Query 013364
Match_columns 444
No_of_seqs 238 out of 1524
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:06:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013364.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013364hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0781 Signal recognition par 100.0 1.1E-76 2.5E-81 604.2 29.5 394 1-443 1-406 (587)
2 PF04086 SRP-alpha_N: Signal r 100.0 9.7E-42 2.1E-46 337.6 5.2 116 27-146 1-125 (279)
3 COG0552 FtsY Signal recognitio 99.8 4.1E-20 8.9E-25 184.9 13.4 108 329-443 59-167 (340)
4 PRK14974 cell division protein 99.8 8.9E-18 1.9E-22 170.8 14.6 123 312-442 45-167 (336)
5 COG0541 Ffh Signal recognition 99.7 2.9E-17 6.3E-22 169.0 14.3 120 314-441 6-126 (451)
6 TIGR01425 SRP54_euk signal rec 99.7 2.4E-17 5.1E-22 172.0 13.9 121 315-442 7-127 (429)
7 PRK10867 signal recognition pa 99.7 9.8E-17 2.1E-21 168.0 14.0 122 315-444 7-129 (433)
8 TIGR00959 ffh signal recogniti 99.7 3.1E-16 6.8E-21 164.1 14.0 121 314-442 5-126 (428)
9 PRK00771 signal recognition pa 99.7 4.4E-16 9.6E-21 163.4 14.1 119 316-442 4-122 (437)
10 KOG0780 Signal recognition par 99.7 7.8E-16 1.7E-20 155.8 12.8 121 315-442 8-128 (483)
11 PRK10416 signal recognition pa 99.6 6.6E-15 1.4E-19 149.0 11.9 108 320-443 34-142 (318)
12 TIGR00064 ftsY signal recognit 99.5 3.8E-13 8.3E-18 133.4 11.9 97 335-442 3-99 (272)
13 PRK12723 flagellar biosynthesi 99.3 5.3E-12 1.1E-16 130.9 11.7 94 336-442 108-201 (388)
14 PRK06995 flhF flagellar biosyn 99.3 5.9E-12 1.3E-16 133.5 12.1 109 314-444 176-285 (484)
15 PRK12724 flagellar biosynthesi 99.3 1.9E-11 4.1E-16 127.4 12.5 105 327-441 145-249 (432)
16 TIGR03499 FlhF flagellar biosy 99.2 3.7E-11 8E-16 119.8 11.2 91 334-443 131-222 (282)
17 PRK14723 flhF flagellar biosyn 99.2 6.8E-11 1.5E-15 130.9 10.6 90 336-443 124-213 (767)
18 PRK05703 flhF flagellar biosyn 99.2 1.7E-10 3.6E-15 121.3 11.9 92 331-440 155-246 (424)
19 PRK11889 flhF flagellar biosyn 99.1 3.1E-10 6.8E-15 117.4 11.0 92 336-442 177-268 (436)
20 PRK14721 flhF flagellar biosyn 99.0 1.9E-09 4.1E-14 112.9 10.5 88 336-442 131-218 (420)
21 PRK14722 flhF flagellar biosyn 98.9 5.5E-09 1.2E-13 108.0 10.2 93 337-444 74-166 (374)
22 PRK12726 flagellar biosynthesi 98.9 6.9E-09 1.5E-13 107.1 9.6 88 341-442 146-233 (407)
23 PRK12337 2-phosphoglycerate ki 98.8 1.6E-08 3.4E-13 106.6 10.2 95 339-440 180-280 (475)
24 COG1419 FlhF Flagellar GTP-bin 98.6 1.2E-07 2.7E-12 98.1 9.0 26 415-440 203-228 (407)
25 PRK12727 flagellar biosynthesi 98.6 2.9E-07 6.2E-12 98.7 10.3 88 336-443 291-378 (559)
26 PRK04220 2-phosphoglycerate ki 98.4 7.2E-07 1.6E-11 89.7 8.5 86 347-439 31-116 (301)
27 PF02881 SRP54_N: SRP54-type p 98.4 1.9E-06 4.2E-11 68.8 9.1 71 317-390 5-75 (75)
28 PRK06731 flhF flagellar biosyn 98.2 2.3E-06 4.9E-11 85.1 6.1 94 332-441 8-101 (270)
29 PF09201 SRX: SRX; InterPro: 97.5 0.00015 3.3E-09 64.4 5.8 77 1-77 1-86 (148)
30 COG2074 2-phosphoglycerate kin 97.1 0.0017 3.7E-08 63.9 8.4 90 344-439 22-113 (299)
31 PRK09270 nucleoside triphospha 97.0 0.00079 1.7E-08 64.9 4.5 32 412-443 30-61 (229)
32 TIGR00554 panK_bact pantothena 96.9 0.0011 2.3E-08 66.8 4.5 28 413-440 60-87 (290)
33 COG4586 ABC-type uncharacteriz 96.7 0.00091 2E-08 66.6 2.2 54 384-439 20-74 (325)
34 TIGR02524 dot_icm_DotB Dot/Icm 96.2 0.0034 7.3E-08 65.1 3.4 26 416-441 135-160 (358)
35 TIGR00750 lao LAO/AO transport 96.2 0.0041 8.9E-08 62.6 3.9 30 413-442 32-61 (300)
36 COG0542 clpA ATP-binding subun 96.2 0.0075 1.6E-07 67.8 6.2 29 412-440 517-546 (786)
37 TIGR02903 spore_lon_C ATP-depe 96.2 0.016 3.4E-07 64.3 8.4 29 412-440 172-200 (615)
38 PLN02796 D-glycerate 3-kinase 96.1 0.025 5.4E-07 58.3 9.0 90 329-441 31-126 (347)
39 COG4240 Predicted kinase [Gene 96.0 0.007 1.5E-07 58.9 4.3 34 410-443 45-78 (300)
40 COG1131 CcmA ABC-type multidru 96.0 0.0016 3.4E-08 65.6 -0.3 34 405-440 23-56 (293)
41 PF13555 AAA_29: P-loop contai 96.0 0.0063 1.4E-07 47.4 3.1 24 416-439 24-47 (62)
42 PF06309 Torsin: Torsin; Inte 96.0 0.033 7.1E-07 49.5 8.1 60 358-439 18-77 (127)
43 PRK11034 clpA ATP-dependent Cl 95.9 0.022 4.8E-07 64.5 8.0 27 413-439 485-512 (758)
44 PRK10865 protein disaggregatio 95.9 0.018 3.8E-07 66.2 7.3 28 413-440 595-623 (857)
45 TIGR02639 ClpA ATP-dependent C 95.9 0.043 9.4E-07 62.0 10.3 27 413-439 481-508 (731)
46 TIGR01420 pilT_fam pilus retra 95.9 0.0055 1.2E-07 62.9 2.9 26 416-441 123-148 (343)
47 PRK09435 membrane ATPase/prote 95.8 0.0079 1.7E-07 61.8 4.0 31 412-442 53-83 (332)
48 COG2805 PilT Tfp pilus assembl 95.8 0.0061 1.3E-07 61.5 2.9 28 416-443 126-153 (353)
49 PRK13536 nodulation factor exp 95.7 0.0022 4.8E-08 65.9 -0.6 34 405-440 59-92 (340)
50 PLN03210 Resistant to P. syrin 95.7 0.053 1.1E-06 64.3 10.7 106 314-442 117-234 (1153)
51 TIGR03345 VI_ClpV1 type VI sec 95.7 0.023 5.1E-07 65.2 7.4 28 413-440 593-621 (852)
52 PRK13537 nodulation ABC transp 95.7 0.0026 5.5E-08 64.3 -0.3 35 404-440 24-58 (306)
53 PRK06526 transposase; Provisio 95.7 0.015 3.2E-07 57.5 4.8 28 415-442 98-125 (254)
54 cd03257 ABC_NikE_OppD_transpor 95.6 0.0029 6.3E-08 60.2 -0.1 24 416-439 32-55 (228)
55 TIGR00763 lon ATP-dependent pr 95.6 0.071 1.5E-06 60.7 10.8 27 415-441 347-373 (775)
56 cd02019 NK Nucleoside/nucleoti 95.6 0.0097 2.1E-07 46.7 2.6 23 417-439 1-23 (69)
57 PRK05439 pantothenate kinase; 95.5 0.014 3E-07 59.4 4.4 30 412-441 83-112 (311)
58 cd03258 ABC_MetN_methionine_tr 95.5 0.0034 7.3E-08 60.2 -0.1 25 416-440 32-56 (233)
59 CHL00095 clpC Clp protease ATP 95.5 0.025 5.5E-07 64.6 6.6 28 412-439 535-563 (821)
60 PRK10247 putative ABC transpor 95.4 0.0044 9.4E-08 59.4 0.3 25 416-440 34-58 (225)
61 PRK14242 phosphate transporter 95.4 0.006 1.3E-07 59.3 1.1 24 416-439 33-56 (253)
62 TIGR03015 pepcterm_ATPase puta 95.4 0.011 2.3E-07 57.6 2.9 26 415-440 43-68 (269)
63 TIGR02211 LolD_lipo_ex lipopro 95.4 0.0037 8E-08 59.4 -0.5 24 416-439 32-55 (221)
64 COG1220 HslU ATP-dependent pro 95.3 0.037 7.9E-07 56.9 6.5 65 358-437 8-72 (444)
65 PRK10584 putative ABC transpor 95.3 0.0041 8.9E-08 59.4 -0.3 24 416-439 37-60 (228)
66 PLN02200 adenylate kinase fami 95.3 0.012 2.6E-07 57.3 2.9 28 412-439 40-67 (234)
67 PRK05201 hslU ATP-dependent pr 95.3 0.028 6.2E-07 59.4 5.7 27 414-440 49-75 (443)
68 cd03267 ABC_NatA_like Similar 95.2 0.0046 9.9E-08 59.8 -0.4 36 403-440 37-72 (236)
69 TIGR02525 plasmid_TraJ plasmid 95.2 0.016 3.4E-07 60.5 3.5 26 416-441 150-175 (372)
70 PRK11247 ssuB aliphatic sulfon 95.2 0.0046 9.9E-08 60.9 -0.5 25 416-440 39-63 (257)
71 PF13245 AAA_19: Part of AAA d 95.1 0.023 5E-07 45.8 3.6 27 415-441 10-36 (76)
72 TIGR02324 CP_lyasePhnL phospho 95.1 0.0053 1.1E-07 58.5 -0.2 25 416-440 35-59 (224)
73 cd03228 ABCC_MRP_Like The MRP 95.1 0.0062 1.3E-07 55.9 0.2 25 416-440 29-53 (171)
74 PRK11629 lolD lipoprotein tran 95.0 0.0093 2E-07 57.3 1.2 24 416-439 36-59 (233)
75 PRK13649 cbiO cobalt transport 95.0 0.005 1.1E-07 61.0 -0.7 24 416-439 34-57 (280)
76 cd03223 ABCD_peroxisomal_ALDP 95.0 0.0061 1.3E-07 55.8 -0.2 25 416-440 28-52 (166)
77 cd03248 ABCC_TAP TAP, the Tran 95.0 0.0079 1.7E-07 57.4 0.5 24 416-439 41-64 (226)
78 PRK13645 cbiO cobalt transport 94.9 0.0057 1.2E-07 61.0 -0.6 25 416-440 38-62 (289)
79 cd03234 ABCG_White The White s 94.9 0.0086 1.9E-07 57.3 0.6 25 416-440 34-58 (226)
80 PRK15112 antimicrobial peptide 94.9 0.0069 1.5E-07 59.7 -0.1 25 416-440 40-64 (267)
81 PRK13641 cbiO cobalt transport 94.9 0.0059 1.3E-07 60.9 -0.6 24 416-439 34-57 (287)
82 PRK13646 cbiO cobalt transport 94.9 0.0063 1.4E-07 60.7 -0.4 25 416-440 34-58 (286)
83 PRK10575 iron-hydroxamate tran 94.9 0.0058 1.3E-07 60.1 -0.6 25 416-440 38-62 (265)
84 cd03294 ABC_Pro_Gly_Bertaine T 94.9 0.006 1.3E-07 60.2 -0.6 24 416-439 51-74 (269)
85 PRK14248 phosphate ABC transpo 94.9 0.01 2.2E-07 58.4 1.1 24 416-439 48-71 (268)
86 PRK11701 phnK phosphonate C-P 94.9 0.0064 1.4E-07 59.4 -0.4 25 416-440 33-57 (258)
87 PRK10744 pstB phosphate transp 94.8 0.011 2.3E-07 58.0 1.1 24 416-439 40-63 (260)
88 PRK11614 livF leucine/isoleuci 94.8 0.0057 1.2E-07 58.9 -0.8 24 416-439 32-55 (237)
89 cd03233 ABC_PDR_domain1 The pl 94.8 0.0088 1.9E-07 56.5 0.4 25 416-440 34-58 (202)
90 PRK14259 phosphate ABC transpo 94.8 0.011 2.3E-07 58.4 1.0 33 405-439 31-63 (269)
91 cd03266 ABC_NatA_sodium_export 94.8 0.0078 1.7E-07 57.0 -0.0 24 416-439 32-55 (218)
92 PRK13632 cbiO cobalt transport 94.8 0.0074 1.6E-07 59.6 -0.3 25 416-440 36-60 (271)
93 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.8 0.0098 2.1E-07 57.1 0.6 34 404-439 39-72 (224)
94 TIGR02769 nickel_nikE nickel i 94.7 0.0077 1.7E-07 59.2 -0.2 25 416-440 38-62 (265)
95 PRK11300 livG leucine/isoleuci 94.7 0.0078 1.7E-07 58.5 -0.3 25 416-440 32-56 (255)
96 PRK13650 cbiO cobalt transport 94.7 0.0071 1.5E-07 60.1 -0.5 25 416-440 34-58 (279)
97 CHL00181 cbbX CbbX; Provisiona 94.7 0.077 1.7E-06 53.3 6.8 27 415-441 59-85 (287)
98 PRK13637 cbiO cobalt transport 94.7 0.0071 1.5E-07 60.4 -0.7 25 416-440 34-58 (287)
99 PRK14273 phosphate ABC transpo 94.7 0.014 3.1E-07 56.8 1.4 25 416-440 34-58 (254)
100 PRK13546 teichoic acids export 94.7 0.0072 1.6E-07 59.8 -0.6 36 403-440 40-75 (264)
101 PLN02165 adenylate isopentenyl 94.7 0.024 5.1E-07 58.3 3.0 26 414-439 42-67 (334)
102 CHL00131 ycf16 sulfate ABC tra 94.6 0.013 2.7E-07 57.0 1.0 23 416-438 34-56 (252)
103 PRK10253 iron-enterobactin tra 94.6 0.0082 1.8E-07 59.0 -0.3 24 416-439 34-57 (265)
104 cd03250 ABCC_MRP_domain1 Domai 94.6 0.0093 2E-07 56.1 0.0 26 416-441 32-57 (204)
105 PRK14261 phosphate ABC transpo 94.6 0.012 2.7E-07 57.2 0.9 23 416-438 33-55 (253)
106 cd01858 NGP_1 NGP-1. Autoanti 94.6 0.04 8.6E-07 49.7 4.1 24 414-437 101-124 (157)
107 PF00437 T2SE: Type II/IV secr 94.6 0.023 5E-07 55.8 2.7 26 416-441 128-153 (270)
108 PRK13764 ATPase; Provisional 94.5 0.028 6E-07 62.0 3.4 27 415-441 257-283 (602)
109 TIGR03346 chaperone_ClpB ATP-d 94.5 0.13 2.7E-06 59.3 8.9 28 413-440 592-620 (852)
110 TIGR00390 hslU ATP-dependent p 94.5 0.061 1.3E-06 57.0 5.8 27 414-440 46-72 (441)
111 PRK14239 phosphate transporter 94.5 0.014 3.1E-07 56.6 1.0 23 416-438 32-54 (252)
112 PRK13647 cbiO cobalt transport 94.5 0.0081 1.8E-07 59.5 -0.7 29 410-440 28-56 (274)
113 PRK13635 cbiO cobalt transport 94.5 0.009 2E-07 59.4 -0.5 25 416-440 34-58 (279)
114 cd03216 ABC_Carb_Monos_I This 94.5 0.016 3.4E-07 53.0 1.1 27 411-439 24-50 (163)
115 PRK14243 phosphate transporter 94.5 0.016 3.5E-07 57.0 1.3 24 416-439 37-60 (264)
116 PRK14235 phosphate transporter 94.4 0.013 2.8E-07 57.8 0.5 25 416-440 46-70 (267)
117 PRK11153 metN DL-methionine tr 94.4 0.0081 1.7E-07 61.7 -1.0 24 416-439 32-55 (343)
118 cd03369 ABCC_NFT1 Domain 2 of 94.4 0.014 3E-07 55.0 0.7 25 416-440 35-59 (207)
119 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.4 0.016 3.4E-07 51.9 1.0 24 416-439 27-50 (144)
120 COG3842 PotA ABC-type spermidi 94.4 0.019 4E-07 59.4 1.5 24 416-439 32-55 (352)
121 PRK11819 putative ABC transpor 94.3 0.01 2.2E-07 64.7 -0.4 33 405-439 25-57 (556)
122 PRK14275 phosphate ABC transpo 94.3 0.015 3.2E-07 58.1 0.6 23 416-438 66-88 (286)
123 PRK13549 xylose transporter AT 94.3 0.018 3.8E-07 62.0 1.2 25 416-440 32-56 (506)
124 PRK13648 cbiO cobalt transport 94.3 0.011 2.4E-07 58.3 -0.4 24 416-439 36-59 (269)
125 PRK14268 phosphate ABC transpo 94.2 0.017 3.6E-07 56.6 0.8 24 416-439 39-62 (258)
126 PRK14265 phosphate ABC transpo 94.2 0.017 3.7E-07 57.3 0.9 24 416-439 47-70 (274)
127 cd03232 ABC_PDR_domain2 The pl 94.2 0.031 6.8E-07 52.2 2.6 22 416-437 34-55 (192)
128 PF03193 DUF258: Protein of un 94.2 0.034 7.4E-07 51.4 2.8 22 416-437 36-57 (161)
129 PRK14244 phosphate ABC transpo 94.2 0.017 3.8E-07 56.1 0.9 24 416-439 32-55 (251)
130 PRK13651 cobalt transporter AT 94.2 0.011 2.4E-07 59.7 -0.5 25 416-440 34-58 (305)
131 cd03291 ABCC_CFTR1 The CFTR su 94.2 0.012 2.5E-07 59.0 -0.4 24 416-439 64-87 (282)
132 TIGR02881 spore_V_K stage V sp 94.2 0.067 1.5E-06 52.6 5.0 28 413-440 40-67 (261)
133 PRK13631 cbiO cobalt transport 94.2 0.012 2.6E-07 60.0 -0.4 37 403-441 42-78 (320)
134 COG1072 CoaA Panthothenate kin 94.2 0.095 2.1E-06 52.4 5.9 31 412-442 79-109 (283)
135 TIGR02314 ABC_MetN D-methionin 94.2 0.011 2.3E-07 61.0 -0.7 25 416-440 32-56 (343)
136 TIGR02788 VirB11 P-type DNA tr 94.1 0.024 5.2E-07 57.4 1.8 26 416-441 145-170 (308)
137 PRK10619 histidine/lysine/argi 94.1 0.011 2.4E-07 57.8 -0.7 24 416-439 32-55 (257)
138 TIGR03420 DnaA_homol_Hda DnaA 94.1 0.075 1.6E-06 50.3 5.0 28 414-441 37-64 (226)
139 cd00267 ABC_ATPase ABC (ATP-bi 94.1 0.022 4.7E-07 51.3 1.3 25 416-440 26-50 (157)
140 PRK14274 phosphate ABC transpo 94.1 0.033 7.2E-07 54.4 2.7 24 416-439 39-62 (259)
141 PRK11288 araG L-arabinose tran 94.1 0.013 2.8E-07 63.0 -0.3 24 416-439 280-303 (501)
142 PRK15056 manganese/iron transp 94.1 0.02 4.4E-07 56.5 1.1 24 416-439 34-57 (272)
143 PRK04195 replication factor C 94.1 0.047 1E-06 58.6 3.9 25 415-439 39-63 (482)
144 PRK14254 phosphate ABC transpo 94.1 0.018 4E-07 57.4 0.8 24 416-439 66-89 (285)
145 PRK15064 ABC transporter ATP-b 94.1 0.013 2.7E-07 63.5 -0.4 25 416-440 346-370 (530)
146 PRK13633 cobalt transporter AT 94.1 0.013 2.8E-07 58.3 -0.4 25 416-440 37-61 (280)
147 PRK13640 cbiO cobalt transport 94.1 0.025 5.5E-07 56.3 1.7 25 416-440 34-58 (282)
148 PRK11831 putative ABC transpor 94.0 0.034 7.3E-07 54.9 2.6 24 416-439 34-57 (269)
149 PRK13634 cbiO cobalt transport 94.0 0.012 2.6E-07 58.8 -0.6 25 416-440 34-58 (290)
150 PRK14238 phosphate transporter 94.0 0.019 4.2E-07 56.7 0.8 25 416-440 51-75 (271)
151 PRK13636 cbiO cobalt transport 94.0 0.013 2.8E-07 58.4 -0.5 25 416-440 33-57 (283)
152 PRK13549 xylose transporter AT 94.0 0.023 5E-07 61.1 1.4 36 403-440 278-313 (506)
153 KOG0066 eIF2-interacting prote 94.0 0.021 4.5E-07 60.3 1.0 21 416-436 614-634 (807)
154 cd01129 PulE-GspE PulE/GspE Th 94.0 0.039 8.5E-07 54.7 2.9 25 416-440 81-105 (264)
155 TIGR02880 cbbX_cfxQ probable R 94.0 0.22 4.8E-06 49.9 8.3 26 416-441 59-84 (284)
156 PRK09183 transposase/IS protei 94.0 0.053 1.2E-06 53.6 3.8 27 416-442 103-129 (259)
157 PRK09700 D-allose transporter 94.0 0.015 3.3E-07 62.5 -0.1 24 416-439 290-313 (510)
158 PRK14255 phosphate ABC transpo 93.9 0.023 4.9E-07 55.3 1.1 24 416-439 32-55 (252)
159 KOG0991 Replication factor C, 93.9 0.058 1.2E-06 53.0 3.8 29 411-440 45-73 (333)
160 KOG2878 Predicted kinase [Gene 93.9 0.039 8.4E-07 53.0 2.6 34 411-444 27-60 (282)
161 TIGR03719 ABC_ABC_ChvD ATP-bin 93.9 0.024 5.1E-07 61.8 1.3 33 405-439 23-55 (552)
162 PRK09700 D-allose transporter 93.9 0.014 3E-07 62.8 -0.5 24 416-439 32-55 (510)
163 cd03288 ABCC_SUR2 The SUR doma 93.9 0.016 3.4E-07 56.8 -0.1 25 416-440 48-72 (257)
164 COG1703 ArgK Putative periplas 93.9 0.13 2.9E-06 52.0 6.4 32 411-442 47-78 (323)
165 PRK15439 autoinducer 2 ABC tra 93.9 0.013 2.7E-07 63.3 -0.9 24 416-439 38-61 (510)
166 PLN03046 D-glycerate 3-kinase; 93.9 0.048 1E-06 57.7 3.4 27 414-440 211-237 (460)
167 KOG2004 Mitochondrial ATP-depe 93.9 0.47 1E-05 53.1 11.0 28 416-443 439-466 (906)
168 PRK11432 fbpC ferric transport 93.9 0.013 2.9E-07 60.4 -0.7 25 416-440 33-57 (351)
169 PLN02318 phosphoribulokinase/u 93.8 0.042 9.1E-07 60.4 3.0 27 413-439 63-89 (656)
170 cd01854 YjeQ_engC YjeQ/EngC. 93.8 0.039 8.4E-07 55.3 2.6 25 416-440 162-186 (287)
171 PRK10463 hydrogenase nickel in 93.8 0.067 1.5E-06 54.0 4.3 28 415-442 104-131 (290)
172 PRK14258 phosphate ABC transpo 93.8 0.024 5.2E-07 55.6 1.0 25 416-440 34-58 (261)
173 TIGR02633 xylG D-xylose ABC tr 93.8 0.026 5.7E-07 60.5 1.4 24 416-439 287-310 (500)
174 PRK13409 putative ATPase RIL; 93.8 0.026 5.6E-07 62.3 1.3 28 416-443 100-127 (590)
175 TIGR02538 type_IV_pilB type IV 93.8 0.042 9.1E-07 60.3 3.0 24 416-439 317-340 (564)
176 PRK14236 phosphate transporter 93.8 0.023 5E-07 56.2 0.8 24 416-439 52-75 (272)
177 PRK10636 putative ABC transpor 93.8 0.017 3.7E-07 64.1 -0.1 24 416-439 339-362 (638)
178 cd00820 PEPCK_HprK Phosphoenol 93.7 0.046 1E-06 47.2 2.5 21 416-436 16-36 (107)
179 PRK13543 cytochrome c biogenes 93.7 0.028 6E-07 53.5 1.3 24 416-439 38-61 (214)
180 PRK10938 putative molybdenum t 93.7 0.024 5.1E-07 60.7 0.9 23 416-438 287-309 (490)
181 PRK13643 cbiO cobalt transport 93.7 0.016 3.5E-07 57.9 -0.4 24 416-439 33-56 (288)
182 PRK14260 phosphate ABC transpo 93.7 0.026 5.6E-07 55.3 1.0 25 416-440 34-58 (259)
183 PRK10419 nikE nickel transport 93.7 0.025 5.5E-07 55.8 0.9 24 416-439 39-62 (268)
184 COG1119 ModF ABC-type molybden 93.7 0.033 7.2E-07 54.8 1.7 24 416-439 58-81 (257)
185 PRK12402 replication factor C 93.7 0.083 1.8E-06 53.1 4.6 24 417-440 38-61 (337)
186 TIGR03719 ABC_ABC_ChvD ATP-bin 93.7 0.015 3.3E-07 63.3 -0.8 24 416-439 349-372 (552)
187 PRK13642 cbiO cobalt transport 93.6 0.017 3.8E-07 57.2 -0.3 25 416-440 34-58 (277)
188 KOG0859 Synaptobrevin/VAMP-lik 93.6 0.67 1.5E-05 44.1 10.1 105 4-119 4-113 (217)
189 PRK06921 hypothetical protein; 93.6 0.066 1.4E-06 53.2 3.7 28 415-442 117-144 (266)
190 PRK15134 microcin C ABC transp 93.6 0.026 5.7E-07 61.0 0.9 33 405-439 27-59 (529)
191 cd03213 ABCG_EPDR ABCG transpo 93.6 0.02 4.2E-07 53.8 -0.1 24 416-439 36-59 (194)
192 TIGR02782 TrbB_P P-type conjug 93.6 0.054 1.2E-06 54.8 3.1 26 416-441 133-158 (299)
193 PRK15455 PrkA family serine pr 93.6 0.089 1.9E-06 57.8 4.9 27 415-441 103-129 (644)
194 PRK10436 hypothetical protein; 93.5 0.051 1.1E-06 58.3 3.0 24 416-439 219-242 (462)
195 smart00763 AAA_PrkA PrkA AAA d 93.5 0.065 1.4E-06 55.6 3.7 28 414-441 77-104 (361)
196 PRK13851 type IV secretion sys 93.5 0.039 8.4E-07 57.0 2.0 24 416-439 163-186 (344)
197 PRK10982 galactose/methyl gala 93.5 0.018 3.8E-07 61.7 -0.5 24 416-439 275-298 (491)
198 COG1136 SalX ABC-type antimicr 93.5 0.033 7.1E-07 54.2 1.4 37 401-439 19-55 (226)
199 TIGR02533 type_II_gspE general 93.5 0.042 9.2E-07 59.2 2.4 24 416-439 243-266 (486)
200 PRK14271 phosphate ABC transpo 93.5 0.029 6.2E-07 55.7 1.0 24 416-439 48-71 (276)
201 PRK10261 glutathione transport 93.5 0.017 3.7E-07 63.9 -0.7 35 404-440 33-67 (623)
202 PRK14246 phosphate ABC transpo 93.5 0.029 6.3E-07 55.1 1.0 24 416-439 37-60 (257)
203 TIGR02982 heterocyst_DevA ABC 93.5 0.017 3.6E-07 55.1 -0.7 24 416-439 32-55 (220)
204 COG1134 TagH ABC-type polysacc 93.4 0.051 1.1E-06 53.3 2.6 53 385-439 22-77 (249)
205 PRK14237 phosphate transporter 93.4 0.052 1.1E-06 53.5 2.7 24 416-439 47-70 (267)
206 PRK13900 type IV secretion sys 93.4 0.046 1E-06 56.1 2.3 24 416-439 161-184 (332)
207 PRK11819 putative ABC transpor 93.4 0.019 4E-07 62.7 -0.6 24 416-439 351-374 (556)
208 PF03215 Rad17: Rad17 cell cyc 93.4 0.12 2.6E-06 56.3 5.6 25 415-439 45-69 (519)
209 PRK11147 ABC transporter ATPas 93.4 0.02 4.3E-07 63.5 -0.5 24 416-439 346-369 (635)
210 PRK15439 autoinducer 2 ABC tra 93.3 0.022 4.7E-07 61.5 -0.3 24 416-439 290-313 (510)
211 PRK10762 D-ribose transporter 93.3 0.023 5.1E-07 61.0 -0.1 24 416-439 279-302 (501)
212 PLN03073 ABC transporter F fam 93.3 0.027 5.8E-07 63.5 0.4 32 404-437 194-225 (718)
213 PRK15134 microcin C ABC transp 93.2 0.026 5.6E-07 61.1 0.2 35 403-439 302-336 (529)
214 PRK00098 GTPase RsgA; Reviewed 93.2 0.039 8.4E-07 55.6 1.4 24 416-439 165-188 (298)
215 COG3910 Predicted ATPase [Gene 93.2 0.069 1.5E-06 50.9 2.9 26 414-439 36-61 (233)
216 TIGR03269 met_CoM_red_A2 methy 93.2 0.02 4.4E-07 61.7 -0.8 34 404-439 301-334 (520)
217 COG0466 Lon ATP-dependent Lon 93.2 0.63 1.4E-05 52.1 10.6 28 416-443 351-378 (782)
218 PRK13833 conjugal transfer pro 93.2 0.069 1.5E-06 54.7 3.1 25 416-440 145-169 (323)
219 PRK06851 hypothetical protein; 93.2 0.27 5.9E-06 51.2 7.5 94 338-442 148-241 (367)
220 COG5008 PilU Tfp pilus assembl 93.1 0.072 1.6E-06 53.2 3.0 23 416-438 128-150 (375)
221 PRK10787 DNA-binding ATP-depen 93.1 0.6 1.3E-05 53.3 10.9 28 415-442 349-376 (784)
222 TIGR03258 PhnT 2-aminoethylpho 93.1 0.06 1.3E-06 55.9 2.6 25 416-440 32-56 (362)
223 PRK11022 dppD dipeptide transp 93.0 0.034 7.3E-07 56.8 0.6 33 405-439 25-57 (326)
224 PF01695 IstB_IS21: IstB-like 93.0 0.12 2.6E-06 48.2 4.2 27 415-441 47-73 (178)
225 PRK05537 bifunctional sulfate 93.0 0.24 5.1E-06 54.6 7.1 29 413-441 390-418 (568)
226 PRK14252 phosphate ABC transpo 92.9 0.069 1.5E-06 52.5 2.7 24 416-439 43-66 (265)
227 PRK10070 glycine betaine trans 92.9 0.041 8.8E-07 57.9 1.1 24 416-439 55-78 (400)
228 PRK05342 clpX ATP-dependent pr 92.9 0.21 4.6E-06 52.8 6.4 24 416-439 109-132 (412)
229 COG0488 Uup ATPase components 92.8 0.063 1.4E-06 58.5 2.4 24 415-438 348-371 (530)
230 PLN03025 replication factor C 92.8 0.14 3E-06 51.9 4.7 24 417-440 36-59 (319)
231 PRK14264 phosphate ABC transpo 92.7 0.076 1.6E-06 53.5 2.7 24 416-439 72-95 (305)
232 PRK13342 recombination factor 92.7 0.11 2.3E-06 54.8 3.9 29 412-440 33-61 (413)
233 PRK12377 putative replication 92.7 0.1 2.2E-06 51.4 3.5 28 415-442 101-128 (248)
234 TIGR00150 HI0065_YjeE ATPase, 92.6 0.092 2E-06 47.0 2.8 24 416-439 23-46 (133)
235 PLN03073 ABC transporter F fam 92.6 0.029 6.4E-07 63.2 -0.4 24 416-439 536-559 (718)
236 PRK07952 DNA replication prote 92.6 0.097 2.1E-06 51.5 3.2 27 416-442 100-126 (244)
237 TIGR03018 pepcterm_TyrKin exop 92.6 0.14 3.1E-06 48.4 4.2 31 414-444 34-65 (207)
238 PRK13545 tagH teichoic acids e 92.5 0.027 5.9E-07 61.2 -0.9 24 416-439 51-74 (549)
239 COG2804 PulE Type II secretory 92.5 0.088 1.9E-06 56.6 2.9 26 416-441 259-284 (500)
240 PRK14263 phosphate ABC transpo 92.5 0.087 1.9E-06 51.8 2.7 24 416-439 35-58 (261)
241 cd02033 BchX Chlorophyllide re 92.5 0.13 2.7E-06 52.9 3.9 31 412-442 28-58 (329)
242 PRK15093 antimicrobial peptide 92.4 0.048 1.1E-06 55.6 0.8 24 416-439 34-57 (330)
243 PRK00411 cdc6 cell division co 92.4 0.17 3.8E-06 52.2 4.9 30 413-442 53-82 (394)
244 PRK00440 rfc replication facto 92.3 0.18 3.8E-06 50.2 4.7 24 417-440 40-63 (319)
245 TIGR00382 clpX endopeptidase C 92.3 0.19 4.2E-06 53.1 5.1 25 415-439 116-140 (413)
246 PRK13894 conjugal transfer ATP 92.3 0.1 2.3E-06 53.3 3.1 24 416-439 149-172 (319)
247 PRK14257 phosphate ABC transpo 92.3 0.05 1.1E-06 55.7 0.7 33 405-439 100-132 (329)
248 PRK09452 potA putrescine/sperm 92.2 0.056 1.2E-06 56.4 1.0 25 416-440 41-65 (375)
249 TIGR02858 spore_III_AA stage I 92.2 0.1 2.2E-06 52.1 2.9 29 413-441 109-137 (270)
250 PRK11607 potG putrescine trans 92.2 0.094 2E-06 54.7 2.6 24 416-439 46-69 (377)
251 cd01878 HflX HflX subfamily. 92.2 0.1 2.2E-06 48.7 2.6 22 416-437 42-63 (204)
252 TIGR02868 CydC thiol reductant 92.2 0.042 9E-07 59.3 -0.0 39 402-442 350-388 (529)
253 PF05272 VirE: Virulence-assoc 92.1 0.23 4.9E-06 47.3 4.9 41 383-437 34-74 (198)
254 TIGR03415 ABC_choXWV_ATP choli 92.1 0.061 1.3E-06 56.3 1.1 25 416-440 51-75 (382)
