Query 013364
Match_columns 444
No_of_seqs 238 out of 1524
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 09:11:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fh5_A Signal recognition part 100.0 4.3E-46 1.5E-50 344.4 11.4 138 1-145 10-156 (185)
2 3e70_C DPA, signal recognition 99.7 5.5E-17 1.9E-21 163.3 13.4 117 325-444 42-158 (328)
3 3b9q_A Chloroplast SRP recepto 99.6 1.2E-15 4E-20 151.8 11.9 120 309-444 7-129 (302)
4 3dm5_A SRP54, signal recogniti 99.6 1.8E-15 6.2E-20 157.7 13.4 120 315-442 8-127 (443)
5 3kl4_A SRP54, signal recogniti 99.6 2.1E-15 7.2E-20 157.0 13.5 120 317-443 6-125 (433)
6 2xxa_A Signal recognition part 99.6 1.7E-15 5.8E-20 157.8 12.5 121 315-443 7-128 (433)
7 2og2_A Putative signal recogni 99.6 9.2E-15 3.2E-19 148.8 12.1 99 334-444 85-186 (359)
8 1j8m_F SRP54, signal recogniti 99.6 2.1E-14 7.1E-19 142.5 13.9 121 314-443 4-126 (297)
9 1zu4_A FTSY; GTPase, signal re 99.5 1.1E-14 3.7E-19 146.0 10.5 123 308-443 10-133 (320)
10 2ffh_A Protein (FFH); SRP54, s 99.5 3.4E-14 1.2E-18 147.6 14.4 119 315-443 7-126 (425)
11 1vma_A Cell division protein F 99.5 4.8E-14 1.6E-18 140.5 10.4 109 310-443 24-132 (306)
12 2yhs_A FTSY, cell division pro 99.5 4.2E-14 1.5E-18 149.1 9.9 102 327-444 220-322 (503)
13 2vx8_A Nucleoporin-like protei 99.5 5E-14 1.7E-18 129.1 7.4 113 1-123 44-159 (169)
14 2v3c_C SRP54, signal recogniti 99.5 2.4E-13 8.2E-18 141.5 13.5 121 314-442 5-126 (432)
15 1rj9_A FTSY, signal recognitio 99.5 4.7E-14 1.6E-18 140.4 7.6 113 320-444 14-131 (304)
16 2j37_W Signal recognition part 99.4 8.4E-14 2.9E-18 147.5 7.9 118 317-442 10-128 (504)
17 1ls1_A Signal recognition part 99.4 5E-12 1.7E-16 125.0 14.3 118 316-443 8-126 (295)
18 2px0_A Flagellar biosynthesis 99.3 1.5E-12 5E-17 129.1 9.2 98 333-444 36-134 (296)
19 1nrj_A Signal recognition part 98.1 4.6E-06 1.6E-10 73.2 6.8 77 1-77 1-93 (158)
20 4afi_A AP-3 complex subunit de 97.3 0.0034 1.2E-07 57.3 13.3 103 4-120 57-166 (173)
21 2e87_A Hypothetical protein PH 97.2 0.00027 9.3E-09 70.9 5.0 100 334-437 73-189 (357)
22 1gvn_B Zeta; postsegregational 97.0 0.00087 3E-08 65.4 6.5 49 379-439 9-57 (287)
23 3ec2_A DNA replication protein 96.9 0.00047 1.6E-08 61.6 3.8 28 415-442 38-65 (180)
24 3tqc_A Pantothenate kinase; bi 96.9 0.00062 2.1E-08 68.0 4.5 29 412-440 89-117 (321)
25 3izq_1 HBS1P, elongation facto 96.8 0.00059 2E-08 73.7 3.4 102 319-436 43-188 (611)
26 2ewv_A Twitching motility prot 96.7 0.00099 3.4E-08 67.5 4.3 27 416-442 137-163 (372)
27 1htw_A HI0065; nucleotide-bind 96.6 0.0013 4.3E-08 58.8 3.8 24 416-439 34-57 (158)
28 2p5t_B PEZT; postsegregational 96.5 0.0026 8.9E-08 60.4 5.9 28 413-440 30-57 (253)
29 2qm8_A GTPase/ATPase; G protei 96.5 0.0018 6E-08 64.8 4.9 29 414-442 54-82 (337)
30 3aez_A Pantothenate kinase; tr 96.4 0.0019 6.4E-08 64.0 4.2 29 413-441 88-116 (312)
31 1sq5_A Pantothenate kinase; P- 96.4 0.0029 9.8E-08 62.2 5.3 28 413-440 78-105 (308)
32 1odf_A YGR205W, hypothetical 3 96.2 0.0059 2E-07 59.8 6.6 30 412-441 28-57 (290)
33 2gza_A Type IV secretion syste 96.2 0.0015 5.2E-08 65.8 2.2 26 416-441 176-201 (361)
34 3jvv_A Twitching mobility prot 96.2 0.0028 9.6E-08 64.0 3.8 27 416-442 124-150 (356)
35 2x8a_A Nuclear valosin-contain 96.2 0.0013 4.6E-08 63.6 1.4 23 417-439 46-68 (274)
36 2v9p_A Replication protein E1; 96.1 0.0037 1.3E-07 61.9 4.5 36 402-439 115-150 (305)
37 4fcw_A Chaperone protein CLPB; 96.1 0.0099 3.4E-07 57.1 7.4 26 416-441 48-73 (311)
38 1p9r_A General secretion pathw 96.1 0.0024 8.4E-08 65.9 2.9 27 416-442 168-194 (418)
39 2www_A Methylmalonic aciduria 96.0 0.0066 2.3E-07 60.8 5.8 28 415-442 74-101 (349)
40 1jbk_A CLPB protein; beta barr 96.0 0.007 2.4E-07 52.7 5.0 28 414-441 42-69 (195)
41 2p67_A LAO/AO transport system 95.9 0.0057 2E-07 60.9 4.6 30 413-442 54-83 (341)
42 2pt7_A CAG-ALFA; ATPase, prote 95.9 0.0021 7.3E-08 64.0 1.4 26 416-441 172-197 (330)
43 1cr0_A DNA primase/helicase; R 95.9 0.0055 1.9E-07 59.1 4.3 29 416-444 36-64 (296)
44 2hf9_A Probable hydrogenase ni 95.8 0.0074 2.5E-07 55.2 4.8 28 413-440 36-63 (226)
45 2ged_A SR-beta, signal recogni 95.8 0.0088 3E-07 53.0 5.1 25 413-437 46-70 (193)
46 1g6h_A High-affinity branched- 95.8 0.0014 4.9E-08 62.9 -0.1 24 416-439 34-57 (257)
47 2olj_A Amino acid ABC transpor 95.8 0.0015 5E-08 63.3 -0.1 24 416-439 51-74 (263)
48 2w58_A DNAI, primosome compone 95.8 0.0055 1.9E-07 55.3 3.7 28 415-442 54-81 (202)
49 3p32_A Probable GTPase RV1496/ 95.8 0.0065 2.2E-07 60.8 4.5 29 413-441 77-105 (355)
50 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0059 2E-07 53.6 3.7 25 415-439 23-47 (149)
51 1ofh_A ATP-dependent HSL prote 95.8 0.015 5.1E-07 55.5 6.9 27 413-439 48-74 (310)
52 3bos_A Putative DNA replicatio 95.8 0.0094 3.2E-07 54.3 5.2 28 414-441 51-78 (242)
53 2oap_1 GSPE-2, type II secreti 95.7 0.0031 1.1E-07 66.7 2.1 25 416-440 261-285 (511)
54 2kjq_A DNAA-related protein; s 95.7 0.0057 2E-07 53.7 3.4 26 416-441 37-62 (149)
55 2p65_A Hypothetical protein PF 95.7 0.0078 2.7E-07 52.5 4.3 28 414-441 42-69 (187)
56 4b93_A Vesicle-associated memb 95.7 0.14 4.9E-06 46.9 13.0 106 4-121 5-115 (189)
57 1ixz_A ATP-dependent metallopr 95.7 0.0028 9.5E-08 59.7 1.4 25 415-439 49-73 (254)
58 2cbz_A Multidrug resistance-as 95.7 0.0017 5.9E-08 61.6 -0.1 24 416-439 32-55 (237)
59 4g1u_C Hemin import ATP-bindin 95.7 0.00086 3E-08 64.9 -2.3 33 405-439 29-61 (266)
60 3tif_A Uncharacterized ABC tra 95.7 0.004 1.4E-07 59.0 2.3 32 406-439 24-55 (235)
61 1b0u_A Histidine permease; ABC 95.6 0.0045 1.5E-07 59.6 2.4 33 405-439 24-56 (262)
62 1iy2_A ATP-dependent metallopr 95.6 0.0033 1.1E-07 60.2 1.4 23 417-439 75-97 (278)
63 3gfo_A Cobalt import ATP-bindi 95.5 0.0048 1.6E-07 60.1 2.4 35 403-439 24-58 (275)
64 3syl_A Protein CBBX; photosynt 95.5 0.039 1.3E-06 52.9 8.8 27 415-441 67-93 (309)
65 2ixe_A Antigen peptide transpo 95.5 0.0022 7.5E-08 62.2 -0.1 34 404-439 36-69 (271)
66 1ji0_A ABC transporter; ATP bi 95.5 0.0049 1.7E-07 58.4 2.3 33 405-439 24-56 (240)
67 1tq4_A IIGP1, interferon-induc 95.5 0.0057 1.9E-07 63.0 2.9 26 414-439 68-93 (413)
68 2ghi_A Transport protein; mult 95.5 0.0022 7.7E-08 61.7 -0.1 35 403-439 36-70 (260)
69 2nut_C Vesicle-trafficking pro 95.4 0.15 5.2E-06 46.8 12.2 95 1-102 2-103 (196)
70 1sgw_A Putative ABC transporte 95.4 0.005 1.7E-07 57.7 1.8 33 405-439 27-59 (214)
71 1in4_A RUVB, holliday junction 95.4 0.0075 2.6E-07 59.7 3.1 26 414-439 50-75 (334)
72 2zu0_C Probable ATP-dependent 95.3 0.0072 2.5E-07 58.3 2.9 23 416-438 47-69 (267)
73 2pze_A Cystic fibrosis transme 95.3 0.0062 2.1E-07 57.3 2.4 34 404-439 25-58 (229)
74 1sxj_C Activator 1 40 kDa subu 95.3 0.012 4E-07 58.1 4.4 25 415-440 47-71 (340)
75 1vpl_A ABC transporter, ATP-bi 95.3 0.0063 2.2E-07 58.5 2.4 24 416-439 42-65 (256)
76 2chg_A Replication factor C sm 95.3 0.015 5.3E-07 51.7 4.8 24 417-440 40-63 (226)
77 2ihy_A ABC transporter, ATP-bi 95.3 0.0063 2.2E-07 59.2 2.4 24 416-439 48-71 (279)
78 1lv7_A FTSH; alpha/beta domain 95.2 0.018 6.3E-07 54.0 5.4 25 415-439 45-69 (257)
79 2obl_A ESCN; ATPase, hydrolase 95.2 0.0081 2.8E-07 60.4 2.9 25 416-440 72-96 (347)
80 2ff7_A Alpha-hemolysin translo 95.2 0.0071 2.4E-07 57.7 2.3 35 403-439 25-59 (247)
81 2yz2_A Putative ABC transporte 95.2 0.0071 2.4E-07 58.3 2.3 33 405-439 25-57 (266)
82 2nq2_C Hypothetical ABC transp 95.2 0.0075 2.6E-07 57.8 2.4 33 405-439 23-55 (253)
83 2qag_B Septin-6, protein NEDD5 95.1 0.011 3.8E-07 61.2 3.5 35 403-437 30-64 (427)
84 2qz4_A Paraplegin; AAA+, SPG7, 95.1 0.033 1.1E-06 51.9 6.5 28 413-440 37-64 (262)
85 1njg_A DNA polymerase III subu 95.1 0.012 4.1E-07 52.9 3.3 27 415-441 45-71 (250)
86 3cr8_A Sulfate adenylyltranfer 95.0 0.021 7.1E-07 60.9 5.6 28 414-441 368-395 (552)
87 3tui_C Methionine import ATP-b 95.0 0.0046 1.6E-07 62.8 0.4 35 403-439 44-78 (366)
88 2qby_A CDC6 homolog 1, cell di 94.9 0.016 5.4E-07 56.7 4.1 30 413-442 43-72 (386)
89 3hws_A ATP-dependent CLP prote 94.9 0.04 1.4E-06 54.7 7.0 26 414-439 50-75 (363)
90 3d8b_A Fidgetin-like protein 1 94.9 0.041 1.4E-06 54.8 6.9 27 413-439 115-141 (357)
91 1z47_A CYSA, putative ABC-tran 94.8 0.012 4E-07 59.5 2.8 24 416-439 42-65 (355)
92 1sxj_D Activator 1 41 kDa subu 94.8 0.019 6.3E-07 56.0 4.2 28 413-440 56-83 (353)
93 1sxj_E Activator 1 40 kDa subu 94.8 0.014 4.9E-07 57.1 3.3 24 415-439 37-60 (354)
94 2npi_A Protein CLP1; CLP1-PCF1 94.8 0.01 3.4E-07 62.0 2.3 29 416-444 139-167 (460)
95 2bbs_A Cystic fibrosis transme 94.8 0.011 3.8E-07 57.9 2.4 24 416-439 65-88 (290)
96 3a8t_A Adenylate isopentenyltr 94.8 0.01 3.6E-07 59.6 2.2 27 413-439 38-64 (339)
97 3gd7_A Fusion complex of cysti 94.7 0.0064 2.2E-07 62.2 0.6 35 403-439 37-71 (390)
98 2yv5_A YJEQ protein; hydrolase 94.7 0.0079 2.7E-07 59.0 1.1 21 416-436 166-186 (302)
99 3nh6_A ATP-binding cassette SU 94.7 0.0017 5.9E-08 64.3 -3.7 35 403-439 70-104 (306)
100 1v43_A Sugar-binding transport 94.7 0.014 4.8E-07 59.3 2.9 24 416-439 38-61 (372)
101 2rcn_A Probable GTPase ENGC; Y 94.5 0.016 5.3E-07 58.7 2.9 22 416-437 216-237 (358)
102 2axn_A 6-phosphofructo-2-kinas 94.4 0.022 7.7E-07 60.1 4.0 28 413-440 33-60 (520)
103 1fnn_A CDC6P, cell division co 94.4 0.034 1.2E-06 54.7 4.9 25 417-441 46-70 (389)
104 3pxi_A Negative regulator of g 94.4 0.051 1.7E-06 59.7 6.7 26 414-439 519-545 (758)
105 1oxx_K GLCV, glucose, ABC tran 94.3 0.011 3.7E-07 59.7 1.2 27 411-439 29-55 (353)
106 3nwj_A ATSK2; P loop, shikimat 94.3 0.025 8.5E-07 54.2 3.7 24 416-439 49-72 (250)
107 2qby_B CDC6 homolog 3, cell di 94.3 0.043 1.5E-06 54.0 5.5 29 413-441 43-71 (384)
108 3cf0_A Transitional endoplasmi 94.3 0.042 1.4E-06 53.3 5.2 26 414-439 48-73 (301)
109 3t15_A Ribulose bisphosphate c 94.2 0.027 9.4E-07 54.6 3.8 27 413-439 34-60 (293)
110 1svm_A Large T antigen; AAA+ f 94.2 0.03 1E-06 56.9 4.2 26 414-439 168-193 (377)
111 1lw7_A Transcriptional regulat 94.2 0.016 5.4E-07 58.0 2.1 25 416-440 171-195 (365)
112 1pzn_A RAD51, DNA repair and r 94.1 0.096 3.3E-06 52.3 7.6 109 319-439 46-155 (349)
113 2dpy_A FLII, flagellum-specifi 94.1 0.016 5.6E-07 60.0 2.0 25 416-440 158-182 (438)
114 3m6a_A ATP-dependent protease 94.1 0.02 7E-07 60.7 2.7 28 414-441 107-134 (543)
115 2f6r_A COA synthase, bifunctio 94.0 0.03 1E-06 54.1 3.6 26 412-437 72-97 (281)
116 3te6_A Regulatory protein SIR3 94.0 0.037 1.3E-06 55.0 4.3 30 412-441 42-71 (318)
117 3b5x_A Lipid A export ATP-bind 94.0 0.011 3.7E-07 63.1 0.4 37 403-441 359-395 (582)
118 1t9h_A YLOQ, probable GTPase E 93.9 0.0084 2.9E-07 59.4 -0.5 24 416-439 174-197 (307)
119 1u0l_A Probable GTPase ENGC; p 93.9 0.021 7.1E-07 55.8 2.1 23 416-438 170-192 (301)
120 1h65_A Chloroplast outer envel 93.9 0.056 1.9E-06 51.4 5.1 23 414-436 38-60 (270)
121 1bif_A 6-phosphofructo-2-kinas 93.9 0.034 1.1E-06 57.7 3.8 28 413-440 37-64 (469)
122 1d2n_A N-ethylmaleimide-sensit 93.7 0.048 1.6E-06 51.7 4.3 26 414-439 63-88 (272)
123 2v1u_A Cell division control p 93.6 0.035 1.2E-06 54.4 3.2 29 413-441 42-70 (387)
124 1l8q_A Chromosomal replication 93.6 0.035 1.2E-06 54.0 3.2 27 415-441 37-63 (324)
125 1iqp_A RFCS; clamp loader, ext 93.5 0.061 2.1E-06 51.5 4.8 25 416-440 47-71 (327)
126 3j16_B RLI1P; ribosome recycli 93.5 0.017 5.9E-07 62.3 0.9 25 416-440 104-128 (608)
127 1sxj_B Activator 1 37 kDa subu 93.5 0.066 2.3E-06 51.1 4.9 24 417-440 44-67 (323)
128 3b9p_A CG5977-PA, isoform A; A 93.4 0.038 1.3E-06 52.8 3.1 26 414-439 53-78 (297)
129 2r6a_A DNAB helicase, replicat 93.4 0.77 2.6E-05 47.1 13.2 27 416-442 204-230 (454)
130 2qgz_A Helicase loader, putati 93.4 0.049 1.7E-06 53.4 3.8 26 415-440 152-177 (308)
131 3end_A Light-independent proto 93.4 0.055 1.9E-06 52.3 4.1 30 413-442 39-68 (307)
132 1yqt_A RNAse L inhibitor; ATP- 93.3 0.035 1.2E-06 58.9 2.9 24 416-439 48-71 (538)
133 1xwi_A SKD1 protein; VPS4B, AA 93.2 0.073 2.5E-06 52.4 4.9 26 414-439 44-69 (322)
134 3h4m_A Proteasome-activating n 93.2 0.045 1.5E-06 51.9 3.1 27 413-439 49-75 (285)
135 3pxg_A Negative regulator of g 93.1 0.073 2.5E-06 55.2 4.9 28 413-440 199-226 (468)
136 4aby_A DNA repair protein RECN 93.1 0.019 6.6E-07 57.8 0.5 25 415-439 60-84 (415)
137 1tue_A Replication protein E1; 93.0 0.047 1.6E-06 51.3 3.0 25 416-440 59-83 (212)
138 1tf7_A KAIC; homohexamer, hexa 93.0 0.056 1.9E-06 56.8 3.9 33 401-435 26-59 (525)
139 3zvl_A Bifunctional polynucleo 93.0 0.032 1.1E-06 57.0 1.9 27 412-438 255-281 (416)
140 1jr3_A DNA polymerase III subu 93.0 0.08 2.7E-06 51.8 4.7 26 415-440 38-63 (373)
141 3b60_A Lipid A export ATP-bind 92.9 0.01 3.5E-07 63.3 -2.0 25 416-440 370-394 (582)
142 2qag_C Septin-7; cell cycle, c 92.9 0.046 1.6E-06 56.3 3.0 25 413-437 29-53 (418)
143 3uk6_A RUVB-like 2; hexameric 92.9 0.086 2.9E-06 51.8 4.8 26 415-440 70-95 (368)
144 2chq_A Replication factor C sm 92.8 0.074 2.5E-06 50.7 4.0 22 418-439 41-62 (319)
145 3e1s_A Exodeoxyribonuclease V, 92.7 0.064 2.2E-06 57.4 3.9 28 415-442 204-231 (574)
146 3eie_A Vacuolar protein sortin 92.7 0.1 3.4E-06 51.0 5.0 26 415-440 51-76 (322)
147 3ozx_A RNAse L inhibitor; ATP 92.7 0.025 8.4E-07 60.1 0.5 24 416-439 295-318 (538)
148 3pvs_A Replication-associated 92.7 0.087 3E-06 54.5 4.7 30 411-440 46-75 (447)
149 2yl4_A ATP-binding cassette SU 92.6 0.01 3.4E-07 63.6 -2.7 24 416-439 371-394 (595)
150 3qf4_B Uncharacterized ABC tra 92.6 0.011 3.9E-07 63.3 -2.2 24 416-439 382-405 (598)
151 3ux8_A Excinuclease ABC, A sub 92.5 0.023 7.7E-07 61.7 -0.1 28 403-432 34-61 (670)
152 1g41_A Heat shock protein HSLU 92.5 0.15 5.2E-06 52.9 6.2 27 414-440 49-75 (444)
153 2z4s_A Chromosomal replication 92.4 0.064 2.2E-06 55.2 3.3 28 415-442 130-157 (440)
154 1yqt_A RNAse L inhibitor; ATP- 92.4 0.032 1.1E-06 59.1 1.1 24 416-439 313-336 (538)
155 3def_A T7I23.11 protein; chlor 92.3 0.11 3.6E-06 49.3 4.4 24 414-437 35-58 (262)
156 3bk7_A ABC transporter ATP-bin 92.2 0.034 1.2E-06 59.9 1.0 24 416-439 383-406 (607)
157 2qmh_A HPR kinase/phosphorylas 92.2 0.08 2.7E-06 49.5 3.3 24 415-438 34-57 (205)
158 3llm_A ATP-dependent RNA helic 92.2 0.097 3.3E-06 48.6 3.9 23 416-438 77-99 (235)
159 3bk7_A ABC transporter ATP-bin 92.2 0.03 1E-06 60.4 0.4 24 416-439 118-141 (607)
160 2j1l_A RHO-related GTP-binding 92.1 0.078 2.7E-06 48.2 3.1 25 413-437 32-56 (214)
161 4a82_A Cystic fibrosis transme 92.1 0.0095 3.3E-07 63.6 -3.6 24 416-439 368-391 (578)
162 2ce7_A Cell division protein F 91.9 0.13 4.5E-06 53.7 5.0 26 414-439 48-73 (476)
163 3bfv_A CAPA1, CAPB2, membrane 91.8 0.13 4.6E-06 49.3 4.6 29 414-442 81-110 (271)
164 2dhr_A FTSH; AAA+ protein, hex 91.8 0.16 5.4E-06 53.5 5.4 25 415-439 64-88 (499)
165 2r62_A Cell division protease 91.8 0.039 1.4E-06 51.9 0.7 26 415-440 44-69 (268)
166 1um8_A ATP-dependent CLP prote 91.8 0.073 2.5E-06 53.0 2.7 25 415-439 72-96 (376)
167 3upu_A ATP-dependent DNA helic 91.8 0.17 5.7E-06 52.2 5.4 27 417-443 47-73 (459)
168 1qvr_A CLPB protein; coiled co 91.7 0.25 8.5E-06 55.0 7.2 27 414-440 586-613 (854)
169 1r6b_X CLPA protein; AAA+, N-t 91.7 0.36 1.2E-05 52.7 8.3 26 414-439 486-512 (758)
170 3j16_B RLI1P; ribosome recycli 91.6 0.045 1.5E-06 59.1 1.0 24 416-439 379-402 (608)
171 3cio_A ETK, tyrosine-protein k 91.6 0.15 5.3E-06 49.6 4.8 30 413-442 102-132 (299)
172 4b4t_M 26S protease regulatory 91.6 0.17 5.9E-06 52.3 5.4 27 414-440 214-240 (434)
173 3qf4_A ABC transporter, ATP-bi 91.6 0.013 4.6E-07 62.7 -3.1 24 416-439 370-393 (587)
174 4b4t_K 26S protease regulatory 91.6 0.16 5.5E-06 52.4 5.2 27 414-440 205-231 (428)
175 3hr8_A Protein RECA; alpha and 91.6 0.14 4.7E-06 51.7 4.4 27 416-442 62-88 (356)
176 4ag6_A VIRB4 ATPase, type IV s 91.5 0.1 3.5E-06 52.4 3.5 27 415-441 35-61 (392)
177 2zan_A Vacuolar protein sortin 91.4 0.16 5.5E-06 52.2 4.9 26 414-439 166-191 (444)
178 3la6_A Tyrosine-protein kinase 91.4 0.16 5.4E-06 49.3 4.6 30 413-442 90-120 (286)
179 3pfi_A Holliday junction ATP-d 91.1 0.096 3.3E-06 50.9 2.7 26 415-440 55-80 (338)
180 1hqc_A RUVB; extended AAA-ATPa 91.0 0.087 3E-06 50.7 2.2 25 415-439 38-62 (324)
181 3lda_A DNA repair protein RAD5 91.0 0.31 1.1E-05 49.8 6.5 111 315-438 90-201 (400)
182 1sxj_A Activator 1 95 kDa subu 91.0 0.11 3.6E-06 54.6 3.1 26 414-439 76-101 (516)
183 1qvr_A CLPB protein; coiled co 90.8 0.16 5.4E-06 56.6 4.4 28 414-441 190-217 (854)
184 3fkq_A NTRC-like two-domain pr 90.7 0.42 1.5E-05 47.7 7.2 31 412-442 140-171 (373)
185 3ice_A Transcription terminati 90.7 0.21 7.3E-06 51.3 4.9 28 416-443 175-202 (422)
186 2iw3_A Elongation factor 3A; a 90.7 0.11 3.6E-06 59.1 2.8 21 416-436 462-482 (986)
187 1tf7_A KAIC; homohexamer, hexa 90.6 0.15 5.1E-06 53.6 3.8 26 416-441 282-307 (525)
188 2zr9_A Protein RECA, recombina 90.6 0.18 6E-06 50.5 4.1 27 416-442 62-88 (349)
189 4b4t_L 26S protease subunit RP 90.5 0.24 8.2E-06 51.3 5.2 27 414-440 214-240 (437)
190 2vgl_S AP-2 complex subunit si 90.5 1.2 4.3E-05 38.4 9.1 93 1-101 1-97 (142)
191 2qp9_X Vacuolar protein sortin 90.4 0.12 4.2E-06 51.4 2.8 26 415-440 84-109 (355)
192 3vfd_A Spastin; ATPase, microt 90.4 0.23 8E-06 49.7 4.9 25 415-439 148-172 (389)
193 3pxi_A Negative regulator of g 90.4 0.21 7.2E-06 54.7 4.9 28 413-440 199-226 (758)
194 1mky_A Probable GTP-binding pr 90.4 0.14 4.6E-06 52.6 3.2 24 414-437 179-202 (439)
195 4b3f_X DNA-binding protein smu 90.4 0.15 5.3E-06 54.8 3.7 26 417-442 207-232 (646)
196 3ux8_A Excinuclease ABC, A sub 90.3 0.097 3.3E-06 56.7 2.1 20 416-435 349-368 (670)
197 2gk6_A Regulator of nonsense t 90.3 0.15 5E-06 54.9 3.5 25 417-441 197-221 (624)
198 1wb9_A DNA mismatch repair pro 90.2 0.14 4.6E-06 57.1 3.2 24 415-438 607-630 (800)
199 1w36_D RECD, exodeoxyribonucle 90.2 0.16 5.4E-06 54.5 3.7 26 416-441 165-190 (608)
200 1ewq_A DNA mismatch repair pro 90.1 0.13 4.4E-06 57.0 2.9 24 416-439 577-600 (765)
201 3k1j_A LON protease, ATP-depen 90.1 0.13 4.6E-06 54.9 2.9 24 416-439 61-84 (604)
202 2c9o_A RUVB-like 1; hexameric 90.0 0.17 5.6E-06 52.2 3.5 26 415-440 63-88 (456)
203 3u61_B DNA polymerase accessor 90.0 0.14 4.8E-06 49.5 2.8 26 414-439 47-72 (324)
204 2oze_A ORF delta'; para, walke 89.9 0.18 6.1E-06 48.3 3.3 28 415-442 34-64 (298)
205 2qag_A Septin-2, protein NEDD5 89.8 0.1 3.6E-06 52.3 1.7 25 412-436 34-58 (361)
206 2qtf_A Protein HFLX, GTP-bindi 89.8 0.15 5.3E-06 51.2 2.9 22 416-437 180-201 (364)
207 4b4t_J 26S protease regulatory 89.6 0.29 9.8E-06 50.2 4.9 27 414-440 181-207 (405)
208 1w5s_A Origin recognition comp 89.6 0.17 6E-06 50.0 3.2 28 414-441 49-78 (412)
209 2g3y_A GTP-binding protein GEM 89.6 0.18 6.3E-06 46.4 3.1 23 414-436 36-58 (211)
210 2i1q_A DNA repair and recombin 89.6 0.6 2.1E-05 45.4 7.0 104 320-438 15-121 (322)
211 1w63_Q Adapter-related protein 89.5 1.8 6.3E-05 38.2 9.5 93 1-101 1-97 (158)
212 1r6b_X CLPA protein; AAA+, N-t 89.5 0.28 9.7E-06 53.5 5.0 28 413-440 205-232 (758)
213 2wjy_A Regulator of nonsense t 89.5 0.19 6.5E-06 55.9 3.6 25 417-441 373-397 (800)
214 4b4t_I 26S protease regulatory 89.4 0.42 1.4E-05 49.5 5.9 54 380-440 188-241 (437)
215 4b4t_H 26S protease regulatory 89.4 0.31 1.1E-05 50.9 4.9 28 413-440 241-268 (467)
216 3szr_A Interferon-induced GTP- 89.3 0.11 3.8E-06 55.8 1.6 22 417-438 47-68 (608)
217 1udx_A The GTP-binding protein 89.3 0.11 3.7E-06 53.5 1.3 22 416-437 158-179 (416)
218 3fwy_A Light-independent proto 89.1 0.28 9.5E-06 48.4 4.2 29 414-442 47-75 (314)
219 3n70_A Transport activator; si 89.1 0.2 6.8E-06 43.0 2.7 24 416-439 25-48 (145)
220 1x6v_B Bifunctional 3'-phospho 88.8 0.24 8.3E-06 53.6 3.8 27 414-440 51-77 (630)
221 3thx_A DNA mismatch repair pro 88.6 0.21 7.1E-06 56.5 3.1 23 415-437 662-684 (934)
222 1v5w_A DMC1, meiotic recombina 88.5 0.31 1.1E-05 48.3 4.1 81 347-439 64-146 (343)
223 1u0j_A DNA replication protein 88.5 3.5 0.00012 39.8 11.4 110 320-439 4-128 (267)
224 3thx_B DNA mismatch repair pro 88.4 0.14 4.9E-06 57.7 1.7 22 416-437 674-695 (918)
225 2iw3_A Elongation factor 3A; a 88.3 0.11 3.8E-06 58.9 0.8 23 416-438 700-722 (986)
226 1g8p_A Magnesium-chelatase 38 88.3 0.17 5.7E-06 49.1 1.9 23 418-440 48-70 (350)
227 2q6t_A DNAB replication FORK h 88.2 2.7 9.3E-05 42.9 11.1 27 416-442 201-227 (444)
228 3ez2_A Plasmid partition prote 88.1 0.39 1.3E-05 48.2 4.5 30 412-441 105-135 (398)
229 1e9r_A Conjugal transfer prote 88.1 0.31 1.1E-05 49.4 3.8 28 415-442 53-80 (437)
230 2r44_A Uncharacterized protein 87.9 0.16 5.4E-06 49.4 1.5 23 417-439 48-70 (331)
231 3cnl_A YLQF, putative uncharac 87.8 0.27 9.2E-06 47.1 3.0 21 416-436 100-120 (262)
232 1puj_A YLQF, conserved hypothe 87.3 0.37 1.3E-05 46.6 3.6 24 413-436 118-141 (282)
233 1ypw_A Transitional endoplasmi 87.2 0.22 7.5E-06 55.3 2.3 26 414-439 237-262 (806)
234 2qen_A Walker-type ATPase; unk 86.8 0.45 1.5E-05 45.6 4.0 23 416-438 32-54 (350)
235 2xzl_A ATP-dependent helicase 86.8 0.37 1.3E-05 53.5 3.8 25 417-441 377-401 (802)
236 1z6t_A APAF-1, apoptotic prote 86.8 0.35 1.2E-05 50.7 3.5 27 413-439 145-171 (591)
237 4ad8_A DNA repair protein RECN 86.7 0.15 5E-06 53.5 0.5 26 414-439 59-84 (517)
238 3l0i_B RAS-related protein RAB 86.5 0.19 6.4E-06 44.8 1.0 24 413-436 31-54 (199)
239 1u94_A RECA protein, recombina 86.4 0.47 1.6E-05 47.6 4.0 28 415-442 63-90 (356)
240 2a5y_B CED-4; apoptosis; HET: 86.2 0.56 1.9E-05 49.3 4.6 24 414-437 151-174 (549)
241 3eag_A UDP-N-acetylmuramate:L- 86.2 0.36 1.2E-05 47.4 3.0 23 420-442 110-133 (326)
242 3g5u_A MCG1178, multidrug resi 86.2 0.063 2.2E-06 62.7 -2.9 24 416-439 417-440 (1284)
243 1m8p_A Sulfate adenylyltransfe 86.1 0.46 1.6E-05 50.7 3.9 28 414-441 395-422 (573)
244 3co5_A Putative two-component 86.0 0.19 6.6E-06 43.0 0.8 20 417-436 29-48 (143)
245 2gks_A Bifunctional SAT/APS ki 85.9 0.46 1.6E-05 50.4 3.8 28 414-441 371-398 (546)
246 2o8b_B DNA mismatch repair pro 85.8 0.36 1.2E-05 55.1 3.1 22 416-437 790-811 (1022)
247 4f4c_A Multidrug resistance pr 85.8 0.098 3.3E-06 61.2 -1.6 24 416-439 1106-1129(1321)
248 1ypw_A Transitional endoplasmi 85.8 0.2 6.9E-06 55.6 1.0 27 414-440 510-536 (806)
249 1sky_E F1-ATPase, F1-ATP synth 85.7 0.55 1.9E-05 49.1 4.2 28 416-443 152-179 (473)
250 3ez9_A Para; DNA binding, wing 85.4 0.4 1.4E-05 48.3 2.9 29 412-440 108-137 (403)
251 1of1_A Thymidine kinase; trans 85.2 0.25 8.4E-06 50.3 1.2 28 414-441 48-75 (376)
252 1w63_M Adaptor-related protein 85.2 6.9 0.00024 39.8 12.1 113 1-122 2-116 (423)
253 2wkq_A NPH1-1, RAS-related C3 85.1 0.57 1.9E-05 44.8 3.7 24 414-437 154-177 (332)
254 3g5u_A MCG1178, multidrug resi 85.1 0.094 3.2E-06 61.2 -2.2 24 416-439 1060-1083(1284)
255 3o47_A ADP-ribosylation factor 85.0 0.43 1.5E-05 46.9 2.9 24 413-436 163-186 (329)
256 3t34_A Dynamin-related protein 84.1 0.47 1.6E-05 47.0 2.7 21 417-437 36-56 (360)
257 2vf7_A UVRA2, excinuclease ABC 83.9 0.26 8.9E-06 55.1 0.8 24 416-439 524-548 (842)
258 3bh0_A DNAB-like replicative h 83.7 0.66 2.3E-05 45.3 3.5 26 416-441 69-94 (315)
259 3geh_A MNME, tRNA modification 83.4 0.88 3E-05 47.2 4.5 24 415-438 224-247 (462)
260 3lk7_A UDP-N-acetylmuramoylala 83.3 0.56 1.9E-05 48.2 3.0 23 420-442 114-137 (451)
261 2vgl_M AP-2 complex subunit MU 83.3 6.4 0.00022 40.3 10.9 93 1-101 1-95 (435)
262 2z43_A DNA repair and recombin 83.1 0.63 2.2E-05 45.5 3.1 25 416-440 108-132 (324)
263 3bw6_A Synaptobrevin homolog Y 83.1 15 0.00051 31.8 11.7 68 46-119 61-135 (144)
264 3hu3_A Transitional endoplasmi 83.0 0.75 2.6E-05 48.1 3.8 27 413-439 236-262 (489)
265 1g8f_A Sulfate adenylyltransfe 82.7 1.1 3.8E-05 47.2 5.0 28 414-441 394-421 (511)
266 1w78_A FOLC bifunctional prote 82.6 0.63 2.2E-05 47.2 3.0 23 420-442 51-74 (422)
267 1p3d_A UDP-N-acetylmuramate--a 82.4 0.64 2.2E-05 48.0 3.0 23 420-442 120-143 (475)
