Query 013365
Match_columns 444
No_of_seqs 483 out of 2330
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 09:13:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 1.1E-81 3.7E-86 628.7 46.1 394 12-407 9-406 (406)
2 3kci_A Probable E3 ubiquitin-p 100.0 1.7E-72 5.8E-77 559.4 33.5 365 23-392 5-377 (389)
3 3mvd_K Regulator of chromosome 100.0 1.7E-70 6E-75 551.3 37.7 369 12-392 17-408 (423)
4 1a12_A RCC1, regulator of chro 100.0 6.4E-70 2.2E-74 545.3 36.8 363 23-392 12-399 (413)
5 3of7_A Regulator of chromosome 100.0 6.5E-69 2.2E-73 546.5 32.7 372 15-392 6-440 (473)
6 3kci_A Probable E3 ubiquitin-p 100.0 5.4E-67 1.9E-71 519.8 35.7 329 18-349 52-388 (389)
7 4d9s_A UVB-resistance protein 100.0 3.1E-64 1.1E-68 502.6 41.1 335 71-410 16-359 (406)
8 1a12_A RCC1, regulator of chro 100.0 5.8E-64 2E-68 502.2 37.8 334 11-351 51-412 (413)
9 3mvd_K Regulator of chromosome 100.0 2.9E-62 9.8E-67 491.6 42.2 329 11-350 67-420 (423)
10 3of7_A Regulator of chromosome 100.0 1.8E-61 6E-66 491.9 38.6 323 17-347 65-449 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 7.7E-53 2.6E-57 398.8 28.7 261 11-352 16-276 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 1.3E-51 4.5E-56 390.4 29.2 251 38-364 2-252 (282)
13 1p22_A F-BOX/WD-repeat protein 97.4 0.13 4.4E-06 50.2 35.0 278 18-358 133-414 (435)
14 2ovr_B FBW7, F-BOX/WD repeat p 96.6 0.59 2E-05 45.4 35.6 267 21-357 122-390 (445)
15 4gbf_A Phikz131; 7-bladed beta 96.1 0.01 3.5E-07 52.6 6.4 72 176-262 309-380 (400)
16 4gbf_A Phikz131; 7-bladed beta 95.8 0.014 4.9E-07 51.7 6.2 72 230-314 309-380 (400)
17 1p22_A F-BOX/WD-repeat protein 95.8 1.5 5.2E-05 42.4 30.7 229 72-356 135-363 (435)
18 2ovr_B FBW7, F-BOX/WD repeat p 95.7 1.7 5.6E-05 42.2 32.7 229 17-309 158-390 (445)
19 2zwa_A Leucine carboxyl methyl 95.5 2.3 7.7E-05 44.5 23.1 18 239-256 598-615 (695)
20 2zwa_A Leucine carboxyl methyl 95.3 3.3 0.00011 43.2 25.7 104 133-256 441-558 (695)
21 1k3i_A Galactose oxidase precu 95.0 3.9 0.00013 42.2 29.3 69 291-360 457-533 (656)
22 4aez_A CDC20, WD repeat-contai 94.0 4.3 0.00015 38.5 31.1 145 24-203 99-247 (401)
23 1k3i_A Galactose oxidase precu 93.5 7.8 0.00027 39.9 28.3 72 240-313 458-534 (656)
24 3k26_A Polycomb protein EED; W 93.4 4.8 0.00016 37.0 27.7 209 18-258 18-260 (366)
25 1gxr_A ESG1, transducin-like e 93.3 4.5 0.00015 36.7 33.9 273 25-357 8-295 (337)
26 3no0_A DNA gyrase subunit A; D 92.9 5.3 0.00018 36.4 21.9 217 17-263 22-251 (276)
27 3v7d_B Cell division control p 92.9 7.1 0.00024 37.6 34.5 237 21-310 125-381 (464)
28 1sq9_A Antiviral protein SKI8; 89.6 13 0.00045 34.6 21.4 109 123-256 186-320 (397)
29 3no0_A DNA gyrase subunit A; D 88.3 15 0.0005 33.4 21.0 203 79-311 34-247 (276)
30 3k26_A Polycomb protein EED; W 87.9 16 0.00054 33.4 28.4 260 18-308 69-364 (366)
31 3sfz_A APAF-1, apoptotic pepti 87.5 38 0.0013 37.3 26.5 230 73-356 1006-1247(1249)
32 1gxr_A ESG1, transducin-like e 86.5 18 0.00061 32.5 29.9 225 17-307 96-334 (337)
33 3mmy_A MRNA export factor; mRN 85.3 22 0.00074 32.3 28.1 192 71-310 40-247 (368)
34 3odt_A Protein DOA1; ubiquitin 85.3 19 0.00067 31.8 30.5 186 71-310 105-296 (313)
35 1q7f_A NHL, brain tumor CG1071 84.2 22 0.00074 31.5 24.8 17 241-257 210-226 (286)
36 3uc1_A DNA gyrase subunit A; D 84.1 27 0.00092 32.5 21.5 219 130-365 50-286 (327)
37 3jrp_A Fusion protein of prote 83.7 26 0.00089 32.0 30.1 240 18-309 11-286 (379)
38 3zwl_B Eukaryotic translation 82.5 28 0.00097 31.5 30.2 200 18-256 32-247 (369)
39 1sq9_A Antiviral protein SKI8; 81.9 32 0.0011 31.8 28.9 249 17-310 15-322 (397)
40 3ii7_A Kelch-like protein 7; p 81.7 29 0.001 31.2 14.6 17 291-308 192-208 (306)
41 1r5m_A SIR4-interacting protei 81.0 35 0.0012 31.6 24.5 106 125-256 249-359 (425)
42 3v7d_B Cell division control p 79.5 44 0.0015 31.8 34.6 242 18-310 162-421 (464)
43 2uvk_A YJHT; unknown function, 79.4 18 0.00063 33.5 12.0 17 133-150 110-126 (357)
44 3p6j_A De novo designed beta-t 77.0 27 0.00093 28.1 10.9 109 123-254 29-139 (142)
45 2qc5_A Streptogramin B lactona 76.1 40 0.0014 29.5 25.3 17 340-356 274-290 (300)
46 3odt_A Protein DOA1; ubiquitin 75.5 42 0.0014 29.5 33.2 266 17-357 17-295 (313)
47 3uc1_A DNA gyrase subunit A; D 75.3 52 0.0018 30.5 24.5 220 25-263 50-284 (327)
48 4aez_A CDC20, WD repeat-contai 75.2 54 0.0018 30.6 30.4 148 73-257 96-247 (401)
49 1suu_A DNA gyrase subunit A; t 73.5 56 0.0019 30.0 21.8 175 76-264 54-237 (312)
50 2z2n_A Virginiamycin B lyase; 73.2 47 0.0016 29.0 24.3 16 241-256 186-201 (299)
51 3jro_A Fusion protein of prote 72.8 93 0.0032 32.3 29.3 243 18-310 9-285 (753)
52 1rwi_B Serine/threonine-protei 72.8 46 0.0016 28.7 14.6 15 187-201 70-84 (270)
53 4g56_B MGC81050 protein; prote 71.5 63 0.0022 29.8 31.7 191 72-308 96-299 (357)
54 2xyi_A Probable histone-bindin 71.4 70 0.0024 30.3 22.8 201 30-256 196-408 (430)
55 1q7f_A NHL, brain tumor CG1071 71.0 54 0.0018 28.7 19.7 14 188-201 211-224 (286)
56 3no2_A Uncharacterized protein 70.4 59 0.002 28.9 28.8 245 18-315 4-266 (276)
57 2xyi_A Probable histone-bindin 70.4 74 0.0025 30.1 25.2 210 72-309 183-409 (430)
58 2xn4_A Kelch-like protein 2; s 69.9 32 0.0011 30.8 10.7 16 29-45 54-69 (302)
59 3vl1_A 26S proteasome regulato 68.4 76 0.0026 29.5 31.8 141 23-202 63-210 (420)
60 2vpj_A Kelch-like protein 12; 67.4 68 0.0023 28.5 14.2 16 134-150 152-167 (301)
61 4asc_A Kelch repeat and BTB do 66.6 61 0.0021 29.2 12.0 18 239-257 140-157 (315)
62 1pgu_A Actin interacting prote 66.1 1E+02 0.0036 30.2 31.0 186 72-309 162-365 (615)
63 3no2_A Uncharacterized protein 66.0 72 0.0025 28.3 25.5 76 173-256 85-163 (276)
64 2vpj_A Kelch-like protein 12; 65.8 73 0.0025 28.3 14.1 17 134-151 105-121 (301)
65 3vgz_A Uncharacterized protein 65.6 76 0.0026 28.5 27.6 16 341-356 317-333 (353)
66 2xn4_A Kelch-like protein 2; s 65.4 75 0.0026 28.3 13.1 60 185-256 100-163 (302)
67 4gqb_B Methylosome protein 50; 63.6 91 0.0031 28.6 31.3 191 72-308 84-287 (344)
68 1r5m_A SIR4-interacting protei 63.1 93 0.0032 28.6 28.8 237 20-309 110-360 (425)
69 1zgk_A Kelch-like ECH-associat 62.5 52 0.0018 29.6 10.6 17 291-308 207-223 (308)
70 4asc_A Kelch repeat and BTB do 61.8 60 0.002 29.3 10.9 18 291-309 140-157 (315)
71 3gre_A Serine/threonine-protei 60.6 1.1E+02 0.0038 28.6 18.1 111 18-152 168-292 (437)
72 2pm9_A Protein WEB1, protein t 60.3 1.1E+02 0.0036 28.3 19.3 180 27-254 125-333 (416)
73 1yfq_A Cell cycle arrest prote 59.8 95 0.0033 27.6 25.9 204 72-311 13-226 (342)
74 1yfq_A Cell cycle arrest prote 58.7 99 0.0034 27.5 25.7 253 16-309 9-281 (342)
75 1pgu_A Actin interacting prote 58.6 1.4E+02 0.0048 29.2 32.3 188 18-256 160-364 (615)
76 4g56_B MGC81050 protein; prote 58.4 1.1E+02 0.0038 28.0 29.9 190 72-312 141-345 (357)
77 4a11_B DNA excision repair pro 57.9 1.1E+02 0.0038 27.8 34.8 298 17-359 42-366 (408)
78 4a11_B DNA excision repair pro 57.7 1.1E+02 0.0039 27.8 27.6 251 17-312 98-367 (408)
79 3jrp_A Fusion protein of prote 55.4 1.2E+02 0.004 27.3 30.4 196 72-310 13-240 (379)
80 1zi0_A DNA gyrase subunit A; b 55.1 1.2E+02 0.0042 27.5 25.0 217 24-259 49-278 (307)
81 2woz_A Kelch repeat and BTB do 54.1 87 0.003 28.2 10.6 17 291-308 150-166 (318)
82 3ii7_A Kelch-like protein 7; p 53.8 1.2E+02 0.0041 26.9 17.3 17 185-202 192-208 (306)
83 3mmy_A MRNA export factor; mRN 53.6 1.2E+02 0.0042 27.0 25.6 151 16-203 37-198 (368)
84 1wp5_A Topoisomerase IV; broke 51.5 1.5E+02 0.005 27.3 24.2 222 76-312 46-279 (323)
85 3fvz_A Peptidyl-glycine alpha- 51.2 1.4E+02 0.0047 26.9 18.0 17 240-256 294-310 (329)
86 3mkq_A Coatomer beta'-subunit; 50.9 2.2E+02 0.0075 29.1 28.0 190 19-257 56-258 (814)
87 1xip_A Nucleoporin NUP159; bet 50.4 1.7E+02 0.0058 27.7 14.1 109 60-200 79-187 (388)
88 3i2n_A WD repeat-containing pr 50.0 1.4E+02 0.0048 26.6 29.0 237 18-309 18-290 (357)
89 2woz_A Kelch repeat and BTB do 49.8 1.4E+02 0.0049 26.6 12.5 62 185-256 101-166 (318)
90 3i2n_A WD repeat-containing pr 49.6 1.4E+02 0.0048 26.5 29.3 199 18-257 65-290 (357)
91 3mkq_A Coatomer beta'-subunit; 47.7 2.5E+02 0.0084 28.8 31.4 231 19-310 14-259 (814)
92 2aq5_A Coronin-1A; WD40 repeat 47.2 1.7E+02 0.006 26.9 28.4 151 76-256 40-205 (402)
93 3jro_A Fusion protein of prote 45.6 2.7E+02 0.0092 28.6 28.1 241 72-358 11-285 (753)
94 1suu_A DNA gyrase subunit A; t 43.9 1.9E+02 0.0064 26.3 26.6 218 80-315 8-236 (312)
95 2aq5_A Coronin-1A; WD40 repeat 43.0 2E+02 0.0069 26.4 29.1 152 24-202 40-205 (402)
96 2uvk_A YJHT; unknown function, 42.9 58 0.002 29.9 7.5 17 239-256 110-126 (357)
97 4gga_A P55CDC, cell division c 42.4 2.1E+02 0.0073 26.5 31.0 139 28-202 115-259 (420)
98 3zwl_B Eukaryotic translation 42.0 1.9E+02 0.0064 25.7 23.4 67 72-150 177-247 (369)
99 3q7x_A De novo designed beta-t 41.3 1.3E+02 0.0044 23.6 10.6 105 126-254 8-114 (132)
100 3l6v_A GYRA, DNA gyrase subuni 40.6 2.4E+02 0.008 26.5 24.2 122 76-205 53-181 (370)
101 4gqb_B Methylosome protein 50; 39.5 2.2E+02 0.0075 25.9 30.3 229 19-308 83-329 (344)
102 1xip_A Nucleoporin NUP159; bet 36.2 2.8E+02 0.0096 26.1 14.7 99 20-148 89-187 (388)
103 3fvz_A Peptidyl-glycine alpha- 35.8 2.4E+02 0.0082 25.2 21.4 17 134-150 93-109 (329)
104 1zvt_A Topoisomerase IV subuni 32.4 2.6E+02 0.0089 24.6 16.7 158 82-263 4-168 (256)
105 2qc5_A Streptogramin B lactona 32.1 2.4E+02 0.0083 24.1 22.1 17 240-256 106-122 (300)
106 1wp5_A Topoisomerase IV; broke 29.4 3.3E+02 0.011 24.8 24.2 223 24-263 46-282 (323)
107 1zvt_A Topoisomerase IV subuni 29.3 2.9E+02 0.01 24.2 16.5 123 76-209 40-168 (256)
108 2z2n_A Virginiamycin B lyase; 29.1 2.7E+02 0.0093 23.8 25.2 17 240-256 143-159 (299)
109 3c75_H MADH, methylamine dehyd 28.4 4E+02 0.014 25.4 12.7 76 71-149 110-195 (426)
110 1zvu_A Topoisomerase IV subuni 26.5 5E+02 0.017 26.8 11.4 123 76-208 510-637 (716)
111 4aow_A Guanine nucleotide-bind 26.1 3.3E+02 0.011 23.7 26.2 236 22-306 92-333 (340)
112 1zvu_A Topoisomerase IV subuni 25.4 5.7E+02 0.02 26.3 12.1 123 130-263 511-638 (716)
113 3sjl_D Methylamine dehydrogena 24.9 4.4E+02 0.015 24.8 16.8 131 73-208 72-212 (386)
114 1zi0_A DNA gyrase subunit A; b 23.4 4.1E+02 0.014 23.9 24.1 215 76-309 49-276 (307)
115 3vl1_A 26S proteasome regulato 23.3 4.2E+02 0.014 24.0 33.9 226 28-310 109-365 (420)
116 3hrp_A Uncharacterized protein 22.0 4.9E+02 0.017 24.3 25.6 15 241-255 326-340 (409)
117 1jmx_B Amine dehydrogenase; ox 21.9 4E+02 0.014 23.3 19.0 10 35-44 18-27 (349)
118 3l6v_A GYRA, DNA gyrase subuni 21.9 4.9E+02 0.017 24.3 25.2 127 24-158 53-186 (370)
119 2dg1_A DRP35, lactonase; beta 21.7 4.1E+02 0.014 23.3 13.2 18 240-257 89-106 (333)
120 3sjl_D Methylamine dehydrogena 21.4 5.1E+02 0.017 24.3 15.4 168 126-307 72-253 (386)
121 1rwi_B Serine/threonine-protei 21.1 3.7E+02 0.013 22.6 25.1 16 241-256 195-210 (270)
122 3sfz_A APAF-1, apoptotic pepti 20.9 8.1E+02 0.028 26.5 28.9 147 19-202 616-772 (1249)
123 4ery_A WD repeat-containing pr 20.3 4.2E+02 0.014 22.9 28.3 187 19-256 24-221 (312)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.1e-81 Score=628.75 Aligned_cols=394 Identities=83% Similarity=1.407 Sum_probs=362.5
Q ss_pred ccCCCCCCCEEEEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCCeeEEEEcCCC
Q 013365 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCM 91 (444)
Q Consensus 12 ~~~~~~~~~i~~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g 91 (444)
++..+++.+|++|+||..|+++|+++|+||+||+|.+||||.+..++...|+++..+.+.+|++|+||.+|+++|+++.+
T Consensus 9 ~~v~~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg 88 (406)
T 4d9s_A 9 DEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGM 88 (406)
T ss_dssp ------CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTT
T ss_pred ccCCCCccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCC
Confidence 45666788999999999999999999999999999999999999999999999999988899999999999999999834
Q ss_pred EEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeee
Q 013365 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (444)
Q Consensus 92 ~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 171 (444)
+||+||.|.+||||.++..+...|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++.
