Query 013365
Match_columns 444
No_of_seqs 483 out of 2330
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:07:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 2.1E-52 4.6E-57 396.3 27.7 357 27-386 57-449 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 6.4E-47 1.4E-51 359.0 27.9 306 19-330 104-441 (476)
3 KOG1427 Uncharacterized conser 100.0 1.1E-43 2.4E-48 316.3 17.7 322 20-349 57-400 (443)
4 KOG1427 Uncharacterized conser 100.0 8.6E-40 1.9E-44 291.4 18.9 281 91-379 20-325 (443)
5 KOG0783 Uncharacterized conser 99.9 2.6E-27 5.5E-32 235.6 15.3 304 32-349 136-450 (1267)
6 KOG0783 Uncharacterized conser 99.9 1.2E-26 2.7E-31 230.8 13.9 268 85-358 137-417 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 8.5E-23 1.8E-27 210.7 23.4 283 17-318 523-855 (3738)
8 KOG1428 Inhibitor of type V ad 99.9 1.3E-21 2.9E-26 202.0 20.9 338 18-379 478-871 (3738)
9 PF00415 RCC1: Regulator of ch 99.2 1.1E-11 2.4E-16 85.3 4.7 50 248-297 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.2 2.2E-11 4.9E-16 83.8 5.2 50 142-191 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.1 9E-11 2E-15 70.5 4.4 30 21-50 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.1 1.1E-10 2.4E-15 70.1 4.1 30 178-207 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.1 1.7E-12 3.7E-17 132.0 -6.7 148 118-312 8-156 (850)
14 KOG0941 E3 ubiquitin protein l 99.0 7.2E-12 1.6E-16 127.5 -6.8 173 19-197 14-199 (850)
15 PF11725 AvrE: Pathogenicity f 95.9 0.089 1.9E-06 59.3 12.3 281 20-349 490-815 (1774)
16 PF11725 AvrE: Pathogenicity f 93.5 0.29 6.4E-06 55.4 8.5 118 169-301 696-815 (1774)
17 COG4257 Vgb Streptogramin lyas 92.0 11 0.00023 35.2 16.3 234 26-314 61-302 (353)
18 KOG0315 G-protein beta subunit 91.7 11 0.00023 34.6 15.9 103 238-357 135-245 (311)
19 KOG3669 Uncharacterized conser 91.4 3.2 7E-05 42.2 12.0 70 125-200 228-299 (705)
20 KOG3669 Uncharacterized conser 87.3 31 0.00068 35.4 15.3 70 72-148 228-299 (705)
21 KOG0291 WD40-repeat-containing 85.8 53 0.0011 35.0 19.4 226 84-364 313-557 (893)
22 KOG0943 Predicted ubiquitin-pr 85.5 0.088 1.9E-06 57.1 -3.3 133 175-313 373-509 (3015)
23 KOG0943 Predicted ubiquitin-pr 83.8 0.31 6.7E-06 53.1 -0.2 126 228-357 372-505 (3015)
24 KOG0291 WD40-repeat-containing 83.1 69 0.0015 34.2 24.9 251 19-317 298-558 (893)
25 PHA03098 kelch-like protein; P 81.7 70 0.0015 33.2 17.2 16 134-150 382-397 (534)
26 PF07569 Hira: TUP1-like enhan 81.2 6.3 0.00014 35.8 7.3 35 12-46 6-40 (219)
27 KOG0315 G-protein beta subunit 79.2 53 0.0011 30.3 23.7 165 114-308 72-244 (311)
28 KOG2106 Uncharacterized conser 76.9 90 0.002 31.7 22.8 57 71-147 247-303 (626)
29 KOG1900 Nuclear pore complex, 76.1 1.5E+02 0.0033 33.9 18.7 208 84-308 93-339 (1311)
30 PF04841 Vps16_N: Vps16, N-ter 75.4 94 0.002 31.2 18.8 70 124-201 81-153 (410)
31 PF07569 Hira: TUP1-like enhan 74.7 19 0.00042 32.6 8.5 30 123-152 12-41 (219)
32 KOG1900 Nuclear pore complex, 71.1 2E+02 0.0043 33.0 16.3 215 32-256 93-339 (1311)
33 TIGR03300 assembly_YfgL outer 69.6 1.2E+02 0.0025 29.8 13.9 56 133-200 320-376 (377)
34 KOG0278 Serine/threonine kinas 69.1 92 0.002 28.8 11.0 98 114-231 135-236 (334)
35 smart00706 TECPR Beta propelle 68.7 12 0.00025 22.8 3.9 24 125-148 9-33 (35)
36 PF04762 IKI3: IKI3 family; I 68.5 2.1E+02 0.0045 32.3 19.2 47 293-357 593-639 (928)
37 TIGR01063 gyrA DNA gyrase, A s 66.3 2.1E+02 0.0046 31.6 23.6 162 26-201 544-716 (800)
38 PHA02713 hypothetical protein; 66.2 1.8E+02 0.0038 30.6 14.5 13 139-151 395-407 (557)
39 TIGR01062 parC_Gneg DNA topois 66.2 2E+02 0.0044 31.3 16.0 161 77-263 491-660 (735)
40 cd00200 WD40 WD40 domain, foun 66.0 98 0.0021 27.5 28.5 136 30-202 65-206 (289)
41 PF04841 Vps16_N: Vps16, N-ter 65.7 1.5E+02 0.0033 29.7 22.4 196 19-256 81-286 (410)
42 TIGR01063 gyrA DNA gyrase, A s 64.9 2.3E+02 0.0049 31.4 22.1 165 77-255 543-716 (800)
43 smart00706 TECPR Beta propelle 64.4 17 0.00037 22.0 4.1 24 177-200 9-33 (35)
44 PHA02713 hypothetical protein; 63.4 85 0.0018 33.0 11.5 15 188-202 345-359 (557)
45 COG4257 Vgb Streptogramin lyas 62.8 1.3E+02 0.0029 28.3 11.0 139 184-354 62-205 (353)
46 PF12341 DUF3639: Protein of u 62.2 23 0.0005 20.4 3.9 25 123-147 1-25 (27)
47 PF10168 Nup88: Nuclear pore c 61.2 2.5E+02 0.0054 30.6 18.6 119 30-149 34-177 (717)
48 KOG0646 WD40 repeat protein [G 60.3 1.9E+02 0.0042 29.0 17.5 156 125-308 83-246 (476)
49 PRK05560 DNA gyrase subunit A; 59.1 2.9E+02 0.0062 30.6 21.7 214 26-258 546-773 (805)
50 cd00200 WD40 WD40 domain, foun 57.7 1.4E+02 0.003 26.5 32.8 148 18-202 9-164 (289)
51 KOG0649 WD40 repeat protein [G 57.4 1.6E+02 0.0035 27.2 11.6 46 176-222 63-109 (325)
52 KOG0646 WD40 repeat protein [G 56.1 2.3E+02 0.0049 28.5 19.4 155 20-200 83-244 (476)
53 KOG0278 Serine/threonine kinas 55.8 1.7E+02 0.0037 27.1 13.0 148 166-357 135-287 (334)
54 PHA03098 kelch-like protein; P 55.4 2.6E+02 0.0056 29.0 16.7 18 134-152 335-352 (534)
55 KOG4693 Uncharacterized conser 55.3 1.8E+02 0.0039 27.2 14.6 15 240-255 243-257 (392)
56 KOG4441 Proteins containing BT 55.2 1.4E+02 0.0029 31.6 11.3 57 190-256 471-530 (571)
57 PRK14131 N-acetylneuraminic ac 54.5 2.2E+02 0.0048 28.0 21.5 18 134-151 131-148 (376)
58 PRK05560 DNA gyrase subunit A; 52.3 3.7E+02 0.0079 29.8 22.3 163 77-255 545-719 (805)
59 KOG1240 Protein kinase contain 51.0 1.7E+02 0.0038 33.3 11.2 120 125-256 1050-1180(1431)
60 PF06739 SBBP: Beta-propeller 49.6 21 0.00045 22.3 2.6 18 240-257 15-32 (38)
61 KOG4441 Proteins containing BT 46.8 2E+02 0.0044 30.3 11.1 57 244-308 471-530 (571)
62 TIGR03548 mutarot_permut cycli 45.1 2.8E+02 0.0061 26.4 11.8 18 293-310 216-233 (323)
63 TIGR02658 TTQ_MADH_Hv methylam 43.5 3.3E+02 0.0071 26.7 15.1 180 116-305 30-219 (352)
64 PLN02153 epithiospecifier prot 43.4 3.1E+02 0.0067 26.4 21.0 17 185-202 129-145 (341)
65 PF02239 Cytochrom_D1: Cytochr 43.3 3.4E+02 0.0073 26.8 17.0 159 125-316 28-198 (369)
66 KOG1240 Protein kinase contain 41.8 6E+02 0.013 29.3 16.3 78 19-101 1049-1130(1431)
67 KOG1408 WD40 repeat protein [F 41.7 4.8E+02 0.01 28.1 15.0 72 71-150 166-248 (1080)
68 KOG0289 mRNA splicing factor [ 41.2 3.9E+02 0.0084 26.9 10.9 131 3-148 320-457 (506)
69 PLN02153 epithiospecifier prot 39.1 3.6E+02 0.0079 25.9 21.4 17 81-99 130-146 (341)
70 PF04762 IKI3: IKI3 family; I 37.3 6.5E+02 0.014 28.4 22.2 29 17-45 425-455 (928)
71 TIGR03548 mutarot_permut cycli 37.0 3.8E+02 0.0082 25.6 12.5 18 134-152 116-133 (323)
72 TIGR03300 assembly_YfgL outer 35.6 4.3E+02 0.0092 25.7 23.4 53 292-354 321-376 (377)
73 KOG0649 WD40 repeat protein [G 34.5 3.8E+02 0.0082 24.8 18.9 48 124-172 63-111 (325)
74 KOG1034 Transcriptional repres 33.5 1.1E+02 0.0023 29.5 5.7 57 32-97 323-381 (385)
75 PHA02790 Kelch-like protein; P 32.7 3E+02 0.0065 28.2 9.6 13 139-151 315-327 (480)
76 PF06433 Me-amine-dh_H: Methyl 32.5 4.8E+02 0.01 25.4 11.1 197 128-354 32-255 (342)
77 PLN03215 ascorbic acid mannose 32.1 2E+02 0.0044 28.4 7.7 61 73-149 162-225 (373)
78 PRK13979 DNA topoisomerase IV 31.8 8E+02 0.017 27.8 21.4 204 80-304 516-767 (957)
79 PF13418 Kelch_4: Galactose ox 31.4 54 0.0012 21.2 2.6 18 28-45 3-20 (49)
80 PLN03215 ascorbic acid mannose 30.9 2.1E+02 0.0045 28.3 7.5 62 125-201 161-225 (373)
81 PRK14131 N-acetylneuraminic ac 28.6 5.7E+02 0.012 25.1 16.9 18 186-203 131-148 (376)
82 PF02239 Cytochrom_D1: Cytochr 27.7 6E+02 0.013 25.0 14.9 156 72-262 28-196 (369)
83 PF01436 NHL: NHL repeat; Int 27.4 1.3E+02 0.0027 17.1 3.5 17 135-151 5-21 (28)
84 PF03785 Peptidase_C25_C: Pept 27.4 1.1E+02 0.0024 22.8 3.8 34 123-156 15-49 (81)
85 KOG1275 PAB-dependent poly(A) 27.0 9.1E+02 0.02 27.0 11.7 33 334-366 319-351 (1118)
86 PF00167 FGF: Fibroblast growt 26.5 3.4E+02 0.0073 21.7 9.0 65 126-200 2-66 (122)
87 PF06433 Me-amine-dh_H: Methyl 26.1 2.5E+02 0.0053 27.4 7.0 153 180-355 32-211 (342)
88 KOG1230 Protein containing rep 25.9 6.9E+02 0.015 25.1 11.7 18 291-308 233-250 (521)
89 KOG1587 Cytoplasmic dynein int 24.9 8.3E+02 0.018 25.7 14.7 19 130-148 357-375 (555)
90 KOG0282 mRNA splicing factor [ 23.4 8E+02 0.017 25.0 10.5 151 72-254 347-502 (503)
91 PF10168 Nup88: Nuclear pore c 23.3 1E+03 0.022 26.1 12.0 121 187-307 34-177 (717)
92 PRK11138 outer membrane biogen 22.5 7.4E+02 0.016 24.3 14.4 136 28-200 256-391 (394)
93 PF03785 Peptidase_C25_C: Pept 21.1 1.3E+02 0.0027 22.5 3.1 33 176-208 16-49 (81)
94 KOG1034 Transcriptional repres 20.7 2.6E+02 0.0056 27.0 5.8 57 137-201 323-381 (385)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=2.1e-52 Score=396.29 Aligned_cols=357 Identities=31% Similarity=0.553 Sum_probs=292.6
Q ss_pred CCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCC-cCCeeeccC--CCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCc
Q 013365 27 GASHSVALLSGNIVCSWGRGEDGQLGHGDAEDR-LSPTQLSAL--DGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGR 103 (444)
Q Consensus 27 G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~-~~P~~v~~~--~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gq 103 (444)
-..|...+..-..||+||+|...|||.+..+.. ..|++.+.. +...|++++||..|+++|++| |+||+||.|..|+
T Consensus 57 ~~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~D-g~lyswG~N~~G~ 135 (476)
T COG5184 57 INKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHD-GNLYSWGDNDDGA 135 (476)
T ss_pred cccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCC-CCEEEeccCcccc
Confidence 355666888899999999999999999988765 889988877 667899999999999999999 9999999999999
Q ss_pred cCCCCC----------------CCceeeeeecc----cCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCC
Q 013365 104 LGHGNS----------------SDLFTPLPIKA----LHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTED 163 (444)
Q Consensus 104 lG~~~~----------------~~~~~p~~v~~----~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~ 163 (444)
||+... ....+|..+.. ....+|++++||.+++++|+++|+||+||....+.++.+....
T Consensus 136 Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~ 215 (476)
T COG5184 136 LGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKN 215 (476)
T ss_pred cccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccc
Confidence 998761 11345655554 2345899999999999999999999999998888888874443
Q ss_pred ccc----ceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecC
Q 013365 164 SLV----PQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW 239 (444)
Q Consensus 164 ~~~----p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~ 239 (444)
+.. +.++... ...|+++++|.+|.++|+++|+||.||+|..||||.........+..+..+. .-..|..|+||.
T Consensus 216 s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f-~i~~i~~vacG~ 293 (476)
T COG5184 216 SQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPF-AIRNIKYVACGK 293 (476)
T ss_pred cccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChh-hhhhhhhcccCc
Confidence 322 3333322 4579999999999999999999999999999999988776665555543222 123478899999
Q ss_pred ceEEEEeCCCCEEEEeCCCCCcccCCCCC----CceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecCCCcccc
Q 013365 240 RHTISVSSSGRLYSYGWSKYGQLGHGDFK----DHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVG 315 (444)
Q Consensus 240 ~hs~~lt~~G~vy~~G~n~~gqLG~~~~~----~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG 315 (444)
+|+++|+++|+||+||.|.+||||.++.. ....|.....+....|..|++|..|+++|..+|.||+||.+..+|||
T Consensus 294 ~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg 373 (476)
T COG5184 294 DHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLG 373 (476)
T ss_pred ceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCcccccc
Confidence 99999999999999999999999998321 23346666677777899999999999999999999999999999999
Q ss_pred cCC--CCCccCceEec--cCCCcEEecCCeeEEEeCCCCEEEEeCCCCCCCCCCCC-CCCCCCeEeeccccCCCce
Q 013365 316 VGD--NVDHCSPVQVK--FPLDQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGES-SDRNSPKIIEPLSLDGSKG 386 (444)
Q Consensus 316 ~g~--~~~~~~p~~v~--~~~~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~g~~-~~~~~P~~i~~l~~~~~~~ 386 (444)
..+ +.....|.++. ....+++||..|.++.+++|+||+||.|++||||.|+. .+...|+.+.+...++...
T Consensus 374 ~~~~~~~~~~~~~~ls~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~ 449 (476)
T COG5184 374 IQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNI 449 (476)
T ss_pred CcccceeecCCccccccccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccccccCCCce
Confidence 988 56666666665 33459999999999999999999999999999999975 5677888887643344433
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=6.4e-47 Score=359.02 Aligned_cols=306 Identities=31% Similarity=0.556 Sum_probs=251.8
Q ss_pred CCEEEEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCC----------------CCCcCCeeeccCC----CCcEEEEEe
Q 013365 19 RPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDA----------------EDRLSPTQLSALD----GHEIVSVTC 78 (444)
Q Consensus 19 ~~i~~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~----------------~~~~~P~~v~~~~----~~~i~~i~~ 78 (444)
..|+++|||+.|+++|+.||.||+||.|..|+||.... +....|..|+..+ ..++++++|
T Consensus 104 ~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~c 183 (476)
T COG5184 104 ASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLAC 183 (476)
T ss_pred eeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeec
Confidence 78999999999999999999999999999999998661 2356788887622 247999999
Q ss_pred cCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCc----eeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCC
Q 013365 79 GADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDL----FTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNG 154 (444)
Q Consensus 79 G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~----~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~g 154 (444)
|++++++++++ |+||.||....+.++.+...+. ..++|+... ...|++++.|.+|.++|+++|+||.||+|..|
T Consensus 184 g~e~svil~~~-G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkg 261 (476)
T COG5184 184 GWEISVILTAD-GRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKG 261 (476)
T ss_pred CCceEEEEccC-CcEEEecCccccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCccc
Confidence 99999999999 9999999988888887744333 235555554 45899999999999999999999999999999
Q ss_pred ccCCCCCCCcccceeeeccc-CCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCC----CccceeeeeeeecCC
Q 013365 155 QLGLGTTEDSLVPQKLQAFE-GVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRN----DRLIPEKVATVDLQR 229 (444)
Q Consensus 155 qlG~~~~~~~~~p~~v~~~~-~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~----~~~~p~~v~~~~~~~ 229 (444)
|||....+....+..+..+. -..|+.|+||.+|+++|+++|+||+||.|.+|||+.+... ....|.....+. .
T Consensus 262 qlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~--~ 339 (476)
T COG5184 262 QLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLS--G 339 (476)
T ss_pred ccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCC--C
Confidence 99998887665555554332 2347889999999999999999999999999999998221 112333333322 4
Q ss_pred CeEEEEEecCceEEEEeCCCCEEEEeCCCCCcccCCC--CCCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEee
Q 013365 230 EKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGD--FKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWG 307 (444)
Q Consensus 230 ~~i~~Ia~G~~hs~~lt~~G~vy~~G~n~~gqLG~~~--~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG 307 (444)
..|..|++|..|+++|..+|.||+||++..+|||..+ ......|+++..... +.+++||..|.++.+++|+||.||
T Consensus 340 ~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~~~--~~~v~~gt~~~~~~t~~gsvy~wG 417 (476)
T COG5184 340 VTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIK--LEQVACGTHHNIARTDDGSVYSWG 417 (476)
T ss_pred ceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCccccccccc--eEEEEecCccceeeccCCceEEec
Confidence 5689999999999999999999999999999999998 455556666655444 999999999999999999999999
Q ss_pred cCCCcccccCCCCCc-cCceEecc
Q 013365 308 WNKFGQVGVGDNVDH-CSPVQVKF 330 (444)
Q Consensus 308 ~n~~gqlG~g~~~~~-~~p~~v~~ 330 (444)
++++|+||+++.... ..|+.++.
T Consensus 418 ~ge~gnlG~g~~~~~~~~pt~i~~ 441 (476)
T COG5184 418 WGEHGNLGNGPKEADVLVPTLIRQ 441 (476)
T ss_pred CchhhhccCCchhhhccccccccc
Confidence 999999999887654 56666653
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.1e-43 Score=316.26 Aligned_cols=322 Identities=29% Similarity=0.564 Sum_probs=278.2
Q ss_pred CEEEEecC--CCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCCeeEEEEcCCCEEEEEe
Q 013365 20 PVLLISAG--ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWG 97 (444)
Q Consensus 20 ~i~~ia~G--~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG 97 (444)
+|.-|+.| ..|+++|+-+|+.|.||.|..||||+++...+..|+.|+.+...+|++.++|++|+++|+++ |+||.||
T Consensus 57 ~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdt-G~v~afG 135 (443)
T KOG1427|consen 57 NIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDT-GQVLAFG 135 (443)
T ss_pred eEEEEecccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecC-CcEEEec
Confidence 46666654 78999999999999999999999999988899999999999999999999999999999999 9999999
Q ss_pred CCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCC--------------
Q 013365 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTED-------------- 163 (444)
Q Consensus 98 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~-------------- 163 (444)
+|.+||||.++........++....+..|+.|+||.++++.|+..+.+..+|-..+||||+++...