268 4f4c_A Multidrug resistance pr 82.4 0.14 4.7E-06 60.0 -2.3 24 416-439 445-468 (1321)
269 1xp8_A RECA protein, recombina 82.3 0.96 3.3E-05 45.5 4.1 28 415-442 74-101 (366)
270 2vhj_A Ntpase P4, P4; non- hyd 82.2 0.69 2.4E-05 46.2 3.0 23 416-438 124-146 (331)
271 1e8c_A UDP-N-acetylmuramoylala 82.1 0.67 2.3E-05 48.3 3.0 23 420-442 110-133 (498)
272 3sfz_A APAF-1, apoptotic pepti 82.0 0.63 2.2E-05 52.5 3.0 27 413-439 145-171 (1249)
273 2hjg_A GTP-binding protein ENG 81.9 1.2 4.3E-05 45.3 4.9 24 414-437 174-197 (436)
274 2ygr_A Uvrabc system protein A 81.9 0.51 1.7E-05 53.6 2.1 21 416-436 669-689 (993)
275 3bgw_A DNAB-like replicative h 81.8 5 0.00017 41.2 9.5 27 416-442 198-224 (444)
276 1jbw_A Folylpolyglutamate synt 81.8 0.7 2.4E-05 47.0 3.0 23 420-442 41-64 (428)
277 1gg4_A UDP-N-acetylmuramoylala 81.8 0.58 2E-05 48.1 2.4 23 420-442 102-125 (452)
278 3pih_A Uvrabc system protein A 81.7 0.52 1.8E-05 53.2 2.1 17 416-432 611-627 (916)
279 2f00_A UDP-N-acetylmuramate--L 81.6 0.72 2.5E-05 47.9 3.0 23 420-442 121-144 (491)
280 2x5o_A UDP-N-acetylmuramoylala 81.6 0.73 2.5E-05 47.1 3.0 23 420-442 106-129 (439)
281 1ihu_A Arsenical pump-driving 81.4 1.5 5E-05 46.5 5.4 29 414-442 326-354 (589)
282 3hn7_A UDP-N-acetylmuramate-L- 81.2 0.74 2.5E-05 48.4 3.0 23 420-442 124-147 (524)
283 4hv4_A UDP-N-acetylmuramate--L 81.1 0.76 2.6E-05 47.9 3.0 23 420-442 124-147 (494)
284 2am1_A SP protein, UDP-N-acety 80.9 0.6 2.1E-05 47.9 2.1 23 420-442 102-125 (454)
285 2wtz_A UDP-N-acetylmuramoyl-L- 80.9 0.77 2.6E-05 48.3 3.0 23 420-442 148-171 (535)
286 2qpt_A EH domain-containing pr 80.4 0.89 3.1E-05 48.2 3.3 23 414-436 64-86 (550)
287 1o5z_A Folylpolyglutamate synt 80.2 0.84 2.9E-05 46.8 2.9 23 420-442 54-77 (442)
288 3tjz_C Coatomer subunit zeta-1 80.1 14 0.00048 32.4 10.5 93 1-99 12-105 (153)
289 1j6u_A UDP-N-acetylmuramate-al 80.1 0.85 2.9E-05 47.2 2.9 23 420-442 116-139 (469)
290 2r6f_A Excinuclease ABC subuni 80.0 0.5 1.7E-05 53.5 1.3 21 416-436 651-671 (972)
291 2xau_A PRE-mRNA-splicing facto 79.7 0.96 3.3E-05 50.0 3.4 22 416-437 110-131 (773)
292 3nbx_X ATPase RAVA; AAA+ ATPas 79.2 0.63 2.1E-05 48.9 1.6 24 416-439 42-65 (500)
293 3dpu_A RAB family protein; roc 79.1 1.6 5.4E-05 45.7 4.7 24 414-437 40-63 (535)
294 3b6e_A Interferon-induced heli 78.4 0.78 2.7E-05 40.8 1.8 24 417-440 50-73 (216)
295 4a1f_A DNAB helicase, replicat 77.5 1.7 5.7E-05 43.4 4.0 26 416-441 47-72 (338)
296 2vos_A Folylpolyglutamate synt 76.3 1.3 4.4E-05 46.1 3.0 23 420-442 66-89 (487)
297 3p26_A Elongation factor 1 alp 75.7 2 6.8E-05 44.4 4.2 25 414-438 32-56 (483)
298 1f5n_A Interferon-induced guan 75.4 1.2 4.2E-05 47.7 2.5 22 415-436 38-59 (592)
299 3nrs_A Dihydrofolate:folylpoly 74.1 1.6 5.4E-05 44.7 2.9 22 420-441 54-76 (437)
300 2fz4_A DNA repair protein RAD2 73.7 1.6 5.3E-05 40.7 2.5 21 418-438 111-131 (237)
301 1q57_A DNA primase/helicase; d 73.7 1.4 4.7E-05 45.7 2.4 27 416-442 243-269 (503)
302 3cf2_A TER ATPase, transitiona 73.0 1.7 5.7E-05 48.4 2.9 27 413-439 236-262 (806)
303 3vkg_A Dynein heavy chain, cyt 72.9 8.5 0.00029 48.9 9.4 26 416-441 907-932 (3245)
304 4dcu_A GTP-binding protein ENG 72.9 2.9 9.9E-05 42.8 4.5 24 413-436 193-216 (456)
305 3l0o_A Transcription terminati 72.7 2.7 9.1E-05 43.2 4.1 28 416-443 176-203 (427)
306 2x2e_A Dynamin-1; nitration, h 72.6 1.2 4.2E-05 43.9 1.6 21 416-436 32-52 (353)
307 1rif_A DAR protein, DNA helica 72.4 2.1 7.2E-05 40.4 3.2 25 418-442 131-155 (282)
308 1zcb_A G alpha I/13; GTP-bindi 72.1 2.2 7.5E-05 42.8 3.3 27 413-439 31-57 (362)
309 3czq_A Putative polyphosphate 71.6 1.7 5.8E-05 42.8 2.3 29 413-441 84-112 (304)
310 1vt4_I APAF-1 related killer D 71.5 2.4 8.3E-05 48.8 3.8 25 414-438 149-173 (1221)
311 3gee_A MNME, tRNA modification 71.2 1.4 4.7E-05 45.9 1.6 23 415-437 233-255 (476)
312 2ius_A DNA translocase FTSK; n 70.8 2.3 7.9E-05 44.8 3.3 25 417-441 169-193 (512)
313 1qde_A EIF4A, translation init 70.7 1.8 6.1E-05 39.0 2.1 16 417-432 53-68 (224)
314 3lvq_E ARF-GAP with SH3 domain 70.7 2.3 7.9E-05 43.7 3.2 24 414-437 321-344 (497)
315 3ec1_A YQEH GTPase; atnos1, at 70.5 2 6.9E-05 43.0 2.6 23 416-438 163-185 (369)
316 3h2y_A GTPase family protein; 70.5 2.1 7.3E-05 42.8 2.8 23 416-438 161-183 (368)
317 4akg_A Glutathione S-transfera 70.1 4.7 0.00016 50.5 6.2 26 416-441 924-949 (2695)
318 2gxq_A Heat resistant RNA depe 70.1 2.7 9.2E-05 37.1 3.1 20 417-436 40-59 (207)
319 2oca_A DAR protein, ATP-depend 69.8 2.8 9.5E-05 42.9 3.6 25 417-441 130-154 (510)
320 3cmu_A Protein RECA, recombina 69.5 2.7 9.2E-05 51.2 3.8 29 414-442 1426-1454(2050)
321 1lnz_A SPO0B-associated GTP-bi 69.0 1.7 5.7E-05 43.3 1.7 20 417-436 160-179 (342)
322 3vkw_A Replicase large subunit 68.4 2.2 7.5E-05 44.2 2.4 23 415-437 161-183 (446)
323 3kyq_A YKT6, synaptobrevin hom 68.1 11 0.00039 34.5 7.0 56 40-101 49-108 (199)
324 3f9v_A Minichromosome maintena 67.6 1.3 4.5E-05 47.3 0.6 23 416-438 328-350 (595)
325 3pey_A ATP-dependent RNA helic 67.0 8.4 0.00029 37.0 6.3 25 413-437 42-66 (395)
326 3avx_A Elongation factor TS, e 66.9 11 0.00038 43.8 8.0 24 415-438 296-319 (1289)
327 1ko7_A HPR kinase/phosphatase; 65.9 3.1 0.00011 41.0 2.9 21 416-436 145-165 (314)
328 1xzp_A Probable tRNA modificat 65.9 1.7 5.9E-05 45.3 1.0 23 415-437 243-265 (482)
329 2j69_A Bacterial dynamin-like 65.5 3.4 0.00012 45.0 3.3 23 414-436 68-90 (695)
330 3cf2_A TER ATPase, transitiona 65.3 2.2 7.6E-05 47.4 1.8 27 414-440 510-536 (806)
331 3qq5_A Small GTP-binding prote 64.3 2.6 8.8E-05 43.2 2.0 24 413-436 32-55 (423)
332 1vec_A ATP-dependent RNA helic 63.7 4.4 0.00015 35.7 3.2 18 416-433 41-58 (206)
333 3h1t_A Type I site-specific re 63.5 4.4 0.00015 42.5 3.6 27 416-442 199-225 (590)
334 1hv8_A Putative ATP-dependent 63.3 4.4 0.00015 38.7 3.3 24 416-439 45-68 (367)
335 1ii2_A Phosphoenolpyruvate car 62.4 2.6 8.8E-05 44.6 1.6 18 416-433 214-231 (524)
336 1ytm_A Phosphoenolpyruvate car 62.3 2.6 8.8E-05 44.7 1.6 18 416-433 236-253 (532)
337 4akg_A Glutathione S-transfera 61.9 3.3 0.00011 51.9 2.6 21 416-436 1268-1288(2695)
338 3mca_A HBS1, elongation factor 61.8 4.4 0.00015 43.3 3.3 24 414-437 176-199 (592)
339 2pl3_A Probable ATP-dependent 61.8 5.3 0.00018 36.2 3.5 19 416-434 63-81 (236)
340 3ly5_A ATP-dependent RNA helic 60.7 7.7 0.00026 36.2 4.5 17 417-433 93-109 (262)
341 2va8_A SSO2462, SKI2-type heli 60.6 4.6 0.00016 43.4 3.3 22 416-437 47-68 (715)
342 3cmw_A Protein RECA, recombina 60.6 5.4 0.00018 47.9 4.0 29 414-442 731-759 (1706)
343 3ber_A Probable ATP-dependent 60.5 6 0.0002 36.7 3.6 19 417-435 82-100 (249)
344 1knx_A Probable HPR(Ser) kinas 60.2 4.2 0.00014 40.1 2.6 48 382-435 120-167 (312)
345 3fht_A ATP-dependent RNA helic 59.7 13 0.00046 36.0 6.2 19 414-432 63-81 (412)
346 1t6n_A Probable ATP-dependent 59.4 5.6 0.00019 35.6 3.1 22 417-438 53-74 (220)
347 3rc3_A ATP-dependent RNA helic 59.3 4.4 0.00015 44.1 2.8 15 416-430 156-170 (677)
348 2olr_A Phosphoenolpyruvate car 59.1 3.1 0.00011 44.0 1.5 18 416-433 242-259 (540)
349 1r5b_A Eukaryotic peptide chai 58.6 4.7 0.00016 41.5 2.8 24 414-437 42-65 (467)
350 1wrb_A DJVLGB; RNA helicase, D 58.6 6.9 0.00024 35.9 3.7 20 417-436 62-81 (253)
351 3oiy_A Reverse gyrase helicase 58.5 15 0.00053 36.1 6.5 14 417-430 38-51 (414)
352 2eyq_A TRCF, transcription-rep 58.0 8.8 0.0003 44.2 5.1 29 411-439 620-648 (1151)
353 3vkg_A Dynein heavy chain, cyt 56.6 2.6 8.9E-05 53.4 0.5 20 417-436 1306-1325(3245)
354 2iut_A DNA translocase FTSK; n 56.0 6.4 0.00022 42.1 3.3 26 417-442 216-241 (574)
355 1fx0_B ATP synthase beta chain 55.2 5.8 0.0002 41.6 2.7 28 416-443 166-193 (498)
356 1q0u_A Bstdead; DEAD protein, 55.2 4.4 0.00015 36.4 1.7 20 417-436 43-62 (219)
357 3fmp_B ATP-dependent RNA helic 54.5 17 0.00057 36.7 6.1 18 414-431 130-147 (479)
358 2ck3_D ATP synthase subunit be 54.4 6 0.0002 41.4 2.7 27 416-442 154-180 (482)
359 2z0m_A 337AA long hypothetical 54.2 7 0.00024 36.8 3.0 20 417-436 33-52 (337)
360 3bor_A Human initiation factor 54.1 4.7 0.00016 36.9 1.7 18 417-434 69-86 (237)
361 3q5d_A Atlastin-1; G protein, 54.0 7.8 0.00027 40.0 3.5 25 415-439 67-91 (447)
362 3iuy_A Probable ATP-dependent 54.0 8.2 0.00028 34.7 3.3 17 417-433 59-75 (228)
363 2p6r_A Afuhel308 helicase; pro 53.8 9.2 0.00032 41.1 4.2 18 416-433 41-58 (702)
364 3fe2_A Probable ATP-dependent 53.8 9.1 0.00031 35.0 3.6 18 417-434 68-85 (242)
365 3fho_A ATP-dependent RNA helic 53.3 6.2 0.00021 40.7 2.6 24 414-437 157-180 (508)
366 1gm5_A RECG; helicase, replica 53.2 9.7 0.00033 42.1 4.3 33 406-438 380-412 (780)
367 3dkp_A Probable ATP-dependent 52.5 8.4 0.00029 35.1 3.2 16 417-432 68-83 (245)
368 2c61_A A-type ATP synthase non 51.9 5.5 0.00019 41.5 1.9 26 416-441 153-178 (469)
369 4ido_A Atlastin-1; GTPase, GTP 50.8 10 0.00035 39.4 3.7 25 416-440 68-92 (457)
370 3gqb_B V-type ATP synthase bet 50.3 6.2 0.00021 41.0 2.0 25 416-440 148-172 (464)
371 2i4i_A ATP-dependent RNA helic 50.0 10 0.00035 37.0 3.6 18 416-433 53-70 (417)
372 2zj8_A DNA helicase, putative 49.9 8.8 0.0003 41.3 3.3 17 416-432 40-56 (720)
373 2oxc_A Probable ATP-dependent 49.5 8.6 0.0003 34.8 2.7 17 417-433 63-79 (230)
374 3vr4_D V-type sodium ATPase su 48.9 6.6 0.00022 40.9 1.9 25 416-440 152-176 (465)
375 2fwr_A DNA repair protein RAD2 48.9 9.5 0.00032 38.4 3.1 22 417-438 110-131 (472)
376 1s2m_A Putative ATP-dependent 48.4 10 0.00034 36.9 3.1 21 417-437 60-80 (400)
377 3fmo_B ATP-dependent RNA helic 48.2 23 0.00078 33.8 5.6 17 415-431 131-147 (300)
378 3eiq_A Eukaryotic initiation f 48.0 9 0.00031 37.3 2.7 20 417-436 79-98 (414)
379 3cmw_A Protein RECA, recombina 46.3 13 0.00043 44.8 4.0 28 415-442 383-410 (1706)
380 3vr4_A V-type sodium ATPase ca 45.9 11 0.00036 40.5 3.0 23 416-438 233-255 (600)
381 3cmu_A Protein RECA, recombina 45.8 12 0.00042 45.6 3.8 29 414-442 382-410 (2050)
382 3czp_A Putative polyphosphate 45.6 16 0.00055 38.2 4.3 30 412-441 40-69 (500)
383 3gqb_A V-type ATP synthase alp 45.0 9.7 0.00033 40.6 2.5 23 416-438 222-244 (578)
384 1j3b_A ATP-dependent phosphoen 43.5 7 0.00024 41.3 1.2 17 416-432 226-242 (529)
385 1oyw_A RECQ helicase, ATP-depe 42.4 19 0.00067 37.3 4.4 14 417-430 42-55 (523)
386 1xti_A Probable ATP-dependent 41.9 15 0.0005 35.5 3.1 21 416-436 46-66 (391)
387 4a4z_A Antiviral helicase SKI2 40.4 17 0.00059 41.1 3.8 18 416-433 55-72 (997)
388 3i5x_A ATP-dependent RNA helic 40.4 22 0.00075 36.6 4.4 18 416-433 112-129 (563)
389 4a0g_A Adenosylmethionine-8-am 40.2 15 0.00053 40.7 3.3 28 415-442 34-62 (831)
390 2j0s_A ATP-dependent RNA helic 38.7 15 0.00051 35.9 2.6 20 417-436 76-95 (410)
391 2v1x_A ATP-dependent DNA helic 38.3 41 0.0014 35.6 6.2 15 417-431 61-75 (591)
392 2whx_A Serine protease/ntpase/ 38.0 17 0.0006 38.7 3.2 24 416-439 187-211 (618)
393 1lkx_A Myosin IE heavy chain; 37.4 22 0.00075 38.8 3.9 30 412-441 91-120 (697)
394 4a9a_A Ribosome-interacting GT 36.9 12 0.0004 37.8 1.5 21 416-436 73-93 (376)
395 3mfy_A V-type ATP synthase alp 36.8 11 0.00038 40.2 1.4 23 416-438 228-250 (588)
396 1fuu_A Yeast initiation factor 36.4 11 0.00038 36.3 1.3 17 417-433 60-76 (394)
397 2vf7_A UVRA2, excinuclease ABC 36.4 7.2 0.00025 43.5 -0.1 17 416-432 37-53 (842)
398 3l9o_A ATP-dependent RNA helic 35.9 19 0.00065 41.3 3.2 22 416-437 200-221 (1108)
399 1w9i_A Myosin II heavy chain; 35.2 25 0.00085 38.8 3.9 29 412-440 169-197 (770)
400 2wv9_A Flavivirin protease NS2 34.5 23 0.00077 38.4 3.4 17 415-431 241-257 (673)
401 1w7j_A Myosin VA; motor protei 34.5 26 0.00088 38.9 3.9 29 412-440 153-181 (795)
402 2v26_A Myosin VI; calmodulin-b 33.7 30 0.001 38.2 4.3 29 413-441 138-166 (784)
403 3czp_A Putative polyphosphate 33.7 16 0.00054 38.3 2.0 30 412-441 297-326 (500)
404 1g8x_A Myosin II heavy chain f 33.0 29 0.00098 39.5 4.1 29 412-440 169-197 (1010)
405 4anj_A Unconventional myosin-V 32.9 31 0.0011 39.4 4.3 30 412-441 141-170 (1052)
406 2ycu_A Non muscle myosin 2C, a 32.7 29 0.00099 39.4 4.1 30 412-441 143-172 (995)
407 4db1_A Myosin-7; S1DC, cardiac 32.6 29 0.00099 38.4 3.9 29 412-440 168-196 (783)
408 3sqw_A ATP-dependent RNA helic 30.7 39 0.0014 35.1 4.5 19 416-434 61-79 (579)
409 3zvr_A Dynamin-1; hydrolase, D 30.5 29 0.00099 38.3 3.5 21 416-436 52-72 (772)
410 2dfs_A Myosin-5A; myosin-V, in 30.1 33 0.0011 39.3 3.9 29 412-440 153-181 (1080)
411 1kk8_A Myosin heavy chain, str 29.9 30 0.001 38.5 3.5 30 412-441 166-195 (837)
412 2db3_A ATP-dependent RNA helic 29.7 34 0.0012 34.2 3.7 16 417-432 95-110 (434)
413 4etp_A Kinesin-like protein KA 29.6 58 0.002 33.0 5.3 20 413-432 139-158 (403)
414 3t0q_A AGR253WP; kinesin, alph 29.5 53 0.0018 32.6 4.9 17 416-432 87-103 (349)
415 3rhf_A Putative polyphosphate 29.3 31 0.0011 33.6 3.1 27 414-440 74-100 (289)
416 1ny5_A Transcriptional regulat 28.2 25 0.00087 34.9 2.3 21 417-437 162-182 (387)
417 2r9v_A ATP synthase subunit al 28.2 24 0.00082 37.1 2.2 23 416-438 176-199 (515)
418 4a2q_A RIG-I, retinoic acid in 27.7 35 0.0012 37.2 3.5 25 417-441 265-289 (797)
419 4hkm_A Anthranilate phosphorib 27.6 3.4E+02 0.011 26.6 10.4 95 319-439 8-103 (346)
420 1nh2_B Transcription initiatio 27.4 99 0.0034 22.3 4.7 35 335-369 13-47 (53)
421 1i84_S Smooth muscle myosin he 27.3 29 0.001 40.0 2.9 30 412-441 166-195 (1184)
422 1gku_B Reverse gyrase, TOP-RG; 27.2 26 0.00088 39.9 2.4 15 416-430 72-86 (1054)
423 1f9v_A Kinesin-like protein KA 27.1 61 0.0021 32.1 4.9 20 413-432 83-102 (347)
424 2r6f_A Excinuclease ABC subuni 26.9 14 0.00047 42.0 0.1 17 416-432 45-61 (972)
425 2ygr_A Uvrabc system protein A 26.5 14 0.00048 42.0 0.1 17 416-432 47-63 (993)
426 3r88_A Anthranilate phosphorib 26.5 3.7E+02 0.013 26.7 10.6 94 318-436 27-125 (377)
427 1bg2_A Kinesin; motor protein, 26.1 46 0.0016 32.7 3.7 20 413-432 76-95 (325)
428 1cip_A Protein (guanine nucleo 26.1 28 0.00096 34.5 2.2 23 413-435 30-52 (353)
429 3o8b_A HCV NS3 protease/helica 26.0 36 0.0012 36.9 3.2 18 416-433 233-250 (666)
430 2xgj_A ATP-dependent RNA helic 25.9 40 0.0014 38.2 3.7 16 417-432 103-118 (1010)
431 1goj_A Kinesin, kinesin heavy 25.4 47 0.0016 33.0 3.7 20 413-432 79-98 (355)
432 2rep_A Kinesin-like protein KI 25.4 76 0.0026 31.8 5.2 20 413-432 114-133 (376)
433 1t5c_A CENP-E protein, centrom 25.3 50 0.0017 32.8 3.9 20 413-432 76-95 (349)
434 2ck3_A ATP synthase subunit al 25.2 30 0.001 36.3 2.3 25 416-440 163-188 (510)
435 4ddu_A Reverse gyrase; topoiso 25.1 35 0.0012 39.1 3.0 14 417-430 95-108 (1104)
436 2w00_A HSDR, R.ECOR124I; ATP-b 25.0 37 0.0013 38.7 3.1 25 416-440 301-325 (1038)
437 2qe7_A ATP synthase subunit al 24.9 28 0.00096 36.5 2.0 23 416-438 163-186 (502)
438 2y65_A Kinesin, kinesin heavy 23.6 54 0.0018 32.8 3.7 20 413-432 83-102 (365)
439 3vqt_A RF-3, peptide chain rel 23.4 45 0.0015 35.0 3.3 25 414-438 30-54 (548)
440 2h58_A Kinesin-like protein KI 23.4 40 0.0014 33.2 2.7 20 413-432 79-98 (330)
441 4ehx_A Tetraacyldisaccharide 4 23.0 38 0.0013 33.0 2.4 24 418-441 38-64 (315)
442 3b6u_A Kinesin-like protein KI 22.5 61 0.0021 32.5 3.9 20 413-432 100-119 (372)
443 1ry6_A Internal kinesin; kines 22.5 36 0.0012 34.0 2.2 17 416-432 86-102 (360)
444 2vvg_A Kinesin-2; motor protei 22.3 59 0.002 32.3 3.7 20 413-432 88-107 (350)
445 3cob_A Kinesin heavy chain-lik 22.2 42 0.0014 33.6 2.6 20 413-432 78-97 (369)
446 4a14_A Kinesin, kinesin-like p 22.1 61 0.0021 32.0 3.7 20 413-432 82-101 (344)
447 3gbj_A KIF13B protein; kinesin 22.1 69 0.0023 31.8 4.1 20 413-432 91-110 (354)
448 1fx0_A ATP synthase alpha chai 21.7 29 0.001 36.4 1.4 23 416-438 164-187 (507)
449 3oaa_A ATP synthase subunit al 21.1 32 0.0011 36.1 1.5 23 416-438 163-186 (513)
450 3lre_A Kinesin-like protein KI 21.0 66 0.0023 31.9 3.8 20 413-432 104-123 (355)
451 3dc4_A Kinesin-like protein NO 20.6 64 0.0022 32.0 3.5 20 413-432 93-112 (344)
452 2zfi_A Kinesin-like protein KI 20.6 67 0.0023 32.0 3.7 20 413-432 88-107 (366)
453 2wbe_C Bipolar kinesin KRP-130 20.5 67 0.0023 32.1 3.7 20 413-432 99-118 (373)
454 2nr8_A Kinesin-like protein KI 20.5 72 0.0025 31.7 3.9 20 413-432 102-121 (358)
455 3bfn_A Kinesin-like protein KI 20.4 65 0.0022 32.5 3.6 20 413-432 97-116 (388)
456 1x88_A Kinesin-like protein KI 20.3 70 0.0024 31.8 3.8 18 415-432 89-106 (359)
No 1
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=100.00 E-value=4.3e-46 Score=344.37 Aligned_cols=138 Identities=35% Similarity=0.559 Sum_probs=103.6
Q ss_pred CcceEEEeecCcEEEEeecccCCCCCCCcHHHHHHHhHhhcccCCCceeeccCCCceeeEEEEecccceEEEEEeccccc
Q 013364 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH 80 (444)
Q Consensus 1 MLD~f~IftkgGiVLWs~~~~~~~~~~~pin~LI~~vllEeR~~~~~~~~~~~~d~y~lkw~~~Ne~~LVFVvvYQ~iL~ 80 (444)
|.|+|+|||||||||||++ +.++++++|||+||++||||||+++++|.+ |+|+|||+|+||||||||||||+|||
T Consensus 10 ~~D~~~IfTkGGvVLWs~~-~~~~~~~~~IN~LIr~VlLEER~~~~~y~~----d~ytlkW~l~NEl~LVFVvVYQ~iL~ 84 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWCFQ-GVSDSCTGPVNALIRSVLLQERGGNNSFTH----EALTLKYKLDNQFELVFVVGFQKILT 84 (185)
T ss_dssp SCSEEEEEETTSBEEEEEB-TTTBSCCCHHHHHHHHTGGGC-------CC----CCCEEEEEEETTTTEEEEEEESCGGG
T ss_pred ceeEEEEEeCCeEEEEeec-CCcccccchHHHHHHHhhhccccCCCceeE----cCeEEEEEEeccCCEEEEEEEccccc
Confidence 9999999999999999753 445689999999999999999999999999 99999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCC---------CCcchHHHHHHHHHHHHHHHHHHhhhhhccccccccccccC
Q 013364 81 LLYVDDLLAMMKQSFSEIYDPKRT---------DYSDFDEMFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGG 145 (444)
Q Consensus 81 L~yvD~LL~~vk~~F~~~y~~~~~---------~~~~Fd~~F~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 145 (444)
|+|||+||++|+++|+++|++.+. .+++||++|+++|+++|+.++..+ +..|++|+++.++++
T Consensus 85 L~YiD~LL~~v~~~Fv~~Y~~~L~~~~~~~~~~~~~~Fd~~F~~~l~~~e~~~~~~~--~k~mr~fees~ks~k 156 (185)
T 2fh5_A 85 LTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEESSKIRA--PTTMKKFEDSEKAKK 156 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHHHHHTC--------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHHHHHHHHHHHhhh--HHhhccHhhhhhhhh
Confidence 999999999999999999976521 345899999999999998875433 345899998887643
No 2
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.70 E-value=5.5e-17 Score=163.30 Aligned_cols=117 Identities=32% Similarity=0.496 Sum_probs=99.2
Q ss_pred cCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhH
Q 013364 325 AGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILR 404 (444)
Q Consensus 325 ~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~ 404 (444)
.+...|+++++++++++|+.+|+++||+.+++.+||+.|+..+.++++..+....+.+..++.+.|.++|.+..+++++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 121 (328)
T 3e70_C 42 ILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIE 121 (328)
T ss_dssp CCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCEEECC---CHHHHHHHHHHHHHHSCCSSCCCHHH
T ss_pred HhhccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHhCCccccchhh
Confidence 45678999999999999999999999999999999999999999888877777788999999999999999876565432
Q ss_pred hHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhcC
Q 013364 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDFG 444 (444)
Q Consensus 405 ~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~g 444 (444)
.+ ....+|.+|+||||||+||||++++||.++....|
T Consensus 122 ~~---~~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g 158 (328)
T 3e70_C 122 EI---RKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGF 158 (328)
T ss_dssp HH---HSSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred hc---ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 21 23457899999999999999999999999987654
No 3
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.62 E-value=1.2e-15 Score=151.82 Aligned_cols=120 Identities=22% Similarity=0.330 Sum_probs=94.0
Q ss_pred CCccccchHHHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHH
Q 013364 309 PDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEE 388 (444)
Q Consensus 309 ~~~~~~~~~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~ 388 (444)
+.+++.++. ++...+.|.+.++ +++++++|+++|+++||+.+++.+|++.|+..+.+.++.. .+.++.++.+
T Consensus 7 l~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 78 (302)
T 3b9q_A 7 FSKTRENLA-VIDELLLFWNLAE---TDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKS----GSEIKDALKE 78 (302)
T ss_dssp THHHHHHHT-HHHHHHTTCCGGG---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCCS----HHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHcCCCcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHH
Confidence 344455555 5555555667776 5678999999999999999999999999999988776543 4678899999
Q ss_pred HHHHHcCCCC---cchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhcC
Q 013364 389 ALVRILTPRR---SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDFG 444 (444)
Q Consensus 389 ~L~~iL~p~~---~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~g 444 (444)
.|.++|.+.. ++++ .-.++.+|+||||||+||||+++|||.++....|
T Consensus 79 ~l~~~l~~~~~~~~l~~--------~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g 129 (302)
T 3b9q_A 79 SVLEMLAKKNSKTELQL--------GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT 129 (302)
T ss_dssp HHHHHHCC--CCCSCCC--------CSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCccccccccc--------ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 9999998754 2221 2345789999999999999999999999986544
No 4
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.62 E-value=1.8e-15 Score=157.73 Aligned_cols=120 Identities=18% Similarity=0.280 Sum_probs=101.9
Q ss_pred chHHHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHc
Q 013364 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (444)
Q Consensus 315 ~~~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL 394 (444)
..+.+.|+.+.|...||++++++++.+|+.+|+++||+.+++..+++.++..+.+.++.........+..++.++|.++|
T Consensus 8 ~~l~~~~~~l~~~~~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~~eL~~~L 87 (443)
T 3dm5_A 8 KALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFL 87 (443)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHh
Confidence 44667888999999999999999999999999999999999999999999998877665444456788999999999999
Q ss_pred CCCCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 395 ~p~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.+.... + ...++|+||+|+|++|||||||++|||+||.++
T Consensus 88 ~~~~~~-~-------~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 88 GTEAKP-I-------EIKEKPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp TSSCCC-C-------CCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred cCcccc-c-------ccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 863221 1 123469999999999999999999999999865
No 5
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.62 E-value=2.1e-15 Score=156.98 Aligned_cols=120 Identities=15% Similarity=0.271 Sum_probs=101.9
Q ss_pred HHHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCC
Q 013364 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTP 396 (444)
Q Consensus 317 ~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p 396 (444)
+++.|+.|.|...||++++++++.+|+.+|+++||+.+++..++++|+..+.+..+.......+.+..++.++|.++|.+
T Consensus 6 l~~~~~~l~~~~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L~~ 85 (433)
T 3kl4_A 6 IRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGG 85 (433)
T ss_dssp HHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHhcCc
Confidence 56788899999999999999999999999999999999999999999999887766544345678899999999999987
Q ss_pred CCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 397 ~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
.....+ ...++|.+|+|+|+||||||||++|||++|..+.
