BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013364
(444 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DBG7|SRPR_MOUSE Signal recognition particle receptor subunit alpha OS=Mus musculus
GN=Srpr PE=1 SV=1
Length = 636
Score = 217 bits (552), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 153/470 (32%), Positives = 242/470 (51%), Gaps = 59/470 (12%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S DF
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 112 MFRQLRKEAEARAE--------ELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
F +L +EAE ++ + + S++ KP+ ++ + G+ K E+ N
Sbjct: 116 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKTK---EKAKN------ 166
Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNK 223
+ RG K E + + + +G++ G EN + K ++ K
Sbjct: 167 -------NKKRGAKKEGSDGTLATSKTAPAEKSGLSAGPENGELSKEELIRRKREEFIQK 219
Query: 224 GGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAGGNGS---------N 272
GK D + PK+K K RVW+ +K LD++ P NG+ N
Sbjct: 220 HGKGLDKSSKSTKSDTPKEKGKKAPRVWELGGCANKEVLDYSTPTT-NGTPEAALSEDIN 278
Query: 273 IEVEAADHGESMMDKEEVFSSDSESEEDEEVGKHNKPDAKK--TGWFSSMFQSIAGKANL 330
+ + G + D D S +DE ++ KP A K G M + + G +L
Sbjct: 279 L-IRGTGPGGQLQD------LDCSSSDDEGATQNTKPSATKGTLGGMFGMLKGLVGSKSL 331
Query: 331 DKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEAL 390
+ D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S V+ A++E+L
Sbjct: 332 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 391
Query: 391 VRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440
V+IL P+R +D+LRD+ A+ +++PYVV F GVNGVGKSTNLAK+ +L
Sbjct: 392 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLL 441
>sp|Q9U5L1|SRPR_DROME Signal recognition particle receptor subunit alpha homolog
OS=Drosophila melanogaster GN=Gtp-bp PE=1 SV=2
Length = 614
Score = 207 bits (528), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 153/446 (34%), Positives = 231/446 (51%), Gaps = 42/446 (9%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ ++IFT+GG++LW GN+ S I++LIR +LEER+ A + Y+ A ++
Sbjct: 1 MLDFVVIFTKGGVVLWHSNASGNSF-ASCINSLIRGVILEERNTEAKY-YEEDHLA--VQ 56
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY-DPKRTDYSDFDEMFRQLRKE 119
+ NEL LV+ A++Q+++ L Y+D LA M+ +F E Y D + D DFD +R++
Sbjct: 57 FKLDNELDLVYAAIFQKVIKLNYLDGFLADMQAAFKEKYGDIRLGDDYDFDREYRRVLSA 116
Query: 120 AEARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSDNMRGRKLE 179
AE + + K+ + + N +K S ++ DD R
Sbjct: 117 AEEASAKQVKAPKTMRSYNESQK-------------SKKTVASMIQDDKKPVEKR----- 158
Query: 180 NGHSNVGNVEIEESRVTGVANGKEN-TSSNIGAFDVSKLQKLRNKGGKKTDTVVSKGSNP 238
V I+E+ + T S + + K +KLR K T S
Sbjct: 159 --------VNIQEAPPPSKSQPSSPPTGSPMDKIIMEKRRKLREKL-TPTKKTSPSDSKS 209
Query: 239 DPKKKITKKNRVWD---DSPPESKLDFT--DPAGGNGSNIEVEAADHGESMMDKEEVFSS 293
+K KK RVWD +S + LD + P NI E + ++ +V S
Sbjct: 210 SKPEKAGKKPRVWDLGGNSKDAALLDRSRDSPDDVQYQNINSELVGTMQGVIRDLDVESE 269
Query: 294 DSESEEDE----EVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTK 349
D ED E + + K G S F+ I G + ADL+PAL+ ++D L++K
Sbjct: 270 DEADNEDASSEGEAEEQVQSKKGKRGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLISK 329
Query: 350 NVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAA 409
NVA EIA KLC+SVAASL+GK++ +F I+S V+ A+ E+LVRIL+P+R IDI+RD +
Sbjct: 330 NVASEIAAKLCDSVAASLDGKQMGTFDSIASQVKEALTESLVRILSPKRRIDIIRDALES 389
Query: 410 KEQRKPYVVVFVGVNGVGKSTNLAKV 435
K +PY ++F GVNGVGKSTNLAK+
Sbjct: 390 KRNGRPYTIIFCGVNGVGKSTNLAKI 415
>sp|Q3MHE8|SRPR_BOVIN Signal recognition particle receptor subunit alpha OS=Bos taurus
GN=SRPR PE=2 SV=1
Length = 639
Score = 199 bits (506), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 150/474 (31%), Positives = 240/474 (50%), Gaps = 64/474 (13%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S DF
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 112 MFRQLRKEAEARAE--------ELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
F +L +EAE ++ + + S++ KP+ ++ + G+ K + G
Sbjct: 116 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNNKKNKGAKK 175
Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLR-- 221
DG + E +G+ G EN ++SK +++R
Sbjct: 176 EGSDGPLATSKAAPAEK---------------SGLPVGPENGE------ELSKEEQIRRK 214