T Consensus 136 eNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~ 215 (443)
T KOG1427|consen 136 ENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEA 215 (443)
T ss_pred ccccccccccccccccccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeec
Confidence 999999999987655444444445566899999999999999999999999999999999987542
Q ss_pred cccceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceEE
Q 013365 164 SLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTI 243 (444)
Q Consensus 164 ~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~ 243 (444)
+..|..+..+.+..|++++||.+|+++++++++||+||..-||.||.....+...|+.+..++..+..-.++.||+..++
T Consensus 216 ~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl 295 (443)
T KOG1427|consen 216 QPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSL 295 (443)
T ss_pred CCCccccccccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccce
Confidence 34567777888999999999999999999999999999999999999999999999999988877778889999999999
Q ss_pred EEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecCCCcccccCCCC--C
Q 013365 244 SVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNV--D 321 (444)
Q Consensus 244 ~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~g~~~--~ 321 (444)
.+.+-|.+|.||.+... -.+...|.++..+....+..|-|+..|.+ +..+..+..||...+|.++-+.+. .
T Consensus 296 ~v~e~G~Lf~~g~~k~~------ge~~mypkP~~dlsgwnl~~~~~~~~h~~-v~ad~s~i~wg~~~~g~~lggp~~Qks 368 (443)
T KOG1427|consen 296 NVAEGGQLFMWGKIKNN------GEDWMYPKPMMDLSGWNLRWMDSGSMHHF-VGADSSCISWGHAQYGELLGGPNGQKS 368 (443)
T ss_pred eecccceeEEeeccccC------cccccCCCchhhcCCccCCCcCccceeee-ecccccccccccccccccccCcccccc
Confidence 99999999999987532 24566789999999988999999988865 456678999999988887655433 3
Q ss_pred ccCceEeccCCC----cEEecCCeeEEEeCCC
Q 013365 322 HCSPVQVKFPLD----QISCGWRHTLAVTERQ 349 (444)
Q Consensus 322 ~~~p~~v~~~~~----~i~~G~~h~~~l~~~g 349 (444)
...|.+++.+.. +|++|..|+++|.++-
T Consensus 369 s~~Pk~v~~l~~i~v~~VamGysHs~vivd~t 400 (443)
T KOG1427|consen 369 SAAPKKVDMLEGIHVMGVAMGYSHSMVIVDRT 400 (443)
T ss_pred ccCccccchhcceeccceeeccceEEEEEccc
Confidence 356766654433 8999999999998753
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=8.6e-40 Score=291.39 Aligned_cols=281 Identities=28% Similarity=0.554 Sum_probs=236.4
Q ss_pred CEEEEEeCCCCCccCCCC---CCCceeeeeecccCCCCEEEEEeC--CceEEEEecCCeEEEEECCCCCccCCCCCCCcc
Q 013365 91 MQVYSWGWGDFGRLGHGN---SSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSL 165 (444)
Q Consensus 91 g~v~~wG~n~~gqlG~~~---~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 165 (444)
|++..+|.-...+.|.-+ ..++..|..+..+.+.+|+-|+.| ..|+++|+.+|++|.||+|..||||+++.....
T Consensus 20 g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e 99 (443)
T KOG1427|consen 20 GEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRE 99 (443)
T ss_pred ccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccchhhcc
Confidence 667777765555554322 236778999999999999999866 689999999999999999999999999999999
Q ss_pred cceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceEEEE
Q 013365 166 VPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISV 245 (444)
Q Consensus 166 ~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~l 245 (444)
.|+.|..|...+|++.+||++|+++||++|+||.||.|.+||||+++.........+.... ...|+.|+||..+++.|
T Consensus 100 ~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~--~~~v~~v~cga~ftv~l 177 (443)
T KOG1427|consen 100 RPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVV--SDEVTNVACGADFTVWL 177 (443)
T ss_pred CCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCcccc--CccceeeccccceEEEe
Confidence 9999999999999999999999999999999999999999999999874433222222222 56899999999999999
Q ss_pred eCCCCEEEEeCCCCCcccCCCC--------------CCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecCCC
Q 013365 246 SSSGRLYSYGWSKYGQLGHGDF--------------KDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKF 311 (444)
Q Consensus 246 t~~G~vy~~G~n~~gqLG~~~~--------------~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~ 311 (444)
+..+.+.++|.-.|||||++.. ..++.|..+..+....|++++||.+|+++++++++||.||.+.|
T Consensus 178 ~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGy 257 (443)
T KOG1427|consen 178 SSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGY 257 (443)
T ss_pred ecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEeccccc
Confidence 9999999999999999999852 22345677778888899999999999999999999999999999
Q ss_pred cccccCCCCCccCceEeccCCC------cEEecCCeeEEEeCCCCEEEEeCCCCCCCCCCCCCCCCCCeEeecc
Q 013365 312 GQVGVGDNVDHCSPVQVKFPLD------QISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPL 379 (444)
Q Consensus 312 gqlG~g~~~~~~~p~~v~~~~~------~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~l 379 (444)
|.||..+..+...|..+++... .+.||...++++.+-|.+|.||.+.. +|+.. ..|.++.-|
T Consensus 258 GRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~----~ge~~--mypkP~~dl 325 (443)
T KOG1427|consen 258 GRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN----NGEDW--MYPKPMMDL 325 (443)
T ss_pred cccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc----Ccccc--cCCCchhhc
Confidence 9999999999999998876543 89999999999999999999998753 33333 345545444
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.95 E-value=2.6e-27 Score=235.63 Aligned_cols=304 Identities=26% Similarity=0.398 Sum_probs=231.8
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCC--CCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCccCCCCC
Q 013365 32 VALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALD--GHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNS 109 (444)
Q Consensus 32 ~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~--~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~ 109 (444)
.+++.-..||+||.|....||++.......|.+|..|. +.-+.+|+.+..|++++++. |+||++|.+..|+||+++.
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~k-gqvY~cGhG~GGRlG~gde 214 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEK-GQVYVCGHGAGGRLGFGDE 214 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCC-CcEEEeccCCCCccCcCcc
Confidence 34566789999999999999999999999999998775 35578899999999999998 9999999999999999999
Q ss_pred CCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCC-Ccccceeeecc--cCC-cEEEEEeCC
Q 013365 110 SDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE-DSLVPQKLQAF--EGV-SIKMVAAGA 185 (444)
Q Consensus 110 ~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~-~~~~p~~v~~~--~~~-~i~~ia~G~ 185 (444)
...+.|..|+.+.+.+|.+|+....|+++||++|-||+||.|..+|||..+.. ....|.++... ++. .|+-|++|.
T Consensus 215 q~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~ 294 (1267)
T KOG0783|consen 215 QYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGK 294 (1267)
T ss_pred cccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999987655 33445555432 222 689999999
Q ss_pred CeEEEEeCCCCEEEeeCCCCCCcCCCCCCC-ccceeeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcccC
Q 013365 186 EHSVAVAEDGELYGWGWGRYGNLGLGDRND-RLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGH 264 (444)
Q Consensus 186 ~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~-~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~vy~~G~n~~gqLG~ 264 (444)
.|+++-|+. .||+||.|. ||||+.+... ...|+.+... ...|..++|...-++++++++.+|++-+- .|.-.
T Consensus 295 ~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~~---~~~v~~v~a~~~ATVc~~~~~~i~~~ady--~~~k~ 367 (1267)
T KOG0783|consen 295 SHSVAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAGL---LSPVIHVVATTRATVCLLQNNSIIAFADY--NQVKL 367 (1267)
T ss_pred ceeeeeecc-eEEEecccC-ceecCCCCCceeecchhhccc---ccceEEEEecCccEEEEecCCcEEEEecc--cceec
Confidence 999999965 599999875 9999887743 4456555333 35899999999999999999999998642 22211
Q ss_pred CCCCCceeeeeec----cccCCcEEEEecCCCceeEEeCCCcEEEeecCCCcccccCCCCCccCceEeccCCCcEEecCC
Q 013365 265 GDFKDHLVPCQLE----ALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWR 340 (444)
Q Consensus 265 ~~~~~~~~p~~v~----~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~g~~~~~~~p~~v~~~~~~i~~G~~ 340 (444)
..........+|. .+....+.+..+...-.++||+.|+||.|-.+..-. ..-..+|..+- ...+|+--.+
T Consensus 368 ~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~-----~~c~ftp~r~~-~isdIa~~~N 441 (1267)
T KOG0783|consen 368 PFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTR-----TSCKFTPLRIF-EISDIAWTAN 441 (1267)
T ss_pred CcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCce-----eeeecccceee-ehhhhhhccc
Confidence 1111111111111 011123556667777889999999999998654211 11123343332 2337777778
Q ss_pred eeEEEeCCC
Q 013365 341 HTLAVTERQ 349 (444)
Q Consensus 341 h~~~l~~~g 349 (444)
..+++++||
T Consensus 442 ~~~~~t~dG 450 (1267)
T KOG0783|consen 442 SLILCTRDG 450 (1267)
T ss_pred eEEEEecCc
Confidence 999999999
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.94 E-value=1.2e-26 Score=230.82 Aligned_cols=268 Identities=21% Similarity=0.369 Sum_probs=212.0
Q ss_pred EEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccC--CCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCC
Q 013365 85 AYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALH--SLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE 162 (444)
Q Consensus 85 ~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~ 162 (444)
+++.. .+||.||.|....||+++......|..|..+. +.-+.+|+.+..|+++|++.|+||++|...-|.||+++..
T Consensus 137 ~~d~p-ndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq 215 (1267)
T KOG0783|consen 137 VLDLP-NDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQ 215 (1267)
T ss_pred ccCCc-cceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCccc
Confidence 34444 89999999999999999999988999888764 4567889999999999999999999999999999999988
Q ss_pred CcccceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCC-CccceeeeeeeecCCC-eEEEEEecCc
Q 013365 163 DSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRN-DRLIPEKVATVDLQRE-KMVMVACGWR 240 (444)
Q Consensus 163 ~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~-~~~~p~~v~~~~~~~~-~i~~Ia~G~~ 240 (444)
....|..++.+.+.+|.+|+....|+++||++|.||+||.|.++|||+.+.. ....|.+|.....++. .|+.|++|..
T Consensus 216 ~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~ 295 (1267)
T KOG0783|consen 216 YNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKS 295 (1267)
T ss_pred ccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcccc
Confidence 8899999999999999999999999999999999999999999999987663 3455666655554444 7999999999
Q ss_pred eEEEEeCCCCEEEEeCCCCCcccCCCCCC-ceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecCCCcccccCCC
Q 013365 241 HTISVSSSGRLYSYGWSKYGQLGHGDFKD-HLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDN 319 (444)
Q Consensus 241 hs~~lt~~G~vy~~G~n~~gqLG~~~~~~-~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~g~~ 319 (444)
|+++-++ -.||+||.| .||||..+... ..+|..+. .....|..+.|...-++++++++.+|++-.-..--+ ..+
T Consensus 296 hsVawt~-~~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~-~~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~--~~n 370 (1267)
T KOG0783|consen 296 HSVAWTD-TDVYSWGLN-NGQLGISDNISVVTTPRRLA-GLLSPVIHVVATTRATVCLLQNNSIIAFADYNQVKL--PFN 370 (1267)
T ss_pred eeeeeec-ceEEEeccc-CceecCCCCCceeecchhhc-ccccceEEEEecCccEEEEecCCcEEEEecccceec--Ccc
Confidence 9999984 489999987 59999876644 44565553 233458899999999999999999999875332221 112
Q ss_pred CCccCceEecc--------CCCcEEecCCeeEEEeCCCCEEEEeCCC
Q 013365 320 VDHCSPVQVKF--------PLDQISCGWRHTLAVTERQNVFSWGRGT 358 (444)
Q Consensus 320 ~~~~~p~~v~~--------~~~~i~~G~~h~~~l~~~g~v~~wG~n~ 358 (444)
.+....+.|.. ...+..+...-.+++++-|.||+|=.+.
T Consensus 371 ~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~n 417 (1267)
T KOG0783|consen 371 VDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKN 417 (1267)
T ss_pred hhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCC
Confidence 22222222221 1114445556678999999999998653
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.91 E-value=8.5e-23 Score=210.68 Aligned_cols=283 Identities=23% Similarity=0.302 Sum_probs=194.7
Q ss_pred CCCCEEEEecCCCceEEEEc--CCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCCeeEEEEcCCCEEE
Q 013365 17 PFRPVLLISAGASHSVALLS--GNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVY 94 (444)
Q Consensus 17 ~~~~i~~ia~G~~~~~~l~~--~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~ 94 (444)
.+++|++|+.|-+..+++.- +|-++.-|+. +.....+++...+.++|+.+.....---++.++ |++|
T Consensus 523 l~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~----------k~~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSen-Gkif 591 (3738)
T KOG1428|consen 523 LPEPIVQISVGIDTIMFRSGAGHGWIASVDDK----------KRNGRLRRLVPSNRRKIVHVCASGHVYGYVSEN-GKIF 591 (3738)
T ss_pred CCCceEEEEeccchhheeeccCcceEEeccCc----------ccccchhhcCCCCcceeEEEeeeeEEEEEEccC-CeEE
Confidence 34899999999888888774 4444433321 222223333334446788776544444556666 9999
Q ss_pred EEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCc-cccee----
Q 013365 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDS-LVPQK---- 169 (444)
Q Consensus 95 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~-~~p~~---- 169 (444)
..|....- .......+..+.+..|.+++.|..|.++++.+|+||.||-|+.+|+|.-..... ..|..
T Consensus 592 M~G~~tm~--------~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~ 663 (3738)
T KOG1428|consen 592 MGGLHTMR--------VNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQ 663 (3738)
T ss_pred eecceeEE--------ecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccce
Confidence 99864321 011234566788889999999999999999999999999999999997543211 11111
Q ss_pred ---------eecccCCcEEEEEeCCCeEEEE------eCCCCEEEeeCCCCCCcCCC--------CC-------------
Q 013365 170 ---------LQAFEGVSIKMVAAGAEHSVAV------AEDGELYGWGWGRYGNLGLG--------DR------------- 213 (444)
Q Consensus 170 ---------v~~~~~~~i~~ia~G~~h~~~L------t~~G~vy~wG~n~~gqlG~~--------~~------------- 213 (444)
-..+.+...+...||.-...-+ .-.|.+..+|.+..+.+-.+ ..
T Consensus 664 e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~ 743 (3738)
T KOG1428|consen 664 EYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFS 743 (3738)
T ss_pred eecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheec
Confidence 1111222333333433221111 12456666666554433211 00
Q ss_pred ------CCccceeeeeeee-cCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEE
Q 013365 214 ------NDRLIPEKVATVD-LQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ 286 (444)
Q Consensus 214 ------~~~~~p~~v~~~~-~~~~~i~~Ia~G~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~ 286 (444)
.....|..+.... ..+.++.+|+||.+|++.|.++++||+||.|.+||||.++......|+.+..+.+..|++
T Consensus 744 staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQ 823 (3738)
T KOG1428|consen 744 STAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQ 823 (3738)
T ss_pred ccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEE
Confidence 1112333332221 224589999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCceeEEeCCCcEEEeecCCCcccccCC
Q 013365 287 ISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGD 318 (444)
Q Consensus 287 i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~g~ 318 (444)
|++|.+|++++..||.||.+|.-..|||+..-
T Consensus 824 VaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~ 855 (3738)
T KOG1428|consen 824 VAAGSNHTILRANDGSVFTFGAFGKGQLARPA 855 (3738)
T ss_pred EecCCCceEEEecCCcEEEeccccCccccCcc
Confidence 99999999999999999999999999998754
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.3e-21 Score=202.03 Aligned_cols=338 Identities=22% Similarity=0.317 Sum_probs=218.8
Q ss_pred CCCEEEEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCCeeEEEEcC-CCEEEEE
Q 013365 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSES-CMQVYSW 96 (444)
Q Consensus 18 ~~~i~~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~-~g~v~~w 96 (444)
.+.-+.+-.++...++-+.+|+||.-|... .+|.-..-..+ ..+... .+|++|+.|-+...|+.-. +|-++.-
T Consensus 478 ~~qtv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~nW--mEL~l~--~~IVq~SVG~D~~~~~~~A~~G~I~~v 551 (3738)
T KOG1428|consen 478 HPQTVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGNNW--MELCLP--EPIVQISVGIDTIMFRSGAGHGWIASV 551 (3738)
T ss_pred CchheecccchhhhhhhhcCccEEEecCcc--EEeEEccCCce--EEecCC--CceEEEEeccchhheeeccCcceEEec
Confidence 334456677888888888999999888643 23432222111 112111 4799999999988877654 1455544
Q ss_pred eCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCC
Q 013365 97 GWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGV 176 (444)
Q Consensus 97 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~ 176 (444)
+... ..|. -.........+|+++.+...---.++++|++|..|..... .....+.+..+.+.
T Consensus 552 ~D~k--~~~~--------~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~L~~~ 613 (3738)
T KOG1428|consen 552 DDKK--RNGR--------LRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNGLDNV 613 (3738)
T ss_pred cCcc--cccc--------hhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhccccc
Confidence 4221 1111 1111222334788886655555678999999999853320 11123456678888
Q ss_pred cEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCcc-ceeeeeeeec-----------CCCeEEEEEecCceEEE
Q 013365 177 SIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRL-IPEKVATVDL-----------QREKMVMVACGWRHTIS 244 (444)
Q Consensus 177 ~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~-~p~~v~~~~~-----------~~~~i~~Ia~G~~hs~~ 244 (444)
-|.+++.|..|.++++.+|+||.||.|+.+|+|.-...... .|..-...+. .+...+-..||.....-
T Consensus 614 ~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~G 693 (3738)
T KOG1428|consen 614 MISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARG 693 (3738)
T ss_pred eeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccc
Confidence 99999999999999999999999999999999976543222 1211000000 01112222233221110
Q ss_pred ------EeCCCCEEEEeCCCCCcccCC--------C------------CC-------Cceeeeeec---cccCCcEEEEe
Q 013365 245 ------VSSSGRLYSYGWSKYGQLGHG--------D------------FK-------DHLVPCQLE---ALRESFISQIS 288 (444)
Q Consensus 245 ------lt~~G~vy~~G~n~~gqLG~~--------~------------~~-------~~~~p~~v~---~~~~~~i~~i~ 288 (444)
-.-.|.+..+|.+..+.|--+ . .. ....|..+. ...+.++.+|+
T Consensus 694 vaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVS 773 (3738)
T KOG1428|consen 694 VACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVS 773 (3738)
T ss_pred cccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEe
Confidence 112455666665554433211 0 00 011233332 23356799999
Q ss_pred cCCCceeEEeCCCcEEEeecCCCcccccCCCCCccCceEeccCCC----cEEecCCeeEEEeCCCCEEEEeCCCCCCCCC
Q 013365 289 GGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLD----QISCGWRHTLAVTERQNVFSWGRGTNGQLGH 364 (444)
Q Consensus 289 ~G~~~~~~lt~~g~vy~wG~n~~gqlG~g~~~~~~~p~~v~~~~~----~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~ 364 (444)
||..|+++|.+|++||.+|+|.+||||.|+......|++|..+.. ++++|++|++++..||+||.+|.-..|||+.