T Consensus 86 ~~~~~~-------~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G 125 (433)
T 3kl4_A 86 DKEPNV-------NPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRG 125 (433)
T ss_dssp SSCCCC-------SCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTT
T ss_pred cccccc-------cccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 432211 1234689999999999999999999999998653
No 6
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.61 E-value=1.7e-15 Score=157.76 Aligned_cols=121 Identities=17% Similarity=0.330 Sum_probs=103.5
Q ss_pred chHHHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHc
Q 013364 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (444)
Q Consensus 315 ~~~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL 394 (444)
..|++.|++|.|...||++++++++++++.+|+++||+.+++.+|++.|+..+.+.++.........+..++.++|.++|
T Consensus 7 ~~l~~~~~~~~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (433)
T 2xxa_A 7 DRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAM 86 (433)
T ss_dssp HHHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHh
Confidence 34667899999999999999999999999999999999999999999999999888775544455678889999999999
Q ss_pred CCCCc-chhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 395 TPRRS-IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 395 ~p~~~-~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
.+... +. ...++|++|+|+|++||||||++++||++|.+++
T Consensus 87 ~~~~~~~~--------~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~ 128 (433)
T 2xxa_A 87 GEENQTLN--------LAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKH 128 (433)
T ss_dssp CSSSCCCC--------CCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTS
T ss_pred cccccccc--------ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 86432 21 1235689999999999999999999999998763
No 7
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.57 E-value=9.2e-15 Score=148.81 Aligned_cols=99 Identities=26% Similarity=0.461 Sum_probs=83.6
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCC---cchhhHhHHHhh
Q 013364 334 DLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRR---SIDILRDVHAAK 410 (444)
Q Consensus 334 dl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~---~~d~l~~i~~~~ 410 (444)
++++++++|+++|+++||+.+++.+||+.|+..+.+.++.. .+.++.++.+.|.++|.+.. ++++
T Consensus 85 ~~~~~~~~l~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~l~~~~~~~~l~l-------- 152 (359)
T 2og2_A 85 ETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKS----GSEIKDALKESVLEMLAKKNSKTELQL-------- 152 (359)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCCS----HHHHHHHHHHHHHHHHCCC---CSCCC--------
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHHHhCCcccCCCcce--------
Confidence 47789999999999999999999999999999988876643 46788999999999998754 3321
Q ss_pred hcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhcC
Q 013364 411 EQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDFG 444 (444)
Q Consensus 411 ~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~g 444 (444)
.-.+|.+|+||||||+||||+++|||.+|....|
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G 186 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT 186 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhccccCC
Confidence 2345799999999999999999999999986544
No 8
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.56 E-value=2.1e-14 Score=142.46 Aligned_cols=121 Identities=17% Similarity=0.281 Sum_probs=101.4
Q ss_pred cchHHHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHH
Q 013364 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI 393 (444)
Q Consensus 314 ~~~~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~i 393 (444)
+..|++.|+.+.|.+.|+++++++++++++.+|+++||+.+++.+|++.++..+.+.++.......+.+...+.+.|..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (297)
T 1j8m_F 4 LDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNL 83 (297)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHH
Confidence 34577789999999999999999999999999999999999999999999999888766443344567889999999999
Q ss_pred cCCCC-c-chhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 394 LTPRR-S-IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 394 L~p~~-~-~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
+.+.. . ++ . . .+|.+|+|+|+|||||||++++||.++....
T Consensus 84 ~~~~~~~~i~------~--~-~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g 126 (297)
T 1j8m_F 84 FGGDKEPKVI------P--D-KIPYVIMLVGVQGTGKTTTAGKLAYFYKKKG 126 (297)
T ss_dssp TTCSCCCCCS------C--S-SSSEEEEEECSSCSSTTHHHHHHHHHHHHTT
T ss_pred hccccccccc------c--C-CCCeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 97643 2 22 1 1 2389999999999999999999999997653
No 9
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.55 E-value=1.1e-14 Score=146.01 Aligned_cols=123 Identities=17% Similarity=0.179 Sum_probs=91.7
Q ss_pred CCCccccchHHHHHHHcc-CCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHH
Q 013364 308 KPDAKKTGWFSSMFQSIA-GKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAM 386 (444)
Q Consensus 308 ~~~~~~~~~~~~~~~~l~-g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l 386 (444)
++.+++.++.. .++.+. +.+.++++ ++++|+++|+++||+.+++.+||+.|+.++.+.++.. .|+.++
T Consensus 10 ~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 78 (320)
T 1zu4_A 10 AMLKSAFNFSK-DIKKLSKKYKQADDE----FFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFE------NIKDAL 78 (320)
T ss_dssp HTHHHHHHHHH-HHHHHHHTCCCCSHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCHH------HHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHcCCCCCCHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhHH------HHHHHH
Confidence 34445555544 444444 44788875 7899999999999999999999999999987765532 288999
Q ss_pred HHHHHHHcCCCCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 387 EEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 387 ~~~L~~iL~p~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
.++|.++|.+....+++.++.. ...+|.+|+|+|+||+||||++++||.+|....
T Consensus 79 ~~~l~~~l~~~~~~~~~~~l~~--~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g 133 (320)
T 1zu4_A 79 VESLYQAYTDNDWTNKKYRIDF--KENRLNIFMLVGVNGTGKTTSLAKMANYYAELG 133 (320)
T ss_dssp HHHHHHHHHCSCC----CCCCC--CTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccccccccCccc--cCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 9999999986542211111222 234689999999999999999999999998653
No 10
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.54 E-value=3.4e-14 Score=147.56 Aligned_cols=119 Identities=22% Similarity=0.307 Sum_probs=102.6
Q ss_pred chHHHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHc
Q 013364 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (444)
Q Consensus 315 ~~~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL 394 (444)
..|++.++.|.|...|+++++++++++++.+|+++||+..++.+|++.|+..+.|..+.........|..++.+.|..++
T Consensus 7 ~~l~~~~~~l~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~ 86 (425)
T 2ffh_A 7 ARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEALKEAL 86 (425)
T ss_dssp HHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHHh
Confidence 34667888999999999999999999999999999999999999999999998888775555567789999999999999
Q ss_pred CCCC-cchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 395 TPRR-SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 395 ~p~~-~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
.+.. .+++ . +|.+|+|+|+||+||||++++||.+|....
T Consensus 87 ~~~~~~i~l--------~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g 126 (425)
T 2ffh_A 87 GGEARLPVL--------K--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG 126 (425)
T ss_dssp TSSCCCCCC--------C--SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred CCCcccccC--------C--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 7643 2321 2 689999999999999999999999998653
No 11
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.50 E-value=4.8e-14 Score=140.54 Aligned_cols=109 Identities=24% Similarity=0.445 Sum_probs=83.7
Q ss_pred CccccchHHHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHH
Q 013364 310 DAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEA 389 (444)
Q Consensus 310 ~~~~~~~~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~ 389 (444)
.+++.++..++...+.|. .|+++ ++++|+++|+++||+.+++.+||+.++. . . .. ++.++.+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~-~~~~~----~~~~l~~~L~~~dv~~~~~~~~~~~~~~------~----~-~~-~~~~~~~~ 86 (306)
T 1vma_A 24 QKTKETFFGRVVKLLKGK-KLDDE----TREELEELLIQADVGVETTEYILERLEE------K----D-GD-ALESLKEI 86 (306)
T ss_dssp HHHHHHTHHHHHHHHTTC-CCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHHTT------C----C-SC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC-CCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHh------c----C-HH-HHHHHHHH
Confidence 334445544333333355 88874 7999999999999999999999999965 1 1 23 78899999
Q ss_pred HHHHcCCCCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 390 LVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 390 L~~iL~p~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
|.++|.+..++++ ...+|.+|+|+|+||+||||++++||.+|....
T Consensus 87 l~~~l~~~~~~~~--------~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g 132 (306)
T 1vma_A 87 ILEILNFDTKLNV--------PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG 132 (306)
T ss_dssp HHHHTCSCCCCCC--------CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCcc--------cCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcC
Confidence 9999987543321 234689999999999999999999999998653
No 12
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.49 E-value=4.2e-14 Score=149.08 Aligned_cols=102 Identities=24% Similarity=0.435 Sum_probs=82.2
Q ss_pred CccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCC-cchhhHh
Q 013364 327 KANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRR-SIDILRD 405 (444)
Q Consensus 327 ~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~-~~d~l~~ 405 (444)
.+.|+++ ++++|+.+||.+||+.+++.+||+.|+..+.+..+.. ...++.+|.+.|.++|.+.. .+++
T Consensus 220 ~~~ide~----~l~el~~~Ll~aDv~~~~~~~l~~~l~~~~~~~~~~~----~~~~~~~l~~~l~~~l~~~~~~Isl--- 288 (503)
T 2yhs_A 220 GKKIDDD----LFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRD----AEALYGLLKEEMGEILAKVDEPLNV--- 288 (503)
T ss_dssp TCBCSHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCB----GGGHHHHHHHHHHHHHHTTBCCCCC---
T ss_pred cCCCCHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHhCCCCCCcee---
Confidence 3557754 7999999999999999999999999999887765543 34577888899999997542 2221
Q ss_pred HHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhcC
Q 013364 406 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDFG 444 (444)
Q Consensus 406 i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~g 444 (444)
.-.++.+|+|||+||+||||+|+|||.+|....|
T Consensus 289 -----~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G 322 (503)
T 2yhs_A 289 -----EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGK 322 (503)
T ss_dssp -----CSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred -----eccCCeEEEEECCCcccHHHHHHHHHHHhhhcCC
Confidence 2345799999999999999999999999986544
No 13
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.47 E-value=5e-14 Score=129.13 Aligned_cols=113 Identities=12% Similarity=0.181 Sum_probs=92.8
Q ss_pred CcceEEEeecCcEEEEeecccCCCCCCCcHHHHHHHhHhhcccCCCceeeccCCCceeeEEEEecccceEEEEEeccccc
Q 013364 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH 80 (444)
Q Consensus 1 MLD~f~IftkgGiVLWs~~~~~~~~~~~pin~LI~~vllEeR~~~~~~~~~~~~d~y~lkw~~~Ne~~LVFVvvYQ~iL~ 80 (444)
|++.+++|+|||+|||.++.. ...+..+++.||+.+.. +.+..+|++ ++|+++|..+| ||+||+|+++.+.
T Consensus 44 M~ilYa~VaRG~~VLae~t~~-~gnf~~iak~ll~kl~~--~~~r~s~~~----~~y~fHyl~~n--gl~yl~I~D~~yp 114 (169)
T 2vx8_A 44 MAILFAVVARGTTILAKHAWC-GGNFLEVTEQILAKIPS--ENNKLTYSH----GNYLFHYICQD--RIVYLCITDDDFE 114 (169)
T ss_dssp SCCCEEEEEETTEEEEEEESS-CBSHHHHHHHHHTTSCS--SCEEEEEEE----TTEEEEEEEET--TEEEEEEEETTSC
T ss_pred CceEEEEEEcCCEEEEEeccC-CCCHHHHHHHHHhhCCC--CCCceEEEE----CCEEEEEEEEC--CEEEEEEEccccc
Confidence 999999999999999976433 34566777777777765 344567999 99999999987 9999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCC---CCcchHHHHHHHHHHHHHH
Q 013364 81 LLYVDDLLAMMKQSFSEIYDPKRT---DYSDFDEMFRQLRKEAEAR 123 (444)
Q Consensus 81 L~yvD~LL~~vk~~F~~~y~~~~~---~~~~Fd~~F~~~l~~~e~~ 123 (444)
..++..||++|+.+|...|++... .| .|++.|+.+|++.+..
T Consensus 115 ~r~AF~fLedI~~eF~~~y~~~~~~a~py-sf~~eF~~~Lk~~~~~ 159 (169)
T 2vx8_A 115 RSRAFSFLNEVKKRFQTTYGSRAQTALPY-AMNSEFSSVLAAQLKH 159 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTGGGTCCTT-TTHHHHHHHHSCC---
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhccCCc-chhHHHHHHHHHHHHH
Confidence 999999999999999999986432 34 7999999988776554
No 14
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.47 E-value=2.4e-13 Score=141.54 Aligned_cols=121 Identities=19% Similarity=0.280 Sum_probs=100.1
Q ss_pred cchHHHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHH
Q 013364 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI 393 (444)
Q Consensus 314 ~~~~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~i 393 (444)
+..|++.|+.|.|.+.||++++++++++++.+|+++||+..++.++++.|+....+.++...-.....+...+.+.|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~e~~~~~~~~e~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 84 (432)
T 2v3c_C 5 GENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKL 84 (432)
T ss_dssp HHHHHHHHHHCCSSSCCCSSTTHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHHHHH
Confidence 34566788999999999999999999999999999999999999999999998877654332234556888999999999
Q ss_pred cCCCCc-chhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 394 LTPRRS-IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 394 L~p~~~-~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
+++... +. ...++|.+|+|||++||||||++++||++|.++
T Consensus 85 l~~~~~~~~--------~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 85 LGEEAKKLE--------LNPKKQNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp HCCSCCCCC--------CCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred hCCCCcCcc--------ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 986422 21 123568999999999999999999999999754
No 15
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.47 E-value=4.7e-14 Score=140.38 Aligned_cols=113 Identities=28% Similarity=0.306 Sum_probs=77.1
Q ss_pred HHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCc
Q 013364 320 MFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRS 399 (444)
Q Consensus 320 ~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~ 399 (444)
.+++|.+...+++ ++++++++|+++|+++||+.+++.+||++|+..+. +.++.++.+.|.++|.+...
T Consensus 14 ~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~l~~~~~ 81 (304)
T 1rj9_A 14 TRERLLKAIPWGG-NLEEVLEELEMALLAADVGLSATEEILQEVRASGR-----------KDLKEAVKEKLVGMLEPDER 81 (304)
T ss_dssp --------------CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC-----------SSTTHHHHHHHTTTTCTTCH
T ss_pred HHHHhhcccccch-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhCcccc
Confidence 4444555444777 78999999999999999999999999999987653 24567788999999987543
Q ss_pred chhhHhHHH-----hhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhcC
Q 013364 400 IDILRDVHA-----AKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDFG 444 (444)
Q Consensus 400 ~d~l~~i~~-----~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~g 444 (444)
.|.+..+.. .+..++|.+|+||||||+||||++++||.++....|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g 131 (304)
T 1rj9_A 82 RATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGK 131 (304)
T ss_dssp HHHHHHTTCCCCCCCCCCCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred cccccccccccccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCC
Confidence 110001111 011246789999999999999999999999976543
No 16
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.44 E-value=8.4e-14 Score=147.49 Aligned_cols=118 Identities=23% Similarity=0.366 Sum_probs=97.5
Q ss_pred HHHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCC
Q 013364 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTP 396 (444)
Q Consensus 317 ~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p 396 (444)
|++.|+.|.+...||++++++++.+++.+|+++||+.+++..+++.|+..+.+..+.........+..++.++|.++|.+
T Consensus 10 l~~~~~~l~~~~~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~ 89 (504)
T 2j37_W 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDP 89 (504)
T ss_dssp TTTTTTCCCSCSSCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHHHHHHHHHHhcc
Confidence 34467788888899999999999999999999999999999999999998887766444445567889999999999987
Q ss_pred CCc-chhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 397 RRS-IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 397 ~~~-~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
... +. ....+|.+|+|||++||||||++++||++|.++
T Consensus 90 ~~~~~~--------~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 90 GVKAWT--------PTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp CCCCCC--------CCSS--EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred ccchhc--------cccCCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 532 11 123568999999999999999999999999864
No 17
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.37 E-value=5e-12 Score=125.02 Aligned_cols=118 Identities=23% Similarity=0.303 Sum_probs=96.4
Q ss_pred hHHHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcC
Q 013364 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILT 395 (444)
Q Consensus 316 ~~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~ 395 (444)
.|++.++++.+.+.|+++++.++|++|+..|+.+|+...++..|++++.....|+.........+.+...+.+.|...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (295)
T 1ls1_A 8 RLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALG 87 (295)
T ss_dssp HHHHHHHTTTTSCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHHHC
Confidence 35568888999999999999999999999999999999999999999998877776542222346677788888888886
Q ss_pred CCC-cchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 396 PRR-SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 396 p~~-~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
+.. .++ . . ++.+|+|+|+||+||||++++||.++....
T Consensus 88 ~~~~~i~------~---~-~~~~i~i~g~~G~GKTT~~~~la~~~~~~~ 126 (295)
T 1ls1_A 88 GEARLPV------L---K-DRNLWFLVGLQGSGKTTTAAKLALYYKGKG 126 (295)
T ss_dssp SSCCCCC------C---C-SSEEEEEECCTTTTHHHHHHHHHHHHHHTT
T ss_pred CCCceee------c---C-CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 532 222 1 2 578999999999999999999999998654
No 18
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.35 E-value=1.5e-12 Score=129.07 Aligned_cols=98 Identities=22% Similarity=0.291 Sum_probs=76.4
Q ss_pred hchHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhHHHhhh
Q 013364 333 ADLEPALKALKDRLMTKNVAEEIAEKLCESV-AASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKE 411 (444)
Q Consensus 333 edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v-~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~ 411 (444)
.++++.+++|+..|+++||+.+++.+|++.+ +..+.+... . .+.+..++.+.|.++|.+....++
T Consensus 36 ~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~l~~~l~~~~~~~~--------- 101 (296)
T 2px0_A 36 SVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAGGL---T--EENVVGKLQEILCDMLPSADKWQE--------- 101 (296)
T ss_dssp ---CCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHSSSCC---C--TTTHHHHHHHHHHTTSCCGGGSCC---------
T ss_pred cccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhcccCC---C--HHHHHHHHHHHHHHHhCCcccccc---------
Confidence 3566789999999999999999999999999 566654422 1 256888999999999976533211
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHHHhcC
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIILIDFG 444 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~~g 444 (444)
..++.+|+|||+|||||||++++||.+|....|
T Consensus 102 ~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 102 PIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp CCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 235789999999999999999999999986433
No 19
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=98.10 E-value=4.6e-06 Score=73.17 Aligned_cols=77 Identities=19% Similarity=0.444 Sum_probs=55.2
Q ss_pred CcceEEEeecCcEEEEeecccCCCCCCCcHHHHHHHhHhhcccCC--------Cceeec--------cCCCceeeEEEEe
Q 013364 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGL--------ASFNYD--------SAGAAYTLKWTFH 64 (444)
Q Consensus 1 MLD~f~IftkgGiVLWs~~~~~~~~~~~pin~LI~~vllEeR~~~--------~~~~~~--------~~~d~y~lkw~~~ 64 (444)
|||+|.|||..|=||+.+.-.+-......||++|.+.|..--+-. ..|.+. ...++|+..|...
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 999999999999999975533345566789999999987332110 112111 1227899999999
Q ss_pred cccceEEEEEecc
Q 013364 65 NELGLVFVAVYQR 77 (444)
Q Consensus 65 Ne~~LVFVvvYQ~ 77 (444)
+...|+|||-|-.
T Consensus 81 kQP~LyfVvtyae 93 (158)
T 1nrj_A 81 KQPELYFVVTFAE 93 (158)
T ss_dssp ETTEEEEEEEESS
T ss_pred CCCcEEEEEEecc
Confidence 9999999999965
No 20
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=97.30 E-value=0.0034 Score=57.28 Aligned_cols=103 Identities=13% Similarity=0.229 Sum_probs=76.8
Q ss_pred eEEEeecCcEEEEeecccCCCCCCCcHHHHHHHhHhhcccCC----CceeeccCCCceeeEEEEecccceEEEEEecccc
Q 013364 4 QLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGL----ASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRIL 79 (444)
Q Consensus 4 ~f~IftkgGiVLWs~~~~~~~~~~~pin~LI~~vllEeR~~~----~~~~~~~~~d~y~lkw~~~Ne~~LVFVvvYQ~iL 79 (444)
..+.+.+|.+||..++.. . .....+++.+| +|... .+|.+ ++|+.++...| ||+|+++=.+-.
T Consensus 57 ~Ya~VArg~tiLAE~t~~----~-gnf~~va~~iL--~kip~~~~r~t~~~----~~y~fHyl~~d--gl~yl~i~D~~~ 123 (173)
T 4afi_A 57 LFAVVARGTTILAKHAWC----G-GNFLEVTEQIL--AKIPSENNKLTYSH----GNYLFHYICQD--RIVYLCITDDDF 123 (173)
T ss_dssp EEEEEEETTEEEEEEESS----C-CCHHHHHHHHH--TTSCSSSEEEEEEE----TTEEEEEEEET--TEEEEEEEETTS
T ss_pred EEEEEECCCEEEEEccCC----C-CCHHHHHHHHH--HhCCCCCCeEEEEE----CCEEEEEEEEC--CEEEEEEECCcc
Confidence 356788999999975432 2 33457888877 34322 46888 99999998865 789999988888
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCCC---CCcchHHHHHHHHHHH
Q 013364 80 HLLYVDDLLAMMKQSFSEIYDPKRT---DYSDFDEMFRQLRKEA 120 (444)
Q Consensus 80 ~L~yvD~LL~~vk~~F~~~y~~~~~---~~~~Fd~~F~~~l~~~ 120 (444)
.-.-.=.||++|+.+|...|+.... .| .|...|...|++.
T Consensus 124 ~rr~aF~FLedI~~eF~~~yg~~~~ta~py-a~~~eF~~~L~~~ 166 (173)
T 4afi_A 124 ERSRAFSFLNEVKKRFQTTYGSRAQTALPY-AMNSEFSSVLAAQ 166 (173)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGGTCCTT-TTHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHhchhhhhccCc-chhHHHHHHHHHH
Confidence 7666667899999999999975432 34 7888898888764
No 21
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.18 E-value=0.00027 Score=70.85 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=52.0
Q ss_pred chHHHHHHHHH----------HHHhCCCcHHHHHHHHHHHHHHhc-ccccccccchhHHHHHHHHHHHHHHcCCCC-cch
Q 013364 334 DLEPALKALKD----------RLMTKNVAEEIAEKLCESVAASLE-GKKLASFTRISSIVQAAMEEALVRILTPRR-SID 401 (444)
Q Consensus 334 dl~~~l~~l~~----------~Li~kdVa~~ia~~l~~~v~~~l~-g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~-~~d 401 (444)
+++|.++++.+ .|-..|++...+.++.......+. +.... ..+..+..+...|..++.... ...
