDl~tG~I~Tia 115 (444)
...+.+.++| +|++=|-++.+ + ++||...++++.+-
T Consensus 347 QH~~~~~~~g~~~~l~vFDNg~~r~~~~~~~~~~~~~~Sr~v~Y~Ide~~~T~~~vw 403 (477)
T PF05935_consen 347 QHTAHLIPDGPQGNLLVFDNGNGRGYGQPAYVSPKDNYSRAVEYRIDENKMTVEQVW 403 (477)
T ss_dssp -EEEEE-TTS---SEEEEE--TTGGGS--SSCCG-----EEEEEEEETTTTEEEEEE
T ss_pred ccceEEcCCCCeEEEEEEECCCCCCCCCccccccccccceEEEEEecCCCceEEEEE
Confidence 5667777778 89888877665 2 45677667666555
No 145
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=31.03 E-value=1.7e+02 Score=32.32 Aligned_cols=115 Identities=11% Similarity=0.020 Sum_probs=0.0
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECCC--CeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcc
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMGR--RVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPW 81 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~t--g~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~ 81 (444)
..+.|-+....|+..=.--++|..-+.-+ +.|.|..|-... .+
T Consensus 218 sai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~--------------------Vr--------------- 262 (503)
T KOG0282|consen 218 SAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKP--------------------VR--------------- 262 (503)
T ss_pred chhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhh--------------------hh---------------
Q ss_pred eeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccc
Q 013362 82 HLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAG 161 (444)
Q Consensus 82 gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~ 161 (444)
++.+..+|.=+.+-++-..|+.||..||.+..-..-...+.
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~--------------------------------------- 303 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT--------------------------------------- 303 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCce---------------------------------------
Q ss_pred ccccccccCCeEEEEeCCCCeEEEEeCCCCeE
Q 013362 162 LISSSIAFQNHILLCDIVGQRIMRLNRESGVC 193 (444)
Q Consensus 162 ~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~v 193 (444)
.-..-.++.++|+|=.-+.+||.+|+.+|.+
T Consensus 304 -cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv 334 (503)
T KOG0282|consen 304 -CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV 334 (503)
T ss_pred -eeecCCCCCcEEEEecCCCcEEEEeccchHH
No 146
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=30.17 E-value=1.4e+02 Score=30.21 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=23.5
Q ss_pred CeEEEEeCCCCEEEEEECCCCcEEEee
Q 013362 89 DNLLIINRSFETLWIMDLASGEIKEAV 115 (444)
Q Consensus 89 G~LYIADagnh~IrkIDl~tG~I~Tia 115 (444)
|.||--==...+|-|||+++|+|....
T Consensus 186 G~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 186 GELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred cEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 888877778889999999999987665
No 147
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=29.86 E-value=1.1e+02 Score=22.56 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=19.9
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECCC
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMGR 32 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~t 32 (444)
.++++ .|+.+||||.. +-+..+|..+
T Consensus 5 ~~v~v--~g~yaYva~~~-~Gl~IvDISn 30 (42)
T PF08309_consen 5 RDVAV--SGNYAYVADGN-NGLVIVDISN 30 (42)
T ss_pred EEEEE--ECCEEEEEeCC-CCEEEEECCC
Confidence 56777 67899999775 5678898754
No 148
>PLN00181 protein SPA1-RELATED; Provisional
Probab=29.45 E-value=8.9e+02 Score=27.56 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=24.5
Q ss_pred ceeEEcC-CCeEEEEeCCCCEEEEEECCCCcE
Q 013362 81 WHLMKSE-DDNLLIINRSFETLWIMDLASGEI 111 (444)
Q Consensus 81 ~gL~~d~-dG~LYIADagnh~IrkIDl~tG~I 111 (444)
+.|++++ ++.++++=...+.|+.||+.++..
T Consensus 579 ~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 579 WSIDYSSADPTLLASGSDDGSVKLWSINQGVS 610 (793)
T ss_pred EEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence 5677764 578888888889999999987754
No 149
>PF12601 Rubi_NSP_C: Rubivirus non-structural protein; InterPro: IPR022245 This domain family is found in viruses, and is approximately 70 amino acids in length. The family is found in association with PF05407 from PFAM. The Rubella virus (RUB) nonstructural (NS) protein (NSP) ORF encodes a protease that cleaves the NSP precursor (240 kDa) at a single site to produce two products. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity
Probab=27.66 E-value=25 Score=27.95 Aligned_cols=11 Identities=55% Similarity=1.159 Sum_probs=9.8
Q ss_pred hhhhhhhhhcc
Q 013362 290 GVAQLWYDELD 300 (444)
Q Consensus 290 g~aq~wydeld 300 (444)
|+||.|||+|.