Query: 222 -----NKGGKKTDTVVSKGSNPDPKKKITKKNRVW--DDSPPESKLDFTDPAGGNGSNIE 274
K G+ + + PK+K K RVW S + LD++ P +N
Sbjct: 215 REEFIQKHGRGMEKSSKSSKSDAPKEKGKKAPRVWALGGSANKEVLDYSTPT----TNGA 270
Query: 275 VEAADHGESMMDK-----EEVFSSDSESEEDEEVGKHN-KPDAKK--TGWFSSMFQSIAG 326
EAA + + + ++ D S +DE +++ KP A K G M + + G
Sbjct: 271 PEAAPPEDINLIRGTGPGRQLQDLDCSSSDDEGAAQNSTKPSATKGTLGGMFGMLKGLVG 330
Query: 327 KANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAM 386
+L + D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S V+ A+
Sbjct: 331 SKSLTREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQAL 390
Query: 387 EEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440
+E+LV+IL P+R +D+LRD+ A+ ++PYVV F GVNGVGKSTNLAK+ +L
Sbjct: 391 QESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLL 444
>sp|P06625|SRPR_CANFA Signal recognition particle receptor subunit alpha OS=Canis
familiaris GN=SRPR PE=2 SV=2
Length = 638
Score = 197 bits (500), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 153/480 (31%), Positives = 244/480 (50%), Gaps = 77/480 (16%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS------------- 107
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 108 DFDEMFRQLRKEAEARA----EELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
DF + R+ + ++ RA ++ + S++ KP+ ++ + G+ K + +
Sbjct: 116 DFLRLLREREESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKE 175
Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNK 223
++D L G + V E+S G+ G EN ++SK + +R K
Sbjct: 176 SSDG---------PLATGKA----VPAEKS---GLPAGPEN------GVELSKEELIRRK 213
Query: 224 ----------GGKKTDTVVSKGSNPD-PKKKITKKNRVWDDSPPESK--LDFTDPAGGNG 270
G +K+ SK + D PK+K K RVW +K LD++ P
Sbjct: 214 REEFIQKHGRGLEKS----SKSTKSDAPKEKGKKAPRVWALGGCANKEVLDYSAPTTNGA 269
Query: 271 SNIE-------VEAADHGESMMDKEEVFSSDSESEEDEEVGKH-NKPDAKK--TGWFSSM 320
+ + G + D D S +DEE ++ +KP A K G M
Sbjct: 270 PDAAPPEDINLIRGTGPGGQLQDL------DCSSSDDEETAQNASKPSATKGTLGGMFGM 323
Query: 321 FQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISS 380
+ + G +L + D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S
Sbjct: 324 LKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTS 383
Query: 381 IVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440
V+ A++E+LV+IL P+R +D+LRD+ A+ ++PYVV F GVNGVGKSTNLAK+ +L
Sbjct: 384 TVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLL 443
>sp|P08240|SRPR_HUMAN Signal recognition particle receptor subunit alpha OS=Homo sapiens
GN=SRPR PE=1 SV=2
Length = 638
Score = 194 bits (494), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 151/470 (32%), Positives = 239/470 (50%), Gaps = 57/470 (12%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S DF
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 112 MFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSD 171
F +L +EAE +S ++ P K + + K R + G + +
Sbjct: 116 DFLRLLREAE-------ESSKIRAPTTMKKFEDSEKAKKPV-RSMIETRGEKPKEKAKNS 167
Query: 172 NMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLR-------NKG 224
+G K E + + + +G+ G EN ++SK + +R K
Sbjct: 168 KKKGAKKEGSDGPLATSKPVPAEKSGLPVGPEN------GVELSKEELIRRKREEFIQKH 221
Query: 225 GKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAGGNGS---------NI 273
G+ + + PK+K K RVW+ +K LD++ P NG+ N+
Sbjct: 222 GRGMEKSNKSTKSDAPKEKGKKAPRVWELGGCANKEVLDYSTPTT-NGTPEAALSEDINL 280
Query: 274 EVEAADHGESMMDKEEVFSSDSESEEDEEVGKHN-KPDAKK--TGWFSSMFQSIAGKANL 330
+ G + D D S +DE +++ KP A K G M + + G +L
Sbjct: 281 -IRGTGSGGQLQDL------DCSSSDDEGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSL 333
Query: 331 DKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEAL 390
+ D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S V+ A++E+L
Sbjct: 334 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 393
Query: 391 VRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440
V+IL P+R +D+LRD+ A+ +++PYVV F GVNGVGKSTNLAK+ +L
Sbjct: 394 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLL 443
>sp|Q54ZR7|SRPR_DICDI Signal recognition particle receptor subunit alpha OS=Dictyostelium
discoideum GN=srpr PE=3 SV=1
Length = 615
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 86/125 (68%), Gaps = 1/125 (0%)