T Consensus 73 ~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~l~ 148 (357)
T 2e87_A 73 TLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPN----EIAELRRQFYGRVASVLRDIDDRLR 148 (357)
T ss_dssp GSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHH----HHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666663 444557777777666665544432 22211 123334444444544432111 111
Q ss_pred hhHhHHHh---h-h-cCCCeEEEEEeeCCCChhhHHHHHHH
Q 013364 402 ILRDVHAA---K-E-QRKPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 402 ~l~~i~~~---~-~-~~~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.+...... . . ...+.+|+|||++||||||.+.+|+.
T Consensus 149 ~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 149 YLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp HHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCS
T ss_pred HHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 01111000 0 1 13578999999999999999998864
No 22
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.99 E-value=0.00087 Score=65.42 Aligned_cols=49 Identities=12% Similarity=0.238 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHcCCCCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 379 SSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 379 ~~~v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
...+...+.+.+..+|.... ...+|.+|+|+||+|+||||.+..|+..+
T Consensus 9 ~~~~~~~~~~~~~~~l~~~~------------~~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 9 DKQFENRLNDNLEELIQGKK------------AVESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp HHHHHHHHHHHHHHHHTTCC------------CCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcccc------------CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36677788888888886432 23468999999999999999999998765
No 23
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.95 E-value=0.00047 Score=61.57 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=24.7
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
...++|+||||+||||.+..||..+...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~ 65 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEK 65 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999999988643
No 24
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.89 E-value=0.00062 Score=67.98 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=26.3
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.++|++|.++|+||+||||++.+|+..|.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999999999998875
No 25
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.00059 Score=73.72 Aligned_cols=102 Identities=25% Similarity=0.252 Sum_probs=51.9
Q ss_pred HHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHH-c---
Q 013364 319 SMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI-L--- 394 (444)
Q Consensus 319 ~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~i-L--- 394 (444)
..++.+.+ +++.+|+.+|.+++-.| +.+++.++..+.+++...+.+....+...+.+.+.++ +
T Consensus 43 ~~~~~~~~---~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (611)
T 3izq_1 43 AQLQDYQG---WDNLSLKLALFDNNFDL----------ESTLAELKKTLKKKKTPKKPIAAANGSANVTQKLANISISQQ 109 (611)
T ss_dssp HHHHHHHC---CCSSHHHHHHHHTTTCS----------SHHHHHHHHTTCSSSCC-------------------------
T ss_pred HHHHHhcC---cchhHHHHHHHHhhccH----------HHHHHHHHHHhccccccCCCChHHHHHHHHHHHHHhhccccc
Confidence 34445554 88888777776655444 7888899999998888777777767777777777666 0
Q ss_pred ----------------------------------------CCCCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHH
Q 013364 395 ----------------------------------------TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAK 434 (444)
Q Consensus 395 ----------------------------------------~p~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAK 434 (444)
.|....++...+ .....+..|++||..||||||.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~~k~~lkV~ivG~~n~GKSTLin~ 186 (611)
T 3izq_1 110 RPNDRLPDWLDEEESEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFV---KSALPHLSFVVLGHVDAGKSTLMGR 186 (611)
T ss_dssp ---------------------------------------------------C---CCCCCCCEEEEECCSSSCHHHHHHH
T ss_pred ccchhcccccccccccccccccchhhhhhhhhhhhccccCCCCcchhHHHHH---hccCCceEEEEEECCCCCHHHHHHH
Confidence 011111111000 1123356899999999999999998
Q ss_pred HH
Q 013364 435 VK 436 (444)
Q Consensus 435 LA 436 (444)
|.
T Consensus 187 Ll 188 (611)
T 3izq_1 187 LL 188 (611)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 26
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.70 E-value=0.00099 Score=67.55 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=24.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.+|+++||||+||||++..|+.++...
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 689999999999999999999988754
No 27
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.59 E-value=0.0013 Score=58.84 Aligned_cols=24 Identities=29% Similarity=0.218 Sum_probs=22.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+.-||-.+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 699999999999999999998765
No 28
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.55 E-value=0.0026 Score=60.39 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=24.7
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+|.+|+|+|++|+||||....|+..|.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4589999999999999999999988653
No 29
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.54 E-value=0.0018 Score=64.75 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=25.8
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
+..+|+|+|+||+||||++..|+.++...
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~ 82 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAA 82 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhC
Confidence 45799999999999999999999988654
No 30
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.42 E-value=0.0019 Score=64.01 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=25.6
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.++.+|+++|+||+||||++..|+..+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 35789999999999999999999988753
No 31
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.39 E-value=0.0029 Score=62.15 Aligned_cols=28 Identities=32% Similarity=0.580 Sum_probs=25.1
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+++.+|.++|+||+||||.+..|+..+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999998765
No 32
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.25 E-value=0.0059 Score=59.76 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=27.0
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.++|.+|.++|++|+||||.+..|+..|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 356899999999999999999999998865
No 33
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.21 E-value=0.0015 Score=65.78 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+|+++|+||+||||++.-|+.++..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 58999999999999999999876643
No 34
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.16 E-value=0.0028 Score=63.97 Aligned_cols=27 Identities=33% Similarity=0.332 Sum_probs=24.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.+|+++||||+||||++.-|+.++...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 499999999999999999999888654
No 35
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.15 E-value=0.0013 Score=63.56 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.5
Q ss_pred EEEEEeeCCCChhhHHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
-|+|+||||+||||.+-.||..+
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHc
Confidence 49999999999999999998754
No 36
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.14 E-value=0.0037 Score=61.93 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=28.6
Q ss_pred hhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 402 ~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+|+++....++| .+|+||||||+||||.+.-|+.++
T Consensus 115 vL~~vsl~i~~G--e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLKGIPKK--NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHTCTTC--SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccceEEecCC--CEEEEECCCCCcHHHHHHHHhhhc
Confidence 455555544454 699999999999999999999876
No 37
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.12 E-value=0.0099 Score=57.09 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=23.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
..|+|+|++|+||||.+..||..+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 48999999999999999999988743
No 38
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.06 E-value=0.0024 Score=65.85 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=23.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.+|+|+||||+||||++.-|+.++...
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 589999999999999999999887543
No 39
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.01 E-value=0.0066 Score=60.79 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=25.1
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
..+|+|+|++||||||++-.|+.++...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 5799999999999999999999887643
No 40
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.95 E-value=0.007 Score=52.68 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.3
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+..|+|+|+.|+||||.+..+|..+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567899999999999999999988754
No 41
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.89 E-value=0.0057 Score=60.91 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=26.2
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
++..+|+++|++|+||||++..|+..+...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 356899999999999999999999888643
No 42
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.88 E-value=0.0021 Score=64.03 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+|+++|+||+||||++.-|+.++..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 48999999999999999998876543
No 43
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.87 E-value=0.0055 Score=59.14 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=25.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHhcC
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILIDFG 444 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~~g 444 (444)
.+++++|+||+||||.+-.||..+....|
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 69999999999999999999998876533
No 44
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.83 E-value=0.0074 Score=55.19 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=24.7
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.++++|+|||..||||||.+..|+..+.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3568999999999999999999998763
No 45
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.0088 Score=52.98 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=21.9
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.++..|+|||..||||||.+..|+.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3467999999999999999998875
No 46
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.82 E-value=0.0014 Score=62.86 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++||||+||||.+--||-.+
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 699999999999999998887544
No 47
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.80 E-value=0.0015 Score=63.30 Aligned_cols=24 Identities=46% Similarity=0.566 Sum_probs=21.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++||||+||||.+--||-.+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 699999999999999998887543
No 48
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.80 E-value=0.0055 Score=55.34 Aligned_cols=28 Identities=25% Similarity=0.169 Sum_probs=24.6
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
|..|+|+|++|+||||.+..||..+..+
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999999888643
No 49
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.77 E-value=0.0065 Score=60.77 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=26.0
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
+++.+|+|+|+.||||||++.+||..|..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999998754
No 50
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.77 E-value=0.0059 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.7
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
|.+.+++|+||+||||.+--|++-|
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998765
No 51
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.76 E-value=0.015 Score=55.48 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=23.7
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..|..|+|+|+.|+||||.+..||..+
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999999876
No 52
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.76 E-value=0.0094 Score=54.32 Aligned_cols=28 Identities=7% Similarity=-0.072 Sum_probs=24.7
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+..|+|+||+|+||||.+..||..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999988764
No 53
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.74 E-value=0.0031 Score=66.69 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=22.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+|+|+|+||+||||++.-|+.++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999887654
No 54
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.73 E-value=0.0057 Score=53.72 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=23.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+++|+|+||+||||.+..||..+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999988754
No 55
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.72 E-value=0.0078 Score=52.49 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=24.1
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+..|+|+|+.|+||||.+..+|..+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3567899999999999999999988754
No 56
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=95.71 E-value=0.14 Score=46.90 Aligned_cols=106 Identities=11% Similarity=0.162 Sum_probs=71.0
Q ss_pred eEEEeecCcEEEEeecccCCCCCCCcHHHHHHHhHhhcccCC---CceeeccCCCceeeEEEEecccceEEEEEeccccc
Q 013364 4 QLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGL---ASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH 80 (444)
Q Consensus 4 ~f~IftkgGiVLWs~~~~~~~~~~~pin~LI~~vllEeR~~~---~~~~~~~~~d~y~lkw~~~Ne~~LVFVvvYQ~iL~ 80 (444)
.++.+.+|++||=.++.. . .-...+++.+ |+..... .+|++ ++|..+|..++ ||+|+++=-+-..
T Consensus 5 lYa~VArg~~iLae~t~~----~-gnf~~ia~~i-L~kip~~~~k~s~~~----~~y~fHyl~~~--gl~yl~i~d~~yp 72 (189)
T 4b93_A 5 LFAVVARGTTILAKHAWC----G-GNFLEVTEQI-LAKIPSENNKLTYSH----GNYLFHYICQD--RIVYLCITDDDFE 72 (189)
T ss_dssp EEEEEEETTEEEEEEESS----E-ECHHHHHHHH-HTTCCSSSEEEEEEE----TTEEEEEEEET--TEEEEEEEETTSC
T ss_pred EEEEEEeCCEEEEeCCCC----C-CCHHHHHHHH-HHhCCCCCCeEEEEE----CCEEEEEEEeC--CeEEEEEEcCccC
Confidence 356778999999764322 1 2244555554 4444332 36888 99999987665 7999999777777
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCC--CCcchHHHHHHHHHHHH
Q 013364 81 LLYVDDLLAMMKQSFSEIYDPKRT--DYSDFDEMFRQLRKEAE 121 (444)
Q Consensus 81 L~yvD~LL~~vk~~F~~~y~~~~~--~~~~Fd~~F~~~l~~~e 121 (444)
-.-.=.||+.|+.+|...|++... .-..|...|...|++.-
T Consensus 73 ~r~af~fL~~i~~eF~~~~~~~~~~~~~~~~~~~f~~~l~~~~ 115 (189)
T 4b93_A 73 RSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQL 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccccccCCccccchhhHHHHHHH
Confidence 666667888899999999976532 11246666766665543
No 57
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.71 E-value=0.0028 Score=59.66 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=21.5
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
|.-|+|+||||+||||.+..||..+
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3349999999999999999998765
No 58
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.70 E-value=0.0017 Score=61.56 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--|+-.+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 699999999999999998887544
No 59
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.68 E-value=0.00086 Score=64.92 Aligned_cols=33 Identities=33% Similarity=0.377 Sum_probs=24.6
Q ss_pred hHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 405 ~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
++.....+| .++++||+||+||||.+--||-.+
T Consensus 29 ~vsl~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 29 DVSLHIASG--EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEEEETT--CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred eeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCC
Confidence 333333444 699999999999999998887543
No 60
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.67 E-value=0.004 Score=58.97 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=24.4
Q ss_pred HHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 406 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 406 i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+.....+| .++++|||||+||||.+--|+-.+
T Consensus 24 isl~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 24 VNLNIKEG--EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECTT--CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEEEcCC--CEEEEECCCCCcHHHHHHHHhcCC
Confidence 33333455 699999999999999998887543
No 61
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.59 E-value=0.0045 Score=59.63 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=24.7
Q ss_pred hHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 405 ~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
++.....+| .+++++||||+||||.+--||-.+
T Consensus 24 ~vsl~i~~G--e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 24 GVSLQARAG--DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCC
Confidence 333333444 699999999999999998887543
No 62
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.57 E-value=0.0033 Score=60.20 Aligned_cols=23 Identities=35% Similarity=0.322 Sum_probs=20.7
Q ss_pred EEEEEeeCCCChhhHHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
-|+|+||||+||||.+..||..+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 39999999999999999998765
No 63
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.53 E-value=0.0048 Score=60.06 Aligned_cols=35 Identities=31% Similarity=0.456 Sum_probs=25.7
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
|++|.....+| .+++++||||+||||.+--|+-.+
T Consensus 24 L~~isl~i~~G--e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 24 LKGINMNIKRG--EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEEEEEETT--SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCC
Confidence 33444434455 699999999999999998887543
No 64
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.52 E-value=0.039 Score=52.87 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.9
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
+..|+|+||.|+||||.+..||..+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999988754
No 65
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.51 E-value=0.0022 Score=62.15 Aligned_cols=34 Identities=29% Similarity=0.298 Sum_probs=25.0
Q ss_pred HhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 404 ~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.++.....+| .+++++|+||+||||.+--||-.+
T Consensus 36 ~~vsl~i~~G--e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 36 QGLTFTLYPG--KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCC
Confidence 3343333444 699999999999999998887544
No 66
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.51 E-value=0.0049 Score=58.44 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=24.6
Q ss_pred hHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 405 ~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
++.....+| .+++++||||+||||.+--||-.+
T Consensus 24 ~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 24 GIDLKVPRG--QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCC
Confidence 333333444 699999999999999998887543
No 67
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.50 E-value=0.0057 Score=63.05 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.1
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+.+|+|+|+||+||||+|-.|+-.+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 35699999999999999999887543
No 68
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.50 E-value=0.0022 Score=61.67 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=25.6
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+.++.....+| .+++++|+||+||||.+.-|+-.+
T Consensus 36 l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 36 LKSINFFIPSG--TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEeeEEEECCC--CEEEEECCCCCCHHHHHHHHhccC
Confidence 33443333444 699999999999999998887543
No 69
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=95.45 E-value=0.15 Score=46.81 Aligned_cols=95 Identities=14% Similarity=0.172 Sum_probs=62.2
Q ss_pred CcceEEEeecC--cEEEEeecccCCC--CCCCcHHHHHHHhHhhccc---CCCceeeccCCCceeeEEEEecccceEEEE
Q 013364 1 MLEQLLIFTRG--GLILWTCKELGNA--LKGSPIDTLIRSCLLEERS---GLASFNYDSAGAAYTLKWTFHNELGLVFVA 73 (444)
Q Consensus 1 MLD~f~Iftkg--GiVLWs~~~~~~~--~~~~pin~LI~~vllEeR~---~~~~~~~~~~~d~y~lkw~~~Ne~~LVFVv 73 (444)
||- ++.+.+| |+||=........ -....+...++.+|=.=.. ...+|.+ ++|..+|...| ||+|++
T Consensus 2 Mi~-ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~----~~y~fhy~~~~--gl~~l~ 74 (196)
T 2nut_C 2 MVL-LTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEA----GAMTFHYIIEQ--GVCYLV 74 (196)
T ss_dssp CCC-CEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEE----TTEEEEEEEET--TEEEEE
T ss_pred ceE-EEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEe----CCEEEEEEeCC--CeEEEE
Confidence 664 4555888 9999753321100 0012355666666632211 2246888 99999977754 788999
Q ss_pred EeccccchhhHHHHHHHHHHHHHHhcCCC
Q 013364 74 VYQRILHLLYVDDLLAMMKQSFSEIYDPK 102 (444)
Q Consensus 74 vYQ~iL~L~yvD~LL~~vk~~F~~~y~~~ 102 (444)
+--.-..-...=.||+.|+.+|...|+..
T Consensus 75 i~d~~yp~r~af~fL~~i~~~F~~~~~~~ 103 (196)
T 2nut_C 75 LCEAAFPKKLAFAYLEDLHSEFDEQHGKK 103 (196)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEcCCcchHHHHHHHHHHHHHHHHhccch
Confidence 87777776667778889999999999753
No 70
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.37 E-value=0.005 Score=57.71 Aligned_cols=33 Identities=33% Similarity=0.500 Sum_probs=24.3
Q ss_pred hHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 405 ~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
++.....+| .+++++||||+||||.+--||-.+
T Consensus 27 ~vsl~i~~G--e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 27 RITMTIEKG--NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEEEEETT--CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCC
Confidence 333333444 589999999999999998887543
No 71
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.35 E-value=0.0075 Score=59.65 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=23.1
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.|..++|+||||+||||.+-.||..+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 45789999999999999999999876
No 72
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.34 E-value=0.0072 Score=58.33 Aligned_cols=23 Identities=39% Similarity=0.322 Sum_probs=20.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.+++++|+||+||||.+--||-.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 69999999999999999888754
No 73
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.33 E-value=0.0062 Score=57.32 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=25.4
Q ss_pred HhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 404 ~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.++.....+| .+++++||||+||||.+.-||-.+
T Consensus 25 ~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 25 KDINFKIERG--QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCC
Confidence 3343334455 699999999999999998887544
No 74
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.33 E-value=0.012 Score=58.06 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=22.3
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
|. ++|+||+|+||||++-.||..+.
T Consensus 47 ~~-~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 47 PH-LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred ce-EEEECCCCCCHHHHHHHHHHHHc
Confidence 44 89999999999999999998864
No 75
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.31 E-value=0.0063 Score=58.51 Aligned_cols=24 Identities=33% Similarity=0.582 Sum_probs=20.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++||||+||||.+--||-.+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 699999999999999998887543
No 76
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.30 E-value=0.015 Score=51.69 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.6
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.++|+|+.|+||||.+..+|..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 499999999999999999998764
No 77
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.30 E-value=0.0063 Score=59.23 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 599999999999999998887544
No 78
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.25 E-value=0.018 Score=54.03 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.2
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
|.-|+|+||+|+||||.+..||..+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 5569999999999999999998765
No 79
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.21 E-value=0.0081 Score=60.36 Aligned_cols=25 Identities=28% Similarity=0.133 Sum_probs=22.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.++.++|+||+||||++..||.++.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6999999999999999999998753
No 80
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.20 E-value=0.0071 Score=57.71 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=25.7
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+.++.....+| .+++++|+||+||||.+--|+-.+
T Consensus 25 l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 25 LDNINLSIKQG--EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCC
Confidence 33443334454 699999999999999998887544
No 81
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.19 E-value=0.0071 Score=58.27 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=24.5
Q ss_pred hHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 405 ~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
++.....+| .+++++|+||+||||.+--||-.+
T Consensus 25 ~vsl~i~~G--e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 25 NVSLVINEG--ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCC
Confidence 333333444 699999999999999998887543
No 82
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.18 E-value=0.0075 Score=57.79 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=24.8
Q ss_pred hHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 405 ~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
++.....+| .+++++|+||+||||.+--||-.+
T Consensus 23 ~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 23 QLNFDLNKG--DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEEEETT--CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEEECCC--CEEEEECCCCCCHHHHHHHHhCCC
Confidence 333333455 699999999999999998887544
No 83
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.08 E-value=0.011 Score=61.17 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=24.9
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHH
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
+.++.....+|....|++||+||+||||.+--|+-
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 34454444555433499999999999999988874
No 84
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.08 E-value=0.033 Score=51.87 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=23.9
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..|..|+|+|+.|+||||.+..||..+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3467899999999999999999988653
No 85
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.07 E-value=0.012 Score=52.92 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=23.8
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
|..++|+|+.|+||||.+..+|..+..
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 568999999999999999999987753
No 86
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.05 E-value=0.021 Score=60.95 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=24.6
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
+..+|+|+|+||+||||.+..||..|..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3579999999999999999999988763
No 87
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.00 E-value=0.0046 Score=62.80 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=26.0
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
|++|.....+| .++++||+||+||||.+..|+-.+
T Consensus 44 L~~vsl~i~~G--ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 44 LNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEeeEEEEcCC--CEEEEEcCCCchHHHHHHHHhcCC
Confidence 44444444444 699999999999999998887543
No 88
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.94 E-value=0.016 Score=56.71 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=25.7
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
+.+..|+|+|++|+||||.+..++..+...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 456799999999999999999999877653
No 89
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.94 E-value=0.04 Score=54.75 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=22.5
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+..|+|+||+|+||||.+..||..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999988888765
No 90
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.87 E-value=0.041 Score=54.84 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=23.6
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..|..|+|+|+.|+||||.+..||..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999998765
No 91
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.85 E-value=0.012 Score=59.55 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++||||+||||+|-.||-.+
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 699999999999999999988544
No 92
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.84 E-value=0.019 Score=56.01 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=23.3
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+++..++|.||+|+||||.+-.||..+.
T Consensus 56 ~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 56 ANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3333489999999999999999998875
No 93
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.80 E-value=0.014 Score=57.11 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.4
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
|. ++|+||+|+||||++-.||..+
T Consensus 37 ~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 37 PH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHHHHH
Confidence 55 9999999999999999999854
No 94
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.01 Score=61.97 Aligned_cols=29 Identities=24% Similarity=0.079 Sum_probs=24.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHhcC
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILIDFG 444 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~~g 444 (444)
.++++||+||+||||.+--||-++....|
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 48999999999999999999988765443
No 95
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.79 E-value=0.011 Score=57.91 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--|+-.+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 699999999999999998887543
No 96
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.76 E-value=0.01 Score=59.59 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.5
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.++.+|+++||+||||||..-.||..|
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence 356799999999999999999998754
No 97
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.72 E-value=0.0064 Score=62.19 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=25.8
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
|++|.....+| .+++++||||+||||++-.||-++
T Consensus 37 L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 37 LENISFSISPG--QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred eeceeEEEcCC--CEEEEECCCCChHHHHHHHHhCCC
Confidence 33443333444 699999999999999999888644
No 98
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.68 E-value=0.0079 Score=58.98 Aligned_cols=21 Identities=33% Similarity=0.786 Sum_probs=19.9
Q ss_pred eEEEEEeeCCCChhhHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA 436 (444)
.+++|+|+|||||||.|-.|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 599999999999999999988
No 99
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.66 E-value=0.0017 Score=64.25 Aligned_cols=35 Identities=31% Similarity=0.329 Sum_probs=25.7
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
|.+|.....+| .++++||+||+||||.+.-|+.++
T Consensus 70 L~~isl~i~~G--e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 70 LQDVSFTVMPG--QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEEEEECTT--CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred eeeeeEEEcCC--CEEEEECCCCchHHHHHHHHHcCC
Confidence 33443333344 699999999999999998887654
No 100
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.66 E-value=0.014 Score=59.31 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++||||+||||+|-.||-.+
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 699999999999999999988544
No 101
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.53 E-value=0.016 Score=58.69 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=19.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.+++|+|+|||||||.|-.|+-
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 5899999999999999988874
No 102
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.45 E-value=0.022 Score=60.15 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=25.6
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..|.+|+|||+.|+||||...+||.+|.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999999874
No 103
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.38 E-value=0.034 Score=54.68 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.6
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.++|+|++|+||||.+..++..+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999987643
No 104
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.38 E-value=0.051 Score=59.65 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=23.0
Q ss_pred CCe-EEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPY-VVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~-vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+|. .|+|+||+|||||+.+..||..+
T Consensus 519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 519 RPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp SCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 454 79999999999999999999877
No 105
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.33 E-value=0.011 Score=59.65 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.0
Q ss_pred hcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 411 EQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 411 ~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+| .+++++||||+||||+|-.||-.+
T Consensus 29 ~~G--e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENG--ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTT--CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCC--CEEEEECCCCCcHHHHHHHHhCCC
Confidence 445 699999999999999999988654
No 106
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.33 E-value=0.025 Score=54.18 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+|+|+|++|+||||.+..||..|
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999998755
No 107
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.32 E-value=0.043 Score=54.04 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=25.4
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
+.|..|+|+||.|+||||.+..+|..+..
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34679999999999999999999988754
No 108
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.26 E-value=0.042 Score=53.29 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=23.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.|..|+|+||+|+||||.+-.||..+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 109
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.24 E-value=0.027 Score=54.63 Aligned_cols=27 Identities=26% Similarity=0.285 Sum_probs=24.0
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..|..++|.||.|+|||+.+..||..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999999999999999876
No 110
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.23 E-value=0.03 Score=56.92 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=22.7
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+.+|+++||+|+||||.+..||..+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34699999999999999999998754
No 111
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.22 E-value=0.016 Score=57.98 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..+++||+||+||||.+..||-.+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998764
No 112
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.12 E-value=0.096 Score=52.32 Aligned_cols=109 Identities=10% Similarity=0.109 Sum_probs=57.4
Q ss_pred HHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCC
Q 013364 319 SMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRR 398 (444)
Q Consensus 319 ~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~ 398 (444)
.....|.....-|-+++. ...-++..-.+++...-+.++++.+...+.. +.|.+. ..+.+.. .. ...++ .
T Consensus 46 ~~~~kL~~ag~~t~~~~~--~~~~~~L~~~~~~s~~~~~~~l~~~~~~~~~---~~~~~~-~~~~~~~-~~-~~~is-T- 115 (349)
T 1pzn_A 46 ATAEKLREAGYDTLEAIA--VASPIELKEVAGISEGTALKIIQAARKAANL---GTFMRA-DEYLKKR-AT-IGRIS-T- 115 (349)
T ss_dssp HHHHHHHTTTCCSHHHHH--TCCHHHHHHHHCCCHHHHHHHHHHHHHHCST---TSCEEH-HHHHHHH-HT-CCEEC-C-
T ss_pred HHHHHHHHcCCCcHHHHH--hCCHHHHHhhcCCCHHHHHHHHHHHhhhccc---cCCccH-HHHHhhh-cc-CCeec-C-
Confidence 345555544444544431 1111222334788888899999988776532 134332 2222111 11 11121 1
Q ss_pred cchhhHhHH-HhhhcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 399 SIDILRDVH-AAKEQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 399 ~~d~l~~i~-~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+.-|..+. ..... -.++.++|+||+||||.+--||..+
T Consensus 116 G~~~LD~lL~ggi~~--G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 116 GSKSLDKLLGGGIET--QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SCHHHHHHHTSSEES--SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCHHHHHHhcCCCCC--CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 122222221 11122 3799999999999999999998875
No 113
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.11 E-value=0.016 Score=59.96 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=22.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+||+||||.+.-||.++.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcccC
Confidence 6999999999999999999998753
No 114
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.07 E-value=0.02 Score=60.68 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=24.1
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
++.+++|+||+|+||||.+-.||..+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3569999999999999999999987743
No 115
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.05 E-value=0.03 Score=54.15 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=23.1
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.++|++|+|+|+.|+||||.+..|+.
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999998883
No 116
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.02 E-value=0.037 Score=55.03 Aligned_cols=30 Identities=7% Similarity=0.010 Sum_probs=26.8
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.++|..|++.||.|+|||+++-.++.-|..
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456889999999999999999999998864
No 117
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.00 E-value=0.011 Score=63.15 Aligned_cols=37 Identities=30% Similarity=0.260 Sum_probs=27.1
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
++++....++| .++++||+||+||||.+.-|+-.+.-
T Consensus 359 l~~i~l~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 359 LSHVSFSIPQG--KTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred cccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 44444333344 58999999999999999988876543
No 118
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.94 E-value=0.0084 Score=59.37 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=20.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++|+|+|||||||.|-.|+-.+
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 599999999999999999887544
No 119
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.88 E-value=0.021 Score=55.84 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.+++|+|+|||||||+|-.|+-.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 58999999999999999888753
No 120
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.87 E-value=0.056 Score=51.44 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=20.7
Q ss_pred CCeEEEEEeeCCCChhhHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA 436 (444)
++..|++||..||||||.+-.|+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~ 60 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSII 60 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHh
Confidence 46799999999999999998876
No 121
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.87 E-value=0.034 Score=57.68 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=24.9
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+|.+|+|||+.|+||||...+||.+|.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999999999998864
No 122
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.72 E-value=0.048 Score=51.66 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=23.1
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.|..|+|+||.|+||||.+..||..+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 46789999999999999999998864
No 123
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.59 E-value=0.035 Score=54.38 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=25.4
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
+.+..|+|+||.|+||||.+..++..+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999988754
No 124
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.58 E-value=0.035 Score=54.04 Aligned_cols=27 Identities=19% Similarity=0.082 Sum_probs=23.8
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
+..++|+||+|+||||.+-.||..+..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 457999999999999999999988754
No 125
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.54 E-value=0.061 Score=51.51 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..++|.||.|+||||.+..+|..+.
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3499999999999999999998763
No 126
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.52 E-value=0.017 Score=62.27 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=21.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.++.+|||||+||||.+--|+-.+.
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCC
Confidence 5999999999999999988876543
No 127
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.49 E-value=0.066 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=21.7
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.++|+|+.|+||||.+..+|..+.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 399999999999999999998874
No 128
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.44 E-value=0.038 Score=52.83 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=22.9
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.|..|+|+||+|+||||.+-.||..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998765
No 129
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.43 E-value=0.77 Score=47.15 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=24.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.+|+++|++|+||||.+-.||..+..+
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~ 230 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATK 230 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 699999999999999999999987654
No 130
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.36 E-value=0.049 Score=53.44 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=23.9
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+..|+|.|++|||||+.+..||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999887
No 131
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.35 E-value=0.055 Score=52.27 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=26.4
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.++++|+|+|--||||||+.+-||+.|.+.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 357899999999999999999999999764
No 132
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.32 E-value=0.035 Score=58.89 Aligned_cols=24 Identities=42% Similarity=0.477 Sum_probs=21.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.++++||+||+||||.+--||-.+
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 599999999999999998887543
No 133
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.24 E-value=0.073 Score=52.36 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=23.2
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.|..|+|+||.|+||||.+..||..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 35789999999999999999999876
No 134
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.19 E-value=0.045 Score=51.93 Aligned_cols=27 Identities=22% Similarity=0.269 Sum_probs=23.2
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..|..|+|+||.|+||||.+..||..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 346789999999999999999988765
No 135
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.14 E-value=0.073 Score=55.20 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=23.7
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..+..++|+|++||||||.+--||..+.