T Consensus 36 glaqayyddle 46 (66)
T PF12601_consen 36 GLAQAYYDDLE 46 (66)
T ss_pred hHHHHhhhhhh
Confidence 78999999985
No 150
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=27.22 E-value=3.3e+02 Score=28.27 Aligned_cols=38 Identities=16% Similarity=0.369 Sum_probs=30.1
Q ss_pred ceeEEcC-CCeEEEEeCCCCEEEEEECCCCcEEEeecCCc
Q 013362 81 WHLMKSE-DDNLLIINRSFETLWIMDLASGEIKEAVKGFS 119 (444)
Q Consensus 81 ~gL~~d~-dG~LYIADagnh~IrkIDl~tG~I~TiagG~~ 119 (444)
-.+.+++ ++.|+.|- |..+|..+|+.+|+|+....|-.
T Consensus 118 Nam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 118 NAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred ceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCc
Confidence 3556674 47788887 99999999999999998776543
No 151
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=26.83 E-value=4.7e+02 Score=26.56 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=21.1
Q ss_pred CCCeEEEEeC-CCCEEEEEECCCCcEEEeecC
Q 013362 87 EDDNLLIINR-SFETLWIMDLASGEIKEAVKG 117 (444)
Q Consensus 87 ~dG~LYIADa-gnh~IrkIDl~tG~I~TiagG 117 (444)
+++-|++++. |...|..++.+++.++-+..|
T Consensus 247 ~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G 278 (353)
T PF00930_consen 247 GNEFLWISERDGYRHLYLYDLDGGKPRQLTSG 278 (353)
T ss_dssp SSEEEEEEETTSSEEEEEEETTSSEEEESS-S
T ss_pred CCEEEEEEEcCCCcEEEEEcccccceeccccC
Confidence 3355777776 667889999888877655544
No 152
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=26.40 E-value=8.6e+02 Score=26.39 Aligned_cols=70 Identities=20% Similarity=0.192 Sum_probs=42.0
Q ss_pred eEEcCCCeEEEEeCCCCEEEEEECCC-CcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCCccc
Q 013362 83 LMKSEDDNLLIINRSFETLWIMDLAS-GEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELPYAG 161 (444)
Q Consensus 83 L~~d~dG~LYIADagnh~IrkIDl~t-G~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip~a~ 161 (444)
+.+.+.+.++.|-+...-+|+|...+ +..+.+.|-... -+||.
T Consensus 154 l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~--ct~G~---------------------------------- 197 (399)
T KOG0296|consen 154 LKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP--CTCGE---------------------------------- 197 (399)
T ss_pred EEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC--ccccc----------------------------------
Confidence 33445567777777777777777776 445544432111 11222
Q ss_pred ccccccccCCeEEEEeCCCCeEEEEeCCCCeE
Q 013362 162 LISSSIAFQNHILLCDIVGQRIMRLNRESGVC 193 (444)
Q Consensus 162 ~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~v 193 (444)
+...+.+++..+. +..||+.|++||..