Query: 311 AKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGK 370
AK F F + G +DK DLEP L K L KNVA ++A+K+ +S+ LEGK
Sbjct: 304 AKPVSGFMKYFNVLTGNRVIDKQDLEPILADFKLHLTKKNVAPDVADKIVQSIGTGLEGK 363
Query: 371 KLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKST 430
KLA+F ++S+V+ ME+ + RILTP+R+IDILR+V A K +R PY +VF GVNGVGKST
Sbjct: 364 KLATFQGVTSVVKQQMEDTITRILTPKRNIDILREVQAVKGKR-PYSIVFSGVNGVGKST 422
Query: 431 NLAKV 435
NLAKV
Sbjct: 423 NLAKV 427
>sp|P32916|SRPR_YEAST Signal recognition particle receptor subunit alpha homolog
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SRP101 PE=1 SV=2
Length = 621
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 130/241 (53%), Gaps = 25/241 (10%)
Query: 218 QKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPE--SKLDFTDPAGGNGSNIEV 275
+KLR+ GKK T N +K + + D+ E +KLDF+ N S + +
Sbjct: 189 KKLRDTKGKKQST-----GNVGSGRKWGRDGGMLDEMNHEDAAKLDFSSSNSHNSSQVAL 243
Query: 276 EAADHGESMMDKEEVFS------SDSESEEDEEVGKHNKPDAKKTGWFSSMF----QSIA 325
++ + +S D+ E D S +E+ N +AK +G+ S+ F + +
Sbjct: 244 DSTINKDSFGDRTEGGDFLIKEIDDLLSSHKDEITSGN--EAKNSGYVSTAFGFLQKHVL 301
Query: 326 GKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAA 385
G ++++DL+ L+ L +L+TKNVA E A+ L + V+ L G K A++T + + + +
Sbjct: 302 GNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENTARES 361
Query: 386 MEEALVRILTPRRSIDILRDVHAAKEQR------KPYVVVFVGVNGVGKSTNLAKVKLII 439
+ +AL +ILTP S+D+LR++ + + ++ PYV VGVNGVGKSTNL+K+ +
Sbjct: 362 LTKALTQILTPGVSVDLLREIQSKRSKKDEEGKCDPYVFSIVGVNGVGKSTNLSKLAFWL 421
Query: 440 L 440
L
Sbjct: 422 L 422
>sp|O43032|SRPR_SCHPO Signal recognition particle receptor subunit alpha homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=srp101 PE=3 SV=1
Length = 547
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Query: 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQ 383
I GK L + DL P LK +++ L KNVA IA +LCESV ASL KK+ SF + + V
Sbjct: 251 IGGKY-LKEEDLSPILKQMQEHLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTVN 309
Query: 384 AAMEEALVRILTPRRSIDILRDVHAA-KEQRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440
A + L +ILTP S+D+L + + K + +PY + +GVNGVGKST LAK+ +L
Sbjct: 310 KAFRDRLTQILTPSTSLDLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLL 367
Score = 40.0 bits (92), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 15/123 (12%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLL-EERSGLASFNYDSAGAAYTL 59
M++ I +GG++LW K+ + + + L L E+R+ + +D YT+
Sbjct: 1 MIDLFAIVNKGGIVLW--KKTNSLVNLKCLQVLFHEAFLSEQRTVNNTVTFDR----YTM 54
Query: 60 KWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKE 119
++ + +VFV V+Q + + Y LL F ++ K D RQ+ E
Sbjct: 55 QYQEATQYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED--------RQVPNE 106
Query: 120 AEA 122
AE
Sbjct: 107 AEV 109
>sp|P27414|FTSY_SULAC Signal recognition particle receptor FtsY OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=ftsY PE=3 SV=1
Length = 369
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 79/134 (58%), Gaps = 8/134 (5%)
Query: 302 EVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCE 361
+ G+ NK + K+ S F + K + + DL ++ L+ +L+ +V+ E+ EK+ E
Sbjct: 68 QTGQENKQENKR-----SFFDFLKYKT-IKEDDLNDVIEELRFQLLDSDVSYEVTEKILE 121
Query: 362 SVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFV 421
+ +L GKK++ + IV +++++ ILT + D++ + ++ +KP+V++F
Sbjct: 122 DLKNNLIGKKVSRREEVEEIVINTLKKSITEILTKNQKTDLIEKIRSSG--KKPFVIIFF 179
Query: 422 GVNGVGKSTNLAKV 435
GVNGVGK+T +AKV
Sbjct: 180 GVNGVGKTTTIAKV 193
>sp|Q57739|FTSY_METJA Signal recognition particle receptor FtsY OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=ftsY PE=3 SV=1
Length = 409
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
Query: 334 DLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI 393
D+E L+ L+ L+ +VA E+ EKL E++ L G+K++ + I A++ A+ I
Sbjct: 122 DIEDVLEELEIALLEADVALEVVEKLIENIKNELVGRKISPDDNVEEITINAVKNAIKNI 181
Query: 394 LTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435
L+ + IDI + K + KP V+VFVG+NG GK+T +AK+
Sbjct: 182 LSQEK-IDIEEIIKKNKAEGKPTVIVFVGINGTGKTTTIAKL 222
>sp|Q8TIN7|FTSY_METAC Signal recognition particle receptor FtsY OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=ftsY PE=3 SV=1