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999998874
No 136
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.12 E-value=0.019 Score=57.80 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=21.3
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
|.+++|||+||+||||.+--|+..+
T Consensus 60 ~G~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 60 GGFCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp SSEEEEEESHHHHHHHHTHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 4499999999999999998877654
No 137
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.05 E-value=0.047 Score=51.31 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=22.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+.|+|.||.|+||||.+..||..+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999999874
No 138
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.02 E-value=0.056 Score=56.84 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=24.4
Q ss_pred hhhHhHHH-hhhcCCCeEEEEEeeCCCChhhHHHHH
Q 013364 401 DILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKV 435 (444)
Q Consensus 401 d~l~~i~~-~~~~~~p~vI~fVGvNGVGKTTTlAKL 435 (444)
..|.+|.. ...+| .+++++|+||+||||.+.-+
T Consensus 26 ~~Ld~i~~G~i~~G--e~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 26 EGFDDISHGGLPIG--RSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTHHHHTTSSEETT--SEEEEEESTTSSHHHHHHHH
T ss_pred hhHHHhcCCCCCCC--eEEEEEcCCCCCHHHHHHHH
Confidence 34555544 33344 69999999999999999884
No 139
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.98 E-value=0.032 Score=57.05 Aligned_cols=27 Identities=41% Similarity=0.493 Sum_probs=23.1
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
...|.+|+|+|+.|+||||.+..|+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 346889999999999999998888754
No 140
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.95 E-value=0.08 Score=51.83 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.5
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
|..++|.|+.|+||||.+..+|..+.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998774
No 141
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.91 E-value=0.01 Score=63.33 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=21.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.++++||+||+||||.+.-|+-.+.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhhccC
Confidence 5899999999999999988876553
No 142
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.90 E-value=0.046 Score=56.28 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.0
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
+-...|++||+|||||||.|--|+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhC
Confidence 3446789999999999999988764
No 143
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.87 E-value=0.086 Score=51.79 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=23.5
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+..++|+||.|+||||.+-.||..+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999998875
No 144
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.77 E-value=0.074 Score=50.71 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEeeCCCChhhHHHHHHHHH
Q 013364 418 VVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 418 I~fVGvNGVGKTTTlAKLA~~l 439 (444)
++|.||.|+||||.+..+|..+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 8999999999999999999876
No 145
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.74 E-value=0.064 Score=57.35 Aligned_cols=28 Identities=32% Similarity=0.264 Sum_probs=24.9
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
..++++.|+.|+||||+++.|+..|...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999988754
No 146
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.72 E-value=0.1 Score=51.04 Aligned_cols=26 Identities=23% Similarity=0.149 Sum_probs=23.0
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
|.-|+|+||.|+||||.+-.||..+.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 57899999999999999999988653
No 147
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.67 E-value=0.025 Score=60.14 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999998887544
No 148
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.66 E-value=0.087 Score=54.54 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=24.9
Q ss_pred hcCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 411 EQRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 411 ~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..+++..|+|+||.|+||||.+-.||..+.
T Consensus 46 ~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 46 EAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 345567899999999999999999987653
No 149
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.57 E-value=0.01 Score=63.61 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.++++||+||+||||.+.-|+-.+
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 589999999999999998887654
No 150
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.56 E-value=0.011 Score=63.26 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.++++||+||+||||.+.-|+-.+
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 589999999999999998887554
No 151
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.48 E-value=0.023 Score=61.69 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=20.6
Q ss_pred hHhHHHhhhcCCCeEEEEEeeCCCChhhHH
Q 013364 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 403 l~~i~~~~~~~~p~vI~fVGvNGVGKTTTl 432 (444)
|++|.....+| .++++|||||+||||.+
T Consensus 34 L~~vsl~i~~G--e~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 34 LKNIDVEIPRG--KLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CCSEEEEEETT--SEEEEECSTTSSHHHHH
T ss_pred eeccEEEECCC--CEEEEECCCCCCHHHHh
Confidence 33343333444 69999999999999996
No 152
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.46 E-value=0.15 Score=52.87 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=23.2
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.|.-|+|+||.|+||||.+..||..+.
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356799999999999999999988763
No 153
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.44 E-value=0.064 Score=55.24 Aligned_cols=28 Identities=18% Similarity=0.244 Sum_probs=25.0
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
+..++|+|++|+||||.+..||..+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~ 157 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 6689999999999999999999988654
No 154
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.42 E-value=0.032 Score=59.15 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--|+-.+
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999998887543
No 155
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.31 E-value=0.11 Score=49.30 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
++..|+|||..||||||.+-.|..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999999987753
No 156
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.25 E-value=0.034 Score=59.90 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++||||+||||.+--|+-.+
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999998887543
No 157
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.20 E-value=0.08 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.5
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
...|+|+|++|+||||.+..||..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999999998864
No 158
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.17 E-value=0.097 Score=48.63 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=19.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.+++++|+||+||||.+..+...
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHhc
Confidence 58999999999999988766543
No 159
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.15 E-value=0.03 Score=60.36 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=20.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--||-.+
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 599999999999999998877543
No 160
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.10 E-value=0.078 Score=48.16 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.7
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.++..|+|||..||||||.+..|+.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc
Confidence 3467899999999999999998864
No 161
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.05 E-value=0.0095 Score=63.58 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=20.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.++++|||||+||||.+.-|+-.+
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 589999999999999987766543
No 162
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=91.92 E-value=0.13 Score=53.75 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.3
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.|.-|+|+||+|+||||.+-.||..+
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35669999999999999999888754
No 163
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.83 E-value=0.13 Score=49.33 Aligned_cols=29 Identities=24% Similarity=0.219 Sum_probs=25.2
Q ss_pred CCeEEEEEee-CCCChhhHHHHHHHHHHHh
Q 013364 414 KPYVVVFVGV-NGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 414 ~p~vI~fVGv-NGVGKTTTlAKLA~~l~~~ 442 (444)
.+++|+|+|+ .|+||||+.+-||..|-+.
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~ 110 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQA 110 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhC
Confidence 4689999987 5899999999999998753
No 164
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=91.80 E-value=0.16 Score=53.52 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=21.5
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
|.-|+|+||+|+||||.+-.||..+
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4459999999999999998888764
No 165
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=91.80 E-value=0.039 Score=51.89 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=22.3
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
|.-|+|+||.|+||||.+..||..+.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Confidence 45589999999999999999998653
No 166
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.79 E-value=0.073 Score=53.00 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=22.1
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+..|+|+|+.|+||||.+-.||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998866
No 167
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.75 E-value=0.17 Score=52.18 Aligned_cols=27 Identities=19% Similarity=0.119 Sum_probs=24.9
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
.++|.|+-|+||||++..++.+|....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 899999999999999999999998653
No 168
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.73 E-value=0.25 Score=55.02 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=23.3
Q ss_pred CC-eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KP-YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p-~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+| ..|+|+||+|||||+.+--||..+.
T Consensus 586 ~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 586 RPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45 4899999999999999988988774
No 169
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.70 E-value=0.36 Score=52.74 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=22.7
Q ss_pred CC-eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KP-YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p-~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+| ..++|+||+|||||+.+-.||..+
T Consensus 486 ~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 486 KPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 45 379999999999999999998876
No 170
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.64 E-value=0.045 Score=59.07 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=20.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++|+||+||||.+--|+-.+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 479999999999999998887543
No 171
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.63 E-value=0.15 Score=49.59 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=25.8
Q ss_pred CCCeEEEEEee-CCCChhhHHHHHHHHHHHh
Q 013364 413 RKPYVVVFVGV-NGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 413 ~~p~vI~fVGv-NGVGKTTTlAKLA~~l~~~ 442 (444)
..+.+|+|+|+ .||||||+.+-||..|.+.
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~ 132 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQS 132 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhC
Confidence 34689999998 5899999999999998753
No 172
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.63 E-value=0.17 Score=52.35 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=24.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.|.-|+|.||.|+|||+++..||..+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999998764
No 173
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.62 E-value=0.013 Score=62.65 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=20.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.++++||+||+||||.+.-|+..+
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 589999999999999998776544
No 174
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.61 E-value=0.16 Score=52.43 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=24.2
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.|.-|+|.||.|+|||+.+.-||..+.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 477899999999999999999998764
No 175
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.56 E-value=0.14 Score=51.69 Aligned_cols=27 Identities=19% Similarity=0.063 Sum_probs=24.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.++.++|++|+||||.+-.||..+...
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~ 88 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKM 88 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 699999999999999999999877654
No 176
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.52 E-value=0.1 Score=52.41 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=23.2
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+.++++|++|+||||++..|+..+..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~ 61 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYM 61 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999987754
No 177
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.41 E-value=0.16 Score=52.23 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=23.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.|..|+|+||.|+||||.+..||..+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999998865
No 178
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=91.38 E-value=0.16 Score=49.33 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=25.6
Q ss_pred CCCeEEEEEeeC-CCChhhHHHHHHHHHHHh
Q 013364 413 RKPYVVVFVGVN-GVGKSTNLAKVKLIILID 442 (444)
Q Consensus 413 ~~p~vI~fVGvN-GVGKTTTlAKLA~~l~~~ 442 (444)
.++++|+|+|+. ||||||+.+-||..|.+.
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~ 120 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQT 120 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhC
Confidence 356899999985 899999999999998754
No 179
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.07 E-value=0.096 Score=50.94 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.3
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+..|+|+|+.|+||||.+..||..+.
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 45789999999999999998887653
No 180
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.97 E-value=0.087 Score=50.71 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.2
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+..|+|+|+.|+||||.+..||..+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998765
No 181
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.97 E-value=0.31 Score=49.76 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=57.6
Q ss_pred chHHHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHc
Q 013364 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (444)
Q Consensus 315 ~~~~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL 394 (444)
|+-...+..|......|-+++. ...-++..--+++...-+.+|++.+.+.+. . .|.+. ..+.+. +..+.++-
T Consensus 90 gi~~~~~~~L~~ag~~tv~~~~--~~~~~~L~~~~gis~~~~~~i~~~a~~~~~-~---~~~ta-~~l~~~-~~~~~~i~ 161 (400)
T 3lda_A 90 GITMADVKKLRESGLHTAEAVA--YAPRKDLLEIKGISEAKADKLLNEAARLVP-M---GFVTA-ADFHMR-RSELICLT 161 (400)
T ss_dssp TCCHHHHHHHHHTTCCBHHHHH--HSCHHHHHTSTTCCHHHHHHHHHHHHHHSC-C---SCCCH-HHHHHH-HHTSCEEC
T ss_pred CCCHHHHHHHHHcCCCcHHHHH--hCCHHHHHHHhCCCHHHHHHHHHHHHHhcc-c---cCCCH-HHHHhh-hccCCccc
Confidence 3333455666555555555542 112222333469999999999998877542 2 23222 222211 11111111
Q ss_pred CCCCcchhhHhHH-HhhhcCCCeEEEEEeeCCCChhhHHHHHHHH
Q 013364 395 TPRRSIDILRDVH-AAKEQRKPYVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 395 ~p~~~~d~l~~i~-~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
+- +.-|..+. --...+ .++.|+|++|+||||.+--||..
T Consensus 162 TG---~~~LD~lLgGGI~~G--ei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 162 TG---SKNLDTLLGGGVETG--SITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp CS---CHHHHHHTTTSEETT--SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cC---ChhHHHHhcCCcCCC--cEEEEEcCCCCChHHHHHHHHHH
Confidence 11 22122221 011122 59999999999999999877743
No 182
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.96 E-value=0.11 Score=54.57 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.9
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+..++|+||.|+||||++-.||..+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998765
No 183
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.75 E-value=0.16 Score=56.60 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=23.8
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+..++|+|++||||||.+--||..+..
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3456899999999999999999988744
No 184
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=90.75 E-value=0.42 Score=47.74 Aligned_cols=31 Identities=32% Similarity=0.348 Sum_probs=26.5
Q ss_pred cCCCeEEEEEe-eCCCChhhHHHHHHHHHHHh
Q 013364 412 QRKPYVVVFVG-VNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 412 ~~~p~vI~fVG-vNGVGKTTTlAKLA~~l~~~ 442 (444)
.+++++|+|+| --||||||+.+-||..|.+.
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~ 171 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANM 171 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhC
Confidence 34678999996 78899999999999998764
No 185
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.68 E-value=0.21 Score=51.27 Aligned_cols=28 Identities=18% Similarity=0.142 Sum_probs=26.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
..+++||+.|+||||.+.-||.+..++|
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 6899999999999999999999998875
No 186
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.65 E-value=0.11 Score=59.15 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=19.6
Q ss_pred eEEEEEeeCCCChhhHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA 436 (444)
.+++++|+||+||||.+--|+
T Consensus 462 e~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999999887
No 187
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.60 E-value=0.15 Score=53.57 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=23.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+++++|+||+||||.+..||..+..
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 69999999999999999999987654
No 188
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.59 E-value=0.18 Score=50.50 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=23.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.++.++|++|+||||.+-.||..+..+
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~ 88 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAA 88 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 699999999999999999999877654
No 189
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.54 E-value=0.24 Score=51.30 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=24.2
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.|.-|+|.||.|+|||+++..||..+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 478999999999999999999998764
No 190
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=90.47 E-value=1.2 Score=38.44 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=63.1
Q ss_pred CcceEEEeecCcEEEEeecccCC--CCCCCcHHHHHHHhHhhcccC--CCceeeccCCCceeeEEEEecccceEEEEEec
Q 013364 1 MLEQLLIFTRGGLILWTCKELGN--ALKGSPIDTLIRSCLLEERSG--LASFNYDSAGAAYTLKWTFHNELGLVFVAVYQ 76 (444)
Q Consensus 1 MLD~f~IftkgGiVLWs~~~~~~--~~~~~pin~LI~~vllEeR~~--~~~~~~~~~~d~y~lkw~~~Ne~~LVFVvvYQ 76 (444)
||.++.|+++.|=++-++.+.+. ......+..+.+.++ .|.+ .+-+.+ +++++-|.-.++ |.||++=.
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~--~~~~~~~~~~~~----~~~~~vy~~~~~--Lyfv~~~~ 72 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVT--VRDAKHTNFVEF----RNFKIIYRRYAG--LYFCICVD 72 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHH--TCCTTSCSEEEE----TTEEEEEEEETT--EEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHh--cCCCCCCCEEEE----CCEEEEEEEECC--EEEEEEeC
Confidence 99999999999999988776521 112223445555544 4432 234677 899999998885 68888877
Q ss_pred cccchhhHHHHHHHHHHHHHHhcCC
Q 013364 77 RILHLLYVDDLLAMMKQSFSEIYDP 101 (444)
Q Consensus 77 ~iL~L~yvD~LL~~vk~~F~~~y~~ 101 (444)
.=-.-..+=++|..+...|.+.|++
T Consensus 73 ~~~N~l~~le~L~~~ve~l~~yf~~ 97 (142)
T 2vgl_S 73 VNDNNLAYLEAIHNFVEVLNEYFHN 97 (142)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 6666555666677777777777764
No 191
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.45 E-value=0.12 Score=51.43 Aligned_cols=26 Identities=23% Similarity=0.149 Sum_probs=22.7
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
|.-|+|+||.|+||||.+..||..+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Confidence 45799999999999999999998763
No 192
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.45 E-value=0.23 Score=49.72 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=22.3
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+..|+|+|+.|+||||.+-.||..+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh
Confidence 5789999999999999999888764
No 193
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.44 E-value=0.21 Score=54.73 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=23.7
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..+..++|+||.||||||.+--||..+.
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 3456789999999999999999998773
No 194
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=90.42 E-value=0.14 Score=52.56 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.2
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.+..|++||++||||||.+-.|+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g 202 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILN 202 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHhC
Confidence 467999999999999999988764
No 195
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=90.36 E-value=0.15 Score=54.79 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=23.3
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
+.++.||.|+||||||+-+.++|.++
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~ 232 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQ 232 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 67899999999999999999888764
No 196
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=90.34 E-value=0.097 Score=56.68 Aligned_cols=20 Identities=45% Similarity=0.599 Sum_probs=17.5
Q ss_pred eEEEEEeeCCCChhhHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKV 435 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKL 435 (444)
.+++++||||+||||.+--|
T Consensus 349 e~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTT
T ss_pred CEEEEEeeCCCCHHHHHHHH
Confidence 58999999999999998544
No 197
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.33 E-value=0.15 Score=54.87 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.8
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
++++.||.|+|||||++.++++|.+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~ 221 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLAR 221 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999998875
No 198
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=90.21 E-value=0.14 Score=57.07 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.2
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
..+++++||||+||||.+--||-.
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 368999999999999999988864
No 199
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=90.20 E-value=0.16 Score=54.53 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=23.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.++++.|+.|+||||+++.|...|.+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999988864
No 200
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=90.11 E-value=0.13 Score=56.97 Aligned_cols=24 Identities=42% Similarity=0.468 Sum_probs=21.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.+++++||||+||||.+--||-.+
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhhh
Confidence 589999999999999999988654
No 201
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.06 E-value=0.13 Score=54.91 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..++|+|++|+||||.+--||..+
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred CEEEEEeCCCCCHHHHHHHHhccC
Confidence 478999999999999998888765
No 202
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=90.03 E-value=0.17 Score=52.19 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=23.3
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
|.-|+|.||.|+||||.+..||..+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 46799999999999999999998774
No 203
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.97 E-value=0.14 Score=49.51 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=22.8
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.|.+++|.||.|+||||.+-.||..+
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 46788999999999999999998765
No 204
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=89.86 E-value=0.18 Score=48.26 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=23.3
Q ss_pred CeEEEEEe---eCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVG---VNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVG---vNGVGKTTTlAKLA~~l~~~ 442 (444)
+++|+|++ --||||||+.+-||++|.+.
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~ 64 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKL 64 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhC
Confidence 35777776 78999999999999998753
No 205
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.83 E-value=0.1 Score=52.26 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.3
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA 436 (444)
.+.+..|++||.+||||||.+-.|.
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~ 58 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLF 58 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHT
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHh
Confidence 4556789999999999999998764
No 206
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=89.75 E-value=0.15 Score=51.22 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.+|++||++||||||.+-.|+.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~ 201 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTG 201 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHC
Confidence 4799999999999999998874
No 207
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.65 E-value=0.29 Score=50.24 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=23.9
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.|.-|+|.||.|+|||+.+.-||..+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 467899999999999999999998764
No 208
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=89.62 E-value=0.17 Score=50.01 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=23.9
Q ss_pred CCeEEEE--EeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVF--VGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~f--VGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+..+++ +|+.|+||||.+..++..+..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 4667888 999999999999999887754
No 209
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.60 E-value=0.18 Score=46.41 Aligned_cols=23 Identities=43% Similarity=0.547 Sum_probs=19.8
Q ss_pred CCeEEEEEeeCCCChhhHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA 436 (444)
..+.|++||..||||||.+-.++
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999887765
No 210
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.56 E-value=0.6 Score=45.35 Aligned_cols=104 Identities=17% Similarity=0.138 Sum_probs=55.6
Q ss_pred HHHHccCCccCChhchHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCC
Q 013364 320 MFQSIAGKANLDKADLEPALKALKDRLM-TKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRR 398 (444)
Q Consensus 320 ~~~~l~g~k~l~~edl~~~l~~l~~~Li-~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~ 398 (444)
+...|.....-|-+++ +..-...|. ..++..+-+.++++.++..+.. . |.+. ..+.+.. ..+ ..++ .
T Consensus 15 ~~~kL~~~gi~t~~~~---~~~~~~~L~~~~gis~~~a~~~i~~a~~~~~~-~---~~~~-~~~~~~~-~~~-~~i~-T- 82 (322)
T 2i1q_A 15 TAEKLVEAGYIDFMKI---ATATVGELTDIEGISEKAAAKMIMGARDLCDL-G---FKSG-IDLLKQR-STV-WKLS-T- 82 (322)
T ss_dssp HHHHHHHHTCCSHHHH---HTCCHHHHHTSTTCCHHHHHHHHHHHHHHTTC-S---CCCT-HHHHHHH-TTC-CEEC-C-
T ss_pred HHHHHHHcCCCcHHHH---HhCCHHHHHHhhCcCHHHHHHHHHHHHHhhhh-c---CCcH-HHHHHHh-ccC-Ceec-C-
Confidence 4444443334444443 332233344 3689999999999988876532 2 3222 2222110 000 1111 1
Q ss_pred cchhhHhHHHhhhcC--CCeEEEEEeeCCCChhhHHHHHHHH
Q 013364 399 SIDILRDVHAAKEQR--KPYVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 399 ~~d~l~~i~~~~~~~--~p~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.+.-|..+ ...| +-.++.++|++|+||||.+-.||..
T Consensus 83 G~~~LD~~---l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 83 SSSELDSV---LGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SCHHHHHH---TTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CChhHHHh---cCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 12222222 1111 2379999999999999999999875
No 211
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=89.49 E-value=1.8 Score=38.20 Aligned_cols=93 Identities=13% Similarity=0.205 Sum_probs=59.8
Q ss_pred CcceEEEeecCcEEEEeecccCCCCCCCcHHHHHHHhH--hhcccC--CCceeeccCCCceeeEEEEecccceEEEEEec
Q 013364 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCL--LEERSG--LASFNYDSAGAAYTLKWTFHNELGLVFVAVYQ 76 (444)
Q Consensus 1 MLD~f~IftkgGiVLWs~~~~~~~~~~~pin~LI~~vl--lEeR~~--~~~~~~~~~~d~y~lkw~~~Ne~~LVFVvvYQ 76 (444)
||.++-|+++.|=++-++.+.+. ...--..+++.++ +..|.+ .+-+.+ +++++-|.-.++ |.||++=.
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~i~~----~~~~~vy~~~~~--Lyfv~~~~ 72 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLAT--SDKERKKMVRELMQVVLARKPKMCSFLEW----RDLKVVYKRYAS--LYFCCAIE 72 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCC--CHHHHHHHHHHHHHHHHTSCSSSCSEEEE----TTEEEEEEEETT--EEEEEEEC
T ss_pred CeEEEEEECCCCCEEEEEeCCCC--CHHHHHHHHHHHHHHHhccCCCCCCeEEE----CCEEEEEEEECC--EEEEEEec
Confidence 99999999999999988776531 1110113333332 233433 334677 899999998885 68888877
Q ss_pred cccchhhHHHHHHHHHHHHHHhcCC
Q 013364 77 RILHLLYVDDLLAMMKQSFSEIYDP 101 (444)
Q Consensus 77 ~iL~L~yvD~LL~~vk~~F~~~y~~ 101 (444)
.=-.-..+=++|..+...|.+.|++
T Consensus 73 ~~~Nel~~le~L~~~vevl~~yf~~ 97 (158)
T 1w63_Q 73 GQDNELITLELIHRYVELLDKYFGS 97 (158)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 6555555556666666666666664
No 212
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.46 E-value=0.28 Score=53.51 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=24.1
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..+..++|+|+.||||||.+-.||..+.
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999998774
No 213
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=89.45 E-value=0.19 Score=55.86 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=23.1
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
++++.||.|+|||||++.++++|.+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 7789999999999999999998875
No 214
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.37 E-value=0.42 Score=49.46 Aligned_cols=54 Identities=19% Similarity=0.171 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHcCCCCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 380 SIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 380 ~~v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+.+++.|++.+.--|.. .++.. ...-..|.-|+|.||.|+|||+.+.-||..+.
T Consensus 188 d~~k~~L~e~v~~Pl~~---pe~f~----~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 188 ESQIQEIKESVELPLTH---PELYE----EMGIKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp HHHHHHHHHHHHHHHHC---CHHHH----HHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhC---HHHHH----hCCCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 44556666655543431 12221 11233478899999999999999999998654
No 215
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.36 E-value=0.31 Score=50.91 Aligned_cols=28 Identities=21% Similarity=0.199 Sum_probs=24.4
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
..|.-|+|.||.|+|||+.+..||..+.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 3578999999999999999999998664
No 216
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=89.32 E-value=0.11 Score=55.79 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEEeeCCCChhhHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.|++||+||+||||.+--|+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 4999999999999999888754
No 217
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=89.27 E-value=0.11 Score=53.51 Aligned_cols=22 Identities=36% Similarity=0.327 Sum_probs=19.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
..|++||+|||||||.|..|+.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg 179 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTR 179 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCS
T ss_pred CEEEEECCCCCcHHHHHHHHHc
Confidence 5799999999999999998864
No 218
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=89.12 E-value=0.28 Score=48.36 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=26.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
..+||++.|==|||||||.+=||+.|-+.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~ 75 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSIL 75 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHC
Confidence 46899999999999999999999998764
No 219
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.06 E-value=0.2 Score=42.99 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=19.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.-|+|.|++|+|||+.+.-|+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999998877776643
No 220
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=88.83 E-value=0.24 Score=53.57 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=25.1
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
+|.+|+|+|+.|+||||....||.+|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999884
No 221
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=88.57 E-value=0.21 Score=56.53 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.1
Q ss_pred CeEEEEEeeCCCChhhHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
..+++++||||+||||.+--||-
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999988753
No 222
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.52 E-value=0.31 Score=48.30 Aligned_cols=81 Identities=12% Similarity=0.054 Sum_probs=28.9
Q ss_pred HhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCCcchhhHhHHHhhhcC--CCeEEEEEeeC
Q 013364 347 MTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR--KPYVVVFVGVN 424 (444)
Q Consensus 347 i~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~--~p~vI~fVGvN 424 (444)
-.+++....+.++++.+...+.. .|.+. ..+. +....+-.-...+.-|..+ ...| +-.++.++|++
T Consensus 64 ~~~~is~~~~~~~~~~a~~~~~~----~~~~~-~~~~----~~~~~~~~i~TG~~~LD~~---LgGGl~~G~i~~I~G~~ 131 (343)
T 1v5w_A 64 NVKGLSEAKVDKIKEAANKLIEP----GFLTA-FEYS----EKRKMVFHITTGSQEFDKL---LGGGIESMAITEAFGEF 131 (343)
T ss_dssp ----------------------C----CSEEH-HHHH----HHGGGCCCBCCSCHHHHHH---TTSSBCSSEEEEEECCT
T ss_pred HhhCCCHHHHHHHHHHHHhhccc----CCCcH-HHHH----hhhcccceeecCChhHHHH---hcCCCCCCeEEEEECCC
Confidence 34678888888888887765431 23221 2222 1111111111112212222 1111 23699999999
Q ss_pred CCChhhHHHHHHHHH
Q 013364 425 GVGKSTNLAKVKLII 439 (444)
Q Consensus 425 GVGKTTTlAKLA~~l 439 (444)
|+||||.+-.||...
T Consensus 132 GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 132 RTGKTQLSHTLCVTA 146 (343)
T ss_dssp TCTHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998753
No 223
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.46 E-value=3.5 Score=39.77 Aligned_cols=110 Identities=10% Similarity=0.068 Sum_probs=58.1
Q ss_pred HHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhc----------ccccccccchhHHHHHHHHHH
Q 013364 320 MFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLE----------GKKLASFTRISSIVQAAMEEA 389 (444)
Q Consensus 320 ~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~----------g~k~~~~~~~~~~v~~~l~~~ 389 (444)
|++-+.-....+++++.-.-.+-...++..+-....++..+.-++..+. .. ....... ...
T Consensus 4 mVqw~~d~~i~~e~~~~~~~~d~~~a~l~~~~~~~~vk~~~~m~r~~~~~~~s~~~~i~~~--~~~~~~~-------~n~ 74 (267)
T 1u0j_A 4 LVGWLVDKGITSEKQWIQEDQASYISFNAASNSRSQIKAALDNAGKIMSLTKTAPDYLVGQ--QPVEDIS-------SNR 74 (267)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHCCHHHHHSCS--SCCSCGG-------GCH
T ss_pred HHHHHHHcCCCCHHHHHhcCHHHHHHHhhcccchhHHHHHHHHHHHHHHccCCHHHHhccc--CCCCCCc-------hHH
Confidence 3444444455666666533344455677888888877777776665542 11 0011100 012
Q ss_pred HHHHcCC--CCcchhhHhHHHhhhcCC---CeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 390 LVRILTP--RRSIDILRDVHAAKEQRK---PYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 390 L~~iL~p--~~~~d~l~~i~~~~~~~~---p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+.++|.- -..+.++.-+ .....++ ..-|+|.||.|+|||+.+.-||..+
T Consensus 75 i~~~l~~qg~~~~~~~~~l-~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 75 IYKILELNGYDPQYAASVF-LGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCCHHHHHHHH-HHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHH-HHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 2333321 1111111111 1111222 4579999999999999999999854
No 224
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=88.42 E-value=0.14 Score=57.68 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.9
Q ss_pred eEEEEEeeCCCChhhHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.+++++||||+||||.+--||-
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHH
Confidence 6899999999999999988774
No 225
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.34 E-value=0.11 Score=58.92 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.+++++|+||+||||.+--|+-.
T Consensus 700 eivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 700 SRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp CEEEECSCCCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999888743
No 226
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=88.26 E-value=0.17 Score=49.13 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEEEeeCCCChhhHHHHHHHHHH
Q 013364 418 VVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 418 I~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
|+|+|+.|+||||.+-.||..+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 99999999999999998887653
No 227
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.22 E-value=2.7 Score=42.87 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=24.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.+++++|++|+||||.+..+|.....+
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~ 227 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALK 227 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 599999999999999999999877654
No 228
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=88.08 E-value=0.39 Score=48.24 Aligned_cols=30 Identities=17% Similarity=0.239 Sum_probs=25.0
Q ss_pred cCCCeEEEEE-eeCCCChhhHHHHHHHHHHH
Q 013364 412 QRKPYVVVFV-GVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 412 ~~~p~vI~fV-GvNGVGKTTTlAKLA~~l~~ 441 (444)
..++++|+|+ |--||||||+.+-||+.|-.
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~~La~ 135 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAHAMRA 135 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 3457899998 55679999999999999874
No 229
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=88.06 E-value=0.31 Score=49.44 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=24.0
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
..-++++|++|+||||++..|...+...