T Consensus 89 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 89 EVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceEEEEeCCCCE
Q 013365 172 AFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRL 251 (444)
Q Consensus 172 ~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~v 251 (444)
.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+. ..+|++|+||.+|+++|+++|+|
T Consensus 169 ~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~--~~~i~~va~G~~ht~~l~~~G~v 246 (406)
T 4d9s_A 169 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWRHTISVSYSGAL 246 (406)
T ss_dssp GGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCST--TCCEEEEEECSSEEEEEETTCCE
T ss_pred ccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccC--CceEEEEEECCCcEEEEcCCCCE
Confidence 9999999999999999999999999999999999999999988888898886554 67899999999999999999999
Q ss_pred EEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecCCCcccccCCCCCccCceEeccC
Q 013365 252 YSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFP 331 (444)
Q Consensus 252 y~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~g~~~~~~~p~~v~~~ 331 (444)
|+||.|.+||||.++......|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++..+...|+++..+
T Consensus 247 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 326 (406)
T 4d9s_A 247 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP 326 (406)
T ss_dssp EEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCG
T ss_pred EEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888899988754
Q ss_pred C----CcEEecCCeeEEEeCCCCEEEEeCCCCCCCCCCCCCCCCCCeEeeccccCCCceeEeecccccCCCCccccCCCc
Q 013365 332 L----DQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSE 407 (444)
Q Consensus 332 ~----~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (444)
. .+|+||.+|++||+++|+||+||+|++||||+|+..++..|+.|+.|..++....+++++......++.|++++|
T Consensus 327 ~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~g~~~~~~~~~~~~~~~~~~w~~~~~ 406 (406)
T 4d9s_A 327 DDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQHIESSNIDPSSGKSWVSPAE 406 (406)
T ss_dssp GGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGCSCSSCCCCCBCTTSCTTC---------
T ss_pred CCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeeecCCCceeeEEEecccccccCccccCcCC
Confidence 3 389999999999999999999999999999999999999999999999999999999999899988999998865
No 2
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-72 Score=559.40 Aligned_cols=365 Identities=30% Similarity=0.575 Sum_probs=323.4
Q ss_pred EEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCC
Q 013365 23 LISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFG 102 (444)
Q Consensus 23 ~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~g 102 (444)
++..-..++++|++||+||+||+|.+||||.++.+....|+++..+...++++|+||..|+++|+++ |+||+||.|.+|
T Consensus 5 ~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~-G~v~~wG~n~~G 83 (389)
T 3kci_A 5 HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTAD-GKLYATGYGAGG 83 (389)
T ss_dssp ----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETT-SCEEEEECCGGG
T ss_pred ccccCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCC-CcEEEEECCCCC
Confidence 3444567889999999999999999999999888888899999888878899999999999999999 999999999999
Q ss_pred ccCCCCCCCceeeeeecccCCCC--EEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEE
Q 013365 103 RLGHGNSSDLFTPLPIKALHSLR--VKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM 180 (444)
Q Consensus 103 qlG~~~~~~~~~p~~v~~~~~~~--i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ 180 (444)
|||.+.......|.++..+.+.. +++|+||.+|+++|+++|+||+||.|.+||||.+.......|..+..+.+.+|++
T Consensus 84 qLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ 163 (389)
T 3kci_A 84 RLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVD 163 (389)
T ss_dssp TTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEE
T ss_pred CCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEE
Confidence 99999998889999999887764 4788999999999999999999999999999999998889999999999999999
Q ss_pred EEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecC--ceEEEEeCCCCEEEEeCCC
Q 013365 181 VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RHTISVSSSGRLYSYGWSK 258 (444)
Q Consensus 181 ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~--~hs~~lt~~G~vy~~G~n~ 258 (444)
|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+. ..+|++|+||. .|+++|+++|+||+||.|.
T Consensus 164 va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~--~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~ 241 (389)
T 3kci_A 164 VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ--GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241 (389)
T ss_dssp EEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT--TSCEEEEEECCSSCEEEEEETTTEEEEEECCG
T ss_pred EEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC--CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCC
Confidence 9999999999999999999999999999999988888888886654 77899999995 8999999999999999999
Q ss_pred CCcccCCCCCCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecCCCcccccCCCCCccCceEeccCC----Cc
Q 013365 259 YGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL----DQ 334 (444)
Q Consensus 259 ~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~g~~~~~~~p~~v~~~~----~~ 334 (444)
+||||.+.......|.+++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++......|.++..+. .+
T Consensus 242 ~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ 321 (389)
T 3kci_A 242 YGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIA 321 (389)
T ss_dssp GGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEE
T ss_pred CCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEE
Confidence 99999999888999999999998899999999999999999999999999999999999988888999987543 38
Q ss_pred EEecCCeeEEEeCCCCEEEEeCCCCCCCCCCCCCCCCCCeEeeccccCCCceeEeecc
Q 013365 335 ISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASS 392 (444)
Q Consensus 335 i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~l~~~~~~~~~~~~~ 392 (444)
|+||.+|+++++++|+||+||.|++||||+|+..++..|+.|..|. +....+++++
T Consensus 322 ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~--~~~v~~va~G 377 (389)
T 3kci_A 322 IATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQ--GKKVNRVACG 377 (389)
T ss_dssp EEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGT--TSCCCEEEEE
T ss_pred EEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccC--CCCEEEEEec
Confidence 9999999999999999999999999999999999999999998774 4445555444
No 3
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.7e-70 Score=551.35 Aligned_cols=369 Identities=27% Similarity=0.409 Sum_probs=310.9
Q ss_pred ccCCCCCCCEEEEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCC-CCCcCCeeeccCCCCcEEEEEecCCeeEEEEcCC
Q 013365 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDA-EDRLSPTQLSALDGHEIVSVTCGADHTTAYSESC 90 (444)
Q Consensus 12 ~~~~~~~~~i~~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~-~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~ 90 (444)
..+.++..++.+|++|..|+++|+++|+||+||.|.+||||.+.. .....|++++.+. .|++|+||..|+++|+++
T Consensus 17 ~~~~~~~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~- 93 (423)
T 3mvd_K 17 AEQQPPKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKS- 93 (423)
T ss_dssp ------------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETT-
T ss_pred CCCCCccceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC--CceEEeeCCCeEEEEeCC-
Confidence 446778889999999999999999999999999999999999865 4567888888876 589999999999999999
Q ss_pred CEEEEEeCCCCCccCCCCCCC--ceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEEC--CCCCccCCCCCCCccc
Q 013365 91 MQVYSWGWGDFGRLGHGNSSD--LFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGR--NQNGQLGLGTTEDSLV 166 (444)
Q Consensus 91 g~v~~wG~n~~gqlG~~~~~~--~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~~~ 166 (444)
|+||+||.|.+||||.+.... ...|.++.. ..+|++|+||.+|+++|+++|+||+||. |.+||||.+.......
T Consensus 94 G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~--~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~ 171 (423)
T 3mvd_K 94 GDIYSFGCNDEGALGRDTSEDGSESKPDLIDL--PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRT 171 (423)
T ss_dssp SCEEEEECCSSSTTCSCCCSTTSSSSCEECCC--SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEE
T ss_pred CeEEEeECCCCcCCCCCCcCCccccCCeEEcC--CCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCce
Confidence 999999999999999988754 456776664 3489999999999999999999999998 9999999988777655
Q ss_pred ceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCC-----------CccceeeeeeeecCCCeEEEE
Q 013365 167 PQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRN-----------DRLIPEKVATVDLQREKMVMV 235 (444)
Q Consensus 167 p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~-----------~~~~p~~v~~~~~~~~~i~~I 235 (444)
|..+ +...+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++.... ..+|++|
T Consensus 172 p~~~--~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~--~~~v~~i 247 (423)
T 3mvd_K 172 PIDL--MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITR--AKPFEAI 247 (423)
T ss_dssp EEES--STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTT--CCCEEEE
T ss_pred eeEe--cCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecC--CccEEEE
Confidence 5554 567789999999999999999999999999999999987642 345677765433 5689999
Q ss_pred EecCceEEEE-eCCCCEEEEeCCCCCcccCCCCCC--ceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecCCCc
Q 013365 236 ACGWRHTISV-SSSGRLYSYGWSKYGQLGHGDFKD--HLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFG 312 (444)
Q Consensus 236 a~G~~hs~~l-t~~G~vy~~G~n~~gqLG~~~~~~--~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~g 312 (444)
+||.+|++++ +++|+||+||.|.+||||.+.... ...|.++. + .+|++|+||.+|+++|+++|+||+||.|.+|
T Consensus 248 ~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-~--~~v~~ia~G~~ht~alt~~G~v~~wG~n~~G 324 (423)
T 3mvd_K 248 WATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE-L--KDIRHIAGGQHHTVILTTDLKCSVVGRPEYG 324 (423)
T ss_dssp EEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC-C--CSEEEEEECSSEEEEEETTCCEEEEECCGGG
T ss_pred EECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC-C--CCeEEEEcccCeEEEEeCCCcEEEEECCCCC
Confidence 9999999999 699999999999999999965433 44566554 3 4599999999999999999999999999999
Q ss_pred ccccCCCCC-ccCceEeccCC---CcEEecCCeeEEEeCCCCEEEEeCCCCCCCCCCCCCCCCCCeEeeccccCCCceeE
Q 013365 313 QVGVGDNVD-HCSPVQVKFPL---DQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQN 388 (444)
Q Consensus 313 qlG~g~~~~-~~~p~~v~~~~---~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~l~~~~~~~~~ 388 (444)
|||.++..+ ...|.+++.+. .+|+||.+|++||+++|+||+||.|++||||+|+..++..|+.|..+.+.+....+
T Consensus 325 qLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~~~v~~ 404 (423)
T 3mvd_K 325 RLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLL 404 (423)
T ss_dssp TTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCSTTTTTCCEEE
T ss_pred CCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEEeCcccCCCEEEE
Confidence 999998766 36788877543 38999999999999999999999999999999999999999999976667777777
Q ss_pred eecc
Q 013365 389 IASS 392 (444)
Q Consensus 389 ~~~~ 392 (444)
++++
T Consensus 405 va~G 408 (423)
T 3mvd_K 405 ASGG 408 (423)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7655
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=6.4e-70 Score=545.35 Aligned_cols=363 Identities=32% Similarity=0.509 Sum_probs=312.6
Q ss_pred EEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCC-CcCCeeeccCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCC
Q 013365 23 LISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED-RLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDF 101 (444)
Q Consensus 23 ~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~-~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~ 101 (444)
+.+.+..|+++|+++|+||+||.|.+||||++.... ...|+++..+ .+|++|+||..|+++|+++ |+||+||.|.+
T Consensus 12 ~~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~-G~v~~wG~n~~ 88 (413)
T 1a12_A 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKS-GQVYSFGCNDE 88 (413)
T ss_dssp -CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETT-SCEEEEECCTT
T ss_pred hhhhccccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCC-CCEEEEECCCC
Confidence 667778999999999999999999999999998654 6788888755 5799999999999999999 99999999999
Q ss_pred CccCCCCCC--CceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEEC--CCCCccCCCCCCCc-ccceeeecccCC
Q 013365 102 GRLGHGNSS--DLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGR--NQNGQLGLGTTEDS-LVPQKLQAFEGV 176 (444)
Q Consensus 102 gqlG~~~~~--~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~-~~p~~v~~~~~~ 176 (444)
||||.+... ....|.++.. ..+|++|+||.+|+++|+++|+||+||. |.+||||.+..... ..|.++ +...
T Consensus 89 GqLG~~~~~~~~~~~P~~v~l--~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~ 164 (413)
T 1a12_A 89 GALGRDTSVEGSEMVPGKVEL--QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDV 164 (413)
T ss_dssp STTCSCCCSTTGGGSCEECCC--CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSS
T ss_pred CCCCCCCCCCccccCCeEecC--CCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCC
Confidence 999998763 3556777743 3489999999999999999999999998 99999998876543 347776 4566
Q ss_pred cEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCC-----------ccceeeeeeeec---CCCeEEEEEecCceE
Q 013365 177 SIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND-----------RLIPEKVATVDL---QREKMVMVACGWRHT 242 (444)
Q Consensus 177 ~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~-----------~~~p~~v~~~~~---~~~~i~~Ia~G~~hs 242 (444)
+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|..+..... ...+|++|+||.+|+
T Consensus 165 ~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs 244 (413)
T 1a12_A 165 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFT 244 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEE
T ss_pred CEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEE
Confidence 899999999999999999999999999999999875421 245654433211 246899999999999
Q ss_pred EEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccC--CcEEEEecCCCceeEEeCCCcEEEeecCCCcccccC-CC
Q 013365 243 ISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRE--SFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVG-DN 319 (444)
Q Consensus 243 ~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~--~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~g-~~ 319 (444)
++|+++|+||+||.|.+||||.+.......|.++..+.+ .+|++|+||.+|+++|+++|+||+||.|.+||||.+ +.