T Consensus 774 CG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~R 853 (3738)
T KOG1428|consen 774 CGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLAR 853 (3738)
T ss_pred ccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccC
Confidence 999999999999999999999999999999999999999977654 9999999999999999999999999999997
Q ss_pred CCCCC---CCCCeEeecc
Q 013365 365 GESSD---RNSPKIIEPL 379 (444)
Q Consensus 365 g~~~~---~~~P~~i~~l 379 (444)
.--+. ...|.++..+
T Consensus 854 P~~e~~~WNA~Pe~v~~~ 871 (3738)
T KOG1428|consen 854 PAGEKAGWNAIPEKVSGF 871 (3738)
T ss_pred ccccccccccCCCcCCCC
Confidence 64321 3456666544
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.23 E-value=1.1e-11 Score=85.32 Aligned_cols=50 Identities=44% Similarity=0.696 Sum_probs=47.2
Q ss_pred CCCEEEEeCCCCCccc-CCCCCCceeeeeeccccCCcEEEEecCCCceeEE
Q 013365 248 SGRLYSYGWSKYGQLG-HGDFKDHLVPCQLEALRESFISQISGGWRHTMAV 297 (444)
Q Consensus 248 ~G~vy~~G~n~~gqLG-~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l 297 (444)
||+||+||.|.+|||| .........|++++.+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 7777889999999999999999999999999986
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.21 E-value=2.2e-11 Score=83.83 Aligned_cols=50 Identities=44% Similarity=0.783 Sum_probs=47.4
Q ss_pred CCeEEEEECCCCCccC-CCCCCCcccceeeecccCCcEEEEEeCCCeEEEE
Q 013365 142 EGEVQSWGRNQNGQLG-LGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAV 191 (444)
Q Consensus 142 ~G~vy~wG~n~~gqlG-~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~L 191 (444)
||+||+||.|.+|||| .........|+++..+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 7888888999999999999999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.12 E-value=9e-11 Score=70.46 Aligned_cols=30 Identities=40% Similarity=0.648 Sum_probs=26.1
Q ss_pred EEEEecCCCceEEEEcCCeEEEEeCCCCCC
Q 013365 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQ 50 (444)
Q Consensus 21 i~~ia~G~~~~~~l~~~g~v~~wG~n~~gq 50 (444)
|++|+||..|+++|++||+||+||+|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.10 E-value=1.1e-10 Score=70.11 Aligned_cols=30 Identities=40% Similarity=0.858 Sum_probs=26.1
Q ss_pred EEEEEeCCCeEEEEeCCCCEEEeeCCCCCC
Q 013365 178 IKMVAAGAEHSVAVAEDGELYGWGWGRYGN 207 (444)
Q Consensus 178 i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gq 207 (444)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999997
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.7e-12 Score=131.99 Aligned_cols=148 Identities=32% Similarity=0.596 Sum_probs=130.9
Q ss_pred ecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEeCCCCE
Q 013365 118 IKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGEL 197 (444)
Q Consensus 118 v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~v 197 (444)
+..+.-.++.+++||..|+++++..|++|.||.|.+||+|.+.......|..++.+.+.+...|++|..|++++..
T Consensus 8 ~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~---- 83 (850)
T KOG0941|consen 8 VLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS---- 83 (850)
T ss_pred HHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh----
Confidence 3344445799999999999999999999999999999999985554445999999999999999999999998875
Q ss_pred EEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeec
Q 013365 198 YGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLE 277 (444)
Q Consensus 198 y~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~ 277 (444)
|++++++.|.++.+|....||+|+........|..+.
T Consensus 84 -------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~ 120 (850)
T KOG0941|consen 84 -------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVL 120 (850)
T ss_pred -------------------------------------------chhhcchhccccccCCcccccccccccccccccHHHH
Confidence 8999999999999999999999997777788888888
Q ss_pred cccCCcEEEEecCCCceeEEe-CCCcEEEeecCCCc
Q 013365 278 ALRESFISQISGGWRHTMAVT-SDGKLYGWGWNKFG 312 (444)
Q Consensus 278 ~~~~~~i~~i~~G~~~~~~lt-~~g~vy~wG~n~~g 312 (444)
.+-...+.+|+||..|++++- .-|++|.+|.+..|
T Consensus 121 e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 121 ELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred HHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 887888999999999998875 56999999998877
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=7.2e-12 Score=127.50 Aligned_cols=173 Identities=27% Similarity=0.455 Sum_probs=135.4
Q ss_pred CCEEEEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCCeeEEEEc-------CCC
Q 013365 19 RPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSE-------SCM 91 (444)
Q Consensus 19 ~~i~~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~-------~~g 91 (444)
.+|++++||..|.+++...|.+++||.|.+||+|.+.......|.+++.+.+....+|++|.+|++++.. + +
T Consensus 14 k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e-~ 92 (850)
T KOG0941|consen 14 KHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDE-G 92 (850)
T ss_pred hhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcchh-c
Confidence 4789999999999999999999999999999999985543334999999999999999999999887766 7 9
Q ss_pred EEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEec-CCeEEEEECCCCC--ccCCCCCCCcccce
Q 013365 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTV-EGEVQSWGRNQNG--QLGLGTTEDSLVPQ 168 (444)
Q Consensus 92 ~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~-~G~vy~wG~n~~g--qlG~~~~~~~~~p~ 168 (444)
.++.+|....+|+|+....+...|..+..+-+..+.+|+|+..|+++.-. -|++|.+|.+..| ++- ....+.
T Consensus 93 ~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i~-----s~s~~~ 167 (850)
T KOG0941|consen 93 KVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVIV-----SLSGED 167 (850)
T ss_pred cccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCCceee-----ccchhh
Confidence 99999999999999977777777887777778899999999999877654 5899999988776 111 001110
Q ss_pred eeec---ccCCcEEEEEeCCCeEEEEeCCCCE
Q 013365 169 KLQA---FEGVSIKMVAAGAEHSVAVAEDGEL 197 (444)
Q Consensus 169 ~v~~---~~~~~i~~ia~G~~h~~~Lt~~G~v 197 (444)
.... .....+..+.+|.+.+..|...++-
T Consensus 168 ~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~~~ 199 (850)
T KOG0941|consen 168 LLRDHDSEKDHRCSLAFAGGDQTFSLSSKGEN 199 (850)
T ss_pred hcccccHHHHHHHHHHhcCCCceEEEEeeccc
Confidence 0110 1122355578888888888766543
No 15
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=95.91 E-value=0.089 Score=59.27 Aligned_cols=281 Identities=17% Similarity=0.230 Sum_probs=135.0
Q ss_pred CEEEEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeee--------------ccCC---C---CcEEEEEec
Q 013365 20 PVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQL--------------SALD---G---HEIVSVTCG 79 (444)
Q Consensus 20 ~i~~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v--------------~~~~---~---~~i~~i~~G 79 (444)
...+|.-..++.++.+++|+||. |.-.. .+..+..-...|... ..|- + ..++.=..|
T Consensus 490 ~A~~VgLs~drLFvADseGkLYs-a~l~~--~~~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~~G 566 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSEGKLYS-ADLPA--AQDNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDRQG 566 (1774)
T ss_pred hhhheeecCCeEEEEeCCCCEEe-ccccc--ccCCCcceEeccccccccccccccccceeeccccCCCCeeeEEEeccCC
Confidence 56667767778889999999994 32111 111111111112111 1110 0 113333456
Q ss_pred CCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCcee---eeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCcc
Q 013365 80 ADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFT---PLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQL 156 (444)
Q Consensus 80 ~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~---p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gql 156 (444)
..|+++|.++ +.=|.-|||-...|=..+...... |.+-. .+-.|..-.++|. +|+|+.|-....+--
T Consensus 567 Q~Hs~aLde~-~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~--------~ldl~r~G~v~L~-~G~i~~wD~ttq~W~ 636 (1774)
T PF11725_consen 567 QRHSHALDEQ-GSQLQPGWNLSDALVLDNTRGLPKPPAPAPHE--------ILDLGRAGLVGLQ-DGKIQYWDSTTQCWK 636 (1774)
T ss_pred ceeecccccc-CCccCCCCcccceeEeeccCCCCCCCCCChHH--------hhccccccceeec-cceEeeecCcchhhh
Confidence 6777777776 777777777655443333322221 12111 2234566677887 599999975443211
Q ss_pred CCCCCC-Ccc---cceeeecccCCcEEE---------EEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeee
Q 013365 157 GLGTTE-DSL---VPQKLQAFEGVSIKM---------VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVA 223 (444)
Q Consensus 157 G~~~~~-~~~---~p~~v~~~~~~~i~~---------ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 223 (444)
..+... +.. .-..-..|.+-+|+. |+-|.+|.++++.--.-+.. -..+.
T Consensus 637 ~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~------------------G~~l~ 698 (1774)
T PF11725_consen 637 DAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVEL------------------GDALE 698 (1774)
T ss_pred hccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCC------------------Ccccc
Confidence 111100 000 000000011112222 33333333333322211111 12233
Q ss_pred eeecCCCeEEEEEe-cCceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCCCc-eeEEeCCC
Q 013365 224 TVDLQREKMVMVAC-GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRH-TMAVTSDG 301 (444)
Q Consensus 224 ~~~~~~~~i~~Ia~-G~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~-~~~lt~~g 301 (444)
.++ +..|..++. +.++.++|++.|++-..= .-| ...|.....+.+ .|++|+.=..| -++++.+|
T Consensus 699 Gl~--~~~i~a~Avv~~~~fvald~qg~lt~h~--k~g---------~p~~l~~~gl~G-~ik~l~lD~~~nL~Alt~~G 764 (1774)
T PF11725_consen 699 GLE--DRVITAFAVVNDNKFVALDDQGDLTAHQ--KPG---------RPVPLSRPGLSG-EIKDLALDEKQNLYALTSTG 764 (1774)
T ss_pred CCC--cCcceeEEEEcCCceEEeccCCcccccc--CCC---------CCccCCCCCCCc-chhheeeccccceeEecCCC
Confidence 444 456666554 678999999999987642 111 122222234433 48889988764 57789999
Q ss_pred cEEE-----eecCCCcccccCCCCCccCceEec--cCCCcEEecCCeeEEEeCCC
Q 013365 302 KLYG-----WGWNKFGQVGVGDNVDHCSPVQVK--FPLDQISCGWRHTLAVTERQ 349 (444)
Q Consensus 302 ~vy~-----wG~n~~gqlG~g~~~~~~~p~~v~--~~~~~i~~G~~h~~~l~~~g 349 (444)
+||. |=.+..+-.- ...+.|+.++ .+...+....+|.+.+.-++
T Consensus 765 ~Lf~~~k~~WQ~~~~~~~~----~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 765 ELFRLPKEAWQGNAEGDQM----AAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred ceeecCHHHhhCcccCCcc----ccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 9997 4444333111 1222333322 22336777777777666443
No 16
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=93.45 E-value=0.29 Score=55.36 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=72.3
Q ss_pred eeecccCCcEEEEE-eCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceE-EEEe
Q 013365 169 KLQAFEGVSIKMVA-AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHT-ISVS 246 (444)
Q Consensus 169 ~v~~~~~~~i~~ia-~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs-~~lt 246 (444)
.+..+++..|..++ .+.++.++|++.|++-..= .- -.|..+....+ .-.|++|++-..|. +|++
T Consensus 696 ~l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~--k~-----------g~p~~l~~~gl-~G~ik~l~lD~~~nL~Alt 761 (1774)
T PF11725_consen 696 ALEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ--KP-----------GRPVPLSRPGL-SGEIKDLALDEKQNLYALT 761 (1774)
T ss_pred cccCCCcCcceeEEEEcCCceEEeccCCcccccc--CC-----------CCCccCCCCCC-CcchhheeeccccceeEec
Confidence 35556666677665 4889999999999986432 11 11444332222 24799999988865 5889
Q ss_pred CCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCCCceeEEeCCC
Q 013365 247 SSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDG 301 (444)
Q Consensus 247 ~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g 301 (444)
.+|++|..=.-.....-.++ ......+++..+.+.+|..+....+|.+.+.-++
T Consensus 762 ~~G~Lf~~~k~~WQ~~~~~~-~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 762 STGELFRLPKEAWQGNAEGD-QMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CCCceeecCHHHhhCcccCC-ccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 99999964321111111110 1112344555556677999999988888876544
No 17
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.97 E-value=11 Score=35.24 Aligned_cols=234 Identities=19% Similarity=0.205 Sum_probs=106.8
Q ss_pred cCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecC---CeeEEEEcCCCEEEEEeCC-CC
Q 013365 26 AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA---DHTTAYSESCMQVYSWGWG-DF 101 (444)
Q Consensus 26 ~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~---~~~~~l~~~~g~v~~wG~n-~~ 101 (444)
.+.-|.++...||.|| ++..-.+.+|+-+... -+++.+..|. -|.+.+-.| |..|.+-.. ..
T Consensus 61 G~ap~dvapapdG~VW-ft~qg~gaiGhLdP~t------------Gev~~ypLg~Ga~Phgiv~gpd-g~~Witd~~~aI 126 (353)
T COG4257 61 GSAPFDVAPAPDGAVW-FTAQGTGAIGHLDPAT------------GEVETYPLGSGASPHGIVVGPD-GSAWITDTGLAI 126 (353)
T ss_pred CCCccccccCCCCceE-EecCccccceecCCCC------------CceEEEecCCCCCCceEEECCC-CCeeEecCccee
Confidence 3566889999999999 5444445555422211 1122222222 244555555 666655332 22
Q ss_pred CccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCC-CCccCCCCCCCcccceeeecccCCcEEE
Q 013365 102 GRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQ-NGQLGLGTTEDSLVPQKLQAFEGVSIKM 180 (444)
Q Consensus 102 gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~-~gqlG~~~~~~~~~p~~v~~~~~~~i~~ 180 (444)
++++..+-....-|.+ .+.+-+.-.+.+++.+|+||.-|.+- +|.|--.....+..|..
T Consensus 127 ~R~dpkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------- 186 (353)
T COG4257 127 GRLDPKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------- 186 (353)
T ss_pred EEecCcccceEEeecc---------cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC-----------
Confidence 2332221111112222 22233445678899999999998632 23221111111111111
Q ss_pred EEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCC
Q 013365 181 VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYG 260 (444)
Q Consensus 181 ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~vy~~G~n~~g 260 (444)
.-+.-.-++.|-||+||.--.-.. .++.-+... ..+..+...+. ...| .-.+..+..|++|.-=. ..+
T Consensus 187 -qG~gpyGi~atpdGsvwyaslagn-aiaridp~~-~~aev~p~P~~-------~~~g-sRriwsdpig~~wittw-g~g 254 (353)
T COG4257 187 -QGGGPYGICATPDGSVWYASLAGN-AIARIDPFA-GHAEVVPQPNA-------LKAG-SRRIWSDPIGRAWITTW-GTG 254 (353)
T ss_pred -CCCCCcceEECCCCcEEEEecccc-ceEEccccc-CCcceecCCCc-------cccc-ccccccCccCcEEEecc-CCc
Confidence 123455688999999997632110 111111111 12222222211 0111 12334556677765311 123
Q ss_pred cccCCCCC-CceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEE--eecCCCccc
Q 013365 261 QLGHGDFK-DHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYG--WGWNKFGQV 314 (444)
Q Consensus 261 qLG~~~~~-~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~--wG~n~~gql 314 (444)
+|..-+-. ..-.--+++..+. .-.++.+++.|+||. |+.|.-+++
T Consensus 255 ~l~rfdPs~~sW~eypLPgs~a---------rpys~rVD~~grVW~sea~agai~rf 302 (353)
T COG4257 255 SLHRFDPSVTSWIEYPLPGSKA---------RPYSMRVDRHGRVWLSEADAGAIGRF 302 (353)
T ss_pred eeeEeCcccccceeeeCCCCCC---------CcceeeeccCCcEEeeccccCceeec
Confidence 33322111 1112222332222 235677899999998 777776665
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=91.66 E-value=11 Score=34.62 Aligned_cols=103 Identities=16% Similarity=0.199 Sum_probs=54.8
Q ss_pred cCceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCCC--ceeEEeCCCcEEEeecCCCcccc
Q 013365 238 GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR--HTMAVTSDGKLYGWGWNKFGQVG 315 (444)
Q Consensus 238 G~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--~~~~lt~~g~vy~wG~n~~gqlG 315 (444)
...+-+.-+.+|+|++|--.. .......+|... ..|.+++...+ ..++.++.|++|+|-.-.
T Consensus 135 nQteLis~dqsg~irvWDl~~------~~c~~~liPe~~-----~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~----- 198 (311)
T KOG0315|consen 135 NQTELISGDQSGNIRVWDLGE------NSCTHELIPEDD-----TSIQSLTVMPDGSMLAAANNKGNCYVWRLLN----- 198 (311)
T ss_pred CcceEEeecCCCcEEEEEccC------CccccccCCCCC-----cceeeEEEcCCCcEEEEecCCccEEEEEccC-----
Confidence 344566678899999996322 222233344332 33666665544 445678899999997533
Q ss_pred cCCCCCccCceE-eccCCC-----cEEecCCeeEEEeCCCCEEEEeCC
Q 013365 316 VGDNVDHCSPVQ-VKFPLD-----QISCGWRHTLAVTERQNVFSWGRG 357 (444)
Q Consensus 316 ~g~~~~~~~p~~-v~~~~~-----~i~~G~~h~~~l~~~g~v~~wG~n 357 (444)
........|+. ++.-.. -++-...|.+...+|..|+.|-..
T Consensus 199 -~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 199 -HQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred -CCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 11112222221 111111 233345566666667778887643
No 19
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=91.39 E-value=3.2 Score=42.20 Aligned_cols=70 Identities=24% Similarity=0.291 Sum_probs=51.0
Q ss_pred CEEEEEeCC-ceEEEEecCCeEEE-EECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEe
Q 013365 125 RVKQIACGD-SHCLAVTVEGEVQS-WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGW 200 (444)
Q Consensus 125 ~i~~Ia~G~-~h~~~lt~~G~vy~-wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~w 200 (444)
.+.+|++|. ....+++.+|.||. .|.....+.|..=. +...|.... .++.|+.|....-+||.+|++|.-
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk-dI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK-DIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh-hccCccccc-----ceEEEEeccceEEEEecCCcEEEE
Confidence 689999998 77889999999864 56555555553322 222333322 289999999999999999999863
No 20
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=87.25 E-value=31 Score=35.42 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=48.3
Q ss_pred cEEEEEecC-CeeEEEEcCCCEEEE-EeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEE
Q 013365 72 EIVSVTCGA-DHTTAYSESCMQVYS-WGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSW 148 (444)
Q Consensus 72 ~i~~i~~G~-~~~~~l~~~~g~v~~-wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~w 148 (444)
.+.+|+.|. .-..+++++ |.||. -|-....+.|..-. +..+|. ..+ .++.|+.|....-+||.+|++|.=
T Consensus 228 ~L~qISagPtg~VwAvt~n-G~vf~R~GVsRqNp~GdsWk-dI~tP~--~a~---~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTEN-GAVFYREGVSRQNPEGDSWK-DIVTPR--QAL---EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccceEeecCcceEEEEeeC-CcEEEEecccccCCCCchhh-hccCcc--ccc---ceEEEEeccceEEEEecCCcEEEE
Confidence 588999998 677889999 77654 45444444443211 222222 222 389999999999999999999864
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=85.82 E-value=53 Score=35.01 Aligned_cols=226 Identities=17% Similarity=0.217 Sum_probs=113.5
Q ss_pred EEEEcCCCEEEEEeCCCCCccCCCCCC-CceeeeeecccCCCCEEEEEeCCceEEE--EecCCeEEEEECCCCCccCCCC
Q 013365 84 TAYSESCMQVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHSLRVKQIACGDSHCLA--VTVEGEVQSWGRNQNGQLGLGT 160 (444)
Q Consensus 84 ~~l~~~~g~v~~wG~n~~gqlG~~~~~-~~~~p~~v~~~~~~~i~~Ia~G~~h~~~--lt~~G~vy~wG~n~~gqlG~~~ 160 (444)
+++... |+-..+|...-|||..=+-. +.+....--. -.+|..++-..+-.++ =.+||+|-.|-..+. -|
T Consensus 313 ~~~N~t-GDWiA~g~~klgQLlVweWqsEsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC---- 384 (893)
T KOG0291|consen 313 VSFNST-GDWIAFGCSKLGQLLVWEWQSESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FC---- 384 (893)
T ss_pred EEeccc-CCEEEEcCCccceEEEEEeeccceeeecccc--ccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eE----
Confidence 444444 77777777777776543221 1111111111 1256666666553333 347888888854331 11
Q ss_pred CCCcccceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCc
Q 013365 161 TEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR 240 (444)
Q Consensus 161 ~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~ 240 (444)
.-+.-+.-.+...++...-.+..+...-||+|-+|-..+|-.+ .....|.++. .