255 PF05496 RuvB_N: Holliday junc 92.0 0.38 8.1E-06 47.0 6.4 28 415-442 50-77 (233)
256 PRK08903 DnaA regulatory inact 92.0 0.16 3.5E-06 48.5 3.8 27 415-441 42-68 (227)
257 PRK14964 DNA polymerase III su 92.0 0.18 4E-06 54.5 4.6 28 414-441 34-61 (491)
258 TIGR03238 dnd_assoc_3 dnd syst 91.9 0.098 2.1E-06 56.2 2.4 18 416-433 33-50 (504)
259 PRK06645 DNA polymerase III su 91.9 0.19 4.1E-06 54.6 4.6 28 414-441 42-69 (507)
260 TIGR02928 orc1/cdc6 family rep 91.9 0.21 4.5E-06 50.9 4.7 29 413-441 38-66 (365)
261 KOG1970 Checkpoint RAD17-RFC c 91.9 0.26 5.7E-06 53.5 5.5 24 416-439 111-134 (634)
262 TIGR00157 ribosome small subun 91.9 0.13 2.7E-06 50.5 3.0 25 416-440 121-145 (245)
263 PRK06835 DNA replication prote 91.8 0.13 2.9E-06 52.7 3.2 27 416-442 184-210 (329)
264 PRK11308 dppF dipeptide transp 91.8 0.039 8.5E-07 56.3 -0.7 33 405-439 33-65 (327)
265 PRK10261 glutathione transport 91.7 0.042 9E-07 60.9 -0.7 24 416-439 351-374 (623)
266 PLN02674 adenylate kinase 91.7 0.12 2.6E-06 50.9 2.6 26 415-440 31-56 (244)
267 PRK14489 putative bifunctional 91.6 0.17 3.7E-06 52.5 3.8 29 414-442 204-232 (366)
268 PRK08099 bifunctional DNA-bind 91.6 0.15 3.2E-06 53.7 3.3 27 413-439 217-243 (399)
269 COG1132 MdlB ABC-type multidru 91.6 0.065 1.4E-06 58.4 0.6 29 416-444 356-384 (567)
270 COG1117 PstB ABC-type phosphat 91.5 0.11 2.3E-06 50.5 2.0 22 416-437 34-55 (253)
271 TIGR00954 3a01203 Peroxysomal 91.5 0.054 1.2E-06 60.4 -0.1 25 416-440 479-503 (659)
272 TIGR01242 26Sp45 26S proteasom 91.4 0.12 2.6E-06 53.4 2.4 27 414-440 155-181 (364)
273 COG1484 DnaC DNA replication p 91.4 0.17 3.7E-06 49.9 3.4 27 414-440 104-130 (254)
274 PLN02348 phosphoribulokinase 91.4 0.21 4.5E-06 52.5 4.1 30 412-441 46-75 (395)
275 PRK13409 putative ATPase RIL; 91.3 0.082 1.8E-06 58.4 1.1 24 416-439 366-389 (590)
276 TIGR01650 PD_CobS cobaltochela 91.3 0.25 5.3E-06 50.7 4.5 24 417-440 66-89 (327)
277 COG1084 Predicted GTPase [Gene 91.3 0.58 1.3E-05 48.0 7.1 103 333-436 73-189 (346)
278 PTZ00202 tuzin; Provisional 91.3 0.17 3.7E-06 54.1 3.4 26 414-439 285-310 (550)
279 PRK10789 putative multidrug tr 91.2 0.07 1.5E-06 58.3 0.5 27 416-442 342-368 (569)
280 PTZ00035 Rad51 protein; Provis 91.2 0.66 1.4E-05 47.8 7.6 81 347-439 60-142 (337)
281 PRK14961 DNA polymerase III su 91.2 0.28 6E-06 50.8 4.8 27 414-440 37-63 (363)
282 PRK14963 DNA polymerase III su 91.1 0.29 6.4E-06 53.1 5.1 28 414-441 35-62 (504)
283 PRK08181 transposase; Validate 91.1 0.21 4.6E-06 49.8 3.7 28 415-442 106-133 (269)
284 PRK10522 multidrug transporter 91.0 0.058 1.2E-06 58.6 -0.4 25 416-440 350-374 (547)
285 TIGR00958 3a01208 Conjugate Tr 91.0 0.083 1.8E-06 59.4 0.8 38 403-442 497-534 (711)
286 KOG0058 Peptide exporter, ABC 91.0 0.14 3E-06 57.0 2.5 36 402-439 483-518 (716)
287 KOG0927 Predicted transporter 90.9 0.11 2.4E-06 56.2 1.6 22 418-439 419-440 (614)
288 PHA02544 44 clamp loader, smal 90.9 0.19 4.1E-06 50.4 3.2 26 414-439 42-67 (316)
289 PRK14956 DNA polymerase III su 90.9 0.27 5.9E-06 53.0 4.4 27 415-441 40-66 (484)
290 PRK08084 DNA replication initi 90.8 0.35 7.5E-06 46.9 4.9 26 416-441 46-71 (235)
291 TIGR02236 recomb_radA DNA repa 90.8 0.53 1.2E-05 47.3 6.4 26 415-440 95-120 (310)
292 PRK14962 DNA polymerase III su 90.8 0.19 4.2E-06 54.0 3.3 28 414-441 35-62 (472)
293 PRK00080 ruvB Holliday junctio 90.7 0.2 4.2E-06 51.0 3.1 27 414-440 50-76 (328)
294 PTZ00265 multidrug resistance 90.7 0.1 2.3E-06 63.3 1.3 40 403-444 401-440 (1466)
295 PRK08691 DNA polymerase III su 90.6 0.37 8E-06 54.1 5.3 28 414-441 37-64 (709)
296 PRK14960 DNA polymerase III su 90.6 0.29 6.2E-06 54.7 4.5 27 415-441 37-63 (702)
297 PRK06893 DNA replication initi 90.6 0.24 5.1E-06 47.9 3.5 26 417-442 41-66 (229)
298 PRK11160 cysteine/glutathione 90.6 0.08 1.7E-06 58.0 0.2 38 403-442 356-393 (574)
299 COG4181 Predicted ABC-type tra 90.6 0.11 2.4E-06 49.0 1.0 37 399-437 22-58 (228)
300 TIGR01526 nadR_NMN_Atrans nico 90.5 0.2 4.3E-06 51.2 3.0 24 416-439 163-186 (325)
301 PRK07003 DNA polymerase III su 90.4 0.31 6.7E-06 55.2 4.6 27 415-441 38-64 (830)
302 PTZ00454 26S protease regulato 90.4 0.46 9.9E-06 50.1 5.7 26 414-439 178-203 (398)
303 PRK14958 DNA polymerase III su 90.4 0.31 6.6E-06 53.0 4.4 28 414-441 37-64 (509)
304 PRK09473 oppD oligopeptide tra 90.4 0.093 2E-06 53.7 0.4 33 405-439 34-66 (330)
305 PRK12323 DNA polymerase III su 90.3 0.34 7.3E-06 54.1 4.7 28 414-441 37-64 (700)
306 PRK15079 oligopeptide ABC tran 90.3 0.12 2.6E-06 52.9 1.2 24 416-439 48-71 (331)
307 cd01882 BMS1 Bms1. Bms1 is an 90.3 0.24 5.1E-06 47.8 3.1 27 413-439 37-63 (225)
308 PRK14949 DNA polymerase III su 90.2 0.27 5.9E-06 56.5 4.0 28 414-441 37-64 (944)
309 TIGR03796 NHPM_micro_ABC1 NHPM 90.2 0.1 2.3E-06 58.4 0.7 38 403-442 495-532 (710)
310 PTZ00361 26 proteosome regulat 90.2 0.19 4.1E-06 53.6 2.6 27 414-440 216-242 (438)
311 TIGR01192 chvA glucan exporter 90.2 0.092 2E-06 57.7 0.2 26 416-441 362-387 (585)
312 PRK13477 bifunctional pantoate 90.2 0.22 4.8E-06 54.1 3.1 26 414-439 283-308 (512)
313 COG1245 Predicted ATPase, RNas 90.2 0.15 3.2E-06 54.4 1.7 29 416-444 101-129 (591)
314 KOG0743 AAA+-type ATPase [Post 90.1 0.31 6.6E-06 51.8 4.0 30 411-440 229-260 (457)
315 PRK13341 recombination factor 90.1 0.31 6.7E-06 55.2 4.3 28 413-440 50-77 (725)
316 TIGR02397 dnaX_nterm DNA polym 90.0 0.41 8.9E-06 48.5 4.8 27 414-440 35-61 (355)
317 PLN03140 ABC transporter G fam 90.0 0.16 3.6E-06 61.6 2.1 39 400-440 178-216 (1470)
318 PRK11176 lipid transporter ATP 90.0 0.14 3E-06 55.9 1.4 26 416-441 370-395 (582)
319 TIGR03819 heli_sec_ATPase heli 90.0 0.17 3.6E-06 52.2 1.9 25 416-440 179-203 (340)
320 PLN03211 ABC transporter G-25; 90.0 0.12 2.6E-06 57.8 0.9 25 416-440 95-119 (659)
321 KOG0055 Multidrug/pheromone ex 89.9 0.15 3.3E-06 59.9 1.7 46 396-443 361-407 (1228)
322 TIGR03375 type_I_sec_LssB type 89.8 0.11 2.3E-06 58.2 0.4 27 416-442 492-518 (694)
323 PRK09111 DNA polymerase III su 89.8 0.36 7.9E-06 53.4 4.5 28 414-441 45-72 (598)
324 KOG0989 Replication factor C, 89.8 0.5 1.1E-05 48.1 5.1 24 416-439 58-81 (346)
325 TIGR03797 NHPM_micro_ABC2 NHPM 89.8 0.11 2.3E-06 58.1 0.4 27 416-442 480-506 (686)
326 PRK08939 primosomal protein Dn 89.7 0.32 7E-06 49.4 3.7 28 415-442 156-183 (306)
327 TIGR02204 MsbA_rel ABC transpo 89.7 0.13 2.8E-06 56.0 0.9 38 402-441 355-392 (576)
328 TIGR00602 rad24 checkpoint pro 89.7 0.49 1.1E-05 52.7 5.4 25 416-440 111-135 (637)
329 PRK09112 DNA polymerase III su 89.6 0.43 9.2E-06 49.4 4.6 28 414-441 44-71 (351)
330 PRK08154 anaerobic benzoate ca 89.6 0.49 1.1E-05 47.9 5.0 26 414-439 132-157 (309)
331 PRK11174 cysteine/glutathione 89.6 0.097 2.1E-06 57.2 -0.1 24 416-439 377-400 (588)
332 TIGR02203 MsbA_lipidA lipid A 89.6 0.13 2.8E-06 55.9 0.8 27 416-442 359-385 (571)
333 PRK13657 cyclic beta-1,2-gluca 89.5 0.11 2.4E-06 56.9 0.1 38 403-442 351-388 (588)
334 TIGR01257 rim_protein retinal- 89.5 0.087 1.9E-06 65.7 -0.7 25 416-440 1966-1990(2272)
335 PRK03992 proteasome-activating 89.4 0.28 6.1E-06 51.3 3.1 27 414-440 164-190 (389)
336 TIGR02857 CydD thiol reductant 89.3 0.13 2.8E-06 55.5 0.5 25 416-440 349-373 (529)
337 COG4674 Uncharacterized ABC-ty 89.3 0.13 2.8E-06 49.4 0.5 18 416-433 32-49 (249)
338 COG4107 PhnK ABC-type phosphon 89.3 0.25 5.4E-06 46.8 2.3 47 390-441 12-58 (258)
339 PRK14952 DNA polymerase III su 89.2 0.37 8E-06 53.2 3.9 27 414-440 34-60 (584)
340 TIGR01842 type_I_sec_PrtD type 89.2 0.14 3.1E-06 55.5 0.8 25 416-440 345-369 (544)
341 TIGR01193 bacteriocin_ABC ABC- 89.2 0.12 2.7E-06 57.8 0.3 25 416-440 501-525 (708)
342 TIGR01241 FtsH_fam ATP-depende 89.1 0.41 8.9E-06 51.6 4.2 26 414-439 87-112 (495)
343 TIGR01194 cyc_pep_trnsptr cycl 89.1 0.11 2.4E-06 56.7 -0.2 26 416-441 369-394 (555)
344 TIGR01663 PNK-3'Pase polynucle 89.1 0.31 6.7E-06 53.1 3.2 26 412-437 366-391 (526)
345 PRK14955 DNA polymerase III su 88.9 0.55 1.2E-05 49.2 4.9 28 414-441 37-64 (397)
346 PRK08727 hypothetical protein; 88.9 0.36 7.8E-06 46.8 3.2 27 416-442 42-68 (233)
347 PRK14957 DNA polymerase III su 88.8 0.44 9.5E-06 52.2 4.2 28 414-441 37-64 (546)
348 cd01857 HSR1_MMR1 HSR1/MMR1. 88.8 0.32 7E-06 43.0 2.6 20 417-436 85-104 (141)
349 PRK05896 DNA polymerase III su 88.8 0.44 9.5E-06 52.7 4.1 28 414-441 37-64 (605)
350 TIGR03878 thermo_KaiC_2 KaiC d 88.5 0.46 1E-05 46.9 3.8 28 415-442 36-63 (259)
351 TIGR00376 DNA helicase, putati 88.5 0.37 8.1E-06 53.7 3.5 27 416-442 174-200 (637)
352 PRK14965 DNA polymerase III su 88.5 0.63 1.4E-05 51.3 5.2 28 414-441 37-64 (576)
353 TIGR00665 DnaB replicative DNA 88.5 4.3 9.3E-05 42.8 11.3 28 416-443 196-223 (434)
354 CHL00195 ycf46 Ycf46; Provisio 88.4 2.3 5E-05 46.1 9.2 26 414-439 258-283 (489)
355 PRK14951 DNA polymerase III su 88.3 0.49 1.1E-05 52.6 4.2 28 414-441 37-64 (618)
356 cd01853 Toc34_like Toc34-like 88.3 0.35 7.5E-06 47.7 2.7 23 414-436 30-52 (249)
357 COG5192 BMS1 GTP-binding prote 88.3 0.44 9.6E-06 51.9 3.6 29 413-441 67-95 (1077)
358 COG1474 CDC6 Cdc6-related prot 88.2 0.54 1.2E-05 49.0 4.1 31 412-442 39-69 (366)
359 PRK01889 GTPase RsgA; Reviewed 88.1 0.46 1E-05 49.2 3.6 25 416-440 196-220 (356)
360 PRK14969 DNA polymerase III su 88.1 0.52 1.1E-05 51.4 4.1 27 414-440 37-63 (527)
361 TIGR00767 rho transcription te 88.1 0.39 8.5E-06 50.7 3.1 29 414-442 167-195 (415)
362 PRK08116 hypothetical protein; 88.1 0.45 9.7E-06 47.3 3.4 27 416-442 115-141 (268)
363 PRK11331 5-methylcytosine-spec 88.1 0.36 7.9E-06 51.6 2.9 25 416-440 195-219 (459)
364 TIGR01846 type_I_sec_HlyB type 88.0 0.19 4.2E-06 56.2 0.8 26 416-441 484-509 (694)
365 CHL00095 clpC Clp protease ATP 88.0 0.5 1.1E-05 54.3 4.1 28 414-441 199-226 (821)
366 PLN02772 guanylate kinase 87.9 0.36 7.9E-06 50.7 2.7 25 415-439 135-159 (398)
367 PRK07196 fliI flagellum-specif 87.9 0.3 6.5E-06 52.0 2.1 24 416-439 156-179 (434)
368 PRK12289 GTPase RsgA; Reviewed 87.9 0.36 7.8E-06 50.0 2.6 22 416-437 173-194 (352)
369 PRK14950 DNA polymerase III su 87.9 0.56 1.2E-05 51.8 4.3 27 414-440 37-63 (585)
370 COG1341 Predicted GTPase or GT 87.9 0.49 1.1E-05 49.6 3.6 31 412-442 70-100 (398)
371 COG4987 CydC ABC-type transpor 87.8 0.29 6.3E-06 53.0 1.9 39 402-442 353-391 (573)
372 PRK10535 macrolide transporter 87.7 0.14 3E-06 57.1 -0.6 24 416-439 35-58 (648)
373 PF01580 FtsK_SpoIIIE: FtsK/Sp 87.7 0.49 1.1E-05 44.4 3.2 26 417-442 40-65 (205)
374 PRK12288 GTPase RsgA; Reviewed 87.6 0.29 6.3E-06 50.6 1.8 23 416-438 206-228 (347)
375 PRK07994 DNA polymerase III su 87.6 0.61 1.3E-05 52.1 4.4 29 414-442 37-65 (647)
376 PLN03187 meiotic recombination 87.5 1.8 3.9E-05 44.8 7.4 108 319-440 42-151 (344)
377 cd01859 MJ1464 MJ1464. This f 87.4 0.87 1.9E-05 40.6 4.5 24 414-437 100-123 (156)
378 PRK06305 DNA polymerase III su 87.4 1.1 2.3E-05 48.0 5.9 28 414-441 38-65 (451)
379 COG1245 Predicted ATPase, RNas 87.3 0.39 8.5E-06 51.3 2.5 25 416-440 368-392 (591)
380 PRK05642 DNA replication initi 87.3 0.55 1.2E-05 45.6 3.4 26 416-441 46-71 (234)
381 KOG0979 Structural maintenance 87.3 0.37 8.1E-06 55.2 2.5 26 414-439 41-66 (1072)
382 PRK10790 putative multidrug tr 87.3 0.18 3.9E-06 55.2 0.0 37 403-441 357-393 (592)
383 PRK14970 DNA polymerase III su 87.3 0.77 1.7E-05 47.2 4.7 28 414-441 38-65 (367)
384 cd01849 YlqF_related_GTPase Yl 87.1 0.52 1.1E-05 42.3 2.9 24 414-437 99-122 (155)
385 PF01217 Clat_adaptor_s: Clath 87.1 5.4 0.00012 35.4 9.4 92 1-100 1-96 (141)
386 TIGR03345 VI_ClpV1 type VI sec 87.0 0.63 1.4E-05 53.7 4.2 29 412-440 205-233 (852)
387 PF00308 Bac_DnaA: Bacterial d 87.0 0.63 1.4E-05 44.8 3.6 26 417-442 36-61 (219)
388 PHA02244 ATPase-like protein 86.8 0.49 1.1E-05 49.5 2.9 24 417-440 121-144 (383)
389 PRK10865 protein disaggregatio 86.8 0.63 1.4E-05 53.7 4.0 28 414-441 198-225 (857)
390 PRK14954 DNA polymerase III su 86.8 0.81 1.8E-05 50.9 4.7 28 414-441 37-64 (620)
391 TIGR03689 pup_AAA proteasome A 86.7 0.79 1.7E-05 49.9 4.5 28 414-441 215-242 (512)
392 TIGR01447 recD exodeoxyribonuc 86.7 0.57 1.2E-05 51.8 3.5 26 416-441 161-186 (586)
393 cd04178 Nucleostemin_like Nucl 86.7 0.68 1.5E-05 43.0 3.5 24 414-437 116-139 (172)
394 TIGR01069 mutS2 MutS2 family p 86.7 0.59 1.3E-05 53.3 3.7 23 416-438 323-345 (771)
395 PRK05506 bifunctional sulfate 86.7 0.55 1.2E-05 52.2 3.4 29 413-441 458-486 (632)
396 PRK07133 DNA polymerase III su 86.7 0.68 1.5E-05 52.3 4.1 28 414-441 39-66 (725)
397 TIGR02238 recomb_DMC1 meiotic 86.6 1.9 4.2E-05 43.9 7.1 81 347-439 38-120 (313)
398 TIGR03346 chaperone_ClpB ATP-d 86.6 0.68 1.5E-05 53.4 4.2 29 413-441 192-220 (852)
399 COG1219 ClpX ATP-dependent pro 86.6 0.52 1.1E-05 48.4 2.8 24 416-439 98-121 (408)
400 TIGR00955 3a01204 The Eye Pigm 86.5 0.31 6.6E-06 54.0 1.3 36 402-439 40-75 (617)
401 PTZ00265 multidrug resistance 86.4 0.3 6.5E-06 59.4 1.2 25 416-440 1195-1219(1466)
402 COG3451 VirB4 Type IV secretor 86.3 0.57 1.2E-05 53.6 3.3 27 417-443 438-464 (796)
403 PRK14088 dnaA chromosomal repl 86.2 0.69 1.5E-05 49.3 3.7 28 415-442 130-157 (440)
404 TIGR01271 CFTR_protein cystic 86.2 0.2 4.4E-06 60.9 -0.3 36 403-440 442-477 (1490)
405 KOG0055 Multidrug/pheromone ex 86.0 0.48 1E-05 55.9 2.6 24 416-439 1017-1040(1228)
406 TIGR01257 rim_protein retinal- 86.0 0.46 9.9E-06 59.6 2.5 24 416-439 957-980 (2272)
407 PF13481 AAA_25: AAA domain; P 85.9 0.79 1.7E-05 42.2 3.6 26 416-441 33-58 (193)
408 COG0771 MurD UDP-N-acetylmuram 85.9 0.55 1.2E-05 50.2 2.8 22 420-441 112-134 (448)
409 TIGR02639 ClpA ATP-dependent C 85.9 0.85 1.9E-05 51.7 4.4 28 414-441 202-229 (731)
410 PF12775 AAA_7: P-loop contain 85.8 0.43 9.4E-06 47.6 1.9 19 416-434 34-52 (272)
411 cd01855 YqeH YqeH. YqeH is an 85.8 0.58 1.3E-05 43.3 2.6 23 416-438 128-150 (190)
412 COG2274 SunT ABC-type bacterio 85.7 0.33 7.2E-06 54.8 1.1 28 416-443 500-527 (709)
413 PRK07764 DNA polymerase III su 85.7 0.75 1.6E-05 52.8 3.9 28 414-441 36-63 (824)
414 PRK07471 DNA polymerase III su 85.7 1.1 2.3E-05 46.7 4.8 28 414-441 40-67 (365)
415 TIGR01243 CDC48 AAA family ATP 85.6 0.61 1.3E-05 52.8 3.1 26 414-439 211-236 (733)
416 COG2256 MGS1 ATPase related to 85.6 0.72 1.6E-05 48.5 3.3 31 411-441 44-74 (436)
417 PRK00683 murD UDP-N-acetylmura 85.5 0.61 1.3E-05 49.0 2.9 23 420-442 104-127 (418)
418 TIGR01243 CDC48 AAA family ATP 85.5 1.1 2.4E-05 50.7 5.1 27 414-440 486-512 (733)
419 COG1855 ATPase (PilT family) [ 85.3 0.71 1.5E-05 49.3 3.2 29 414-442 262-290 (604)
420 PRK05563 DNA polymerase III su 85.3 1.3 2.8E-05 48.8 5.3 27 414-440 37-63 (559)
421 COG1162 Predicted GTPases [Gen 85.2 0.51 1.1E-05 47.9 2.0 23 415-437 164-186 (301)
422 PRK08451 DNA polymerase III su 85.1 1.1 2.3E-05 49.1 4.5 27 414-440 35-61 (535)
423 PRK07940 DNA polymerase III su 85.0 1.7 3.8E-05 45.7 6.0 28 414-441 35-62 (394)
424 COG4962 CpaF Flp pilus assembl 85.0 0.56 1.2E-05 48.4 2.2 24 416-439 174-197 (355)
425 TIGR00956 3a01205 Pleiotropic 85.0 0.81 1.8E-05 55.5 3.9 36 402-439 76-111 (1394)
426 TIGR01087 murD UDP-N-acetylmur 85.0 0.66 1.4E-05 48.8 2.8 23 420-442 104-127 (433)
427 TIGR00362 DnaA chromosomal rep 84.9 0.82 1.8E-05 47.8 3.5 27 416-442 137-163 (405)
428 PRK05291 trmE tRNA modificatio 84.9 3.3 7.1E-05 44.3 8.1 23 415-437 215-237 (449)
429 PRK01438 murD UDP-N-acetylmura 84.9 0.67 1.4E-05 49.4 2.9 23 420-442 124-147 (480)
430 cd01121 Sms Sms (bacterial rad 84.8 0.93 2E-05 47.4 3.8 27 416-442 83-109 (372)
431 PRK04301 radA DNA repair and r 84.8 0.75 1.6E-05 46.6 3.1 26 415-440 102-127 (317)
432 PRK01390 murD UDP-N-acetylmura 84.8 0.67 1.5E-05 49.2 2.8 23 420-442 116-139 (460)
433 COG1127 Ttg2A ABC-type transpo 84.8 0.33 7.1E-06 47.9 0.4 29 410-440 31-59 (263)
434 PRK03806 murD UDP-N-acetylmura 84.7 0.7 1.5E-05 48.7 2.9 22 420-441 107-129 (438)
435 PRK14953 DNA polymerase III su 84.7 1.2 2.6E-05 48.1 4.7 26 415-440 38-63 (486)
436 CHL00176 ftsH cell division pr 84.6 1.3 2.8E-05 49.5 5.0 27 413-439 214-240 (638)
437 PRK06647 DNA polymerase III su 84.6 1.2 2.5E-05 49.2 4.6 28 414-441 37-64 (563)
438 PRK12608 transcription termina 84.6 0.93 2E-05 47.5 3.7 29 415-443 133-161 (380)
439 TIGR00993 3a0901s04IAP86 chlor 84.5 0.7 1.5E-05 51.7 2.8 23 415-437 118-140 (763)
440 PLN03140 ABC transporter G fam 84.5 0.37 8E-06 58.7 0.7 23 416-438 907-929 (1470)
441 TIGR00416 sms DNA repair prote 84.4 0.93 2E-05 48.6 3.7 27 416-442 95-121 (454)
442 cd01127 TrwB Bacterial conjuga 84.4 0.85 1.8E-05 48.0 3.4 28 415-442 42-69 (410)
443 TIGR00956 3a01205 Pleiotropic 84.4 0.39 8.5E-06 58.2 0.9 24 416-439 790-813 (1394)
444 COG5545 Predicted P-loop ATPas 84.3 2.2 4.7E-05 44.7 6.1 41 382-436 183-223 (517)
445 PRK04663 murD UDP-N-acetylmura 84.3 0.74 1.6E-05 48.7 2.9 22 420-441 110-132 (438)
446 PRK00421 murC UDP-N-acetylmura 84.2 0.72 1.6E-05 49.0 2.8 23 420-442 109-132 (461)
447 TIGR00957 MRP_assoc_pro multi 84.1 0.29 6.2E-06 59.8 -0.3 26 416-441 665-690 (1522)
448 PTZ00243 ABC transporter; Prov 84.1 0.26 5.6E-06 60.3 -0.7 41 402-444 675-715 (1560)
449 PRK00141 murD UDP-N-acetylmura 84.1 0.75 1.6E-05 49.3 2.8 23 420-442 123-146 (473)
450 KOG0056 Heavy metal exporter H 84.1 0.71 1.5E-05 49.9 2.5 40 403-444 554-593 (790)
451 TIGR01143 murF UDP-N-acetylmur 84.0 0.74 1.6E-05 48.3 2.7 24 419-442 75-99 (417)
452 PLN03232 ABC transporter C fam 84.0 0.35 7.5E-06 59.0 0.3 26 416-441 1263-1288(1495)
453 PRK03803 murD UDP-N-acetylmura 84.0 0.77 1.7E-05 48.6 2.8 23 420-442 110-133 (448)
454 KOG0057 Mitochondrial Fe/S clu 83.9 0.56 1.2E-05 51.0 1.7 25 416-440 379-403 (591)
455 cd03287 ABC_MSH3_euk MutS3 hom 83.9 1.2 2.7E-05 43.0 4.0 23 415-437 31-53 (222)
456 PRK12422 chromosomal replicati 83.9 0.93 2E-05 48.5 3.4 26 417-442 143-168 (445)
457 PRK02472 murD UDP-N-acetylmura 83.9 0.79 1.7E-05 48.2 2.9 23 420-442 110-133 (447)
458 TIGR01081 mpl UDP-N-acetylmura 83.7 0.79 1.7E-05 48.6 2.8 23 420-442 104-127 (448)
459 TIGR00957 MRP_assoc_pro multi 83.7 0.37 8.1E-06 58.9 0.3 26 416-441 1313-1338(1522)
460 PRK14093 UDP-N-acetylmuramoyla 83.6 0.8 1.7E-05 49.1 2.8 24 419-442 109-133 (479)
461 PRK04690 murD UDP-N-acetylmura 83.6 0.82 1.8E-05 49.0 2.8 23 420-442 117-140 (468)
462 COG4988 CydD ABC-type transpor 83.6 0.41 8.9E-06 52.2 0.5 25 416-440 348-372 (559)
463 PRK00149 dnaA chromosomal repl 83.5 0.94 2E-05 48.2 3.3 26 417-442 150-175 (450)
464 PRK02705 murD UDP-N-acetylmura 83.5 0.83 1.8E-05 48.3 2.9 22 420-441 111-133 (459)
465 TIGR00991 3a0901s02IAP34 GTP-b 83.5 1.4 3E-05 45.0 4.3 22 415-436 38-59 (313)
466 PLN03130 ABC transporter C fam 83.4 0.37 8E-06 59.2 0.2 26 416-441 1266-1291(1622)
467 PRK01368 murD UDP-N-acetylmura 83.4 0.82 1.8E-05 48.8 2.8 22 420-441 106-128 (454)
468 TIGR01271 CFTR_protein cystic 83.4 0.46 1E-05 58.0 1.0 25 416-440 1246-1270(1490)
469 PRK03815 murD UDP-N-acetylmura 83.3 0.85 1.8E-05 48.0 2.8 23 420-442 91-114 (401)
470 PRK14948 DNA polymerase III su 83.2 1.5 3.2E-05 49.0 4.7 27 415-441 38-64 (620)
471 PRK10875 recD exonuclease V su 83.2 1.1 2.3E-05 50.0 3.6 26 416-441 168-193 (615)
472 PRK03369 murD UDP-N-acetylmura 83.1 0.87 1.9E-05 49.0 2.8 23 420-442 119-142 (488)
473 PRK09376 rho transcription ter 83.0 1.1 2.5E-05 47.2 3.6 27 416-442 170-196 (416)
474 PRK06620 hypothetical protein; 83.0 0.95 2.1E-05 43.4 2.8 23 416-438 45-67 (214)
475 TIGR03596 GTPase_YlqF ribosome 83.0 1 2.2E-05 44.8 3.1 23 414-436 117-139 (276)
476 TIGR01082 murC UDP-N-acetylmur 83.0 0.89 1.9E-05 48.2 2.8 23 420-442 101-124 (448)
477 PRK04308 murD UDP-N-acetylmura 82.9 0.91 2E-05 48.0 2.8 22 420-441 112-134 (445)
478 PRK11034 clpA ATP-dependent Cl 82.8 1.3 2.9E-05 50.4 4.3 27 415-441 207-233 (758)
479 COG4598 HisP ABC-type histidin 82.6 1.1 2.3E-05 42.9 2.8 23 416-438 33-55 (256)
480 COG1124 DppF ABC-type dipeptid 82.6 0.5 1.1E-05 46.6 0.7 32 411-444 31-62 (252)
481 COG1101 PhnK ABC-type uncharac 82.6 0.63 1.4E-05 45.4 1.3 25 416-440 33-57 (263)
482 PRK02006 murD UDP-N-acetylmura 82.5 0.94 2E-05 48.7 2.8 23 420-442 123-146 (498)
483 TIGR03744 traC_PFL_4706 conjug 82.5 1.2 2.5E-05 51.8 3.8 29 415-443 475-503 (893)
484 CHL00081 chlI Mg-protoporyphyr 82.5 1.8 3.9E-05 44.9 4.7 27 415-441 38-64 (350)
485 KOG0062 ATPase component of AB 82.5 0.58 1.2E-05 50.6 1.1 26 411-438 104-129 (582)
486 PRK11054 helD DNA helicase IV; 82.4 14 0.00031 41.7 12.2 27 417-443 211-237 (684)
487 COG3854 SpoIIIAA ncharacterize 82.4 1.1 2.3E-05 44.3 2.8 25 416-440 138-162 (308)
488 PRK14106 murD UDP-N-acetylmura 82.2 1 2.2E-05 47.5 2.9 25 418-442 108-133 (450)
489 cd01856 YlqF YlqF. Proteins o 82.1 1.3 2.8E-05 40.5 3.2 24 414-437 114-137 (171)
490 PRK09563 rbgA GTPase YlqF; Rev 82.1 1.1 2.5E-05 44.7 3.1 24 414-437 120-143 (287)
491 TIGR02012 tigrfam_recA protein 82.0 1.4 3.1E-05 45.2 3.7 27 416-442 56-82 (321)
492 PF02367 UPF0079: Uncharacteri 81.9 1.9 4.2E-05 38.1 4.1 25 416-440 16-40 (123)
493 KOG2355 Predicted ABC-type tra 81.9 0.81 1.7E-05 44.5 1.8 22 416-437 41-62 (291)
494 TIGR00929 VirB4_CagE type IV s 81.9 1.2 2.5E-05 50.5 3.4 28 415-442 434-461 (785)
495 TIGR02655 circ_KaiC circadian 81.8 1.3 2.9E-05 47.6 3.7 27 416-442 264-290 (484)
496 PRK10536 hypothetical protein; 81.8 1.4 3E-05 44.0 3.4 25 416-440 75-99 (262)
497 COG0714 MoxR-like ATPases [Gen 81.8 1.1 2.3E-05 45.7 2.7 25 416-440 44-68 (329)
498 PRK08972 fliI flagellum-specif 81.7 0.99 2.2E-05 48.2 2.6 24 415-438 162-185 (444)
499 cd01136 ATPase_flagellum-secre 81.7 1 2.2E-05 46.3 2.6 24 416-439 70-93 (326)
500 PRK14022 UDP-N-acetylmuramoyla 81.7 1.1 2.3E-05 48.1 2.9 24 418-441 110-134 (481)
No 1
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-76 Score=604.16 Aligned_cols=394 Identities=41% Similarity=0.655 Sum_probs=279.0
Q ss_pred CcceEEEeecCcEEEEeecccCCCCCCCcHHHHHHHhHhhcccCCCceeeccCCCceeeEEEEecccceEEEEEeccccc
Q 013364 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH 80 (444)
Q Consensus 1 MLD~f~IftkgGiVLWs~~~~~~~~~~~pin~LI~~vllEeR~~~~~~~~~~~~d~y~lkw~~~Ne~~LVFVvvYQ~iL~ 80 (444)
|||+|.||||||+|||.|+-.+..+.+ |||+||++||||||++..+|.+ +.|||+|+++|+++||||||||+|++
T Consensus 1 Mld~faIFtkgG~vLw~~~~~~~~~~~-~in~lI~~~ll~er~~~~~~~~----~~yTlk~q~~N~~~lvfvvvfqki~~ 75 (587)
T KOG0781|consen 1 MLDQFAIFTKGGLVLWCYQEVGDNLKG-PINALIRSVLLSERGGVNSFTF----EAYTLKYQLDNQYSLVFVVVFQKILT 75 (587)
T ss_pred CcceeeeecCCcEEEEEecccchhccc-hHHHHHHHHHHHhhcCcccCch----hheeEeeeecCCccEEEEEEEeccch
Confidence 999999999999999987766656666 9999999999999999999999 99999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCC--CCcchHHHHHHHHHHHHHHHHHH---hhhhhccccccccccccCcccCCCCCCC
Q 013364 81 LLYVDDLLAMMKQSFSEIYDPKRT--DYSDFDEMFRQLRKEAEARAEEL---KKSKQVTKPMNNLKKQGGQLQKGGFERG 155 (444)
Q Consensus 81 L~yvD~LL~~vk~~F~~~y~~~~~--~~~~Fd~~F~~~l~~~e~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (444)
|.|+|+||++++..|+..|.+... .+-+|.+.|..+|+......... .+.+..++.++++++....
