BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013363
         (444 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FMM|E Chain E, Crystal Structure Of Emsy-Hp1 Complex
          Length = 133

 Score = 39.3 bits (90), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 54 IHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHR 99
          +  +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR
Sbjct: 14 LRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHR 58


>pdb|1UTU|A Chain A, Crystal Structure Of Novel Protein Emsy Truncate
 pdb|1UTU|B Chain B, Crystal Structure Of Novel Protein Emsy Truncate
          Length = 108

 Score = 38.5 bits (88), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 54 IHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHR 99
          +  +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR
Sbjct: 20 LRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHR 64


>pdb|1UZ3|A Chain A, Crystal Structure Of Novel Protein Emsy
 pdb|1UZ3|B Chain B, Crystal Structure Of Novel Protein Emsy
          Length = 102

 Score = 38.5 bits (88), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 54 IHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHR 99
          +  +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR
Sbjct: 22 LRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHR 66


>pdb|3SXZ|A Chain A, Metal-Free Fcd Domain Of Tm0439 A Putative Transcriptional
           Regulator
 pdb|3SXZ|B Chain B, Metal-Free Fcd Domain Of Tm0439 A Putative Transcriptional
           Regulator
          Length = 140

 Score = 28.1 bits (61), Expect = 9.9,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 78  WEKESLITELRKELRVSDEEHRELLSKVNADD 109
           W++  L+  L +   VS+ EH+EL+ ++ + D
Sbjct: 83  WDRIDLVRHLNERYVVSNREHKELIERIISGD 114


>pdb|3SXK|A Chain A, Zn2+-Bound Fcd Domain Of Tm0439, A Putative
           Transcriptional Regulator
 pdb|3SXK|B Chain B, Zn2+-Bound Fcd Domain Of Tm0439, A Putative
           Transcriptional Regulator
 pdb|3SXM|A Chain A, Metal-Free Fcd Domain Of Tm0439 A Putative Transcriptional
           Regulator
 pdb|3SXM|B Chain B, Metal-Free Fcd Domain Of Tm0439 A Putative Transcriptional
           Regulator
          Length = 140

 Score = 28.1 bits (61), Expect = 9.9,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 78  WEKESLITELRKELRVSDEEHRELLSKVNADD 109
           W++  L+  L +   VS+ EH+EL+ ++ + D
Sbjct: 83  WDRIDLVRHLNERYVVSNREHKELIERIISGD 114


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.128    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,141,954
Number of Sequences: 62578
Number of extensions: 517932
Number of successful extensions: 1079
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1071
Number of HSP's gapped (non-prelim): 10
length of query: 444
length of database: 14,973,337
effective HSP length: 102
effective length of query: 342
effective length of database: 8,590,381
effective search space: 2937910302
effective search space used: 2937910302
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (25.0 bits)