T Consensus 385 -----~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf-----RTft~P~p~Q----------------f 438 (893)
T KOG0291|consen 385 -----FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF-----RTFTSPEPIQ----------------F 438 (893)
T ss_pred -----EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee-----eeecCCCcee----------------e
Confidence 0111112234456777777788888888999999987665322 2223333332 1
Q ss_pred eEEEEeCCCCEEEEeCC----------CCCcccCCCCCCceeeeeeccccC--CcEEEEecCCCceeEEe--CCCcEEEe
Q 013365 241 HTISVSSSGRLYSYGWS----------KYGQLGHGDFKDHLVPCQLEALRE--SFISQISGGWRHTMAVT--SDGKLYGW 306 (444)
Q Consensus 241 hs~~lt~~G~vy~~G~n----------~~gqLG~~~~~~~~~p~~v~~~~~--~~i~~i~~G~~~~~~lt--~~g~vy~w 306 (444)
.+++++..|.|.+-|.- ..||| +..+.+ .+|..++....-+.+.+ =|..|-.|
T Consensus 439 scvavD~sGelV~AG~~d~F~IfvWS~qTGql-------------lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 439 SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL-------------LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred eEEEEcCCCCEEEeeccceEEEEEEEeecCee-------------eehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence 13455555655555531 12222 111111 12333332222222211 23344444
Q ss_pred ecCCCcccccCCCCCccCceEeccCCCcEEec--CCeeEEEeCCCCEEEEeCCCCCCCCC
Q 013365 307 GWNKFGQVGVGDNVDHCSPVQVKFPLDQISCG--WRHTLAVTERQNVFSWGRGTNGQLGH 364 (444)
Q Consensus 307 G~n~~gqlG~g~~~~~~~p~~v~~~~~~i~~G--~~h~~~l~~~g~v~~wG~n~~gqLG~ 364 (444)
--- .+ .....|.++......++.- ..-.++.|-||++-.|-.++..|+|.
T Consensus 506 ~if--~s------~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~ 557 (893)
T KOG0291|consen 506 DIF--SS------SGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGS 557 (893)
T ss_pred Eee--cc------CceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecc
Confidence 321 11 1123445554444445543 56788889999999999999999964
No 22
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=85.46 E-value=0.088 Score=57.08 Aligned_cols=133 Identities=20% Similarity=0.237 Sum_probs=88.1
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCC--CCCCccceeeeeeeecCCCeEEEEEecCceEEEEeCCCCEE
Q 013365 175 GVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLG--DRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLY 252 (444)
Q Consensus 175 ~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~--~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~vy 252 (444)
..+++.|.+-.+..++|..+|++|.|-+...--|-.. .......|.. ..+-+.+++|+.+++..--.-++|++|+|.
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~-a~iG~hge~ii~lSanniR~si~T~nghla 451 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDA-AFIGLHGEKIILLSANNIRASIATENGHLA 451 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCcc-ceecccCCeeEEeecCceeeeeeecCCchh
Confidence 4467888888888899999999999998876544431 1233333432 234445889999999998889999999999
Q ss_pred EEeCCCCCcccCCCC--CCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecCCCcc
Q 013365 253 SYGWSKYGQLGHGDF--KDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQ 313 (444)
Q Consensus 253 ~~G~n~~gqLG~~~~--~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gq 313 (444)
.|=+- .|.+-. -.+..-+++. .....+++..|-..|.++...++-+|-||--.+.+
T Consensus 452 sWlDE----cgagV~fkLa~ea~Tkie-ed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 452 SWLDE----CGAGVAFKLAHEAQTKIE-EDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred hHHhh----hhhhhhhhhhhhhhhhhh-hhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 98542 111110 0111112221 22334556667788999999999999999655544
No 23
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=83.82 E-value=0.31 Score=53.13 Aligned_cols=126 Identities=19% Similarity=0.244 Sum_probs=81.9
Q ss_pred CCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcccCCCC--CCceee-eeeccccCCcEEEEecCCCceeEEeCCCcEE
Q 013365 228 QREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDF--KDHLVP-CQLEALRESFISQISGGWRHTMAVTSDGKLY 304 (444)
Q Consensus 228 ~~~~i~~Ia~G~~hs~~lt~~G~vy~~G~n~~gqLG~~~~--~~~~~p-~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy 304 (444)
...+++.|.+-++..++|..+|++|.|-+...--|-..-. .....| .....+.+.+|+.+++..-..-++|++|+|-
T Consensus 372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghla 451 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLA 451 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchh
Confidence 3568888888888889999999999999876544433211 111112 1223456678999999999999999999999
Q ss_pred EeecCCCcccccCCC--CCccCceEeccCCC---cEEecCCeeEEEeCCCCEEEEeCC
Q 013365 305 GWGWNKFGQVGVGDN--VDHCSPVQVKFPLD---QISCGWRHTLAVTERQNVFSWGRG 357 (444)
Q Consensus 305 ~wG~n~~gqlG~g~~--~~~~~p~~v~~~~~---~i~~G~~h~~~l~~~g~v~~wG~n 357 (444)
.|=.- +|.+-. .....-+++..... +.-|-..|.++..+|+.+|+||--
T Consensus 452 sWlDE----cgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiV 505 (3015)
T KOG0943|consen 452 SWLDE----CGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIV 505 (3015)
T ss_pred hHHhh----hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeee
Confidence 99431 222111 11111222221111 445667899999999999999943
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=83.15 E-value=69 Score=34.18 Aligned_cols=251 Identities=18% Similarity=0.133 Sum_probs=123.1
Q ss_pred CCEEEEecCCC--ceEEEEcCCeEEEEeCCCCCCCCCCCCCC-CcCCeeeccCCCCcEEEEEecCC--eeEEEEcCCCEE
Q 013365 19 RPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAED-RLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQV 93 (444)
Q Consensus 19 ~~i~~ia~G~~--~~~~l~~~g~v~~wG~n~~gqlG~~~~~~-~~~P~~v~~~~~~~i~~i~~G~~--~~~~l~~~~g~v 93 (444)
.-|-+++.+.. .++.+...|.-.++|+..-|||..=+... ...-.+-..++ ++..++-..+ ..+.=.+| |+|
T Consensus 298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~--~i~~l~YSpDgq~iaTG~eD-gKV 374 (893)
T KOG0291|consen 298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD--RITSLAYSPDGQLIATGAED-GKV 374 (893)
T ss_pred eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc--ceeeEEECCCCcEEEeccCC-CcE
Confidence 34445555533 45666677988899998888887633211 11111111122 3555555555 33333455 888
Q ss_pred EEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecc
Q 013365 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAF 173 (444)
Q Consensus 94 ~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~ 173 (444)
-.|-....-+ .-+--+.-.+...++...-.+..+-.+-||.|-+|--..+-.. .....|.+++
T Consensus 375 KvWn~~SgfC----------~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf-----RTft~P~p~Q-- 437 (893)
T KOG0291|consen 375 KVWNTQSGFC----------FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF-----RTFTSPEPIQ-- 437 (893)
T ss_pred EEEeccCceE----------EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee-----eeecCCCcee--
Confidence 8886543211 1111122234456666666777777888999999975443211 0111122221
Q ss_pred cCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCc---eEEEEeCCCC
Q 013365 174 EGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR---HTISVSSSGR 250 (444)
Q Consensus 174 ~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~---hs~~lt~~G~ 250 (444)
..+++++..|+|.+.|.-+. ..|.....+.-+..+|-.|.. +.+...-.|.
T Consensus 438 ------------fscvavD~sGelV~AG~~d~--------------F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~ 491 (893)
T KOG0291|consen 438 ------------FSCVAVDPSGELVCAGAQDS--------------FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS 491 (893)
T ss_pred ------------eeEEEEcCCCCEEEeeccce--------------EEEEEEEeecCeeeehhcCCCCcceeeEEccccC
Confidence 12456666677777663221 011111122233444444332 3334444444
Q ss_pred EEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecC--CCceeEEeCCCcEEEeecCCCcccccC
Q 013365 251 LYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQVGVG 317 (444)
Q Consensus 251 vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~~gqlG~g 317 (444)
+.+-|.=++-.-=..-.....+-..++...+ +..++.- ..-.++.|-+|++-.|-.+...|+|.-
T Consensus 492 ~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd--vl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 492 LLASGSWDKTVRIWDIFSSSGTVETLEIRSD--VLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred eEEeccccceEEEEEeeccCceeeeEeeccc--eeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 4433321100000000000001112222223 4445443 667788899999999999999998653
No 25
>PHA03098 kelch-like protein; Provisional
Probab=81.68 E-value=70 Score=33.22 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=11.2
Q ss_pred ceEEEEecCCeEEEEEC
Q 013365 134 SHCLAVTVEGEVQSWGR 150 (444)
Q Consensus 134 ~h~~~lt~~G~vy~wG~ 150 (444)
.|+++ .-+|++|.+|-
T Consensus 382 ~~~~~-~~~~~iYv~GG 397 (534)
T PHA03098 382 NPCVV-NVNNLIYVIGG 397 (534)
T ss_pred cceEE-EECCEEEEECC
Confidence 44444 45789999985
No 26
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.24 E-value=6.3 Score=35.80 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=29.5
Q ss_pred ccCCCCCCCEEEEecCCCceEEEEcCCeEEEEeCC
Q 013365 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRG 46 (444)
Q Consensus 12 ~~~~~~~~~i~~ia~G~~~~~~l~~~g~v~~wG~n 46 (444)
.+++..+.+++.+.|-+.+.++||.+|.+|+|=-.
T Consensus 6 ~P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 6 LPPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred cCcEecCCceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 45566677888899999999999999999999643
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=79.22 E-value=53 Score=30.29 Aligned_cols=165 Identities=15% Similarity=0.254 Sum_probs=80.9
Q ss_pred eeeeecccCC--CCEEEEEe--CCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCCCeEE
Q 013365 114 TPLPIKALHS--LRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSV 189 (444)
Q Consensus 114 ~p~~v~~~~~--~~i~~Ia~--G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~ 189 (444)
.|.|+..+.+ .+|..|.. -..-.+-=.+||.+-.|---. +. .+.........+-+-+.-...+-+
T Consensus 72 np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~---~~--------~qR~~~~~spVn~vvlhpnQteLi 140 (311)
T KOG0315|consen 72 NPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS---LS--------CQRNYQHNSPVNTVVLHPNQTELI 140 (311)
T ss_pred CCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC---cc--------cchhccCCCCcceEEecCCcceEE
Confidence 3445544432 35666653 333344446788888886322 11 111111111112233444556667
Q ss_pred EEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCc--eEEEEeCCCCEEEEeCCCCCcccCCCC
Q 013365 190 AVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR--HTISVSSSGRLYSYGWSKYGQLGHGDF 267 (444)
Q Consensus 190 ~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~--hs~~lt~~G~vy~~G~n~~gqLG~~~~ 267 (444)
.-+.+|.|++|-... ..-.....|.. ...|.+++...+ ..++.++.|+.|+|-.-. ...
T Consensus 141 s~dqsg~irvWDl~~------~~c~~~liPe~-------~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~------~~~ 201 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGE------NSCTHELIPED-------DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN------HQT 201 (311)
T ss_pred eecCCCcEEEEEccC------CccccccCCCC-------CcceeeEEEcCCCcEEEEecCCccEEEEEccC------CCc
Confidence 778899999996322 11122233332 234555555544 456788999999996422 122
Q ss_pred CCceeeeeeccccCCcEEE--EecCCCceeEEeCCCcEEEeec
Q 013365 268 KDHLVPCQLEALRESFISQ--ISGGWRHTMAVTSDGKLYGWGW 308 (444)
Q Consensus 268 ~~~~~p~~v~~~~~~~i~~--i~~G~~~~~~lt~~g~vy~wG~ 308 (444)
.....|..--......|.+ .+-...|.+.-..|-.+++|-.
T Consensus 202 ~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 202 ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred cccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 2233332211111222333 2334444455556777888854
No 28
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=76.92 E-value=90 Score=31.74 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=35.0
Q ss_pred CcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEE
Q 013365 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQS 147 (444)
Q Consensus 71 ~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~ 147 (444)
+.|..+..+.+--++--+++|.++.|+...+- .. +-+..--|.-+++++..+|.+.+
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~----------~~----------k~~~aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNR----------IS----------KQVHAHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCce----------EE----------eEeeecCCceEEEEEecCccEee
Confidence 45677777777766666666999999873220 00 11112335556777777777776
No 29
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.14 E-value=1.5e+02 Score=33.91 Aligned_cols=208 Identities=19% Similarity=0.210 Sum_probs=98.0
Q ss_pred EEEEcCCCEEEEEeCCCCCccCCCCCCC--ceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCC-ccCCCC
Q 013365 84 TAYSESCMQVYSWGWGDFGRLGHGNSSD--LFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNG-QLGLGT 160 (444)
Q Consensus 84 ~~l~~~~g~v~~wG~n~~gqlG~~~~~~--~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~g-qlG~~~ 160 (444)
+.++-| .+||.|-.++.+++-.-+... ...-..++.-.+.-+-.| .|.++|...=+|+..|-...- +.+...
T Consensus 93 aWiTiD-n~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 93 AWITID-NNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred eEEEeC-CeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEeccccCcccc
Confidence 567777 999999988766653322211 111111111122222222 589999999999999843211 111111
Q ss_pred CCCcccceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCC-------------CCC-cCC----CCCCCccceeee
Q 013365 161 TEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGR-------------YGN-LGL----GDRNDRLIPEKV 222 (444)
Q Consensus 161 ~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~-------------~gq-lG~----~~~~~~~~p~~v 222 (444)
-... -.+ ...+..|..|.+ +++|+||.-|.+. +++ +-. ...-....|..+
T Consensus 168 f~~~---~~i-~~dg~~V~~I~~--------t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~ 235 (1311)
T KOG1900|consen 168 FNTS---FKI-SVDGVSVNCITY--------TENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL 235 (1311)
T ss_pred cccc---eee-ecCCceEEEEEe--------ccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence 0011 011 122344554443 4555555554332 111 000 000122345422
Q ss_pred eeeecCCCeEEEEEecCceEE--EEeCCCCEEEEeCCCCCcccCCCCCC---------ceeeeeeccccCCcEEEEe---
Q 013365 223 ATVDLQREKMVMVACGWRHTI--SVSSSGRLYSYGWSKYGQLGHGDFKD---------HLVPCQLEALRESFISQIS--- 288 (444)
Q Consensus 223 ~~~~~~~~~i~~Ia~G~~hs~--~lt~~G~vy~~G~n~~gqLG~~~~~~---------~~~p~~v~~~~~~~i~~i~--- 288 (444)
.......+.|.+|+.+....+ .+++.|.|-+|=-...|+-+.-.... ...-..+....-..|++|+
T Consensus 236 ~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~~l~ 315 (1311)
T KOG1900|consen 236 SVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSISPLS 315 (1311)
T ss_pred cCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEecccC
Confidence 222123568999999887654 66788887666554444433221000 0000011111112355554
Q ss_pred ---cCCCceeEEeCCC-cEEEeec
Q 013365 289 ---GGWRHTMAVTSDG-KLYGWGW 308 (444)
Q Consensus 289 ---~G~~~~~~lt~~g-~vy~wG~ 308 (444)
.-.-|.+++|..| ++|.-|.
T Consensus 316 ~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 316 ASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred cccccceeEEEEecCCeEEEEecc
Confidence 3456888899888 4676553
No 30
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=75.39 E-value=94 Score=31.19 Aligned_cols=70 Identities=13% Similarity=0.174 Sum_probs=42.2
Q ss_pred CCEEEEEe-CCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeee--cccCCcEEEEEeCCCeEEEEeCCCCEEEe
Q 013365 124 LRVKQIAC-GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ--AFEGVSIKMVAAGAEHSVAVAEDGELYGW 200 (444)
Q Consensus 124 ~~i~~Ia~-G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~--~~~~~~i~~ia~G~~h~~~Lt~~G~vy~w 200 (444)
.+|+.+.- -..+.++|.++|.++.+- -.|.. ....+..+. .....++-.+..+..-.++||.++++|.-
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v 152 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVV 152 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEE
Confidence 47777765 356788999999988863 22322 111122221 11122334445666778999999999987
Q ss_pred e
Q 013365 201 G 201 (444)
Q Consensus 201 G 201 (444)
=
T Consensus 153 ~ 153 (410)
T PF04841_consen 153 N 153 (410)
T ss_pred e
Confidence 4
No 31
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=74.72 E-value=19 Score=32.65 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=25.7
Q ss_pred CCCEEEEEeCCceEEEEecCCeEEEEECCC
Q 013365 123 SLRVKQIACGDSHCLAVTVEGEVQSWGRNQ 152 (444)
Q Consensus 123 ~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~ 152 (444)
+.++..+.|...+.++||++|.+|+|--..
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 347888999999999999999999996443
No 32
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.11 E-value=2e+02 Score=33.03 Aligned_cols=215 Identities=15% Similarity=0.099 Sum_probs=99.5
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCCCCCC--CcCCeeeccCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCC-ccCCCC
Q 013365 32 VALLSGNIVCSWGRGEDGQLGHGDAED--RLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFG-RLGHGN 108 (444)
Q Consensus 32 ~~l~~~g~v~~wG~n~~gqlG~~~~~~--~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~g-qlG~~~ 108 (444)
+=++.|.++|.|=.++.+++-.-+... ...=..+..-.+.-+-.| .|.++|.+. -+|+..|--..- +.+...
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~-~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATP-VEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEeccc-ceEEEEEEEeccccCcccc
Confidence 458899999999999877665322211 111111111122222222 478888888 899988843221 111111
Q ss_pred CCCceeeeeecccCCCCEEEEEeCCceEEEEe-cCCeEEEEE----CCCCCccCC-----CCCCCcccceeeecc--cCC
Q 013365 109 SSDLFTPLPIKALHSLRVKQIACGDSHCLAVT-VEGEVQSWG----RNQNGQLGL-----GTTEDSLVPQKLQAF--EGV 176 (444)
Q Consensus 109 ~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt-~~G~vy~wG----~n~~gqlG~-----~~~~~~~~p~~v~~~--~~~ 176 (444)
..+. -.-...+..|..|.+-++-=++++ +||.||-.= .+-+++.-. ...-....|..+... ...
T Consensus 168 f~~~----~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~d 243 (1311)
T KOG1900|consen 168 FNTS----FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKD 243 (1311)
T ss_pred cccc----eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCC
Confidence 1110 001122444555543322222222 444444331 111111000 001123345533322 255
Q ss_pred cEEEEEeCCCeE--EEEeCCCCEEEeeCCCCCCcCCCCCCCc-------c-ceeeeeeeecCCCeEEEEEe------cCc
Q 013365 177 SIKMVAAGAEHS--VAVAEDGELYGWGWGRYGNLGLGDRNDR-------L-IPEKVATVDLQREKMVMVAC------GWR 240 (444)
Q Consensus 177 ~i~~ia~G~~h~--~~Lt~~G~vy~wG~n~~gqlG~~~~~~~-------~-~p~~v~~~~~~~~~i~~Ia~------G~~ 240 (444)
+|++|+...... +.+++.|.|=+|-....|+-+.-.-... . .-.. +..+.....|++|+. -+-
T Consensus 244 pI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~-~~~~s~f~~IvsI~~l~~~es~~l 322 (1311)
T KOG1900|consen 244 PIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKN-PLDDSVFFSIVSISPLSASESNDL 322 (1311)
T ss_pred cceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccc-cCCCcccceeEEecccCcccccce
Confidence 899999987665 4667888877776555444332110000 0 0000 011111234555542 345
Q ss_pred eEEEEeCCC-CEEEEeC
Q 013365 241 HTISVSSSG-RLYSYGW 256 (444)
Q Consensus 241 hs~~lt~~G-~vy~~G~ 256 (444)
|.+++|..| ++|.-|.