T Consensus 198 ----f~pdGKr~~tgy~-dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 198 ----FIPDGKRILTGYD-DGTIIVWNPKTGQP 224 (399)
T ss_pred ----ccCCCceEEEEec-CceEEEEecCCCce
Confidence 1223455555555 88999999999965
No 153
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=26.35 E-value=4.1e+02 Score=28.54 Aligned_cols=86 Identities=12% Similarity=0.193 Sum_probs=49.4
Q ss_pred CcceeEEcCC-CeEEEEeCCCCEEEEEECC--CCcEEEee-c-CCccceeecceehhhhhhhhhcCCccccccccccccc
Q 013362 79 FPWHLMKSED-DNLLIINRSFETLWIMDLA--SGEIKEAV-K-GFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCS 153 (444)
Q Consensus 79 ~P~gL~~d~d-G~LYIADagnh~IrkIDl~--tG~I~Tia-g-G~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~ 153 (444)
.|-+.++|++ |.|||++-. .-||+++.+ .+.-.+++ . +..... .-
T Consensus 209 Q~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~-----------------------------aD 258 (381)
T PF02333_consen 209 QPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDGLV-----------------------------AD 258 (381)
T ss_dssp -EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSSB------------------------------S-
T ss_pred cceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecccccccc-----------------------------cC
Confidence 5889999987 899999966 699999986 22222222 1 111100 00
Q ss_pred ccCCCcccccccccccCCeEEEEeCCCCeEEEEeCCC--CeEEEeee
Q 013362 154 LKELPYAGLISSSIAFQNHILLCDIVGQRIMRLNRES--GVCSNFQF 198 (444)
Q Consensus 154 ~~Gip~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~t--G~vST~~f 198 (444)
-.|+.-. .. ....+.|++++..+++...+++++ ..+..|.+
T Consensus 259 vEGlaly---~~-~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~i 301 (381)
T PF02333_consen 259 VEGLALY---YG-SDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFRI 301 (381)
T ss_dssp EEEEEEE---E--CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEEE
T ss_pred ccceEEE---ec-CCCCeEEEEEcCCCCeEEEEecCCCCcccceEEe
Confidence 0111100 00 112457999999999999999875 44666654
No 154
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=25.50 E-value=3.2e+02 Score=30.22 Aligned_cols=70 Identities=13% Similarity=0.154 Sum_probs=46.0
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCccee
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL 83 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL 83 (444)
...++||+| .||.+-+.+..||..|++++...+- |. +-.|+ + ..|
T Consensus 351 ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~---------------Fp-ght~~---------------v---k~i 395 (506)
T KOG0289|consen 351 TSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAK---------------FP-GHTGP---------------V---KAI 395 (506)
T ss_pred EEeeEcCCc-eEEeccCCCceEEEEEcCCcccccc---------------CC-CCCCc---------------e---eEE
Confidence 356788888 6888888999999999887752211 11 11111 1 256
Q ss_pred EEcCCCeEEEEeCCCCEEEEEECCC
Q 013362 84 MKSEDDNLLIINRSFETLWIMDLAS 108 (444)
Q Consensus 84 ~~d~dG~LYIADagnh~IrkIDl~t 108 (444)
.+..+|...+.-+....|+.||+..
T Consensus 396 ~FsENGY~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 396 SFSENGYWLATAADDGSVKLWDLRK 420 (506)
T ss_pred EeccCceEEEEEecCCeEEEEEehh
Confidence 7778777666666666699999864
No 155
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=25.24 E-value=2e+02 Score=31.00 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=49.0
Q ss_pred EEEEEeCCCCeEEEEECCCC-eEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEcC-CCeE
Q 013362 14 CLYIVDSENHAIRRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSE-DDNL 91 (444)
Q Consensus 14 ~LYVADTeNHaIRkIDl~tg-~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~-dG~L 91 (444)
.+.|.-++...||.-++.++ -|.|+.|-- .|++... +|.|
T Consensus 331 kyIVsASgDRTikvW~~st~efvRtl~gHk--------------------------------------RGIAClQYr~rl 372 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTSTCEFVRTLNGHK--------------------------------------RGIACLQYRDRL 372 (499)
T ss_pred ceEEEecCCceEEEEeccceeeehhhhccc--------------------------------------ccceehhccCeE
Confidence 46667777888888887776 466776641 1222211 3789
Q ss_pred EEEeCCCCEEEEEECCCCcEEEeecCCcc
Q 013362 92 LIINRSFETLWIMDLASGEIKEAVKGFSK 120 (444)
Q Consensus 92 YIADagnh~IrkIDl~tG~I~TiagG~~~ 120 (444)
.|+-+..++||.+|...|..-.+..|-++
T Consensus 373 vVSGSSDntIRlwdi~~G~cLRvLeGHEe 401 (499)
T KOG0281|consen 373 VVSGSSDNTIRLWDIECGACLRVLEGHEE 401 (499)