Length = 417
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 65/108 (60%), Gaps = 8/108 (7%)
Query: 330 LDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEG--KKLASFTRISSIVQAAME 387
LD DLE L L+ L+ ++A ++E + ESV L G K++ S T IV+AA++
Sbjct: 140 LDNKDLEEPLWELEMGLLESDLALSVSEAIVESVKNQLTGTTKRIGSNT--GEIVEAALK 197
Query: 388 EALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435
+A++ +++ + D V K + KP +VFVG+NG GK+T+++K+
Sbjct: 198 KAILEVVSAN-TFDFDEYV---KNREKPVHIVFVGINGTGKTTSISKI 241
>sp|D4GYW6|FTSY_HALVD Signal recognition particle receptor FtsY OS=Haloferax volcanii
(strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 /
NCIMB 2012 / VKM B-1768 / DS2) GN=ftsY PE=3 SV=1
Length = 456
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
Query: 297 SEEDEEVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIA 356
+EEDE+ D+ G GK +++ DLE L L+ L+ +V ++A
Sbjct: 151 TEEDED-------DSSGPGRLRRAAAFATGKVVIEEEDLEDPLWELEMALLQSDVEMQVA 203
Query: 357 EKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPY 416
E++ E++ L G+ +V A+ +AL +++ + D + + E KP
Sbjct: 204 EEILETIREKLIGETRKQVESTGQLVSEALHDALYEVISVGQ-FDFDQRI---AEADKPV 259
Query: 417 VVVFVGVNGVGKSTNLAKV 435
++F G+NGVGK+T +AK+
Sbjct: 260 TLIFTGINGVGKTTTIAKL 278
>sp|O33010|FTSY_MYCLE Signal recognition particle receptor FtsY OS=Mycobacterium leprae
(strain TN) GN=ftsY PE=3 SV=1
Length = 430
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 26/201 (12%)
Query: 256 PESKLDFTD-PAGGNGSNIEVEAADHGES--MMDKEEVFSSDSESEE-----DEEVGKHN 307
P ++D + PA G+ + + ++ H S ++ + E+ +S E E D V
Sbjct: 70 PADRIDTGELPAVGDDATVPRDSPRHTISDVLLPESELITSPDEPEAAVPHIDAIVPPEG 129
Query: 308 KPD------AKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCE 361
+ D A+ F + +LD E + + L+D L+ + + E
Sbjct: 130 RLDRLRGRLARTQNAFGRSILGLIVGGDLD----EDSWQELEDTLLVAD----LGPVATE 181
Query: 362 SVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFV 421
SV ++L + L S S + + + L+ L P D+ R + A P V++ V
Sbjct: 182 SVMSALRSRLLNSNVHTESDARTMLRDVLISELQP----DMDRSIRALPHADHPAVLLIV 237
Query: 422 GVNGVGKSTNLAKVKLIILID 442
GVNG GK+T + K+ +++ D
Sbjct: 238 GVNGTGKTTTVGKLARVLVAD 258
>sp|A3MWX6|SRP54_PYRCJ Signal recognition particle 54 kDa protein OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=srp54 PE=3 SV=1
Length = 431
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
FS + + I G +D+A L+ + ++ L+ +V E+ + +S + +K +
Sbjct: 7 FSKLIEKIRGVDYIDEAVLQELSREIQRSLLKADVPLELVKAFTDSAVKRIREEKPPAGI 66
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435
+ + E LV++L + + K +KPYVV+ +GV G GK+T AK+
Sbjct: 67 PPREYLVYVLYEELVKLLGGEQPAEF-------KPTKKPYVVLLLGVEGSGKTTTAAKL 118
>sp|P75362|FTSY_MYCPN Signal recognition particle receptor FtsY OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=ftsY PE=3 SV=1
Length = 348
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 340 KALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRS 399
++L + L+ ++ A K+C+++ L+ ++++ I I+ +++ +V +
Sbjct: 69 ESLFEELVLLDIGYHAATKICDAIVQELKLQRVSDPQLIQEII---VDKLIVYYIQ---- 121
Query: 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435
D L + E K V +FVGVNGVGK+T+LAK+
Sbjct: 122 -DKLFETDLTVEANKTNVYLFVGVNGVGKTTSLAKL 156
>sp|P47539|FTSY_MYCGE Signal recognition particle receptor FtsY OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=ftsY PE=3
SV=1
Length = 346
Score = 40.0 bits (92), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 346 LMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRD 405
L+ +V A K+C+++ ++ ++ F I ++ +++ +V + D L D
Sbjct: 75 LVLLDVGYHAANKICDAIIEQIKLNRITDFQLIKELI---IDQIIVYYIQ-----DKLFD 126
Query: 406 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435
+ V +FVGVNGVGK+T LAK+
Sbjct: 127 TDLIVKPNFTNVYLFVGVNGVGKTTTLAKI 156
>sp|P49971|SR541_SOLLC Signal recognition particle 54 kDa protein 1 OS=Solanum
lycopersicum PE=3 SV=1
Length = 496
Score = 39.7 bits (91), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 311 AKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGK 370
A+ G S Q ++ +D+ L L + L+ +V ++ + ++ + +
Sbjct: 4 AQLGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMSTNIKKIVNLE 63
Query: 371 KLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKST 430