T Consensus 323 ~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 323 HLVAITSTGVRLYFSTS 339 (1311)
T ss_pred eEEEEecCCeEEEEecc
Confidence 889999998 5777664
No 33
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=69.63 E-value=1.2e+02 Score=29.79 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=30.6
Q ss_pred CceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccC-CcEEEEEeCCCeEEEEeCCCCEEEe
Q 013365 133 DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEG-VSIKMVAAGAEHSVAVAEDGELYGW 200 (444)
Q Consensus 133 ~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~-~~i~~ia~G~~h~~~Lt~~G~vy~w 200 (444)
..+.++.+.+|.||++-..+ |++-. .++.... ....-+.. ..+.++.+.||+||++
T Consensus 320 g~~l~~~~~~G~l~~~d~~t-G~~~~----------~~~~~~~~~~~sp~~~-~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSRED-GSFVA----------RLKTDGSGIASPPVVV-GDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCC-CCEEE----------EEEcCCCccccCCEEE-CCEEEEEeCCceEEEe
Confidence 45777888999999985433 21100 0000000 00111223 3568888999999986
No 34
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=69.10 E-value=92 Score=28.78 Aligned_cols=98 Identities=16% Similarity=0.376 Sum_probs=50.6
Q ss_pred eeeeecccCCCCEEE-EEeCCceEEEE-ecCCeEEEEECCCCCccCCCCCCCcccceeeeccc-CCcEEEEEe-CCCeEE
Q 013365 114 TPLPIKALHSLRVKQ-IACGDSHCLAV-TVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFE-GVSIKMVAA-GAEHSV 189 (444)
Q Consensus 114 ~p~~v~~~~~~~i~~-Ia~G~~h~~~l-t~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~-~~~i~~ia~-G~~h~~ 189 (444)
.|..+..-.+ .|+. +-|-.+|+++- ++++.|-.|-.-.. +.++.++ +..|..+.. -+.+.+
T Consensus 135 pp~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg--------------t~v~sL~~~s~VtSlEvs~dG~il 199 (334)
T KOG0278|consen 135 PPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHRTG--------------TEVQSLEFNSPVTSLEVSQDGRIL 199 (334)
T ss_pred CchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEeccC--------------cEEEEEecCCCCcceeeccCCCEE
Confidence 3444443333 3554 45777887766 77899999965321 1111111 112222222 233444
Q ss_pred EEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCe
Q 013365 190 AVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREK 231 (444)
Q Consensus 190 ~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~ 231 (444)
.+..-+.|-.|-.+.++.| ..+..|..|..-.+..++
T Consensus 200 Tia~gssV~Fwdaksf~~l-----Ks~k~P~nV~SASL~P~k 236 (334)
T KOG0278|consen 200 TIAYGSSVKFWDAKSFGLL-----KSYKMPCNVESASLHPKK 236 (334)
T ss_pred EEecCceeEEeccccccce-----eeccCccccccccccCCC
Confidence 4445556777776666555 455666666555544444
No 35
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=68.73 E-value=12 Score=22.76 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.6
Q ss_pred CEEEEEeCC-ceEEEEecCCeEEEE
Q 013365 125 RVKQIACGD-SHCLAVTVEGEVQSW 148 (444)
Q Consensus 125 ~i~~Ia~G~-~h~~~lt~~G~vy~w 148 (444)
.+++|++|. ....+++.+|.||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 789999999 889999999999963
No 36
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=68.54 E-value=2.1e+02 Score=32.25 Aligned_cols=47 Identities=13% Similarity=0.067 Sum_probs=32.6
Q ss_pred ceeEEeCCCcEEEeecCCCcccccCCCCCccCceEeccCCCcEEecCCeeEEEeCCCCEEEEeCC
Q 013365 293 HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGRG 357 (444)
Q Consensus 293 ~~~~lt~~g~vy~wG~n~~gqlG~g~~~~~~~p~~v~~~~~~i~~G~~h~~~l~~~g~v~~wG~n 357 (444)
+.+-|+++|++|+=+ ..+......+.....|-++.|.+-.+.+.=-+
T Consensus 593 ~~~GLs~~~~Ly~n~------------------~~la~~~tSF~v~~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 593 VLFGLSSNGRLYANS------------------RLLASNCTSFAVTDSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred EEEEECCCCEEEECC------------------EEEecCCceEEEEcCEEEEEecCceEEEEECc
Confidence 677888889998611 23444556777788888888887777766443
No 37
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=66.28 E-value=2.1e+02 Score=31.55 Aligned_cols=162 Identities=10% Similarity=0.024 Sum_probs=84.3
Q ss_pred cCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCC--eeeccCCCCcEEEEEec-----CCeeEEEEcCCCEEEEEeC
Q 013365 26 AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP--TQLSALDGHEIVSVTCG-----ADHTTAYSESCMQVYSWGW 98 (444)
Q Consensus 26 ~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P--~~v~~~~~~~i~~i~~G-----~~~~~~l~~~~g~v~~wG~ 98 (444)
...++.+++++.|++|..=.. ++-.......-.| ..+...++.+|+.+.+- ..+.++++.+ |.+.-.-.
T Consensus 544 ~t~d~LllfTs~Grv~~l~~~---~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~-GyiKRi~l 619 (800)
T TIGR01063 544 STHDYLLFFTNRGKVYWLKVY---QIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKN-GVVKKTSL 619 (800)
T ss_pred cCCCeEEEEeCCCcEEEEEhh---hCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCC-CEEEEEEh
Confidence 456667899999999987221 2211111111111 12333345667766552 2356777777 87776644
Q ss_pred CCCCccCCCCCCCceeeeeecccCCCCEEEEE--eCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCC
Q 013365 99 GDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA--CGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGV 176 (444)
Q Consensus 99 n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia--~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~ 176 (444)
+.+-..... .-..+..-.+..++.+. ....+.+++|++|++|.+-.+.--..+....... .+..-++.
T Consensus 620 ~~~~~~~r~------G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~----~i~L~~~E 689 (800)
T TIGR01063 620 TEFSNIRSN------GIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVR----GIKLKNED 689 (800)
T ss_pred HHhhhhccC------CcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCee----cccCCCCC
Confidence 333211000 00011111233455443 3346789999999999997655444443222111 12222455
Q ss_pred cEEEEEe--CCCeEEEEeCCCCEEEee
Q 013365 177 SIKMVAA--GAEHSVAVAEDGELYGWG 201 (444)
Q Consensus 177 ~i~~ia~--G~~h~~~Lt~~G~vy~wG 201 (444)
+|+.+.+ ...+.+++|++|.+.-.-
T Consensus 690 ~Vv~~~~v~~~~~ll~vT~~G~~Kr~~ 716 (800)
T TIGR01063 690 FVVSLLVVSEESYLLIVTENGYGKRTS 716 (800)
T ss_pred EEEEEEEeccccEEEEEecCCcEEEEE
Confidence 6766654 334678888998777554
No 38
>PHA02713 hypothetical protein; Provisional
Probab=66.21 E-value=1.8e+02 Score=30.60 Aligned_cols=13 Identities=8% Similarity=0.118 Sum_probs=9.8
Q ss_pred EecCCeEEEEECC
Q 013365 139 VTVEGEVQSWGRN 151 (444)
Q Consensus 139 lt~~G~vy~wG~n 151 (444)
..-+|+||..|-.
T Consensus 395 ~~~~g~IYviGG~ 407 (557)
T PHA02713 395 CVLDQYIYIIGGR 407 (557)
T ss_pred EEECCEEEEEeCC
Confidence 3448999999953
No 39
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=66.18 E-value=2e+02 Score=31.28 Aligned_cols=161 Identities=11% Similarity=0.037 Sum_probs=85.9
Q ss_pred EecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEe--CCceEEEEecCCeEEEEECCCCC
Q 013365 77 TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNG 154 (444)
Q Consensus 77 ~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~--G~~h~~~lt~~G~vy~wG~n~~g 154 (444)
..-...+++++++ |-|-.--...+. +..+..-.+..++.+.. ..++.+++|++|++|.+-.+.--
T Consensus 491 i~~e~v~VilTk~-G~IKr~~~~~~~------------~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP 557 (735)
T TIGR01062 491 IPKEPVTIILSKM-GWVRSAKGHDID------------LSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP 557 (735)
T ss_pred ccCcceEEEEecC-CEEEeccccccc------------hhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC
Confidence 3456678888888 877654333221 12222223445555543 44568999999999999765432
Q ss_pred ccCCCCCCCccccee--eecccCCcEEEEEeCCC--eEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCC
Q 013365 155 QLGLGTTEDSLVPQK--LQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQRE 230 (444)
Q Consensus 155 qlG~~~~~~~~~p~~--v~~~~~~~i~~ia~G~~--h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~ 230 (444)
.|. ..-.|.. +..-++..|+.+.+... +.+++|+.|..+..-.+.+-....+. ..+..+. .+.
T Consensus 558 -~GR----~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~RaG-------Kgvi~Lk-~~d 624 (735)
T TIGR01062 558 -SAR----GQGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKAG-------KALINLP-ENA 624 (735)
T ss_pred -cCc----cCCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcCC-------eEEEEeC-CCC
Confidence 122 1112222 22235667887776543 57888999977765433321111000 0111111 122
Q ss_pred eEEEE--EecC-ceEEEEeCCCCEEEEeCCCCCccc
Q 013365 231 KMVMV--ACGW-RHTISVSSSGRLYSYGWSKYGQLG 263 (444)
Q Consensus 231 ~i~~I--a~G~-~hs~~lt~~G~vy~~G~n~~gqLG 263 (444)
.++.+ ..+. .+.++++++|++..+--+.--+++
T Consensus 625 ~lv~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~g 660 (735)
T TIGR01062 625 SVIAPLPVNGDSDMIAAITEAGRMLVFPIDDLPELS 660 (735)
T ss_pred EEEEEEEEcCCCCEEEEEeCCCcEEEEEHHHCCccC
Confidence 33321 1233 257789999999888765544443
No 40
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=65.99 E-value=98 Score=27.54 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=64.1
Q ss_pred ceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCC-eeEEEEc-CCCEEEEEeCCCCCccCCC
Q 013365 30 HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD-HTTAYSE-SCMQVYSWGWGDFGRLGHG 107 (444)
Q Consensus 30 ~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~-~~~~l~~-~~g~v~~wG~n~~gqlG~~ 107 (444)
..++...+|.++.|-.... .....+... ...+..+....+ ..++... + |.|+.|-......
T Consensus 65 ~l~~~~~~~~i~i~~~~~~-----------~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~---- 127 (289)
T cd00200 65 YLASGSSDKTIRLWDLETG-----------ECVRTLTGH-TSYVSSVAFSPDGRILSSSSRD-KTIKVWDVETGKC---- 127 (289)
T ss_pred EEEEEcCCCeEEEEEcCcc-----------cceEEEecc-CCcEEEEEEcCCCCEEEEecCC-CeEEEEECCCcEE----
Confidence 3444445788887754422 111222211 124666665543 3333444 5 8999986542111
Q ss_pred CCCCceeeeeecccCCCCEEEEEeCC-ceEEEEec-CCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCC
Q 013365 108 NSSDLFTPLPIKALHSLRVKQIACGD-SHCLAVTV-EGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA 185 (444)
Q Consensus 108 ~~~~~~~p~~v~~~~~~~i~~Ia~G~-~h~~~lt~-~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~ 185 (444)
...+. .....|..+.... ...++... +|.|+.|-.+....+ ..+. .....|..+..-.
T Consensus 128 -------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~-----------~~~~-~~~~~i~~~~~~~ 187 (289)
T cd00200 128 -------LTTLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV-----------ATLT-GHTGEVNSVAFSP 187 (289)
T ss_pred -------EEEec-cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccc-----------eeEe-cCccccceEEECC
Confidence 11111 1122466666655 33344444 889999864321000 0111 1112344444433
Q ss_pred C--eEEEEeCCCCEEEeeC
Q 013365 186 E--HSVAVAEDGELYGWGW 202 (444)
Q Consensus 186 ~--h~~~Lt~~G~vy~wG~ 202 (444)
+ ..++...+|.|+.|-.
T Consensus 188 ~~~~l~~~~~~~~i~i~d~ 206 (289)
T cd00200 188 DGEKLLSSSSDGTIKLWDL 206 (289)
T ss_pred CcCEEEEecCCCcEEEEEC
Confidence 3 4555556888888854
No 41
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=65.66 E-value=1.5e+02 Score=29.68 Aligned_cols=196 Identities=11% Similarity=0.032 Sum_probs=89.1
Q ss_pred CCEEEEec-CCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeec--cCCCCcEEEEEecCCeeEEEEcCCCEEEE
Q 013365 19 RPVLLISA-GASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLS--ALDGHEIVSVTCGADHTTAYSESCMQVYS 95 (444)
Q Consensus 19 ~~i~~ia~-G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~--~~~~~~i~~i~~G~~~~~~l~~~~g~v~~ 95 (444)
.+|+.+.- -..+.++|.+||.+.+. |-.|.. ....+..+. .....++-.+..+.+-.++++.+ +++|.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy--~~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~-~~~~~ 151 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVY--DLFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGN-NRFYV 151 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEE--eCCCce------eechhhhccccCcccccccccccCCCCEEEECCC-CeEEE
Confidence 45665553 34567777888887765 222322 111122221 11112233345555667778887 99998
Q ss_pred EeCCCCC-ccCCCCCCCceeeeeec---ccC-CCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceee
Q 013365 96 WGWGDFG-RLGHGNSSDLFTPLPIK---ALH-SLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (444)
Q Consensus 96 wG~n~~g-qlG~~~~~~~~~p~~v~---~~~-~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v 170 (444)
--....- .+..-. ..|.... ... ...+..+......-+.+...+.++..-.+...+ +
T Consensus 152 v~n~~~~~~~~~~~----~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--------------i 213 (410)
T PF04841_consen 152 VNNIDEPVKLRRLP----EIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--------------I 213 (410)
T ss_pred EeCccccchhhccc----cCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--------------c
Confidence 8433321 000000 0111111 000 111222222223334444455666443332211 1
Q ss_pred ecccCCcEEEEEeC--CCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceEEEEeCC
Q 013365 171 QAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSS 248 (444)
Q Consensus 171 ~~~~~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~ 248 (444)
. ...++.+|+.. ..|.++++++|++|..-. ++.+.- .++. .........-..||.+ +++|.-.
T Consensus 214 ~--~~~~i~~iavSpng~~iAl~t~~g~l~v~ss-Df~~~~----------~e~~-~~~~~~p~~~~WCG~d-av~l~~~ 278 (410)
T PF04841_consen 214 D--SDGPIIKIAVSPNGKFIALFTDSGNLWVVSS-DFSEKL----------CEFD-TDSKSPPKQMAWCGND-AVVLSWE 278 (410)
T ss_pred c--CCCCeEEEEECCCCCEEEEEECCCCEEEEEC-ccccee----------EEee-cCcCCCCcEEEEECCC-cEEEEeC
Confidence 1 12356666655 567888899999997642 221110 0010 0011223344577765 5555556
Q ss_pred CCEEEEeC
Q 013365 249 GRLYSYGW 256 (444)
Q Consensus 249 G~vy~~G~ 256 (444)
..|+..|.
T Consensus 279 ~~l~lvg~ 286 (410)
T PF04841_consen 279 DELLLVGP 286 (410)
T ss_pred CEEEEECC
Confidence 67777773
No 42
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=64.85 E-value=2.3e+02 Score=31.35 Aligned_cols=165 Identities=10% Similarity=0.016 Sum_probs=82.7
Q ss_pred EecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeC-----CceEEEEecCCeEEEEECC
Q 013365 77 TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGRN 151 (444)
Q Consensus 77 ~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G-----~~h~~~lt~~G~vy~wG~n 151 (444)
+...++.+++|+. |++|..-....-..+... ........+....+++|+.+.+- ....+++|++|.+.-.-.+
T Consensus 543 ~~t~d~LllfTs~-Grv~~l~~~~IP~~~r~~-~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~ 620 (800)
T TIGR01063 543 ASTHDYLLFFTNR-GKVYWLKVYQIPEASRTA-KGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLT 620 (800)
T ss_pred ecCCCeEEEEeCC-CcEEEEEhhhCcCCCcCC-CCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhH
Confidence 3445567777877 999998433222211110 00000011233456677776652 2357889999988776533
Q ss_pred CCCccCCCCCCCcccceeeecccCCcEEEE--EeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCC
Q 013365 152 QNGQLGLGTTEDSLVPQKLQAFEGVSIKMV--AAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQR 229 (444)
Q Consensus 152 ~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i--a~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~ 229 (444)
.+-..... -...+..-.+..++.+ +...++.+++|++|++|.+-...--..+.... ...+..+. .+
T Consensus 621 ~~~~~~r~------G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~-----Gv~~i~L~-~~ 688 (800)
T TIGR01063 621 EFSNIRSN------GIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAAR-----GVRGIKLK-NE 688 (800)
T ss_pred HhhhhccC------CcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCC-----CeecccCC-CC
Confidence 32111000 0000100112234433 23446799999999999886544333332211 11111111 24
Q ss_pred CeEEEEEec--CceEEEEeCCCCEEEEe
Q 013365 230 EKMVMVACG--WRHTISVSSSGRLYSYG 255 (444)
Q Consensus 230 ~~i~~Ia~G--~~hs~~lt~~G~vy~~G 255 (444)
++|+.+.+- ..+.+++|++|.+.-.=
T Consensus 689 E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~ 716 (800)
T TIGR01063 689 DFVVSLLVVSEESYLLIVTENGYGKRTS 716 (800)
T ss_pred CEEEEEEEeccccEEEEEecCCcEEEEE
Confidence 567666542 33577888888766553
No 43
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=64.45 E-value=17 Score=21.96 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.4
Q ss_pred cEEEEEeCC-CeEEEEeCCCCEEEe
Q 013365 177 SIKMVAAGA-EHSVAVAEDGELYGW 200 (444)
Q Consensus 177 ~i~~ia~G~-~h~~~Lt~~G~vy~w 200 (444)
.+++|++|. ....+++.+|.+|..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 689999999 899999999999953
No 44
>PHA02713 hypothetical protein; Provisional
Probab=63.35 E-value=85 Score=32.95 Aligned_cols=15 Identities=20% Similarity=0.204 Sum_probs=10.7
Q ss_pred EEEEeCCCCEEEeeC
Q 013365 188 SVAVAEDGELYGWGW 202 (444)
Q Consensus 188 ~~~Lt~~G~vy~wG~ 202 (444)
..+..-+|+||++|-
T Consensus 345 ~~~~~~~g~IYviGG 359 (557)
T PHA02713 345 FSLAVIDDTIYAIGG 359 (557)
T ss_pred eeEEEECCEEEEECC
Confidence 334455789999994
No 45
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=62.78 E-value=1.3e+02 Score=28.27 Aligned_cols=139 Identities=20% Similarity=0.178 Sum_probs=73.7
Q ss_pred CCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEec---CceEEEEeCCCCEEEEeCCC-C
Q 013365 184 GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG---WRHTISVSSSGRLYSYGWSK-Y 259 (444)
Q Consensus 184 G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G---~~hs~~lt~~G~vy~~G~n~-~ 259 (444)
+.-|.++...||.||.-+.. .|.+|.-+ ...-+++.+..| .-|.+++..||..|.+-... -
T Consensus 62 ~ap~dvapapdG~VWft~qg-~gaiGhLd--------------P~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI 126 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQG-TGAIGHLD--------------PATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAI 126 (353)
T ss_pred CCccccccCCCCceEEecCc-cccceecC--------------CCCCceEEEecCCCCCCceEEECCCCCeeEecCccee
Confidence 45677888899999965432 23333211 112234444333 34888899999999875432 1
Q ss_pred CcccCCCCCCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecC-CCcccccCCCCCccCceEeccCCCcEEec
Q 013365 260 GQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWN-KFGQVGVGDNVDHCSPVQVKFPLDQISCG 338 (444)
Q Consensus 260 gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n-~~gqlG~g~~~~~~~p~~v~~~~~~i~~G 338 (444)
+.++..+.. .++.+.. .+.+-+.-.+.+++..|.||.-|.+ .||.|--....-... +.+ .-+
T Consensus 127 ~R~dpkt~e----vt~f~lp-----~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vf----paP----qG~ 189 (353)
T COG4257 127 GRLDPKTLE----VTRFPLP-----LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVF----PAP----QGG 189 (353)
T ss_pred EEecCcccc----eEEeecc-----cccCCCcccceeeCCCccEEEeeccccceecCcccCceeee----ccC----CCC
Confidence 222211111 1111111 2234455678899999999999974 344442111110011 111 223
Q ss_pred CCeeEEEeCCCCEEEE
Q 013365 339 WRHTLAVTERQNVFSW 354 (444)
Q Consensus 339 ~~h~~~l~~~g~v~~w 354 (444)
.-.-++.+.||+||.-
T Consensus 190 gpyGi~atpdGsvwya 205 (353)
T COG4257 190 GPYGICATPDGSVWYA 205 (353)
T ss_pred CCcceEECCCCcEEEE
Confidence 4566788899999875
No 46
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=62.19 E-value=23 Score=20.39 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=20.9
Q ss_pred CCCEEEEEeCCceEEEEecCCeEEE
Q 013365 123 SLRVKQIACGDSHCLAVTVEGEVQS 147 (444)
Q Consensus 123 ~~~i~~Ia~G~~h~~~lt~~G~vy~ 147 (444)
++.|..|++|.....+.|+.+-|-.