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~ 80 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLR 80 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4689999999999999998888777653
No 230
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=87.93 E-value=0.16 Score=49.38 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=20.4
Q ss_pred EEEEEeeCCCChhhHHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
-|+|+|+.|+||||.+--||..+
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 58999999999999998888754
No 231
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=87.75 E-value=0.27 Score=47.07 Aligned_cols=21 Identities=48% Similarity=0.593 Sum_probs=19.1
Q ss_pred eEEEEEeeCCCChhhHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA 436 (444)
..|+|||.+||||||.+-.|+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~ 120 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLK 120 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred hheEEeCCCCCCHHHHHHHHh
Confidence 579999999999999998876
No 232
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=87.26 E-value=0.37 Score=46.62 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=21.0
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA 436 (444)
.++..|+|||..||||||.+-.|.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~ 141 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLA 141 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCceEEEEecCCCchHHHHHHHh
Confidence 357789999999999999998775
No 233
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.22 E-value=0.22 Score=55.29 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.1
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.|..|+|+|++|+||||.+-.||..+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 46789999999999999888887653
No 234
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=86.83 E-value=0.45 Score=45.61 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=20.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.+++++|+-|+||||.+..++..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 48999999999999999988754
No 235
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=86.79 E-value=0.37 Score=53.54 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=22.7
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
++++.||.|+|||||++.++++|.+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~ 401 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSK 401 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999988865
No 236
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=86.75 E-value=0.35 Score=50.69 Aligned_cols=27 Identities=30% Similarity=0.245 Sum_probs=23.0
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+.+.+|+++|+-|+||||.+..+++..
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 171 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVRDH 171 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHCCH
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHhch
Confidence 457899999999999999998887543
No 237
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=86.70 E-value=0.15 Score=53.49 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=22.3
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.|.+.+|+|+||+||||.+--|++.+
T Consensus 59 ~~g~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 59 GGGFCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp CCSEEEEEESHHHHHHHHTHHHHHHT
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 35699999999999999998887653
No 238
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=86.46 E-value=0.19 Score=44.75 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=19.9
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA 436 (444)
..+..|+|||..||||||.+-.|+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSB
T ss_pred CcceEEEEECCCCCCHHHHHHHHh
Confidence 346789999999999999886553
No 239
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=86.41 E-value=0.47 Score=47.58 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=24.5
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
..+|++.|++|+||||.+.-||..+.++
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~ 90 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE 90 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3699999999999999999999877654
No 240
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=86.23 E-value=0.56 Score=49.29 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.4
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.+.+|+++|+-||||||.+..+++
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999997766664
No 241
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=86.23 E-value=0.36 Score=47.43 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=19.5
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||+|+ |||||..-|+..|...
T Consensus 110 ~IaVTGTnGKTTTt~ll~~iL~~~ 133 (326)
T 3eag_A 110 VLGVAGTHGKTTTASMLAWVLEYA 133 (326)
T ss_dssp EEEEESSSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHHHHc
Confidence 5778887 9999999999988764
No 242
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=86.15 E-value=0.063 Score=62.65 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=20.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.++++||+||+||||.+.-|+.++
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999998776544
No 243
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=86.06 E-value=0.46 Score=50.73 Aligned_cols=28 Identities=11% Similarity=0.254 Sum_probs=25.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
+|.+|+|+|+-|+||||....|+..|..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 5789999999999999999999988764
No 244
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=86.03 E-value=0.19 Score=43.01 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=16.2
Q ss_pred EEEEEeeCCCChhhHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA 436 (444)
-|+|.|+.|+|||+.+.-|+
T Consensus 29 ~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGC
T ss_pred cEEEECCCCccHHHHHHHHH
Confidence 48899999999998765544
No 245
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=85.93 E-value=0.46 Score=50.44 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.8
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+.+|+|+|+.|+||||....|+..|..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 4789999999999999999999987754
No 246
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=85.85 E-value=0.36 Score=55.08 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=19.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.+++++||||+||||.+--|+.
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6999999999999999988743
No 247
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.82 E-value=0.098 Score=61.24 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=20.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..|.+||++|+||||.+.-|..+|
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCc
Confidence 479999999999999998877654
No 248
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=85.78 E-value=0.2 Score=55.60 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=23.2
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+..++|+||+|+||||.+-.||..+.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 356799999999999999988888763
No 249
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=85.75 E-value=0.55 Score=49.13 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=24.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
..++|+|+.||||||.+.-|+.....++
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~ 179 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH 179 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc
Confidence 5799999999999999999998877654
No 250
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=85.41 E-value=0.4 Score=48.31 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=17.7
Q ss_pred cCCCeEEEEE-eeCCCChhhHHHHHHHHHH
Q 013364 412 QRKPYVVVFV-GVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 412 ~~~p~vI~fV-GvNGVGKTTTlAKLA~~l~ 440 (444)
..++++|+|+ |--||||||+.+-||+.|-
T Consensus 108 ~~~~~vIav~s~KGGvGKTT~a~nLA~~LA 137 (403)
T 3ez9_A 108 HKSPYVIFVVNLKGGVSKTVSTVTLAHALR 137 (403)
T ss_dssp SCSCEEEEECCC--------CHHHHHHHHH
T ss_pred CCCceEEEEEcCCCCchHHHHHHHHHHHHH
Confidence 4567899998 6678999999999999986
No 251
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=85.24 E-value=0.25 Score=50.25 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=21.9
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
+...|+|=|+=|+||||.+..|+.+|..
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~~ 75 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALGSR 75 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC----
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3467999999999999999999999864
No 252
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=85.20 E-value=6.9 Score=39.83 Aligned_cols=113 Identities=16% Similarity=0.190 Sum_probs=71.5
Q ss_pred CcceEEEeecCcEEEEeecccCCCCCCCcHHHHHHHhHhhc--ccCCCceeeccCCCceeeEEEEecccceEEEEEeccc
Q 013364 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEE--RSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRI 78 (444)
Q Consensus 1 MLD~f~IftkgGiVLWs~~~~~~~~~~~pin~LI~~vllEe--R~~~~~~~~~~~~d~y~lkw~~~Ne~~LVFVvvYQ~i 78 (444)
||.++.|+++.|=+|-++.|.+ ....+.+.++.+.++--. ....+-+.+ +++++-|...++ |.||++=..=
T Consensus 2 MI~~i~I~~~~Gk~~l~k~y~~-~~~~~~~~~f~~~v~~~~~~~~~~~~i~~----~~~~~vy~~~~~--Lyfv~~~~~~ 74 (423)
T 1w63_M 2 SASAVYVLDLKGKVLICRNYRG-DVDMSEVEHFMPILMEKEEEGMLSPILAH----GGVRFMWIKHNN--LYLVATSKKN 74 (423)
T ss_dssp CCCEEEEEETTTEECSCBCCSC-SCTTTTHHHHHHHHHHHHHTSCCCSEEEE----TTEEEEEEEETT--EEEEEEESSC
T ss_pred ceEEEEEECCCCCEEEEEecCC-CCChHHHHHHHHHHhhccccCCCCCEEEE----CCEEEEEEEECC--EEEEEEecCC
Confidence 9999999999999998876663 233455666666655321 223345678 899999988875 6777776654
Q ss_pred cchhhHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHH
Q 013364 79 LHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKEAEA 122 (444)
Q Consensus 79 L~L~yvD~LL~~vk~~F~~~y~~~~~~~~~Fd~~F~~~l~~~e~ 122 (444)
-.-..+=++|..+...+.++|++... .+--+.|..+..-+++
T Consensus 75 ~n~l~~le~L~~~v~~l~~yf~~v~E--~~I~~Nf~~vy~lLDE 116 (423)
T 1w63_M 75 ACVSLVFSFLYKVVQVFSEYFKELEE--ESIRDNFVIIYELLDE 116 (423)
T ss_dssp CCTHHHHHHHHHHHHHHHHHSSCCSH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCH--HHHHHhHHHHHHHHHH
Confidence 45445555666666667777753221 1233345555545544
No 253
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=85.07 E-value=0.57 Score=44.79 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=20.6
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.+..|+|||..||||||.+..++.
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~ 177 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTT 177 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCChHHHHHHHHh
Confidence 357899999999999999987763
No 254
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=85.06 E-value=0.094 Score=61.20 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.++.+||+||+||||.+.-|+..+
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 589999999999999998877544
No 255
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=85.04 E-value=0.43 Score=46.93 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=20.2
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA 436 (444)
.+++.|+|||..||||||.+-.|.
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~ 186 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLK 186 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTC
T ss_pred cCcceEEEECCCCccHHHHHHHHh
Confidence 356789999999999999987653
No 256
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=84.09 E-value=0.47 Score=47.01 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=19.3
Q ss_pred EEEEEeeCCCChhhHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.|++||.+||||||.|-.|+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 899999999999999988864
No 257
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=83.94 E-value=0.26 Score=55.09 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=19.2
Q ss_pred eEEEEEeeCCCChhhHHHH-HHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAK-VKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAK-LA~~l 439 (444)
.+++++||||+||||.+-- |+-.+
T Consensus 524 eiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 524 VMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp SEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred CEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 5999999999999998764 54333
No 258
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=83.69 E-value=0.66 Score=45.31 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=23.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.++++.|+.|+||||.+.-+|.....
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 69999999999999999999977654
No 259
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=83.45 E-value=0.88 Score=47.21 Aligned_cols=24 Identities=33% Similarity=0.279 Sum_probs=21.0
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
+..|++||..||||||.+-.|+..
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 467999999999999999988763
No 260
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=83.30 E-value=0.56 Score=48.18 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=18.8
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||+|+ |||||..-|++.|...
T Consensus 114 ~IaVTGTnGKTTTt~ml~~iL~~~ 137 (451)
T 3lk7_A 114 LIGITGSNGKTTTTTMIAEVLNAG 137 (451)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHHHhc
Confidence 5667776 7999999999988764
No 261
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=83.27 E-value=6.4 Score=40.25 Aligned_cols=93 Identities=15% Similarity=0.193 Sum_probs=60.4
Q ss_pred CcceEEEeecCcEEEEeecccCCCCCCCcHHHHHHHhHhhccc--CCCceeeccCCCceeeEEEEecccceEEEEEeccc
Q 013364 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERS--GLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRI 78 (444)
Q Consensus 1 MLD~f~IftkgGiVLWs~~~~~~~~~~~pin~LI~~vllEeR~--~~~~~~~~~~~d~y~lkw~~~Ne~~LVFVvvYQ~i 78 (444)
||.++.|+++.|=+|-++.|.+ .+..+.+..+.+.++ ..|. ..+-+.+ +++++-|.-.++ |.||++-..=
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~-~~~~~~~~~f~~~v~-~~~~~~~~~ii~~----~~~~~vy~~~~~--Lyfv~~~~~~ 72 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRD-DIGRNAVDAFRVNVI-HARQQVRSPVTNI----ARTSFFHVKRSN--IWLAAVTKQN 72 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSS-SCCHHHHHHHHHHTT-TCSSCCCCSEEEE----TTEEEEEEEETT--EEEEEEESSC
T ss_pred CeEEEEEECCCCCEEEEEecCC-CCChhHHHHHHHHHh-ccccCCCCCEEEE----CCEEEEEEEECC--EEEEEEecCC
Confidence 9999999999999998877653 122233444444333 3232 2344678 899999988885 6888887654
Q ss_pred cchhhHHHHHHHHHHHHHHhcCC
Q 013364 79 LHLLYVDDLLAMMKQSFSEIYDP 101 (444)
Q Consensus 79 L~L~yvD~LL~~vk~~F~~~y~~ 101 (444)
-.-..+=+||..+...|.++|+.
T Consensus 73 ~n~l~~le~L~~~v~vl~~yf~~ 95 (435)
T 2vgl_M 73 VNAAMVFEFLYKMCDVMAAYFGK 95 (435)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhc
Confidence 45444555555566666666663
No 262
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=83.15 E-value=0.63 Score=45.54 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.++.++|++|+||||.+-.||....
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHh
Confidence 6999999999999999999998653
No 263
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=83.14 E-value=15 Score=31.79 Aligned_cols=68 Identities=9% Similarity=0.019 Sum_probs=44.0
Q ss_pred CceeeccCCCceeeEEEEecccceEEEEEeccccchhhHHHHHHHHHHHHHHhcCCC-CC---C---CcchHHHHHHHHH
Q 013364 46 ASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPK-RT---D---YSDFDEMFRQLRK 118 (444)
Q Consensus 46 ~~~~~~~~~d~y~lkw~~~Ne~~LVFVvvYQ~iL~L~yvD~LL~~vk~~F~~~y~~~-~~---~---~~~Fd~~F~~~l~ 118 (444)
.++++ +.|..++... +=||+||++=-+-..--=.=.||+.|+.+|...|+.. .. . -..| ..|+..|+
T Consensus 61 ~sv~~----~~y~fH~~~~-~~gl~~l~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~~~~f-~~l~~~i~ 134 (144)
T 3bw6_A 61 QSIEE----GNYIGHVYAR-SEGICGVLITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKM-KQLDTYIS 134 (144)
T ss_dssp EEEEE----TTEEEEEEEC-TTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCGGGCC-THHHHHHH
T ss_pred EEEEe----CCEEEEEEEe-cCCEEEEEEECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccCCcch-HHHHHHHH
Confidence 46888 9999998832 3478888875544444444456778889999999754 21 1 2256 55665554
Q ss_pred H
Q 013364 119 E 119 (444)
Q Consensus 119 ~ 119 (444)
.
T Consensus 135 k 135 (144)
T 3bw6_A 135 K 135 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 264
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=83.02 E-value=0.75 Score=48.07 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=22.9
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..|.-|+|.|+.|+|||+.+-.||..+
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 346789999999999999988888754
No 265
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=82.67 E-value=1.1 Score=47.21 Aligned_cols=28 Identities=11% Similarity=0.062 Sum_probs=25.1
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+.+|.|+|+-|+||||....||..|..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999998864
No 266
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=82.56 E-value=0.63 Score=47.22 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=19.5
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||+|+ |||||.+-|+.-|...
T Consensus 51 vI~VTGTnGKtTT~~~l~~iL~~~ 74 (422)
T 1w78_A 51 VFTVAGTNGKGTTCRTLESILMAA 74 (422)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHHT
T ss_pred EEEEeCCcChHHHHHHHHHHHHHC
Confidence 6777777 8999999999998764
No 267
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=82.42 E-value=0.64 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=19.8
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||+|+ |||||.+-|+..|...
T Consensus 120 vI~VTGTnGKTTTt~ml~~iL~~~ 143 (475)
T 1p3d_A 120 GIAVAGTHGKTTTTAMISMIYTQA 143 (475)
T ss_dssp EEEEESSSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHHHhC
Confidence 6788887 9999999999998764
No 268
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=82.41 E-value=0.14 Score=60.00 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=20.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..+++||++|+||||.+.-|..+|
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cEEEEEecCCCcHHHHHHHhcccc
Confidence 589999999999999998776554
No 269
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=82.30 E-value=0.96 Score=45.53 Aligned_cols=28 Identities=14% Similarity=0.026 Sum_probs=24.1
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
..+|.+.|+.|+||||.+.-||+.+.++
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~ 101 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA 101 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC
Confidence 3689999999999999999999877543
No 270
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=82.20 E-value=0.69 Score=46.18 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.+++|.|+.|+||||.+.-+|+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 57899999999999999988874
No 271
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=82.09 E-value=0.67 Score=48.26 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=19.8
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||+|+ |||||.+-|+..|...
T Consensus 110 vI~VTGTnGKTTT~~ml~~iL~~~ 133 (498)
T 1e8c_A 110 LVGVTGTNGKTTTTQLLAQWSQLL 133 (498)
T ss_dssp EEEEESSSCHHHHHHHHHHHHHHT
T ss_pred EEEEeCCcChHHHHHHHHHHHHhC
Confidence 6778887 9999999999998764
No 272
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=81.97 E-value=0.63 Score=52.53 Aligned_cols=27 Identities=30% Similarity=0.256 Sum_probs=23.4
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
+.+.+|+++|+-||||||.+..+++..
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~~ 171 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRDH 171 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCCH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcCh
Confidence 457899999999999999988887754
No 273
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=81.93 E-value=1.2 Score=45.28 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.+..|+|||..||||||.+-.|..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~ 197 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLG 197 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhC
Confidence 468999999999999999988763
No 274
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=81.88 E-value=0.51 Score=53.57 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.6
Q ss_pred eEEEEEeeCCCChhhHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA 436 (444)
.+++++||||+||||.+--|.
T Consensus 669 eivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 669 VLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SEEEEECSTTSSHHHHHTTTH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 589999999999999987754
No 275
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=81.85 E-value=5 Score=41.19 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=24.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.+|++.|..|+||||.+.-+|.....+
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~ 224 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDN 224 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHc
Confidence 699999999999999999999877654
No 276
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=81.83 E-value=0.7 Score=47.05 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=19.2
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||+|+ |||||.+-|+.-|...
T Consensus 41 vI~VtGTnGKtTT~~~l~~iL~~~ 64 (428)
T 1jbw_A 41 YIHVTGTNGKGSAANAIAHVLEAS 64 (428)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCChHHHHHHHHHHHHHC
Confidence 5677776 8999999999998764
No 277
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=81.82 E-value=0.58 Score=48.07 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=19.7
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||+|+ |||||..-|+..|...
T Consensus 102 vI~VTGTnGKTTT~~~l~~iL~~~ 125 (452)
T 1gg4_A 102 VVALTGSSGKTSVKEMTAAILSQC 125 (452)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTT
T ss_pred EEEEeCCCCcHHHHHHHHHHHHhc
Confidence 6788887 9999999999988654
No 278
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=81.74 E-value=0.52 Score=53.16 Aligned_cols=17 Identities=41% Similarity=0.614 Sum_probs=16.0
Q ss_pred eEEEEEeeCCCChhhHH
Q 013364 416 YVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTl 432 (444)
.+++++||||+||||.+
T Consensus 611 eiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 611 VFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEEccCCCChhhhH
Confidence 58999999999999997
No 279
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=81.57 E-value=0.72 Score=47.93 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=19.7
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||+|+ |||||.+-|+..|...
T Consensus 121 vI~VTGTnGKTTTt~ml~~iL~~~ 144 (491)
T 2f00_A 121 GIAIAGTHGKTTTTAMVSSIYAEA 144 (491)
T ss_dssp EEEEESSSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHHHhC
Confidence 6778887 9999999999998764
No 280
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=81.56 E-value=0.73 Score=47.13 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=19.2
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||+|+ |||||.+-|+..|...
T Consensus 106 vI~VTGTnGKTTT~~ml~~iL~~~ 129 (439)
T 2x5o_A 106 IVAITGSNGKSTVTTLVGEMAKAA 129 (439)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHHHhc
Confidence 5677777 8999999999998764
No 281
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=81.38 E-value=1.5 Score=46.50 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=25.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
...++++.|..||||||+.+-||..|.+.
T Consensus 326 ~~~~~~~~~~~g~Gktt~a~~lA~~l~~~ 354 (589)
T 1ihu_A 326 EHGLIMLMGKGGVGKTTMAAAIAVRLADM 354 (589)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEecCCCCChhhHHHHHHHHHHHC
Confidence 34678889999999999999999998764
No 282
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=81.24 E-value=0.74 Score=48.41 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=19.5
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||||+ |||||..-|+..|...
T Consensus 124 vIaVTGTnGKTTTt~li~~iL~~~ 147 (524)
T 3hn7_A 124 VIAVAGTHGKTTTTTMLAWILHYA 147 (524)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHHHHc
Confidence 5777887 9999999999988764
No 283
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=81.08 E-value=0.76 Score=47.89 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=19.8
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||+|+ |||||.+-|+..|...
T Consensus 124 ~IaVTGTnGKTTTt~ml~~iL~~~ 147 (494)
T 4hv4_A 124 GIAVAGTHGKTTTTAMLSSIYAEA 147 (494)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHT
T ss_pred EEEEecCCChHHHHHHHHHHHHhc
Confidence 4888887 9999999999988764
No 284
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=80.91 E-value=0.6 Score=47.91 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=19.6
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||+|+ |||||..-|+..|...
T Consensus 102 vI~VTGTnGKTTT~~~l~~iL~~~ 125 (454)
T 2am1_A 102 VFAVTGSNGKTTTKDMLAHLLSTR 125 (454)
T ss_dssp EEEEECCCSSSCHHHHHHHHHTTT
T ss_pred EEEEeCCCCcHHHHHHHHHHHHhc
Confidence 6788887 9999999999988654
No 285
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=80.89 E-value=0.77 Score=48.33 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.9
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||+|+ |||||..-|+..|...
T Consensus 148 vI~VTGTnGKTTT~~ml~~iL~~~ 171 (535)
T 2wtz_A 148 VIGITGTSGKTTTTYLVEAGLRAA 171 (535)
T ss_dssp EEEEESSSCHHHHHHHHHHHHHHT
T ss_pred EEEeeCCCChHHHHHHHHHHHHHC
Confidence 6788887 9999999999998764
No 286
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=80.38 E-value=0.89 Score=48.19 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=19.9
Q ss_pred CCeEEEEEeeCCCChhhHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA 436 (444)
.+..|+|||..||||||.|-.|.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Ll 86 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLL 86 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 35689999999999999988765
No 287
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=80.19 E-value=0.84 Score=46.83 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=19.5
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||+|+ |||||.+-|+..|...
T Consensus 54 vI~VTGTnGKtTT~~~l~~iL~~~ 77 (442)
T 1o5z_A 54 TIHIGGTNGKGSVANMVSNILVSQ 77 (442)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHH
T ss_pred EEEEECCcCHHHHHHHHHHHHHHC
Confidence 6777777 9999999999998764
No 288
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=80.12 E-value=14 Score=32.40 Aligned_cols=93 Identities=13% Similarity=0.100 Sum_probs=56.6
Q ss_pred CcceEEEeecCcEEEEeecccCCCCCCCcHHHHHHHhHh-hcccCCCceeeccCCCceeeEEEEecccceEEEEEecccc
Q 013364 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLL-EERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRIL 79 (444)
Q Consensus 1 MLD~f~IftkgGiVLWs~~~~~~~~~~~pin~LI~~vll-EeR~~~~~~~~~~~~d~y~lkw~~~Ne~~LVFVvvYQ~iL 79 (444)
||-++.|+.+-|=++-++.+.+.-.....-.+++++++- -.|...+.+.+ +++++-|+-.++ |.||++=..=-
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~~~i~~~----~~~~~vy~~~~~--Lyfv~~~~~~e 85 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALL----EGLTVVYKSSID--LYFYVIGSSYE 85 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCCCCEEEE----TTEEEEEEECSS--CEEEEEEETTS
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCCEEEE----CCEEEEEEEECC--EEEEEEEcCCC
Confidence 888999999999888766665200011113444444332 13544456788 999999999885 66776665544
Q ss_pred chhhHHHHHHHHHHHHHHhc
Q 013364 80 HLLYVDDLLAMMKQSFSEIY 99 (444)
Q Consensus 80 ~L~yvD~LL~~vk~~F~~~y 99 (444)
.-.-+=++|..+...|.+.|
T Consensus 86 Nel~ile~L~~~ve~l~~yf 105 (153)
T 3tjz_C 86 NELMLMTVLNCLFDSLSQML 105 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHh
Confidence 44444455555555555555
No 289
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=80.05 E-value=0.85 Score=47.17 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=19.4
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||+|+ |||||.+-|+..|...
T Consensus 116 vI~VTGTnGKTTTt~ml~~iL~~~ 139 (469)
T 1j6u_A 116 EFAVTGTDGKTTTTAMVAHVLKHL 139 (469)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHHHHc
Confidence 5777777 8999999999998764
No 290
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=80.00 E-value=0.5 Score=53.48 Aligned_cols=21 Identities=43% Similarity=0.537 Sum_probs=18.6
Q ss_pred eEEEEEeeCCCChhhHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA 436 (444)
.+++++||||+||||.+--|+
T Consensus 651 eiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 651 TFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SEEECCBCTTSSHHHHHTTTH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 589999999999999987754
No 291
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=79.74 E-value=0.96 Score=49.95 Aligned_cols=22 Identities=41% Similarity=0.744 Sum_probs=18.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.+++++|+||+||||.+.-++.
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999997766643
No 292
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=79.23 E-value=0.63 Score=48.91 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.-|+|+||.|+|||+.+--||..+
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred CeeEeecCchHHHHHHHHHHHHHH
Confidence 368999999999999888887644
No 293
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=79.12 E-value=1.6 Score=45.69 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=20.8
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
....|+|||..||||||.+..|..
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~ 63 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIG 63 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 347899999999999999988863
No 294
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=78.41 E-value=0.78 Score=40.77 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=20.3
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.+++++|+|.|||+....++..+.
T Consensus 50 ~~li~~~tGsGKT~~~~~~~~~~~ 73 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVYIAKDHL 73 (216)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578899999999999888877654
No 295
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=77.51 E-value=1.7 Score=43.39 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=23.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+|++.|.+|+||||.+--+|..+..
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 59999999999999999999987654
No 296
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=76.31 E-value=1.3 Score=46.10 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=18.5
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHHh
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILID 442 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~~ 442 (444)
+|||+|+ |||||.+-|+..|...
T Consensus 66 vI~VtGTNGKtST~~~l~~iL~~~ 89 (487)
T 2vos_A 66 SIHIAGTNGKTSVARMVDALVTAL 89 (487)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCcHHHHHHHHHHHHHc
Confidence 4566666 8999999999998764
No 297
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=75.72 E-value=2 Score=44.44 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
....|++||..||||||.+..|.+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999765
No 298
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=75.36 E-value=1.2 Score=47.75 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.6
Q ss_pred CeEEEEEeeCCCChhhHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA 436 (444)
+.+|++||+.||||||.|-.|+
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~ 59 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLA 59 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHhHc
Confidence 4689999999999999998775
No 299
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=74.13 E-value=1.6 Score=44.69 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=17.7
Q ss_pred EEeeCCC-ChhhHHHHHHHHHHH
Q 013364 420 FVGVNGV-GKSTNLAKVKLIILI 441 (444)
Q Consensus 420 fVGvNGV-GKTTTlAKLA~~l~~ 441 (444)
+|||+|+ |||||.+-|+..|..
T Consensus 54 vI~VtGTNGKgSt~~~l~~iL~~ 76 (437)
T 3nrs_A 54 IFTVAGTNGKGTTCCTLEAILLA 76 (437)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHH
T ss_pred EEEEECCcChHHHHHHHHHHHHH
Confidence 4556665 799999999998876
No 300
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=73.71 E-value=1.6 Score=40.68 Aligned_cols=21 Identities=19% Similarity=-0.001 Sum_probs=17.6
Q ss_pred EEEEeeCCCChhhHHHHHHHH
Q 013364 418 VVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 418 I~fVGvNGVGKTTTlAKLA~~ 438 (444)
++++|++|+|||.....++..
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~ 131 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINE 131 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 889999999999987766654
No 301
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=73.68 E-value=1.4 Score=45.71 Aligned_cols=27 Identities=19% Similarity=0.057 Sum_probs=24.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.++++.|++|+||||.+.-+|..+..+
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~ 269 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTA 269 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTT
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHh
Confidence 699999999999999999999887654
No 302
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=72.96 E-value=1.7 Score=48.37 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.3
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..|.-|+|.||.|+||||.+-.||..+
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999888654
No 303
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=72.94 E-value=8.5 Score=48.95 Aligned_cols=26 Identities=31% Similarity=0.236 Sum_probs=22.6
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.-||+|||+|+||||.+--|+.-|..
T Consensus 907 hGvmlVGp~gsGKTt~~~~L~~al~~ 932 (3245)
T 3vkg_A 907 HGVMMVGPSGGGKTTSWEVYLEAIEQ 932 (3245)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHHTT
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46999999999999999999887643
No 304
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=72.88 E-value=2.9 Score=42.79 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.0
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA 436 (444)
..+..|++||..||||||.+-.|+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~ 216 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAML 216 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHh
Confidence 346789999999999999998876
No 305
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=72.65 E-value=2.7 Score=43.23 Aligned_cols=28 Identities=21% Similarity=0.109 Sum_probs=25.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
.-++++|+.|+||||.+..||....++|
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~~~ 203 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAENH 203 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 5899999999999999999999887764
No 306
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=72.59 E-value=1.2 Score=43.92 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.5
Q ss_pred eEEEEEeeCCCChhhHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA 436 (444)
..|+|||..||||||.+-.|+
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~ 52 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFV 52 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTT
T ss_pred CeEEEECCCCCCHHHHHHHHh
Confidence 489999999999999987664
No 307
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=72.45 E-value=2.1 Score=40.41 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=20.1
Q ss_pred EEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 418 VVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 418 I~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.++++++|+|||.....++..+..+
T Consensus 131 ~ll~~~tGsGKT~~~~~~~~~~~~~ 155 (282)
T 1rif_A 131 RILNLPTSAGRSLIQALLARYYLEN 155 (282)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred eEEEcCCCCCcHHHHHHHHHHHHHc
Confidence 3569999999999998888776543
No 308
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=72.10 E-value=2.2 Score=42.79 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=22.9
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
.++.-|+++|..|+||||.+..|.-++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~ 57 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIH 57 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHh
Confidence 457899999999999999998886544
No 309
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=71.61 E-value=1.7 Score=42.83 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=25.8
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
++|-+|+|=|.-|+||+|+|..|+.||..
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldp 112 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNP 112 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCT
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcc
Confidence 45789999999999999999999988754
No 310
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=71.51 E-value=2.4 Score=48.78 Aligned_cols=25 Identities=32% Similarity=0.239 Sum_probs=21.6
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.+.+|+++|+-|+||||.+..+++.
T Consensus 149 ~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCccHHHHHHHHHHh
Confidence 3679999999999999988888753
No 311
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=71.18 E-value=1.4 Score=45.95 Aligned_cols=23 Identities=30% Similarity=0.232 Sum_probs=19.7
Q ss_pred CeEEEEEeeCCCChhhHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
+..|+|||..||||||.+-.|+.
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~ 255 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLG 255 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999988764
No 312
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=70.81 E-value=2.3 Score=44.78 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.1
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.++++|.||+||||.|--|..-|..
T Consensus 169 HlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp SEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999888765543
No 313
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=70.75 E-value=1.8 Score=38.98 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=14.1
Q ss_pred EEEEEeeCCCChhhHH
Q 013364 417 VVVFVGVNGVGKSTNL 432 (444)
Q Consensus 417 vI~fVGvNGVGKTTTl 432 (444)
.+++++|||.|||...