T Consensus 245 ~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~ 324 (413)
T 1a12_A 245 FAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGA 324 (413)
T ss_dssp EEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTC
T ss_pred EEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCC
Confidence 999999999999999999999999888899999998877 679999999999999999999999999999999998 45
Q ss_pred CCccCceEeccCC--CcEEecCCeeEEEeCCCCEEEEeCCCCCCCCCCCCCCCCCCeEeeccccCCCceeEeecc
Q 013365 320 VDHCSPVQVKFPL--DQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASS 392 (444)
Q Consensus 320 ~~~~~p~~v~~~~--~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~l~~~~~~~~~~~~~ 392 (444)
.....|++++.+. .+|+||.+|+++|+++|+||+||.|++||||+|+..+...|++|....+.+....+++++
T Consensus 325 ~~~~~P~~v~~l~~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G 399 (413)
T 1a12_A 325 EEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSG 399 (413)
T ss_dssp CCEEEEEECCSSSSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEEC
T ss_pred ccccCCEEecccCceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEccccccCCCeEEEEeeC
Confidence 5667888886543 499999999999999999999999999999999998889999998654455556666554
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-69 Score=546.55 Aligned_cols=372 Identities=25% Similarity=0.418 Sum_probs=318.6
Q ss_pred CCCCCCEEEEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCC---CCCcCCeeeccC--CCCcEEEEEecCCeeEEEEcC
Q 013365 15 AAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDA---EDRLSPTQLSAL--DGHEIVSVTCGADHTTAYSES 89 (444)
Q Consensus 15 ~~~~~~i~~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~---~~~~~P~~v~~~--~~~~i~~i~~G~~~~~~l~~~ 89 (444)
-.|...|....+...|+++++++|+||+||.|.+||||.+.. .....|++++.+ ...+|++|+||..|+++|+++
T Consensus 6 ~~~~~~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~ 85 (473)
T 3of7_A 6 HHHMSHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEE 85 (473)
T ss_dssp ---CTTCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETT
T ss_pred chhhhhhhhhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecC
Confidence 356778888899999999999999999999999999999984 346678888776 456899999999999999999
Q ss_pred CCEEEEEeCCCCCccCCCCCCC-----------------------ceeeeeecc--c----CCCCEEEEEeCCceEEEEe
Q 013365 90 CMQVYSWGWGDFGRLGHGNSSD-----------------------LFTPLPIKA--L----HSLRVKQIACGDSHCLAVT 140 (444)
Q Consensus 90 ~g~v~~wG~n~~gqlG~~~~~~-----------------------~~~p~~v~~--~----~~~~i~~Ia~G~~h~~~lt 140 (444)
|+||+||.|++||||.+.... ...|.++.. + .+.+|++|+||.+|+++|+
T Consensus 86 -G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt 164 (473)
T 3of7_A 86 -SNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALF 164 (473)
T ss_dssp -CCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEE
T ss_pred -CeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEe
Confidence 999999999999999987654 456777764 4 3679999999999999999
Q ss_pred cCCeEEEEEC--CCCCccCCCCC--CCcccceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCC-
Q 013365 141 VEGEVQSWGR--NQNGQLGLGTT--EDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND- 215 (444)
Q Consensus 141 ~~G~vy~wG~--n~~gqlG~~~~--~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~- 215 (444)
++|+||+||. |..||||.+.. .....|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+....
T Consensus 165 ~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~ 244 (473)
T 3of7_A 165 SNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERF 244 (473)
T ss_dssp TTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGG
T ss_pred CCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccc
Confidence 9999999998 67899998544 356678899888888999999999999999999999999999999999886543
Q ss_pred ---ccceeeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcccCCCCC----CceeeeeeccccCCcEEEEe
Q 013365 216 ---RLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFK----DHLVPCQLEALRESFISQIS 288 (444)
Q Consensus 216 ---~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~----~~~~p~~v~~~~~~~i~~i~ 288 (444)
...|.++. ..+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|+++..+.+.+|++|+
T Consensus 245 ~~~~~~p~~~~-----~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia 319 (473)
T 3of7_A 245 RLKTLDPRPFG-----LRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIA 319 (473)
T ss_dssp TTTTCSCEECS-----CCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEE
T ss_pred cccccCceecC-----CcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEE
Confidence 34555542 2589999999999999999999999999999999998754 34679999988888899999
Q ss_pred cCCCceeEEeCCCcEEEeecCCCcccccCCCC--------------CccCceEeccC--CCcEEecCCeeEEEeCCCCEE
Q 013365 289 GGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNV--------------DHCSPVQVKFP--LDQISCGWRHTLAVTERQNVF 352 (444)
Q Consensus 289 ~G~~~~~~lt~~g~vy~wG~n~~gqlG~g~~~--------------~~~~p~~v~~~--~~~i~~G~~h~~~l~~~g~v~ 352 (444)
||.+|+++|+++|+||+||.|.+||||.+... ....|++++.. +.+|+||.+|++||+++|+||
T Consensus 320 ~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~Ia~G~~hs~al~~~G~vy 399 (473)
T 3of7_A 320 AGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAY 399 (473)
T ss_dssp ECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEEEECSSEEEEEETTSCEE
T ss_pred eCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCceEEEEeCCCeEEEEeCCCcEE
Confidence 99999999999999999999999999986531 12456666542 349999999999999999999
Q ss_pred EEeCCCCCCCCCCC-CCCCCCCeEeeccccCCCceeEeecc
Q 013365 353 SWGRGTNGQLGHGE-SSDRNSPKIIEPLSLDGSKGQNIASS 392 (444)
Q Consensus 353 ~wG~n~~gqLG~g~-~~~~~~P~~i~~l~~~~~~~~~~~~~ 392 (444)
+||.|++||||+|+ ..+...|++|..+...+.....++++
T Consensus 400 ~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG 440 (473)
T 3of7_A 400 SWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCG 440 (473)
T ss_dssp EEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEEC
T ss_pred EeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeC
Confidence 99999999999999 78889999999776666666666555
No 6
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=5.4e-67 Score=519.82 Aligned_cols=329 Identities=31% Similarity=0.569 Sum_probs=308.0
Q ss_pred CCCEEEEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCc--EEEEEecCCeeEEEEcCCCEEEE
Q 013365 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHE--IVSVTCGADHTTAYSESCMQVYS 95 (444)
Q Consensus 18 ~~~i~~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~--i~~i~~G~~~~~~l~~~~g~v~~ 95 (444)
..+|++|+||..|+++|+++|+||+||.|.+||||.+..+....|++++.+.+.. +++|+||.+|+++|+++ |+||+
T Consensus 52 ~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~-G~v~~ 130 (389)
T 3kci_A 52 TLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE-GEVYS 130 (389)
T ss_dssp HTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETT-SCEEE
T ss_pred CCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCC-CCEEE
Confidence 3589999999999999999999999999999999999988889999999887654 47889999999999999 99999
Q ss_pred EeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccC
Q 013365 96 WGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEG 175 (444)
Q Consensus 96 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~ 175 (444)
||.|.+||||.++......|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|..+..+.+
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~ 210 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG 210 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCC--CeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceEEEEeCCCCEEE
Q 013365 176 VSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYS 253 (444)
Q Consensus 176 ~~i~~ia~G~--~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~vy~ 253 (444)
.+|++|+||. .|+++|+++|+||+||.|.+||||.+.......|.++..+. +.+|++|+||.+|+++|+++|+||+
T Consensus 211 ~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~--~~~v~~v~~G~~hs~alt~~G~v~~ 288 (389)
T 3kci_A 211 HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT--GLGVVKVECGSQFSVALTKSGAVYT 288 (389)
T ss_dssp SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT--TSCEEEEEEETTEEEEEETTSCEEE
T ss_pred CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC--CCcEEEEeCCCCEEEEEeCCCeEEE
Confidence 9999999995 89999999999999999999999999888888888887654 6789999999999999999999999
Q ss_pred EeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecCCCcccccCCCCCccCceEeccC--
Q 013365 254 YGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFP-- 331 (444)
Q Consensus 254 ~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~g~~~~~~~p~~v~~~-- 331 (444)
||.|.+||||.+.......|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++..+...|++++.+
T Consensus 289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~ 368 (389)
T 3kci_A 289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQG 368 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTT
T ss_pred EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCC
Confidence 999999999999988899999999999889999999999999999999999999999999999999999999998754
Q ss_pred --CCcEEecCCeeEEEeCCC
Q 013365 332 --LDQISCGWRHTLAVTERQ 349 (444)
Q Consensus 332 --~~~i~~G~~h~~~l~~~g 349 (444)
..+|+||..|++||++++
T Consensus 369 ~~v~~va~G~~ht~al~~~~ 388 (389)
T 3kci_A 369 KKVNRVACGSAHTLAWSTSK 388 (389)
T ss_dssp SCCCEEEEETTEEEEECC--
T ss_pred CCEEEEEecCCcEEEEecCC
Confidence 349999999999998764
No 7
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=3.1e-64 Score=502.61 Aligned_cols=335 Identities=36% Similarity=0.695 Sum_probs=302.5
Q ss_pred CcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCC-eEEEEE
Q 013365 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEG-EVQSWG 149 (444)
Q Consensus 71 ~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G-~vy~wG 149 (444)
.+|++|+||..|+++|+++ |+||+||.|.+||||.++..+...|.++..+.+.+|++|+||..|+++|+++| +||+||
T Consensus 16 ~~v~~ia~G~~hs~al~~~-g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 16 RKVLIISAGASHSVALLSG-DIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCEEEEEECSSEEEEEETT-TEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred cceEEEecCCCeEEEEEeC-CEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 5799999999999999999 99999999999999999999999999999998889999999999999999986 999999
Q ss_pred CCCCCccCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCC
Q 013365 150 RNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQR 229 (444)
Q Consensus 150 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~ 229 (444)
.|.+||||.+.......|..+..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+. +
T Consensus 95 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~--~ 172 (406)
T 4d9s_A 95 WGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE--G 172 (406)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT--T
T ss_pred CCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccC--C
Confidence 99999999999988889999999999999999999999999999999999999999999999988888888887654 6
Q ss_pred CeEEEEEecCceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecC
Q 013365 230 EKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWN 309 (444)
Q Consensus 230 ~~i~~Ia~G~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n 309 (444)
.+|++|+||.+|+++|+++|+||+||.|.+||||.++......|.++..+...+|++|+||.+|+++|+++|+||+||.|
T Consensus 173 ~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n 252 (406)
T 4d9s_A 173 IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWS 252 (406)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCC
Confidence 78999999999999999999999999999999999999899999999999888899999999999999999999999999
Q ss_pred CCcccccCCCCCccCceEeccCC----CcEEecCCeeEEEeCCCCEEEEeCCCCCCCCCCCCCCCCCCeEeeccccCCCc
Q 013365 310 KFGQVGVGDNVDHCSPVQVKFPL----DQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSK 385 (444)
Q Consensus 310 ~~gqlG~g~~~~~~~p~~v~~~~----~~i~~G~~h~~~l~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~l~~~~~~ 385 (444)
.+||||.++..+...|.++..+. .+|+||.+|++||+++|+||+||.|.+||||+|+..+...|+++..+.. ..
T Consensus 253 ~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~--~~ 330 (406)
T 4d9s_A 253 KYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDD--QK 330 (406)
T ss_dssp TTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGG--CC
T ss_pred CCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCC--Cc
Confidence 99999999988888898887543 3899999999999999999999999999999999988889999875532 23
Q ss_pred eeEeecc----cccCCCCccccCCCcccc
Q 013365 386 GQNIASS----KYDPSSGKTWVSPSERYA 410 (444)
Q Consensus 386 ~~~~~~~----~~~~~~~~~~~~~~~r~~ 410 (444)
..+++++ .+...++..|.|..+.+.
T Consensus 331 v~~va~G~~hs~alt~~G~v~~wG~n~~G 359 (406)
T 4d9s_A 331 VVQVSCGWRHTLAVTERNNVFAWGRGTNG 359 (406)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCTTS
T ss_pred EEEEEeCCCeEEEEeCCCCEEEecCCCCC
Confidence 3444332 222344767666655543
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=5.8e-64 Score=502.18 Aligned_cols=334 Identities=27% Similarity=0.481 Sum_probs=291.0
Q ss_pred cccCCCCCCCEEEEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCC--CCcCCeeeccCCCCcEEEEEecCCeeEEEEc
Q 013365 11 ASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAE--DRLSPTQLSALDGHEIVSVTCGADHTTAYSE 88 (444)
Q Consensus 11 ~~~~~~~~~~i~~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~--~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~ 88 (444)
.|..++.+.+|++|+||..|+++|+++|+||+||.|.+||||.+... ....|+++. +. .+|++|+||.+|+++|++
T Consensus 51 ~P~~v~~~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-l~-~~i~~va~G~~hs~alt~ 128 (413)
T 1a12_A 51 KPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVE-LQ-EKVVQVSAGDSHTAALTD 128 (413)
T ss_dssp EEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECC-CC-SCEEEEEECSSEEEEEET
T ss_pred cceEccCCCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEec-CC-CcEEEEecCCCeEEEEcC
Confidence 34555567899999999999999999999999999999999998763 466888884 33 389999999999999999
Q ss_pred CCCEEEEEeC--CCCCccCCCCCCCc-eeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCC--
Q 013365 89 SCMQVYSWGW--GDFGRLGHGNSSDL-FTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTED-- 163 (444)
Q Consensus 89 ~~g~v~~wG~--n~~gqlG~~~~~~~-~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~-- 163 (444)
+ |+||+||. |.+||||.+..... ..|.++ +...+|++|+||.+|+++|+++|+||+||.|.+||||.+....
T Consensus 129 ~-G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~ 205 (413)
T 1a12_A 129 D-GRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFAN 205 (413)
T ss_dssp T-SCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSS
T ss_pred C-CcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccc
Confidence 9 99999999 99999998866443 346666 5567999999999999999999999999999999999875421
Q ss_pred ---------cccceeeecc-----cCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCC
Q 013365 164 ---------SLVPQKLQAF-----EGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQR 229 (444)
Q Consensus 164 ---------~~~p~~v~~~-----~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~ 229 (444)
...|..+... ...+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+....
T Consensus 206 ~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~ 285 (413)
T 1a12_A 206 RGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNST 285 (413)
T ss_dssp SCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTT
T ss_pred ccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCC
Confidence 2456555432 34689999999999999999999999999999999999888888888887665323
Q ss_pred CeEEEEEecCceEEEEeCCCCEEEEeCCCCCcccCC-CCCCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeec
Q 013365 230 EKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHG-DFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGW 308 (444)
Q Consensus 230 ~~i~~Ia~G~~hs~~lt~~G~vy~~G~n~~gqLG~~-~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~ 308 (444)
.+|++|+||.+|+++|+++|+||+||.|.+||||.+ .......|++++.+. +|++|+||.+|+++|+++|+||+||.