T Consensus 76 L~yv~~ll~~v~~~f~e~~~~~~~~~l~~n~~~~~~e~lk~rq~~ne~t~~k~~~pi~~~~~~~~~K~~~~--------- 146 (587)
T KOG0781|consen 76 LTYVDKLLNDVLNLFREKYDTQSALSLLNNTFDFQEELLKLRQVANEATEYKIRAPITMKKSEDLEKAKDP--------- 146 (587)
T ss_pred hhhHHHHHHHHHHHHHHHhccchHHHhhhhhHHHHHHHHHHhhcccccchhhhcccchhhhhhcchhhhhh---------
Confidence 999999999999999999987432 34466666666666554322111 1111122223333322211
Q ss_pred CCCCCCCCCCCCCCCCc-ccCcccCCCCCCCCcccccccccccccCCCCCCCCccchhhhHHHHHhhhcCCCCcccccCC
Q 013364 156 SNRSGGGSANDDGDSDN-MRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNKGGKKTDTVVSK 234 (444)
Q Consensus 156 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~k~~~~~~~~~~~ 234 (444)
.....+.++.... ....++.++..+.+ +. ..++++-+..+++. +..
T Consensus 147 ----v~~~~e~~~d~s~kk~~nt~kng~~~~~---------------------h~-----~~~kk~~~~tkkKg---~~s 193 (587)
T KOG0781|consen 147 ----VRSPIETNGDKSAKKKKNTKKNGAKKEG---------------------HD-----EEFKKKHRETKKKG---NKS 193 (587)
T ss_pred ----hccccccccccchhcccccccCCCcccc---------------------hh-----hhhhhhhccccccc---ccC
Confidence 0011111111100 00000111111110 01 11122211111111 112
Q ss_pred CCCCCCCccccccCccCCCCC--CCCCcccCCCCCCCCCch-hhhhhhcCCCccccccccC---CCCcchhhhhhccCCC
Q 013364 235 GSNPDPKKKITKKNRVWDDSP--PESKLDFTDPAGGNGSNI-EVEAADHGESMMDKEEVFS---SDSESEEDEEVGKHNK 308 (444)
Q Consensus 235 ~~~~~~~~k~~K~~R~Wd~~~--~~~~LD~S~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---s~~e~~~~~~~~~~~~ 308 (444)
++.+.|++|.+|++|+||+.+ +...||||++..+++.+. +.+...++.++.+-.+..+ ++++++++.+ ..+..
T Consensus 194 ~~~~~p~kKGkk~~RvWdd~g~~d~~~ld~sss~sn~e~a~~e~vn~~~~~s~~~~~~~l~~~~~d~~~s~~~~-~~~~~ 272 (587)
T KOG0781|consen 194 TKVDAPKKKGKKAPRVWDDAGCEDEKVLDYSSSTSNGENALSETVNLDQGESMGGQLQDLDKDSSDDEGSADNS-TDPAA 272 (587)
T ss_pred CCCCCchhhcccccchhhhccchhhcccccCCccccccchhHHHhhhhhhcccccccccccccccccccccccc-cchhh
Confidence 233455566667799999865 778999999885554332 2333334444433211111 1111111111 11223
Q ss_pred CCccccchHHHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHH
Q 013364 309 PDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEE 388 (444)
Q Consensus 309 ~~~~~~~~~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~ 388 (444)
..++.++||+ ||++|+|++.|.++||.|+|++|++|||.+|||.++|++||++|..+|+|+++++|+++..+|+++|++
T Consensus 273 ~~k~~g~aFg-~fkglvG~K~L~eeDL~pvL~kM~ehLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~d 351 (587)
T KOG0781|consen 273 TKKTVGGAFG-LFKGLVGSKSLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRD 351 (587)
T ss_pred hhcchhhHHH-HHHhhcccccccHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHH
Confidence 4455677886 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 389 ALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 389 ~L~~iL~p~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
+|++||+|.+++|+||+|..++.+++||||+||||||||||||||||||||++|.
T Consensus 352 aLvQILTP~~sVDlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNk 406 (587)
T KOG0781|consen 352 ALVQILTPQRSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNK 406 (587)
T ss_pred HHHHHcCCCchhhHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999984
No 2
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=100.00 E-value=9.7e-42 Score=337.60 Aligned_cols=116 Identities=53% Similarity=0.831 Sum_probs=71.0
Q ss_pred CCcHHHHHHHhHhhcccCCCceeeccCCCceeeEEEEecccceEEEEEeccccchhhHHHHHHHHHHHHHHhcCCCCC--
Q 013364 27 GSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRT-- 104 (444)
Q Consensus 27 ~~pin~LI~~vllEeR~~~~~~~~~~~~d~y~lkw~~~Ne~~LVFVvvYQ~iL~L~yvD~LL~~vk~~F~~~y~~~~~-- 104 (444)
++|||+||++||||||+++.+|+| |+|+|||+|+|||+||||||||+||||+|||+||++|+++|+++|++.+.
T Consensus 1 ~~~in~LI~~vlleeR~~~~~~~~----d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~l~~~ 76 (279)
T PF04086_consen 1 TSPINALIRDVLLEERSGNSSFTY----DNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQLKQL 76 (279)
T ss_dssp --HHHHHHHHTGGG-----------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHHHHSS
T ss_pred CchHHHHHHHhheeeccCCCceeE----cCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHHhhcc
Confidence 489999999999999999999999 99999999999999999999999999999999999999999999987531
Q ss_pred -------CCcchHHHHHHHHHHHHHHHHHHhhhhhccccccccccccCc
Q 013364 105 -------DYSDFDEMFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGGQ 146 (444)
Q Consensus 105 -------~~~~Fd~~F~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (444)
.|++|+++|+++|+++|+++...++....|++|+++.+++.+
T Consensus 77 ~~~~~~~~~~~Fd~~F~~~l~~~e~~~~~~~~~~~~~~~~~~s~k~~~t 125 (279)
T PF04086_consen 77 KPNTSINEYFDFDEEFDQLLKELEARSKSQKRSPKAMRSFEESKKSKKT 125 (279)
T ss_dssp STHHHHT-----HHHHHHHHHHHCCCTT---------------------
T ss_pred ccccccccchhHHHHHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 467999999999999999887655656678899888776554
No 3
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.83 E-value=4.1e-20 Score=184.86 Aligned_cols=108 Identities=32% Similarity=0.523 Sum_probs=88.2
Q ss_pred cCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-hcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhHH
Q 013364 329 NLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAAS-LEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVH 407 (444)
Q Consensus 329 ~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~-l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i~ 407 (444)
.+.+.+.++++++|+++||.+||+.++++.||+.++.. ...++..+ ...++++|.+.|.++|.|....+....+
T Consensus 59 ~~~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~~~~----~~~v~~~l~~~l~~il~~~~~~~~~~~~- 133 (340)
T COG0552 59 KIKEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKKKKIKD----EETVKEALREALIEILRPVDKVDLPLEI- 133 (340)
T ss_pred ccccchhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhcccccCCC----HHHHHHHHHHHHHHHhcccccccchhhh-
Confidence 34555677899999999999999999999999999995 33333332 6789999999999999986664433222
Q ss_pred HhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 408 AAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 408 ~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
...++|+||+|||||||||||||||||+||+++.
T Consensus 134 --~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g 167 (340)
T COG0552 134 --PKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQG 167 (340)
T ss_pred --ccCCCcEEEEEEecCCCchHhHHHHHHHHHHHCC
Confidence 2456899999999999999999999999999763
No 4
>PRK14974 cell division protein FtsY; Provisional
Probab=99.75 E-value=8.9e-18 Score=170.79 Aligned_cols=123 Identities=35% Similarity=0.581 Sum_probs=103.6
Q ss_pred cccchHHHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHH
Q 013364 312 KKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALV 391 (444)
Q Consensus 312 ~~~~~~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~ 391 (444)
...|||.++... .|+++++++++++|+..|+++||+.++|++|++.++..+.|.+...+......++.+|++.|.
T Consensus 45 ~~~~~~~~~~~~-----~~~~~~~~~~l~~l~~~Ll~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 119 (336)
T PRK14974 45 EKPGFFDKAKIT-----EIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALL 119 (336)
T ss_pred cccCHHHHHHhc-----ccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHH
Confidence 356888866533 399999999999999999999999999999999999999998887777777889999999999
Q ss_pred HHcCCCCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 392 RILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 392 ~iL~p~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
++|.+...++++..+ ...++|++|+|+|+||||||||++|||+||.++
T Consensus 120 ~~l~~~~~~~~~~~~---~~~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 120 EVLSVGDLFDLIEEI---KSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred HHhCCCcchhhhhhh---hccCCCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 999865433332222 234579999999999999999999999999865
No 5
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.73 E-value=2.9e-17 Score=168.98 Aligned_cols=120 Identities=18% Similarity=0.374 Sum_probs=107.5
Q ss_pred cchHHHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHH
Q 013364 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI 393 (444)
Q Consensus 314 ~~~~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~i 393 (444)
+..|++.++.|.|...|+++++++++.+++.+|+++||+..++..++++|+++..|..+...-+..+.|..+++++|+.+
T Consensus 6 ~~~l~~~l~kl~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~eELv~l 85 (451)
T COG0541 6 SDRLSNALKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYEELVKL 85 (451)
T ss_pred HHHHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34577789999999999999999999999999999999999999999999999999888776778889999999999999
Q ss_pred cCC-CCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 394 LTP-RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 394 L~p-~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
|++ ...+++ ....|.||+|||..|+|||||+||||+||++
T Consensus 86 lG~~~~~~~l--------~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk 126 (451)
T COG0541 86 LGGENSELNL--------AKKPPTVILMVGLQGSGKTTTAGKLAKYLKK 126 (451)
T ss_pred hCCCCccccc--------CCCCCeEEEEEeccCCChHhHHHHHHHHHHH
Confidence 996 333331 3567999999999999999999999999998
No 6
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.73 E-value=2.4e-17 Score=172.03 Aligned_cols=121 Identities=21% Similarity=0.340 Sum_probs=105.2
Q ss_pred chHHHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHc
Q 013364 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (444)
Q Consensus 315 ~~~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL 394 (444)
..|.+.|++|.|...||++++++++.+++..|+++||+..++..|+++|+..+.|.++.........|...+.+.|+++|
T Consensus 7 ~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~~~l 86 (429)
T TIGR01425 7 SSITSALRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCNLV 86 (429)
T ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHh
Confidence 45677999999999999999999999999999999999999999999999998888776665666789999999999999
Q ss_pred CCCCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 395 ~p~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.+.... + ....++|++|+|||++|||||||++|||+||.++
T Consensus 87 ~~~~~~-----~--~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 87 DPGVEA-----F--TPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCCCcc-----c--cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 875431 1 1234679999999999999999999999999754
No 7
>PRK10867 signal recognition particle protein; Provisional
Probab=99.70 E-value=9.8e-17 Score=168.02 Aligned_cols=122 Identities=23% Similarity=0.370 Sum_probs=103.7
Q ss_pred chHHHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHc
Q 013364 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (444)
Q Consensus 315 ~~~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL 394 (444)
..|++.|+.+.|...|+++++++++.+++..|+++||+.+++.+|++.|+..+.+.+.....+..+.+..++.++|.++|
T Consensus 7 ~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~~l 86 (433)
T PRK10867 7 DRLSSAFKKLRGKGRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVEIL 86 (433)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHh
Confidence 34667899999999999999999999999999999999999999999999998877665444456778999999999999
Q ss_pred CCCC-cchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhcC
Q 013364 395 TPRR-SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDFG 444 (444)
Q Consensus 395 ~p~~-~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~g 444 (444)
.+.. +++ ...++|++|+|||++|||||||++|||+||.+++|
T Consensus 87 ~~~~~~~~--------~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G 129 (433)
T PRK10867 87 GGENSELN--------LAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKK 129 (433)
T ss_pred CCCcceee--------ecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcC
Confidence 7632 222 13456999999999999999999999999987633
No 8
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.68 E-value=3.1e-16 Score=164.11 Aligned_cols=121 Identities=18% Similarity=0.379 Sum_probs=103.2
Q ss_pred cchHHHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHH
Q 013364 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI 393 (444)
Q Consensus 314 ~~~~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~i 393 (444)
+..|++.|+.|.|...||++++++++.+++.+|+++||+.+++.+|++.|+..+.+.+..........+...+.++|.++
T Consensus 5 ~~~~~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~~ 84 (428)
T TIGR00959 5 SERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVAI 84 (428)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHH
Confidence 34567799999999999999999999999999999999999999999999999888766544445677889999999999
Q ss_pred cCCCCc-chhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 394 LTPRRS-IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 394 L~p~~~-~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
|.+... ++ ...++|++|+|||++|||||||++|||++|..+
T Consensus 85 l~~~~~~~~--------~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~ 126 (428)
T TIGR00959 85 LGGENASLN--------LAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKK 126 (428)
T ss_pred hCCCCcccc--------cCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 986532 21 134579999999999999999999999998743
No 9
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.67 E-value=4.4e-16 Score=163.38 Aligned_cols=119 Identities=20% Similarity=0.284 Sum_probs=101.7
Q ss_pred hHHHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcC
Q 013364 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILT 395 (444)
Q Consensus 316 ~~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~ 395 (444)
.|++.|++|.|.+.||++++++++.+++.+|+++||+.+++++|++.|+..+.+.+..........+...+.++|.++|+
T Consensus 4 ~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~l~ 83 (437)
T PRK00771 4 SLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVKLLG 83 (437)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHHHhC
Confidence 35678889999999999999999999999999999999999999999999988876654445567788999999999998
Q ss_pred CCCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 396 p~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
+..... . ...+|++|+|||++|||||||++|||++|.++
T Consensus 84 ~~~~~~-----~---~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 84 EETEPL-----V---LPLKPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCcccc-----c---cCCCCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 654321 0 12569999999999999999999999999864
No 10
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=7.8e-16 Score=155.78 Aligned_cols=121 Identities=27% Similarity=0.432 Sum_probs=106.8
Q ss_pred chHHHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHc
Q 013364 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (444)
Q Consensus 315 ~~~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL 394 (444)
+.+.+.|+.+.....+++..|..+|.+|..+|+++||+..++.+|.++|+..+...++...-.....|..++.++|++++
T Consensus 8 rrI~~a~~~~s~~t~~~~~~l~~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~eL~kl~ 87 (483)
T KOG0780|consen 8 RRITSAFSRMSNATSIDETALNTMLKEICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVFDELVKLL 87 (483)
T ss_pred hhHHHHHHHhccCCcchHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhchhhhccccCHHHHHHHHHHHHHHHHh
Confidence 45666777888888899999999999999999999999999999999999999888887666677789999999999999
Q ss_pred CCCCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 395 ~p~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.|..+. .....++|.||+|||++|+||||||+|||+||+++
T Consensus 88 dp~~~~-------~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkk 128 (483)
T KOG0780|consen 88 DPGKSA-------LQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKK 128 (483)
T ss_pred CCCCcc-------cccccCCCcEEEEEeccCCCcceeHHHHHHHHHhc
Confidence 996552 22457889999999999999999999999999875
No 11
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.59 E-value=6.6e-15 Score=149.02 Aligned_cols=108 Identities=28% Similarity=0.480 Sum_probs=86.6
Q ss_pred HHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCc
Q 013364 320 MFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRS 399 (444)
Q Consensus 320 ~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~ 399 (444)
-+..+.+++.++++ .+++|+++|+++||++++|..||+.++..+.+....+ ...++..+.+.|.++|.+...
T Consensus 34 ~~~~l~~~~~~~~~----~~~~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~l~~~~~ 105 (318)
T PRK10416 34 GINGLFAKKKIDED----LLEELEELLIEADVGVETTEEIIEELRERVKRKNLKD----PEELKELLKEELAEILEPVEK 105 (318)
T ss_pred HHHHHhCCCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHHHhCcCCc
Confidence 44555567788886 5789999999999999999999999999887655433 456888999999999975322
Q ss_pred -chhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 400 -IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 400 -~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
+. ...++|.+|+||||||||||||++|||++|....
T Consensus 106 ~~~--------~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 106 PLN--------IEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred ccc--------ccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 21 1235689999999999999999999999998653
No 12
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.46 E-value=3.8e-13 Score=133.43 Aligned_cols=97 Identities=33% Similarity=0.503 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhHHHhhhcCC
Q 013364 335 LEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRK 414 (444)
Q Consensus 335 l~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~~ 414 (444)
+++++++|+..|+++||+++++++|++.++..+.+.+... ...+...+.+.|.+++.+.... .....++
T Consensus 3 ~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~e~l~~~~~~~~~~-------~~~~~~~ 71 (272)
T TIGR00064 3 DEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKD----AELLKEILKEYLKEILKETDLE-------LIVEENK 71 (272)
T ss_pred cHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCC----HHHHHHHHHHHHHHHHcccchh-------hcccCCC
Confidence 4678999999999999999999999999999887766654 3456778888888888653110 1112456
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
|++|+|||++|||||||++|||.+|.++
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999765
No 13
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.34 E-value=5.3e-12 Score=130.94 Aligned_cols=94 Identities=23% Similarity=0.334 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhHHHhhhcCCC
Q 013364 336 EPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKP 415 (444)
Q Consensus 336 ~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~~p 415 (444)
++.++.+++.|++.||+++++.+|++.+...+....... ...+++.+.+.|.+.+....+. ....+|
T Consensus 108 ~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~----~~~v~~~l~~~l~~~i~~~~~~---------~~~~~~ 174 (388)
T PRK12723 108 HPTILKIEDILRENDFSESYIKDINEFIKKEFSLSDLDD----YDKVRDSVIIYIAKTIKCSGSI---------IDNLKK 174 (388)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhcCC----HHHHHHHHHHHHHHHhhccCcc---------ccCCCC
Confidence 356899999999999999999999999988765443332 3456777777777777432221 113468
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.+|+||||||||||||+||||++|..+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~ 201 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGIN 201 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999864
No 14
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.34 E-value=5.9e-12 Score=133.55 Aligned_cols=109 Identities=21% Similarity=0.281 Sum_probs=75.3
Q ss_pred cchHHHHHHHccC-CccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHH
Q 013364 314 TGWFSSMFQSIAG-KANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVR 392 (444)
Q Consensus 314 ~~~~~~~~~~l~g-~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~ 392 (444)
.++|...+..+.. ...+ .+|++.+|++.|++.||+.+++.+|++.+...... ..++..+.+.|.+
T Consensus 176 r~~l~~~~~~l~~~~~~~----~~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~~~----------~~~~~~l~~~l~~ 241 (484)
T PRK06995 176 RGMLEEQLASLAWGERQR----RDPVRAALLKHLLAAGFSAQLVRMLVDNLPEGDDA----------EAALDWVQSALAK 241 (484)
T ss_pred HHHHHHHHHHHhcccccc----ccHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhch----------hHHHHHHHHHHHH
Confidence 3445555555542 2222 25788999999999999999999999999765321 2345566666666
Q ss_pred HcCCCCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhcC
Q 013364 393 ILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDFG 444 (444)
Q Consensus 393 iL~p~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~g 444 (444)
.|......+. .-.+++||+||||||||||||++|||.+|...+|
T Consensus 242 ~l~~~~~~~~--------~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G 285 (484)
T PRK06995 242 NLPVLDSEDA--------LLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHG 285 (484)
T ss_pred HHhhccCccc--------cccCCcEEEEECCCCccHHHHHHHHHHHHHHhcC
Confidence 6643222211 0124689999999999999999999999976543
No 15
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.29 E-value=1.9e-11 Score=127.40 Aligned_cols=105 Identities=18% Similarity=0.312 Sum_probs=81.7
Q ss_pred CccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhH
Q 013364 327 KANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDV 406 (444)
Q Consensus 327 ~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i 406 (444)
.++|+++++.+.++.|++.|++.||+.++|.+|++.+...+.+.....+ ..+...+.+.|.+.+.+... .+
T Consensus 145 ~~~i~~~~~~~~~~~L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~~~----~~~~~~l~~~L~~~l~~~~~--~~--- 215 (432)
T PRK12724 145 ETTIVRKEKDSPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQGRN----HNVTERAVTYLEERVSVDSD--LF--- 215 (432)
T ss_pred cccccHhhhhhHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhccccccch----HHHHHHHHHHHHHhcccchh--hh---
Confidence 6689999999999999999999999999999999999988766554432 34667777778888754221 11
Q ss_pred HHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 407 HAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 407 ~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
......++.+|+|+||+|||||||++|||.++..
T Consensus 216 -~~~g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~ 249 (432)
T PRK12724 216 -SGTGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFL 249 (432)
T ss_pred -hhcccCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 1111235789999999999999999999986643
No 16
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.25 E-value=3.7e-11 Score=119.79 Aligned_cols=91 Identities=27% Similarity=0.385 Sum_probs=71.1
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCC-cchhhHhHHHhhhc
Q 013364 334 DLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRR-SIDILRDVHAAKEQ 412 (444)
Q Consensus 334 dl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~-~~d~l~~i~~~~~~ 412 (444)
.+.+.+..+++.|+..||..+++.+|++.+... .. ...++..+.+.|.++|.... ..+ -.
T Consensus 131 ~~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~~------~~----~~~~~~~~~~~l~~~l~~~~~~~~---------~~ 191 (282)
T TIGR03499 131 QRDPEGAKLLERLLRAGVSPELARELLEKLPER------AD----AEDAWRWLREALEKMLPVKPEEDE---------IL 191 (282)
T ss_pred ccCHHHHHHHHHHHHCCCCHHHHHHHHHHhhcc------CC----HHHHHHHHHHHHHHHhccCCcccc---------cc
Confidence 455778999999999999999999999998742 11 24567788888888886221 111 02
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
.+|.+|+||||||||||||++|||.+|..++
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~ 222 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEH 222 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHc
Confidence 3578999999999999999999999998763
No 17
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.19 E-value=6.8e-11 Score=130.89 Aligned_cols=90 Identities=23% Similarity=0.255 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhHHHhhhcCCC
Q 013364 336 EPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKP 415 (444)
Q Consensus 336 ~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~~p 415 (444)
+|+.+.+++.|++.||+.+++.+|++.+.... + ...+...+.+.|.+++......+. . -.++
T Consensus 124 ~~~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~------~----~~~~~~~l~~~L~~~l~il~~~~~------~--~~~g 185 (767)
T PRK14723 124 DPLRASLFRWLLGAGFSGQLARALLERLPVGY------D----RPAAMAWIRNELATHLPVLRDEDA------L--LAQG 185 (767)
T ss_pred hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC------C----HHHHHHHHHHHHHHHhhhccCCCc------c--cCCC
Confidence 46778899999999999999999999986531 1 234677788888887743222211 0 1135
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
.||+||||||||||||++|||.+|...+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~ 213 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVARE 213 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHc
Confidence 7999999999999999999999986544
No 18
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.16 E-value=1.7e-10 Score=121.33 Aligned_cols=92 Identities=29% Similarity=0.372 Sum_probs=72.7
Q ss_pred ChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhHHHhh
Q 013364 331 DKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAK 410 (444)
Q Consensus 331 ~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i~~~~ 410 (444)
....+++.+..+++.|+..||..+++.+|++.+......... .++..+.+.|.++|..... ++ .
T Consensus 155 ~~~~~~~~~~~~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~L~~~l~~~~~-~~-------~ 218 (424)
T PRK05703 155 QVERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRER--------TAWRYLLELLANMIPVRVE-DI-------L 218 (424)
T ss_pred ccccchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHhCcccc-cc-------c
Confidence 345677899999999999999999999999999876532210 3678888889998865332 11 1
Q ss_pred hcCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 411 EQRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 411 ~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
. .+.+|+||||||||||||++|||++|.