T ss_pred EEecCCCceEEEEeccccHHHHHHhchHH
Confidence 99999999999999999987666665443
No 156
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=24.60 E-value=1.1e+03 Score=26.89 Aligned_cols=90 Identities=10% Similarity=0.042 Sum_probs=60.2
Q ss_pred CcceeEEcCCCeEEEEeCCCCEEEEEECCCCcEEEeecCCccceeecceehhhhhhhhhcCCcccccccccccccccCCC
Q 013362 79 FPWHLMKSEDDNLLIINRSFETLWIMDLASGEIKEAVKGFSKVLEICGVLVMEKVFLLKQMPQDWLLHQIDSSCSLKELP 158 (444)
Q Consensus 79 ~P~gL~~d~dG~LYIADagnh~IrkIDl~tG~I~TiagG~~~~~~~~G~li~~~~a~l~~~~~~~~~~~~~~~~~~~Gip 158 (444)
.-|+++..++.++|+.-.--..++.|+ +...+-+..-+.+. .. ..+.+.|
T Consensus 370 elwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~~--~~-------------------------~~fhpsg-- 419 (626)
T KOG2106|consen 370 ELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDPA--EC-------------------------ADFHPSG-- 419 (626)
T ss_pred ceeeEEcCCChhheeeccCcceEEEcc-CCceeEEEEecCce--eE-------------------------eeccCcc--
Confidence 348999998889999999999999998 33333332211111 00 1111212
Q ss_pred cccccccccccCCeEEEEeCCCCeEEEEeCCCCeEEEeeecccc
Q 013362 159 YAGLISSSIAFQNHILLCDIVGQRIMRLNRESGVCSNFQFSNFA 202 (444)
Q Consensus 159 ~a~~~Sgla~~~~~LyIADT~nhRIRkvdl~tG~vST~~fsg~g 202 (444)
.. .+-...+..++-|++++....+...+..++-+.|+-+|
T Consensus 420 --~v--a~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G 459 (626)
T KOG2106|consen 420 --VV--AVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDG 459 (626)
T ss_pred --eE--EEeeccceEEEEecccceeEEEEecCCceEEEEEcCCC
Confidence 00 01235789999999999999998888889999887776
No 157
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=24.53 E-value=1.5e+02 Score=19.64 Aligned_cols=26 Identities=27% Similarity=0.175 Sum_probs=22.2
Q ss_pred cceeEEcCCCeEEEEeCCCCEEEEEE
Q 013362 80 PWHLMKSEDDNLLIINRSFETLWIMD 105 (444)
Q Consensus 80 P~gL~~d~dG~LYIADagnh~IrkID 105 (444)
.++|++.+++.++++=...+.|+.+|
T Consensus 14 i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 14 INSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEEecccccceeeCCCCEEEEEC
Confidence 46888888888888888999999886
No 158
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=24.46 E-value=5.3e+02 Score=26.82 Aligned_cols=34 Identities=12% Similarity=0.309 Sum_probs=27.0
Q ss_pred eEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEec
Q 013362 5 ASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVY 39 (444)
Q Consensus 5 GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVA 39 (444)
.+-+||.++.|++|- +...|..+|+.+|+++-.+
T Consensus 119 am~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 119 AMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred eeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEE
Confidence 566788888888887 7888888888888887654
No 159
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=23.15 E-value=1.9e+02 Score=29.92 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=14.0
Q ss_pred CeEEEEeCCCCEEEEEECCC
Q 013362 89 DNLLIINRSFETLWIMDLAS 108 (444)
Q Consensus 89 G~LYIADagnh~IrkIDl~t 108 (444)
+.+|..|.+ ..|||+|+.+
T Consensus 222 D~vYaGDl~-GnlwR~dl~~ 240 (335)
T PF05567_consen 222 DRVYAGDLG-GNLWRFDLSS 240 (335)
T ss_dssp -EEEEEETT-SEEEEEE--T
T ss_pred EEEEEEcCC-CcEEEEECCC
Confidence 469999986 7899999963
No 160
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=23.14 E-value=2.8e+02 Score=30.45 Aligned_cols=76 Identities=14% Similarity=-0.011 Sum_probs=50.4
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECCCC-eEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMGRR-VLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH 82 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg-~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g 82 (444)
++++|+++|. |...-.--.-=|.-|+.+| .|-+++|-- ..-.+
T Consensus 307 ~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~-----------------------------------k~I~~ 350 (459)
T KOG0272|consen 307 FSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHI-----------------------------------KEILS 350 (459)
T ss_pred ceeEecCCCc-eeeccCccchhheeecccCcEEEEecccc-----------------------------------cceee
Confidence 4678888873 4433333333466677776 566666642 12257
Q ss_pred eEEcCCCeEEEEeCCCCEEEEEECCCC-cEEEee
Q 013362 83 LMKSEDDNLLIINRSFETLWIMDLASG-EIKEAV 115 (444)
Q Consensus 83 L~~d~dG~LYIADagnh~IrkIDl~tG-~I~Tia 115 (444)
|.++++|....+-.+-+++++||+.-. .+.+|.