T Consensus 286 ~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~ 363 (413)
T 1a12_A 286 KSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGM 363 (413)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred ceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccC--ceeEEEECcceEEEEeCCCCEEEecC
Confidence 679999999999999999999999999999999998 556678899998887 59999999999999999999999999
Q ss_pred CCCcccccCCCCCccCceEeccC------CCcEEecCCeeEEEeCCCCE
Q 013365 309 NKFGQVGVGDNVDHCSPVQVKFP------LDQISCGWRHTLAVTERQNV 351 (444)
Q Consensus 309 n~~gqlG~g~~~~~~~p~~v~~~------~~~i~~G~~h~~~l~~~g~v 351 (444)
|.+||||.++..+...|+++..+ ..+|+||.+|+++|+++|++
T Consensus 364 n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 364 GTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp CTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred CCCCCCCCCCCCCcccCeEccccccCCCeEEEEeeCCCcEEEEEecCCC
Confidence 99999999999888999998753 23899999999999998864
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=2.9e-62 Score=491.60 Aligned_cols=329 Identities=26% Similarity=0.402 Sum_probs=289.3
Q ss_pred cccCCCCCCCEEEEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCC--CcCCeeeccCCCCcEEEEEecCCeeEEEEc
Q 013365 11 ASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED--RLSPTQLSALDGHEIVSVTCGADHTTAYSE 88 (444)
Q Consensus 11 ~~~~~~~~~~i~~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~--~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~ 88 (444)
.|..++...+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|+++... .+|++|+||..|+++|++
T Consensus 67 ~p~~v~~l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~ 144 (423)
T 3mvd_K 67 RLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLE 144 (423)
T ss_dssp EEEECCSCSSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEET
T ss_pred CCeEccCCCCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeC
Confidence 456667778899999999999999999999999999999999987764 6788888744 379999999999999999
Q ss_pred CCCEEEEEeC--CCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCC----
Q 013365 89 SCMQVYSWGW--GDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE---- 162 (444)
Q Consensus 89 ~~g~v~~wG~--n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~---- 162 (444)
+ |+||+||. |.+||||.+...... .|+..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+...
T Consensus 145 ~-G~v~~wG~~~n~~GqlG~~~~~~~~--~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~ 221 (423)
T 3mvd_K 145 D-GRVFAWGSFRDSHGNMGLTIDGNKR--TPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISG 221 (423)
T ss_dssp T-SCEEEEECEECSSSEEESBTTBCEE--EEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTS
T ss_pred C-CeEEEEeCCCCCCCCcCcCCCCCCc--eeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCccccccc
Confidence 9 99999999 999999998776654 44555667799999999999999999999999999999999997653
Q ss_pred -------CcccceeeecccCCcEEEEEeCCCeEEEE-eCCCCEEEeeCCCCCCcCCCCCCCcc--ceeeeeeeecCCCeE
Q 013365 163 -------DSLVPQKLQAFEGVSIKMVAAGAEHSVAV-AEDGELYGWGWGRYGNLGLGDRNDRL--IPEKVATVDLQREKM 232 (444)
Q Consensus 163 -------~~~~p~~v~~~~~~~i~~ia~G~~h~~~L-t~~G~vy~wG~n~~gqlG~~~~~~~~--~p~~v~~~~~~~~~i 232 (444)
....|..+..+...+|++|+||.+|++++ +++|+||+||.|.+||||.+...... .|.++. ..+|
T Consensus 222 ~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-----~~~v 296 (423)
T 3mvd_K 222 EGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE-----LKDI 296 (423)
T ss_dssp CSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC-----CCSE
T ss_pred ccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC-----CCCe
Confidence 44578888877788999999999999999 69999999999999999996554433 344332 3589
Q ss_pred EEEEecCceEEEEeCCCCEEEEeCCCCCcccCCCCCC-ceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecCCC
Q 013365 233 VMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKD-HLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKF 311 (444)
Q Consensus 233 ~~Ia~G~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~-~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~ 311 (444)
++|+||.+|+++|+++|+||+||.|.+||||.++... ...|++++.+.. +|++|+||.+|+++|+++|+||+||.|.+
T Consensus 297 ~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~ 375 (423)
T 3mvd_K 297 RHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVN 375 (423)
T ss_dssp EEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTT
T ss_pred EEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCC
Confidence 9999999999999999999999999999999998766 468999988876 79999999999999999999999999999
Q ss_pred cccccCCCCCccCceEeccC------CCcEEecCCeeEEEeCCCC
Q 013365 312 GQVGVGDNVDHCSPVQVKFP------LDQISCGWRHTLAVTERQN 350 (444)
Q Consensus 312 gqlG~g~~~~~~~p~~v~~~------~~~i~~G~~h~~~l~~~g~ 350 (444)
||||.++..+...|++|..+ ..+|+||..|+++|+++++
T Consensus 376 GqLG~g~~~~~~~P~~v~~~~~~~~~v~~va~G~~ht~~l~~~~k 420 (423)
T 3mvd_K 376 NQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKADK 420 (423)
T ss_dssp SCSSSSSSCCEEEEEECCSTTTTTCCEEEEEECSSEEEEEEECC-
T ss_pred CCCCCCCCCCcccCeEEeCcccCCCEEEEEEECCCcEEEEEcccc
Confidence 99999999999999999742 2389999999999999874
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-61 Score=491.88 Aligned_cols=323 Identities=26% Similarity=0.483 Sum_probs=278.1
Q ss_pred CCCCEEEEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCC-----------------------CcCCeeecc--C---
Q 013365 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED-----------------------RLSPTQLSA--L--- 68 (444)
Q Consensus 17 ~~~~i~~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~-----------------------~~~P~~v~~--~--- 68 (444)
...+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|++++. +
T Consensus 65 ~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~ 144 (473)
T 3of7_A 65 DEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPL 144 (473)
T ss_dssp TTTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHH
T ss_pred CCCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcc
Confidence 456999999999999999999999999999999999987654 467888875 5
Q ss_pred -CCCcEEEEEecCCeeEEEEcCCCEEEEEeC--CCCCccCCCCC--CCceeeeeecccCCCCEEEEEeCCceEEEEecCC
Q 013365 69 -DGHEIVSVTCGADHTTAYSESCMQVYSWGW--GDFGRLGHGNS--SDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEG 143 (444)
Q Consensus 69 -~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~--n~~gqlG~~~~--~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G 143 (444)
.+.+|++|+||..|+++|+++ |+||+||. |..||||.+.. .....|..+..+.+.+|++|+||..|+++|+++|
T Consensus 145 ~~~~~i~~va~G~~hs~alt~~-G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G 223 (473)
T 3of7_A 145 AEGHKVVQLAATDNMSCALFSN-GEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEG 223 (473)
T ss_dssp HTTCCEEEEEECSSEEEEEETT-SCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTS
T ss_pred cCCCcEEEEEccCCEEEEEeCC-CeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCC
Confidence 357899999999999999999 99999998 67899998544 4566888888888889999999999999999999
Q ss_pred eEEEEECCCCCccCCCCCCC----cccceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCC----
Q 013365 144 EVQSWGRNQNGQLGLGTTED----SLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND---- 215 (444)
Q Consensus 144 ~vy~wG~n~~gqlG~~~~~~----~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~---- 215 (444)
+||+||.|.+||||.+.... ...|..+.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+....
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~ 300 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGAL 300 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCE
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCce
Confidence 99999999999999986553 345655532 5799999999999999999999999999999999887642
Q ss_pred ccceeeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcccCCCC--------------CCceeeeeeccccC
Q 013365 216 RLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDF--------------KDHLVPCQLEALRE 281 (444)
Q Consensus 216 ~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~vy~~G~n~~gqLG~~~~--------------~~~~~p~~v~~~~~ 281 (444)
...|.++..+. +.+|++|+||.+|+++|+++|+||+||.|.+||||.+.. .....|.++..+.
T Consensus 301 ~~~P~~v~~~~--~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~- 377 (473)
T 3of7_A 301 VTKPKRLALPD--NVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP- 377 (473)
T ss_dssp EEEEEECCCCT--TCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC-
T ss_pred eeccccccccC--CccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC-
Confidence 34577766443 678999999999999999999999999999999998642 1234566666554
Q ss_pred CcEEEEecCCCceeEEeCCCcEEEeecCCCcccccCC-CCCccCceEeccC------CCcEEecCCeeEEEeC
Q 013365 282 SFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGD-NVDHCSPVQVKFP------LDQISCGWRHTLAVTE 347 (444)
Q Consensus 282 ~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~g~-~~~~~~p~~v~~~------~~~i~~G~~h~~~l~~ 347 (444)
+|++|+||.+|+++|+++|+||+||.|.+||||.++ ..+...|++|+.+ ..+|+||..|++++..
T Consensus 378 -~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~ 449 (473)
T 3of7_A 378 -KFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGV 449 (473)
T ss_dssp -CEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEE
T ss_pred -ceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEEe
Confidence 599999999999999999999999999999999999 7777899999743 2389999999999975
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=7.7e-53 Score=398.83 Aligned_cols=261 Identities=26% Similarity=0.426 Sum_probs=218.2
Q ss_pred cccCCCCCCCEEEEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCCeeEEEEcCC
Q 013365 11 ASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESC 90 (444)
Q Consensus 11 ~~~~~~~~~~i~~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~ 90 (444)
.+.+.+...+|++|+||..|+++|+ ||+||+||.|.+||||. |.. . ..+|++|+||.+|+++|+ +
T Consensus 16 ~~~p~~~~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~--------p~~--~--~~~i~~ia~G~~hs~~l~-~- 80 (282)
T 3qhy_B 16 ATVPAEAQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM--------PAA--T--QSGVDAIAAGNYHSLALK-D- 80 (282)
T ss_dssp TCCCGGGSSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC--------CGG--G--GSCCCEEEECSSEEEEEE-T-
T ss_pred ccCCccccCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC--------Ccc--C--CCCEEEEEeCCCEEEEEE-C-
Confidence 3445556679999999999999998 99999999999999994 221 1 236999999999999995 7
Q ss_pred CEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceee
Q 013365 91 MQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (444)
Q Consensus 91 g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v 170 (444)
|+||+||.|.+||||. |.++. .+|++|+||.+|+++|+ +|+||+||.|.+||||... .
T Consensus 81 G~v~~wG~n~~Gqlg~--------P~~~~----~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~--------~- 138 (282)
T 3qhy_B 81 GEVIAWGGNEDGQTTV--------PAEAR----SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA--------E- 138 (282)
T ss_dssp TEEEEEECCTTSTTCC--------CGGGS----SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG--------G-
T ss_pred CEEEEeeCCCCCCCCC--------CcccC----CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc--------c-
Confidence 9999999999999985 33332 38999999999999999 9999999999999998421 1
Q ss_pred ecccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceEEEEeCCCC
Q 013365 171 QAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGR 250 (444)
Q Consensus 171 ~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~ 250 (444)
...+|++|+||.+|+++|+ +|+||+||.|.+|||+. |.++ ..+|++|+||.+|+++| ++|+
T Consensus 139 ---~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~------~~~v~~i~~G~~hs~al-~~G~ 199 (282)
T 3qhy_B 139 ---AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA------QSGVDDVAGGIFHSLAL-KDGK 199 (282)
T ss_dssp ---GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG------GSSEEEEEECSSEEEEE-ETTE
T ss_pred ---CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec------CCCeEEEEecCCEEEEE-ECCe
Confidence 1246999999999999999 89999999999999983 2222 35899999999999999 8999
Q ss_pred EEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecCCCcccccCCCCCccCceEecc
Q 013365 251 LYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKF 330 (444)
Q Consensus 251 vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~g~~~~~~~p~~v~~ 330 (444)
||+||.|.+||||.+. +.+ .+|++|+||.+|+++|+ +|+||+||.|.++|++.. .
T Consensus 200 v~~wG~n~~gqlg~p~----------~~~--~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~------------~ 254 (282)
T 3qhy_B 200 VIAWGDNRYKQTTVPT----------EAL--SGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ------------S 254 (282)
T ss_dssp EEEEECCTTSTTCCCG----------GGG--SSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS------------S
T ss_pred EEEEECCCCCCCCCCc----------ccC--CCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC------------C
Confidence 9999999999998532 122 24999999999999999 999999999999998752 1
Q ss_pred CCCcEEecCCeeEEEeCCCCEE
Q 013365 331 PLDQISCGWRHTLAVTERQNVF 352 (444)
Q Consensus 331 ~~~~i~~G~~h~~~l~~~g~v~ 352 (444)
...+|+||..|++||+++++.+
T Consensus 255 ~v~~iaaG~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 255 GVSSIEAGPNAAYALKGGSGSG 276 (282)
T ss_dssp CEEEEEECSSCEEEEEC-----
T ss_pred CcEEEEECcCeEEEEecCCCCC
Confidence 3458999999999999987654
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1.3e-51 Score=390.38 Aligned_cols=251 Identities=27% Similarity=0.458 Sum_probs=210.8
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeee
Q 013365 38 NIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLP 117 (444)
Q Consensus 38 g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~ 117 (444)
.+||+||+|...++. |.+++.+. +|++|+||..|+++|+ + |+||+||.|.+||||.+ .
T Consensus 2 ~~v~~WG~n~~~~~~---------~~p~~~~~--~i~~ia~G~~h~~~l~-~-G~v~~wG~n~~Gqlg~p--------~- 59 (282)
T 3qhy_B 2 TSVVAWGGNNDWGEA---------TVPAEAQS--GVDAIAGGYFHGLALK-G-GKVLGWGANLNGQLTMP--------A- 59 (282)
T ss_dssp CEEEEECSCCTTSTT---------CCCGGGSS--SCCEEEECSSEEEEEE-T-TEEEEEECCSSSTTSCC--------G-
T ss_pred eEEEEeCCCCCcCcc---------cCCccccC--CCcEEEeCCCeEEEEE-C-CEEEEEeCCCCCCCCCC--------c-
Confidence 369999998655432 22333333 6999999999999998 7 99999999999999952 2
Q ss_pred ecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEeCCCCE
Q 013365 118 IKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGEL 197 (444)
Q Consensus 118 v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~v 197 (444)
.. ..+|++|+||.+|+++|+ +|+||+||.|.+||||. |.++. .+|++|+||.+|+++|+ +|+|
T Consensus 60 -~~--~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~--------P~~~~----~~v~~ia~G~~hs~al~-~G~v 122 (282)
T 3qhy_B 60 -AT--QSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--------PAEAR----SGVDAIAAGAWASYALK-DGKV 122 (282)
T ss_dssp -GG--GSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGGS----SSEEEEEEETTEEEEEE-TTEE
T ss_pred -cC--CCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC--------CcccC----CCeEEEECcCCEEEEEe-CCeE
Confidence 11 237999999999999996 99999999999999985 33332 37999999999999999 9999
Q ss_pred EEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeec
Q 013365 198 YGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLE 277 (444)
Q Consensus 198 y~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~ 277 (444)
|+||.|.+|||+... + ...+|++|+||.+|+++|+ +|+||+||.|.+||||. |.++
T Consensus 123 ~~wG~n~~gqlg~~~--------~------~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~- 178 (282)
T 3qhy_B 123 IAWGDDSDGQTTVPA--------E------AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA- 178 (282)
T ss_dssp EEEECCTTSTTSCCG--------G------GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG-
T ss_pred EEecCCCCCcCCCCc--------c------CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec-
Confidence 999999999998421 1 1347999999999999999 89999999999999983 2222
Q ss_pred cccCCcEEEEecCCCceeEEeCCCcEEEeecCCCcccccCCCCCccCceEeccCCCcEEecCCeeEEEeCCCCEEEEeCC
Q 013365 278 ALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGRG 357 (444)
Q Consensus 278 ~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~g~~~~~~~p~~v~~~~~~i~~G~~h~~~l~~~g~v~~wG~n 357 (444)
..+|++|+||.+|+++| ++|+||+||.|.+||||... +......+|+||..|+++|+ +|+||+||.|
T Consensus 179 ---~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~--------~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n 245 (282)
T 3qhy_B 179 ---QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPT--------EALSGVSAIASGEWYSLALK-NGKVIAWGSS 245 (282)
T ss_dssp ---GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCG--------GGGSSCCEEEECSSCEEEEE-TTEEEEESTT
T ss_pred ---CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCc--------ccCCCceEEEcCCCEEEEEE-CCEEEEecCC
Confidence 34599999999999999 89999999999999998532 23345669999999999999 9999999999
Q ss_pred CCCCCCC
Q 013365 358 TNGQLGH 364 (444)
Q Consensus 358 ~~gqLG~ 364 (444)
+++|++.