LA+ I+Q A+ L +IL P + L+ + KP VV+FVG+ G GK+T
Sbjct: 64 DLAAGHNKRRIIQQAVYNELCKILDPGKPAFTLK-------KGKPSVVMFVGLQGSGKTT 116
Query: 431 NLAK 434
K
Sbjct: 117 TCTK 120
>sp|Q8ZT95|SRP54_PYRAE Signal recognition particle 54 kDa protein OS=Pyrobaculum
aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM
9630 / NBRC 100827) GN=srp54 PE=3 SV=1
Length = 433
Score = 39.3 bits (90), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLA 373
T F + + I G +D+A L+ + ++ L+ +V ++ + E+ ++ +K
Sbjct: 5 TEIFGKLLEKIRGVDYIDEATLQELSREIQRTLLKADVPLDLVKSFTENAVKRIKEEKPP 64
Query: 374 SFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLA 433
+ + + E LV++L + + K +KPY+V+ +GV G GK+T A
Sbjct: 65 AGIPPREYLIYVLYEELVKLLGGEQPAEF-------KPTKKPYIVLLLGVEGSGKTTTAA 117
Query: 434 KV 435
K+
Sbjct: 118 KL 119
>sp|Q9RS67|FTSY_DEIRA Signal recognition particle receptor FtsY OS=Deinococcus
radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 /
LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
GN=ftsY PE=3 SV=1
Length = 317
Score = 39.3 bits (90), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 30/139 (21%)
Query: 316 WF-------SSMFQSIAGKANLDKADLEPA------LKALKDRLMTKNVAEEIAEKLCES 362
WF S Q I+G A +++ A ++ L+ L+ +V E++ E
Sbjct: 3 WFDRLRQGLSKTRQQISGTAGPLDQEVQTAFTRIDNIEDLEYALIAADVGRAATEEIIED 62
Query: 363 VAASLEGKKLASFTRISSIVQAAMEEALVRILTPR------RSIDILRDVHAAKEQRKPY 416
+ + EG+ +Q A+ AL L P R + DV +K K +
Sbjct: 63 IRKNGEGR-----------LQDALMRALTLQLEPNARRAQFRELGFSPDVSRSKVDPKGH 111
Query: 417 VVVFVGVNGVGKSTNLAKV 435
VV+ +GVNGVGK+T +AK+
Sbjct: 112 VVMVIGVNGVGKTTTIAKL 130
>sp|A1RS43|SRP54_PYRIL Signal recognition particle 54 kDa protein OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=srp54 PE=3
SV=1
Length = 433
Score = 38.9 bits (89), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
FS + + I G + +D+A L+ + ++ L+ +V ++ + E+ + +K +
Sbjct: 8 FSKLVEKIRGVSYIDEATLQELSREIQRALLKADVPLDMVKTFTENAVKRMREEKPPAGI 67
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435
V + + LV++L + + K +KPY+V+ +GV G GK+T AK+
Sbjct: 68 PPREYVLYILYDELVKLLGGEQPAEF-------KPVKKPYLVLLLGVEGSGKTTTAAKL 119
>sp|Q9HJ93|FTSY_THEAC Signal recognition particle receptor FtsY OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=ftsY PE=3 SV=1
Length = 288
Score = 38.9 bits (89), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 21/94 (22%)
Query: 351 VAEEIAEKLCESVAASLEGKKLASFTR----------ISSIVQAAMEEALVRILTPRRSI 400
VA+EI KL E+ + + LAS R + ++ +++ E + P
Sbjct: 23 VADEIPLKLVEADVSLEAAEDLASLVRNKLKEDTTLDPNEVLSSSILE-----MMPEYKF 77
Query: 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAK 434
D+L +KP+VV+F+G+NG GK+T + K
Sbjct: 78 DVL------NVNKKPFVVLFLGINGTGKTTTIGK 105
>sp|P44870|FTSY_HAEIN Signal recognition particle receptor FtsY OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ftsY PE=3
SV=1
Length = 414
Score = 38.9 bits (89), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 401 DILRDVHAAKE---QRKPYVVVFVGVNGVGKSTNLAKV 435
DIL V E +KPYV++ VGVNGVGK+T + K+
Sbjct: 192 DILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKL 229
>sp|Q9V1E8|SRP54_PYRAB Signal recognition particle 54 kDa protein OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=srp54 PE=3 SV=1
Length = 443
Score = 38.5 bits (88), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAA-SLEGKKLASF 375
S+ + IA ++D+A ++ ++ ++ L+ +V + KL + + +LE K A
Sbjct: 10 LSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGI 69
Query: 376 TRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++ I++ EE + T + I+I + KP +++ VGV G GK+T +AK+
Sbjct: 70 SKKEHIIKIVYEELTKFLGTEAKPIEI---------KEKPTILLMVGVQGSGKTTTVAKL 120
>sp|O59307|SRP54_PYRHO Signal recognition particle 54 kDa protein OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=srp54 PE=3 SV=3
Length = 443
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAA-SLEGKKLASF 375
S+ + IA ++D+A ++ ++ ++ L+ +V + KL + + +LE K A
Sbjct: 10 LSNALKKIARAGSVDEALVKEVVRDIQRALLQADVNVRLVLKLTKEIQRRALEEKPPAGI 69
Query: 376 TRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++ I++ EE + T + I+I + KP V++ VGV G GK+T +AK+
Sbjct: 70 SKKEHIIKIVYEELTKFLGTEAKPIEI---------KEKPTVLLTVGVQGSGKTTTVAKL 120