T Consensus 351 V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip 384 (459)
T KOG0272|consen 351 VAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP 384 (459)
T ss_pred EeECCCceEEeecCCCCcEEEeeecccccceecc
Confidence 889999999999999999999998632 344444
No 161
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=22.28 E-value=5.7e+02 Score=25.76 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=25.5
Q ss_pred CCEEEEEeCCCCeEEEE-ECCCCeEEEeccCC
Q 013362 12 DDCLYIVDSENHAIRRA-DMGRRVLETVYPTS 42 (444)
Q Consensus 12 g~~LYVADTeNHaIRkI-Dl~tg~VtTVAGtG 42 (444)
...||--|+.+.++-+. .+.+|++.+|..-|
T Consensus 144 ~TtLy~ID~~~~~Lv~Q~ppN~GtL~~vG~LG 175 (236)
T PF14339_consen 144 STTLYDIDTTLDALVTQNPPNDGTLNTVGPLG 175 (236)
T ss_pred ceEEEEEecCCCeEEEecCCCCCcEEeeeccc
Confidence 46899999999988888 66789999887655
No 162
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.14 E-value=1.9e+02 Score=32.09 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=38.2
Q ss_pred CCeEEEEeCCCCeEEEeeeccccccCCceeeeec----------cceeeecccccCCcccceeeeeecCCCeeeEEEeee
Q 013362 180 GQRIMRLNRESGVCSNFQFSNFAILGLPYWFAFP----------LERVYAVAGGHQGSWTDHIQRCSLLPGRIDIKVNVD 249 (444)
Q Consensus 180 nhRIRkvdl~tG~vST~~fsg~g~lg~P~~l~~P----------L~~v~~~~~~~~g~~~~~i~~v~~~pGri~i~v~v~ 249 (444)
-+.|.|+|++||......|.--+-.+-|...-.| |..+|+...--+.=..=.-+++..-| .|.+.+..-
T Consensus 398 ~~~l~k~D~~tg~~~~~~~g~~~y~~E~vfvPrpg~~~EdDGwLl~~vyd~~~~~Sel~v~DA~~~~~ep-Ia~l~Lp~~ 476 (490)
T COG3670 398 LQTLAKHDLETGTSQVYSFGPRGYGSEPVFVPRPGSSAEDDGWLLTLVYDGDRHASELLVFDAQRVTAEP-IARLALPQR 476 (490)
T ss_pred cceeEEEeccCCcEEEEecCCCCcccccccccCCCCCcCCCcEEEEEEEecCCCcceEEEEecccCCCCc-ceEEecccc
Confidence 3459999999999999876554433333333333 45566555321211111222221111 355555556
Q ss_pred CCCCc
Q 013362 250 IPSDT 254 (444)
Q Consensus 250 ~P~~~ 254 (444)
||.++
T Consensus 477 vP~gf 481 (490)
T COG3670 477 VPYGF 481 (490)
T ss_pred ccccc
Confidence 66654
No 163
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=22.07 E-value=7.3e+02 Score=27.30 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=28.6
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEec
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVY 39 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVA 39 (444)
+.+.|+.+| .+++.-....+||.+|..+|+|--.+
T Consensus 177 ~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 177 YSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred EEEEeccCC-ceeeeecccceeEEEcCCCCcEeeec
Confidence 456777677 58888889999999999999876655
No 164
>PLN00181 protein SPA1-RELATED; Provisional
Probab=21.92 E-value=1.2e+03 Score=26.51 Aligned_cols=30 Identities=17% Similarity=0.167 Sum_probs=21.9
Q ss_pred ceeEE-cCCCeEEEEeCCCCEEEEEECCCCc
Q 013362 81 WHLMK-SEDDNLLIINRSFETLWIMDLASGE 110 (444)
Q Consensus 81 ~gL~~-d~dG~LYIADagnh~IrkIDl~tG~ 110 (444)
..+.+ ..+|.++++-..++.|+.||+.++.