T Consensus 219 ~--~~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 219 K--QGGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred c--CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1 246999999999999999999999987
No 19
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.12 E-value=3.1e-10 Score=117.38 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhHHHhhhcCCC
Q 013364 336 EPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKP 415 (444)
Q Consensus 336 ~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~~p 415 (444)
...+..+...|++.+|..+++.+|++.+...+......+ ...+...+.+.|..++..... ...+|
T Consensus 177 ~~~~~~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~l~~~~~-----------~~~~~ 241 (436)
T PRK11889 177 PFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMIT----EEEVIEYILEDMRSHFNTENV-----------FEKEV 241 (436)
T ss_pred chHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhcccccCC----HHHHHHHHHHHHHHHhccccc-----------cccCC
Confidence 345667889999999999999999999986544332222 245667777777777754211 12357
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
++|+||||||||||||++|||.+|..+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 899999999999999999999998743
No 20
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.98 E-value=1.9e-09 Score=112.91 Aligned_cols=88 Identities=20% Similarity=0.233 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhHHHhhhcCCC
Q 013364 336 EPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKP 415 (444)
Q Consensus 336 ~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~~p 415 (444)
.|....+...|+..||+.+++.+|++.+....... .....++..|.+.|..+ ... .+ -..+
T Consensus 131 ~p~~~~~~~~L~~~~v~~~la~~l~~~~~~~~~~~------~~~~~~~~~l~~~l~~~-~~~-~~-----------~~~g 191 (420)
T PRK14721 131 DPGGMKVLRTLLSAGFSPLLSRHLLEKLPADRDFE------QSLKKTISLLTLNLRTI-GGD-EI-----------IEQG 191 (420)
T ss_pred CcHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHhc-CCc-cc-----------cCCC
Confidence 35567888999999999999999999987654211 11233444444444322 111 11 1235
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.+|+||||||||||||++|||.++...
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~ 218 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIR 218 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 799999999999999999999987544
No 21
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.90 E-value=5.5e-09 Score=107.96 Aligned_cols=93 Identities=20% Similarity=0.272 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhHHHhhhcCCCe
Q 013364 337 PALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPY 416 (444)
Q Consensus 337 ~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~~p~ 416 (444)
|.-..+...|+..+|...++.+|++.+..... ..+ .......+...|...+......+. .-.+..
T Consensus 74 p~~~~l~~~L~~~g~~~~l~~~l~~~~~~~~~---~~~----~~~~~~~~~~~l~~~l~~~~~~~~--------~~~~g~ 138 (374)
T PRK14722 74 PVHGALTKYLFAAGFSAQLVRMIVDNLPEGEG---YDT----LDAAADWAQSVLAANLPVLDSEDA--------LMERGG 138 (374)
T ss_pred cHHHHHHHHHHHCCCCHHHHHHHHHhhhhhcc---cCC----HHHHHHHHHHHHHhcchhhcCCCc--------cccCCc
Confidence 56688889999999999999999998865321 111 123344444444444432111110 012347
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHHHhcC
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIILIDFG 444 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~~~~g 444 (444)
+|+||||||||||||++|||.++..++|
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~~~G 166 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRFG 166 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999876543
No 22
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.87 E-value=6.9e-09 Score=107.14 Aligned_cols=88 Identities=17% Similarity=0.228 Sum_probs=68.4
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhHHHhhhcCCCeEEEE
Q 013364 341 ALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVF 420 (444)
Q Consensus 341 ~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~~p~vI~f 420 (444)
++++.|.+.+|..+++..|++.+...+......+ ...+...+.+.|.+++....+.. -.++.+|+|
T Consensus 146 ~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~~~----~~~v~~~~~~~L~~~l~~~~~~~----------~~~~~ii~l 211 (407)
T PRK12726 146 DFVKFLKGRGISDTYVADFMQAGRKQFKQVETAH----LDDITDWFVPYLSGKLAVEDSFD----------LSNHRIISL 211 (407)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc----HHHHHHHHHHHhcCcEeeCCCce----------ecCCeEEEE
Confidence 7899999999999999999999987755433232 24577777777887775433321 124689999
Q ss_pred EeeCCCChhhHHHHHHHHHHHh
Q 013364 421 VGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 421 VGvNGVGKTTTlAKLA~~l~~~ 442 (444)
|||+|||||||++|||+++..+
T Consensus 212 vGptGvGKTTt~akLA~~l~~~ 233 (407)
T PRK12726 212 IGQTGVGKTTTLVKLGWQLLKQ 233 (407)
T ss_pred ECCCCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999998654
No 23
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.82 E-value=1.6e-08 Score=106.65 Aligned_cols=95 Identities=22% Similarity=0.382 Sum_probs=69.8
Q ss_pred HHH--HHHHHHhCCCcHHHHHHHHHHHHHHhc--ccccccccchhHHHHHHHHHHHHHHcCCCC--cchhhHhHHHhhhc
Q 013364 339 LKA--LKDRLMTKNVAEEIAEKLCESVAASLE--GKKLASFTRISSIVQAAMEEALVRILTPRR--SIDILRDVHAAKEQ 412 (444)
Q Consensus 339 l~~--l~~~Li~kdVa~~ia~~l~~~v~~~l~--g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~--~~d~l~~i~~~~~~ 412 (444)
+.+ |...|+..||++++|.+|++.++..+. |.+... ...|+..+.+.|.+.+.+.. ..++.+.+ ...
T Consensus 180 FSkGiLaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg~~~~~----ra~VR~~V~~~L~~~l~~~~a~~y~la~~i---~~~ 252 (475)
T PRK12337 180 FSKGILAQSLMAAGLAPDVARRLARETERDLRRSGDRVVR----RDQLRRKVEALLLEEAGEEVARRYRLLRSI---RRP 252 (475)
T ss_pred CchhHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccccccc----HHHHHHHHHHHHHhhhhhhHHHHHHHHHHh---hcc
Confidence 445 778999999999999999999999884 444333 45677777777777775321 11111111 123
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+|++|+|+|+|||||||++++||.+|-
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg 280 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLG 280 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999999999873
No 24
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.61 E-value=1.2e-07 Score=98.08 Aligned_cols=26 Identities=42% Similarity=0.612 Sum_probs=24.8
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+.||+|||||||||||||||||+.|.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57999999999999999999999987
No 25
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.55 E-value=2.9e-07 Score=98.72 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhHHHhhhcCCC
Q 013364 336 EPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKP 415 (444)
Q Consensus 336 ~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~~p 415 (444)
+|+-..+.+.|+..+|..+++..|++.+..... ....+..+.+.|.+.|. ....+.+ . +.
T Consensus 291 ~P~~~~l~~~L~~~Gvs~~la~~L~~~l~~~~~----------~~~~~~~l~~~L~~~l~-v~~~~~l-------~--~G 350 (559)
T PRK12727 291 SPVRAQALELMDDYGFDAGLTRDVAMQIPADTE----------LHRGRGLMLGLLSKRLP-VAPVDPL-------E--RG 350 (559)
T ss_pred ChHHHHHHHHHHHCCCCHHHHHHHHHhhhcccc----------hhhHHHHHHHHHHHhcC-cCccccc-------c--CC
Confidence 477778889999999999999999998865421 12234556666777763 2222211 1 24
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
.+|+|||++||||||+++|||.+|..++
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~ 378 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQH 378 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 7999999999999999999999987654
No 26
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.42 E-value=7.2e-07 Score=89.74 Aligned_cols=86 Identities=21% Similarity=0.284 Sum_probs=57.4
Q ss_pred HhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhHHHhhhcCCCeEEEEEeeCCC
Q 013364 347 MTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGV 426 (444)
Q Consensus 347 i~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~~p~vI~fVGvNGV 426 (444)
+..++|.++|.+|++.++.. |.+..+.+.+.+.|..+|.+.....+.+. .++++.+. ...+|.+|++.|++|+
T Consensus 31 ~~~~~A~~iA~~i~~~L~~~--g~~~i~~~el~~~V~~~L~~~~~~~~~~~--y~~~~~i~---~~~~p~iIlI~G~sgs 103 (301)
T PRK04220 31 MKPSIAYEIASEIEEELKKE--GIKEITKEELRRRVYYKLIEKDYEEVAEK--YLLWRRIR---KSKEPIIILIGGASGV 103 (301)
T ss_pred CChhHHHHHHHHHHHHHHHc--CCEEeeHHHHHHHHHHHHHHhCcHhHHHH--HHHHHHHh---cCCCCEEEEEECCCCC
Confidence 34455555666666665554 55555555556666666666665555432 44444432 3357999999999999
Q ss_pred ChhhHHHHHHHHH
Q 013364 427 GKSTNLAKVKLII 439 (444)
Q Consensus 427 GKTTTlAKLA~~l 439 (444)
||||.+.+||++|
T Consensus 104 GKStlA~~La~~l 116 (301)
T PRK04220 104 GTSTIAFELASRL 116 (301)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999988
No 27
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=98.40 E-value=1.9e-06 Score=68.81 Aligned_cols=71 Identities=31% Similarity=0.440 Sum_probs=56.9
Q ss_pred HHHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHH
Q 013364 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEAL 390 (444)
Q Consensus 317 ~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L 390 (444)
|++.++.|.+...++++++++++++|+++||++||+.++|.+||+.|+....+.. .......|+.+|+++|
T Consensus 5 l~kt~~~l~~~~~~~~~~i~~~l~ele~~Li~aDVg~~~a~~i~~~ik~~~~~~~---~~~~~~~v~~~l~~~L 75 (75)
T PF02881_consen 5 LSKTFKKLSGSIFLTEKDIEEFLEELEEALIEADVGVEVAEKIIENIKKKLIKKK---GINPREEVKKALKEEL 75 (75)
T ss_dssp HHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHCTT---SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccHHhHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhccc---CCCcHHHHHHHHHHHC
Confidence 4567888888877899999999999999999999999999999999999444321 1234567777777764
No 28
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.19 E-value=2.3e-06 Score=85.14 Aligned_cols=94 Identities=17% Similarity=0.256 Sum_probs=61.9
Q ss_pred hhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhHHHhhh
Q 013364 332 KADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKE 411 (444)
Q Consensus 332 ~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~ 411 (444)
.+++++.+.+++..|++.||..+++.+|.+.....+.... + ....+...+.+.+...+.+...+
T Consensus 8 ~~~~~~~~~~~~~~l~~~dv~~~~~~~l~~~~~i~f~~~~---~--~~~~vl~~v~~~l~~~~~~~~~~----------- 71 (270)
T PRK06731 8 QESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENAT---M--ITEEVIEYILEDMSSHFNTENVF----------- 71 (270)
T ss_pred hhcccHHHHHHHHHHHHcCCCHHHHHHHhhcceEEecCCC---c--cccHHHHHHhcccEEeeCCcccc-----------
Confidence 3566778899999999999999999999986643332211 1 11222222222233223221110
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+++.+|+|||+||+||||++.+||.++..
T Consensus 72 ~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~ 101 (270)
T PRK06731 72 EKEVQTIALIGPTGVGKTTTLAKMAWQFHG 101 (270)
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 124579999999999999999999999864
No 29
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=97.54 E-value=0.00015 Score=64.43 Aligned_cols=77 Identities=22% Similarity=0.434 Sum_probs=44.7
Q ss_pred CcceEEEeecCcEEEEeecccCCCCCCCcHHHHHHHhHhhcc-----cCCCce-ee---ccCCCceeeEEEEecccceEE
Q 013364 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEER-----SGLASF-NY---DSAGAAYTLKWTFHNELGLVF 71 (444)
Q Consensus 1 MLD~f~IftkgGiVLWs~~~~~~~~~~~pin~LI~~vllEeR-----~~~~~~-~~---~~~~d~y~lkw~~~Ne~~LVF 71 (444)
|+|+|+|||..|-||+.+.-.+-.....-||++|...+-.-- ++...| .. ....++++..+......+|.|
T Consensus 1 MfdQlaIFTpqGqvLyqyN~~gKKFsE~QiN~FIs~lItsP~~~~e~~~~~k~~~i~s~~~~~~~f~~mfh~sKQPeLy~ 80 (148)
T PF09201_consen 1 MFDQLAIFTPQGQVLYQYNCLGKKFSETQINAFISHLITSPVTKKEDSSKSKFLTISSEKKNSRSFSAMFHISKQPELYY 80 (148)
T ss_dssp ---EEEEE-TT-BEEEEEETTS----HHHHHHHHHHHHHS---GGGTT--EEEEE-----------EEEEEEETTTTEEE
T ss_pred CcceeEEeccCceEEEEecccchHHHHHHHHHHHHHHhcCCCcccCCCcceeeEEecccccCCCChheeeeecCCCcEEE
Confidence 999999999999999975544445566779999988774322 111111 11 012268999999999999999
Q ss_pred EEEecc
Q 013364 72 VAVYQR 77 (444)
Q Consensus 72 VvvYQ~ 77 (444)
||-|-.
T Consensus 81 VvTyae 86 (148)
T PF09201_consen 81 VVTYAE 86 (148)
T ss_dssp EEEESS
T ss_pred EEEecc
Confidence 999976
No 30
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.14 E-value=0.0017 Score=63.86 Aligned_cols=90 Identities=17% Similarity=0.314 Sum_probs=58.0
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCc--chhhHhHHHhhhcCCCeEEEEE
Q 013364 344 DRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRS--IDILRDVHAAKEQRKPYVVVFV 421 (444)
Q Consensus 344 ~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~--~d~l~~i~~~~~~~~p~vI~fV 421 (444)
.-|...+|.+++|-.|.-.++..|.++...-. ..+.+.+ +...|.+--.|... --+.|-| +...+|.+|++=
T Consensus 22 rSlta~g~~p~~Ay~iA~~i~e~L~~~~~~~v--~~~eir~-~~~~l~~k~~~e~a~rY~lwR~i---r~~~~p~IILIG 95 (299)
T COG2074 22 RSLTAAGVDPDLAYSIAIEIQEELKKEGIRLV--TKDEIRE-VYQKLLEKGDPEVAKRYLLWRRI---RKMKRPLIILIG 95 (299)
T ss_pred HHHHhcccChhHHHHHHHHHHHHHHhCCCeEe--eHHHHHH-HHHHHHHhcCHHHHHHHHHHHHH---hccCCCeEEEec
Confidence 35788888899888888888888876554321 1334444 33333333223211 0112222 234569999999
Q ss_pred eeCCCChhhHHHHHHHHH
Q 013364 422 GVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 422 GvNGVGKTTTlAKLA~~l 439 (444)
|+.||||||-.+=||+.|
T Consensus 96 GasGVGkStIA~ElA~rL 113 (299)
T COG2074 96 GASGVGKSTIAGELARRL 113 (299)
T ss_pred CCCCCChhHHHHHHHHHc
Confidence 999999999999999876
No 31
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.98 E-value=0.00079 Score=64.91 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=28.2
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
.++|.+|.|+|+||+||||.+..|+..|....
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 45789999999999999999999999887654
No 32
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.87 E-value=0.0011 Score=66.82 Aligned_cols=28 Identities=29% Similarity=0.552 Sum_probs=25.4
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+.|++|.++|+||+||||++..|+..|.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999988775
No 33
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.67 E-value=0.00091 Score=66.55 Aligned_cols=54 Identities=26% Similarity=0.457 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCCC-cchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 384 AAMEEALVRILTPRR-SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 384 ~~l~~~L~~iL~p~~-~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..++..|..+..|+. ++....+|.+..++| .++.|+|+||.||||||-.|.-.+
T Consensus 20 pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G--~ivgflGaNGAGKSTtLKmLTGll 74 (325)
T COG4586 20 PGLKGSLNHFFHRKERSIEAVQDISFEIPKG--EIVGFLGANGAGKSTTLKMLTGLL 74 (325)
T ss_pred chhHHHHHhhcCchhhhhhhhheeeeecCCC--cEEEEEcCCCCcchhhHHHHhCcc
Confidence 345556666666654 344344444444555 699999999999999998776443
No 34
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.23 E-value=0.0034 Score=65.07 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=23.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
..|+|+||||+|||||++-|+.++..
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 59999999999999999999998853
No 35
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.23 E-value=0.0041 Score=62.65 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=27.0
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
+++.+|.|+|++|+||||++..|+.++...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 457899999999999999999999988764
No 36
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0075 Score=67.84 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=25.2
Q ss_pred cCCC-eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 412 QRKP-YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 412 ~~~p-~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+++| .+++|+||+|||||-+.-.||.+|-
T Consensus 517 p~rPigsFlF~GPTGVGKTELAkaLA~~Lf 546 (786)
T COG0542 517 PNRPIGSFLFLGPTGVGKTELAKALAEALF 546 (786)
T ss_pred CCCCceEEEeeCCCcccHHHHHHHHHHHhc
Confidence 4566 4999999999999999999998874
No 37
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.16 E-value=0.016 Score=64.25 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=23.4
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
...|..|+|+|+||+||||.+.-|+....
T Consensus 172 ~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 172 SPFPQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 45577899999999999998877766553
No 38
>PLN02796 D-glycerate 3-kinase
Probab=96.12 E-value=0.025 Score=58.35 Aligned_cols=90 Identities=16% Similarity=0.223 Sum_probs=54.1
Q ss_pred cCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhHHH
Q 013364 329 NLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHA 408 (444)
Q Consensus 329 ~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i~~ 408 (444)
.||.+++...+++...+ ...+|+.+.- ....+ -......+.+.+-|... -++..+..
T Consensus 31 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~--~~~~l----------~~~~~~~~~~~~~P~~~-~il~~l~~ 87 (347)
T PLN02796 31 GLTAEDVAESIDEWIAH----------GLRLCRLLQF--DELSL----------SASQKARVYHYYLPVYL-WCEDQLEA 87 (347)
T ss_pred CCCHHHHHHHHHHHHHH----------HHHHHHHcCC--CcccC----------CHHHHHHHHHHHcCcHH-HHHHHHHH
Confidence 57888776666665433 6677774431 11111 12223445555555432 23344433
Q ss_pred hh------hcCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 409 AK------EQRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 409 ~~------~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.. ...+|.+|.++|++|+||||.+..|+..|..
T Consensus 88 ~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 88 HRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred HHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 32 1136899999999999999999999988753
No 39
>COG4240 Predicted kinase [General function prediction only]
Probab=96.05 E-value=0.007 Score=58.95 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=29.9
Q ss_pred hhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 410 KEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 410 ~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
...++|.++.|+||.|+||||+.+-|-..|..++
T Consensus 45 qe~grPli~gisGpQGSGKStls~~i~~~L~~kg 78 (300)
T COG4240 45 QERGRPLIVGISGPQGSGKSTLSALIVRLLAAKG 78 (300)
T ss_pred hhcCCceEEEeecCCCCchhhHHHHHHHHHHHhc
Confidence 3578899999999999999999999888877665
No 40
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.02 E-value=0.0016 Score=65.56 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=25.7
Q ss_pred hHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 405 ~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
++.....+| .++.|+||||+||||++-.|+-.+.
T Consensus 23 ~vs~~i~~G--ei~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 23 GVSFEVEPG--EIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred ceeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCcC
Confidence 333333444 6999999999999999999886543
No 41
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.01 E-value=0.0063 Score=47.45 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=21.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+.+|.|+||+||||.+--|.+-|
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999998887655
No 42
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.01 E-value=0.033 Score=49.53 Aligned_cols=60 Identities=25% Similarity=0.319 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHH
Q 013364 358 KLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 358 ~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.|-..+...|.|+.+ +.+.+..+|...|... .+.+|-|++|-|++|||||-..--||.
T Consensus 18 ~L~~~L~~~l~GQhl---------a~~~v~~ai~~~l~~~-------------~p~KpLVlSfHG~tGtGKn~v~~liA~ 75 (127)
T PF06309_consen 18 GLEKDLQRNLFGQHL---------AVEVVVNAIKGHLANP-------------NPRKPLVLSFHGWTGTGKNFVSRLIAE 75 (127)
T ss_pred HHHHHHHHHccCcHH---------HHHHHHHHHHHHHcCC-------------CCCCCEEEEeecCCCCcHHHHHHHHHH
Confidence 445556666666543 3344555566666421 245799999999999999999999998
Q ss_pred HH
Q 013364 438 II 439 (444)
Q Consensus 438 ~l 439 (444)
.|
T Consensus 76 ~l 77 (127)
T PF06309_consen 76 HL 77 (127)
T ss_pred HH
Confidence 75
No 43
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.87 E-value=0.022 Score=64.49 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=23.2
Q ss_pred CCC-eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 413 RKP-YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 413 ~~p-~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
++| .+++|+||+|||||+..--||..|
T Consensus 485 ~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 485 HKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred CCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 456 379999999999999998888876
No 44
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.86 E-value=0.018 Score=66.21 Aligned_cols=28 Identities=25% Similarity=0.494 Sum_probs=23.8
Q ss_pred CCC-eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 413 RKP-YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 413 ~~p-~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
++| .+++|+||+||||||+..-||.++.
T Consensus 595 ~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 595 NRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 355 4899999999999999998988764
No 45
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.86 E-value=0.043 Score=61.96 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=23.3
Q ss_pred CCCe-EEEEEeeCCCChhhHHHHHHHHH
Q 013364 413 RKPY-VVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 413 ~~p~-vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
++|. +++|+||+|||||+..--||..|
T Consensus 481 ~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 481 NKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred CCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 4564 79999999999999988888876
No 46
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.86 E-value=0.0055 Score=62.94 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=23.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
..|+|+||+|+|||||+..|+.++..
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 58999999999999999999887754
No 47
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.85 E-value=0.0079 Score=61.76 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=28.0
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.++|++|.|+|++|+||||.+..|+.+|...
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4578999999999999999999999999754
No 48
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.82 E-value=0.0061 Score=61.50 Aligned_cols=28 Identities=32% Similarity=0.305 Sum_probs=25.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
--|++-||||+|||||+|-+-.|+.+++
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN~~~ 153 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYINKHK 153 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHhccC
Confidence 4899999999999999999999987764
No 49
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=95.74 E-value=0.0022 Score=65.86 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=25.9
Q ss_pred hHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 405 ~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
++.....+| .++.|+||||+||||++.-||-.+.
T Consensus 59 ~is~~i~~G--ei~gLlGpNGaGKSTLl~~L~Gl~~ 92 (340)
T PRK13536 59 GLSFTVASG--ECFGLLGPNGAGKSTIARMILGMTS 92 (340)
T ss_pred eeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 333333444 6999999999999999999987554
No 50
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=95.72 E-value=0.053 Score=64.27 Aligned_cols=106 Identities=18% Similarity=0.194 Sum_probs=57.5
Q ss_pred cchHHHHHHHccCCccCChhchHHHHHHHHHHHHhC-----------CCcHHHHHHHHHHHHHHhcccccccccchhHHH
Q 013364 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTK-----------NVAEEIAEKLCESVAASLEGKKLASFTRISSIV 382 (444)
Q Consensus 314 ~~~~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~k-----------dVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v 382 (444)
.|.|+..|....... +++ ..++++++|.+. .-..+++++|++.|...+.......+. ..|
T Consensus 117 ~g~f~~~f~~~~~~~--~~~----~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~---~~v 187 (1153)
T PLN03210 117 TGDFGEAFEKTCQNK--TED----EKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFE---DFV 187 (1153)
T ss_pred cchHHHHHHHHhccc--chh----HHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccc---ccc
Confidence 466777776543221 222 356777776532 223456677777776665422111111 111
Q ss_pred -HHHHHHHHHHHcCCCCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 383 -QAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 383 -~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
++.-.+.|...|.. ....+.+|.++|++|+||||.+-.|+..+..+
T Consensus 188 G~~~~l~~l~~lL~l--------------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 188 GIEDHIAKMSSLLHL--------------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred chHHHHHHHHHHHcc--------------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 11112234444431 12346899999999999998887777666543
No 51
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.70 E-value=0.023 Score=65.17 Aligned_cols=28 Identities=36% Similarity=0.655 Sum_probs=24.0
Q ss_pred CCCe-EEEEEeeCCCChhhHHHHHHHHHH
Q 013364 413 RKPY-VVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 413 ~~p~-vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
++|. +++|+||+|||||..+.-||..|-
T Consensus 593 ~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 593 RKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4564 899999999999999999998873
No 52
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.70 E-value=0.0026 Score=64.30 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=26.2
Q ss_pred HhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 404 ~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+++.....+| .++.|+||||+||||++--||-.+.
T Consensus 24 ~~vsl~i~~G--ei~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 24 DGLSFHVQRG--ECFGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred ecceEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3343333445 6999999999999999999986543
No 53
>PRK06526 transposase; Provisional
Probab=95.65 E-value=0.015 Score=57.54 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=24.8
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
+..++|+||.|+|||+.+..||..+.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 4679999999999999999999988653
No 54
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.64 E-value=0.0029 Score=60.23 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-||-.+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999998888654
No 55
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.60 E-value=0.071 Score=60.66 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=23.5
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
+.+++|+||+||||||.+..||..|..
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~ 373 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNR 373 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 348999999999999999999988743
No 56
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.56 E-value=0.0097 Score=46.70 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.4
Q ss_pred EEEEEeeCCCChhhHHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+|+++|+.|+||||....|+.+|
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 57
>PRK05439 pantothenate kinase; Provisional
Probab=95.54 E-value=0.014 Score=59.42 Aligned_cols=30 Identities=27% Similarity=0.468 Sum_probs=27.0
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+.|++|.+.|+.||||||++..|+..|..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999999998764
No 58
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.0034 Score=60.23 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+.-||-.+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999988886553
No 59
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.47 E-value=0.025 Score=64.63 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=23.6
Q ss_pred cCCC-eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 412 QRKP-YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 412 ~~~p-~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+++| .+++|+||+|||||+...-||.+|
T Consensus 535 ~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 535 PNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3456 468999999999999999999876
No 60
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.44 E-value=0.0044 Score=59.43 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=21.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+.-||-.+.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccC
Confidence 6999999999999999988886543
No 61
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.40 E-value=0.006 Score=59.33 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-||-.+
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 33 QVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 699999999999999999998653
No 62
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.40 E-value=0.011 Score=57.63 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=23.1
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+.+++++|++|+||||.+..++..+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999988765
No 63
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.36 E-value=0.0037 Score=59.41 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=21.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-||-.+
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999999888654
No 64
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.037 Score=56.87 Aligned_cols=65 Identities=18% Similarity=0.347 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHH
Q 013364 358 KLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 358 ~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
+|+..+-..++|++-. ...|--+|++..++..-|.. | +..=-|+.|+++||||||||--..-||.
T Consensus 8 eIV~eLd~yIIGQ~~A-----KkaVAIALRNR~RR~qL~~~----l------r~EV~PKNILMIGpTGVGKTEIARRLAk 72 (444)
T COG1220 8 EIVSELDRYIIGQDEA-----KKAVAIALRNRWRRMQLEEE----L------RDEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_pred HHHHHHHhHhcCcHHH-----HHHHHHHHHHHHHHHhcCHH----H------hhccCccceEEECCCCCcHHHHHHHHHH
Confidence 4555555566665432 34455566666665543321 1 1233589999999999999987655554
No 65
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.32 E-value=0.0041 Score=59.43 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-||-.+
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 799999999999999999888654
No 66
>PLN02200 adenylate kinase family protein
Probab=95.29 E-value=0.012 Score=57.30 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=24.9
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
...|.+|+++|+.|+||||-+.+||..|
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4468999999999999999999999765
No 67
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.27 E-value=0.028 Score=59.44 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=24.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.|..|+|+||+||||||..-.||..+.
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998764
No 68
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.22 E-value=0.0046 Score=59.80 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=26.5
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+.++.....+| .+++++|+||+||||.+--||-.+.
T Consensus 37 l~~vs~~i~~G--e~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 37 LKGISFTIEKG--EIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred eeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 34444333344 6999999999999999998886543
No 69
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.20 E-value=0.016 Score=60.49 Aligned_cols=26 Identities=27% Similarity=0.129 Sum_probs=23.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
..|+++||+|+|||||++-|+.++.+
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999888864
No 70
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.16 E-value=0.0046 Score=60.91 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=22.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--|+-.+.
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999998886553
No 71
>PF13245 AAA_19: Part of AAA domain
Probab=95.14 E-value=0.023 Score=45.79 Aligned_cols=27 Identities=33% Similarity=0.372 Sum_probs=22.6
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
..++++.||.|+|||||++.++.++..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 357888999999999888888877764
No 72
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.14 E-value=0.0053 Score=58.54 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=22.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+.-||-.+.
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 35 ECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999998886543
No 73
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.11 E-value=0.0062 Score=55.88 Aligned_cols=25 Identities=36% Similarity=0.313 Sum_probs=21.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+.-||-.+.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC
Confidence 6999999999999999998886543
No 74
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.03 E-value=0.0093 Score=57.33 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=21.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-||-.+
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 699999999999999999988654
No 75
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.03 E-value=0.005 Score=60.97 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-||-.+
T Consensus 34 e~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 34 SYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999998887654
No 76
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.98 E-value=0.0061 Score=55.82 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+.-|+-.+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999998886554
No 77
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.97 E-value=0.0079 Score=57.41 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-||-.+
T Consensus 41 e~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 699999999999999998887654
No 78
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.95 E-value=0.0057 Score=60.99 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--||-.+.
T Consensus 38 e~~~l~G~nGsGKSTLl~~l~Gl~~ 62 (289)
T PRK13645 38 KVTCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999998886553
No 79
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=94.92 E-value=0.0086 Score=57.30 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+.-|+-.+.
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 34 QVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred eEEEEECCCCCCHHHHHHHHhCccC
Confidence 6999999999999999988886654
No 80
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=94.90 E-value=0.0069 Score=59.71 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=21.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--||-.+.
T Consensus 40 e~~~i~G~NGsGKSTLl~~l~Gl~~ 64 (267)
T PRK15112 40 QTLAIIGENGSGKSTLAKMLAGMIE 64 (267)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999988886543
No 81
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.90 E-value=0.0059 Score=60.93 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-||-.+
T Consensus 34 e~~~iiG~NGaGKSTLl~~l~Gl~ 57 (287)
T PRK13641 34 SFVALVGHTGSGKSTLMQHFNALL 57 (287)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 699999999999999999988644
No 82
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.90 E-value=0.0063 Score=60.71 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--||-.+.
T Consensus 34 e~~~i~G~nGsGKSTLl~~L~Gl~~ 58 (286)
T PRK13646 34 KYYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999999986554
No 83
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.89 E-value=0.0058 Score=60.08 Aligned_cols=25 Identities=36% Similarity=0.307 Sum_probs=21.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--||-++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 38 KVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC
Confidence 6999999999999999988886543
No 84
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.88 E-value=0.006 Score=60.24 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 699999999999999998887654
No 85
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.87 E-value=0.01 Score=58.35 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-||-.+
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 48 AVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 689999999999999999988653
No 86
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.87 E-value=0.0064 Score=59.44 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=21.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+.-||-.+.
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (258)
T PRK11701 33 EVLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999988886543
No 87
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=94.85 E-value=0.011 Score=57.97 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=21.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 40 e~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 40 QVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 699999999999999998888654
No 88
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.84 E-value=0.0057 Score=58.87 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-||-.+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 32 EIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCC
Confidence 699999999999999998887554
No 89
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.83 E-value=0.0088 Score=56.48 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=22.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--||-.+.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccCC
Confidence 6999999999999999988886543
No 90
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.81 E-value=0.011 Score=58.43 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=24.8
Q ss_pred hHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 405 ~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
++.....+| .+++++|+||+||||.+.-||-.+
T Consensus 31 ~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 31 NVFCDIPRG--KVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred ceEEEEcCC--CEEEEECCCCCCHHHHHHHHhccc
Confidence 333333444 699999999999999998888654
No 91
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.81 E-value=0.0078 Score=57.04 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 689999999999999998887644
No 92
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.77 E-value=0.0074 Score=59.61 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=21.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--||-.+.