>sp|B1Y9L4|SRP54_PYRNV Signal recognition particle 54 kDa protein OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=srp54 PE=3 SV=1
Length = 433
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
F + + I G + +D+A L+ + ++ L+ +V ++ + ++ ++ +K +
Sbjct: 8 FGKLVEKIRGVSYIDEATLQDLSREIQRALLKADVPLDMVKAFTDAAVKRIKEEKPPAGI 67
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV- 435
+ + E LV++L + + K +KPYVV+ +GV G GK+T AK+
Sbjct: 68 PPREYLLYVLYEELVKLLGGEQPPEF-------KPTKKPYVVLLLGVEGSGKTTTAAKLA 120
Query: 436 KLII 439
KL++
Sbjct: 121 KLLV 124
>sp|P57137|FTSY_BUCAI Signal recognition particle receptor FtsY OS=Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain APS) GN=ftsY PE=3
SV=1
Length = 378
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 378 ISSIVQAAMEEAL-----VRILTPRRSIDILRDVHAAKE--QRKPYVVVFVGVNGVGKST 430
IS++++ E L + L R+ +IL+ V E P+V++ VGVNG GK+T
Sbjct: 133 ISNLIKDVNREDLKNSEKLYFLLKRKMFNILKKVEIPLEISSHSPFVILVVGVNGTGKTT 192
Query: 431 NLAKV 435
+AK+
Sbjct: 193 TVAKL 197
>sp|P37106|SR541_ARATH Signal recognition particle 54 kDa protein 1 OS=Arabidopsis
thaliana GN=SRP-54A PE=2 SV=1
Length = 479
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLAS 374
G + Q + +D+ L L + L+ +V+ + EK+ ++ + LA+
Sbjct: 8 GRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAA 67
Query: 375 FTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAK 434
I++ A+ + L R+L P + A ++ KP VV+FVG+ G GK+T K
Sbjct: 68 GHNKRLIIEQAIFKELCRMLDPGKP-------AFAPKKAKPSVVMFVGLQGAGKTTTCTK 120
>sp|A9CHH2|FTSY_AGRT5 Signal recognition particle receptor FtsY OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=ftsY PE=3 SV=1
Length = 478
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 24/154 (15%)
Query: 291 FSSDSESEEDEEVGKHNKPD---------AKKTGWFSSMFQSIAGKANLDKADLEPALKA 341
FSS E EE V K A+ + ++ ++ K LD E L
Sbjct: 158 FSSAREREEPVPVAPQVKLTWFQRLRAGLARTSSQLTTQISALFTKRKLD----EDTLDE 213
Query: 342 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSID 401
L+D L+ ++ E A ++ ++++ GK + S ++ I+ + + L + P +D
Sbjct: 214 LEDLLIQSDLGVETAMRITGALSSERYGKDV-SGEDVARIMAGEITKVLKPVAKPLE-LD 271
Query: 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435
+ KP+V++ VGVNG GK+T + K+
Sbjct: 272 L---------SHKPHVILVVGVNGTGKTTTIGKL 296
>sp|P14576|SRP54_MOUSE Signal recognition particle 54 kDa protein OS=Mus musculus GN=Srp54
PE=1 SV=2
Length = 504
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR-KPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
>sp|O07347|SRP54_THEAQ Signal recognition particle protein OS=Thermus aquaticus GN=ffh
PE=1 SV=3
Length = 430
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQ 383
+ G+ + + DL+ L+ ++ LM +V E+A E V GK++ + ++
Sbjct: 16 LRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVIL 75
Query: 384 AAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKL 437
A + EAL L + +L+D + + VG+ G GK+T AK+ L
Sbjct: 76 ATVYEALKEALGGEARLPVLKDRN---------LWFLVGLQGSGKTTTAAKLAL 120
>sp|Q6AYB5|SRP54_RAT Signal recognition particle 54 kDa protein OS=Rattus norvegicus
GN=Srp54 PE=2 SV=1
Length = 504
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR-KPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
>sp|Q5R4R6|SRP54_PONAB Signal recognition particle 54 kDa protein OS=Pongo abelii GN=SRP54
PE=2 SV=1
Length = 504
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR-KPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
>sp|Q4R965|SRP54_MACFA Signal recognition particle 54 kDa protein OS=Macaca fascicularis
GN=SRP54 PE=2 SV=1
Length = 504
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR-KPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
>sp|P61011|SRP54_HUMAN Signal recognition particle 54 kDa protein OS=Homo sapiens GN=SRP54
PE=1 SV=1
Length = 504
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR-KPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
>sp|P61010|SRP54_CANFA Signal recognition particle 54 kDa protein OS=Canis familiaris
GN=SRP54 PE=1 SV=1
Length = 504
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR-KPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
>sp|Q2T9U1|SRP54_BOVIN Signal recognition particle 54 kDa protein OS=Bos taurus GN=SRP54
PE=2 SV=1
Length = 504