T Consensus 53 ~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 53 DVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred CEEEECCCCCcHHHHH
Confidence 4899999999999873
No 314
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=70.73 E-value=2.3 Score=43.74 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=20.6
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
+...|+|||..||||||.+-.|..
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~ 344 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKL 344 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceeEEEEcCCCCCHHHHHHHHhc
Confidence 347899999999999999988753
No 315
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=70.49 E-value=2 Score=42.96 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=20.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
..|++||.+||||||.+-.|...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 46899999999999999888764
No 316
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=70.45 E-value=2.1 Score=42.78 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=20.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
..|+|||.+||||||.+-.|...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhh
Confidence 47999999999999999888654
No 317
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=70.06 E-value=4.7 Score=50.49 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.-|++|||+|+||||.+--||.-|..
T Consensus 924 ~gvmlvGptgsGKTt~~~~La~al~~ 949 (2695)
T 4akg_A 924 QALILVGKAGCGKTATWKTVIDAMAI 949 (2695)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46999999999999999999877653
No 318
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=70.06 E-value=2.7 Score=37.13 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=15.9
Q ss_pred EEEEEeeCCCChhhHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA 436 (444)
.+++++|+|+|||+...-.+
T Consensus 40 ~~li~~~TGsGKT~~~~~~~ 59 (207)
T 2gxq_A 40 DLIGQARTGTGKTLAFALPI 59 (207)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHHHH
Confidence 58899999999998754433
No 319
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=69.78 E-value=2.8 Score=42.91 Aligned_cols=25 Identities=16% Similarity=-0.012 Sum_probs=21.6
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
-++++|++|.|||.....++.++..
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~~ 154 (510)
T 2oca_A 130 RRILNLPTSAGRSLIQALLARYYLE 154 (510)
T ss_dssp EEEEECCSTTTHHHHHHHHHHHHHH
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999888887654
No 320
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=69.54 E-value=2.7 Score=51.18 Aligned_cols=29 Identities=21% Similarity=0.138 Sum_probs=24.8
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
++.+|+|+||.|+||||.+.-+|.-..++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~ 1454 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE 1454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999998888765544
No 321
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=69.02 E-value=1.7 Score=43.25 Aligned_cols=20 Identities=50% Similarity=0.511 Sum_probs=18.0
Q ss_pred EEEEEeeCCCChhhHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA 436 (444)
.|+|||..||||||.|..|+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~ 179 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVS 179 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSE
T ss_pred eeeeeCCCCCCHHHHHHHHH
Confidence 68999999999999998764
No 322
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=68.36 E-value=2.2 Score=44.25 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.3
Q ss_pred CeEEEEEeeCCCChhhHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
-.++++.||-|+||||.|.+++.
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Confidence 47999999999999999988753
No 323
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=68.08 E-value=11 Score=34.49 Aligned_cols=56 Identities=23% Similarity=0.164 Sum_probs=39.9
Q ss_pred hcccCC---CceeeccCCCceeeE-EEEecccceEEEEEeccccchhhHHHHHHHHHHHHHHhcCC
Q 013364 40 EERSGL---ASFNYDSAGAAYTLK-WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDP 101 (444)
Q Consensus 40 EeR~~~---~~~~~~~~~d~y~lk-w~~~Ne~~LVFVvvYQ~iL~L~yvD~LL~~vk~~F~~~y~~ 101 (444)
=+|... .+|.+ +.|..+ |...| ||+|+++=-+-..-.-.=.||+.|+.+|...|+.
T Consensus 49 l~r~~~~~r~s~~~----~~y~fH~y~~~~--gl~yl~itd~~yp~r~AF~fL~ei~~eF~~~~~~ 108 (199)
T 3kyq_A 49 VERSAKGSRASVKE----QEYLCHVYVRSD--SLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDR 108 (199)
T ss_dssp HHTSCTTEEEEEEC----SSEEEEEEECTT--SEEEEEEEETTSCHHHHHHHHHHHHHHHHHHSCG
T ss_pred HhcCCCCCeEEEEe----CCEEEEEEEecC--CEEEEEEECCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 345543 35888 999999 77655 7888888665555444445788889999999974
No 324
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=67.57 E-value=1.3 Score=47.31 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=18.5
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
--|+|+|+.|+|||+.+--||..
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTT
T ss_pred cceEEECCCchHHHHHHHHHHHh
Confidence 36999999999999977665543
No 325
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=67.00 E-value=8.4 Score=37.04 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=18.8
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
+.+..+++++|||.|||+...-.+.
T Consensus 42 ~~~~~~lv~a~TGsGKT~~~~~~~~ 66 (395)
T 3pey_A 42 NPPRNMIAQSQSGTGKTAAFSLTML 66 (395)
T ss_dssp SSCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3346789999999999987554433
No 326
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=66.90 E-value=11 Score=43.79 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=21.5
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
...|++||..|+||||.+..|..-
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Confidence 467999999999999999999864
No 327
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=65.92 E-value=3.1 Score=41.04 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.1
Q ss_pred eEEEEEeeCCCChhhHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA 436 (444)
.-|+|+|+.|+||||++.-|.
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~ 165 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELI 165 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHH
Confidence 679999999999999876554
No 328
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=65.90 E-value=1.7 Score=45.30 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=20.7
Q ss_pred CeEEEEEeeCCCChhhHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
+..|+|||..||||||.+-.|+.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~ 265 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLN 265 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHC
Confidence 47899999999999999998875
No 329
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=65.48 E-value=3.4 Score=45.00 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.3
Q ss_pred CCeEEEEEeeCCCChhhHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA 436 (444)
.+..|+|||..||||||.|-.|+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLl 90 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALI 90 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 35789999999999999998775
No 330
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=65.30 E-value=2.2 Score=47.40 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=22.4
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.|.-|+|.||.|+|||.....||..+.
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhC
Confidence 466799999999999988888887543
No 331
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=64.27 E-value=2.6 Score=43.24 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=19.7
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA 436 (444)
.....|+|||..||||||.+-.|.
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~ 55 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALV 55 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 446789999999999999876553
No 332
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=63.74 E-value=4.4 Score=35.74 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=14.7
Q ss_pred eEEEEEeeCCCChhhHHH
Q 013364 416 YVVVFVGVNGVGKSTNLA 433 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlA 433 (444)
..+++++|||+|||....
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 358899999999996544
No 333
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=63.55 E-value=4.4 Score=42.51 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=22.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.-+++++++|+|||.+...++..|...
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l~~~ 225 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKLWSA 225 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCChHHHHHHHHHHHHhc
Confidence 356888999999999988888887653
No 334
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=63.28 E-value=4.4 Score=38.65 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=19.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..+++++|+|.|||+.....+..+
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 478899999999999876655544
No 335
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=62.43 E-value=2.6 Score=44.60 Aligned_cols=18 Identities=50% Similarity=0.706 Sum_probs=16.2
Q ss_pred eEEEEEeeCCCChhhHHH
Q 013364 416 YVVVFVGVNGVGKSTNLA 433 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlA 433 (444)
.+++|+|+.|.||||+.+
T Consensus 214 ~~~~ffGlSGtGKTTLs~ 231 (524)
T 1ii2_A 214 DVTVFFGLSGTGKTTLSA 231 (524)
T ss_dssp CEEEEECCTTSSHHHHHC
T ss_pred CEEEEEccCCcchhhhhh
Confidence 599999999999999754
No 336
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=62.34 E-value=2.6 Score=44.65 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=16.1
Q ss_pred eEEEEEeeCCCChhhHHH
Q 013364 416 YVVVFVGVNGVGKSTNLA 433 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlA 433 (444)
.+++|+|+.|+||||+.+
T Consensus 236 ~~~~ffGlSGtGKTTLs~ 253 (532)
T 1ytm_A 236 NTAIFFGLSGTGKTTLST 253 (532)
T ss_dssp SEEEEECCTTSSHHHHHC
T ss_pred eEEEEEecCCCCHHHHhh
Confidence 599999999999999763
No 337
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=61.94 E-value=3.3 Score=51.88 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=17.3
Q ss_pred eEEEEEeeCCCChhhHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA 436 (444)
.-|+|+||+|+|||+++..+.
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l 1288 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNAL 1288 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 468999999999999984443
No 338
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=61.83 E-value=4.4 Score=43.26 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=20.9
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
....|++||..+|||||.+..|.+
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHH
T ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
No 339
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=61.77 E-value=5.3 Score=36.22 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=15.4
Q ss_pred eEEEEEeeCCCChhhHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAK 434 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAK 434 (444)
..++++++||.|||+...-
T Consensus 63 ~~~li~a~TGsGKT~~~~~ 81 (236)
T 2pl3_A 63 KDVLGAAKTGSGKTLAFLV 81 (236)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHHH
Confidence 3588999999999996544
No 340
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=60.66 E-value=7.7 Score=36.23 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=14.3
Q ss_pred EEEEEeeCCCChhhHHH
Q 013364 417 VVVFVGVNGVGKSTNLA 433 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlA 433 (444)
.++++++||+|||....
T Consensus 93 ~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 93 DLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCEECCCTTSCHHHHHH
T ss_pred cEEEEccCCCCchHHHH
Confidence 47899999999998644
No 341
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=60.60 E-value=4.6 Score=43.43 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=18.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
..++++||||+||||...-.+.
T Consensus 47 ~~~lv~apTGsGKT~~~~l~il 68 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEMGII 68 (715)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHHHHH
Confidence 5899999999999998654443
No 342
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=60.59 E-value=5.4 Score=47.88 Aligned_cols=29 Identities=21% Similarity=0.138 Sum_probs=25.2
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
+..+|++.|++|+||||.+..+|..+..+
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~ 759 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE 759 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHc
Confidence 34799999999999999999999887654
No 343
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=60.50 E-value=6 Score=36.69 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.2
Q ss_pred EEEEEeeCCCChhhHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKV 435 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKL 435 (444)
.++++++||+|||+...-.
T Consensus 82 ~~lv~a~TGsGKT~~~~~~ 100 (249)
T 3ber_A 82 DIIGLAETGSGKTGAFALP 100 (249)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred CEEEEcCCCCCchhHhHHH
Confidence 5889999999999874433
No 344
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=60.21 E-value=4.2 Score=40.10 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCCCcchhhHhHHHhhhcCCCeEEEEEeeCCCChhhHHHHH
Q 013364 382 VQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435 (444)
Q Consensus 382 v~~~l~~~L~~iL~p~~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKTTTlAKL 435 (444)
+...|...|...|.|...+. .... .-.| .-|+|.|+.|+||||+..-|
T Consensus 120 ~~~~L~~~l~~~la~~~~~H---~~~v-~~~g--~gvli~G~sG~GKStlal~l 167 (312)
T 1knx_A 120 LSFTVETYINEQFATVAQIH---GVLL-EVFG--VGVLLTGRSGIGKSECALDL 167 (312)
T ss_dssp GTTTHHHHHHHHTCCCEEEE---EEEE-EETT--EEEEEEESSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcceeE---EEEE-EECC--EEEEEEcCCCCCHHHHHHHH
Confidence 33445556666766543221 0000 0122 57999999999999877544
No 345
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=59.69 E-value=13 Score=35.96 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=15.9
Q ss_pred CCeEEEEEeeCCCChhhHH
Q 013364 414 KPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTl 432 (444)
.+..+++++|||.|||...
T Consensus 63 ~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 63 PPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp SCCCEEEECCTTSCHHHHH
T ss_pred CCCeEEEECCCCchHHHHH
Confidence 3467899999999999864
No 346
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=59.37 E-value=5.6 Score=35.57 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=16.7
Q ss_pred EEEEEeeCCCChhhHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.+++++++|.|||....-.+..
T Consensus 53 ~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 53 DVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEECCCCCchhhhhhHHHHH
Confidence 4889999999999765544433
No 347
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=59.34 E-value=4.4 Score=44.08 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=14.5
Q ss_pred eEEEEEeeCCCChhh
Q 013364 416 YVVVFVGVNGVGKST 430 (444)
Q Consensus 416 ~vI~fVGvNGVGKTT 430 (444)
.+|+++||||+|||+
T Consensus 156 k~vlv~apTGSGKT~ 170 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTY 170 (677)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred CEEEEEcCCCCCHHH
Confidence 799999999999999
No 348
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=59.14 E-value=3.1 Score=44.04 Aligned_cols=18 Identities=44% Similarity=0.674 Sum_probs=16.2
Q ss_pred eEEEEEeeCCCChhhHHH
Q 013364 416 YVVVFVGVNGVGKSTNLA 433 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlA 433 (444)
.+++|+|+.|+||||+.+
T Consensus 242 ~~~lffGlSGtGKTTLs~ 259 (540)
T 2olr_A 242 DVAVFFGLSGTGKTTLST 259 (540)
T ss_dssp CEEEEECSTTSSHHHHHC
T ss_pred CEEEEEccCCCCHHHHhc
Confidence 699999999999999753
No 349
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=58.63 E-value=4.7 Score=41.53 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
....|++||--++||||.+..|.+
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CeeEEEEEECCCCCHHHHHHHHHH
Confidence 346899999999999999998865
No 350
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=58.57 E-value=6.9 Score=35.92 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=15.6
Q ss_pred EEEEEeeCCCChhhHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA 436 (444)
.++++++||+|||....-.+
T Consensus 62 ~~l~~a~TGsGKT~~~~~~~ 81 (253)
T 1wrb_A 62 DIMACAQTGSGKTAAFLIPI 81 (253)
T ss_dssp CEEEECCTTSSHHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHHHH
Confidence 47889999999998654443
No 351
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=58.52 E-value=15 Score=36.08 Aligned_cols=14 Identities=43% Similarity=0.646 Sum_probs=13.1
Q ss_pred EEEEEeeCCCChhh
Q 013364 417 VVVFVGVNGVGKST 430 (444)
Q Consensus 417 vI~fVGvNGVGKTT 430 (444)
.+++++|||+|||+
T Consensus 38 ~~lv~apTGsGKT~ 51 (414)
T 3oiy_A 38 SFTMVAPTGVGKTT 51 (414)
T ss_dssp CEECCSCSSSSHHH
T ss_pred CEEEEeCCCCCHHH
Confidence 68899999999999
No 352
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=57.96 E-value=8.8 Score=44.23 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=22.2
Q ss_pred hcCCCeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 411 EQRKPYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 411 ~~~~p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
..++|.-+++||++|.|||....-.|+.+
T Consensus 620 ~~g~p~d~ll~~~TGsGKT~val~aa~~~ 648 (1151)
T 2eyq_A 620 CQPLAMDRLVCGDVGFGKTEVAMRAAFLA 648 (1151)
T ss_dssp HSSSCCEEEEECCCCTTTHHHHHHHHHHH
T ss_pred hcCCcCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35778899999999999998755444443
No 353
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=56.55 E-value=2.6 Score=53.43 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=16.8
Q ss_pred EEEEEeeCCCChhhHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA 436 (444)
-|+||||+|+|||++++...
T Consensus 1306 pvLL~GptGtGKT~li~~~L 1325 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTL 1325 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHG
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 48999999999999886543
No 354
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=56.04 E-value=6.4 Score=42.06 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=22.2
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
-++++|.+|+|||+.|.-|...|..+
T Consensus 216 HlLIaG~TGSGKS~~L~tlI~sLl~~ 241 (574)
T 2iut_A 216 HLLVAGTTGSGKSVGVNAMLLSILFK 241 (574)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred eeEEECCCCCCHHHHHHHHHHHHHHh
Confidence 58999999999999999887776543
No 355
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=55.18 E-value=5.8 Score=41.65 Aligned_cols=28 Identities=21% Similarity=0.180 Sum_probs=23.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHhc
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILIDF 443 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~~ 443 (444)
.-+.++|..||||||.+.-|+....++|
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~ 193 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAH 193 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTC
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhC
Confidence 5799999999999999999998755443
No 356
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=55.16 E-value=4.4 Score=36.39 Aligned_cols=20 Identities=20% Similarity=0.116 Sum_probs=15.4
Q ss_pred EEEEEeeCCCChhhHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA 436 (444)
.++++++||+|||....-.+
T Consensus 43 ~~lv~a~TGsGKT~~~~~~~ 62 (219)
T 1q0u_A 43 SMVGQSQTGTGKTHAYLLPI 62 (219)
T ss_dssp CEEEECCSSHHHHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHHHH
Confidence 57899999999998644433
No 357
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=54.51 E-value=17 Score=36.74 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=15.7
Q ss_pred CCeEEEEEeeCCCChhhH
Q 013364 414 KPYVVVFVGVNGVGKSTN 431 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTT 431 (444)
.+..++++||||+|||..
T Consensus 130 ~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 130 PPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp SCCEEEEECCSSSSHHHH
T ss_pred CCCcEEEEcCCCCchhHH
Confidence 357899999999999976
No 358
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=54.37 E-value=6 Score=41.36 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=23.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
.-+.++|+.||||||.+.-||....++
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~ 180 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKA 180 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTT
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhh
Confidence 689999999999999999999865444
No 359
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=54.19 E-value=7 Score=36.77 Aligned_cols=20 Identities=30% Similarity=0.262 Sum_probs=16.1
Q ss_pred EEEEEeeCCCChhhHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA 436 (444)
.+++++|||.|||......+
T Consensus 33 ~~lv~~~TGsGKT~~~~~~~ 52 (337)
T 2z0m_A 33 NVVVRAKTGSGKTAAYAIPI 52 (337)
T ss_dssp CEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEcCCCCcHHHHHHHHH
Confidence 58899999999998765444
No 360
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=54.08 E-value=4.7 Score=36.88 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=14.6
Q ss_pred EEEEEeeCCCChhhHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAK 434 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAK 434 (444)
.++++++||+|||....-
T Consensus 69 ~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 69 DVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp CEEECCCSSHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHH
Confidence 488999999999976443
No 361
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=54.02 E-value=7.8 Score=40.04 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=21.9
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHH
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLII 439 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l 439 (444)
-.||++||+..+||||.|-.|..++
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~~ 91 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRYM 91 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhhhc
Confidence 3689999999999999999987664
No 362
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=53.96 E-value=8.2 Score=34.74 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=14.1
Q ss_pred EEEEEeeCCCChhhHHH
Q 013364 417 VVVFVGVNGVGKSTNLA 433 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlA 433 (444)
-+++++|||.|||....
T Consensus 59 ~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 59 DLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred CEEEECCCCChHHHHHH
Confidence 46899999999998643
No 363
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=53.82 E-value=9.2 Score=41.06 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=15.6
Q ss_pred eEEEEEeeCCCChhhHHH
Q 013364 416 YVVVFVGVNGVGKSTNLA 433 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlA 433 (444)
..++++||||+|||+...
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp SCEEEECSSHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 478999999999998754
No 364
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=53.78 E-value=9.1 Score=34.97 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=14.8
Q ss_pred EEEEEeeCCCChhhHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAK 434 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAK 434 (444)
.+++++|||+|||....-
T Consensus 68 ~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 68 DMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp CEEEEECTTSCHHHHHHH
T ss_pred CEEEECCCcCHHHHHHHH
Confidence 588899999999987443
No 365
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=53.35 E-value=6.2 Score=40.74 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=18.4
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.+..+++++|||+|||....-.+.
T Consensus 157 ~~~~~ll~apTGsGKT~~~~~~il 180 (508)
T 3fho_A 157 PPRNMIGQSQSGTGKTAAFALTML 180 (508)
T ss_dssp SCCCEEEECCSSTTSHHHHHHHHH
T ss_pred CCCCEEEECCCCccHHHHHHHHHH
Confidence 346889999999999987554433
No 366
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=53.18 E-value=9.7 Score=42.05 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=23.3
Q ss_pred HHHhhhcCCCeEEEEEeeCCCChhhHHHHHHHH
Q 013364 406 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 406 i~~~~~~~~p~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
|......+.|..++++|++|+|||....-.+..
T Consensus 380 I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~ 412 (780)
T 1gm5_A 380 IRNDMISEKPMNRLLQGDVGSGKTVVAQLAILD 412 (780)
T ss_dssp HHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHH
T ss_pred HHhhccccCCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 333334566778999999999999876554443
No 367
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=52.48 E-value=8.4 Score=35.07 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=13.9
Q ss_pred EEEEEeeCCCChhhHH
Q 013364 417 VVVFVGVNGVGKSTNL 432 (444)
Q Consensus 417 vI~fVGvNGVGKTTTl 432 (444)
.+++++|||+|||...
T Consensus 68 ~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 68 ELLASAPTGSGKTLAF 83 (245)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred CEEEECCCCCcHHHHH
Confidence 4799999999999863
No 368
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=51.94 E-value=5.5 Score=41.51 Aligned_cols=26 Identities=4% Similarity=0.033 Sum_probs=22.1
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.-+.++|..||||||.++-||.+...
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45777899999999999999988653
No 369
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=50.81 E-value=10 Score=39.37 Aligned_cols=25 Identities=20% Similarity=0.103 Sum_probs=22.0
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.||++||+.++||||.+-.|..++.
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~ 92 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMY 92 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHHHHhh
Confidence 6899999999999999998877663
No 370
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=50.29 E-value=6.2 Score=41.02 Aligned_cols=25 Identities=8% Similarity=-0.007 Sum_probs=21.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.-+.++|..||||||.++-||.+-.
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CEEEEecCCCCCchHHHHHHHHHHH
Confidence 4678899999999999999998754
No 371
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=50.00 E-value=10 Score=36.98 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=14.5
Q ss_pred eEEEEEeeCCCChhhHHH
Q 013364 416 YVVVFVGVNGVGKSTNLA 433 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlA 433 (444)
..+++++|||+|||....
T Consensus 53 ~~~lv~a~TGsGKT~~~~ 70 (417)
T 2i4i_A 53 RDLMACAQTGSGKTAAFL 70 (417)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCHHHHHHH
Confidence 357899999999998543
No 372
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=49.92 E-value=8.8 Score=41.34 Aligned_cols=17 Identities=12% Similarity=-0.050 Sum_probs=15.3
Q ss_pred eEEEEEeeCCCChhhHH
Q 013364 416 YVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTl 432 (444)
..++++||||+|||+..
T Consensus 40 ~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 40 KNALISIPTASGKTLIA 56 (720)
T ss_dssp CEEEEECCGGGCHHHHH
T ss_pred CcEEEEcCCccHHHHHH
Confidence 58999999999999865
No 373
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=49.51 E-value=8.6 Score=34.81 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=14.2
Q ss_pred EEEEEeeCCCChhhHHH
Q 013364 417 VVVFVGVNGVGKSTNLA 433 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlA 433 (444)
-++++++||.|||....
T Consensus 63 ~~l~~a~TGsGKT~~~~ 79 (230)
T 2oxc_A 63 DLIVQAKSGTGKTCVFS 79 (230)
T ss_dssp CEEEECCTTSSHHHHHH
T ss_pred CEEEECCCCCcHHHHHH
Confidence 47889999999998743
No 374
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=48.93 E-value=6.6 Score=40.88 Aligned_cols=25 Identities=8% Similarity=-0.019 Sum_probs=21.4
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.-+.++|..||||||.++-||.+-.
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~ 176 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQAT 176 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHH
Confidence 4578899999999999999998754
No 375
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=48.87 E-value=9.5 Score=38.44 Aligned_cols=22 Identities=18% Similarity=-0.031 Sum_probs=17.7
Q ss_pred EEEEEeeCCCChhhHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.+++++++|.|||.....++..
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~ 131 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINE 131 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHH
Confidence 4889999999999987665554
No 376
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=48.45 E-value=10 Score=36.94 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=15.9
Q ss_pred EEEEEeeCCCChhhHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.+++++|+|.|||+...-.+.
T Consensus 60 ~~li~a~TGsGKT~~~~~~~~ 80 (400)
T 1s2m_A 60 DILARAKNGTGKTAAFVIPTL 80 (400)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHHH
Confidence 388999999999986544433
No 377
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=48.25 E-value=23 Score=33.81 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=14.8
Q ss_pred CeEEEEEeeCCCChhhH
Q 013364 415 PYVVVFVGVNGVGKSTN 431 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTT 431 (444)
+..++++++||+|||..
T Consensus 131 ~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCeEEEECCCCCCccHH
Confidence 46789999999999975
No 378
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=47.99 E-value=9 Score=37.32 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=15.7
Q ss_pred EEEEEeeCCCChhhHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA 436 (444)
.++++++||.|||+...-.+
T Consensus 79 ~~lv~a~TGsGKT~~~~~~~ 98 (414)
T 3eiq_A 79 DVIAQAQSGTGKTATFAISI 98 (414)
T ss_dssp CEEECCCSCSSSHHHHHHHH
T ss_pred CEEEECCCCCcccHHHHHHH
Confidence 37899999999998754433
No 379
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=46.32 E-value=13 Score=44.76 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=24.3
Q ss_pred CeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
..+|++.|+.|+||||.+--+|+...++
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~~ 410 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE 410 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 4799999999999999999998876543
No 380
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=45.86 E-value=11 Score=40.51 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.-+.++|+-||||||.+.-||.|
T Consensus 233 qr~~Ifgg~g~GKT~L~~~ia~~ 255 (600)
T 3vr4_A 233 GAAAVPGPFGAGKTVVQHQIAKW 255 (600)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEeeecCCCccHHHHHHHHHhc
Confidence 68999999999999999999886
No 381
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=45.82 E-value=12 Score=45.61 Aligned_cols=29 Identities=21% Similarity=0.138 Sum_probs=25.0
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHHHh
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~~~ 442 (444)
+..+|.+.|+.|+||||.+--+|+...++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~ 410 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE 410 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 35799999999999999999999877643
No 382
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=45.59 E-value=16 Score=38.22 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=26.9
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+.|-+|+|=|.-|+||+|+|..|..+|.-
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~p 69 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMDP 69 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSCG
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcCc
Confidence 467899999999999999999999988754
No 383
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=45.04 E-value=9.7 Score=40.60 Aligned_cols=23 Identities=22% Similarity=0.162 Sum_probs=21.3
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.-+.++|.-||||||.+.-||.|
T Consensus 222 qr~~Ifg~~g~GKT~l~~~ia~~ 244 (578)
T 3gqb_A 222 GTAAIPGPFGSGKSVTQQSLAKW 244 (578)
T ss_dssp CEEEECCCTTSCHHHHHHHHHHH
T ss_pred CEEeeeCCCCccHHHHHHHHHhc
Confidence 58999999999999999999886
No 384
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=43.52 E-value=7 Score=41.32 Aligned_cols=17 Identities=47% Similarity=0.702 Sum_probs=15.3
Q ss_pred eEEEEEeeCCCChhhHH
Q 013364 416 YVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTl 432 (444)
.+++|.|+.|.||||+.
T Consensus 226 ~~~~ffGlSGtGKTtLs 242 (529)
T 1j3b_A 226 DVAVFFGLSGTGKTTLS 242 (529)
T ss_dssp CEEEEEECTTSCHHHHT
T ss_pred cEEEEEccccCChhhHh
Confidence 69999999999999854
No 385
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=42.42 E-value=19 Score=37.31 Aligned_cols=14 Identities=36% Similarity=0.278 Sum_probs=12.4
Q ss_pred EEEEEeeCCCChhh
Q 013364 417 VVVFVGVNGVGKST 430 (444)
Q Consensus 417 vI~fVGvNGVGKTT 430 (444)
.+++++|||.|||.
T Consensus 42 d~lv~apTGsGKTl 55 (523)
T 1oyw_A 42 DCLVVMPTGGGKSL 55 (523)
T ss_dssp CEEEECSCHHHHHH
T ss_pred CEEEECCCCcHHHH
Confidence 57889999999996
No 386
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=41.89 E-value=15 Score=35.46 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=15.8
Q ss_pred eEEEEEeeCCCChhhHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA 436 (444)
..+++++|||.|||....-.+
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 358899999999997644333
No 387
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=40.44 E-value=17 Score=41.12 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=15.1
Q ss_pred eEEEEEeeCCCChhhHHH
Q 013364 416 YVVVFVGVNGVGKSTNLA 433 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlA 433 (444)
..+++++|||+|||+...
T Consensus 55 ~~vlv~apTGsGKTlv~~ 72 (997)
T 4a4z_A 55 DSVFVAAHTSAGKTVVAE 72 (997)
T ss_dssp CEEEEECCTTSCSHHHHH
T ss_pred CCEEEEECCCCcHHHHHH
Confidence 478999999999998533
No 388
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=40.40 E-value=22 Score=36.59 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=15.2
Q ss_pred eEEEEEeeCCCChhhHHH
Q 013364 416 YVVVFVGVNGVGKSTNLA 433 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlA 433 (444)
..+++++|||+|||....
T Consensus 112 ~~~lv~apTGsGKTl~~~ 129 (563)
T 3i5x_A 112 HDVIARAKTGTGKTFAFL 129 (563)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCCCccHHHH
Confidence 688999999999997533
No 389
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=40.21 E-value=15 Score=40.67 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=25.1
Q ss_pred CeEEEEEee-CCCChhhHHHHHHHHHHHh
Q 013364 415 PYVVVFVGV-NGVGKSTNLAKVKLIILID 442 (444)
Q Consensus 415 p~vI~fVGv-NGVGKTTTlAKLA~~l~~~ 442 (444)
...|++.|. +||||||..+=||.+|+++
T Consensus 34 ~~~l~I~gt~s~vGKT~vt~gL~r~l~~~ 62 (831)
T 4a0g_A 34 HPTYLIWSANTSLGKTLVSTGIAASFLLQ 62 (831)
T ss_dssp SCEEEEEESSSSSCHHHHHHHHHHHHHSC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 357999999 8999999999999999876
No 390
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=38.65 E-value=15 Score=35.87 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=15.7
Q ss_pred EEEEEeeCCCChhhHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA 436 (444)
.++++++||+|||....-.+
T Consensus 76 ~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 76 DVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CEEEECCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCchHHHHHHH
Confidence 38899999999997655443
No 391
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=38.30 E-value=41 Score=35.55 Aligned_cols=15 Identities=40% Similarity=0.321 Sum_probs=13.1
Q ss_pred EEEEEeeCCCChhhH
Q 013364 417 VVVFVGVNGVGKSTN 431 (444)
Q Consensus 417 vI~fVGvNGVGKTTT 431 (444)
-++++.|||.|||..