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 36 EYVAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999988876543
No 93
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.77 E-value=0.0098 Score=57.09 Aligned_cols=34 Identities=32% Similarity=0.345 Sum_probs=24.9
Q ss_pred HhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 404 ~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.++.....+| .+++++|+||+||||.+.-||-.+
T Consensus 39 ~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 39 KDVSFEVPRG--ERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred eeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCC
Confidence 3343333344 699999999999999998887543
No 94
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=94.74 E-value=0.0077 Score=59.22 Aligned_cols=25 Identities=28% Similarity=0.191 Sum_probs=21.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--||-.+.
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T TIGR02769 38 ETVGLLGRSGCGKSTLARLLLGLEK 62 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999988886543
No 95
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.73 E-value=0.0078 Score=58.53 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+.-||-.+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 32 EIVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcC
Confidence 6999999999999999998886543
No 96
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.73 E-value=0.0071 Score=60.10 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--||-++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDGLLE 58 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999999887654
No 97
>CHL00181 cbbX CbbX; Provisional
Probab=94.68 E-value=0.077 Score=53.31 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.3
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
+..|+|.|+.|+||||.+--||..+..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~ 85 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYK 85 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999887643
No 98
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.68 E-value=0.0071 Score=60.38 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--||-.+.
T Consensus 34 e~~~i~G~nGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13637 34 EFVGLIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 6999999999999999999886654
No 99
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.68 E-value=0.014 Score=56.82 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--||-.+.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 34 SITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccc
Confidence 6999999999999999998887654
No 100
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.67 E-value=0.0072 Score=59.79 Aligned_cols=36 Identities=31% Similarity=0.332 Sum_probs=26.5
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+.++.....+| .+++++|+||+||||.+-.||-.+.
T Consensus 40 l~~is~~i~~G--e~~~liG~NGsGKSTLlk~L~Gl~~ 75 (264)
T PRK13546 40 LDDISLKAYEG--DVIGLVGINGSGKSTLSNIIGGSLS 75 (264)
T ss_pred EeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 33443333444 6999999999999999999986543
No 101
>PLN02165 adenylate isopentenyltransferase
Probab=94.66 E-value=0.024 Score=58.26 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=23.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+..+|+++||||+||||..-.||..+
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 44699999999999999999998865
No 102
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=94.64 E-value=0.013 Score=56.97 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.+++++|+||+||||.+--||-.
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 34 EIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHcCC
Confidence 69999999999999999888753
No 103
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=94.64 E-value=0.0082 Score=59.05 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++|+|+||+||||.+.-||-.+
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 34 HFTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 699999999999999998887644
No 104
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.63 E-value=0.0093 Score=56.09 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=22.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+++++|+||+||||.+--||-.+.-
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~~~~ 57 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCC
Confidence 69999999999999999988865543
No 105
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.62 E-value=0.012 Score=57.21 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.+++++|+||+||||.+--||-.
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 33 RVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 69999999999999999988854
No 106
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.61 E-value=0.04 Score=49.65 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=20.6
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
++..|+|||++||||||.|-.|..
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhc
Confidence 356889999999999999988853
No 107
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.59 E-value=0.023 Score=55.82 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=22.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
..|+|+|++|+||||++.-|..++-.
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred eEEEEECCCccccchHHHHHhhhccc
Confidence 69999999999999999988876543
No 108
>PRK13764 ATPase; Provisional
Probab=94.54 E-value=0.028 Score=62.03 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=24.2
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
...|+++|++|+||||+++.|+.++..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356999999999999999999998864
No 109
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.54 E-value=0.13 Score=59.28 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=23.7
Q ss_pred CCC-eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 413 RKP-YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 413 ~~p-~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
++| .+++|+||+|||||+...-||..+.
T Consensus 592 ~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~ 620 (852)
T TIGR03346 592 NRPIGSFLFLGPTGVGKTELAKALAEFLF 620 (852)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 355 5799999999999999999998764
No 110
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.54 E-value=0.061 Score=56.96 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=24.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.|..|+|+||+|+||||....||..+.
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~ 72 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLAN 72 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999999988764
No 111
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=94.52 E-value=0.014 Score=56.56 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.+++++|+||+||||.+--|+-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 32 EITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 69999999999999999988754
No 112
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.51 E-value=0.0081 Score=59.54 Aligned_cols=29 Identities=34% Similarity=0.393 Sum_probs=24.0
Q ss_pred hhcCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 410 KEQRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 410 ~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..+| .+++++|+||+||||.+--||-.+.
T Consensus 28 i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 28 IPEG--SKTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred EcCC--CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3444 6999999999999999999886553
No 113
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.48 E-value=0.009 Score=59.40 Aligned_cols=25 Identities=40% Similarity=0.430 Sum_probs=21.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--||-.+.
T Consensus 34 e~~~i~G~nGaGKSTLl~~i~G~~~ 58 (279)
T PRK13635 34 EWVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 6999999999999999998886543
No 114
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.47 E-value=0.016 Score=52.97 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=22.7
Q ss_pred hcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 411 EQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 411 ~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+| .+++++|+||+||||.+.-||-.+
T Consensus 24 ~~G--e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 24 RRG--EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred eCC--CEEEEECCCCCCHHHHHHHHhCCC
Confidence 444 699999999999999999887544
No 115
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=94.45 E-value=0.016 Score=56.95 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 37 e~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 37 QITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhh
Confidence 699999999999999999888654
No 116
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=94.44 E-value=0.013 Score=57.77 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=22.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+.-|+-.+.
T Consensus 46 e~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 46 TVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 6999999999999999999987653
No 117
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=94.40 E-value=0.0081 Score=61.70 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 32 ei~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 32 EIFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 699999999999999999887654
No 118
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.39 E-value=0.014 Score=54.98 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+.-||-.+.
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccC
Confidence 6999999999999999998886543
No 119
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.39 E-value=0.016 Score=51.95 Aligned_cols=24 Identities=38% Similarity=0.375 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--|+-.+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 699999999999999998887654
No 120
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.35 E-value=0.019 Score=59.41 Aligned_cols=24 Identities=29% Similarity=0.366 Sum_probs=21.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
-+++|+||.|+||||+|-.||-+.
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998553
No 121
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=94.35 E-value=0.01 Score=64.68 Aligned_cols=33 Identities=27% Similarity=0.251 Sum_probs=25.4
Q ss_pred hHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 405 ~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
++......| .++++||+||+||||.+.-||-.+
T Consensus 25 ~vs~~i~~G--e~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 25 DISLSFFPG--AKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred CceEEECCC--CEEEEECCCCCCHHHHHHHHhCCC
Confidence 343334455 589999999999999999988654
No 122
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.30 E-value=0.015 Score=58.07 Aligned_cols=23 Identities=39% Similarity=0.671 Sum_probs=21.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.+++++|+||+||||.+.-||-.
T Consensus 66 e~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 66 YVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 69999999999999999988864
No 123
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=94.29 E-value=0.018 Score=62.01 Aligned_cols=25 Identities=32% Similarity=0.398 Sum_probs=22.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+.-||-.+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 32 EIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999998886543
No 124
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.28 E-value=0.011 Score=58.29 Aligned_cols=24 Identities=38% Similarity=0.245 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 36 e~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 36 QWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 699999999999999998887654
No 125
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.25 E-value=0.017 Score=56.58 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-|+-.+
T Consensus 39 e~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 39 SVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999888543
No 126
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.24 E-value=0.017 Score=57.25 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-||-.+
T Consensus 47 e~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 47 KIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 689999999999999999888554
No 127
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.23 E-value=0.031 Score=52.25 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.+++++|+||+||||.+--||-
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6999999999999999988874
No 128
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.23 E-value=0.034 Score=51.40 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.+++|+|+.||||||.|-.|.-
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLP 57 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 7999999999999999877654
No 129
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.21 E-value=0.017 Score=56.08 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-||-.+
T Consensus 32 e~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 32 EVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 699999999999999999988664
No 130
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.20 E-value=0.011 Score=59.69 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=22.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--||-.+.
T Consensus 34 e~v~iiG~nGsGKSTLl~~L~Gl~~ 58 (305)
T PRK13651 34 EFIAIIGQTGSGKTTFIEHLNALLL 58 (305)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 6999999999999999988886553
No 131
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.20 E-value=0.012 Score=58.99 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+..||-.+
T Consensus 64 e~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 64 EMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999999888644
No 132
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.20 E-value=0.067 Score=52.57 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=23.4
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+.+..|+|.||.|+||||.+--+|..|.
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3457899999999999999988887664
No 133
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.19 E-value=0.012 Score=59.98 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=27.3
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
++++.....+| .+++++|+||+||||.+--||-.+.-
T Consensus 42 L~~vsl~i~~G--e~~~I~G~nGsGKSTLl~~L~Gl~~p 78 (320)
T PRK13631 42 LNNISYTFEKN--KIYFIIGNSGSGKSTLVTHFNGLIKS 78 (320)
T ss_pred eeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444333444 69999999999999999998876543
No 134
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=94.16 E-value=0.095 Score=52.36 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=27.5
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
...|+||.++|+-|||||||...|++.|.+-
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~ 109 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLSRW 109 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHhhC
Confidence 3469999999999999999999999988764
No 135
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=94.16 E-value=0.011 Score=60.96 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.++.++|+||+||||.+..|+-.+.
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~gl~~ 56 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVNLLER 56 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999999987554
No 136
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.15 E-value=0.024 Score=57.35 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=23.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
..|+|+|+||+||||.+..|+.++..
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCc
Confidence 59999999999999999999877643
No 137
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=94.13 E-value=0.011 Score=57.75 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-|+-.+
T Consensus 32 e~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 32 DVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999999888654
No 138
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.13 E-value=0.075 Score=50.31 Aligned_cols=28 Identities=21% Similarity=0.108 Sum_probs=24.5
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+..|+|+|+.||||||.+..++..+.+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3568999999999999999999987754
No 139
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.12 E-value=0.022 Score=51.28 Aligned_cols=25 Identities=40% Similarity=0.531 Sum_probs=21.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--|+..+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7999999999999999988876543
No 140
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.12 E-value=0.033 Score=54.42 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=21.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-||-.+
T Consensus 39 e~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 39 EVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 689999999999999999988654
No 141
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=94.10 E-value=0.013 Score=63.01 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+..|+-.+
T Consensus 280 e~~~iiG~NGsGKSTLlk~l~G~~ 303 (501)
T PRK11288 280 EIVGLFGLVGAGRSELMKLLYGAT 303 (501)
T ss_pred cEEEEEcCCCCCHHHHHHHHcCCC
Confidence 699999999999999999888544
No 142
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.10 E-value=0.02 Score=56.54 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 34 SIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999998887544
No 143
>PRK04195 replication factor C large subunit; Provisional
Probab=94.08 E-value=0.047 Score=58.63 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=22.8
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+..++|.||.|+||||.+..||..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999998865
No 144
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.07 E-value=0.018 Score=57.42 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-||-.+
T Consensus 66 e~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 66 QVTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 699999999999999998887544
No 145
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=94.06 E-value=0.013 Score=63.49 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=21.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--||-.+.
T Consensus 346 e~~~l~G~NGsGKSTLl~~i~G~~~ 370 (530)
T PRK15064 346 ERLAIIGENGVGKTTLLRTLVGELE 370 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999998886543
No 146
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=94.06 E-value=0.013 Score=58.27 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=21.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--||-.+.
T Consensus 37 e~~~l~G~nGsGKSTLl~~l~Gl~~ 61 (280)
T PRK13633 37 EFLVILGRNGSGKSTIAKHMNALLI 61 (280)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999988875443
No 147
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.06 E-value=0.025 Score=56.26 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--||-++.
T Consensus 34 e~~~I~G~nGaGKSTLl~~l~G~~~ 58 (282)
T PRK13640 34 SWTALIGHNGSGKSTISKLINGLLL 58 (282)
T ss_pred CEEEEECCCCCcHHHHHHHHhcccC
Confidence 6999999999999999999997764
No 148
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=94.05 E-value=0.034 Score=54.88 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 34 KITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999998887654
No 149
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.04 E-value=0.012 Score=58.84 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=21.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--|+-.+.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (290)
T PRK13634 34 SYVAIIGHTGSGKSTLLQHLNGLLQ 58 (290)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 6999999999999999988876543
No 150
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=94.03 E-value=0.019 Score=56.69 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--||-.+.
T Consensus 51 e~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 51 EVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 6999999999999999999987653
No 151
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.02 E-value=0.013 Score=58.38 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=22.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--||-.+.
T Consensus 33 e~~~i~G~nGaGKSTLl~~i~Gl~~ 57 (283)
T PRK13636 33 EVTAILGGNGAGKSTLFQNLNGILK 57 (283)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999988886553
No 152
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=94.00 E-value=0.023 Score=61.10 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=26.5
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+.++.....+| .+++++|+||+||||.+-.||-.+.
T Consensus 278 l~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~i~Gl~~ 313 (506)
T PRK13549 278 VDDVSFSLRRG--EILGIAGLVGAGRTELVQCLFGAYP 313 (506)
T ss_pred ccceeeEEcCC--cEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 33343333444 6999999999999999999886553
No 153
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.99 E-value=0.021 Score=60.32 Aligned_cols=21 Identities=48% Similarity=0.556 Sum_probs=17.6
Q ss_pred eEEEEEeeCCCChhhHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA 436 (444)
.-|++||||||||||.|--|-
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~ 634 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLI 634 (807)
T ss_pred ceeEEECCCCccHHHHHHHHh
Confidence 359999999999999886554
No 154
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.98 E-value=0.039 Score=54.71 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+|+|+|++|+||||++.-|..++.
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhC
Confidence 4899999999999999988876654
No 155
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.98 E-value=0.22 Score=49.86 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.-|+|.|+.|+||||...-||.++.+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999888887754
No 156
>PRK09183 transposase/IS protein; Provisional
Probab=93.97 E-value=0.053 Score=53.59 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=23.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
..++|+||+|+||||.+.-||..+...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~ 129 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRA 129 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 578899999999999999998876543
No 157
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=93.95 E-value=0.015 Score=62.53 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 290 e~~~l~G~NGsGKSTLlk~i~Gl~ 313 (510)
T PRK09700 290 EILGFAGLVGSGRTELMNCLFGVD 313 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999999888654
No 158
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.94 E-value=0.023 Score=55.26 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 32 EITALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 699999999999999999988653
No 159
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.94 E-value=0.058 Score=53.01 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=24.7
Q ss_pred hcCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 411 EQRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 411 ~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..+.| .++|-||.|+||||++-+||+-|+
T Consensus 45 ~gnmP-~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 45 EGNMP-NLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred cCCCC-ceEeeCCCCCchhhHHHHHHHHHh
Confidence 34456 678999999999999999999875
No 160
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=93.92 E-value=0.039 Score=52.96 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=30.3
Q ss_pred hcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhcC
Q 013364 411 EQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDFG 444 (444)
Q Consensus 411 ~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~g 444 (444)
...-|.+|.|-||.|+||||+..-|-+.|.++||
T Consensus 27 G~~~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~ 60 (282)
T KOG2878|consen 27 GDDVPLVIGFSGPQGSGKSTLVFALDYKLTKKYI 60 (282)
T ss_pred CCcCcEEEEecCCCCCCceeehhhhHHHHHHHhc
Confidence 3456999999999999999999999999988875
No 161
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=93.91 E-value=0.024 Score=61.80 Aligned_cols=33 Identities=27% Similarity=0.251 Sum_probs=24.9
Q ss_pred hHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 405 ~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
++......| .++++||+||+||||.+.-||-.+
T Consensus 23 ~is~~i~~G--e~~~liG~NGsGKSTLl~~i~G~~ 55 (552)
T TIGR03719 23 DISLSFFPG--AKIGVLGLNGAGKSTLLRIMAGVD 55 (552)
T ss_pred CceEEECCC--CEEEEECCCCCCHHHHHHHHhCCC
Confidence 333333444 689999999999999999888544
No 162
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=93.90 E-value=0.014 Score=62.80 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-||-.+
T Consensus 32 e~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 32 EIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCc
Confidence 699999999999999998887654
No 163
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.90 E-value=0.016 Score=56.79 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=21.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+.-||-.+.
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~Gl~~ 72 (257)
T cd03288 48 QKVGICGRTGSGKSSLSLAFFRMVD 72 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHHcccC
Confidence 6999999999999999998886543
No 164
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.88 E-value=0.13 Score=51.98 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=28.7
Q ss_pred hcCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 411 EQRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 411 ~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
..|++.+|-+-||.||||||.+-+|...|...
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~ 78 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRER 78 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHC
Confidence 35788999999999999999999999998654
No 165
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=93.88 E-value=0.013 Score=63.26 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 38 e~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 38 EVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999998887554
No 166
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=93.87 E-value=0.048 Score=57.74 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=24.8
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+|.+|.++|++|+||||.+..|...|.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~ 237 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFR 237 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 799999999999999999999987764
No 167
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.47 Score=53.08 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=23.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
.++||+||.|||||.-..-||.-|-++|
T Consensus 439 kIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 439 KILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred cEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 6999999999999988888888776554
No 168
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=93.85 E-value=0.013 Score=60.44 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++||||+||||.+-.||-.+.
T Consensus 33 e~~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 33 TMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCCC
Confidence 6999999999999999999986543
No 169
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.85 E-value=0.042 Score=60.44 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=24.1
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+++.+|.++|+||+||||.+.+|+..+
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 457899999999999999999998764
No 170
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=93.84 E-value=0.039 Score=55.31 Aligned_cols=25 Identities=36% Similarity=0.371 Sum_probs=21.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++|+|++||||||+|-.|.-...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 6899999999999999998876543
No 171
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.84 E-value=0.067 Score=53.96 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=25.0
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
-.+|.|+|++|+||||.|-+|+..|...
T Consensus 104 ~~~v~l~G~pGsGKTTLl~~l~~~l~~~ 131 (290)
T PRK10463 104 QLVLNLVSSPGSGKTTLLTETLMRLKDS 131 (290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 5799999999999999999999887643
No 172
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.82 E-value=0.024 Score=55.60 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+.-||-.+.
T Consensus 34 e~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (261)
T PRK14258 34 KVTAIIGPSGCGKSTFLKCLNRMNE 58 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccC
Confidence 6999999999999999988886543
No 173
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=93.81 E-value=0.026 Score=60.48 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=21.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 287 e~~~l~G~NGsGKSTLl~~l~G~~ 310 (500)
T TIGR02633 287 EILGVAGLVGAGRTELVQALFGAY 310 (500)
T ss_pred cEEEEeCCCCCCHHHHHHHHhCCC
Confidence 699999999999999999888554
No 174
>PRK13409 putative ATPase RIL; Provisional
Probab=93.81 E-value=0.026 Score=62.26 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=23.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
.++.+||+||+||||.+--||-.+.-+.
T Consensus 100 ev~gLvG~NGaGKSTLlkiL~G~l~p~~ 127 (590)
T PRK13409 100 KVTGILGPNGIGKTTAVKILSGELIPNL 127 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCC
Confidence 6999999999999999988887654433
No 175
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.80 E-value=0.042 Score=60.29 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..|+|+||+|+|||||+.-+..++
T Consensus 317 Glilv~G~tGSGKTTtl~a~l~~~ 340 (564)
T TIGR02538 317 GMVLVTGPTGSGKTVSLYTALNIL 340 (564)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhh
Confidence 489999999999999997666655
No 176
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=93.78 E-value=0.023 Score=56.16 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 52 e~~~I~G~nGsGKSTLl~~laGl~ 75 (272)
T PRK14236 52 RVTAFIGPSGCGKSTLLRCFNRMN 75 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 699999999999999999888654
No 177
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=93.75 E-value=0.017 Score=64.12 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+|++|||||+||||.+--|+-.+
T Consensus 339 e~~~l~G~NGsGKSTLlk~l~G~~ 362 (638)
T PRK10636 339 SRIGLLGRNGAGKSTLIKLLAGEL 362 (638)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999999888544
No 178
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.75 E-value=0.046 Score=47.19 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.9
Q ss_pred eEEEEEeeCCCChhhHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA 436 (444)
..++++|++|+||||++.-|+
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 689999999999999988764
No 179
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.74 E-value=0.028 Score=53.46 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 689999999999999998887644
No 180
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=93.73 E-value=0.024 Score=60.70 Aligned_cols=23 Identities=39% Similarity=0.297 Sum_probs=20.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.+++++|+||+||||.+.-||-.
T Consensus 287 e~~~i~G~NGsGKSTLl~~l~G~ 309 (490)
T PRK10938 287 EHWQIVGPNGAGKSTLLSLITGD 309 (490)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 69999999999999999988863
No 181
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.72 E-value=0.016 Score=57.91 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 33 e~v~i~G~nGsGKSTLl~~l~Gl~ 56 (288)
T PRK13643 33 SYTALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 699999999999999998887544
No 182
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.72 E-value=0.026 Score=55.27 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--||-.+.
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 34 KVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 6999999999999998888886543
No 183
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=93.68 E-value=0.025 Score=55.80 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=20.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 39 e~~~i~G~nGsGKSTLl~~l~Gl~ 62 (268)
T PRK10419 39 ETVALLGRSGCGKSTLARLLVGLE 62 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999988887543
No 184
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=93.68 E-value=0.033 Score=54.75 Aligned_cols=24 Identities=33% Similarity=0.264 Sum_probs=21.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
--.+++|+||+||||.|.-|+.++
T Consensus 58 e~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 58 EHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred CcEEEECCCCCCHHHHHHHHhccc
Confidence 368899999999999999888765
No 185
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.67 E-value=0.083 Score=53.08 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.7
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.++|.||.|+||||++..+|..+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 588999999999999999998774
No 186
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=93.66 E-value=0.015 Score=63.30 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=21.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-|+-.+
T Consensus 349 e~~~l~G~NGsGKSTLl~~l~G~~ 372 (552)
T TIGR03719 349 GIVGVIGPNGAGKSTLFRMITGQE 372 (552)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 699999999999999998887543
No 187
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.64 E-value=0.017 Score=57.20 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+--||-.+.
T Consensus 34 e~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (277)
T PRK13642 34 EWVSIIGQNGSGKSTTARLIDGLFE 58 (277)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 6999999999999999998886553
No 188
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.62 E-value=0.67 Score=44.07 Aligned_cols=105 Identities=20% Similarity=0.322 Sum_probs=62.4
Q ss_pred eEEEeecCcEEEEeecccCCCCCCCcHHHHHHHhHhhcccCC-C-ceeeccCCCceeeEEEEecccceEEEEEeccccch
Q 013364 4 QLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGL-A-SFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHL 81 (444)
Q Consensus 4 ~f~IftkgGiVLWs~~~~~~~~~~~pin~LI~~vllEeR~~~-~-~~~~~~~~d~y~lkw~~~Ne~~LVFVvvYQ~iL~L 81 (444)
.++.+.||-+||=-.+.. ...++ -|-.-+||.=.++ + .|+| ++|+|+.++...|.|=...|+.=----+.
T Consensus 4 iYs~VARGTvvLaeft~~-~gNf~-----sva~qiL~klp~~~n~k~tY--s~d~y~Fh~l~~dg~tylcvadds~gR~i 75 (217)
T KOG0859|consen 4 IYSFVARGTVILAEFTEF-SGNFS-----SIAAQILQKLPSSSNSKFTY--SCDGYTFHYLVEDGLTYLCVADDSAGRQI 75 (217)
T ss_pred eEEEEecceEEEEeeeec-cCCHH-----HHHHHHHHhCCCCCCCceEE--ecCCeEEEEEEeCCeEEEEEEeccccccc
Confidence 467889999999642211 11122 2333444444433 2 3333 22999999999997544444432222223
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCC---CCcchHHHHHHHHHH
Q 013364 82 LYVDDLLAMMKQSFSEIYDPKRT---DYSDFDEMFRQLRKE 119 (444)
Q Consensus 82 ~yvD~LL~~vk~~F~~~y~~~~~---~~~~Fd~~F~~~l~~ 119 (444)
++ .||++||..|.+.|+-... .| ..+++|-++|++
T Consensus 76 pf--aFLe~Ik~~F~k~YG~~a~ta~Ay-smN~EFs~vL~q 113 (217)
T KOG0859|consen 76 PF--AFLERIKEDFKKRYGGGAHTAVAY-SMNKEFSSVLKQ 113 (217)
T ss_pred cH--HHHHHHHHHHHHHhccchhHHHHh-HhHHHHHHHHHH
Confidence 33 3799999999999986543 24 566667666644
No 189
>PRK06921 hypothetical protein; Provisional
Probab=93.61 E-value=0.066 Score=53.21 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=25.6
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
...++|.|++|+|||+.+..||..+.++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 4689999999999999999999998875
No 190
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=93.60 E-value=0.026 Score=61.04 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=25.1
Q ss_pred hHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 405 ~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
++......| .++++||+||+||||.+.-||-.+
T Consensus 27 ~isl~i~~G--e~~~iiG~nGsGKSTLl~~i~G~~ 59 (529)
T PRK15134 27 DVSLQIEAG--ETLALVGESGSGKSVTALSILRLL 59 (529)
T ss_pred ceEEEEeCC--CEEEEECCCCCcHHHHHHHHhcCC
Confidence 333333444 699999999999999999888654
No 191
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.58 E-value=0.02 Score=53.77 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999988887544
No 192
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.57 E-value=0.054 Score=54.78 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=22.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
..|+++|++|+||||++.-|+.++.+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 47889999999999999999987754
No 193
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=93.56 E-value=0.089 Score=57.76 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.8
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
..+++||||.||||||..-.||..|.+
T Consensus 103 ~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 103 KQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHh
Confidence 359999999999999999999987653
No 194
>PRK10436 hypothetical protein; Provisional
Probab=93.55 E-value=0.051 Score=58.27 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
-.|+|+||+|+|||||+.-+-.++
T Consensus 219 GliLvtGpTGSGKTTtL~a~l~~~ 242 (462)
T PRK10436 219 GLILVTGPTGSGKTVTLYSALQTL 242 (462)
T ss_pred CeEEEECCCCCChHHHHHHHHHhh
Confidence 489999999999999997655554
No 195
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=93.54 E-value=0.065 Score=55.59 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=24.9
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
+..+++|+||.|+||||.+..||..|..
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4579999999999999999999988754
No 196
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.54 E-value=0.039 Score=56.98 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..|+++|++|+||||++.-|+.++
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHccc
Confidence 589999999999999999988765
No 197
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=93.54 E-value=0.018 Score=61.72 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+-.|+-.+
T Consensus 275 e~~~l~G~nGsGKSTLl~~l~Gl~ 298 (491)
T PRK10982 275 EILGIAGLVGAKRTDIVETLFGIR 298 (491)
T ss_pred cEEEEecCCCCCHHHHHHHHcCCC
Confidence 699999999999999998887544
No 198
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.52 E-value=0.033 Score=54.22 Aligned_cols=37 Identities=35% Similarity=0.380 Sum_probs=27.1
Q ss_pred hhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 401 d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+|+++.....+| -.++++||.|+||||.|.-|+-..
T Consensus 19 ~~L~~v~l~i~~G--e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 19 EALKDVNLEIEAG--EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EecccceEEEcCC--CEEEEECCCCCCHHHHHHHHhccc
Confidence 3444444444455 599999999999999999887543
No 199
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.51 E-value=0.042 Score=59.22 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+|+|+||||+|||||+.-+..++
T Consensus 243 GlilitGptGSGKTTtL~a~L~~l 266 (486)
T TIGR02533 243 GIILVTGPTGSGKTTTLYAALSRL 266 (486)
T ss_pred CEEEEEcCCCCCHHHHHHHHHhcc
Confidence 489999999999999998765554
No 200
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.51 E-value=0.029 Score=55.72 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--|+-.+
T Consensus 48 e~~~I~G~nGsGKSTLl~~l~Gl~ 71 (276)
T PRK14271 48 AVTSLMGPTGSGKTTFLRTLNRMN 71 (276)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 689999999999999998887543
No 201
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=93.51 E-value=0.017 Score=63.95 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=26.7
Q ss_pred HhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 404 ~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+|.+...+| .++++||+||+||||.+.-||-.+.
T Consensus 33 ~~is~~v~~G--e~~~lvG~nGsGKSTLl~~l~Gll~ 67 (623)
T PRK10261 33 RNLSFSLQRG--ETLAIVGESGSGKSVTALALMRLLE 67 (623)
T ss_pred EeeEEEECCC--CEEEEECCCCChHHHHHHHHHcCCC
Confidence 3444434444 6999999999999999999987654
No 202
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.49 E-value=0.029 Score=55.07 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 37 e~~~i~G~nGsGKSTLl~~iaG~~ 60 (257)
T PRK14246 37 SIFGIMGPSGSGKSTLLKVLNRLI 60 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999999888654
No 203
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=93.47 E-value=0.017 Score=55.06 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-||-.+
T Consensus 32 ~~~~I~G~nGsGKStLl~~l~G~~ 55 (220)
T TIGR02982 32 EIVILTGPSGSGKTTLLTLIGGLR 55 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999999888654
No 204
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.44 E-value=0.051 Score=53.35 Aligned_cols=53 Identities=25% Similarity=0.238 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCC---CcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 385 AMEEALVRILTPR---RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 385 ~l~~~L~~iL~p~---~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+...+...+.+. ....+|++|.+...+| -.|.+||.||+||||.+--||--+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~aL~disf~i~~G--e~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 22 SLKKRLKGLAKGGRKVAEFWALKDISFEIYKG--ERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred hHHHHHHHHhcCCCCcceEEEecCceEEEeCC--CEEEEECCCCCcHHHHHHHHhCcc
Confidence 3444455555332 2245577777666566 589999999999999998777443
No 205
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=93.44 E-value=0.052 Score=53.46 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 47 e~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 47 KITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 699999999999999999888654
No 206
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.43 E-value=0.046 Score=56.13 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=21.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..|+|+|++|+||||++.-|+.++
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999888765
No 207
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=93.42 E-value=0.019 Score=62.69 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-||-.+
T Consensus 351 e~~~l~G~NGsGKSTLl~~i~G~~ 374 (556)
T PRK11819 351 GIVGIIGPNGAGKSTLFKMITGQE 374 (556)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999888543
No 208
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.42 E-value=0.12 Score=56.25 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=22.5
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..+.++.||.|+|||||+-.||.-|
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3599999999999999999999865
No 209
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=93.35 E-value=0.02 Score=63.53 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+|++||+||+||||.|..||-.+
T Consensus 346 e~~~l~G~NGsGKSTLlk~l~G~~ 369 (635)
T PRK11147 346 DKIALIGPNGCGKTTLLKLMLGQL 369 (635)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999888644
No 210
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=93.30 E-value=0.022 Score=61.50 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-|+-.+
T Consensus 290 e~~~l~G~NGsGKSTLl~~i~Gl~ 313 (510)
T PRK15439 290 EILGLAGVVGAGRTELAETLYGLR 313 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCC
Confidence 699999999999999998887544
No 211
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=93.28 E-value=0.023 Score=60.99 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+-.|+-.+
T Consensus 279 e~~~liG~NGsGKSTLl~~l~G~~ 302 (501)
T PRK10762 279 EILGVSGLMGAGRTELMKVLYGAL 302 (501)
T ss_pred cEEEEecCCCCCHHHHHHHHhCCC
Confidence 699999999999999998887544
No 212
>PLN03073 ABC transporter F family; Provisional
Probab=93.28 E-value=0.027 Score=63.51 Aligned_cols=32 Identities=28% Similarity=0.270 Sum_probs=24.0
Q ss_pred HhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHH
Q 013364 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 404 ~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.++......| ..+.+||+||+||||.+.-||-
T Consensus 194 ~~isl~i~~G--e~~gLvG~NGsGKSTLLr~l~g 225 (718)
T PLN03073 194 VDASVTLAFG--RHYGLVGRNGTGKTTFLRYMAM 225 (718)
T ss_pred ECCEEEECCC--CEEEEECCCCCCHHHHHHHHcC
Confidence 3343333444 5899999999999999998873
No 213
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=93.24 E-value=0.026 Score=61.06 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=26.0
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+.++.....+| .+++++|+||+||||.+--||-++
T Consensus 302 l~~isl~i~~G--e~~~i~G~nGsGKSTLlk~l~Gl~ 336 (529)
T PRK15134 302 VKNISFTLRPG--ETLGLVGESGSGKSTTGLALLRLI 336 (529)
T ss_pred eecceeEEcCC--CEEEEECCCCCCHHHHHHHHhCcC
Confidence 33444333444 699999999999999998888654
No 214
>PRK00098 GTPase RsgA; Reviewed
Probab=93.20 E-value=0.039 Score=55.62 Aligned_cols=24 Identities=42% Similarity=0.497 Sum_probs=20.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++|+|++||||||.|-.|+-.+
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 589999999999999999887543
No 215
>COG3910 Predicted ATPase [General function prediction only]
Probab=93.18 E-value=0.069 Score=50.90 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.8
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
++.|.+|+|-|||||||.|--||.-.