T Consensus 246 ~~gq~~v 252 (282)
T 3qhy_B 246 RTAPSSV 252 (282)
T ss_dssp CCCCGGG
T ss_pred CCccccC
Confidence 9999975
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.36 E-value=0.13 Score=50.19 Aligned_cols=278 Identities=12% Similarity=0.109 Sum_probs=159.0
Q ss_pred CCCEEEEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCCeeEEEEcCCCEEEEEe
Q 013365 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWG 97 (444)
Q Consensus 18 ~~~i~~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG 97 (444)
...|..++......+.-..||.|.+|-..... ....+.. ....|..++......+.-..+ |.|..|-
T Consensus 133 ~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~-----------~~~~~~~-h~~~v~~l~~~~~~l~sg~~d-g~i~vwd 199 (435)
T 1p22_A 133 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLE-----------CKRILTG-HTGSVLCLQYDERVIITGSSD-STVRVWD 199 (435)
T ss_dssp CCCEEEEECCSSEEEEEESSSCEEEEESSSCC-----------EEEEECC-CSSCEEEEECCSSEEEEEETT-SCEEEEE
T ss_pred CCcEEEEEECCCEEEEEeCCCeEEEEeCCCCe-----------EEEEEcC-CCCcEEEEEECCCEEEEEcCC-CeEEEEE
Confidence 34688888877777777899999999543211 1111211 124578888866666666666 9999996
Q ss_pred CCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCc
Q 013365 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVS 177 (444)
Q Consensus 98 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~ 177 (444)
..... ....+. .....|..++......+.-+.||.|+.|-...... ........-....
T Consensus 200 ~~~~~-----------~~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~---------~~~~~~~~~~~~~ 258 (435)
T 1p22_A 200 VNTGE-----------MLNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD---------ITLRRVLVGHRAA 258 (435)
T ss_dssp SSSCC-----------EEEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC---------CEEEEEECCCSSC
T ss_pred CCCCc-----------EEEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC---------ceeeeEecCCCCc
Confidence 53221 111111 12347888888888888889999999996533111 0111111112335
Q ss_pred EEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCC
Q 013365 178 IKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWS 257 (444)
Q Consensus 178 i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~vy~~G~n 257 (444)
|..++......+.-..||.|..|-.... ..+..+......|..++......+.-..+|.|..|-..
T Consensus 259 v~~~~~~~~~l~s~~~dg~i~vwd~~~~--------------~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~ 324 (435)
T 1p22_A 259 VNVVDFDDKYIVSASGDRTIKVWNTSTC--------------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 324 (435)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTTC--------------CEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCcC--------------cEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 7777777777777888999999964321 12222232345677777777777778889999999643
Q ss_pred CCCcccCCCCCCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecCCCcccccCCCCCccCceE-e---ccCCC
Q 013365 258 KYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQ-V---KFPLD 333 (444)
Q Consensus 258 ~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~g~~~~~~~p~~-v---~~~~~ 333 (444)
.. + ....+. .....|..++....+.+.-..+|.|..|-......... .....+.. + ...+.
T Consensus 325 ~~-~----------~~~~~~-~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~h~~~v~ 389 (435)
T 1p22_A 325 CG-A----------CLRVLE-GHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRA---PAGTLCLRTLVEHSGRVF 389 (435)
T ss_dssp TC-C----------EEEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTS---CTTTTEEEEECCCSSCCC
T ss_pred CC-C----------EEEEEe-CCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccc---cccchheeeccCCCCCeE
Confidence 21 1 011111 12234777777666666667899999996432110000 00000111 1 11223
Q ss_pred cEEecCCeeEEEeCCCCEEEEeCCC
Q 013365 334 QISCGWRHTLAVTERQNVFSWGRGT 358 (444)
Q Consensus 334 ~i~~G~~h~~~l~~~g~v~~wG~n~ 358 (444)
.++....+.+....||.|..|--..
T Consensus 390 ~l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 390 RLQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp CEEECSSCEEECCSSSEEEEEC---
T ss_pred EEEeCCCEEEEEeCCCEEEEEECCC
Confidence 5555555555666789999997543
No 14
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.60 E-value=0.59 Score=45.41 Aligned_cols=267 Identities=11% Similarity=0.052 Sum_probs=153.0
Q ss_pred EEEEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCC--CCcEEEEEecCCeeEEEEcCCCEEEEEeC
Q 013365 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALD--GHEIVSVTCGADHTTAYSESCMQVYSWGW 98 (444)
Q Consensus 21 i~~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~--~~~i~~i~~G~~~~~~l~~~~g~v~~wG~ 98 (444)
+..++.-+...+.-..||.|.+|-..... .+..+. ...|..++......+.-..+ |.|+.|-.
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~--------------~~~~~~~h~~~v~~~~~~~~~l~s~~~d-g~i~vwd~ 186 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGK--------------CLRTLVGHTGGVWSSQMRDNIIISGSTD-RTLKVWNA 186 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCC--------------EEEECCCCSSCEEEEEEETTEEEEEETT-SCEEEEET
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCc--------------EEEEEcCCCCCEEEEEecCCEEEEEeCC-CeEEEEEC
Confidence 44555555556666788889988653221 111111 23577777766666666777 99999964
Q ss_pred CCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcE
Q 013365 99 GDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSI 178 (444)
Q Consensus 99 n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i 178 (444)
.... ....+. .....|..++......+.-+.||.|+.|-...... ...+. .....|
T Consensus 187 ~~~~-----------~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----------~~~~~-~~~~~v 242 (445)
T 2ovr_B 187 ETGE-----------CIHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC-----------LHVLM-GHVAAV 242 (445)
T ss_dssp TTTE-----------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE-----------EEEEE-CCSSCE
T ss_pred CcCc-----------EEEEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcE-----------EEEEc-CCcccE
Confidence 3211 111111 12336888888778888888999999996543110 01111 123357
Q ss_pred EEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCC
Q 013365 179 KMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSK 258 (444)
Q Consensus 179 ~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~vy~~G~n~ 258 (444)
..++......+.-..+|.|+.|-... ...+..+......|..++....+.+.-..+|.|+.|-...
T Consensus 243 ~~~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~ 308 (445)
T 2ovr_B 243 RCVQYDGRRVVSGAYDFMVKVWDPET--------------ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVET 308 (445)
T ss_dssp EEEEECSSCEEEEETTSCEEEEEGGG--------------TEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTT
T ss_pred EEEEECCCEEEEEcCCCEEEEEECCC--------------CcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCC
Confidence 77777677777778899999995322 1222233323456777777777777778899999996432
Q ss_pred CCcccCCCCCCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecCCCcccccCCCCCccCceEeccCCCcEEec
Q 013365 259 YGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISCG 338 (444)
Q Consensus 259 ~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~g~~~~~~~p~~v~~~~~~i~~G 338 (444)
... ...+. .....+..++......+.-..+|.|..|-......+..-. .+.........++..
T Consensus 309 ~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~ 371 (445)
T 2ovr_B 309 GNC-----------IHTLT-GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ-----GPNKHQSAVTCLQFN 371 (445)
T ss_dssp CCE-----------EEEEC-CCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEEC-----STTSCSSCEEEEEEC
T ss_pred CCE-----------EEEEc-CCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEc-----cCCCCCCCEEEEEEC
Confidence 111 11111 1122355666656666666789999999654321111000 000001111245555
Q ss_pred CCeeEEEeCCCCEEEEeCC
Q 013365 339 WRHTLAVTERQNVFSWGRG 357 (444)
Q Consensus 339 ~~h~~~l~~~g~v~~wG~n 357 (444)
..+.+.-..||.|..|-..
T Consensus 372 ~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 372 KNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp SSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEeCCCeEEEEECC
Confidence 5666777788999999653
No 15
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.09 E-value=0.01 Score=52.64 Aligned_cols=72 Identities=21% Similarity=0.263 Sum_probs=59.1
Q ss_pred CcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEe
Q 013365 176 VSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYG 255 (444)
Q Consensus 176 ~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~vy~~G 255 (444)
..|..|+-...|..++--+++++.+|+++.||+-.... .....++.+|.++++-+..-..+-.||
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t---------------agPfla~~AG~~fTVTVn~~nyv~FWG 373 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH---------------AGPYIQLAAGHNFTVTVNTLNQVMFWG 373 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG---------------GCCEEEEEECSSEEEEEETTCCEEEEE
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCC---------------cchHHhHhccCCeEEEEeceeeEEEec
Confidence 35777888899999999999999999999999954321 236778999999999999999999999
Q ss_pred CCCCCcc
Q 013365 256 WSKYGQL 262 (444)
Q Consensus 256 ~n~~gqL 262 (444)
+.....|
T Consensus 374 DSPDNSL 380 (400)
T 4gbf_A 374 DSPDNSL 380 (400)
T ss_dssp CCTTSTT
T ss_pred CCCCcce
Confidence 8654443
No 16
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.83 E-value=0.014 Score=51.71 Aligned_cols=72 Identities=18% Similarity=0.216 Sum_probs=58.8
Q ss_pred CeEEEEEecCceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecC
Q 013365 230 EKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWN 309 (444)
Q Consensus 230 ~~i~~Ia~G~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n 309 (444)
..|..|+.-+.|..++--+++++.||+++.||+-.... .- +..++.+|.++++-+..-+.+-.||..
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t---ag----------Pfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH---AG----------PYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG---GC----------CEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCC---cc----------hHHhHhccCCeEEEEeceeeEEEecCC
Confidence 46778888999999999999999999999999954331 11 377899999999999999999999976
Q ss_pred CCccc
Q 013365 310 KFGQV 314 (444)
Q Consensus 310 ~~gql 314 (444)
....|
T Consensus 376 PDNSL 380 (400)
T 4gbf_A 376 PDNSL 380 (400)
T ss_dssp TTSTT
T ss_pred CCcce
Confidence 55444
No 17
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.78 E-value=1.5 Score=42.37 Aligned_cols=229 Identities=10% Similarity=0.057 Sum_probs=133.2
Q ss_pred cEEEEEecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECC
Q 013365 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRN 151 (444)
Q Consensus 72 ~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n 151 (444)
.|..++....+.+.-..+ |.|..|-..... ....+. .....|..++......+.-+.||.|..|-..
T Consensus 135 ~v~~~~~d~~~l~~g~~d-g~i~iwd~~~~~-----------~~~~~~-~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRD-NTIKIWDKNTLE-----------CKRILT-GHTGSVLCLQYDERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CEEEEECCSSEEEEEESS-SCEEEEESSSCC-----------EEEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEESS
T ss_pred cEEEEEECCCEEEEEeCC-CeEEEEeCCCCe-----------EEEEEc-CCCCcEEEEEECCCEEEEEcCCCeEEEEECC
Confidence 477777766777777777 999999643211 111111 1233688888877777777889999999653
Q ss_pred CCCccCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCe
Q 013365 152 QNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREK 231 (444)
Q Consensus 152 ~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~ 231 (444)
.... ...+. .....|..++......+.-..||.|..|-...... ......+......
T Consensus 202 ~~~~-----------~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~ 258 (435)
T 1p22_A 202 TGEM-----------LNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD-----------ITLRRVLVGHRAA 258 (435)
T ss_dssp SCCE-----------EEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC-----------CEEEEEECCCSSC
T ss_pred CCcE-----------EEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC-----------ceeeeEecCCCCc
Confidence 3110 01111 12336788888778888888999999996432111 1111122222346
Q ss_pred EEEEEecCceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecCCC
Q 013365 232 MVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKF 311 (444)
Q Consensus 232 i~~Ia~G~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~ 311 (444)
|..++....+.+.-..+|.|..|-..... ....+. .....|..++......+.-..+|.|..|-....
T Consensus 259 v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~-~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 259 VNVVDFDDKYIVSASGDRTIKVWNTSTCE-----------FVRTLN-GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTTCC-----------EEEEEE-CCSSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCcCc-----------EEEEEc-CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCC
Confidence 77777777777778889999999643211 111111 122346666666666666678999999975432
Q ss_pred cccccCCCCCccCceEeccCCCcEEecCCeeEEEeCCCCEEEEeC
Q 013365 312 GQVGVGDNVDHCSPVQVKFPLDQISCGWRHTLAVTERQNVFSWGR 356 (444)
Q Consensus 312 gqlG~g~~~~~~~p~~v~~~~~~i~~G~~h~~~l~~~g~v~~wG~ 356 (444)
-.+-.- ..-......++....+.+.-..||.|..|--
T Consensus 327 ~~~~~~--------~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 327 ACLRVL--------EGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp CEEEEE--------CCCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred CEEEEE--------eCCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 111000 0000111244445556666678899999953
No 18
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.70 E-value=1.7 Score=42.16 Aligned_cols=229 Identities=10% Similarity=0.064 Sum_probs=137.9
Q ss_pred CCCCEEEEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCCeeEEEEcCCCEEEEE
Q 013365 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSW 96 (444)
Q Consensus 17 ~~~~i~~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~w 96 (444)
....|..++......+.-..||.|.+|-..... ....+.. ....|..++......+.-..+ |.|+.|
T Consensus 158 h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~-h~~~v~~~~~~~~~l~s~s~d-g~i~~w 224 (445)
T 2ovr_B 158 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGE-----------CIHTLYG-HTSTVRCMHLHEKRVVSGSRD-ATLRVW 224 (445)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-----------EEEEECC-CSSCEEEEEEETTEEEEEETT-SEEEEE
T ss_pred CCCCEEEEEecCCEEEEEeCCCeEEEEECCcCc-----------EEEEECC-CCCcEEEEEecCCEEEEEeCC-CEEEEE
Confidence 345677777666666666788999999543210 0111111 123577787777777777777 999999
Q ss_pred eCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecc--c
Q 013365 97 GWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAF--E 174 (444)
Q Consensus 97 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~--~ 174 (444)
-..... +..........|..++......+.-+.+|.|+.|-.... ..+..+ .