T Consensus 1 gE~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 1 GEEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred CceEEEEEccCCEEEEEeCCCeEEe
Confidence 3579999999999999998886644
No 47
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=61.19 E-value=2.5e+02 Score=30.57 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=60.5
Q ss_pred ceEEEEcCCeEEEEeCCCCCCCCCC------CC-CC--CcCCeeecc-CCCCcEEEEEecCCee-EEEEcCCCEEEE---
Q 013365 30 HSVALLSGNIVCSWGRGEDGQLGHG------DA-ED--RLSPTQLSA-LDGHEIVSVTCGADHT-TAYSESCMQVYS--- 95 (444)
Q Consensus 30 ~~~~l~~~g~v~~wG~n~~gqlG~~------~~-~~--~~~P~~v~~-~~~~~i~~i~~G~~~~-~~l~~~~g~v~~--- 95 (444)
..++...|+.+|+|=.+....+-.. .. .. ....+.+.. .....|.+|....... ++|.-. ..|++
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~-~~v~V~~L 112 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGP-RGVVVLEL 112 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcC-CcEEEEEe
Confidence 4456666899999987776543221 11 00 111122211 1124577777665433 455544 33332
Q ss_pred ---EeCCCCCccCCCCCCCceeeeeeccc---CCCCEEEEE-----eCCceEEEEecCCeEEEEE
Q 013365 96 ---WGWGDFGRLGHGNSSDLFTPLPIKAL---HSLRVKQIA-----CGDSHCLAVTVEGEVQSWG 149 (444)
Q Consensus 96 ---wG~n~~gqlG~~~~~~~~~p~~v~~~---~~~~i~~Ia-----~G~~h~~~lt~~G~vy~wG 149 (444)
||.+..-+.|.....-...|.--..+ ....|+++. ..+.|.++||+|+.+-.+-
T Consensus 113 P~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~ 177 (717)
T PF10168_consen 113 PRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYD 177 (717)
T ss_pred ccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEe
Confidence 66554333333222222222221222 234677875 3479999999999866654
No 48
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=60.30 E-value=1.9e+02 Score=29.03 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=76.3
Q ss_pred CEEEEEeCC--ceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEe--CCCCEEEe
Q 013365 125 RVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVA--EDGELYGW 200 (444)
Q Consensus 125 ~i~~Ia~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt--~~G~vy~w 200 (444)
++..++... ++.++=|..|++|.|--++---|-. ..... ..|..+...++-++++| +||.|++|
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v----------~~aHY--Q~ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV----------LSAHY--QSITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHH----------HHhhc--cceeEEEEeCCCcEEEecCCCccEEEE
Confidence 455665543 3334445899999996544211100 01111 13555555555555555 78999999
Q ss_pred eCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCce--EE--EEeCCCCEEEEeCCCCCcccCCCCCCceeeeee
Q 013365 201 GWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRH--TI--SVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQL 276 (444)
Q Consensus 201 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~h--s~--~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v 276 (444)
=.-+ +-.......|.++..+..-...|+++.+|..- +. -..+|..+-.|--.. | ..-..+
T Consensus 151 ~l~~-----lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~-g----------~LLlti 214 (476)
T KOG0646|consen 151 LLTD-----LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL-G----------VLLLTI 214 (476)
T ss_pred EEEe-----ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc-c----------eeeEEE
Confidence 5322 11112222444454555445678887776652 11 112333344442211 1 111222
Q ss_pred ccccCCcEEEEecCCCceeEEeCCCcEEEeec
Q 013365 277 EALRESFISQISGGWRHTMAVTSDGKLYGWGW 308 (444)
Q Consensus 277 ~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~ 308 (444)
..+.......+.-+..+.++=+++|++|..=.
T Consensus 215 ~fp~si~av~lDpae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 215 TFPSSIKAVALDPAERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred ecCCcceeEEEcccccEEEecCCcceEEeeeh
Confidence 22222223334556677777788888887543
No 49
>PRK05560 DNA gyrase subunit A; Validated
Probab=59.12 E-value=2.9e+02 Score=30.61 Aligned_cols=214 Identities=14% Similarity=0.094 Sum_probs=104.2
Q ss_pred cCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCC--eeeccCCCCcEEEEEecC-----CeeEEEEcCCCEEEEEeC
Q 013365 26 AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP--TQLSALDGHEIVSVTCGA-----DHTTAYSESCMQVYSWGW 98 (444)
Q Consensus 26 ~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P--~~v~~~~~~~i~~i~~G~-----~~~~~l~~~~g~v~~wG~ 98 (444)
...++.+++++.|++|..=... +-.......-.| ..+...++.+|+.+.+-. ...++++++ |.+.---.
T Consensus 546 ~t~d~LllfTs~Grv~~l~v~~---iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~-GyiKRi~l 621 (805)
T PRK05560 546 STHDTLLFFTNRGRVYRLKVYE---IPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKN-GTVKKTSL 621 (805)
T ss_pred cCCCeEEEEecCCeEEEEEhhh---CcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCC-CEEEEEEh
Confidence 4566678899999999775432 211111111111 123334456777766644 356777777 87776543
Q ss_pred CCCCccCCCCCCCceeeeeecccCCCCEEEEEe--CCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCC
Q 013365 99 GDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGV 176 (444)
Q Consensus 99 n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~--G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~ 176 (444)
.++-....+ -...+..-.+..++.+.. ...+.+++|++|++|.+-...--..+....... .+..-++.
T Consensus 622 ~~~~~~~r~------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~----~i~L~~~E 691 (805)
T PRK05560 622 SEFSNIRSN------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVR----GIKLREGD 691 (805)
T ss_pred HHhhhcccC------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcc----cccCCCCC
Confidence 333211100 011111113445554433 445789999999999997554333332211111 01112345
Q ss_pred cEEEEEeCC---CeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEE--EecCceEEEEeCCCCE
Q 013365 177 SIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMV--ACGWRHTISVSSSGRL 251 (444)
Q Consensus 177 ~i~~ia~G~---~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~I--a~G~~hs~~lt~~G~v 251 (444)
+|+.+.+-. .+.+++|+.|.+.-.-.+.+-....+. .......+...+..++.+ ..+....++++.+|++
T Consensus 692 ~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~-----kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~ 766 (805)
T PRK05560 692 EVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG-----KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKL 766 (805)
T ss_pred EEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC-----CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeE
Confidence 666665432 267888888876654322211100000 000111111112233332 2344457788888888
Q ss_pred EEEeCCC
Q 013365 252 YSYGWSK 258 (444)
Q Consensus 252 y~~G~n~ 258 (444)
.-+-.+.
T Consensus 767 lrf~~~e 773 (805)
T PRK05560 767 IRTRVSE 773 (805)
T ss_pred EEEEHHH
Confidence 7765443
No 50
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=57.74 E-value=1.4e+02 Score=26.53 Aligned_cols=148 Identities=15% Similarity=0.153 Sum_probs=70.5
Q ss_pred CCCEEEEecCC--CceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCC--eeEEEEcCCCEE
Q 013365 18 FRPVLLISAGA--SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQV 93 (444)
Q Consensus 18 ~~~i~~ia~G~--~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~--~~~~l~~~~g~v 93 (444)
..+|..++.-. ...++...+|.++.|-..... ....+... ...+..+....+ +.++...+ |.|
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----------~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~-~~i 75 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----------LLRTLKGH-TGPVRDVAASADGTYLASGSSD-KTI 75 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----------cEEEEecC-CcceeEEEECCCCCEEEEEcCC-CeE
Confidence 34566666544 344444568999999654321 11111111 123334443333 34444445 899
Q ss_pred EEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCc-eEEEEec-CCeEEEEECCCCCccCCCCCCCcccceeee
Q 013365 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS-HCLAVTV-EGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (444)
Q Consensus 94 ~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~-h~~~lt~-~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 171 (444)
+.|-..... ....+.. ....|..+..... ..++... +|.|+.|-....... ..+.
T Consensus 76 ~i~~~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----------~~~~ 132 (289)
T cd00200 76 RLWDLETGE-----------CVRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL-----------TTLR 132 (289)
T ss_pred EEEEcCccc-----------ceEEEec-cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE-----------EEec
Confidence 998654321 1111111 1225666665543 3444444 899999965421100 1111
Q ss_pred cccCCcEEEEEeCC-CeEEEEeC-CCCEEEeeC
Q 013365 172 AFEGVSIKMVAAGA-EHSVAVAE-DGELYGWGW 202 (444)
Q Consensus 172 ~~~~~~i~~ia~G~-~h~~~Lt~-~G~vy~wG~ 202 (444)
.....|..+.... ...++... +|.|+.|-.
T Consensus 133 -~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 133 -GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164 (289)
T ss_pred -cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence 1112355555444 23333334 888888854
No 51
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=57.42 E-value=1.6e+02 Score=27.18 Aligned_cols=46 Identities=26% Similarity=0.433 Sum_probs=27.6
Q ss_pred CcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCC-cCCCCCCCccceeee
Q 013365 176 VSIKMVAAGAEHSVAVAEDGELYGWGWGRYGN-LGLGDRNDRLIPEKV 222 (444)
Q Consensus 176 ~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gq-lG~~~~~~~~~p~~v 222 (444)
.+|-.++.-+.|-+ ..-||+||.|=+|..-. ++....-....|..+
T Consensus 63 gpiy~~~f~d~~Ll-s~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~ 109 (325)
T KOG0649|consen 63 GPIYYLAFHDDFLL-SGGDGLVYGWEWNEEEESLATKRLWEVKIPMQV 109 (325)
T ss_pred CCeeeeeeehhhee-eccCceEEEeeehhhhhhccchhhhhhcCcccc
Confidence 35666666655544 44569999999988655 444333333444444
No 52
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=56.10 E-value=2.3e+02 Score=28.54 Aligned_cols=155 Identities=11% Similarity=0.141 Sum_probs=72.4
Q ss_pred CEEEEecCCC--ceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCC--CcEEEEEecCCeeEEEEc-CCCEEE
Q 013365 20 PVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDG--HEIVSVTCGADHTTAYSE-SCMQVY 94 (444)
Q Consensus 20 ~i~~ia~G~~--~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~--~~i~~i~~G~~~~~~l~~-~~g~v~ 94 (444)
++..+++-.. +.++=+..|.+|+|=-++.-.| ..+.. +.|+.+....+-..+++. ++|.|+
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL--------------~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~ 148 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILL--------------NVLSAHYQSITCLKFSDDGSHIITGSKDGAVL 148 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHH--------------HHHHhhccceeEEEEeCCCcEEEecCCCccEE
Confidence 4555554433 2333336899999976554322 11111 346666666666666553 238999
Q ss_pred EEeCCCCCccCCCCCCCceeeeeecccCC--CCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeec
Q 013365 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHS--LRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA 172 (444)
Q Consensus 95 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~--~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~ 172 (444)
+|---+-- ...+...|.|+..+.+ ..|+++.+|..- .+.+||+-+....-.+-.-... ..-..+..
T Consensus 149 vW~l~~lv-----~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg-----~~~rl~TaS~D~t~k~wdlS~g--~LLlti~f 216 (476)
T KOG0646|consen 149 VWLLTDLV-----SADNDHSVKPLHIFSDHTLSITDLQIGSGG-----TNARLYTASEDRTIKLWDLSLG--VLLLTITF 216 (476)
T ss_pred EEEEEeec-----ccccCCCccceeeeccCcceeEEEEecCCC-----ccceEEEecCCceEEEEEeccc--eeeEEEec
Confidence 99632211 1111224555554433 368888777653 2334444332111000000000 00011111
Q ss_pred ccCCcEEEEEeCCCeEEEEeCCCCEEEe
Q 013365 173 FEGVSIKMVAAGAEHSVAVAEDGELYGW 200 (444)
Q Consensus 173 ~~~~~i~~ia~G~~h~~~Lt~~G~vy~w 200 (444)
....+-+.+.-+..+.++=+++|.+|..
T Consensus 217 p~si~av~lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred CCcceeEEEcccccEEEecCCcceEEee
Confidence 1111233344566777777888888854
No 53
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=55.83 E-value=1.7e+02 Score=27.07 Aligned_cols=148 Identities=16% Similarity=0.330 Sum_probs=71.1
Q ss_pred cceeeecccCCcEE-EEEeCCCeEEEE-eCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEe-cCceE
Q 013365 166 VPQKLQAFEGVSIK-MVAAGAEHSVAV-AEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC-GWRHT 242 (444)
Q Consensus 166 ~p~~v~~~~~~~i~-~ia~G~~h~~~L-t~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~-G~~hs 242 (444)
.|..+..-.+ .|+ .+.|-.+|+++- ++++.|-.|-.-. -+.+..+.+ +..|++.-. -..+.
T Consensus 135 pp~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT--------------gt~v~sL~~-~s~VtSlEvs~dG~i 198 (334)
T KOG0278|consen 135 PPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHRT--------------GTEVQSLEF-NSPVTSLEVSQDGRI 198 (334)
T ss_pred CchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEecc--------------CcEEEEEec-CCCCcceeeccCCCE
Confidence 4455544443 243 456877887766 7888888885322 112222221 112222211 12233
Q ss_pred EEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeecc--ccCCcEEEEecCCCceeEEeCCCcEEEeecCCCcccccCCCC
Q 013365 243 ISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEA--LRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNV 320 (444)
Q Consensus 243 ~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~--~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~g~~~ 320 (444)
+.+...+.|-.|-.+.++.| .....|..|.. |...+=.-|+.| ++..+|-+-++.--.+|.-
T Consensus 199 lTia~gssV~Fwdaksf~~l-----Ks~k~P~nV~SASL~P~k~~fVaGg--------ed~~~~kfDy~TgeEi~~~--- 262 (334)
T KOG0278|consen 199 LTIAYGSSVKFWDAKSFGLL-----KSYKMPCNVESASLHPKKEFFVAGG--------EDFKVYKFDYNTGEEIGSY--- 262 (334)
T ss_pred EEEecCceeEEeccccccce-----eeccCccccccccccCCCceEEecC--------cceEEEEEeccCCceeeec---
Confidence 44444556777777777766 33334555542 222221112222 3445555554433222220
Q ss_pred CccCceEeccCCCcEEecCCeeEEEeCCCCEEEEeCC
Q 013365 321 DHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGRG 357 (444)
Q Consensus 321 ~~~~p~~v~~~~~~i~~G~~h~~~l~~~g~v~~wG~n 357 (444)
.+=--|.-|++=.+.+|++|+-|+.
T Consensus 263 ------------nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 263 ------------NKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred ------------ccCCCCceEEEEECCCCceeeccCC
Confidence 1112244577777778888887763
No 54
>PHA03098 kelch-like protein; Provisional
Probab=55.44 E-value=2.6e+02 Score=28.98 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=11.9
Q ss_pred ceEEEEecCCeEEEEECCC
Q 013365 134 SHCLAVTVEGEVQSWGRNQ 152 (444)
Q Consensus 134 ~h~~~lt~~G~vy~wG~n~ 152 (444)
.|+++. -+|+||.+|-..
T Consensus 335 ~~~~~~-~~~~lyv~GG~~ 352 (534)
T PHA03098 335 NPGVTV-FNNRIYVIGGIY 352 (534)
T ss_pred cceEEE-ECCEEEEEeCCC
Confidence 444444 478999999543
No 55
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=55.35 E-value=1.8e+02 Score=27.18 Aligned_cols=15 Identities=33% Similarity=0.811 Sum_probs=11.5
Q ss_pred ceEEEEeCCCCEEEEe
Q 013365 240 RHTISVSSSGRLYSYG 255 (444)
Q Consensus 240 ~hs~~lt~~G~vy~~G 255 (444)
.|+.++ -+|++|.||
T Consensus 243 SHS~fv-Yng~~Y~FG 257 (392)
T KOG4693|consen 243 SHSTFV-YNGKMYMFG 257 (392)
T ss_pred ccceEE-EcceEEEec
Confidence 566655 489999999
No 56
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=55.21 E-value=1.4e+02 Score=31.59 Aligned_cols=57 Identities=19% Similarity=0.175 Sum_probs=31.9
Q ss_pred EEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEE---EEecCceEEEEeCCCCEEEEeC
Q 013365 190 AVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVM---VACGWRHTISVSSSGRLYSYGW 256 (444)
Q Consensus 190 ~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~---Ia~G~~hs~~lt~~G~vy~~G~ 256 (444)
+..-++.||+.|-... + .....+...+....+.+. +.....+.-+..-++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~---------~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-T---------SALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-C---------CccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 5556889999983321 1 111113333332333333 3445566666777899999985
No 57
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=54.46 E-value=2.2e+02 Score=27.96 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=12.9
Q ss_pred ceEEEEecCCeEEEEECC
Q 013365 134 SHCLAVTVEGEVQSWGRN 151 (444)
Q Consensus 134 ~h~~~lt~~G~vy~wG~n 151 (444)
.|+++...+++||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 456555468999999964
No 58
>PRK05560 DNA gyrase subunit A; Validated
Probab=52.25 E-value=3.7e+02 Score=29.79 Aligned_cols=163 Identities=10% Similarity=0.062 Sum_probs=84.0
Q ss_pred EecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeee--eecccCCCCEEEEEeCC-----ceEEEEecCCeEEEEE
Q 013365 77 TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPL--PIKALHSLRVKQIACGD-----SHCLAVTVEGEVQSWG 149 (444)
Q Consensus 77 ~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~--~v~~~~~~~i~~Ia~G~-----~h~~~lt~~G~vy~wG 149 (444)
+...+..+++|+. |++|..-...--..+. ...-.|. .+....+++|+.+.+-. ...+++|++|.+.-.-
T Consensus 545 ~~t~d~LllfTs~-Grv~~l~v~~iP~~~~---~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~ 620 (805)
T PRK05560 545 ASTHDTLLFFTNR-GRVYRLKVYEIPEASR---TARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTS 620 (805)
T ss_pred ecCCCeEEEEecC-CeEEEEEhhhCcCCCc---CCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEE
Confidence 3445567777877 9999986543222211 1111111 12334567788876644 4578899999877664
Q ss_pred CCCCCccCCCCCCCcccceeeecccCCcEEEEE--eCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeec
Q 013365 150 RNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVA--AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDL 227 (444)
Q Consensus 150 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia--~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~ 227 (444)
.+.+-....+ -...+..-++..++.+. ....+.+++|++|++|.+-...--..+... ....+..+ .
T Consensus 621 l~~~~~~~r~------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~-----~Gv~~i~L-~ 688 (805)
T PRK05560 621 LSEFSNIRSN------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTA-----RGVRGIKL-R 688 (805)
T ss_pred hHHhhhcccC------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCccc-----CCcccccC-C
Confidence 3332111000 00011111233444433 344678999999999988544322222111 11111122 1
Q ss_pred CCCeEEEEEecC---ceEEEEeCCCCEEEEe
Q 013365 228 QREKMVMVACGW---RHTISVSSSGRLYSYG 255 (444)
Q Consensus 228 ~~~~i~~Ia~G~---~hs~~lt~~G~vy~~G 255 (444)
.+++|+.+.+-. .+.+++|+.|.+.-.=
T Consensus 689 ~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~ 719 (805)
T PRK05560 689 EGDEVVSMDVVREDSQEILTVTENGYGKRTP 719 (805)
T ss_pred CCCEEEEEEEEcCCCcEEEEEEeCCeEEEEE
Confidence 245676665543 2577888888766543
No 59
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=51.01 E-value=1.7e+02 Score=33.28 Aligned_cols=120 Identities=20% Similarity=0.297 Sum_probs=61.3
Q ss_pred CEEEEEeCCce-EEEEe--cCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEE-eCCCeEEEE-eCCCCEEE
Q 013365 125 RVKQIACGDSH-CLAVT--VEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVA-AGAEHSVAV-AEDGELYG 199 (444)
Q Consensus 125 ~i~~Ia~G~~h-~~~lt--~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia-~G~~h~~~L-t~~G~vy~ 199 (444)
.+.+++....| +++++ +||.|-.|-.-. -.|.+.... -.......+.++.++. |++.+.+|+ ++||.|-.