T Consensus 621 ~~v~~~~~~g~~latgs~dg~I~iwD~~~~~ 651 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSADHKVYYYDLRNPK 651 (793)
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 44555 3347788888889999999987654
No 165
>smart00284 OLF Olfactomedin-like domains.
Probab=21.75 E-value=7.7e+02 Score=25.06 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=46.8
Q ss_pred CEEEEEeCCCCeEEEEECCCCeEEEec--cCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEEcCCCe
Q 013362 13 DCLYIVDSENHAIRRADMGRRVLETVY--PTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMKSEDDN 90 (444)
Q Consensus 13 ~~LYVADTeNHaIRkIDl~tg~VtTVA--GtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~d~dG~ 90 (444)
+.||.-=..++.|-|.|+.+++|.... +.... .+...+.|. . .+=.++++|.+|-
T Consensus 84 gslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y--~~~~~Y~~~-----~----------------~sdiDlAvDE~GL 140 (255)
T smart00284 84 GSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGY--NNRFPYAWG-----G----------------FSDIDLAVDENGL 140 (255)
T ss_pred ceEEEEecCCccEEEEECCCCcEEEEEecCcccc--ccccccccC-----C----------------CccEEEEEcCCce
Confidence 479998888899999999999986332 22101 000011111 0 1114888998663
Q ss_pred --EEEEeCCCCEEE--EEECCCCcEEEee
Q 013362 91 --LLIINRSFETLW--IMDLASGEIKEAV 115 (444)
Q Consensus 91 --LYIADagnh~Ir--kIDl~tG~I~Tia 115 (444)
||-+..+++.|- |+|+.|=.|...-
T Consensus 141 WvIYat~~~~g~ivvSkLnp~tL~ve~tW 169 (255)
T smart00284 141 WVIYATEQNAGKIVISKLNPATLTIENTW 169 (255)
T ss_pred EEEEeccCCCCCEEEEeeCcccceEEEEE
Confidence 444455545454 8999887665443
No 166
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=21.46 E-value=3.6e+02 Score=31.43 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=50.7
Q ss_pred EEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcceeEE
Q 013362 6 SFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHLMK 85 (444)
Q Consensus 6 Ia~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL~~ 85 (444)
+++++.|+.||-+ .+.+|-.+|..++.+. ...|.. ++ ...=.++++
T Consensus 25 ~~~s~nG~~L~t~--~~d~Vi~idv~t~~~~--l~s~~~------------ed------------------~d~ita~~l 70 (775)
T KOG0319|consen 25 VAWSSNGQHLYTA--CGDRVIIIDVATGSIA--LPSGSN------------ED------------------EDEITALAL 70 (775)
T ss_pred eeECCCCCEEEEe--cCceEEEEEccCCcee--cccCCc------------cc------------------hhhhheeee
Confidence 7889999988875 4689999999999886 222211 00 111135566
Q ss_pred cCCCeEEEEeCCCCEEEEEECCCCcE
Q 013362 86 SEDDNLLIINRSFETLWIMDLASGEI 111 (444)
Q Consensus 86 d~dG~LYIADagnh~IrkIDl~tG~I 111 (444)
.+|+...++=..+..+|.+++.+|++
T Consensus 71 ~~d~~~L~~a~rs~llrv~~L~tgk~ 96 (775)
T KOG0319|consen 71 TPDEEVLVTASRSQLLRVWSLPTGKL 96 (775)
T ss_pred cCCccEEEEeeccceEEEEEcccchH
Confidence 67667777777888999999999864
No 167
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=21.24 E-value=97 Score=34.16 Aligned_cols=72 Identities=8% Similarity=-0.018 Sum_probs=53.8
Q ss_pred cceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCcce
Q 013362 3 PAASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWH 82 (444)
Q Consensus 3 P~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~g 82 (444)
|+|...|. ++.-.+.|-.-|-++|.++..+.+-...|.|.. .|..+. - +..|..