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~~ 61 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAGM 61 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhhc
Confidence 56799999999999999999888643
No 216
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=93.18 E-value=0.02 Score=61.74 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=25.2
Q ss_pred HhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 404 ~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.++.....+| .+++++|+||+||||.+.-|+-.+
T Consensus 301 ~~is~~i~~G--e~~~l~G~NGsGKSTLl~~l~Gl~ 334 (520)
T TIGR03269 301 DNVSLEVKEG--EIFGIVGTSGAGKTTLSKIIAGVL 334 (520)
T ss_pred eeEEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCC
Confidence 3343333444 699999999999999998887554
No 217
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=0.63 Score=52.05 Aligned_cols=28 Identities=25% Similarity=0.352 Sum_probs=23.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
.++|||||.|||||....-||.-|.++|
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~Rkf 378 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGRKF 378 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCCCE
Confidence 4999999999999988888887766554
No 218
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.16 E-value=0.069 Score=54.70 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=21.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..|+|+|++|+||||++.-|+.++.
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999887763
No 219
>PRK06851 hypothetical protein; Provisional
Probab=93.16 E-value=0.27 Score=51.23 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhHHHhhhcCCCeE
Q 013364 338 ALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYV 417 (444)
Q Consensus 338 ~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~~p~v 417 (444)
+.++++.. ....+..+-+.++.+.+..++.+....... . ..++ .-+.--.+|...++.+..+. .+-.++
T Consensus 148 ihdd~e~~-y~~~md~~k~~~~~~~l~~~l~~~~~~~~~-~-g~~r----h~F~ga~Tp~G~~s~~~~l~----~~~~~~ 216 (367)
T PRK06851 148 IHDEWEKI-YIENMDFAKANELTDELIQELFKGAPGKIS-K-GKVR----HLFLGAITPKGAVDFVPSLT----EGVKNR 216 (367)
T ss_pred HHHHHHHH-HHHhCCHHHHHHHHHHHHHHHhccCccccc-C-Ccee----eeeccccCCCcHHhhHHhHh----cccceE
Confidence 45566543 445688888888888888776644321100 0 0111 11222335666665543332 344679
Q ss_pred EEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 418 VVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 418 I~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
+++-|+.|+||||.+.+||..+.++
T Consensus 217 ~~i~G~pG~GKstl~~~i~~~a~~~ 241 (367)
T PRK06851 217 YFLKGRPGTGKSTMLKKIAKAAEER 241 (367)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhC
Confidence 9999999999999999999988654
No 220
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.14 E-value=0.072 Score=53.24 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
-.|.|||++|+|||||+|-+--|
T Consensus 128 GLviiVGaTGSGKSTtmAaMi~y 150 (375)
T COG5008 128 GLVIIVGATGSGKSTTMAAMIGY 150 (375)
T ss_pred ceEEEECCCCCCchhhHHHHhcc
Confidence 58999999999999999987654
No 221
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=93.13 E-value=0.6 Score=53.33 Aligned_cols=28 Identities=21% Similarity=0.212 Sum_probs=23.7
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
..+|+|+||+|+||||.+..||..+..+
T Consensus 349 g~~i~l~GppG~GKTtl~~~ia~~l~~~ 376 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLGQSIAKATGRK 376 (784)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4589999999999999999999876543
No 222
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=93.10 E-value=0.06 Score=55.85 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++||||+||||.|--||-.+.
T Consensus 32 e~~~llGpsGsGKSTLLr~iaGl~~ 56 (362)
T TIGR03258 32 ELLALIGKSGCGKTTLLRAIAGFVK 56 (362)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999986543
No 223
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=93.00 E-value=0.034 Score=56.78 Aligned_cols=33 Identities=30% Similarity=0.329 Sum_probs=25.0
Q ss_pred hHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 405 ~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+|.+...+| .++.+||+||+||||++--|+-.+
T Consensus 25 ~vsl~i~~G--e~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 25 RISYSVKQG--EVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred eeEEEECCC--CEEEEECCCCChHHHHHHHHHcCC
Confidence 333333455 699999999999999988887654
No 224
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.97 E-value=0.12 Score=48.24 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=23.5
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
...++|.|+.|+|||..++.||..+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~ 73 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR 73 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence 468999999999999999999998876
No 225
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.96 E-value=0.24 Score=54.58 Aligned_cols=29 Identities=28% Similarity=0.540 Sum_probs=25.9
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+|.+|+|+|+-|+||||....||..|..
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 35789999999999999999999998864
No 226
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.94 E-value=0.069 Score=52.45 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-||-.+
T Consensus 43 e~~~i~G~nGsGKSTLl~~l~Gl~ 66 (265)
T PRK14252 43 QVTALIGPSGCGKSTFLRCFNRMH 66 (265)
T ss_pred cEEEEECCCCCCHHHHHHHHhccc
Confidence 699999999999999998887543
No 227
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=92.94 E-value=0.041 Score=57.94 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+-.|+-.+
T Consensus 55 ei~~LvG~NGsGKSTLLr~I~Gl~ 78 (400)
T PRK10070 55 EIFVIMGLSGSGKSTMVRLLNRLI 78 (400)
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 699999999999999999888654
No 228
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.88 E-value=0.21 Score=52.83 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..|+|+||+|+||||...-||..+
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Confidence 579999999999999998888765
No 229
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.81 E-value=0.063 Score=58.51 Aligned_cols=24 Identities=38% Similarity=0.332 Sum_probs=20.3
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.-.|++|||||+||||.|--|+--
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~ 371 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGE 371 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhh
Confidence 357999999999999999888543
No 230
>PLN03025 replication factor C subunit; Provisional
Probab=92.79 E-value=0.14 Score=51.89 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.5
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.++|.||.|+||||++--||..+.
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999998873
No 231
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.70 E-value=0.076 Score=53.53 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.++++||+||+||||.+.-||-.+
T Consensus 72 e~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 72 SVTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 699999999999999999998654
No 232
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.70 E-value=0.11 Score=54.77 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=23.9
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++..++|.||.|+||||.+-.||..+.
T Consensus 33 ~~~~~~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 33 AGRLSSMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34566899999999999999999987653
No 233
>PRK12377 putative replication protein; Provisional
Probab=92.70 E-value=0.1 Score=51.42 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=25.4
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
...++|.|++|+|||+.+.-||..|.++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999764
No 234
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.65 E-value=0.092 Score=47.04 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=22.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+|++.|+.|+||||.+..||..|
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 599999999999999999999876
No 235
>PLN03073 ABC transporter F family; Provisional
Probab=92.64 E-value=0.029 Score=63.21 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=20.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+|+++|+||+||||.+--|+-.+
T Consensus 536 e~i~LvG~NGsGKSTLLk~L~Gll 559 (718)
T PLN03073 536 SRIAMVGPNGIGKSTILKLISGEL 559 (718)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999998887543
No 236
>PRK07952 DNA replication protein DnaC; Validated
Probab=92.62 E-value=0.097 Score=51.50 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=24.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
..++|.|+.|+|||+.++.||.+|.+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~ 126 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR 126 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 479999999999999999999998764
No 237
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=92.59 E-value=0.14 Score=48.44 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=25.2
Q ss_pred CCeEEEEEeeC-CCChhhHHHHHHHHHHHhcC
Q 013364 414 KPYVVVFVGVN-GVGKSTNLAKVKLIILIDFG 444 (444)
Q Consensus 414 ~p~vI~fVGvN-GVGKTTTlAKLA~~l~~~~g 444 (444)
...+|+|+|+. ||||||+.+-||+.|-+.+|
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g 65 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYD 65 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcC
Confidence 34699999755 89999999999999876433
No 238
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.50 E-value=0.027 Score=61.22 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+..||-.+
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGLl 74 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGVT 74 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 699999999999999999888544
No 239
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.49 E-value=0.088 Score=56.56 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
-.|+|.||||+|||||+=.+-.++..
T Consensus 259 GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 259 GLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 48999999999999999877776643
No 240
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.47 E-value=0.087 Score=51.81 Aligned_cols=24 Identities=33% Similarity=0.492 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 35 EITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred CEEEEECCCCCCHHHHHHHHHccc
Confidence 699999999999999998887654
No 241
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=92.46 E-value=0.13 Score=52.90 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=27.7
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
..++++|+|+|--|+||||+.+.||++|.+.
T Consensus 28 ~~~~~ii~v~gkgG~GKSt~a~nLa~~la~~ 58 (329)
T cd02033 28 TKKTQIIAIYGKGGIGKSFTLANLSYMMAQQ 58 (329)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4467899999999999999999999999764
No 242
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=92.42 E-value=0.048 Score=55.64 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.++++||+||+||||.+--|+-.+
T Consensus 34 e~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 34 EIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CEEEEECCCCCCHHHHHHHHHccC
Confidence 699999999999999988887654
No 243
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.35 E-value=0.17 Score=52.16 Aligned_cols=30 Identities=30% Similarity=0.340 Sum_probs=25.4
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
+.|..+++.|+.|+||||++-.++..+...
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 456678999999999999999999877543
No 244
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.34 E-value=0.18 Score=50.23 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.4
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.++|.|+.|+||||.+-.||..+.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 479999999999999999998763
No 245
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=92.30 E-value=0.19 Score=53.13 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.0
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+..|+|+||+||||||.+--||..|
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhc
Confidence 3589999999999999998888765
No 246
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.30 E-value=0.1 Score=53.26 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..|+++|++|+||||++.-|+.++
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhh
Confidence 579999999999999999998775
No 247
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.26 E-value=0.05 Score=55.67 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=25.1
Q ss_pred hHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 405 ~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
++.....+| .+++|||+||+||||.+.-|+..+
T Consensus 100 ~is~~I~~G--e~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 100 DLNLDIKRN--KVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred eeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccc
Confidence 333333444 689999999999999999988654
No 248
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=92.22 E-value=0.056 Score=56.36 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+-.||-.+.
T Consensus 41 e~~~LlGpsGsGKSTLLr~IaGl~~ 65 (375)
T PRK09452 41 EFLTLLGPSGCGKTTVLRLIAGFET 65 (375)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5999999999999999999986543
No 249
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.22 E-value=0.1 Score=52.08 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=24.4
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
++.+.++|+|+||+||||.+.-||..+..
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 34578999999999999999999876643
No 250
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=92.18 E-value=0.094 Score=54.72 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 46 e~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 46 EIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 699999999999999999888544
No 251
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=92.16 E-value=0.1 Score=48.67 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
..|+++|.+||||||.+..|+.
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~ 63 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTG 63 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999988875
No 252
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.16 E-value=0.042 Score=59.29 Aligned_cols=39 Identities=26% Similarity=0.198 Sum_probs=27.2
Q ss_pred hhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 402 ~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
+|+++....++| ..|++||++|+||||.+.-|+.++.-.
T Consensus 350 vL~~isl~i~~G--~~vaIvG~SGsGKSTLl~lL~g~~~p~ 388 (529)
T TIGR02868 350 VLDGVSLDLPPG--ERVAILGPSGSGKSTLLMLLTGLLDPL 388 (529)
T ss_pred eeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 344444444444 689999999999999887777655433
No 253
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=92.09 E-value=0.23 Score=47.35 Aligned_cols=41 Identities=32% Similarity=0.396 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcCCCCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHH
Q 013364 383 QAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 383 ~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
+..|...+.+++.|.... ..+++|+|..|.||||-+.+|+-
T Consensus 34 ~~wl~~~Var~~~pg~k~--------------d~~lvl~G~QG~GKStf~~~L~~ 74 (198)
T PF05272_consen 34 RKWLVGAVARAYEPGCKN--------------DTVLVLVGKQGIGKSTFFRKLGP 74 (198)
T ss_pred HHHHHHHHHHHhCCCCcC--------------ceeeeEecCCcccHHHHHHHHhH
Confidence 667777788888774332 37999999999999999999863
No 254
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=92.08 E-value=0.061 Score=56.27 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+-.|+-.+.
T Consensus 51 ei~~I~G~nGsGKSTLlr~L~Gl~~ 75 (382)
T TIGR03415 51 EICVLMGLSGSGKSSLLRAVNGLNP 75 (382)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 6999999999999999999986543
No 255
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.04 E-value=0.38 Score=47.05 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=21.0
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.-.++|.||.|+||||..--||..+..+
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~ 77 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVN 77 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--
T ss_pred cceEEEECCCccchhHHHHHHHhccCCC
Confidence 4589999999999999888888766543
No 256
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=92.01 E-value=0.16 Score=48.46 Aligned_cols=27 Identities=19% Similarity=0.114 Sum_probs=23.4
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
+..++|+|+.|||||+.+..+|+.+..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999987643
No 257
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.00 E-value=0.18 Score=54.45 Aligned_cols=28 Identities=32% Similarity=0.520 Sum_probs=24.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
-|.-++|.||.||||||+.--||..|.-
T Consensus 34 i~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 34 IPQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred CCceEEEECCCCccHHHHHHHHHHHHcC
Confidence 3678999999999999998888887753
No 258
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=91.91 E-value=0.098 Score=56.21 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=17.0
Q ss_pred eEEEEEeeCCCChhhHHH
Q 013364 416 YVVVFVGVNGVGKSTNLA 433 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlA 433 (444)
.+|++||++|+||||.|.
T Consensus 33 Eiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 33 SLLFLCGSSGDGKSEILA 50 (504)
T ss_pred CEEEEECCCCCCHHHHHh
Confidence 699999999999999986
No 259
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.89 E-value=0.19 Score=54.55 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=24.9
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.|.-++|.||.||||||++--||.+|..
T Consensus 42 i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 42 LAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3678999999999999999999998853
No 260
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.86 E-value=0.21 Score=50.95 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=24.6
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
+.|..+++.||.|+||||++-.++..|.+
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34668999999999999999999887753
No 261
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.86 E-value=0.26 Score=53.48 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.|.+++||.|+||||||-=||.-|
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhh
Confidence 699999999999999999888644
No 262
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=91.86 E-value=0.13 Score=50.49 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++|+|++||||||.|-.|.-...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhh
Confidence 4899999999999999999876543
No 263
>PRK06835 DNA replication protein DnaC; Validated
Probab=91.82 E-value=0.13 Score=52.72 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=24.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
..++|+|++|+|||+.+..||..+..+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 579999999999999999999988754
No 264
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=91.80 E-value=0.039 Score=56.33 Aligned_cols=33 Identities=30% Similarity=0.332 Sum_probs=24.9
Q ss_pred hHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 405 ~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+|.....+| .++.+||+||+||||.+--|+-.+
T Consensus 33 ~vsl~i~~G--e~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 33 GVSFTLERG--KTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred eeEEEECCC--CEEEEECCCCCcHHHHHHHHHcCC
Confidence 333333444 699999999999999988887654
No 265
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=91.71 E-value=0.042 Score=60.90 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=20.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.++++||+||+||||.+--|+-.+
T Consensus 351 e~~~lvG~nGsGKSTLlk~i~Gl~ 374 (623)
T PRK10261 351 ETLSLVGESGSGKSTTGRALLRLV 374 (623)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 699999999999999988887544
No 266
>PLN02674 adenylate kinase
Probab=91.70 E-value=0.12 Score=50.89 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=22.4
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+..|+|+|+.|+||||..++||..|.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Confidence 34688999999999999999998664
No 267
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=91.61 E-value=0.17 Score=52.52 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=26.7
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
++.+|.|+|..|+||||.|.+|...|+++
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~ 232 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIAR 232 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999999999875
No 268
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=91.58 E-value=0.15 Score=53.70 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=24.3
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.....|+|+|..|+||||.+.+||..|
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999999876
No 269
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=91.56 E-value=0.065 Score=58.42 Aligned_cols=29 Identities=31% Similarity=0.271 Sum_probs=24.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHhcC
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILIDFG 444 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~~g 444 (444)
..+++||++|+||||.+.-|+.+|.-+.|
T Consensus 356 e~vaiVG~sGsGKSTl~~LL~r~~~~~~G 384 (567)
T COG1132 356 EKVAIVGPSGSGKSTLIKLLLRLYDPTSG 384 (567)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 58999999999999988888887765443
No 270
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.54 E-value=0.11 Score=50.53 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.|.+|+||.|.||||.|..|-.
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHh
Confidence 6999999999999999988754
No 271
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=91.46 E-value=0.054 Score=60.43 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.++++||+||+||||.+.-||-.+.
T Consensus 479 e~~~IvG~nGsGKSTLl~lL~Gl~~ 503 (659)
T TIGR00954 479 NHLLICGPNGCGKSSLFRILGELWP 503 (659)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999998887653
No 272
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=91.44 E-value=0.12 Score=53.36 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=23.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.|.-|+|+||.|+||||.+..||..+.
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 467799999999999999998887553
No 273
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=91.42 E-value=0.17 Score=49.93 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=25.4
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
++..++|.|+.|||||..++-||..+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 567999999999999999999999998
No 274
>PLN02348 phosphoribulokinase
Probab=91.41 E-value=0.21 Score=52.48 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=27.2
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.++|.+|.+.|+.|+||||....|+..|..
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 457899999999999999999999998864
No 275
>PRK13409 putative ATPase RIL; Provisional
Probab=91.34 E-value=0.082 Score=58.36 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-||-.+
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl~ 389 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGVL 389 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999998887544
No 276
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=91.33 E-value=0.25 Score=50.75 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=22.1
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.|++.|+.|+||||.+..||..|.
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~ 89 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLN 89 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHC
Confidence 599999999999999999999774
No 277
>COG1084 Predicted GTPase [General function prediction only]
Probab=91.33 E-value=0.58 Score=47.95 Aligned_cols=103 Identities=21% Similarity=0.244 Sum_probs=54.0
Q ss_pred hchHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHHhcccccc--cccchhHHHHHHHHHHHHHHcCC-CCcchhh
Q 013364 333 ADLEPALKALKDRLMTKN------VAEEIAEKLCESVAASLEGKKLA--SFTRISSIVQAAMEEALVRILTP-RRSIDIL 403 (444)
Q Consensus 333 edl~~~l~~l~~~Li~kd------Va~~ia~~l~~~v~~~l~g~k~~--~~~~~~~~v~~~l~~~L~~iL~p-~~~~d~l 403 (444)
++|+|+..+|-+.|...| .+...|..+++.|..+....-.. +. .-...++..-..-+..++.. ...+..|
T Consensus 73 d~LhpFY~eLidvl~d~d~~k~sLs~v~~A~~~i~~l~~eYi~~lk~a~~~-~~~~~lrR~a~GR~aSiik~i~~~L~fL 151 (346)
T COG1084 73 DDLHPFYRELIDVLVDIDHLKISLSAVSWASKIIEKLAREYIRLLKAAKDP-KEANQLRRQAFGRVASIIKKIDDDLEFL 151 (346)
T ss_pred cccChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 466777777766665432 33556677777776654432111 11 11222333333333333321 1223444
Q ss_pred HhHHHhhh-----cCCCeEEEEEeeCCCChhhHHHHHH
Q 013364 404 RDVHAAKE-----QRKPYVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 404 ~~i~~~~~-----~~~p~vI~fVGvNGVGKTTTlAKLA 436 (444)
+.+..... ......|+++|..-|||||.++||.
T Consensus 152 ~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT 189 (346)
T COG1084 152 RKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLT 189 (346)
T ss_pred HHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHh
Confidence 44332221 1123489999999999999999985
No 278
>PTZ00202 tuzin; Provisional
Probab=91.31 E-value=0.17 Score=54.06 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=22.8
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.|.+++++|++|+||||.+-.++.++
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcC
Confidence 46799999999999999999888654
No 279
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=91.24 E-value=0.07 Score=58.30 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=22.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
..+++||+||+||||.+--|+-.+.-.
T Consensus 342 ~~~~ivG~sGsGKSTLl~ll~g~~~p~ 368 (569)
T PRK10789 342 QMLGICGPTGSGKSTLLSLIQRHFDVS 368 (569)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 589999999999999888887765433
No 280
>PTZ00035 Rad51 protein; Provisional
Probab=91.24 E-value=0.66 Score=47.77 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=47.8
Q ss_pred HhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhHHHhhhcCC--CeEEEEEeeC
Q 013364 347 MTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRK--PYVVVFVGVN 424 (444)
Q Consensus 347 i~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~~--p~vI~fVGvN 424 (444)
-.+++...-|++|++.++..+.. .|.+.. .+.+. +..+.++-+....+| .+ ...|- -.++.++|++
T Consensus 60 ~~~gis~~~~~~i~~~~~~~~~~----~~~ta~-~~~~~-~~~~~~isTG~~~LD---~l---LgGGi~~G~iteI~G~~ 127 (337)
T PTZ00035 60 NIKGISEAKVEKIKEAASKLVPM----GFISAT-EYLEA-RKNIIRITTGSTQLD---KL---LGGGIETGSITELFGEF 127 (337)
T ss_pred HhhCCCHHHHHHHHHHHHHhccc----CCCCHH-HHHHh-hccCccccCCcHHHH---HH---hCCCCCCCeEEEEECCC
Confidence 34899999999999998876532 232222 22211 111222222222233 22 12232 3689999999
Q ss_pred CCChhhHHHHHHHHH
Q 013364 425 GVGKSTNLAKVKLII 439 (444)
Q Consensus 425 GVGKTTTlAKLA~~l 439 (444)
|+||||.+-.||...
T Consensus 128 GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 128 RTGKTQLCHTLCVTC 142 (337)
T ss_pred CCchhHHHHHHHHHh
Confidence 999999998887654
No 281
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.16 E-value=0.28 Score=50.78 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=24.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
-|..++|.||.|+||||++--+|..|.
T Consensus 37 ~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 367899999999999999999998874
No 282
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.11 E-value=0.29 Score=53.06 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=25.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
-|..++|+||.|+||||++-.||.+|..
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4678999999999999999999998864
No 283
>PRK08181 transposase; Validated
Probab=91.11 E-value=0.21 Score=49.81 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.6
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.+.++|+||.|+|||..+.-||..+.++
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~ 133 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIEN 133 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 4679999999999999999999887654
No 284
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=91.04 E-value=0.058 Score=58.65 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..+++||+||+||||.+.-|+-.+.
T Consensus 350 ~~~aivG~sGsGKSTL~~ll~g~~~ 374 (547)
T PRK10522 350 ELLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999998887776554
No 285
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=91.04 E-value=0.083 Score=59.42 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=27.3
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
+.++....++| .+|++||+||+||||.+.-|+.++.-.
T Consensus 497 L~~isl~i~~G--e~vaIvG~SGsGKSTLl~lL~gl~~p~ 534 (711)
T TIGR00958 497 LKGLTFTLHPG--EVVALVGPSGSGKSTVAALLQNLYQPT 534 (711)
T ss_pred ccCceEEEcCC--CEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 33343333344 589999999999999998888776543
No 286
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.01 E-value=0.14 Score=57.02 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=26.0
Q ss_pred hhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 402 ~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
++.++....++| .++++|||+|.||||-++-|=.+|
T Consensus 483 Vlk~lsfti~pG--e~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 483 VLKNLSFTIRPG--EVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred hhcCceeeeCCC--CEEEEECCCCCCHHHHHHHHHHhc
Confidence 444444444444 599999999999999888776655
No 287
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=90.93 E-value=0.11 Score=56.23 Aligned_cols=22 Identities=45% Similarity=0.531 Sum_probs=16.7
Q ss_pred EEEEeeCCCChhhHHHHHHHHH
Q 013364 418 VVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 418 I~fVGvNGVGKTTTlAKLA~~l 439 (444)
|++|||||+||||.|--+..-+
T Consensus 419 vAlVGPNG~GKsTLlKl~~gdl 440 (614)
T KOG0927|consen 419 VALVGPNGAGKSTLLKLITGDL 440 (614)
T ss_pred eeEecCCCCchhhhHHHHhhcc
Confidence 4789999999999875544433
No 288
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=90.89 E-value=0.19 Score=50.36 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=22.9
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.|..++|.|+.|+||||.+-.||..+
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 47788889999999999999998765
No 289
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.85 E-value=0.27 Score=52.96 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=24.1
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
|..++|+||.|+||||++--||.+|..
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 567999999999999999999988754
No 290
>PRK08084 DNA replication initiation factor; Provisional
Probab=90.85 E-value=0.35 Score=46.94 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=22.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
..+.|+||.|+|||+.+.-+|+.+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999988887664
No 291
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=90.83 E-value=0.53 Score=47.34 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=23.1
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..++.++|++|+||||.+-.+|+-..
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~ 120 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQ 120 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 47999999999999999999987654
No 292
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.79 E-value=0.19 Score=54.00 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=24.3
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
-|..++|.||.|+||||++--||..+..
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3578999999999999999999988753
No 293
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.71 E-value=0.2 Score=50.96 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=23.2
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.|..++|.||.|+||||.+--+|..+.
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhC
Confidence 356889999999999999999988763
No 294
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=90.69 E-value=0.1 Score=63.28 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=29.3
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhcC
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDFG 444 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~g 444 (444)
|.++.....+| .++++||+||+||||.+.-|+.+|.-..|
T Consensus 401 L~~isl~i~~G--e~vaIvG~SGsGKSTLl~lL~gl~~p~~G 440 (1466)
T PTZ00265 401 YKDLNFTLTEG--KTYAFVGESGCGKSTILKLIERLYDPTEG 440 (1466)
T ss_pred eccceEEEcCC--CEEEEECCCCCCHHHHHHHHHHhccCCCC
Confidence 44443333344 58999999999999999999988764433
No 295
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=90.62 E-value=0.37 Score=54.11 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=24.7
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.|..++|+|+.||||||++--||.+|.-
T Consensus 37 l~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 37 LHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 3678999999999999999999998753
No 296
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.62 E-value=0.29 Score=54.69 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=24.1
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
|..++|+||.||||||++--||..|.-
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 678999999999999999999988753
No 297
>PRK06893 DNA replication initiation factor; Validated
Probab=90.61 E-value=0.24 Score=47.87 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=23.2
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.+.|+|+.|+|||+.+.-+|..+.++
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 78999999999999999999887554
No 298
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=90.61 E-value=0.08 Score=57.97 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=27.0
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
|.++....++| ..+++||++|+||||.+.-|+..+.-.
T Consensus 356 l~~i~~~i~~G--~~~aivG~sGsGKSTL~~ll~g~~~p~ 393 (574)
T PRK11160 356 LKGLSLQIKAG--EKVALLGRTGCGKSTLLQLLTRAWDPQ 393 (574)
T ss_pred eecceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 33443333343 589999999999999998888766433
No 299
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.59 E-value=0.11 Score=49.03 Aligned_cols=37 Identities=35% Similarity=0.422 Sum_probs=27.5
Q ss_pred cchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHH
Q 013364 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 399 ~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
++.||+.+.....++ ..|.+||+.|+||||.++-||-
T Consensus 22 ~l~IL~~V~L~v~~G--e~vaiVG~SGSGKSTLl~vlAG 58 (228)
T COG4181 22 ELSILKGVELVVKRG--ETVAIVGPSGSGKSTLLAVLAG 58 (228)
T ss_pred ceeEeecceEEecCC--ceEEEEcCCCCcHHhHHHHHhc
Confidence 345555554444444 5899999999999999998873
No 300
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=90.53 E-value=0.2 Score=51.24 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=22.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..|+|+|+.|+||||.+..||.+|
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~ 186 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVF 186 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 489999999999999999999875
No 301
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=90.45 E-value=0.31 Score=55.20 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=24.2
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
+..++|+|+.||||||++--||.+|.-
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 678899999999999999999998853
No 302
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=90.44 E-value=0.46 Score=50.08 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.7
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.|.-|+|.||+|+||||.+-.||..+
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc
Confidence 57889999999999999988888754
No 303
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.38 E-value=0.31 Score=52.99 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=24.7
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
-|..++|.||.||||||++--||.+|.-
T Consensus 37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 37 LHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4678999999999999999999988853
No 304
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=90.37 E-value=0.093 Score=53.67 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=24.7
Q ss_pred hHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 405 ~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
++.....+| .++.+||+||+||||.+--|+-.+
T Consensus 34 ~vsl~i~~G--e~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 34 DLNFSLRAG--ETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred eeEEEEcCC--CEEEEECCCCchHHHHHHHHHcCC
Confidence 333333444 699999999999999988887554
No 305
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.34 E-value=0.34 Score=54.09 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=24.9
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.|..++|.|+.|+||||+.--||..|..
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4678999999999999999999998864
No 306
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=90.31 E-value=0.12 Score=52.94 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.++++||+||+||||.+--|+-.+
T Consensus 48 e~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 48 ETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 699999999999999988887654
No 307
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=90.31 E-value=0.24 Score=47.80 Aligned_cols=27 Identities=37% Similarity=0.472 Sum_probs=23.2
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..|.+|++||++|+||||.+-.|+..+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~ 63 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNY 63 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 468899999999999999998777653
No 308
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.24 E-value=0.27 Score=56.53 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=24.7
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
-|..++|+|+.|+||||++-.||..|..
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 3677899999999999999999998854
No 309
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=90.24 E-value=0.1 Score=58.40 Aligned_cols=38 Identities=24% Similarity=0.155 Sum_probs=26.5
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
++++....++| ..|++||++|+||||.+--|+-.|.-.
T Consensus 495 L~~isl~i~~G--e~vaIvG~sGsGKSTLlklL~gl~~p~ 532 (710)
T TIGR03796 495 IENFSLTLQPG--QRVALVGGSGSGKSTIAKLVAGLYQPW 532 (710)
T ss_pred ccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 44443333344 589999999999999887777665433
No 310
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=90.23 E-value=0.19 Score=53.58 Aligned_cols=27 Identities=26% Similarity=0.237 Sum_probs=23.2
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.|.-|+|+||+|+||||.+-.||..+.