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k--~~~~~~s~r---S~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK--LEGEGGSAR---SELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehh--hhcCcceee---eeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 56688888888 66664 789999996432 223221111 1112222444555553 455444443 78899888
Q ss_pred eeCCCCCCcCCCCCCCccceeeeeeeecCC-CeEEEEEec-----CceEEEEeCCCCEEEEeC
Q 013365 200 WGWGRYGNLGLGDRNDRLIPEKVATVDLQR-EKMVMVACG-----WRHTISVSSSGRLYSYGW 256 (444)
Q Consensus 200 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~-~~i~~Ia~G-----~~hs~~lt~~G~vy~~G~ 256 (444)
.+-+.+. .....+..+...+..+ ..++++-+- ..-.++.|..+.+..|+-
T Consensus 1125 ~~id~~~-------~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1125 LRIDHYN-------VSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred EEccccc-------cccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecc
Confidence 8765541 1112222222222111 134443221 112356788888888874
No 60
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=49.56 E-value=21 Score=22.34 Aligned_cols=18 Identities=33% Similarity=0.704 Sum_probs=15.3
Q ss_pred ceEEEEeCCCCEEEEeCC
Q 013365 240 RHTISVSSSGRLYSYGWS 257 (444)
Q Consensus 240 ~hs~~lt~~G~vy~~G~n 257 (444)
-+.++++.+|+||+.|..
T Consensus 15 ~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred EEEEEECCCCCEEEEEee
Confidence 357899999999999964
No 61
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=46.75 E-value=2e+02 Score=30.26 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=30.7
Q ss_pred EEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCc---EEEEecCCCceeEEeCCCcEEEeec
Q 013365 244 SVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESF---ISQISGGWRHTMAVTSDGKLYGWGW 308 (444)
Q Consensus 244 ~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~---i~~i~~G~~~~~~lt~~g~vy~wG~ 308 (444)
+..-++.||+.|-... +... .. ...-.+.... +..+.....+.-+..-++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~~----~~---VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSAL----SS---VERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCcc----ce---EEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 4455889999995332 1100 00 1111111111 2234456666767778899999985
No 62
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=45.07 E-value=2.8e+02 Score=26.43 Aligned_cols=18 Identities=11% Similarity=-0.040 Sum_probs=12.0
Q ss_pred ceeEEeCCCcEEEeecCC
Q 013365 293 HTMAVTSDGKLYGWGWNK 310 (444)
Q Consensus 293 ~~~~lt~~g~vy~wG~n~ 310 (444)
++.+...+++||++|-..
T Consensus 216 ~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 216 AASIKINESLLLCIGGFN 233 (323)
T ss_pred eeEEEECCCEEEEECCcC
Confidence 333445678999998543
No 63
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=43.54 E-value=3.3e+02 Score=26.74 Aligned_cols=180 Identities=12% Similarity=0.087 Sum_probs=0.0
Q ss_pred eeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCCC-e-------
Q 013365 116 LPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE-H------- 187 (444)
Q Consensus 116 ~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~-h------- 187 (444)
..+..-...-+..|..|...-.+++.||+...--...+-.+-.+...+...-.....++ .+.+|..+.. +
T Consensus 30 ~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p~~~~~~~~ 107 (352)
T TIGR02658 30 YTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADIELPEGPRFLVGTYP 107 (352)
T ss_pred EEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCc--EEeEEccCCCchhhccCcc
Q ss_pred -EEEEeCCCC-EEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcccCC
Q 013365 188 -SVAVAEDGE-LYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHG 265 (444)
Q Consensus 188 -~~~Lt~~G~-vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~vy~~G~n~~gqLG~~ 265 (444)
.++|+.||+ +|+.-......+..-+......-..+.... -..-...+....+++..||+.........|+ ..-
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~----~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~-~~~ 182 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD----CYHIFPTANDTFFMHCRDGSLAKVGYGTKGN-PKI 182 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC----CcEEEEecCCccEEEeecCceEEEEecCCCc-eEE
Q ss_pred CCCCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEE
Q 013365 266 DFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYG 305 (444)
Q Consensus 266 ~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~ 305 (444)
.....+.+.....+..- ..+.....-++++..|.||.
T Consensus 183 ~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~eG~V~~ 219 (352)
T TIGR02658 183 KPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYTGKIFQ 219 (352)
T ss_pred eeeeeecCCccccccCC---ceEcCCCcEEEEecCCeEEE
No 64
>PLN02153 epithiospecifier protein
Probab=43.38 E-value=3.1e+02 Score=26.42 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=11.9
Q ss_pred CCeEEEEeCCCCEEEeeC
Q 013365 185 AEHSVAVAEDGELYGWGW 202 (444)
Q Consensus 185 ~~h~~~Lt~~G~vy~wG~ 202 (444)
..|++++ .++++|++|-
T Consensus 129 ~~~~~~~-~~~~iyv~GG 145 (341)
T PLN02153 129 TFHSMAS-DENHVYVFGG 145 (341)
T ss_pred eeeEEEE-ECCEEEEECC
Confidence 3566655 4678999984
No 65
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=43.30 E-value=3.4e+02 Score=26.78 Aligned_cols=159 Identities=16% Similarity=0.268 Sum_probs=72.7
Q ss_pred CEEEEEeCCc-eE-EEEecCCe-EEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCC-CeEEEEeCCCCEEEe
Q 013365 125 RVKQIACGDS-HC-LAVTVEGE-VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA-EHSVAVAEDGELYGW 200 (444)
Q Consensus 125 ~i~~Ia~G~~-h~-~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~-~h~~~Lt~~G~vy~w 200 (444)
.+..|..|.. |. ++.+.||+ +|..+. .|.+ ..+.......+..|..|. -+.++++.||+...-
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~v-----------sviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v 94 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANR--DGTV-----------SVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYV 94 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEET--TSEE-----------EEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcC--CCeE-----------EEEECCcccEEEEEecCCCcceEEEcCCCCEEEE
Confidence 4666766543 55 55677776 777653 2222 234444455677777765 567889999996555
Q ss_pred eCCCCCCcCCCCCCCccceeeeeeeec----CCCeEEEEEecCc---eEEEEeCCCCEEEEeCCCCCcccCCCCCCceee
Q 013365 201 GWGRYGNLGLGDRNDRLIPEKVATVDL----QREKMVMVACGWR---HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVP 273 (444)
Q Consensus 201 G~n~~gqlG~~~~~~~~~p~~v~~~~~----~~~~i~~Ia~G~~---hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p 273 (444)
++...+++-.-+......-..++.... ...++..|.+... +.+.+.+.+++|.--.... .+
T Consensus 95 ~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~------------~~ 162 (369)
T PF02239_consen 95 ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP------------KN 162 (369)
T ss_dssp EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS------------SC
T ss_pred EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc------------cc
Confidence 543334443322221111111211110 1235555654322 5566777888887632211 01
Q ss_pred eeeccccCCcEEEEecC-CCceeEEeCCCcEEEeecCCCccccc
Q 013365 274 CQLEALRESFISQISGG-WRHTMAVTSDGKLYGWGWNKFGQVGV 316 (444)
Q Consensus 274 ~~v~~~~~~~i~~i~~G-~~~~~~lt~~g~vy~wG~n~~gqlG~ 316 (444)
..++.+..| .-|=.+++.+|+.|.-+.|....++.
T Consensus 163 --------~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~v 198 (369)
T PF02239_consen 163 --------LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAV 198 (369)
T ss_dssp --------EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEE
T ss_pred --------cceeeecccccccccccCcccceeeecccccceeEE
Confidence 113333333 23556777777776666555445543
No 66
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=41.80 E-value=6e+02 Score=29.30 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=44.9
Q ss_pred CCEEEEecCCCc-eEEEE--cCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEE-ecCCeeEEEEcCCCEEE
Q 013365 19 RPVLLISAGASH-SVALL--SGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVT-CGADHTTAYSESCMQVY 94 (444)
Q Consensus 19 ~~i~~ia~G~~~-~~~l~--~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~-~G~~~~~~l~~~~g~v~ 94 (444)
..+.+++....| +++++ +||.|-+|-.- ...|.+... +..-+ -...+.++..+. |+..+.+|+..++|.|-
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~--k~~~~~~s~-rS~lt--ys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLR--KLEGEGGSA-RSELT--YSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeeh--hhhcCccee-eeeEE--EeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 346688888888 77776 89999999542 233332111 11111 111333455543 55666666656559998
Q ss_pred EEeCCCC
Q 013365 95 SWGWGDF 101 (444)
Q Consensus 95 ~wG~n~~ 101 (444)
..+-+.+
T Consensus 1124 ~~~id~~ 1130 (1431)
T KOG1240|consen 1124 VLRIDHY 1130 (1431)
T ss_pred EEEcccc
Confidence 8875543
No 67
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=41.71 E-value=4.8e+02 Score=28.14 Aligned_cols=72 Identities=18% Similarity=0.341 Sum_probs=47.6
Q ss_pred CcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeec-------ccCCCCEEEEEeCCc----eEEEE
Q 013365 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIK-------ALHSLRVKQIACGDS----HCLAV 139 (444)
Q Consensus 71 ~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~-------~~~~~~i~~Ia~G~~----h~~~l 139 (444)
.+|..++...+.++++|.-+-.|-.|-- +.+. ....|.|+. .+....+.+|+||.. .+++|
T Consensus 166 s~Vsav~fsEdgSYfvT~gnrHvk~wyl----~~~~----KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfai 237 (1080)
T KOG1408|consen 166 SVVSAVAFSEDGSYFVTSGNRHVKLWYL----QIQS----KYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAI 237 (1080)
T ss_pred eeEEEEEEccCCceeeeeeeeeEEEEEe----eccc----cccCCccccchhhhccccccchhhhhhhcCcccccceEEE
Confidence 3577788888888888876345655532 1111 222344433 234446889999987 89999
Q ss_pred ecCCeEEEEEC
Q 013365 140 TVEGEVQSWGR 150 (444)
Q Consensus 140 t~~G~vy~wG~ 150 (444)
|..|.+..|-+
T Consensus 238 t~qGhLvEFSs 248 (1080)
T KOG1408|consen 238 TAQGHLVEFSS 248 (1080)
T ss_pred ecccceeeech
Confidence 99999988753
No 68
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=41.20 E-value=3.9e+02 Score=26.87 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=0.0
Q ss_pred cccccccccccCCCCCCCEEEEec-CC---CceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCC--CcEEEE
Q 013365 3 EASAASEAASTTAAPFRPVLLISA-GA---SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDG--HEIVSV 76 (444)
Q Consensus 3 ~~~a~~~~~~~~~~~~~~i~~ia~-G~---~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~--~~i~~i 76 (444)
.||-.+............+..++. +. .++.++-.||.+|.-|.-. |.-..-+...+..+..|++ ..|+.|
T Consensus 320 sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d----~~vkiwdlks~~~~a~Fpght~~vk~i 395 (506)
T KOG0289|consen 320 SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPD----GVVKIWDLKSQTNVAKFPGHTGPVKAI 395 (506)
T ss_pred EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCC----ceEEEEEcCCccccccCCCCCCceeEE
Q ss_pred EecCC-eeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEE
Q 013365 77 TCGAD-HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSW 148 (444)
Q Consensus 77 ~~G~~-~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~w 148 (444)
+.+.+ |-++...+++.|..| +-........+.......+..+..-..-.++......|+..
T Consensus 396 ~FsENGY~Lat~add~~V~lw-----------DLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 396 SFSENGYWLATAADDGSVKLW-----------DLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY 457 (506)
T ss_pred EeccCceEEEEEecCCeEEEE-----------EehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEE
No 69
>PLN02153 epithiospecifier protein
Probab=39.08 E-value=3.6e+02 Score=25.95 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=11.6
Q ss_pred CeeEEEEcCCCEEEEEeCC
Q 013365 81 DHTTAYSESCMQVYSWGWG 99 (444)
Q Consensus 81 ~~~~~l~~~~g~v~~wG~n 99 (444)
.|++++. + ++||++|--
T Consensus 130 ~~~~~~~-~-~~iyv~GG~ 146 (341)
T PLN02153 130 FHSMASD-E-NHVYVFGGV 146 (341)
T ss_pred eeEEEEE-C-CEEEEECCc
Confidence 4555554 4 799999854
No 70
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=37.27 E-value=6.5e+02 Score=28.40 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=24.0
Q ss_pred CCCCEEEEecCCCc--eEEEEcCCeEEEEeC
Q 013365 17 PFRPVLLISAGASH--SVALLSGNIVCSWGR 45 (444)
Q Consensus 17 ~~~~i~~ia~G~~~--~~~l~~~g~v~~wG~ 45 (444)
-+..|..|+...++ .++++.||.+..|=.
T Consensus 425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 46789999998888 799999998877753
No 71
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=36.99 E-value=3.8e+02 Score=25.55 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=12.3
Q ss_pred ceEEEEecCCeEEEEECCC
Q 013365 134 SHCLAVTVEGEVQSWGRNQ 152 (444)
Q Consensus 134 ~h~~~lt~~G~vy~wG~n~ 152 (444)
.|++++ -+++||.+|-..
T Consensus 116 ~~~~~~-~~~~iYv~GG~~ 133 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGNR 133 (323)
T ss_pred CceEEE-ECCEEEEEeCcC
Confidence 455544 478999999643
No 72
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=35.59 E-value=4.3e+02 Score=25.74 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=29.8
Q ss_pred CceeEEeCCCcEEEeecCCCcccccCCCCCccCceEecc---CCCcEEecCCeeEEEeCCCCEEEE
Q 013365 292 RHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKF---PLDQISCGWRHTLAVTERQNVFSW 354 (444)
Q Consensus 292 ~~~~~lt~~g~vy~wG~n~~gqlG~g~~~~~~~p~~v~~---~~~~i~~G~~h~~~l~~~g~v~~w 354 (444)
.+.++.+.+|.||++-... |++- .-.++.. ...-+..+ .+.++.+.+|+||++
T Consensus 321 ~~l~~~~~~G~l~~~d~~t-G~~~--------~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSRED-GSFV--------ARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCCEEEEEECCC-CCEE--------EEEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 4667778899999985432 2210 0000100 01123333 578888999999986
No 73
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=34.49 E-value=3.8e+02 Score=24.83 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=29.9
Q ss_pred CCEEEEEeCCceEEEEecCCeEEEEECCCCCc-cCCCCCCCcccceeeec
Q 013365 124 LRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQ-LGLGTTEDSLVPQKLQA 172 (444)
Q Consensus 124 ~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gq-lG~~~~~~~~~p~~v~~ 172 (444)
-+|-.++.-+.|.+ ..-||+||.|-.|..-. ++....-....|.....
T Consensus 63 gpiy~~~f~d~~Ll-s~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~ 111 (325)
T KOG0649|consen 63 GPIYYLAFHDDFLL-SGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDA 111 (325)
T ss_pred CCeeeeeeehhhee-eccCceEEEeeehhhhhhccchhhhhhcCccccCc
Confidence 36777777666554 44569999999887655 44443334445555543
No 74
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=33.46 E-value=1.1e+02 Score=29.47 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=39.6
Q ss_pred EEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCCee--EEEEcCCCEEEEEe
Q 013365 32 VALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHT--TAYSESCMQVYSWG 97 (444)
Q Consensus 32 ~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~--~~l~~~~g~v~~wG 97 (444)
++....|+||+|--.. .++...++......+..|++.+...+-+ +++.++ +.||-|-
T Consensus 323 a~gnq~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd-~~Vwrwd 381 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD-GTVWRWD 381 (385)
T ss_pred hhccCCCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEEeCC-CcEEEEE
Confidence 4455789999996321 2233667777777788899988877654 445666 9999885
No 75
>PHA02790 Kelch-like protein; Provisional
Probab=32.67 E-value=3e+02 Score=28.21 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=9.9
Q ss_pred EecCCeEEEEECC
Q 013365 139 VTVEGEVQSWGRN 151 (444)
Q Consensus 139 lt~~G~vy~wG~n 151 (444)
..-+|+||..|-.
T Consensus 315 v~~~~~iYviGG~ 327 (480)
T PHA02790 315 VPANNKLYVVGGL 327 (480)
T ss_pred EEECCEEEEECCc
Confidence 3458999999853
No 76
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=32.52 E-value=4.8e+02 Score=25.44 Aligned_cols=197 Identities=17% Similarity=0.144 Sum_probs=89.7
Q ss_pred EEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCc--------ccceeeecccCCcEEEEEeCCCeEEEEeCCCC-EE
Q 013365 128 QIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDS--------LVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGE-LY 198 (444)
Q Consensus 128 ~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~--------~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~-vy 198 (444)
.|..|...-++++.+|+-+.--.-.+-.+..|...+. ..|..--.++.. -...+.-..+.+.|+.||+ +|
T Consensus 32 mi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k-~R~~~~~~~~~~~ls~dgk~~~ 110 (342)
T PF06433_consen 32 MIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK-PRAQVVPYKNMFALSADGKFLY 110 (342)
T ss_dssp EEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS--B--BS--GGGEEE-TTSSEEE
T ss_pred EeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc-chheecccccceEEccCCcEEE
Confidence 5667777778888887644322222222222222211 111111112221 0112334677889998887 66
Q ss_pred EeeCCCCCCcCCCCCCCcccee-eeeeeecCCCeEEE----------EEecCceEEEEeCCCCEEEEeCCCCCcccCCCC
Q 013365 199 GWGWGRYGNLGLGDRNDRLIPE-KVATVDLQREKMVM----------VACGWRHTISVSSSGRLYSYGWSKYGQLGHGDF 267 (444)
Q Consensus 199 ~wG~n~~gqlG~~~~~~~~~p~-~v~~~~~~~~~i~~----------Ia~G~~hs~~lt~~G~vy~~G~n~~gqLG~~~~ 267 (444)
++- .+|. -|.-+++...+++. .-.|..-...|..||.+........|+.-
T Consensus 111 V~N---------------~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~---- 171 (342)
T PF06433_consen 111 VQN---------------FTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA---- 171 (342)
T ss_dssp EEE---------------ESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE----
T ss_pred EEc---------------cCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe----
Confidence 653 1221 23333333444333 13344555677888888877766666542
Q ss_pred CCceeeeeeccccCCcEE---EEecCCCceeEEeCCCcEEEeecCCCcccccCCCCCccCceEeccCC---CcEEecCCe
Q 013365 268 KDHLVPCQLEALRESFIS---QISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL---DQISCGWRH 341 (444)
Q Consensus 268 ~~~~~p~~v~~~~~~~i~---~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~g~~~~~~~p~~v~~~~---~~i~~G~~h 341 (444)
...+++-...+..+. .......+.++++-+|+||..-.... ......|..+.... ..-.-|.+.
T Consensus 172 ---~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~-------~~~~~~~~~~~t~~e~~~~WrPGG~Q 241 (342)
T PF06433_consen 172 ---QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGD-------SAKFGKPWSLLTDAEKADGWRPGGWQ 241 (342)
T ss_dssp ---EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTS-------SEEEEEEEESS-HHHHHTTEEE-SSS
T ss_pred ---EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCC-------cccccCcccccCccccccCcCCccee
Confidence 111222222222221 22345678888999999998653221 11111222221100 144556666
Q ss_pred eEEEe-CCCCEEEE
Q 013365 342 TLAVT-ERQNVFSW 354 (444)
Q Consensus 342 ~~~l~-~~g~v~~w 354 (444)
.+++. ..+.+|.-
T Consensus 242 ~~A~~~~~~rlyvL 255 (342)
T PF06433_consen 242 LIAYHAASGRLYVL 255 (342)
T ss_dssp -EEEETTTTEEEEE
T ss_pred eeeeccccCeEEEE
Confidence 67775 45677765
No 77
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=32.13 E-value=2e+02 Score=28.42 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=42.1
Q ss_pred EEEEEecCCe---eEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEE
Q 013365 73 IVSVTCGADH---TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWG 149 (444)
Q Consensus 73 i~~i~~G~~~---~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG 149 (444)
+..+.++.++ .+++..+ |++..|-.+.. +.++ .....+.+|..-....+|++..|+||.+.