T Consensus 170 hyg~t~df-~~~~d~TgV~mH~t~kp~pkla~~~L~l~~~tv--------------p~~~~~-~----------f~~~ts 223 (501)
T KOG3567|consen 170 HYGLTIDF-DGNYDVTGVGMHQTEKPQPKLAKTMLLLGDGTV--------------PGEGTK-H----------FETPTS 223 (501)
T ss_pred ccccccCC-CCCcccccceeeeeccCCchhhceEEeecCCcc--------------CCCCcc-c----------cCCCce
Confidence 67777776 447899999999999999887666555555433 122221 2 888999
Q ss_pred eEEcCCCeEEEEeCCCCE
Q 013362 83 LMKSEDDNLLIINRSFET 100 (444)
Q Consensus 83 L~~d~dG~LYIADagnh~ 100 (444)
+++-+++.+.++|...|+
T Consensus 224 c~v~~n~~ihvfa~r~hT 241 (501)
T KOG3567|consen 224 CAVEENGPIHVFAYRCHT 241 (501)
T ss_pred EEEecCcceeeEEeeeee
Confidence 999999999999987764
No 168
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=21.13 E-value=8.4e+02 Score=25.96 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=23.8
Q ss_pred eeEEcCC--CeEEEEeCCCCEEEEEECCCCcEEEee
Q 013362 82 HLMKSED--DNLLIINRSFETLWIMDLASGEIKEAV 115 (444)
Q Consensus 82 gL~~d~d--G~LYIADagnh~IrkIDl~tG~I~Tia 115 (444)
.|.+..+ -.||.++.++..|..+|+.||+...-.
T Consensus 293 Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 293 SIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred eEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 5666554 368888999999999999999754433
No 169
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=20.75 E-value=1.1e+03 Score=25.82 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=26.4
Q ss_pred ceeEEcCCCeEEEEeCCCCEEEEEECCCCc
Q 013362 81 WHLMKSEDDNLLIINRSFETLWIMDLASGE 110 (444)
Q Consensus 81 ~gL~~d~dG~LYIADagnh~IrkIDl~tG~ 110 (444)
..|++++||....+-.-++.|+.+|+.+|+
T Consensus 161 lcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 161 LCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred EEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 356778899999999999999999999986
No 170
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=20.37 E-value=7.9e+02 Score=26.38 Aligned_cols=80 Identities=11% Similarity=0.143 Sum_probs=51.1
Q ss_pred ceEEEecCCCEEEEEeCCCCeEEEEECCCCeEEEeccCCCcCccCCcchhhhhcccCcccccCccccCCCCCCCCCccee
Q 013362 4 AASFYHKDDDCLYIVDSENHAIRRADMGRRVLETVYPTSGISKKNNSLWAWIMEKLGFERDNDTKSEKLDPQSLIFPWHL 83 (444)
Q Consensus 4 ~GIa~D~~g~~LYVADTeNHaIRkIDl~tg~VtTVAGtG~~~~~~~~l~g~~~~~~G~a~~a~~~~~~~~~~~Ln~P~gL 83 (444)
..|.++|.|+.| .+-|.-..+|..|..+-.. ++... + + ++- +.+ + ..|
T Consensus 220 rsiSfHPsGefl-lvgTdHp~~rlYdv~T~Qc--fvsan-P------------d-~qh-t~a-----------i---~~V 267 (430)
T KOG0640|consen 220 RSISFHPSGEFL-LVGTDHPTLRLYDVNTYQC--FVSAN-P------------D-DQH-TGA-----------I---TQV 267 (430)
T ss_pred eeEeecCCCceE-EEecCCCceeEEeccceeE--eeecC-c------------c-ccc-ccc-----------e---eEE
Confidence 357889998644 4457777888888654332 22211 1 0 000 000 1 356
Q ss_pred EEcCCCeEEEEeCCCCEEEEEECCCCc-EEEee
Q 013362 84 MKSEDDNLLIINRSFETLWIMDLASGE-IKEAV 115 (444)
Q Consensus 84 ~~d~dG~LYIADagnh~IrkIDl~tG~-I~Tia 115 (444)
.+++.|.|||.-+..+.|+.||-.++. |+||.
T Consensus 268 ~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~ 300 (430)
T KOG0640|consen 268 RYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG 300 (430)
T ss_pred EecCCccEEEEeccCCcEEeeccccHHHHHHHH
Confidence 778889999999999999999976664 45554
Done!