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR-KPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
>sp|P57010|FTSY_NEIMA Signal recognition particle receptor FtsY OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=ftsY PE=3
SV=1
Length = 421
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 15/118 (12%)
Query: 320 MFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVA--ASLEGKKLASFTR 377
M +S+AG + D E + L+ L+T ++ E E L + V SL+G K + R
Sbjct: 137 MAKSLAGVFGGGQID-EDLYEELETVLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELR 195
Query: 378 ISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435
A++EAL ++ P +L E ++P+V++ G+NG GK+T++ K+
Sbjct: 196 ------GALKEALYDLIKPLEKPLVL------PETKEPFVIMLAGINGAGKTTSIGKL 241
>sp|P57011|FTSY_NEIMB Signal recognition particle receptor FtsY OS=Neisseria meningitidis
serogroup B (strain MC58) GN=ftsY PE=3 SV=1
Length = 421
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 15/118 (12%)
Query: 320 MFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVA--ASLEGKKLASFTR 377
M +S+AG + D E + L+ L+T ++ E E L + V SL+G K + R
Sbjct: 137 MAKSLAGVFGGGQID-EDLYEELETVLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELR 195
Query: 378 ISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435
A++EAL ++ P +L E ++P+V++ G+NG GK+T++ K+
Sbjct: 196 ------GALKEALYDLIKPLEKPLVL------PETKEPFVIMLAGINGAGKTTSIGKL 241
>sp|O80842|CFTSY_ARATH Cell division protein FtsY homolog, chloroplastic OS=Arabidopsis
thaliana GN=CPFTSY PE=1 SV=2
Length = 366
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 333 ADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVR 392
A+ + L L++ L+ + +I ++ E + + KL S S ++ A++E+++
Sbjct: 91 AETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKS----GSEIKDALKESVLE 146
Query: 393 ILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435
+L + S L+ RKP V++ VGVNG GK+T+L K+
Sbjct: 147 MLAKKNSKTELQLGF-----RKPAVIMIVGVNGGGKTTSLGKL 184
>sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2 OS=Solanum
lycopersicum PE=2 SV=1
Length = 499
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLAS 374
G S Q ++ +D+ L L + L+ +V ++ + ++ + LA+
Sbjct: 8 GSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMTTNIKKIVNLDDLAA 67
Query: 375 FTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAK 434
I+Q A+ L +IL P + ++ KP +V+FVG+ G GK+T K
Sbjct: 68 GHNKRRIIQQAVFNELCKILDPGKP-------SFTPKKGKPSIVMFVGLQGSGKTTTCTK 120
>sp|Q8U070|SRP54_PYRFU Signal recognition particle 54 kDa protein OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=srp54
PE=1 SV=1
Length = 443
Score = 35.8 bits (81), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAA-SLEGKKLASF 375
++ + IA +++D+A ++ ++ ++ L+ +V + +L + +LE K A
Sbjct: 10 LANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGI 69
Query: 376 TRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++ I++ EE + T + I+I + KP +++ VG+ G GK+T +AK+
Sbjct: 70 SKKEHIIKIVYEELTKFLGTEAKPIEI---------KEKPTILLMVGIQGSGKTTTVAKL 120
>sp|A4WLQ3|SRP54_PYRAR Signal recognition particle 54 kDa protein OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=srp54 PE=3
SV=1
Length = 433
Score = 35.8 bits (81), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLA 373
T FS + + I +D+A L+ + ++ L+ +V ++ + ++ + +K
Sbjct: 5 TELFSKLVEKIRDVEYIDEATLQEIAREIQRTLLKADVPLDLVKTFTDNAVKRIREEKPP 64
Query: 374 SFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLA 433
+ + + E LV+++ + + K +KPY+V+ +GV G GK+T A
Sbjct: 65 AGIPPREYLIYVLYEELVKLMGGEQPAEF-------KPTKKPYIVLLLGVEGSGKTTTSA 117
Query: 434 KV 435
K+
Sbjct: 118 KL 119
>sp|Q5JJC8|SRP54_PYRKO Signal recognition particle 54 kDa protein OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=srp54 PE=3 SV=1
Length = 448
Score = 35.8 bits (81), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAA-SLEGKKLASF 375
+S + +A + +D+A ++ ++ ++ L+ +V ++ +L + + +LE + A
Sbjct: 10 LNSALKKLARSSTVDEATIKEIVRDIQRALLQADVNVKLVLQLTKQIQKRALEEEPPAGV 69
Query: 376 TRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++ I++ EE + T + ++I + KP V++ VG+ G GK+T++AK+
Sbjct: 70 SKKEHIIKIVYEELTKFLGTEAKPLEI---------KHKPTVILTVGIQGSGKTTSVAKL 120
>sp|O30391|FTSY_NEIMC Signal recognition particle receptor FtsY OS=Neisseria meningitidis