T Consensus 225 d~~~~~------------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~~ 278 (445)
T 2ovr_B 225 DIETGQ------------CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE--------------TCLHTLQGH 278 (445)
T ss_dssp ESSSCC------------EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT--------------EEEEEECCC
T ss_pred ECCCCc------------EEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCC--------------cEeEEecCC
Confidence 643211 111111123367778777777778888999999964321 111111 1
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEE
Q 013365 175 GVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSY 254 (444)
Q Consensus 175 ~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~vy~~ 254 (444)
...|..++....+.+.-..||.|+.|-.... ..+..+......+..++......+.-..+|.|+.|
T Consensus 279 ~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~--------------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw 344 (445)
T 2ovr_B 279 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETG--------------NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 344 (445)
T ss_dssp SSCEEEEEECSSEEEEEETTSCEEEEETTTC--------------CEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred CCceEEEEECCCEEEEEeCCCeEEEEECCCC--------------CEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEE
Confidence 2357777777777777888999999964321 11222222234566666666777777889999999
Q ss_pred eCCCCCcccCCCCCCceeeeeecc--ccCCcEEEEecCCCceeEEeCCCcEEEeecC
Q 013365 255 GWSKYGQLGHGDFKDHLVPCQLEA--LRESFISQISGGWRHTMAVTSDGKLYGWGWN 309 (444)
Q Consensus 255 G~n~~gqLG~~~~~~~~~p~~v~~--~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n 309 (444)
-..... ....+.. .....|..++....+.+.-..+|.|..|-..
T Consensus 345 d~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 345 DIKTGQ-----------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp ETTTCC-----------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred ECCCCc-----------EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECC
Confidence 643211 1111111 1223477777766666667789999999754
No 19
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.54 E-value=2.3 Score=44.48 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=14.5
Q ss_pred CceEEEEeCCCCEEEEeC
Q 013365 239 WRHTISVSSSGRLYSYGW 256 (444)
Q Consensus 239 ~~hs~~lt~~G~vy~~G~ 256 (444)
..|++++..+++||.+|-
T Consensus 598 ~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 598 YGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp BSCEEEEEETTEEEEECC
T ss_pred ccceEEEeCCCEEEEECC
Confidence 467888777799999984
No 20
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.31 E-value=3.3 Score=43.19 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=52.1
Q ss_pred CceEEEEec-CCeEEEEECCCCCccCCCCCC----CcccceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCC
Q 013365 133 DSHCLAVTV-EGEVQSWGRNQNGQLGLGTTE----DSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGN 207 (444)
Q Consensus 133 ~~h~~~lt~-~G~vy~wG~n~~gqlG~~~~~----~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gq 207 (444)
..|++++.. +|+||.+|-.....--..+.. .......+..++ ..-..|++++..+|+||++|-....
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p-------~~R~~h~~~~~~~~~iyv~GG~~~~- 512 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLS-------HTRFRHSACSLPDGNVLILGGVTEG- 512 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCS-------BCCBSCEEEECTTSCEEEECCBCSS-
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCC-------CCcccceEEEEcCCEEEEECCCCCC-
Confidence 367877776 899999984322110000000 000111111111 1235677777669999999832111
Q ss_pred cCCCCCCCccceeeeeeeecCCCeEEEEEe-------cCceE-EEEeCC-CCEEEEeC
Q 013365 208 LGLGDRNDRLIPEKVATVDLQREKMVMVAC-------GWRHT-ISVSSS-GRLYSYGW 256 (444)
Q Consensus 208 lG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~-------G~~hs-~~lt~~-G~vy~~G~ 256 (444)
. .+..++........+.. -..|+ +++..+ +++|++|-
T Consensus 513 ------~------~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG 558 (695)
T 2zwa_A 513 ------P------AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGG 558 (695)
T ss_dssp ------C------SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECC
T ss_pred ------C------CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECC
Confidence 1 22233333334444432 23455 455655 88999984
No 21
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.00 E-value=3.9 Score=42.24 Aligned_cols=69 Identities=23% Similarity=0.169 Sum_probs=36.3
Q ss_pred CCceeEEeCCCcEEEeecCCCcccccCCCCCccCceEeccCCC------cE-EecCCee-EEEeCCCCEEEEeCCCCC
Q 013365 291 WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLD------QI-SCGWRHT-LAVTERQNVFSWGRGTNG 360 (444)
Q Consensus 291 ~~~~~~lt~~g~vy~wG~n~~gqlG~g~~~~~~~p~~v~~~~~------~i-~~G~~h~-~~l~~~g~v~~wG~n~~g 360 (444)
..|++++.-+|+||+.|-...+.. .+.......+........ .. ..-..|+ +++..+|+||..|.+.++
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~ 533 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG 533 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred ccCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCC
Confidence 357777777999999986444321 111111111111111001 01 1123565 455689999999987654
No 22
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=94.00 E-value=4.3 Score=38.55 Aligned_cols=145 Identities=11% Similarity=0.030 Sum_probs=83.4
Q ss_pred EecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecC--CeeEEEEcCCCEEEEEeCCCC
Q 013365 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA--DHTTAYSESCMQVYSWGWGDF 101 (444)
Q Consensus 24 ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~--~~~~~l~~~~g~v~~wG~n~~ 101 (444)
++-...+.++...||.|+.|-..... ....+.......|..++... .+.++-..+ |.|..|-....
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~~~~ 166 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGS-----------VSALAETDESTYVASVKWSHDGSFLSVGLGN-GLVDIYDVESQ 166 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCC-----------EEEEEECCTTCCEEEEEECTTSSEEEEEETT-SCEEEEETTTC
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCc-----------EeEeeecCCCCCEEEEEECCCCCEEEEECCC-CeEEEEECcCC
Confidence 55556778888899999999754321 11122221234577776643 344444556 99999964322
Q ss_pred CccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEE
Q 013365 102 GRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV 181 (444)
Q Consensus 102 gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i 181 (444)
. ....+. .....|..++......+.-+.+|.|+.|-...... ....+.. ....|..+
T Consensus 167 ~-----------~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~-~~~~v~~~ 223 (401)
T 4aez_A 167 T-----------KLRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH----------QIGTLQG-HSSEVCGL 223 (401)
T ss_dssp C-----------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEEC-CSSCEEEE
T ss_pred e-----------EEEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc----------eeeEEcC-CCCCeeEE
Confidence 1 111111 22347888888777778888999999997542111 0111111 12356666
Q ss_pred EeC--CCeEEEEeCCCCEEEeeCC
Q 013365 182 AAG--AEHSVAVAEDGELYGWGWG 203 (444)
Q Consensus 182 a~G--~~h~~~Lt~~G~vy~wG~n 203 (444)
+.. ....+.-+.||.|+.|-..
T Consensus 224 ~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 224 AWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETT
T ss_pred EEcCCCCEEEEEeCCCeEEEccCC
Confidence 554 3445556678999999643
No 23
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=93.50 E-value=7.8 Score=39.88 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=37.6
Q ss_pred ceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEe----cCCCcee-EEeCCCcEEEeecCCCcc
Q 013365 240 RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQIS----GGWRHTM-AVTSDGKLYGWGWNKFGQ 313 (444)
Q Consensus 240 ~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~----~G~~~~~-~lt~~g~vy~wG~n~~gq 313 (444)
.|++++..+|+||+.|-...++. .........+... .+.......+. .-..|++ ++..+|+||+.|.+.++.
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~y-dp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~ 534 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIY-VPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGD 534 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEE-EGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTT
T ss_pred cCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEE-cCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCC
Confidence 57777778999999995443321 1111111111111 11111122221 2346764 456799999999876553
No 24
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=93.38 E-value=4.8 Score=37.02 Aligned_cols=209 Identities=11% Similarity=0.043 Sum_probs=106.2
Q ss_pred CCCEEEEecC------CCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeecc-CCCCcEEEEEecCC------eeE
Q 013365 18 FRPVLLISAG------ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSA-LDGHEIVSVTCGAD------HTT 84 (444)
Q Consensus 18 ~~~i~~ia~G------~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~-~~~~~i~~i~~G~~------~~~ 84 (444)
..+|..|+.- ....++...++.|.+|-......+ ........ .....|..++...+ +.+
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------RLLQSYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------EeeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 4577777764 455677778889999965432211 00000111 11234666665444 344
Q ss_pred EEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCC---ceEEEEecCCeEEEEECCCCCccCCCCC
Q 013365 85 AYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD---SHCLAVTVEGEVQSWGRNQNGQLGLGTT 161 (444)
Q Consensus 85 ~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~---~h~~~lt~~G~vy~wG~n~~gqlG~~~~ 161 (444)
.-..+ |.|..|-..... ....+. .....|..++... ...+.-+.||.|+.|-.....
T Consensus 90 ~~~~d-g~i~v~d~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------- 149 (366)
T 3k26_A 90 VAGSR-GIIRIINPITMQ-----------CIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT------- 149 (366)
T ss_dssp EEETT-CEEEEECTTTCC-----------EEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-------
T ss_pred EecCC-CEEEEEEchhce-----------Eeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-------
Confidence 44556 999999643211 111122 1234688887643 456666789999999653311
Q ss_pred CCcccceeee--cccCCcEEEEEeC--CCeEEEEeCCCCEEEeeCCCCCCc-------CCCCCC--Cccc-----eeeee
Q 013365 162 EDSLVPQKLQ--AFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNL-------GLGDRN--DRLI-----PEKVA 223 (444)
Q Consensus 162 ~~~~~p~~v~--~~~~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~n~~gql-------G~~~~~--~~~~-----p~~v~ 223 (444)
....+. ......|..++.. ....+....||.|+.|-......+ ...+.. .... .....
T Consensus 150 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T 3k26_A 150 ----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS 225 (366)
T ss_dssp ----EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEE
T ss_pred ----EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccc
Confidence 011110 1123357777654 345556668999999965431110 000000 0000 00011
Q ss_pred eeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCC
Q 013365 224 TVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSK 258 (444)
Q Consensus 224 ~~~~~~~~i~~Ia~G~~hs~~lt~~G~vy~~G~n~ 258 (444)
........|..++......+.-..+|.|..|-...
T Consensus 226 ~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 226 TRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp ECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESS
T ss_pred cccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCC
Confidence 11112334555555466777777899999997543
No 25
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=93.35 E-value=4.5 Score=36.66 Aligned_cols=273 Identities=9% Similarity=0.015 Sum_probs=133.2
Q ss_pred ecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCCe-eEEEEcCCCEEEEEeCCCCCc
Q 013365 25 SAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADH-TTAYSESCMQVYSWGWGDFGR 103 (444)
Q Consensus 25 a~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~-~~~l~~~~g~v~~wG~n~~gq 103 (444)
..+.-..+++..||++++.+......+....... ..+..... ....|..++...+. .++...+ |.|..|-......
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~d-g~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH-ARQINTLN-HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE-EEEEEEEC-CSSCCCEEEECSSSSEEEEECB-SEEEEEETTSTTC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCc-cccceecc-CCCceEEEEEecCCcEEEEcCC-CeEEEEECCCCCc
Confidence 3455677888999999988875544332211111 11111111 12346666655443 3333345 9999997543221
Q ss_pred cCCCCCCCceeeeeecc-cCCCCEEEEEeCC--ceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEE
Q 013365 104 LGHGNSSDLFTPLPIKA-LHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM 180 (444)
Q Consensus 104 lG~~~~~~~~~p~~v~~-~~~~~i~~Ia~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ 180 (444)
.. ....+.. .....|..++... ...+.-..+|.|+.|-..... .............|..
T Consensus 85 ~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~----------~~~~~~~~~~~~~i~~ 146 (337)
T 1gxr_A 85 KS--------PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT----------PRIKAELTSSAPACYA 146 (337)
T ss_dssp CS--------CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC------------EEEEEEECSSSCEEE
T ss_pred ee--------eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC----------cceeeecccCCCceEE
Confidence 10 0011110 1233677776653 345555678999999643210 0011111112234666
Q ss_pred EEeC--CCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEec--CceEEEEeCCCCEEEEeC
Q 013365 181 VAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG--WRHTISVSSSGRLYSYGW 256 (444)
Q Consensus 181 ia~G--~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G--~~hs~~lt~~G~vy~~G~ 256 (444)
++.. ....+.-..+|.|+.|-.... ..+..+......|..++.. ....+....+|.|+.|-.
T Consensus 147 ~~~~~~~~~l~~~~~dg~v~~~d~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 212 (337)
T 1gxr_A 147 LAISPDSKVCFSCCSDGNIAVWDLHNQ--------------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCC--------------ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEEC
Confidence 5543 345566668899999964321 1122222223456666553 335555667888888864
Q ss_pred CCCCcccCCCCCCceeeeeeccccCCcEEEEec--CCCceeEEeCCCcEEEeecCCCcccccCCCCCccCceEecc---C
Q 013365 257 SKYGQLGHGDFKDHLVPCQLEALRESFISQISG--GWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKF---P 331 (444)
Q Consensus 257 n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~lt~~g~vy~wG~n~~gqlG~g~~~~~~~p~~v~~---~ 331 (444)
.... ....+.. ...+..++. .....++-..+|.|+.|-...... ..+.. .
T Consensus 213 ~~~~-----------~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~ 267 (337)
T 1gxr_A 213 REGR-----------QLQQHDF--TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK------------YQLHLHESC 267 (337)
T ss_dssp TTTE-----------EEEEEEC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE------------EEECCCSSC
T ss_pred CCCc-----------eEeeecC--CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe------------EEEcCCccc
Confidence 3211 1111111 122555443 333444456788888886543211 11111 1
Q ss_pred CCcEEec--CCeeEEEeCCCCEEEEeCC
Q 013365 332 LDQISCG--WRHTLAVTERQNVFSWGRG 357 (444)
Q Consensus 332 ~~~i~~G--~~h~~~l~~~g~v~~wG~n 357 (444)
...++.. ....+....+|.|+.|-..
T Consensus 268 v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 268 VLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 1123332 3445555677888888653
No 26
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=92.94 E-value=5.3 Score=36.35 Aligned_cols=217 Identities=11% Similarity=0.019 Sum_probs=119.3
Q ss_pred CCCCEEEEecCC--CceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEec---CCeeEEEEcCCC
Q 013365 17 PFRPVLLISAGA--SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG---ADHTTAYSESCM 91 (444)
Q Consensus 17 ~~~~i~~ia~G~--~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G---~~~~~~l~~~~g 91 (444)
....+..+.... .+.++++++|++|.---.. |- . .... . + .-++.+|+.+.+- ..+.++++++ |
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~---lp--~--~~~~-~-l-l~~~e~i~~v~~~~~~~~~~v~~T~~-G 90 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQ---AL--Q--GSKV-S-L-KSREEKIVGAFIREKFGNRLLLATKK-G 90 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHH---HH--T--SEEC-C-C-SSTTCCEEEEEEGGGSCSEEEEEETT-S
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhh---Cc--c--Cccc-c-c-CCCCCEEEEEECCcCCCCEEEEEeCC-C
Confidence 445566665544 4578999999999432110 00 0 0000 0 3 2245678887662 3567888888 9
Q ss_pred EEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEe--CCceEEEEecCCeEEEEECCCCCccCCCCCCCccccee
Q 013365 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQK 169 (444)
Q Consensus 92 ~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~--G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~ 169 (444)
.+.-.-..++-+- . .-...+....+..++.+.. +..+.+++|++|++|.+-....-.+|....... .