T Consensus 61 d~lv~~pTGsGKTl~ 75 (591)
T 2v1x_A 61 EVFLVMPTGGGKSLC 75 (591)
T ss_dssp CEEEECCTTSCTTHH
T ss_pred CEEEEECCCChHHHH
Confidence 488899999999964
No 392
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=38.04 E-value=17 Score=38.75 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=18.0
Q ss_pred eEEEEEeeCCCChhhHH-HHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNL-AKVKLII 439 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTl-AKLA~~l 439 (444)
..++++++||+|||+.. .-+...+
T Consensus 187 ~dvlv~a~TGSGKT~~~~lpil~~l 211 (618)
T 2whx_A 187 RLTIMDLHPGAGKTKRILPSIVREA 211 (618)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 58999999999999973 3344333
No 393
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=37.45 E-value=22 Score=38.79 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=25.5
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.++...|++-|-.|+|||.+.-.|-.||..
T Consensus 91 ~~~nQsIiisGESGAGKTe~tK~i~~yla~ 120 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEASKKIMQFLTF 120 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhHHHHHHHHHh
Confidence 345789999999999999999888888753
No 394
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=36.90 E-value=12 Score=37.77 Aligned_cols=21 Identities=52% Similarity=0.613 Sum_probs=19.0
Q ss_pred eEEEEEeeCCCChhhHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA 436 (444)
..|.+||..-|||||.+..|.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt 93 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLT 93 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHh
Confidence 479999999999999998875
No 395
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=36.85 E-value=11 Score=40.19 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=21.2
Q ss_pred eEEEEEeeCCCChhhHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
.-+.++|+-||||||.+.-||.|
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~ 250 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKW 250 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCHHHHHHHHHhc
Confidence 68999999999999999999876
No 396
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=36.41 E-value=11 Score=36.28 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.0
Q ss_pred EEEEEeeCCCChhhHHH
Q 013364 417 VVVFVGVNGVGKSTNLA 433 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlA 433 (444)
.+++++|||.|||....
T Consensus 60 ~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 60 DVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CEEECCCSSHHHHHHHH
T ss_pred CEEEECCCCChHHHHHH
Confidence 47899999999998643
No 397
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=36.37 E-value=7.2 Score=43.54 Aligned_cols=17 Identities=53% Similarity=0.769 Sum_probs=15.5
Q ss_pred eEEEEEeeCCCChhhHH
Q 013364 416 YVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTl 432 (444)
..++|.||-|+||||.+
T Consensus 37 ~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 37 ALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp SEEEEESSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 68999999999999865
No 398
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=35.94 E-value=19 Score=41.33 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=16.7
Q ss_pred eEEEEEeeCCCChhhHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~ 437 (444)
..++++|+||+|||+...-.+.
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~ 221 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIA 221 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHHH
Confidence 4679999999999986544333
No 399
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=35.19 E-value=25 Score=38.82 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=25.2
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.++...|++-|-.|+|||.+.-.|-.||.
T Consensus 169 ~~~nQsIiisGESGAGKTe~tK~i~~yla 197 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENTKKVIQYLA 197 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHHHHHHHHHH
Confidence 35678999999999999999988888775
No 400
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=34.49 E-value=23 Score=38.36 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=15.4
Q ss_pred CeEEEEEeeCCCChhhH
Q 013364 415 PYVVVFVGVNGVGKSTN 431 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTT 431 (444)
...++++|++|+|||+.
T Consensus 241 g~dvlv~apTGSGKTl~ 257 (673)
T 2wv9_A 241 RQLTVLDLHPGAGKTRR 257 (673)
T ss_dssp TCEEEECCCTTTTTTTT
T ss_pred CCeEEEEeCCCCCHHHH
Confidence 36899999999999997
No 401
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=34.48 E-value=26 Score=38.86 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=25.4
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.++...|++-|-.|+|||.+.-.|-.||.
T Consensus 153 ~~~nQsIiisGESGAGKTe~tK~i~~yla 181 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSAKYAMRYFA 181 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHHHHHHHHHH
Confidence 34678999999999999999988888875
No 402
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=33.74 E-value=30 Score=38.21 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=25.5
Q ss_pred CCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
++...|++-|-.|+|||.+.-.|-.||..
T Consensus 138 ~~nQsIiiSGESGAGKTe~tK~i~~yla~ 166 (784)
T 2v26_A 138 KLSQSIIVSGESGAGKTENTKFVLRYLTE 166 (784)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCCceehHHHHHHHHHh
Confidence 45689999999999999999998888864
No 403
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=33.66 E-value=16 Score=38.29 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=26.3
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+.|-+|+|=|.-|+||+|+|..|..+|.-
T Consensus 297 ~~~~vlIvfEG~DaAGKg~~Ik~l~~~ldp 326 (500)
T 3czp_A 297 RQHSLVAVFEGNDAAGKGGAIRRVTDALDP 326 (500)
T ss_dssp GGCEEEEEEEESTTSCHHHHHHHHHTTSCG
T ss_pred CCCCEEEEEeccCCCCHHHHHHHHHHhcCc
Confidence 467899999999999999999999887643
No 404
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=33.03 E-value=29 Score=39.53 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=25.3
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.++...|++-|-.|+|||.+.-.|-.||.
T Consensus 169 ~~~~QsIiisGESGAGKTe~~K~i~~yla 197 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTENTKKVIQYLA 197 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHHHHHHHHHH
Confidence 34678999999999999999998888875
No 405
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=32.90 E-value=31 Score=39.40 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=25.7
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.++...|++-|-.|+|||++.-.|-.||..
T Consensus 141 ~~~nQsIiiSGESGAGKTestK~im~yLa~ 170 (1052)
T 4anj_A 141 LKLSQSIIVSGESGAGKTENTKFVLRYLTE 170 (1052)
T ss_dssp HTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred hCCCceEEEecCCCCCHHHHHHHHHHHHHH
Confidence 345789999999999999999888888754
No 406
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=32.74 E-value=29 Score=39.39 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=25.8
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.++...|++-|-.|+|||.+.-.|-.||..
T Consensus 143 ~~~~QsIiisGESGAGKTe~~K~i~~yla~ 172 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTENTKKVIQYLAH 172 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhHHHHHHHHHH
Confidence 346789999999999999999998888753
No 407
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=32.56 E-value=29 Score=38.39 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=25.2
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.++...|++-|-.|+|||++.-.|-.||.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~tK~im~yla 196 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNTKRVIQYFA 196 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHHHHHHHhhh
Confidence 34678999999999999999988888874
No 408
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=30.72 E-value=39 Score=35.09 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=15.6
Q ss_pred eEEEEEeeCCCChhhHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAK 434 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAK 434 (444)
..++++.|||+|||....-
T Consensus 61 ~dvlv~apTGsGKTl~~~l 79 (579)
T 3sqw_A 61 HDVIARAKTGTGKTFAFLI 79 (579)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEcCCCcHHHHHHHH
Confidence 5789999999999985433
No 409
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=30.55 E-value=29 Score=38.31 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.4
Q ss_pred eEEEEEeeCCCChhhHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVK 436 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA 436 (444)
..|+|||..++||||.|--|.
T Consensus 52 p~I~vvG~~saGKSSllnaL~ 72 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFV 72 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 389999999999999987664
No 410
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=30.09 E-value=33 Score=39.33 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=25.4
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.++...|++-|-.|+|||.|.-.|-.||.
T Consensus 153 ~~~~QsIiisGESGAGKTe~~K~i~~yla 181 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVSAKYAMRYFA 181 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEcCCCCCCccchHHHHHHHHH
Confidence 34678999999999999999998888875
No 411
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=29.86 E-value=30 Score=38.55 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=25.6
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.++...|++-|-.|+|||.+.-.|-.||..
T Consensus 166 ~~~nQsIiiSGESGAGKTe~tK~i~~yla~ 195 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENTKKVIMYLAK 195 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhHHHHHHHHHH
Confidence 345689999999999999999988888753
No 412
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=29.68 E-value=34 Score=34.17 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=13.8
Q ss_pred EEEEEeeCCCChhhHH
Q 013364 417 VVVFVGVNGVGKSTNL 432 (444)
Q Consensus 417 vI~fVGvNGVGKTTTl 432 (444)
-++++++||+|||...
T Consensus 95 d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 95 DLMACAQTGSGKTAAF 110 (434)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred CEEEECCCCCCchHHH
Confidence 5889999999999853
No 413
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.57 E-value=58 Score=32.96 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=16.6
Q ss_pred CCCeEEEEEeeCCCChhhHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTl 432 (444)
|---.|+--|.+|+|||-|+
T Consensus 139 G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 139 GYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp TCCEEEEEESCTTSSHHHHH
T ss_pred CcceEEEEECCCCCCCceEe
Confidence 33357888999999999997
No 414
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=29.52 E-value=53 Score=32.56 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=15.1
Q ss_pred eEEEEEeeCCCChhhHH
Q 013364 416 YVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTl 432 (444)
-.|+--|.+|+|||-|+
T Consensus 87 ~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 87 VCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eeEEEeCCCCCCCceEe
Confidence 46788899999999998
No 415
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=29.29 E-value=31 Score=33.59 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=24.6
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.|-+|+|=|.-|+||.++|..|..||-
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ld 100 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMD 100 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcC
Confidence 578999999999999999999998874
No 416
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=28.18 E-value=25 Score=34.93 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=16.0
Q ss_pred EEEEEeeCCCChhhHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKL 437 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~ 437 (444)
.|++.|.+|+|||+....|..
T Consensus 162 ~vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 162 PVLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEecCCCcCHHHHHHHHHH
Confidence 469999999999985544443
No 417
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=28.18 E-value=24 Score=37.14 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=19.4
Q ss_pred eEEEEEeeCCCChhhH-HHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTN-LAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTT-lAKLA~~ 438 (444)
.-+.++|..||||||. +.-||..
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~ 199 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQ 199 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCccHHHHHHHHHh
Confidence 5799999999999999 5677654
No 418
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=27.66 E-value=35 Score=37.23 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=19.3
Q ss_pred EEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 417 VVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 417 vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.+++++|||.|||....-.+..+..
T Consensus 265 ~~ll~~~TGsGKTl~~~~~i~~~l~ 289 (797)
T 4a2q_A 265 NALICAPTGSGKTFVSILICEHHFQ 289 (797)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHHHH
Confidence 5889999999999876666655543
No 419
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=27.59 E-value=3.4e+02 Score=26.56 Aligned_cols=95 Identities=11% Similarity=0.264 Sum_probs=49.9
Q ss_pred HHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCCC
Q 013364 319 SMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRR 398 (444)
Q Consensus 319 ~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~~ 398 (444)
.+++.+...+.||.++...++. .++.-.+...-+-.++=.++- .|.. .+++ ..+.+++++.-.+
T Consensus 8 e~l~~~~~~~~Lt~eEa~~~~~----~il~G~~~d~QiaAfL~alr~--kget-------~eEi-~g~~~am~~~~~~-- 71 (346)
T 4hkm_A 8 QALQRTIEHREIFHDEMVDLMR----QIMRGEVSDAMVSAILTGLRV--KKET-------IGEI-AGAATVMREFSRR-- 71 (346)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHH----HHHTTCSCHHHHHHHHHHHHH--HCCC-------HHHH-HHHHHHHHHHSCC--
T ss_pred HHHHHHHcCCCCCHHHHHHHHH----HHHCCCCCHHHHHHHHHHHHH--HCcC-------HHHH-HHHHHHHHHhCCC--
Confidence 3566677778999997655554 466778887766666665543 2321 2233 2344455554432
Q ss_pred cchhhHhHHHhhhcCCCeEEEEEeeCCCChh-hHHHHHHHHH
Q 013364 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKS-TNLAKVKLII 439 (444)
Q Consensus 399 ~~d~l~~i~~~~~~~~p~vI~fVGvNGVGKT-TTlAKLA~~l 439 (444)
+++ ...+.+|=.||.-|+|+. ++|.=++..+
T Consensus 72 -v~~---------~~~~~~vD~~gTGGdg~~t~niSt~~a~v 103 (346)
T 4hkm_A 72 -VEV---------TDRRHMVDIVGTGGDGSHTFNISTCAMFV 103 (346)
T ss_dssp -CCC---------SCCTTEEEEECC------CCCHHHHHHHH
T ss_pred -CCC---------CCCccceeecCCCCCCccccCcHHHHHHH
Confidence 111 123457999999999863 3344444433
No 420
>1nh2_B Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 PDB: 1ytf_B*
Probab=27.35 E-value=99 Score=22.31 Aligned_cols=35 Identities=11% Similarity=0.237 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcc
Q 013364 335 LEPALKALKDRLMTKNVAEEIAEKLCESVAASLEG 369 (444)
Q Consensus 335 l~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g 369 (444)
+++++..++..+...+|...+..+|......+|.-
T Consensus 13 I~dVI~~vr~~F~~~Gvde~vL~eLk~~We~KL~~ 47 (53)
T 1nh2_B 13 VESVVNEVREDFENAGIDEQTLQDLKNIWQKKLTE 47 (53)
T ss_dssp HHHHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 56688889999999999999999999888887753
No 421
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=27.25 E-value=29 Score=39.99 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=25.7
Q ss_pred cCCCeEEEEEeeCCCChhhHHHHHHHHHHH
Q 013364 412 QRKPYVVVFVGVNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 412 ~~~p~vI~fVGvNGVGKTTTlAKLA~~l~~ 441 (444)
.++...|++-|-.|+|||.|.-.|-.||..
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~~k~~~~yla~ 195 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTENTKKVIQYLAV 195 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHHHHHHHHHHHH
T ss_pred cCCCcEEEEecCCCCCccHHHHHHHHHHHH
Confidence 346789999999999999999988888753
No 422
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=27.15 E-value=26 Score=39.90 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=13.2
Q ss_pred eEEEEEeeCCCChhh
Q 013364 416 YVVVFVGVNGVGKST 430 (444)
Q Consensus 416 ~vI~fVGvNGVGKTT 430 (444)
..+++++|||+|||+
T Consensus 72 ~dvlv~apTGSGKTl 86 (1054)
T 1gku_B 72 ESFAATAPTGVGKTS 86 (1054)
T ss_dssp CCEECCCCBTSCSHH
T ss_pred CCEEEEcCCCCCHHH
Confidence 368899999999997
No 423
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=27.15 E-value=61 Score=32.10 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=16.9
Q ss_pred CCCeEEEEEeeCCCChhhHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTl 432 (444)
|---.|+--|.+|+|||-|+
T Consensus 83 G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 83 GYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp TCCEEEEEECCTTSSHHHHH
T ss_pred CceeEEEEECCCCCCCcEec
Confidence 44467888999999999997
No 424
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=26.95 E-value=14 Score=41.95 Aligned_cols=17 Identities=41% Similarity=0.642 Sum_probs=15.1
Q ss_pred eEEEEEeeCCCChhhHH
Q 013364 416 YVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTl 432 (444)
..|+|.||.|+|||+..
T Consensus 45 ~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 45 KLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 69999999999999853
No 425
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=26.53 E-value=14 Score=41.98 Aligned_cols=17 Identities=41% Similarity=0.731 Sum_probs=15.1
Q ss_pred eEEEEEeeCCCChhhHH
Q 013364 416 YVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTl 432 (444)
..|+|.||.|+|||+..
T Consensus 47 ~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 47 ALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCcHHHHH
Confidence 68999999999999853
No 426
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=26.51 E-value=3.7e+02 Score=26.74 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=56.0
Q ss_pred HHHHHHccCCccCChhchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHcCCC
Q 013364 318 SSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPR 397 (444)
Q Consensus 318 ~~~~~~l~g~k~l~~edl~~~l~~l~~~Li~kdVa~~ia~~l~~~v~~~l~g~k~~~~~~~~~~v~~~l~~~L~~iL~p~ 397 (444)
..++..|...+.|+.++...+++ .++.-.+...-+-.++-.++- .|.. .+++ ..+.+++++...+-
T Consensus 27 ~~il~~l~~g~~Ls~eEa~~~~~----~i~~G~~~~~QiaAfL~Alr~--kGet-------~eEi-~g~~~am~~~~~~v 92 (377)
T 3r88_A 27 PQILGRLTDNRDLARGQAAWAMD----QIMTGNARPAQIAAFAVAMTM--KAPT-------ADEV-GELAGVMLSHAHPL 92 (377)
T ss_dssp HHHHHHHHTTCCCCTTHHHHHHH----HHHTTCSCHHHHHHHHHHHHH--HCCC-------HHHH-HHHHHHHHHHSCCC
T ss_pred HHHHHHHHCCCCCCHHHHHHHHH----HHHCCCCCHHHHHHHHHHHHH--hCcC-------HHHH-HHHHHHHHHhCCcC
Confidence 35888888888999998665555 467778887766666665543 2321 2233 34445555554321
Q ss_pred CcchhhHhHHHhhhcCCCeEEEEEeeCCCCh-----hhHHHHHH
Q 013364 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGK-----STNLAKVK 436 (444)
Q Consensus 398 ~~~d~l~~i~~~~~~~~p~vI~fVGvNGVGK-----TTTlAKLA 436 (444)
.. ......+|-.||.-|+|+ ||.+|-|+
T Consensus 93 ~~-----------~~~~~~~vD~~gTGGdg~~T~niSt~~A~v~ 125 (377)
T 3r88_A 93 PA-----------DTVPDDAVDVVGTGGDGVNTVNLSTMAAIVV 125 (377)
T ss_dssp CT-----------TCSCTTCEEEEECCCCSCCBCCHHHHHHHHH
T ss_pred CC-----------ccCCCCCeEEeCCCCCCcCccccHHHHHHHH
Confidence 11 011124788999999998 44555443
No 427
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=26.15 E-value=46 Score=32.69 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=16.8
Q ss_pred CCCeEEEEEeeCCCChhhHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTl 432 (444)
|---.|+--|.+|+|||-|+
T Consensus 76 G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 76 GYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp TCCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEEECCCCCCCceEe
Confidence 44457888999999999997
No 428
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=26.15 E-value=28 Score=34.46 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=18.7
Q ss_pred CCCeEEEEEeeCCCChhhHHHHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNLAKV 435 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTlAKL 435 (444)
.+...|+++|.-++||||.+--+
T Consensus 30 ~~~~klLlLG~geSGKST~~KQm 52 (353)
T 1cip_A 30 AREVKLLLLGAGESGKSTIVKQM 52 (353)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHH
T ss_pred cccceEEEEcCCCCCchhHHHHH
Confidence 35678999999999999987544
No 429
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=26.00 E-value=36 Score=36.85 Aligned_cols=18 Identities=33% Similarity=0.409 Sum_probs=15.4
Q ss_pred eEEEEEeeCCCChhhHHH
Q 013364 416 YVVVFVGVNGVGKSTNLA 433 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlA 433 (444)
.+++++++||+|||+-+.
T Consensus 233 ~~vlv~ApTGSGKT~a~~ 250 (666)
T 3o8b_A 233 QVAHLHAPTGSGKSTKVP 250 (666)
T ss_dssp EEEEEECCTTSCTTTHHH
T ss_pred CeEEEEeCCchhHHHHHH
Confidence 689999999999997544
No 430
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=25.93 E-value=40 Score=38.23 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=14.3
Q ss_pred EEEEEeeCCCChhhHH
Q 013364 417 VVVFVGVNGVGKSTNL 432 (444)
Q Consensus 417 vI~fVGvNGVGKTTTl 432 (444)
.+++++|||+|||+..
T Consensus 103 ~vLV~apTGSGKTlva 118 (1010)
T 2xgj_A 103 SVLVSAHTSAGKTVVA 118 (1010)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred CEEEECCCCCChHHHH
Confidence 5899999999999964
No 431
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=25.42 E-value=47 Score=33.02 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=16.9
Q ss_pred CCCeEEEEEeeCCCChhhHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTl 432 (444)
|---.|+--|.+|+|||-|+
T Consensus 79 G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 79 GYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp TCCEEEEEECSTTSSHHHHH
T ss_pred CCcceEEEECCCCCCcceEe
Confidence 44468889999999999997
No 432
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=25.41 E-value=76 Score=31.83 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=16.9
Q ss_pred CCCeEEEEEeeCCCChhhHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTl 432 (444)
|---.|+--|.+|+|||-|+
T Consensus 114 G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 114 GYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp TCCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEEeCCCCCCCceEe
Confidence 44467888999999999987
No 433
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=25.30 E-value=50 Score=32.76 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=16.9
Q ss_pred CCCeEEEEEeeCCCChhhHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTl 432 (444)
|---.|+--|.+|+|||-|+
T Consensus 76 G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 76 GYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp TCCEEEEEEESTTSSHHHHH
T ss_pred CCccceeeecCCCCCCCeEE
Confidence 44467888999999999997
No 434
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=25.18 E-value=30 Score=36.29 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=21.2
Q ss_pred eEEEEEeeCCCChhhH-HHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTN-LAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTT-lAKLA~~l~ 440 (444)
.-+.++|..||||||. +.-|+....
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHh
Confidence 5789999999999999 677777654
No 435
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=25.08 E-value=35 Score=39.11 Aligned_cols=14 Identities=43% Similarity=0.646 Sum_probs=13.0
Q ss_pred EEEEEeeCCCChhh
Q 013364 417 VVVFVGVNGVGKST 430 (444)
Q Consensus 417 vI~fVGvNGVGKTT 430 (444)
-+++++|||+|||+
T Consensus 95 dvlv~ApTGSGKTl 108 (1104)
T 4ddu_A 95 SFTMVAPTGVGKTT 108 (1104)
T ss_dssp CEEECCSTTCCHHH
T ss_pred CEEEEeCCCCcHHH
Confidence 57899999999999
No 436
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=25.02 E-value=37 Score=38.74 Aligned_cols=25 Identities=16% Similarity=0.016 Sum_probs=20.8
Q ss_pred eEEEEEeeCCCChhhHHHHHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTNLAKVKLIIL 440 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTlAKLA~~l~ 440 (444)
.-.+++.++|+|||-+...++.++.
T Consensus 301 ~~gli~~~TGSGKT~t~~~l~~ll~ 325 (1038)
T 2w00_A 301 SGGYIWHTTGSGKTLTSFKAARLAT 325 (1038)
T ss_dssp GSEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEecCCCCHHHHHHHHHHHHH
Confidence 4578899999999999988886554
No 437
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=24.92 E-value=28 Score=36.50 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=19.3
Q ss_pred eEEEEEeeCCCChhhH-HHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTN-LAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTT-lAKLA~~ 438 (444)
.-+.++|..||||||. +.-|+..
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~ 186 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQ 186 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGG
T ss_pred CEEEEECCCCCCchHHHHHHHHHh
Confidence 5789999999999999 6677653
No 438
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=23.58 E-value=54 Score=32.76 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=17.0
Q ss_pred CCCeEEEEEeeCCCChhhHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTl 432 (444)
|---.|+--|.+|+|||-|+
T Consensus 83 G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 83 GYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp TCCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEeecCCCCCCceEE
Confidence 44467888999999999997
No 439
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=23.42 E-value=45 Score=35.01 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.9
Q ss_pred CCeEEEEEeeCCCChhhHHHHHHHH
Q 013364 414 KPYVVVFVGVNGVGKSTNLAKVKLI 438 (444)
Q Consensus 414 ~p~vI~fVGvNGVGKTTTlAKLA~~ 438 (444)
|.+.|++||--+.||||+.=.|-|+
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~ 54 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLF 54 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHh
Confidence 4579999999999999999888765
No 440
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=23.42 E-value=40 Score=33.15 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=16.8
Q ss_pred CCCeEEEEEeeCCCChhhHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTl 432 (444)
|---.|+--|.+|+|||-|+
T Consensus 79 G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 79 GFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp TCCEEEEEESSTTSSHHHHH
T ss_pred CCEEEEEeECCCCCCCcEEE
Confidence 43467888999999999987
No 441
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=23.04 E-value=38 Score=33.03 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.1
Q ss_pred EEEEe---eCCCChhhHHHHHHHHHHH
Q 013364 418 VVFVG---VNGVGKSTNLAKVKLIILI 441 (444)
Q Consensus 418 I~fVG---vNGVGKTTTlAKLA~~l~~ 441 (444)
|..|| |=|+|||-++-.||.+|+.
T Consensus 38 VI~VGNitvGGTGKTP~vi~L~~~L~~ 64 (315)
T 4ehx_A 38 VISVGNLSVGGSGKTSFVMYLADLLKD 64 (315)
T ss_dssp EEEEEESBSSCCSHHHHHHHHHHHTTT
T ss_pred EEEECCEEeCCCChHHHHHHHHHHHhh
Confidence 44566 8899999999999999864
No 442
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=22.50 E-value=61 Score=32.51 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=16.5
Q ss_pred CCCeEEEEEeeCCCChhhHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTl 432 (444)
|---.|+--|.+|+|||-|+
T Consensus 100 G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 100 GFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp TCCEEEEEEESTTSSHHHHH
T ss_pred CCeeeEEeecCCCCCCCEeE
Confidence 33457888999999999986
No 443
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=22.46 E-value=36 Score=33.96 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=15.0
Q ss_pred eEEEEEeeCCCChhhHH
Q 013364 416 YVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTTl 432 (444)
-.|+--|.+|+|||-|+
T Consensus 86 ~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 86 CSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEeeCCCCCCCCEEE
Confidence 35888999999999987
No 444
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=22.34 E-value=59 Score=32.26 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=16.8
Q ss_pred CCCeEEEEEeeCCCChhhHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTl 432 (444)
|---.|+--|.+|+|||-|+
T Consensus 88 G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 88 GFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TCCEEEEEECSTTSSHHHHH
T ss_pred CCceeEEeecCCCCCCCEEe
Confidence 44467888999999999997
No 445
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=22.18 E-value=42 Score=33.64 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=16.4
Q ss_pred CCCeEEEEEeeCCCChhhHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTl 432 (444)
|.--.|+--|.+|+|||-|+
T Consensus 78 G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 78 GYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp TCEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEECCCCCCCeEee
Confidence 43457888999999999997
No 446
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=22.10 E-value=61 Score=32.00 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=16.7
Q ss_pred CCCeEEEEEeeCCCChhhHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTl 432 (444)
|.--.|+--|.+|+|||-|+
T Consensus 82 G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 82 GFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp TCCEEEEEESSTTSSHHHHH
T ss_pred hcCeeEEEecccCCCceEee
Confidence 43457888999999999997
No 447
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=22.08 E-value=69 Score=31.80 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=16.5
Q ss_pred CCCeEEEEEeeCCCChhhHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTl 432 (444)
|---.|+--|.+|+|||-|+
T Consensus 91 G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 91 GYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp TCCEEEEEEECTTSSHHHHH
T ss_pred CceeEEEeeCCCCCCCceEE
Confidence 33357888899999999997
No 448
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=21.66 E-value=29 Score=36.38 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=19.2
Q ss_pred eEEEEEeeCCCChhhH-HHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTN-LAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTT-lAKLA~~ 438 (444)
.-+.++|..||||||. +.-|+..
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~ 187 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQ 187 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTC
T ss_pred CEEEEecCCCCCccHHHHHHHHHh
Confidence 5789999999999999 6677653
No 449
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=21.12 E-value=32 Score=36.15 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=19.2
Q ss_pred eEEEEEeeCCCChhhH-HHHHHHH
Q 013364 416 YVVVFVGVNGVGKSTN-LAKVKLI 438 (444)
Q Consensus 416 ~vI~fVGvNGVGKTTT-lAKLA~~ 438 (444)
.-+.++|.-||||||. +.-|+.+
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT
T ss_pred CEEEeecCCCCCcchHHHHHHHhh
Confidence 5789999999999999 5667654
No 450
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=21.02 E-value=66 Score=31.93 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=16.5
Q ss_pred CCCeEEEEEeeCCCChhhHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTl 432 (444)
|---.|+--|.+|+|||-|+
T Consensus 104 G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 104 GYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TCCEEEEEECCTTSSHHHHH
T ss_pred CCceEEEEeCCCCCCceeee
Confidence 33357888999999999997
No 451
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=20.59 E-value=64 Score=31.95 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.7
Q ss_pred CCCeEEEEEeeCCCChhhHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTl 432 (444)
|---.|+--|.+|+|||-|+
T Consensus 93 G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 93 GFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp TCCEEEEEESSTTSSHHHHH
T ss_pred CCceEEEEecCCCCCCCeEE
Confidence 33457888999999999997
No 452
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=20.58 E-value=67 Score=32.02 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=16.6
Q ss_pred CCCeEEEEEeeCCCChhhHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTl 432 (444)
|---.|+--|.+|+|||-|+
T Consensus 88 G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 88 GYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp TCCEEEEEECSTTSSHHHHH
T ss_pred CCeeEEEEeCCCCCCCceEe
Confidence 33457888999999999997
No 453
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=20.52 E-value=67 Score=32.11 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=16.7
Q ss_pred CCCeEEEEEeeCCCChhhHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTl 432 (444)
|---.|+--|.+|+|||-|+
T Consensus 99 G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 99 GYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp TCCEEEEEECSTTSSHHHHH
T ss_pred CceEEEEeecCCCCCcceec
Confidence 33468889999999999986
No 454
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=20.51 E-value=72 Score=31.72 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=16.2
Q ss_pred CCCeEEEEEeeCCCChhhHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTl 432 (444)
|---.|+--|.+|+|||-|+
T Consensus 102 G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 102 GYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp TCCEEEEEEESTTSSHHHHH
T ss_pred CCceEEEEECCCCCCCceEe
Confidence 33357888899999999986
No 455
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=20.44 E-value=65 Score=32.53 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=16.9
Q ss_pred CCCeEEEEEeeCCCChhhHH
Q 013364 413 RKPYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 413 ~~p~vI~fVGvNGVGKTTTl 432 (444)
|---.|+--|.+|+|||-|+
T Consensus 97 G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 97 GQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TCCEEEEEESCTTSSHHHHH
T ss_pred CceeeEeeecCCCCCCCeEe
Confidence 44467888999999999997
No 456
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=20.34 E-value=70 Score=31.82 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=15.6
Q ss_pred CeEEEEEeeCCCChhhHH
Q 013364 415 PYVVVFVGVNGVGKSTNL 432 (444)
Q Consensus 415 p~vI~fVGvNGVGKTTTl 432 (444)
--.|+--|.+|+|||-|+
T Consensus 89 n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 89 NCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp EEEEEEEECTTSSHHHHH
T ss_pred ceEEEEeCCCCCCCceEE
Confidence 357888999999999987
Done!