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 467899999999999999999887653
No 311
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=90.19 E-value=0.092 Score=57.69 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
..+++||+||+||||.+.-|+-++.-
T Consensus 362 ~~~~ivG~sGsGKSTL~~ll~g~~~~ 387 (585)
T TIGR01192 362 QTVAIVGPTGAGKTTLINLLQRVYDP 387 (585)
T ss_pred CEEEEECCCCCCHHHHHHHHccCCCC
Confidence 68999999999999999888776543
No 312
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=90.16 E-value=0.22 Score=54.09 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.8
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+|.+|++.||+|+||||..-.||..|
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l 308 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKL 308 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56899999999999999999999766
No 313
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=90.15 E-value=0.15 Score=54.42 Aligned_cols=29 Identities=38% Similarity=0.477 Sum_probs=25.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHhcC
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILIDFG 444 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~~g 444 (444)
+|+.++|+||.||||.+--||--++=|.|
T Consensus 101 ~V~GilG~NGiGKsTalkILaGel~PNLG 129 (591)
T COG1245 101 KVVGILGPNGIGKSTALKILAGELKPNLG 129 (591)
T ss_pred cEEEEEcCCCccHHHHHHHHhCccccCCC
Confidence 69999999999999999988877666554
No 314
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.12 E-value=0.31 Score=51.78 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=25.3
Q ss_pred hcCCCe--EEEEEeeCCCChhhHHHHHHHHHH
Q 013364 411 EQRKPY--VVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 411 ~~~~p~--vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..|+|+ -.++-||.|.||||.||-||.+|.
T Consensus 229 rvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 229 RVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred hcCcchhccceeeCCCCCCHHHHHHHHHhhcC
Confidence 346664 489999999999999999999874
No 315
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=90.11 E-value=0.31 Score=55.18 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=23.3
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
++...++|.||.|+||||.+..||..+.
T Consensus 50 ~~~~slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445789999999999999999987664
No 316
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=90.02 E-value=0.41 Score=48.55 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=24.2
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.|..++|.||.|+||||++-.||..|.
T Consensus 35 ~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 35 IAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 367899999999999999999998875
No 317
>PLN03140 ABC transporter G family member; Provisional
Probab=90.01 E-value=0.16 Score=61.59 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=30.3
Q ss_pred chhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 400 ~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..+|+++.....+| .+++++||||+||||.|--||-.+.
T Consensus 178 ~~IL~~vs~~i~~G--e~~~llGpnGSGKSTLLk~LaG~l~ 216 (1470)
T PLN03140 178 LTILKDASGIIKPS--RMTLLLGPPSSGKTTLLLALAGKLD 216 (1470)
T ss_pred ceeccCCeEEEeCC--eEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 45666665544455 6999999999999999999987654
No 318
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=89.99 E-value=0.14 Score=55.94 Aligned_cols=26 Identities=35% Similarity=0.335 Sum_probs=21.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
..+++||+||+||||.+--|+-.+.-
T Consensus 370 ~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 370 KTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCC
Confidence 57999999999999988888776543
No 319
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=89.99 E-value=0.17 Score=52.23 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..|+|+|++|+||||++.-|+.++.
T Consensus 179 ~~ili~G~tGsGKTTll~al~~~i~ 203 (340)
T TIGR03819 179 LAFLISGGTGSGKTTLLSALLALVA 203 (340)
T ss_pred CeEEEECCCCCCHHHHHHHHHccCC
Confidence 5999999999999999998887654
No 320
>PLN03211 ABC transporter G-25; Provisional
Probab=89.99 E-value=0.12 Score=57.85 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++||||+||||.+--||-.+.
T Consensus 95 e~~aI~GpnGaGKSTLL~iLaG~~~ 119 (659)
T PLN03211 95 EILAVLGPSGSGKSTLLNALAGRIQ 119 (659)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6999999999999999999886543
No 321
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.94 E-value=0.15 Score=59.92 Aligned_cols=46 Identities=28% Similarity=0.333 Sum_probs=34.6
Q ss_pred CCCc-chhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 396 PRRS-IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 396 p~~~-~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
|.++ +.+|+.+....+.| ..|++||++|+||||.|.-|+.+|--..
T Consensus 361 PsRpdv~Il~g~sl~i~~G--~~valVG~SGsGKST~i~LL~RfydP~~ 407 (1228)
T KOG0055|consen 361 PSRPDVKILKGVSLKIPSG--QTVALVGPSGSGKSTLIQLLARFYDPTS 407 (1228)
T ss_pred CCCCcchhhCCeEEEeCCC--CEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 4443 55666665555555 6899999999999999999999875443
No 322
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=89.84 E-value=0.11 Score=58.23 Aligned_cols=27 Identities=30% Similarity=0.209 Sum_probs=21.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
..|++||+||+||||.+.-|+-.|.-.
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~gl~~p~ 518 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLGLYQPT 518 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 589999999999999887777655433
No 323
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=89.83 E-value=0.36 Score=53.45 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=24.9
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.|.-++|.||.||||||+.--||..|.-
T Consensus 45 i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 45 IAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 3678999999999999999999998853
No 324
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=89.82 E-value=0.5 Score=48.10 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++|=||+|.|||+|+--+|+-|
T Consensus 58 p~~LFyGPpGTGKTStalafar~L 81 (346)
T KOG0989|consen 58 PHYLFYGPPGTGKTSTALAFARAL 81 (346)
T ss_pred ceEEeeCCCCCcHhHHHHHHHHHh
Confidence 389999999999999998888755
No 325
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=89.79 E-value=0.11 Score=58.10 Aligned_cols=27 Identities=33% Similarity=0.271 Sum_probs=22.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
..|++||++|+||||.+.-|+-++.-.
T Consensus 480 e~vaIvG~sGsGKSTLlklL~gl~~p~ 506 (686)
T TIGR03797 480 EFVAIVGPSGSGKSTLLRLLLGFETPE 506 (686)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 589999999999999888777665433
No 326
>PRK08939 primosomal protein DnaI; Reviewed
Probab=89.69 E-value=0.32 Score=49.37 Aligned_cols=28 Identities=29% Similarity=0.182 Sum_probs=25.0
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
+.-+.|.|+.|||||..++.||..|.++
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~ 183 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKK 183 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999998753
No 327
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=89.68 E-value=0.13 Score=56.01 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=27.3
Q ss_pred hhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 402 ~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
+++++.....+| ..|+++|+||+||||.+--|+-++.-
T Consensus 355 iL~~inl~i~~G--e~i~IvG~sGsGKSTLlklL~gl~~p 392 (576)
T TIGR02204 355 ALDGLNLTVRPG--ETVALVGPSGAGKSTLFQLLLRFYDP 392 (576)
T ss_pred cccceeEEecCC--CEEEEECCCCCCHHHHHHHHHhccCC
Confidence 344444434444 58999999999999988888876643
No 328
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.67 E-value=0.49 Score=52.74 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++|.||+|+||||++..||..+.
T Consensus 111 ~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999997654
No 329
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=89.64 E-value=0.43 Score=49.45 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=25.6
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.|.-++|.|+.|+||||.+-.+|.+|..
T Consensus 44 l~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 44 LHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 3788999999999999999999999875
No 330
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=89.63 E-value=0.49 Score=47.94 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.5
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
++..|+|+|+.|+||||....||..|
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999988654
No 331
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=89.63 E-value=0.097 Score=57.22 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..+++||++|+||||.+.-|+.++
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999888887766
No 332
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=89.59 E-value=0.13 Score=55.88 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=22.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
..|+++|+||+||||.+.-|+-.+.-.
T Consensus 359 ~~v~IvG~sGsGKSTLl~lL~gl~~~~ 385 (571)
T TIGR02203 359 ETVALVGRSGSGKSTLVNLIPRFYEPD 385 (571)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 589999999999999998888766543
No 333
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=89.52 E-value=0.11 Score=56.94 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=26.8
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
+.++.....+| ..|++||++|+||||.+--|+.++.-.
T Consensus 351 L~~inl~i~~G--~~v~IvG~sGsGKSTLl~lL~gl~~p~ 388 (588)
T PRK13657 351 VEDVSFEAKPG--QTVAIVGPTGAGKSTLINLLQRVFDPQ 388 (588)
T ss_pred ecceeEEECCC--CEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 44444333344 589999999999999888777666443
No 334
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=89.49 E-value=0.087 Score=65.68 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.++.++||||+||||++.-|+-.+.
T Consensus 1966 Ei~gLLG~NGAGKTTLlkmL~Gll~ 1990 (2272)
T TIGR01257 1966 ECFGLLGVNGAGKTTTFKMLTGDTT 1990 (2272)
T ss_pred cEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5899999999999999999886543
No 335
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=89.36 E-value=0.28 Score=51.32 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=23.3
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.|.-|+|+||.|+|||+.+..||..+.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhC
Confidence 467899999999999999999887653
No 336
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=89.34 E-value=0.13 Score=55.52 Aligned_cols=25 Identities=36% Similarity=0.336 Sum_probs=21.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..+++||++|+||||.+--|+-++.
T Consensus 349 ~~~~ivG~sGsGKSTL~~ll~g~~~ 373 (529)
T TIGR02857 349 ERVALVGPSGAGKSTLLNLLLGFVD 373 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999998888876654
No 337
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=89.33 E-value=0.13 Score=49.41 Aligned_cols=18 Identities=39% Similarity=0.634 Sum_probs=15.0
Q ss_pred eEEEEEeeCCCChhhHHH
Q 013364 416 YVVVFVGVNGVGKSTNLA 433 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlA 433 (444)
-.=+++||||.||||.+-
T Consensus 32 elr~lIGpNGAGKTT~mD 49 (249)
T COG4674 32 ELRVLIGPNGAGKTTLMD 49 (249)
T ss_pred eEEEEECCCCCCceeeee
Confidence 466789999999999753
No 338
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.27 E-value=0.25 Score=46.77 Aligned_cols=47 Identities=28% Similarity=0.297 Sum_probs=32.4
Q ss_pred HHHHcCCCCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 390 LVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 390 L~~iL~p~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
|.+.+.|...- +++.+..-+| .|..+||-.|+||||.|++|+..|.-
T Consensus 12 lsk~Yg~~~gc---~~vsF~l~PG--eVLgiVGESGSGKtTLL~~is~rl~p 58 (258)
T COG4107 12 LSKLYGPGKGC---RDVSFDLYPG--EVLGIVGESGSGKTTLLKCISGRLTP 58 (258)
T ss_pred hhhhhCCCcCc---cccceeecCC--cEEEEEecCCCcHHhHHHHHhcccCC
Confidence 56666654332 1233333344 59999999999999999999987643
No 339
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.21 E-value=0.37 Score=53.24 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=24.3
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
-|..++|.||.|+||||++--||..|.
T Consensus 34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 34 INHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 367899999999999999999998876
No 340
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=89.18 E-value=0.14 Score=55.50 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=21.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..+++||+||+||||.+.-|+-++.
T Consensus 345 ~~~~ivG~sGsGKSTL~~ll~g~~~ 369 (544)
T TIGR01842 345 EALAIIGPSGSGKSTLARLIVGIWP 369 (544)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999998888876654
No 341
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=89.17 E-value=0.12 Score=57.81 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=21.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..|++||++|+||||.+.-|+..+.
T Consensus 501 ~~vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 501 SKTTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 5899999999999998877776654
No 342
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=89.13 E-value=0.41 Score=51.58 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=22.7
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.|.-|+|.||.|+||||.+..||..+
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 46779999999999999999998754
No 343
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=89.08 E-value=0.11 Score=56.69 Aligned_cols=26 Identities=35% Similarity=0.339 Sum_probs=22.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.++++||+||+||||.+--|+.++.-
T Consensus 369 ~~~aivG~sGsGKSTl~~ll~g~~~p 394 (555)
T TIGR01194 369 DIVFIVGENGCGKSTLAKLFCGLYIP 394 (555)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 58999999999999998888876543
No 344
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=89.08 E-value=0.31 Score=53.13 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=23.3
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
..+|.+|+|||+.|+||||....++.
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~ 391 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQ 391 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999988875
No 345
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.92 E-value=0.55 Score=49.21 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=24.2
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
-|..++|.||.||||||..--+|.+|.-
T Consensus 37 ~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 37 VGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3667999999999999999999988753
No 346
>PRK08727 hypothetical protein; Validated
Probab=88.90 E-value=0.36 Score=46.79 Aligned_cols=27 Identities=15% Similarity=0.049 Sum_probs=23.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.-|+|+|+.|+|||+.+.-+|+.+.++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 459999999999999999999887654
No 347
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.84 E-value=0.44 Score=52.25 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=24.6
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.|..++|.||-||||||.+--||.+|..
T Consensus 37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 37 VHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3677999999999999999999998853
No 348
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=88.79 E-value=0.32 Score=43.00 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=18.3
Q ss_pred EEEEEeeCCCChhhHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA 436 (444)
.++|+|..||||||.+-.|+
T Consensus 85 ~~~~~G~~~vGKstlin~l~ 104 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALV 104 (141)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 79999999999999988775
No 349
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=88.76 E-value=0.44 Score=52.74 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=25.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.|..++|.||.|+||||.+--+|.+|..
T Consensus 37 l~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 37 LTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4678999999999999999999999853
No 350
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=88.54 E-value=0.46 Score=46.86 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=24.2
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
..++++.|++|+||||.+..+|+...++
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~ 63 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR 63 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 4799999999999999999998876543
No 351
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=88.52 E-value=0.37 Score=53.73 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=23.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.++++.||.|+|||||++.+...+.++
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~ 200 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVKR 200 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 367799999999999999998877653
No 352
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.50 E-value=0.63 Score=51.31 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=24.7
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
-|..++|.||.|+||||++-.||.+|.-
T Consensus 37 ~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 37 VAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 3678899999999999999999998753
No 353
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=88.49 E-value=4.3 Score=42.84 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=24.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
..|++.|.+|+||||.+.-+|+.+..++
T Consensus 196 ~l~vi~g~pg~GKT~~~l~~a~~~a~~~ 223 (434)
T TIGR00665 196 DLIILAARPSMGKTAFALNIAENAAIKE 223 (434)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhC
Confidence 5899999999999999999998875543
No 354
>CHL00195 ycf46 Ycf46; Provisional
Probab=88.40 E-value=2.3 Score=46.09 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.1
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.|.-|+|+||.|+|||+++-.||..+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 47889999999999999998888765
No 355
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.32 E-value=0.49 Score=52.61 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=24.8
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.|..++|.|+.||||||++--||..|.-
T Consensus 37 l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 37 LHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4678999999999999999999988863
No 356
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=88.30 E-value=0.35 Score=47.68 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.1
Q ss_pred CCeEEEEEeeCCCChhhHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA 436 (444)
.+..|+|||.+||||||++--|.
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLl 52 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIF 52 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHh
Confidence 46799999999999999987664
No 357
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=88.27 E-value=0.44 Score=51.89 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=25.3
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
..|.++++|||.|.||||.|.-|..++.+
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk 95 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTK 95 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHH
Confidence 35788889999999999999999888764
No 358
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=88.16 E-value=0.54 Score=49.02 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=26.4
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.++|..+++.|++|+|||+++-.++.-+...
T Consensus 39 ~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 39 GERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred CCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 4567779999999999999999999887654
No 359
>PRK01889 GTPase RsgA; Reviewed
Probab=88.13 E-value=0.46 Score=49.19 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=21.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++|||.+||||||.+..|+-.+.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4899999999999999999886554
No 360
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.08 E-value=0.52 Score=51.43 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.9
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
-|..++|.||.|+||||.+--||..|.
T Consensus 37 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 37 LHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 367789999999999999999998875
No 361
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=88.08 E-value=0.39 Score=50.70 Aligned_cols=29 Identities=24% Similarity=0.182 Sum_probs=25.5
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
+-..+++||+.|+||||.+..|+..+.++
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 34799999999999999999999988766
No 362
>PRK08116 hypothetical protein; Validated
Probab=88.07 E-value=0.45 Score=47.34 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=24.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.-++|.|+.|+|||..+.-||..|.++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 358999999999999999999999765
No 363
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=88.07 E-value=0.36 Score=51.60 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=22.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..|+|+|+.|+||||.+-.||+.+.
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhc
Confidence 5788899999999999999998874
No 364
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=88.04 E-value=0.19 Score=56.20 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=21.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
..+++||+||+||||.+--|+-.+.-
T Consensus 484 ~~vaivG~sGsGKSTL~~ll~g~~~p 509 (694)
T TIGR01846 484 EFIGIVGPSGSGKSTLTKLLQRLYTP 509 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 58999999999999988877765543
No 365
>CHL00095 clpC Clp protease ATP binding subunit
Probab=88.02 E-value=0.5 Score=54.25 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=23.8
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+..++++|+.|||||+.+-.||..+..
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457789999999999999999998753
No 366
>PLN02772 guanylate kinase
Probab=87.92 E-value=0.36 Score=50.72 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.5
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
...|+|+||.||||+|.+.+|...+
T Consensus 135 ~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 135 EKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CcEEEEECCCCCCHHHHHHHHhhhc
Confidence 4689999999999999999887644
No 367
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=87.88 E-value=0.3 Score=52.00 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=21.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..+.|+|+||+||||++.-|+.++
T Consensus 156 Q~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 156 QRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred eEEEEECCCCCCccHHHHHHhccc
Confidence 689999999999999998888654
No 368
>PRK12289 GTPase RsgA; Reviewed
Probab=87.87 E-value=0.36 Score=50.04 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.+++|+|+.||||||.|-.|.-
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~ 194 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIP 194 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcC
Confidence 4789999999999999988763
No 369
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.87 E-value=0.56 Score=51.80 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=24.2
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+..++|.|+.|+||||.+-.||.+|.
T Consensus 37 i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 37 VAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357889999999999999999999885
No 370
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=87.85 E-value=0.49 Score=49.62 Aligned_cols=31 Identities=32% Similarity=0.222 Sum_probs=27.4
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.+.+-+||+||+.++||||..+=||+.|.++
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~r 100 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLAR 100 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhc
Confidence 3467899999999999999999999988764
No 371
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=87.79 E-value=0.29 Score=53.01 Aligned_cols=39 Identities=26% Similarity=0.201 Sum_probs=28.3
Q ss_pred hhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 402 ~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
+|.++.....+| ..|+++|.+|+||||.+.-|+..+.-+
T Consensus 353 ~L~~~~l~l~~G--EkvAIlG~SGsGKSTllqLl~~~~~~~ 391 (573)
T COG4987 353 ALKNFNLTLAQG--EKVAILGRSGSGKSTLLQLLAGAWDPQ 391 (573)
T ss_pred hhhccceeecCC--CeEEEECCCCCCHHHHHHHHHhccCCC
Confidence 444444444444 579999999999999999998655433
No 372
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=87.70 E-value=0.14 Score=57.15 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..++++|+||+||||.+-.||-.+
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~Gl~ 58 (648)
T PRK10535 35 EMVAIVGASGSGKSTLMNILGCLD 58 (648)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 699999999999999998888654
No 373
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=87.66 E-value=0.49 Score=44.38 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=21.6
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
-++++|.+|+|||+.+.-|+..|...
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~ 65 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALT 65 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHH
Confidence 79999999999999999998888764
No 374
>PRK12288 GTPase RsgA; Reviewed
Probab=87.64 E-value=0.29 Score=50.59 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=19.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.+++|||+.||||||.|-.|.-.
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccc
Confidence 36899999999999999887643
No 375
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=87.59 E-value=0.61 Score=52.08 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=25.3
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
-|..++|.|+-||||||++--||..|...
T Consensus 37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 37 LHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 36678999999999999999999988653
No 376
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=87.50 E-value=1.8 Score=44.83 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=59.1
Q ss_pred HHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCC
Q 013364 319 SMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRR 398 (444)
Q Consensus 319 ~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~ 398 (444)
..+++|.....-|-++|- .-.-++..--+++...-|.+|++.++..+.. .|.+. ..+...- ....+|-+-..
T Consensus 42 ~~~~kL~~~g~~tv~~~~--~~~~~~L~~~~g~s~~~~~ki~~~a~~~~~~----~~~ta-~~~~~~~-~~~~~isTG~~ 113 (344)
T PLN03187 42 GDVKKLQDAGIYTCNGLM--MHTKKNLTGIKGLSEAKVDKICEAAEKLLNQ----GFITG-SDALLKR-KSVVRITTGSQ 113 (344)
T ss_pred HHHHHHHHcCCCcHHHHH--hCCHHHHHHhcCCCHHHHHHHHHHHHHhhcc----cCCcH-HHHHhhh-ccCceecCCcH
Confidence 345555544444555442 1112222334899999999999998887542 23221 2222211 11122222222
Q ss_pred cchhhHhHHHhhhcCCC--eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 399 SIDILRDVHAAKEQRKP--YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 399 ~~d~l~~i~~~~~~~~p--~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+|- + ...|-| .++.|+|+.|+||||.+-.||....
T Consensus 114 ~LD~---l---LgGGi~~G~ItEI~G~~GsGKTql~lqlav~~q 151 (344)
T PLN03187 114 ALDE---L---LGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQ 151 (344)
T ss_pred hHHh---h---cCCCCCCCeEEEEecCCCCChhHHHHHHHHHHh
Confidence 3332 2 122322 6899999999999999988886543
No 377
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=87.39 E-value=0.87 Score=40.65 Aligned_cols=24 Identities=38% Similarity=0.313 Sum_probs=20.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.+..+++||.+||||||.+-.|..
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 345679999999999999988763
No 378
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.37 E-value=1.1 Score=48.04 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=24.9
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
-|..++|.|+.|+||||.+-.+|.+|..
T Consensus 38 i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 38 AAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3678999999999999999999998853
No 379
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=87.35 E-value=0.39 Score=51.33 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
-||.++||||.||||.+--||--++
T Consensus 368 EvigilGpNgiGKTTFvk~LAG~ik 392 (591)
T COG1245 368 EVIGILGPNGIGKTTFVKLLAGVIK 392 (591)
T ss_pred eEEEEECCCCcchHHHHHHHhcccc
Confidence 5999999999999999988875443
No 380
>PRK05642 DNA replication initiation factor; Validated
Probab=87.33 E-value=0.55 Score=45.55 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=22.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
+.++++|+.|+|||..+.-+|+.+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~ 71 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQ 71 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999887654
No 381
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.31 E-value=0.37 Score=55.19 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.8
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.|+-=|++||||+||||.++-||--|
T Consensus 41 gpsLNmIiGpNGSGKSSiVcAIcLgl 66 (1072)
T KOG0979|consen 41 GPSLNMIIGPNGSGKSSIVCAICLGL 66 (1072)
T ss_pred CCceeeEECCCCCCchHHHHHHHHHc
Confidence 48889999999999999999988543
No 382
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=87.30 E-value=0.18 Score=55.24 Aligned_cols=37 Identities=27% Similarity=0.314 Sum_probs=26.3
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
+.++....++| ..|++||++|+||||.+.-|+-++.-
T Consensus 357 l~~i~l~i~~G--e~iaIvG~SGsGKSTLl~lL~gl~~p 393 (592)
T PRK10790 357 LQNINLSVPSR--GFVALVGHTGSGKSTLASLLMGYYPL 393 (592)
T ss_pred eeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCC
Confidence 33443333344 58999999999999988888776643
No 383
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.27 E-value=0.77 Score=47.24 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=24.6
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.|..++|.||.|+||||.+-.+|.++..
T Consensus 38 ~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 38 LAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3679999999999999999999988753
No 384
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=87.10 E-value=0.52 Score=42.31 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=20.7
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
++..|+|+|..||||||.+-.|..
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~ 122 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLN 122 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHc
Confidence 457899999999999999887764
No 385
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=87.07 E-value=5.4 Score=35.44 Aligned_cols=92 Identities=15% Similarity=0.236 Sum_probs=59.5
Q ss_pred CcceEEEeecCcEEEEeecccCCCCCCCcHHHHHHHhH--hhccc--CCCceeeccCCCceeeEEEEecccceEEEEEec
Q 013364 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCL--LEERS--GLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQ 76 (444)
Q Consensus 1 MLD~f~IftkgGiVLWs~~~~~~~~~~~pin~LI~~vl--lEeR~--~~~~~~~~~~~d~y~lkw~~~Ne~~LVFVvvYQ 76 (444)
||.++.|+++.|=++-++.+. .....-...+.+.+. +..|. ..+.+.+ ++|++=|+..++ |.|+++=.
T Consensus 1 MI~~i~i~n~~G~~i~~k~y~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~vy~~~~d--l~~~~v~~ 72 (141)
T PF01217_consen 1 MIKAILILNSQGKRILSKYYR--DVSEEERQKLFEKFIKKKSSRNSKQSPIFEH----DNYRIVYKRYSD--LYFVVVGD 72 (141)
T ss_dssp SEEEEEEEETTSEEEEEEESS--TSTSHHHHHHHHHHHHHHHTSSSSSTSEEEE----TTEEEEEEEETT--EEEEEEES
T ss_pred CEEEEEEEcCCCCEEEehhcC--CccHHHHHHHHHHHHHHHHhcccccceeeec----ccceeeeEeecc--EEEEEEee
Confidence 999999999999999987774 444444455555543 23332 3456788 999999998874 55555544
Q ss_pred cccchhhHHHHHHHHHHHHHHhcC
Q 013364 77 RILHLLYVDDLLAMMKQSFSEIYD 100 (444)
Q Consensus 77 ~iL~L~yvD~LL~~vk~~F~~~y~ 100 (444)
.=-.=..+-++|..+-..|...|+
T Consensus 73 ~~eNel~~~e~l~~~v~~l~~~~~ 96 (141)
T PF01217_consen 73 ENENELLLLEFLHRLVEVLDDYFG 96 (141)
T ss_dssp STSBHHHHHHHHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHhhhhhhhhhc
Confidence 333333344555555555555555
No 386
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=87.00 E-value=0.63 Score=53.66 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=24.4
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+++...++|+|+.||||||.+-.||..+.
T Consensus 205 r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 205 RRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred cCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 33446788999999999999999998774
No 387
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=87.00 E-value=0.63 Score=44.77 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=23.4
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.+.+.|+.|+|||..+.-+|..+.+.
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~ 61 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQ 61 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47889999999999999999988764
No 388
>PHA02244 ATPase-like protein
Probab=86.85 E-value=0.49 Score=49.48 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=20.9
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
-|+++||+|+||||.+.-||+.+.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999998653
No 389
>PRK10865 protein disaggregation chaperone; Provisional
Probab=86.77 E-value=0.63 Score=53.71 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=23.9
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
....++|+|+.||||||.+-.||..+..
T Consensus 198 ~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 3457889999999999999999998743
No 390
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.75 E-value=0.81 Score=50.93 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=24.5
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
-|..++|.||.||||||++--||.+|.-
T Consensus 37 i~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 37 VGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3678999999999999999999988853
No 391
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=86.74 E-value=0.79 Score=49.88 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=24.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.|.-|+|.||.|+|||+.+..||..|..
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 4678999999999999998888887754
No 392
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=86.73 E-value=0.57 Score=51.82 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=23.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+.++.|..|+|||||+++|...|.+
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l~~ 186 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLALVK 186 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999988765
No 393
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=86.73 E-value=0.68 Score=42.97 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.2
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.+..|+|||..+|||||.+-.|..
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~ 139 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKR 139 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhC
Confidence 467899999999999999988863
No 394
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=86.72 E-value=0.59 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.+++++||||.||||.+--|+-.
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 69999999999999999888765
No 395
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=86.66 E-value=0.55 Score=52.22 Aligned_cols=29 Identities=38% Similarity=0.472 Sum_probs=25.9
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+|.+|+|+|+.|+||||-...|+.+|..
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~ 486 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHA 486 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHH
Confidence 36899999999999999999999988854
No 396
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=86.66 E-value=0.68 Score=52.31 Aligned_cols=28 Identities=18% Similarity=0.193 Sum_probs=24.6
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
-|..++|+||-|+||||++-.||..|..
T Consensus 39 l~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 39 ISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 3678999999999999999999988753
No 397
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=86.65 E-value=1.9 Score=43.90 Aligned_cols=81 Identities=14% Similarity=0.154 Sum_probs=47.9
Q ss_pred HhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhHHHhhhcCCC--eEEEEEeeC
Q 013364 347 MTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKP--YVVVFVGVN 424 (444)
Q Consensus 347 i~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~~p--~vI~fVGvN 424 (444)
--+++...-|.+|++.+...+.. .|.+. ..+.+ -+....++-+....+|. + ...|-| .++.++|+.
T Consensus 38 ~~~gls~~~~~~i~~~~~~~~~~----~~~ta-~~~~~-~~~~~~~isTG~~~LD~---l---LgGGi~~G~iteI~G~~ 105 (313)
T TIGR02238 38 KIKGLSEAKVDKIKEAASKIINP----GFITA-FEISQ-KRKKVLKITTGSQALDG---I---LGGGIESMSITEVFGEF 105 (313)
T ss_pred HhcCCCHHHHHHHHHHHHhhhcc----cCccH-HHHHH-hhccCceeCCCCHHHHH---H---hCCCCcCCeEEEEECCC
Confidence 34899999999999998876532 23222 12211 11112222232233332 2 222322 689999999
Q ss_pred CCChhhHHHHHHHHH
Q 013364 425 GVGKSTNLAKVKLII 439 (444)
Q Consensus 425 GVGKTTTlAKLA~~l 439 (444)
|+||||.+-.+|...
T Consensus 106 GsGKTql~lqla~~~ 120 (313)
T TIGR02238 106 RCGKTQLSHTLCVTA 120 (313)
T ss_pred CCCcCHHHHHHHHHH
Confidence 999999998888643
No 398
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=86.61 E-value=0.68 Score=53.39 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=24.2
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
++...++|+|+.|||||+.+-.||..+..
T Consensus 192 ~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 192 RTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 34467789999999999999999987743
No 399
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.56 E-value=0.52 Score=48.35 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=19.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..|++|||||+|||-..--||..|
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~L 121 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKIL 121 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHh
Confidence 579999999999997666666554
No 400
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=86.51 E-value=0.31 Score=54.04 Aligned_cols=36 Identities=19% Similarity=0.400 Sum_probs=26.5
Q ss_pred hhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 402 ~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+|+++.....+| .+++++|+||+||||.+--|+-.+
T Consensus 40 iL~~vs~~i~~G--e~~aI~G~sGsGKSTLL~~L~g~~ 75 (617)
T TIGR00955 40 LLKNVSGVAKPG--ELLAVMGSSGAGKTTLMNALAFRS 75 (617)
T ss_pred cccCCEEEEeCC--eEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444333444 699999999999999999888643
No 401
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=86.36 E-value=0.3 Score=59.40 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..+++||++|+||||.+.-|+.+|.
T Consensus 1195 ~~vAIVG~SGsGKSTl~~LL~r~yd 1219 (1466)
T PTZ00265 1195 KTTAIVGETGSGKSTVMSLLMRFYD 1219 (1466)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4789999999999999998888765
No 402
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=86.28 E-value=0.57 Score=53.59 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=23.7
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
-.++||++|.||||.++.|+.-..+..
T Consensus 438 hT~I~G~tGaGKTvLl~~llaq~~k~~ 464 (796)
T COG3451 438 HTLIIGPTGAGKTVLLSFLLAQALKYG 464 (796)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 689999999999999999998876643
No 403
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=86.22 E-value=0.69 Score=49.29 Aligned_cols=28 Identities=18% Similarity=0.244 Sum_probs=24.8
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
++-++|.|+.|+|||+.+..+|..+.++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~ 157 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh
Confidence 3459999999999999999999998765
No 404
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=86.16 E-value=0.2 Score=60.95 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=26.5
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
|+++.....+| .+++++||||+||||.|.-|+-.+.