T Consensus 91 ~iKr~~l~~~~~~----~---~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~----~ 159 (276)
T 3no0_A 91 YVKKIPLAEFEYK----A---QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ----G 159 (276)
T ss_dssp EEEEEEGGGTTTC----S---TTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----C
T ss_pred EEEEEEHHHhhhh----c---CCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE----E
Confidence 9988865554310 0 0112222334456666543 456799999999999997665544443322211 1
Q ss_pred eecccCCcEEEEEeC--CCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEE--ecCceEEEE
Q 013365 170 LQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVA--CGWRHTISV 245 (444)
Q Consensus 170 v~~~~~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia--~G~~hs~~l 245 (444)
+..-++.+|+.+... ....+++|++|.+.-.-...+-..+.+..... .+ ..+.+++.+. .+....+++
T Consensus 160 i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~-------~i-~~~~~lv~~~~~~~~~~i~~~ 231 (276)
T 3no0_A 160 IKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTE-------VS-GTKDTLVDLIPIKEEVELLIT 231 (276)
T ss_dssp CCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEE-------CC-CSSSCEEEEEEESSEEEEEEE
T ss_pred EccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceE-------EE-cCCCcEEEEEEeCCCCEEEEE
Confidence 222234567665443 45788889999888776544332222111100 01 1123444432 245678899
Q ss_pred eCCCCEEE--EeCCCCCccc
Q 013365 246 SSSGRLYS--YGWSKYGQLG 263 (444)
Q Consensus 246 t~~G~vy~--~G~n~~gqLG 263 (444)
+++|++.. +-.++.-.+|
T Consensus 232 t~~G~~ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 232 TKNGKAFYDKINQKDIPLST 251 (276)
T ss_dssp ETTSCEEEEEEEGGGSCBCC
T ss_pred cCCCeEEEeeeCHHHCCCcC
Confidence 99999988 7554444443
No 27
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=92.86 E-value=7.1 Score=37.63 Aligned_cols=237 Identities=11% Similarity=0.138 Sum_probs=127.9
Q ss_pred EEEEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCC--CCcEEEEEecCC-eeEEEEcCCCEEEEEe
Q 013365 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALD--GHEIVSVTCGAD-HTTAYSESCMQVYSWG 97 (444)
Q Consensus 21 i~~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~--~~~i~~i~~G~~-~~~~l~~~~g~v~~wG 97 (444)
+..++......+.-..||.|.+|-.... ..+..+. ...|..++...+ ..+.-..+ |.|..|-
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~--------------~~~~~~~~h~~~V~~l~~~~~~~l~s~s~d-g~i~vwd 189 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINK--------------KFLLQLSGHDGGVWALKYAHGGILVSGSTD-RTVRVWD 189 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECSTTEEEEEETT-SCEEEEE
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCC--------------cEEEEEeCCCcCEEEEEEcCCCEEEEEeCC-CCEEEEE
Confidence 4555655666666678899999964321 1222222 235777776544 34444555 9999996
Q ss_pred CCCCCccCCCCCCCceeeeeecccCCCCEEEEEeC----CceEEEEecCCeEEEEECCCCCccCCCCCCC---------c
Q 013365 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG----DSHCLAVTVEGEVQSWGRNQNGQLGLGTTED---------S 164 (444)
Q Consensus 98 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G----~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~---------~ 164 (444)
..... ....+. .....|..++.. ....+.-+.||.|+.|-.............. .
T Consensus 190 ~~~~~-----------~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 257 (464)
T 3v7d_B 190 IKKGC-----------CTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257 (464)
T ss_dssp TTTTE-----------EEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred CCCCc-----------EEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence 43211 111111 122356666543 2556667789999999765432221110000 0
Q ss_pred ccceeeecc--cCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecC--c
Q 013365 165 LVPQKLQAF--EGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--R 240 (444)
Q Consensus 165 ~~p~~v~~~--~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~--~ 240 (444)
..+..+..+ ....|..++......+.-..||.|+.|-.... ..+..+......|..++... .
T Consensus 258 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~ 323 (464)
T 3v7d_B 258 ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM--------------KCLYILSGHTDRIYSTIYDHERK 323 (464)
T ss_dssp GCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEEETTTT
T ss_pred CCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------cEEEEecCCCCCEEEEEEcCCCC
Confidence 001111111 12356777777777788888999999964321 11222222234566655543 3
Q ss_pred eEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecCC
Q 013365 241 HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNK 310 (444)
Q Consensus 241 hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~ 310 (444)
..+.-..+|.|+.|-... ++ ....+. .....|..++....+.+.-..||.|..|-...
T Consensus 324 ~l~sg~~dg~i~vwd~~~-~~----------~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 324 RCISASMDTTIRIWDLEN-GE----------LMYTLQ-GHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EEEEEETTSCEEEEETTT-TE----------EEEEEC-CCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred EEEEEeCCCcEEEEECCC-Cc----------EEEEEe-CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 556667888899985422 11 111111 12234777777667777778899999997654
No 28
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=89.61 E-value=13 Score=34.58 Aligned_cols=109 Identities=10% Similarity=0.007 Sum_probs=56.5
Q ss_pred CCCEEEEEeCCc-eEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecc--c---CCcEEEEEeC--CCeEEEEeCC
Q 013365 123 SLRVKQIACGDS-HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAF--E---GVSIKMVAAG--AEHSVAVAED 194 (444)
Q Consensus 123 ~~~i~~Ia~G~~-h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~--~---~~~i~~ia~G--~~h~~~Lt~~ 194 (444)
...|..++.... ..+.-+.+|.|+.|-.... .....+... . ...|..++.. ..+.++-..+
T Consensus 186 ~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d 254 (397)
T 1sq9_A 186 SQFATSVDISERGLIATGFNNGTVQISELSTL-----------RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 254 (397)
T ss_dssp CCCCCEEEECTTSEEEEECTTSEEEEEETTTT-----------EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred CCCceEEEECCCceEEEEeCCCcEEEEECCCC-----------ceeEEEeccccccccCCccceEEECCCCCEEEEEecC
Confidence 335666665533 4455567899999965321 001111110 1 3356666653 3444555566
Q ss_pred ---CCEEEeeCCCCCCcCCCCCCCccceeeeeeeec-------------CCCeEEEEEec--CceEEEEeCCCCEEEEeC
Q 013365 195 ---GELYGWGWGRYGNLGLGDRNDRLIPEKVATVDL-------------QREKMVMVACG--WRHTISVSSSGRLYSYGW 256 (444)
Q Consensus 195 ---G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~-------------~~~~i~~Ia~G--~~hs~~lt~~G~vy~~G~ 256 (444)
|.|+.|-..... .+..+.. ....|..++.. ....+.-..+|.|+.|-.
T Consensus 255 ~~~g~i~i~d~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 255 NSFGCITLYETEFGE--------------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp TTEEEEEEEETTTCC--------------EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CCCceEEEEECCCCc--------------ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 888888643211 1111111 23456666554 345555567888888864
No 29
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=88.27 E-value=15 Score=33.37 Aligned_cols=203 Identities=10% Similarity=0.057 Sum_probs=109.7
Q ss_pred cCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeC---CceEEEEecCCeEEEEECCCCCc
Q 013365 79 GADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQSWGRNQNGQ 155 (444)
Q Consensus 79 G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G---~~h~~~lt~~G~vy~wG~n~~gq 155 (444)
..++.+++|+. |++|.---.+.-. .... .+ ...+++|+.+.+- ....+++|++|.+.-.--..+-+
T Consensus 34 t~~~ll~fT~~-G~v~~~~~~~lp~---~~~~------~l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 34 FTEGLFLVSNR-GRVYWIAGSQALQ---GSKV------SL-KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp TTSCEEEEETT-SEEEEECSHHHHT---SEEC------CC-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CCCEEEEEcCC-CeEEEEEhhhCcc---Cccc------cc-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 34567888888 9999764322110 0000 03 3357788888762 25688999999998887544421
Q ss_pred cCCCCCCCcccceeeecccCCcEEEEEe--CCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEE
Q 013365 156 LGLGTTEDSLVPQKLQAFEGVSIKMVAA--GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMV 233 (444)
Q Consensus 156 lG~~~~~~~~~p~~v~~~~~~~i~~ia~--G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~ 233 (444)
-. .-...+..-++..++.+.. +.++.+++|++|++|.+-....-.+|....... .+ .+. .+++|+
T Consensus 103 ~~-------~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~----~i-~L~-~~d~vv 169 (276)
T 3no0_A 103 KA-------QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ----GI-KLE-KNDETS 169 (276)
T ss_dssp CS-------TTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----CC-CCC-TTCCEE
T ss_pred hc-------CCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE----EE-ccC-CCCEEE
Confidence 10 0011121123334554433 556799999999999986554433332211110 01 111 245666
Q ss_pred EEEec--CceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEE--ecCCCceeEEeCCCcEEE--ee
Q 013365 234 MVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQI--SGGWRHTMAVTSDGKLYG--WG 307 (444)
Q Consensus 234 ~Ia~G--~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i--~~G~~~~~~lt~~g~vy~--wG 307 (444)
.+... ..+.+++|++|.+.-.--..+-..+.+....... ..+..+..+ ..+....++++++|++.- +-
T Consensus 170 ~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i------~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~ 243 (276)
T 3no0_A 170 GLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS------GTKDTLVDLIPIKEEVELLITTKNGKAFYDKIN 243 (276)
T ss_dssp EEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC------CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE------cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeC
Confidence 65543 3467888999988776544443322221110000 112223332 235667888899999887 65
Q ss_pred cCCC
Q 013365 308 WNKF 311 (444)
Q Consensus 308 ~n~~ 311 (444)
.++.
T Consensus 244 ~~~i 247 (276)
T 3no0_A 244 QKDI 247 (276)
T ss_dssp GGGS
T ss_pred HHHC
Confidence 4433
No 30
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=87.94 E-value=16 Score=33.36 Aligned_cols=260 Identities=10% Similarity=0.048 Sum_probs=122.7
Q ss_pred CCCEEEEecCCC------ceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecC---CeeEEEEc
Q 013365 18 FRPVLLISAGAS------HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA---DHTTAYSE 88 (444)
Q Consensus 18 ~~~i~~ia~G~~------~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~---~~~~~l~~ 88 (444)
...|..++-... ..+.-..||.|.+|-..... ....+.. ....|..++... ...+.-..
T Consensus 69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~ 136 (366)
T 3k26_A 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ-----------CIKHYVG-HGNAINELKFHPRDPNLLLSVSK 136 (366)
T ss_dssp TCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC-----------EEEEEES-CCSCEEEEEECSSCTTEEEEEET
T ss_pred CCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce-----------EeeeecC-CCCcEEEEEECCCCCCEEEEEeC
Confidence 345666665433 34445578889988543211 1111221 224577777643 34444555
Q ss_pred CCCEEEEEeCCCCCccCCCCCCCceeeeeec--ccCCCCEEEEEeC--CceEEEEecCCeEEEEECCCCCccC-------
Q 013365 89 SCMQVYSWGWGDFGRLGHGNSSDLFTPLPIK--ALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLG------- 157 (444)
Q Consensus 89 ~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~--~~~~~~i~~Ia~G--~~h~~~lt~~G~vy~wG~n~~gqlG------- 157 (444)
+ |.|+.|-..... ....+. ......|..++.. ..+.+....||.|+.|-......+.
T Consensus 137 d-g~i~iwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 204 (366)
T 3k26_A 137 D-HALRLWNIQTDT-----------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 204 (366)
T ss_dssp T-SCEEEEETTTTE-----------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHT
T ss_pred C-CeEEEEEeecCe-----------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEE
Confidence 6 999999653211 111111 1123468888765 3456666788999999754321110
Q ss_pred CCCCCC--------cccce-eeecccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecC
Q 013365 158 LGTTED--------SLVPQ-KLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQ 228 (444)
Q Consensus 158 ~~~~~~--------~~~p~-~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~ 228 (444)
...... ...|. .........|..++......+.-..+|.|..|-.....+.-............+..+...
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (366)
T 3k26_A 205 YNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS 284 (366)
T ss_dssp CCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS
T ss_pred ecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc
Confidence 000000 00000 000001223445544466777777899999997544322111111111111222222221
Q ss_pred CCeEEEEEe--c--CceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeecccc-CCcEEEEecC--CCceeEEeCCC
Q 013365 229 REKMVMVAC--G--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR-ESFISQISGG--WRHTMAVTSDG 301 (444)
Q Consensus 229 ~~~i~~Ia~--G--~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~-~~~i~~i~~G--~~~~~~lt~~g 301 (444)
...|..++. . ..+.+.-..+|.|+.|-......+ ......+.... ...|..++.. ....+.-..||
T Consensus 285 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 357 (366)
T 3k26_A 285 QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH-------KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 357 (366)
T ss_dssp SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG-------GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc-------cccceEEcccccCCceEEEEeCCCCCeEEEEeCCC
Confidence 222332322 2 445555678899999965331111 00111222211 2346666654 33444456788
Q ss_pred cEEEeec
Q 013365 302 KLYGWGW 308 (444)
Q Consensus 302 ~vy~wG~ 308 (444)
.|+.|-.
T Consensus 358 ~i~iwd~ 364 (366)
T 3k26_A 358 SIWRWDR 364 (366)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 8998853
No 31
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=87.46 E-value=38 Score=37.32 Aligned_cols=230 Identities=15% Similarity=0.160 Sum_probs=105.0
Q ss_pred EEEEEecCC--eeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeC-CceEEEEecCCeEEEEE
Q 013365 73 IVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-DSHCLAVTVEGEVQSWG 149 (444)
Q Consensus 73 i~~i~~G~~--~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G-~~h~~~lt~~G~vy~wG 149 (444)
|..++...+ +.+....+ |.|..|-...... ..+. .....|..++.. ....+....+|.|+.|-
T Consensus 1006 v~~l~~s~dg~~l~s~~~d-g~i~vwd~~~~~~------------~~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A 1006 VRHIQFTADGKTLISSSED-SVIQVWNWQTGDY------------VFLQ-AHQETVKDFRLLQDSRLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp CCCEEECSSSSCEEEECSS-SBEEEEETTTTEE------------ECCB-CCSSCEEEEEECSSSEEEEEESSSEEEEEE
T ss_pred eEEEEECCCCCEEEEEcCC-CEEEEEECCCCce------------EEEe-cCCCcEEEEEEcCCCcEEEEECCCcEEEEE
Confidence 444444332 33333445 8999996543211 1111 122356666544 34566777899999996
Q ss_pred CCCCCccCCCCCCCcccceeeecccCCcEEEEEe--CCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeec
Q 013365 150 RNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAA--GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDL 227 (444)
Q Consensus 150 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~--G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~ 227 (444)
...... ...+.. ....|..++. .....+.-..||.|+.|-......+ ..+..
T Consensus 1072 ~~~~~~-----------~~~~~~-~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~--------------~~l~~ 1125 (1249)
T 3sfz_A 1072 VITGRI-----------ERDFTC-HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL--------------HELKG 1125 (1249)
T ss_dssp TTTTCC-----------CEEEEC-CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCS--------------BCCCC
T ss_pred CCCCce-----------eEEEcc-cCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCccee--------------eeecc
Confidence 533110 011111 1112333332 2334455567788888854321111 11111
Q ss_pred CCCeEEEEEecC--ceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeec---cccCCcEEEEecCCCceeEEeCCCc
Q 013365 228 QREKMVMVACGW--RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLE---ALRESFISQISGGWRHTMAVTSDGK 302 (444)
Q Consensus 228 ~~~~i~~Ia~G~--~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~---~~~~~~i~~i~~G~~~~~~lt~~g~ 302 (444)
....|..++... ...+.-..+|.|+.|-......+. ...|.... ......|..++...+..++++.+|.