T Consensus 162 ~~~~~~~~~~~~~vl~i~~~-g~l~~w~~~~W--------------t~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 162 LVKVKEGDNHRDGVLGIGRD-GKINYWDGNVL--------------KALK-QMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEeecCCCcceEEEEEeec-CcEeeecCCee--------------eEcc-CCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 3445566664 5566666 88888853322 1222 24557999999999999999999999986
No 78
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=31.80 E-value=8e+02 Score=27.80 Aligned_cols=204 Identities=10% Similarity=0.050 Sum_probs=0.0
Q ss_pred CCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCce--EEEEecCCeEEEEECCCCCccC
Q 013365 80 ADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSH--CLAVTVEGEVQSWGRNQNGQLG 157 (444)
Q Consensus 80 ~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h--~~~lt~~G~vy~wG~n~~gqlG 157 (444)
.+..+.++.+ |-+-.--...+..-+.+ ...+..-.+..+..+.....| .+++|+.|++|..-...--...
T Consensus 516 E~v~v~lS~~-GyIKr~~~~~~~~q~~g-------~~~~~~ke~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~ 587 (957)
T PRK13979 516 EDVVITLSNE-GFIKRIPLKSYNRSNSN-------VEDIEYREGDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFK 587 (957)
T ss_pred cceEEEEecC-CEEEEcccccccccccc-------ccccccCCCCceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCC
Q ss_pred CCCCCCcccceee-ecccCCcEEEEEeCCCe-----EEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCe
Q 013365 158 LGTTEDSLVPQKL-QAFEGVSIKMVAAGAEH-----SVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREK 231 (444)
Q Consensus 158 ~~~~~~~~~p~~v-~~~~~~~i~~ia~G~~h-----~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~ 231 (444)
.........-..- ..+++++|+.+.+-.++ .+++|++|.+.-.-...+ ...+..-.-+..-+ +..
T Consensus 588 ~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef-------~~~r~~~~aikL~e--~De 658 (957)
T PRK13979 588 WKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKF-------VTNYTKLMALKLKK--GEK 658 (957)
T ss_pred cCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhc-------cccccceEEEEcCC--CCE
Q ss_pred EEEEEecC-----ceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCC---------------
Q 013365 232 MVMVACGW-----RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW--------------- 291 (444)
Q Consensus 232 i~~Ia~G~-----~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--------------- 291 (444)
++.+.... .+.++++++|.+.-|-.+.-..+| ....--.-+....+..|+.+..-.
T Consensus 659 LV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mG----R~a~GVkgI~L~~~D~Vv~~~~~~~~~~~~~~~~~~~~~ 734 (957)
T PRK13979 659 LIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVD----RNIIGYQLFDLLPNDSIKKVDFCDNYEYKEFYVNINKKG 734 (957)
T ss_pred EEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccC----CCCcCeeeEeeCCCCEEEEEEEEhhhhhcchhhhccccc
Q ss_pred --------------------CceeEEeCCCcEE
Q 013365 292 --------------------RHTMAVTSDGKLY 304 (444)
Q Consensus 292 --------------------~~~~~lt~~g~vy 304 (444)
.+.+++|+.|++|
T Consensus 735 ~~~~~~~~~~~~~~i~~~T~d~Ll~FTn~Gkvy 767 (957)
T PRK13979 735 IIKISDKDNKSSISVFTNSSKNLLIFSDEGKVY 767 (957)
T ss_pred ceeecccccccccceeecCCceEEEEecCCeEE
No 79
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=31.38 E-value=54 Score=21.24 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=11.7
Q ss_pred CCceEEEEcCCeEEEEeC
Q 013365 28 ASHSVALLSGNIVCSWGR 45 (444)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~ 45 (444)
..|+++...+++||++|-
T Consensus 3 ~~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp BS-EEEEE-TTEEEEE--
T ss_pred ceEEEEEEeCCeEEEECC
Confidence 368888888899999983
No 80
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=30.87 E-value=2.1e+02 Score=28.34 Aligned_cols=62 Identities=21% Similarity=0.373 Sum_probs=45.5
Q ss_pred CEEEEEeCCce---EEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEee
Q 013365 125 RVKQIACGDSH---CLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWG 201 (444)
Q Consensus 125 ~i~~Ia~G~~h---~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG 201 (444)
.+..+.+++.+ .+++..+|++..|-.+ ..+.++ .....+.+|.-=....+|++..|+||++.
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~--------------~Wt~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGN--------------VLKALK-QMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCC--------------eeeEcc-CCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 34456777775 7778889999889532 233343 25557889988888899999999999886
No 81
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=28.58 E-value=5.7e+02 Score=25.05 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=13.0
Q ss_pred CeEEEEeCCCCEEEeeCC
Q 013365 186 EHSVAVAEDGELYGWGWG 203 (444)
Q Consensus 186 ~h~~~Lt~~G~vy~wG~n 203 (444)
.|+++...+++||++|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466555468999999853
No 82
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=27.72 E-value=6e+02 Score=25.01 Aligned_cols=156 Identities=15% Similarity=0.212 Sum_probs=70.5
Q ss_pred cEEEEEecCC-ee-EEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCC-ceEEEEecCCeEEEE
Q 013365 72 EIVSVTCGAD-HT-TAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-SHCLAVTVEGEVQSW 148 (444)
Q Consensus 72 ~i~~i~~G~~-~~-~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~-~h~~~lt~~G~vy~w 148 (444)
.+..|..|.. |. .+.+.|...+|+.+. .|. -..+.......+..|..|. -+.++++.||+...-
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~-----------vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v 94 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANR--DGT-----------VSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYV 94 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEET--TSE-----------EEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcC--CCe-----------EEEEECCcccEEEEEecCCCcceEEEcCCCCEEEE
Confidence 4566666554 44 334555235887653 222 2344444555677887765 567899999985554
Q ss_pred ECCCCCccCCCCCCCcccceeeec--c----cCCcEEEEEeC---CCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccce
Q 013365 149 GRNQNGQLGLGTTEDSLVPQKLQA--F----EGVSIKMVAAG---AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIP 219 (444)
Q Consensus 149 G~n~~gqlG~~~~~~~~~p~~v~~--~----~~~~i~~ia~G---~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p 219 (444)
+....+++-.-+......-..+.. . ...++..|.+. ..+.+.|.+.|++|.--.... .
T Consensus 95 ~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~------------~- 161 (369)
T PF02239_consen 95 ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP------------K- 161 (369)
T ss_dssp EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS------------S-
T ss_pred EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc------------c-
Confidence 543333443322211111111110 0 12245555432 235566777788876531110 0
Q ss_pred eeeeeeecCCCeEEEEEecC-ceEEEEeCCCCEEEEeCCCCCcc
Q 013365 220 EKVATVDLQREKMVMVACGW-RHTISVSSSGRLYSYGWSKYGQL 262 (444)
Q Consensus 220 ~~v~~~~~~~~~i~~Ia~G~-~hs~~lt~~G~vy~~G~n~~gqL 262 (444)
...+..+..+. -|=.+++.+|+.|.-+.+....+
T Consensus 162 ---------~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i 196 (369)
T PF02239_consen 162 ---------NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI 196 (369)
T ss_dssp ---------CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred ---------ccceeeecccccccccccCcccceeeeccccccee
Confidence 11333444443 36677888888766555444343
No 83
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=27.39 E-value=1.3e+02 Score=17.11 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=13.4
Q ss_pred eEEEEecCCeEEEEECC
Q 013365 135 HCLAVTVEGEVQSWGRN 151 (444)
Q Consensus 135 h~~~lt~~G~vy~wG~n 151 (444)
|.++++.+|+||..-.+
T Consensus 5 ~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSG 21 (28)
T ss_dssp EEEEEETTSEEEEEECC
T ss_pred cEEEEeCCCCEEEEECC
Confidence 67888899999987644
No 84
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=27.37 E-value=1.1e+02 Score=22.80 Aligned_cols=34 Identities=12% Similarity=0.287 Sum_probs=25.4
Q ss_pred CCCEEEEEeC-CceEEEEecCCeEEEEECCCCCcc
Q 013365 123 SLRVKQIACG-DSHCLAVTVEGEVQSWGRNQNGQL 156 (444)
Q Consensus 123 ~~~i~~Ia~G-~~h~~~lt~~G~vy~wG~n~~gql 156 (444)
+..=..|+|. ....++|++||.+|.-+--+.|.+
T Consensus 15 ~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 15 GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 3456788999 889999999999999885556554
No 85
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=26.96 E-value=9.1e+02 Score=26.99 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=25.8
Q ss_pred cEEecCCeeEEEeCCCCEEEEeCCCCCCCCCCC
Q 013365 334 QISCGWRHTLAVTERQNVFSWGRGTNGQLGHGE 366 (444)
Q Consensus 334 ~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~g~ 366 (444)
+|+......++...+|.|-.|=.+...|.-.-+
T Consensus 319 DiSsn~~alafgd~~g~v~~wa~~~~P~Fn~~s 351 (1118)
T KOG1275|consen 319 DISSNGDALAFGDHEGHVNLWADRPQPQFNEYS 351 (1118)
T ss_pred EecCCCceEEEecccCcEeeecCCCCCccCCCc
Confidence 677777777788888999999988888775443
No 86
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=26.54 E-value=3.4e+02 Score=21.73 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=39.4
Q ss_pred EEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEe
Q 013365 126 VKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGW 200 (444)
Q Consensus 126 i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~w 200 (444)
.+++.|-..+.+.+..||.|-.-+... +..... .+.......|.--..-....+++++.|+||.-
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~~-------~~~s~~---~i~~~~~g~V~i~~~~s~~YLcmn~~G~ly~~ 66 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDDN-------SPYSVF---EIHSVGFGVVRIRGVKSCRYLCMNKCGRLYGS 66 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESSTT-------STTGEE---EEEEEETTEEEEEETTTTEEEEEBTTSBEEEE
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCcC-------cceeEE---EEEeccceEEEEEEecceEEEEECCCCeEccc
Confidence 567778778889999999998776431 111111 12222221233233344667999999999975
No 87
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=26.14 E-value=2.5e+02 Score=27.39 Aligned_cols=153 Identities=21% Similarity=0.292 Sum_probs=72.2
Q ss_pred EEEeCCCeEEEEeCCCC-EEEeeCCCCCCcCCCCCCC--------ccceeeeeeeecCCC-eEEEEEecCceEEEEeCCC
Q 013365 180 MVAAGAEHSVAVAEDGE-LYGWGWGRYGNLGLGDRND--------RLIPEKVATVDLQRE-KMVMVACGWRHTISVSSSG 249 (444)
Q Consensus 180 ~ia~G~~h~~~Lt~~G~-vy~wG~n~~gqlG~~~~~~--------~~~p~~v~~~~~~~~-~i~~Ia~G~~hs~~lt~~G 249 (444)
.|.+|...-+++..+|+ +|+.. -.+-....+...+ ...|. ..+.+..+ +.. +.-+.+.+.|+.+|
T Consensus 32 mi~~g~~~~~~~spdgk~~y~a~-T~~sR~~rG~RtDvv~~~D~~TL~~~--~EI~iP~k~R~~--~~~~~~~~~ls~dg 106 (342)
T PF06433_consen 32 MIDTGFLGNVALSPDGKTIYVAE-TFYSRGTRGERTDVVEIWDTQTLSPT--GEIEIPPKPRAQ--VVPYKNMFALSADG 106 (342)
T ss_dssp EEEEESSEEEEE-TTSSEEEEEE-EEEEETTEEEEEEEEEEEETTTTEEE--EEEEETTS-B----BS--GGGEEE-TTS
T ss_pred EeecccCCceeECCCCCEEEEEE-EEEeccccccceeEEEEEecCcCccc--ceEecCCcchhe--ecccccceEEccCC
Confidence 57788888888988887 44322 1111222222211 11121 11222222 332 22356778898888
Q ss_pred C-EEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEE---------ecCCCceeEEeCCCcEEEeecCCCcccccCCC
Q 013365 250 R-LYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQI---------SGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDN 319 (444)
Q Consensus 250 ~-vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i---------~~G~~~~~~lt~~g~vy~wG~n~~gqlG~g~~ 319 (444)
+ +|++-- .+...-+.|..-..+.+..| -.|......+..||.+.....+..|+.-
T Consensus 107 k~~~V~N~-----------TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~---- 171 (342)
T PF06433_consen 107 KFLYVQNF-----------TPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA---- 171 (342)
T ss_dssp SEEEEEEE-----------SSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE----
T ss_pred cEEEEEcc-----------CCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe----
Confidence 7 666532 22222222222122222222 2344556677788888877776666542
Q ss_pred CCccCceEeccCCC-------cEEecCCeeEEEeCCCCEEEEe
Q 013365 320 VDHCSPVQVKFPLD-------QISCGWRHTLAVTERQNVFSWG 355 (444)
Q Consensus 320 ~~~~~p~~v~~~~~-------~i~~G~~h~~~l~~~g~v~~wG 355 (444)
.+...+-.+.. .......+.++++=+|+||.--
T Consensus 172 ---~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~d 211 (342)
T PF06433_consen 172 ---QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSAD 211 (342)
T ss_dssp ---EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEE
T ss_pred ---EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEe
Confidence 11112222111 2334556788899999999754
No 88
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=25.92 E-value=6.9e+02 Score=25.13 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=15.3
Q ss_pred CCceeEEeCCCcEEEeec
Q 013365 291 WRHTMAVTSDGKLYGWGW 308 (444)
Q Consensus 291 ~~~~~~lt~~g~vy~wG~ 308 (444)
..|.++++-+|.+|+||-
T Consensus 233 SGcq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 233 SGCQFSVTPQGGIVVYGG 250 (521)
T ss_pred CcceEEecCCCcEEEEcc
Confidence 468888898999999993
No 89
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=24.89 E-value=8.3e+02 Score=25.70 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=15.7
Q ss_pred EeCCceEEEEecCCeEEEE
Q 013365 130 ACGDSHCLAVTVEGEVQSW 148 (444)
Q Consensus 130 a~G~~h~~~lt~~G~vy~w 148 (444)
..-.+|+++-|+.|.||..
T Consensus 357 ~~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 357 PTDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred cCCCceEEEEcCCcEEEEE
Confidence 3456889999999999984
No 90
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=23.43 E-value=8e+02 Score=25.01 Aligned_cols=151 Identities=13% Similarity=0.218 Sum_probs=0.0
Q ss_pred cEEEEEecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCC-----CEEEEEeCCceEEEEecCCeEE
Q 013365 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSL-----RVKQIACGDSHCLAVTVEGEVQ 146 (444)
Q Consensus 72 ~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~-----~i~~Ia~G~~h~~~lt~~G~vy 146 (444)
.|.-+.-|..|.....+..=.||-|+ .|.+++..... +...+.-.....++-+.++.++
T Consensus 347 ~i~F~~~g~rFissSDdks~riWe~~----------------~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ 410 (503)
T KOG0282|consen 347 DITFVDEGRRFISSSDDKSVRIWENR----------------IPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIA 410 (503)
T ss_pred eeEEccCCceEeeeccCccEEEEEcC----------------CCccchhhcchhhccCcceecCCCCCeehhhccCceEE
Q ss_pred EEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeee
Q 013365 147 SWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVD 226 (444)
Q Consensus 147 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~ 226 (444)
++..+...++ .......-..+.... -=++.+-...+.+-=+.+|+||.|+++..-.+......+...-.-.-...
T Consensus 411 ifs~~~~~r~---nkkK~feGh~vaGys--~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 411 IFSTVPPFRL---NKKKRFEGHSVAGYS--CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV 485 (503)
T ss_pred EEeccccccc---CHhhhhcceeccCce--eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC
Q ss_pred cCCCeEEEEEecCceEEEEeCCCCEEEE
Q 013365 227 LQREKMVMVACGWRHTISVSSSGRLYSY 254 (444)
Q Consensus 227 ~~~~~i~~Ia~G~~hs~~lt~~G~vy~~ 254 (444)
+.=+-++||+ +|.|..|
T Consensus 486 ---e~Skvat~~w--------~G~Ikiw 502 (503)
T KOG0282|consen 486 ---EPSKVATCGW--------DGLIKIW 502 (503)
T ss_pred ---CcceeEeccc--------CceeEec
No 91
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=23.26 E-value=1e+03 Score=26.05 Aligned_cols=121 Identities=14% Similarity=0.162 Sum_probs=59.4
Q ss_pred eEEEEeCCCCEEEeeCCCCCCcCCC-------CCCC-ccceeeeeeeecCCCeEEEEEecCc-eEEEEeCCCCEEE----
Q 013365 187 HSVAVAEDGELYGWGWGRYGNLGLG-------DRND-RLIPEKVATVDLQREKMVMVACGWR-HTISVSSSGRLYS---- 253 (444)
Q Consensus 187 h~~~Lt~~G~vy~wG~n~~gqlG~~-------~~~~-~~~p~~v~~~~~~~~~i~~Ia~G~~-hs~~lt~~G~vy~---- 253 (444)
..++...++++|+|-.+...-+-.. .... .....++.........|.+|..... +.++|.-.-.|++
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP 113 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELP 113 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 4455556789999987664332211 0010 0111222111222346777766544 3344444444332
Q ss_pred --EeCCCCCcccCCCCCCceeeeeecccc---CCcEEEEe-----cCCCceeEEeCCCcEEEee
Q 013365 254 --YGWSKYGQLGHGDFKDHLVPCQLEALR---ESFISQIS-----GGWRHTMAVTSDGKLYGWG 307 (444)
Q Consensus 254 --~G~n~~gqLG~~~~~~~~~p~~v~~~~---~~~i~~i~-----~G~~~~~~lt~~g~vy~wG 307 (444)
||.+.+-+.|.........|.--..+. ...|.++. ..+.|-++||+|+.+-.+-
T Consensus 114 ~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~ 177 (717)
T PF10168_consen 114 RRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYD 177 (717)
T ss_pred cccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEe
Confidence 676654444444333344443332222 23466653 3478999999999755443
No 92
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=22.49 E-value=7.4e+02 Score=24.30 Aligned_cols=136 Identities=10% Similarity=0.004 Sum_probs=0.0
Q ss_pred CCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCccCCC
Q 013365 28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHG 107 (444)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~ 107 (444)
..+.++...+|.+++.-.....++-.........| ....+..++.+.+ |+||+.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~--------------~~~~~~vy~~~~~-g~l~al----------- 309 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDF--------------AVDGGRIYLVDQN-DRVYAL----------- 309 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCc--------------EEECCEEEEEcCC-CeEEEE-----------
Q ss_pred CCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCCCe
Q 013365 108 NSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEH 187 (444)
Q Consensus 108 ~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h 187 (444)
+..+-..--....+.+......+.-....++.+.+|.||+. +...-..--..+.....-...-.....+
T Consensus 310 d~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~l-----------d~~tG~~~~~~~~~~~~~~s~P~~~~~~ 378 (394)
T PRK11138 310 DTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWI-----------NREDGRFVAQQKVDSSGFLSEPVVADDK 378 (394)
T ss_pred ECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEE-----------ECCCCCEEEEEEcCCCcceeCCEEECCE
Q ss_pred EEEEeCCCCEEEe
Q 013365 188 SVAVAEDGELYGW 200 (444)
Q Consensus 188 ~~~Lt~~G~vy~w 200 (444)
.++.+++|+||++
T Consensus 379 l~v~t~~G~l~~~ 391 (394)
T PRK11138 379 LLIQARDGTVYAI 391 (394)
T ss_pred EEEEeCCceEEEE
No 93
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=21.15 E-value=1.3e+02 Score=22.54 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=25.0
Q ss_pred CcEEEEEeC-CCeEEEEeCCCCEEEeeCCCCCCc
Q 013365 176 VSIKMVAAG-AEHSVAVAEDGELYGWGWGRYGNL 208 (444)
Q Consensus 176 ~~i~~ia~G-~~h~~~Lt~~G~vy~wG~n~~gql 208 (444)
..=..|+|. ....++|++||.+|.-+--..|++
T Consensus 16 ~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 16 QTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp -SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred ccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 345679999 889999999999999886556654
No 94
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=20.70 E-value=2.6e+02 Score=27.02 Aligned_cols=57 Identities=19% Similarity=0.392 Sum_probs=38.0
Q ss_pred EEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCCCe--EEEEeCCCCEEEee
Q 013365 137 LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEH--SVAVAEDGELYGWG 201 (444)
Q Consensus 137 ~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h--~~~Lt~~G~vy~wG 201 (444)
++..+.|+||.|--... +....++......+..|.+.+...+- .++++++|.||-|-
T Consensus 323 a~gnq~g~v~vwdL~~~--------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNN--------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred hhccCCCcEEEEECCCC--------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 45567899999974221 12244555556667778888776554 45667899999885
Done!