serogroup C GN=ftsY PE=3 SV=1
Length = 421
Score = 35.8 bits (81), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 15/118 (12%)
Query: 320 MFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVA--ASLEGKKLASFTR 377
M +S+AG + D E + L+ L+T ++ E E L + V SL+G K + R
Sbjct: 137 MAKSLAGVFGGGQID-EDLYEELETVLITSDMDMEATEYLMKDVRDRVSLKGLKDGNELR 195
Query: 378 ISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435
A++EAL ++ P +L E ++P+V++ G+NG GK+T++ K+
Sbjct: 196 ------GALKEALYDLIKPLEKPLVL------PETKEPFVIMLAGINGAGKTTSIGKL 241
>sp|Q8G736|FTSY_BIFLO Signal recognition particle receptor FtsY OS=Bifidobacterium longum
(strain NCC 2705) GN=ftsY PE=3 SV=1
Length = 420
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 17/128 (13%)
Query: 311 AKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVA--ASLE 368
AK F I K NL +AD E ++D L+ +V + + +L + + A +
Sbjct: 127 AKSGNPFGKALFDILAKDNLSEADWE----DVEDTLLLADVGADASAQLVDDLRTDARIT 182
Query: 369 GKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKE-QRKPYVVVFVGVNGVG 427
GK + R A ++E L+ ++ R D R ++A K KP V++ VGVNG G
Sbjct: 183 GKADPAEVR------ATLKEKLLDLVG--RDTD--RRLNAEKPGAAKPSVIIMVGVNGTG 232
Query: 428 KSTNLAKV 435
K+T K+
Sbjct: 233 KTTTAGKL 240
>sp|P14929|FTSY_NEIGO Signal recognition particle receptor FtsY OS=Neisseria gonorrhoeae
GN=ftsY PE=1 SV=2
Length = 416
Score = 35.4 bits (80), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 342 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSID 401
L+ L+T ++ E E L + V + K L + + A++EAL ++ P
Sbjct: 154 LETVLITGDMGMEATEYLMKDVRGRVSLKGLKDGNEL----RGALKEALYDLIKPLEKPL 209
Query: 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435
+L E ++P+V++ G+NG GK+T++ K+
Sbjct: 210 VL------PETKEPFVIMLAGINGAGKTTSIGKL 237
>sp|P66842|FTSY_MYCTU Signal recognition particle receptor FtsY OS=Mycobacterium
tuberculosis GN=ftsY PE=3 SV=1
Length = 422
Score = 35.4 bits (80), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 362 SVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFV 421
SV + L + + R + +A + + L+ L P +D R + A P V++ V
Sbjct: 174 SVVSQLRSRLASGNVRTEADARAVLRDVLINELQP--GMD--RSIRALPHAGHPSVLLVV 229
Query: 422 GVNGVGKSTNLAKVKLIILID 442
GVNG GK+T + K+ +++ D
Sbjct: 230 GVNGTGKTTTVGKLARVLVAD 250
>sp|P66843|FTSY_MYCBO Signal recognition particle receptor FtsY OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=ftsY PE=3 SV=1
Length = 422
Score = 35.4 bits (80), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 362 SVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFV 421
SV + L + + R + +A + + L+ L P +D R + A P V++ V
Sbjct: 174 SVVSQLRSRLASGNVRTEADARAVLRDVLINELQP--GMD--RSIRALPHAGHPSVLLVV 229
Query: 422 GVNGVGKSTNLAKVKLIILID 442
GVNG GK+T + K+ +++ D
Sbjct: 230 GVNGTGKTTTVGKLARVLVAD 250
>sp|P10121|FTSY_ECOLI Signal recognition particle receptor FtsY OS=Escherichia coli
(strain K12) GN=ftsY PE=1 SV=1
Length = 497
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 411 EQRKPYVVVFVGVNGVGKSTNLAKV 435
E + P+V++ VGVNGVGK+T + K+
Sbjct: 289 EGKAPFVILMVGVNGVGKTTTIGKL 313
>sp|O67266|FLHF_AQUAE Flagellar biosynthesis protein FlhF OS=Aquifex aeolicus (strain
VF5) GN=flhF PE=3 SV=1
Length = 373
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 17/101 (16%)
Query: 337 PALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTP 396
P +K ++L+ KN+++ IAEK+ + K+ F +E +
Sbjct: 107 PRVKRYLEKLVIKNISKNIAEKIIQDACGYDIDNKIYDFK----------DEPYTSL--- 153
Query: 397 RRSIDILRDVHAAKE--QRKPYVVVFVGVNGVGKSTNLAKV 435
R SI+ +++ +E Q P VV VG GVGK+T LAK+
Sbjct: 154 RESIE--KNIKLNEEFIQNPPKVVALVGPTGVGKTTTLAKL 192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,591,905
Number of Sequences: 539616
Number of extensions: 7288495
Number of successful extensions: 30154
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 435
Number of HSP's that attempted gapping in prelim test: 29241
Number of HSP's gapped (non-prelim): 1104
length of query: 444
length of database: 191,569,459
effective HSP length: 121
effective length of query: 323
effective length of database: 126,275,923
effective search space: 40787123129
effective search space used: 40787123129
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)