T Consensus 442 l~~i~l~i~~G--~~~~I~G~~GsGKSTLl~~l~G~~~ 477 (1490)
T TIGR01271 442 LKNISFKLEKG--QLLAVAGSTGSGKSSLLMMIMGELE 477 (1490)
T ss_pred eeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44444434444 6899999999999999998876543
No 405
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.04 E-value=0.48 Score=55.87 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=22.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..+++|||-|+||||.|+-|=.||
T Consensus 1017 qTvALVG~SGsGKSTvI~LLeRfY 1040 (1228)
T KOG0055|consen 1017 QTVALVGPSGSGKSTVISLLERFY 1040 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999988876
No 406
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=86.00 E-value=0.46 Score=59.60 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=20.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||++.-||-.+
T Consensus 957 ei~aLLG~NGAGKSTLLkiLaGLl 980 (2272)
T TIGR01257 957 QITAFLGHNGAGKTTTLSILTGLL 980 (2272)
T ss_pred cEEEEECCCCChHHHHHHHHhcCC
Confidence 478999999999999999887654
No 407
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=85.94 E-value=0.79 Score=42.15 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+++|+|+.|+||||.+.-||+.+..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 59999999999999999999987754
No 408
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=85.91 E-value=0.55 Score=50.19 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=18.9
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHH
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILI 441 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~ 441 (444)
+||+||+ |||||.+.|++.|+.
T Consensus 112 ~vaITGTNGKTTTTsli~~~l~~ 134 (448)
T COG0771 112 IVAITGTNGKTTTTSLIAHLLKA 134 (448)
T ss_pred EEEEECCCchHHHHHHHHHHHHh
Confidence 6777777 899999999998875
No 409
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=85.86 E-value=0.85 Score=51.66 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=23.7
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+..++|+|+.||||||.+--||..+..
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457889999999999999999988744
No 410
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=85.83 E-value=0.43 Score=47.60 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=16.3
Q ss_pred eEEEEEeeCCCChhhHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAK 434 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAK 434 (444)
+-+++||+.|+|||+.+.-
T Consensus 34 ~pvLl~G~~GtGKT~li~~ 52 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQN 52 (272)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred CcEEEECCCCCchhHHHHh
Confidence 4579999999999999854
No 411
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=85.83 E-value=0.58 Score=43.32 Aligned_cols=23 Identities=35% Similarity=0.277 Sum_probs=20.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
..|+|||..||||||.|-.|...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Confidence 47999999999999999888753
No 412
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=85.73 E-value=0.33 Score=54.77 Aligned_cols=28 Identities=32% Similarity=0.223 Sum_probs=21.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
..|++||.+|+||||.+--|+-.|.-..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gly~p~~ 527 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGLYKPQQ 527 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 5799999999999998776666554433
No 413
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=85.71 E-value=0.75 Score=52.84 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=24.9
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+..++|.|+.|+||||+.--||.+|.-
T Consensus 36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 36 INHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 3567999999999999999999999863
No 414
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=85.66 E-value=1.1 Score=46.73 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=25.4
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
-|.-++|.||.|+||+|..--+|.+|.-
T Consensus 40 l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 40 LHHAWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4788999999999999999999999864
No 415
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=85.62 E-value=0.61 Score=52.78 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.8
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.|..|+|.||+|+||||.+..||..+
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Confidence 46789999999999999988888765
No 416
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=85.58 E-value=0.72 Score=48.51 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=25.8
Q ss_pred hcCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 411 EQRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 411 ~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
..+....+.|-||.||||||...-||.....
T Consensus 44 ~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~ 74 (436)
T COG2256 44 EAGHLHSMILWGPPGTGKTTLARLIAGTTNA 74 (436)
T ss_pred hcCCCceeEEECCCCCCHHHHHHHHHHhhCC
Confidence 4667889999999999999988888876543
No 417
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.53 E-value=0.61 Score=49.02 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.3
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||||+ |||||..-|+..|...
T Consensus 104 ~I~ITGT~GKTTTt~ml~~iL~~~ 127 (418)
T PRK00683 104 SLGITGSTGKTTTILFLEHLLKRL 127 (418)
T ss_pred EEEEECCCChHHHHHHHHHHHHHc
Confidence 4999998 9999999999998753
No 418
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=85.50 E-value=1.1 Score=50.71 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=23.1
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.|.-|+|.||+|+|||+.+..||.-+.
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~ 512 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESG 512 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 467799999999999999999987543
No 419
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=85.28 E-value=0.71 Score=49.32 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=25.9
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
+..=|++.|+.|.||||.++-||-||..+
T Consensus 262 raeGILIAG~PGaGKsTFaqAlAefy~~~ 290 (604)
T COG1855 262 RAEGILIAGAPGAGKSTFAQALAEFYASQ 290 (604)
T ss_pred hhcceEEecCCCCChhHHHHHHHHHHHhc
Confidence 34569999999999999999999999865
No 420
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=85.27 E-value=1.3 Score=48.78 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=24.1
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
-|..++|+||.|+||||++-.+|..+.
T Consensus 37 ~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 37 ISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 367899999999999999999998875
No 421
>COG1162 Predicted GTPases [General function prediction only]
Probab=85.24 E-value=0.51 Score=47.88 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.2
Q ss_pred CeEEEEEeeCCCChhhHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
+.+.+|+|..||||||.|-.|+=
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCc
Confidence 35999999999999999988764
No 422
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=85.06 E-value=1.1 Score=49.14 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=24.6
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
-|..++|.|+-|+||||++-.||.+|.
T Consensus 35 l~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 35 LAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred CCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 467899999999999999999999885
No 423
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=85.03 E-value=1.7 Score=45.69 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=24.7
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.|.-++|.||.|+||||..--+|..|.-
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 5788999999999999999999887754
No 424
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=85.02 E-value=0.56 Score=48.41 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..|+++|=+|+||||+|-.|+.+.
T Consensus 174 ~NILisGGTGSGKTTlLNal~~~i 197 (355)
T COG4962 174 CNILISGGTGSGKTTLLNALSGFI 197 (355)
T ss_pred eeEEEeCCCCCCHHHHHHHHHhcC
Confidence 589999999999999999998763
No 425
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=85.00 E-value=0.81 Score=55.54 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=26.7
Q ss_pred hhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 402 ~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+|+++.....+| .+++++|+||+||||.|--||-.+
T Consensus 76 iL~~vs~~i~~G--e~~aIlG~nGsGKSTLLk~LaG~~ 111 (1394)
T TIGR00956 76 ILKPMDGLIKPG--ELTVVLGRPGSGCSTLLKTIASNT 111 (1394)
T ss_pred eeeCCEEEEECC--EEEEEECCCCCCHHHHHHHHhCCC
Confidence 344443333444 699999999999999999998754
No 426
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=84.99 E-value=0.66 Score=48.76 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.0
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||||+ |||||.+-|+..|...
T Consensus 104 ~I~VTGT~GKTTTt~li~~iL~~~ 127 (433)
T TIGR01087 104 VVAITGTNGKTTTTSLLYHLLKAA 127 (433)
T ss_pred EEEEECCCCHHHHHHHHHHHHHhc
Confidence 6789998 9999999999988753
No 427
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=84.89 E-value=0.82 Score=47.83 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=24.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
..++|.|+.|+|||+.+..||..+.++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 458899999999999999999998765
No 428
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=84.89 E-value=3.3 Score=44.30 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=20.3
Q ss_pred CeEEEEEeeCCCChhhHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
+..|++||.+||||||.+-.|+.
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~ 237 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLG 237 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999988864
No 429
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.89 E-value=0.67 Score=49.43 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||||+ |||||.+-|+..|...
T Consensus 124 ~I~VTGTnGKTTTt~mi~~iL~~~ 147 (480)
T PRK01438 124 WLAVTGTNGKTTTVQMLASMLRAA 147 (480)
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHc
Confidence 6889998 9999999999988753
No 430
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=84.82 E-value=0.93 Score=47.36 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=24.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.++++.|++|+||||.+..+|+.+.++
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~ 109 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKR 109 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 699999999999999999999887654
No 431
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=84.81 E-value=0.75 Score=46.63 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.4
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..++.++|++|+||||.+-.+|+...
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~ 127 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQ 127 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhc
Confidence 47999999999999999999998754
No 432
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.80 E-value=0.67 Score=49.17 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=19.7
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||||+ |||||..-|++-|...
T Consensus 116 vI~VTGT~GKTTTt~ll~~iL~~~ 139 (460)
T PRK01390 116 FIAITGTNGKSTTTALIAHILREA 139 (460)
T ss_pred EEEEeCCCcHHHHHHHHHHHHHhc
Confidence 5788888 9999999999888653
No 433
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.79 E-value=0.33 Score=47.90 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=23.4
Q ss_pred hhcCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 410 KEQRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 410 ~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..+| .+..++|+.|+||||.+.-|.-.++
T Consensus 31 V~~G--ei~~iiGgSGsGKStlLr~I~Gll~ 59 (263)
T COG1127 31 VPRG--EILAILGGSGSGKSTLLRLILGLLR 59 (263)
T ss_pred ecCC--cEEEEECCCCcCHHHHHHHHhccCC
Confidence 3455 6999999999999999988775543
No 434
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.67 E-value=0.7 Score=48.68 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHH
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILI 441 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~ 441 (444)
+|||+|+ |||||.+-|+..|..
T Consensus 107 ~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 107 IVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHH
Confidence 7899998 999999999998865
No 435
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.65 E-value=1.2 Score=48.14 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=21.2
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+..++|.||.|+||||++.-+|..|.
T Consensus 38 ~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 38 SHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56889999999999777777777654
No 436
>CHL00176 ftsH cell division protein; Validated
Probab=84.60 E-value=1.3 Score=49.51 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=23.3
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..|.-|+|+||+|+|||+.+-.||..+
T Consensus 214 ~~p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 214 KIPKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 347789999999999999999998754
No 437
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=84.59 E-value=1.2 Score=49.16 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=25.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
-|..++|.||-|+||||.+-.||.+|.-
T Consensus 37 i~hayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 37 IANAYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 3678999999999999999999998863
No 438
>PRK12608 transcription termination factor Rho; Provisional
Probab=84.58 E-value=0.93 Score=47.45 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=25.2
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
-.-++++|+-|+||||.+..||..+..++
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i~~~~ 161 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAVAANH 161 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 36789999999999999999999887653
No 439
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=84.50 E-value=0.7 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.2
Q ss_pred CeEEEEEeeCCCChhhHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
+..|+|||.+||||||++-.|.-
T Consensus 118 slrIvLVGKTGVGKSSLINSILG 140 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFG 140 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999998753
No 440
>PLN03140 ABC transporter G family member; Provisional
Probab=84.47 E-value=0.37 Score=58.66 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.+++++||||+||||.+--||-.
T Consensus 907 el~aL~G~sGaGKTTLL~~LaG~ 929 (1470)
T PLN03140 907 VLTALMGVSGAGKTTLMDVLAGR 929 (1470)
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999988864
No 441
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=84.45 E-value=0.93 Score=48.59 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=24.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.++++.|.+|+||||.+-.+|+.+.++
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~ 121 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKN 121 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 699999999999999999999887665
No 442
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=84.41 E-value=0.85 Score=48.03 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=24.3
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
..-++++|++|+||||.|..|..++...
T Consensus 42 ~~h~~i~g~tGsGKt~~i~~l~~~~~~~ 69 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIRELLASIRAR 69 (410)
T ss_pred hccEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999888887654
No 443
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=84.37 E-value=0.39 Score=58.19 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 790 e~~aI~G~sGaGKSTLL~~Lag~~ 813 (1394)
T TIGR00956 790 TLTALMGASGAGKTTLLNVLAERV 813 (1394)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999888754
No 444
>COG5545 Predicted P-loop ATPase and inactivated derivatives [General function prediction only]
Probab=84.33 E-value=2.2 Score=44.70 Aligned_cols=41 Identities=32% Similarity=0.473 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCCCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHH
Q 013364 382 VQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 382 v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA 436 (444)
.+-.|..++.+.|-|....| .+..++|+.|+||||.+.+|+
T Consensus 183 ~k~f~VgAVarv~~Pg~K~D--------------f~l~L~G~Qgs~KsTfl~~l~ 223 (517)
T COG5545 183 SKCFMVGAVARVLWPGAKVD--------------FMLVLEGPQGSHKSTFLSELF 223 (517)
T ss_pred HHHHHHHHHHHHhCCCCcce--------------eEEEEecCCCCCccchHHHhc
Confidence 34455566666666644332 689999999999999999994
No 445
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.32 E-value=0.74 Score=48.68 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.3
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHH
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILI 441 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~ 441 (444)
+|||||+ |||||..-|+..|..
T Consensus 110 ~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 110 VIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHH
Confidence 7899998 999999999987764
No 446
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=84.20 E-value=0.72 Score=49.05 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=19.9
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||||+ |||||.+-|++.|+..
T Consensus 109 ~I~ITGTnGKTTTt~ll~~iL~~~ 132 (461)
T PRK00421 109 SIAVAGTHGKTTTTSLLAHVLAEA 132 (461)
T ss_pred EEEEECCCCHHHHHHHHHHHHHhc
Confidence 6788888 9999999999988754
No 447
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=84.13 E-value=0.29 Score=59.81 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=22.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
..+++||+||+||||.+.-|+-.+.-
T Consensus 665 ~~v~IvG~~GsGKSTLl~~l~g~~~~ 690 (1522)
T TIGR00957 665 ALVAVVGQVGCGKSSLLSALLAEMDK 690 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 57999999999999999988876543
No 448
>PTZ00243 ABC transporter; Provisional
Probab=84.13 E-value=0.26 Score=60.31 Aligned_cols=41 Identities=34% Similarity=0.434 Sum_probs=0.0
Q ss_pred hhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhcC
Q 013364 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDFG 444 (444)
Q Consensus 402 ~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~g 444 (444)
+++++.....+| .+++++|+||+||||.|.-|+-.+.-..|
T Consensus 675 iL~~isl~i~~G--~~~~IiG~nGsGKSTLL~~i~G~~~~~~G 715 (1560)
T PTZ00243 675 LLRDVSVSVPRG--KLTVVLGATGSGKSTLLQSLLSQFEISEG 715 (1560)
T ss_pred eEeeeEEEECCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCc
No 449
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.10 E-value=0.75 Score=49.29 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||||+ |||||..-|+..|...
T Consensus 123 vIaVTGTnGKTTTt~ml~~iL~~~ 146 (473)
T PRK00141 123 WLAVTGTNGKTTTTAMLAAMMQEG 146 (473)
T ss_pred EEEEeCCCcHHHHHHHHHHHHHhc
Confidence 7899998 9999999999988753
No 450
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=84.05 E-value=0.71 Score=49.85 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=29.3
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhcC
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDFG 444 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~g 444 (444)
|++|.+...+| ++|++|||.|.||||.+.-|-.+|--+.|
T Consensus 554 l~disF~v~pG--ktvAlVG~SGaGKSTimRlLfRffdv~sG 593 (790)
T KOG0056|consen 554 LSDISFTVQPG--KTVALVGPSGAGKSTIMRLLFRFFDVNSG 593 (790)
T ss_pred eecceEEecCC--cEEEEECCCCCchhHHHHHHHHHhhccCc
Confidence 34444433344 68999999999999999888887765544
No 451
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=84.04 E-value=0.74 Score=48.31 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.7
Q ss_pred EEEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 419 VFVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 419 ~fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
-+|||||+ |||||..-|+..|...
T Consensus 75 ~vI~VTGTnGKTTt~~ll~~iL~~~ 99 (417)
T TIGR01143 75 KVIGITGSSGKTTTKEMLAAILSHK 99 (417)
T ss_pred CEEEEcCCCchhHHHHHHHHHHhcc
Confidence 37999998 9999999999888653
No 452
>PLN03232 ABC transporter C family member; Provisional
Probab=84.00 E-value=0.35 Score=59.03 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=21.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
..|.+||++|+||||.+.-|...+.-
T Consensus 1263 ekvaIVG~SGSGKSTL~~lL~rl~~p 1288 (1495)
T PLN03232 1263 EKVGVVGRTGAGKSSMLNALFRIVEL 1288 (1495)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 47999999999999998888776543
No 453
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.95 E-value=0.77 Score=48.55 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.0
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||+|+ |||||.+-|+..|...
T Consensus 110 ~I~VTGT~GKTTTt~li~~iL~~~ 133 (448)
T PRK03803 110 VIAITGSNGKSTVTTLVGEMAKAA 133 (448)
T ss_pred EEEEECCCcHHHHHHHHHHHHHhc
Confidence 5788998 9999999999988763
No 454
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.88 E-value=0.56 Score=50.98 Aligned_cols=25 Identities=40% Similarity=0.361 Sum_probs=21.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..|.+||.||+||||-|--|=.+|-
T Consensus 379 ekVaIvG~nGsGKSTilr~LlrF~d 403 (591)
T KOG0057|consen 379 EKVAIVGSNGSGKSTILRLLLRFFD 403 (591)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999988877764
No 455
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=83.87 E-value=1.2 Score=43.05 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.4
Q ss_pred CeEEEEEeeCCCChhhHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
..++++.||||.||||.+.-||-
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999888876
No 456
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=83.86 E-value=0.93 Score=48.47 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=23.1
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
-++|.|+.|+|||+.+.-+|..+.++
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~ 168 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRES 168 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 48899999999999999999988753
No 457
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.85 E-value=0.79 Score=48.25 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=19.7
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||+|+ |||||.+-|+.-|...
T Consensus 110 ~I~VTGT~GKTTTt~ll~~iL~~~ 133 (447)
T PRK02472 110 IIGITGSNGKTTTTTLIGEMLKAG 133 (447)
T ss_pred EEEEeCCCchHHHHHHHHHHHHHC
Confidence 5788888 9999999999888653
No 458
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=83.72 E-value=0.79 Score=48.57 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.6
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||||+ |||||.+-|+..|...
T Consensus 104 ~I~ITGT~GKTTTt~li~~iL~~~ 127 (448)
T TIGR01081 104 VLAVAGTHGKTTTASMLAWVLEQC 127 (448)
T ss_pred EEEEECCCcHHHHHHHHHHHHHhc
Confidence 5688888 9999999999988753
No 459
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=83.70 E-value=0.37 Score=58.88 Aligned_cols=26 Identities=31% Similarity=0.152 Sum_probs=22.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
..|.+||++|+||||.+.-|..++.-
T Consensus 1313 ekiaIVGrTGsGKSTL~~lL~rl~~~ 1338 (1522)
T TIGR00957 1313 EKVGIVGRTGAGKSSLTLGLFRINES 1338 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCccC
Confidence 47999999999999999888776543
No 460
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=83.59 E-value=0.8 Score=49.12 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=20.5
Q ss_pred EEEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 419 VFVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 419 ~fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
-+|||||+ |||||..-|+..|...
T Consensus 109 ~vIgVTGS~GKTTT~~ml~~iL~~~ 133 (479)
T PRK14093 109 KVIAVTGSVGKTSTKEALRGVLGAQ 133 (479)
T ss_pred CEEEEcCCCCccHHHHHHHHHHHhc
Confidence 36889998 9999999999988753
No 461
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.56 E-value=0.82 Score=48.97 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||||+ |||||..-|+..|...
T Consensus 117 ~IaITGTnGKTTTt~ll~~iL~~~ 140 (468)
T PRK04690 117 TVCVTGTKGKSTTTALLAHLLRAA 140 (468)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHhc
Confidence 6899998 9999999999988653
No 462
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=83.56 E-value=0.41 Score=52.23 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..+++||++|.||||.+.-|+-++.
T Consensus 348 ~~talvG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 348 QLTALVGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC
Confidence 5899999999999999998887654
No 463
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=83.52 E-value=0.94 Score=48.17 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=23.8
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
-++|.|+.|+|||+.+.-+|..+.++
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~ 175 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEK 175 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 48899999999999999999998775
No 464
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.52 E-value=0.83 Score=48.31 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.1
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHH
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILI 441 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~ 441 (444)
+|||+|+ |||||.+-|+.-|..
T Consensus 111 ~I~VTGT~GKTTTt~ml~~iL~~ 133 (459)
T PRK02705 111 WVGITGTNGKTTVTALLAHILQA 133 (459)
T ss_pred EEEEeCCCchHHHHHHHHHHHHH
Confidence 5788888 999999999988865
No 465
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=83.51 E-value=1.4 Score=45.02 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=19.2
Q ss_pred CeEEEEEeeCCCChhhHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA 436 (444)
...|++||-+||||||++-.|.
T Consensus 38 ~~rIllvGktGVGKSSliNsIl 59 (313)
T TIGR00991 38 SLTILVMGKGGVGKSSTVNSII 59 (313)
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 5689999999999999987654
No 466
>PLN03130 ABC transporter C family member; Provisional
Probab=83.44 E-value=0.37 Score=59.21 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=22.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
..|.+||+||+||||.+.-|+..+.-
T Consensus 1266 ekVaIVGrSGSGKSTLl~lL~rl~~p 1291 (1622)
T PLN03130 1266 EKVGIVGRTGAGKSSMLNALFRIVEL 1291 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCC
Confidence 47999999999999999888876543
No 467
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.39 E-value=0.82 Score=48.84 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=19.6
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHH
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILI 441 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~ 441 (444)
+|||||+ |||||.+-|+.-|..
T Consensus 106 ~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 106 FIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred EEEEECCCcHHHHHHHHHHHHHh
Confidence 6899998 999999999998875
No 468
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=83.36 E-value=0.46 Score=57.95 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..|.+||.||+||||.+.-|+..+.
T Consensus 1246 ekvaIvGrSGsGKSTLl~lL~rl~~ 1270 (1490)
T TIGR01271 1246 QRVGLLGRTGSGKSTLLSALLRLLS 1270 (1490)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcC
Confidence 4689999999999999998887763
No 469
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.28 E-value=0.85 Score=47.99 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=19.5
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||+|+ |||||-+-|+.-|...
T Consensus 91 ~i~ITGT~GKTTTt~ml~~iL~~~ 114 (401)
T PRK03815 91 SIWISGTNGKTTTTQMTTHLLEDF 114 (401)
T ss_pred EEEEECCCcHHHHHHHHHHHHHHC
Confidence 5788887 9999999999988753
No 470
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.24 E-value=1.5 Score=48.97 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=24.0
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
+.-++|.|+.|+||||++--||.+|..
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhcC
Confidence 457899999999999999999999864
No 471
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=83.22 E-value=1.1 Score=49.99 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=23.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.++++.|..|+|||||+++|...|.+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~ 193 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQ 193 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999998877654
No 472
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.11 E-value=0.87 Score=49.03 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||||+ |||||..-|+..|...
T Consensus 119 vIgITGTnGKTTTt~li~~iL~~~ 142 (488)
T PRK03369 119 WLVVTGTNGKTTTTSMLHAMLIAA 142 (488)
T ss_pred EEEEECCCcHHHHHHHHHHHHHHc
Confidence 6899998 9999999999888753
No 473
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=83.04 E-value=1.1 Score=47.19 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=24.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.-+++||+-||||||.+-.|++.+.++
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 678999999999999999999888765
No 474
>PRK06620 hypothetical protein; Validated
Probab=82.98 E-value=0.95 Score=43.45 Aligned_cols=23 Identities=13% Similarity=0.210 Sum_probs=19.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
..+.|.||.|+|||+.+.-+|..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 57999999999999998866653
No 475
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=82.98 E-value=1 Score=44.75 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=20.7
Q ss_pred CCeEEEEEeeCCCChhhHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA 436 (444)
++..|+|||..||||||.+-.|.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~ 139 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLA 139 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHh
Confidence 46789999999999999999885
No 476
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=82.97 E-value=0.89 Score=48.19 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=19.5
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||||+ |||||.+-|+.-|...
T Consensus 101 ~IaITGTnGKTTTt~ll~~iL~~~ 124 (448)
T TIGR01082 101 SIAVAGTHGKTTTTAMIAVILKEA 124 (448)
T ss_pred EEEEECCCChHHHHHHHHHHHHHc
Confidence 6788888 9999999999888653
No 477
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.87 E-value=0.91 Score=47.96 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=18.9
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHH
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILI 441 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~ 441 (444)
+|||||+ |||||.+-|++-|..
T Consensus 112 ~I~ITGT~GKTTTt~li~~iL~~ 134 (445)
T PRK04308 112 VIAITGSNGKTTVTSLVGYLCIK 134 (445)
T ss_pred EEEEECCCcHHHHHHHHHHHHHH
Confidence 5888887 999999999988765
No 478
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=82.84 E-value=1.3 Score=50.38 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=22.4
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
+..++++|+.|||||+.+-.||..+..
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~ 233 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 456688999999999999999876543
No 479
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=82.65 E-value=1.1 Score=42.86 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=21.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
-||.++|..|+||||.|.||-+.
T Consensus 33 dVisIIGsSGSGKSTfLRCiN~L 55 (256)
T COG4598 33 DVISIIGSSGSGKSTFLRCINFL 55 (256)
T ss_pred CEEEEecCCCCchhHHHHHHHhh
Confidence 69999999999999999998653
No 480
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=82.63 E-value=0.5 Score=46.59 Aligned_cols=32 Identities=28% Similarity=0.208 Sum_probs=25.7
Q ss_pred hcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhcC
Q 013364 411 EQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDFG 444 (444)
Q Consensus 411 ~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~g 444 (444)
.+| .++.+||+.|+||||.+--||-|.+-..|
T Consensus 31 ~~G--e~lgivGeSGsGKSTL~r~l~Gl~~p~~G 62 (252)
T COG1124 31 ERG--ETLGIVGESGSGKSTLARLLAGLEKPSSG 62 (252)
T ss_pred cCC--CEEEEEcCCCCCHHHHHHHHhcccCCCCc
Confidence 455 69999999999999999988877654433
No 481
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=82.56 E-value=0.63 Score=45.44 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=22.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..|.++|-||.||||.+.-||-++.
T Consensus 33 ~FvtViGsNGAGKSTlln~iaG~l~ 57 (263)
T COG1101 33 DFVTVIGSNGAGKSTLLNAIAGDLK 57 (263)
T ss_pred ceEEEEcCCCccHHHHHHHhhCccc
Confidence 5889999999999999998887664
No 482
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.55 E-value=0.94 Score=48.72 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.6
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||+|+ |||||.+-|+..|...
T Consensus 123 ~I~VTGTnGKTTTt~ml~~iL~~~ 146 (498)
T PRK02006 123 VLAITGTNGKTTTTALTGLLCERA 146 (498)
T ss_pred EEEEECCCcHHHHHHHHHHHHHHc
Confidence 6788887 9999999999988754
No 483
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=82.53 E-value=1.2 Score=51.77 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=25.0
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
.+-++++|++|+||||++.-|+..+...+
T Consensus 475 n~n~~I~G~TGSGKS~l~~~li~q~~~~~ 503 (893)
T TIGR03744 475 NAHLLILGPTGAGKSATLTNLLMQVMAVH 503 (893)
T ss_pred cccEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 57899999999999999999988776543
No 484
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=82.49 E-value=1.8 Score=44.94 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=22.9
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
..-|+|.|++|+||||.+.-|+.++..
T Consensus 38 ~~~vli~G~~GtGKs~~ar~~~~~l~~ 64 (350)
T CHL00081 38 IGGVMIMGDRGTGKSTTIRALVDLLPE 64 (350)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 346889999999999999888888764
No 485
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=82.49 E-value=0.58 Score=50.60 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=21.4
Q ss_pred hcCCCeEEEEEeeCCCChhhHHHHHHHH
Q 013364 411 EQRKPYVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 411 ~~~~p~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
..||. .-+||+||.||||.+--||..
T Consensus 104 ~~GrR--YGLvGrNG~GKsTLLRaia~~ 129 (582)
T KOG0062|consen 104 SRGRR--YGLVGRNGIGKSTLLRAIANG 129 (582)
T ss_pred ecccc--cceeCCCCCcHHHHHHHHHhc
Confidence 45544 578999999999999999873
No 486
>PRK11054 helD DNA helicase IV; Provisional
Probab=82.38 E-value=14 Score=41.68 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=22.1
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
.++++|.-|+||||+|.--+.||...+
T Consensus 211 ~~lV~agaGSGKT~vl~~r~ayLl~~~ 237 (684)
T PRK11054 211 SLLVLAGAGSGKTSVLVARAGWLLARG 237 (684)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHhC
Confidence 468899999999999977777777654
No 487
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=82.36 E-value=1.1 Score=44.29 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
-.++++||.||||||.|.-||..+-
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhh
Confidence 3589999999999999999998653
No 488
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.24 E-value=1 Score=47.53 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=20.6
Q ss_pred EEEEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 418 VVFVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 418 I~fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+-+|||+|+ |||||..-|+.-|...
T Consensus 108 ~~vI~ITGS~GKTTt~~~l~~iL~~~ 133 (450)
T PRK14106 108 APIVAITGTNGKTTTTTLLGEIFKNA 133 (450)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHc
Confidence 346788888 9999999999888653
No 489
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=82.09 E-value=1.3 Score=40.48 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.5
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.+..++|+|..||||||.+-.|..
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~ 137 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRG 137 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999988763
No 490
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=82.07 E-value=1.1 Score=44.69 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.3
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.+..|+|||..+|||||.+-.|..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~ 143 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAG 143 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 467899999999999999998864
No 491
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=81.98 E-value=1.4 Score=45.16 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=23.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.++.++|+.|+||||.+--+++...++
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~ 82 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKA 82 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 699999999999999988887766544
No 492
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=81.90 E-value=1.9 Score=38.09 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.||++-|.=|+||||.+.-||..|.
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcC
Confidence 6999999999999999999988763
No 493
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=81.89 E-value=0.81 Score=44.48 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=18.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.--++||.||+||||.|--|+-
T Consensus 41 sRcLlVGaNGaGKtTlLKiLsG 62 (291)
T KOG2355|consen 41 SRCLLVGANGAGKTTLLKILSG 62 (291)
T ss_pred ceEEEEecCCCchhhhHHHhcC
Confidence 4678999999999998876653
No 494
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=81.85 E-value=1.2 Score=50.53 Aligned_cols=28 Identities=21% Similarity=0.113 Sum_probs=24.4
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.+.++++|++|+||||++..|+..+...
T Consensus 434 ~~n~~I~G~tGsGKS~~~~~l~~~~~~~ 461 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLLNFLLAQMQKY 461 (785)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhcc
Confidence 4689999999999999999998877653
No 495
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=81.83 E-value=1.3 Score=47.63 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=24.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.++++.|++|+||||.+..+|+...++
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ 290 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACAN 290 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 799999999999999999999987654
No 496
>PRK10536 hypothetical protein; Provisional
Probab=81.82 E-value=1.4 Score=43.98 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=22.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+|+++|+.|+|||+.+..+|....
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~l 99 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEAL 99 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3999999999999999999998644
No 497
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=81.78 E-value=1.1 Score=45.69 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=22.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.-++|.||.|||||+...-||..+-
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~ 68 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALG 68 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhC
Confidence 3589999999999999999998764
No 498
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=81.75 E-value=0.99 Score=48.20 Aligned_cols=24 Identities=25% Similarity=0.145 Sum_probs=21.1
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
-..+.++|+||+||||.+.-|+..
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~ 185 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG 185 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC
Confidence 368999999999999999988753
No 499
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=81.72 E-value=1 Score=46.29 Aligned_cols=24 Identities=29% Similarity=0.196 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..++|+|+||+||||.+.-||.+.
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~ 93 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGT 93 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCC
Confidence 689999999999999999888654
No 500
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=81.71 E-value=1.1 Score=48.10 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.8
Q ss_pred EEEEeeCCC-ChhhHHHHHHHHHHH
Q 013364 418 VVFVGVNGV-GKSTNLAKVKLIILI 441 (444)
Q Consensus 418 I~fVGvNGV-GKTTTlAKLA~~l~~ 441 (444)
+-+|||||+ |||||..-|+..|..
T Consensus 110 ~~vIgITGTnGKTTT~~~l~~iL~~ 134 (481)
T PRK14022 110 LKLLAFTGTKGKTTAAYFAYHILKQ 134 (481)
T ss_pred cEEEEEeCCCcHHHHHHHHHHHHHH
Confidence 447899998 999999999998875
Done!