T Consensus 1126 h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~------~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~ 1199 (1249)
T 3sfz_A 1126 HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH------SCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGY 1199 (1249)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCC------CCCCCC-------CCSCCCEEEECTTSSCEEEESSS
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE------EeccccccccccccCceEEEEEECCCCCEEEECCCe
Confidence 123455554432 244445678888888643322111 11111110 1112235566655555555555688
Q ss_pred EEEeecCCCcccccCCCCCccCceEeccCCC--cEEecCCeeEEEeCCCCEEEEeC
Q 013365 303 LYGWGWNKFGQVGVGDNVDHCSPVQVKFPLD--QISCGWRHTLAVTERQNVFSWGR 356 (444)
Q Consensus 303 vy~wG~n~~gqlG~g~~~~~~~p~~v~~~~~--~i~~G~~h~~~l~~~g~v~~wG~ 356 (444)
|..|-......+..-. .-..... .++......++...+|.|+.|=-
T Consensus 1200 v~vwd~~~g~~~~~~~--------~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1200 LKWWNVATGDSSQTFY--------TNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp EEEBCSSSCBCCCCCC--------CSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred EEEEECCCCceeeeee--------ccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 8888654322221100 0011112 23333445666778889998843
No 32
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=86.46 E-value=18 Score=32.47 Aligned_cols=225 Identities=9% Similarity=0.032 Sum_probs=111.6
Q ss_pred CCCCEEEEecCCC--ceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccC--CCCcEEEEEecC--CeeEEEEcCC
Q 013365 17 PFRPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSAL--DGHEIVSVTCGA--DHTTAYSESC 90 (444)
Q Consensus 17 ~~~~i~~ia~G~~--~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~--~~~~i~~i~~G~--~~~~~l~~~~ 90 (444)
....|..++...+ ..+.-..||.|+.|-.... .+..+..+ ....+..++... .+.+....+
T Consensus 96 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d- 162 (337)
T 1gxr_A 96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP------------TPRIKAELTSSAPACYALAISPDSKVCFSCCSD- 162 (337)
T ss_dssp TTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--------------EEEEEEECSSSCEEEEEECTTSSEEEEEETT-
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC------------CcceeeecccCCCceEEEEECCCCCEEEEEeCC-
Confidence 3445666665433 3444457888888854321 11111111 123466666543 344444556
Q ss_pred CEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeC--CceEEEEecCCeEEEEECCCCCccCCCCCCCcccce
Q 013365 91 MQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQ 168 (444)
Q Consensus 91 g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~ 168 (444)
|.|+.|-..... ....+.. ....|..++.. ....+..+.+|.|+.|-...... ..
T Consensus 163 g~v~~~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-----------~~ 219 (337)
T 1gxr_A 163 GNIAVWDLHNQT-----------LVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-----------LQ 219 (337)
T ss_dssp SCEEEEETTTTE-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----------EE
T ss_pred CcEEEEeCCCCc-----------eeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce-----------Ee
Confidence 899999643211 1111111 23367777764 34566667899999996533110 01
Q ss_pred eeecccCCcEEEEEeC--CCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEec--CceEEE
Q 013365 169 KLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG--WRHTIS 244 (444)
Q Consensus 169 ~v~~~~~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G--~~hs~~ 244 (444)
.+. ....+..++.. ....++-..+|.|+.|-..... .. .+......|..++.. ..+.+.
T Consensus 220 ~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------------~~---~~~~~~~~v~~~~~~~~~~~l~~ 282 (337)
T 1gxr_A 220 QHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------------KY---QLHLHESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp EEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------------EE---EECCCSSCEEEEEECTTSSEEEE
T ss_pred eec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC------------eE---EEcCCccceeEEEECCCCCEEEE
Confidence 111 12245555443 3445555678888888643211 11 111123356666554 344555
Q ss_pred EeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecC--CCceeEEeCCCcEEEee
Q 013365 245 VSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKLYGWG 307 (444)
Q Consensus 245 lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~wG 307 (444)
...+|.|+.|-......+ .... ....|..++.. ..+.+.-..+|.|+.|-
T Consensus 283 ~~~dg~i~~~~~~~~~~~-----------~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 283 TGKDNLLNAWRTPYGASI-----------FQSK--ESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EETTSEEEEEETTTCCEE-----------EEEE--CSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ecCCCcEEEEECCCCeEE-----------EEec--CCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 667888888864321111 1111 12235555443 33444456777777773
No 33
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=85.29 E-value=22 Score=32.35 Aligned_cols=192 Identities=13% Similarity=0.125 Sum_probs=101.3
Q ss_pred CcEEEEEecCC----eeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCC--ceEEEEecCCe
Q 013365 71 HEIVSVTCGAD----HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGE 144 (444)
Q Consensus 71 ~~i~~i~~G~~----~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~--~h~~~lt~~G~ 144 (444)
..|..|+...+ ..++....+|.|..|-....++ .....+.. ....|..++... .+.+..+.||.
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCCCc
Confidence 56888888765 3444433339999997543221 11112221 233677777653 45666678999
Q ss_pred EEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEe--CCC--eEEEEeCCCCEEEeeCCCCCCcCCCCCCCcccee
Q 013365 145 VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAA--GAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPE 220 (444)
Q Consensus 145 vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~--G~~--h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~ 220 (444)
|..|-..... ...+.. ....|..++. ..+ ..+.-..||.|+.|-.....
T Consensus 110 v~iwd~~~~~------------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------------- 162 (368)
T 3mmy_A 110 AKMWDLSSNQ------------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-------------- 162 (368)
T ss_dssp EEEEETTTTE------------EEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS--------------
T ss_pred EEEEEcCCCC------------ceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc--------------
Confidence 9999654311 111111 2235666664 333 34455678999999532210
Q ss_pred eeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeecccc--CCcEEEEecCCCc----e
Q 013365 221 KVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR--ESFISQISGGWRH----T 294 (444)
Q Consensus 221 ~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~~----~ 294 (444)
.+..+.. ...+..+..-....++.+.++.++.|-...... ....+.... ...+..+...... .
T Consensus 163 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (368)
T 3mmy_A 163 PMMVLQL-PERCYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQNKPTGF 231 (368)
T ss_dssp CSEEEEC-SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred EEEEEec-CCCceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccccccCCCceEEEcccCCCCCCeE
Confidence 1111111 224555555666777888899999886532111 111111111 1123333333332 5
Q ss_pred eEEeCCCcEEEeecCC
Q 013365 295 MAVTSDGKLYGWGWNK 310 (444)
Q Consensus 295 ~~lt~~g~vy~wG~n~ 310 (444)
+.-..+|.|..|-...
T Consensus 232 ~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 232 ALGSIEGRVAIHYINP 247 (368)
T ss_dssp EEEETTSEEEEEESSC
T ss_pred EEecCCCcEEEEecCC
Confidence 5567889998887654
No 34
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=85.29 E-value=19 Score=31.84 Aligned_cols=186 Identities=11% Similarity=0.080 Sum_probs=101.1
Q ss_pred CcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEe---CCceEEEEecCCeEEE
Q 013365 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC---GDSHCLAVTVEGEVQS 147 (444)
Q Consensus 71 ~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~---G~~h~~~lt~~G~vy~ 147 (444)
..|..++....+.+....+ |.|+.|-. + .+..........+..+.. .....+..+.+|.|+.
T Consensus 105 ~~i~~~~~~~~~l~~~~~d-~~i~~~d~---~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 169 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWD-KTAKVWKE---G-----------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL 169 (313)
T ss_dssp SCEEEEEEETTEEEEEETT-SEEEEEET---T-----------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cCEEEEEecCCEEEEEeCC-CCEEEEcC---C-----------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEE
Confidence 4677888867777777777 99999951 1 111111122335656554 4566777788999999
Q ss_pred EECCCCCccCCCCCCCcccceeeecccCCcEEEEEeC-CCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeee
Q 013365 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG-AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVD 226 (444)
Q Consensus 148 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G-~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~ 226 (444)
|-... ....+.......|..++.. ....++...+|.|+.|-.... ..+..+.
T Consensus 170 ~d~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~--------------~~~~~~~ 222 (313)
T 3odt_A 170 WQNDK-------------VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG--------------DVLRTYE 222 (313)
T ss_dssp EETTE-------------EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC--------------CEEEEEE
T ss_pred EecCc-------------eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch--------------hhhhhhh
Confidence 95110 0111111122345554432 223666678899999964321 1122222
Q ss_pred cCCCeEEEEEecCc-eEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCCC-ceeEEeCCCcEE
Q 013365 227 LQREKMVMVACGWR-HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR-HTMAVTSDGKLY 304 (444)
Q Consensus 227 ~~~~~i~~Ia~G~~-hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-~~~~lt~~g~vy 304 (444)
.....|..++...+ ..++...+|.|+.|-.... .....+ ......|..++...+ ..++...+|.|+
T Consensus 223 ~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~-----------~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~dg~i~ 290 (313)
T 3odt_A 223 GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG-----------SLKQVI-TLPAISIWSVDCMSNGDIIVGSSDNLVR 290 (313)
T ss_dssp CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC-----------CEEEEE-ECSSSCEEEEEECTTSCEEEEETTSCEE
T ss_pred cCCceEEEEEEecCCCEEEEecCCEEEEEECCCC-----------ceeEEE-eccCceEEEEEEccCCCEEEEeCCCcEE
Confidence 22345666665433 4556677888988853221 011111 122234666665433 355567899999
Q ss_pred EeecCC
Q 013365 305 GWGWNK 310 (444)
Q Consensus 305 ~wG~n~ 310 (444)
.|-...
T Consensus 291 iw~~~~ 296 (313)
T 3odt_A 291 IFSQEK 296 (313)
T ss_dssp EEESCG
T ss_pred EEeCCC
Confidence 997543
No 35
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=84.25 E-value=22 Score=31.48 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=12.3
Q ss_pred eEEEEeCCCCEEEEeCC
Q 013365 241 HTISVSSSGRLYSYGWS 257 (444)
Q Consensus 241 hs~~lt~~G~vy~~G~n 257 (444)
..++++.+|++|+-...
T Consensus 210 ~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 210 IGVGINSNGEILIADNH 226 (286)
T ss_dssp EEEEECTTCCEEEEECS
T ss_pred cEEEECCCCCEEEEeCC
Confidence 46777888888877643
No 36
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=84.07 E-value=27 Score=32.47 Aligned_cols=219 Identities=13% Similarity=0.029 Sum_probs=114.3
Q ss_pred EeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCC-----CeEEEEeCCCCEEEeeCCC
Q 013365 130 ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA-----EHSVAVAEDGELYGWGWGR 204 (444)
Q Consensus 130 a~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~-----~h~~~Lt~~G~vy~wG~n~ 204 (444)
+...++.+++|+.|++|..-...--..+..... ......+...++++|+.+.... ...+++|++|.+.-.-...
T Consensus 50 ~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G-~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~ 128 (327)
T 3uc1_A 50 CSTHDLILFFTTQGRVYRAKAYDLPEASRTARG-QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTD 128 (327)
T ss_dssp EETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC-EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGG
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC-EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHH
Confidence 456677889999999999875443222211100 0111122223567788876643 4688999999888665333
Q ss_pred CCCcCCCCCCCccceeeeeeeec-CCCeEEE--EEecCceEEEEeCCCCEEEEeCC--CCCcccCCCCCCceeeeeeccc
Q 013365 205 YGNLGLGDRNDRLIPEKVATVDL-QREKMVM--VACGWRHTISVSSSGRLYSYGWS--KYGQLGHGDFKDHLVPCQLEAL 279 (444)
Q Consensus 205 ~gqlG~~~~~~~~~p~~v~~~~~-~~~~i~~--Ia~G~~hs~~lt~~G~vy~~G~n--~~gqLG~~~~~~~~~p~~v~~~ 279 (444)
+-.-. . .-+..+.+ .+..++. +..+..+.+++|++|++|.+--. .--.+|...... ..+...
T Consensus 129 ~~~~~------r---~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv----~~i~L~ 195 (327)
T 3uc1_A 129 FDSNR------S---GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV----QGMRFN 195 (327)
T ss_dssp GCCCC------S---SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE----ESSCCC
T ss_pred hhccc------c---CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe----eeecCC
Confidence 21100 0 01111111 1233433 33466788999999999998766 433333322111 112223
Q ss_pred cCCcEEEEecC--CCceeEEeCCCcEEEeecCCCcccccCCCCCc------cCceEeccCCCcEEecCCeeEEEeCCCCE
Q 013365 280 RESFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDH------CSPVQVKFPLDQISCGWRHTLAVTERQNV 351 (444)
Q Consensus 280 ~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~~gqlG~g~~~~~------~~p~~v~~~~~~i~~G~~h~~~l~~~g~v 351 (444)
.+..|+.+..- ..+.+++|++|.+.-.=..+|-..+.+..-.. ..+..+. ..+..+..+.++++++|.+
T Consensus 196 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~---~~~~~~~~~i~l~T~~G~~ 272 (327)
T 3uc1_A 196 IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVG---ALIVDDDSELYAVTSGGGV 272 (327)
T ss_dssp TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEE---EEEECTTCEEEEEEGGGCE
T ss_pred CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEE---EEEeCCCccEEEEcCCCeE
Confidence 34557665543 34567778888766554333222111100000 0111111 0223356788999999999
Q ss_pred EEEeCCCCCCCCCC
Q 013365 352 FSWGRGTNGQLGHG 365 (444)
Q Consensus 352 ~~wG~n~~gqLG~g 365 (444)
.-+-..+--.+|..
T Consensus 273 ir~~~~~i~~~gR~ 286 (327)
T 3uc1_A 273 IRTAARQVRKAGRQ 286 (327)
T ss_dssp EEEEGGGSCBCCTT
T ss_pred EEEehhhccccCCC
Confidence 88866555555543
No 37
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=83.71 E-value=26 Score=31.99 Aligned_cols=240 Identities=13% Similarity=0.052 Sum_probs=122.2
Q ss_pred CCCEEEEecCCCc--eEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCC--CCcEEEEEec----CCeeEEEEcC
Q 013365 18 FRPVLLISAGASH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALD--GHEIVSVTCG----ADHTTAYSES 89 (444)
Q Consensus 18 ~~~i~~ia~G~~~--~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~--~~~i~~i~~G----~~~~~~l~~~ 89 (444)
...|..++...+. .+.-..||.|.+|=.... ....+..+. ...|..++.. ..+.+....+
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCC------------cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence 3467777755333 333346888998854210 111222222 2457777764 4455555666
Q ss_pred CCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCC----ceEEEEecCCeEEEEECCCCCccCCCCCCCcc
Q 013365 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD----SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSL 165 (444)
Q Consensus 90 ~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~----~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 165 (444)
|.|..|-.... ...+..........|..++... ...+..+.+|.|..|-...... .
T Consensus 79 -g~v~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------~ 138 (379)
T 3jrp_A 79 -GKVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------T 138 (379)
T ss_dssp -SCEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---------C
T ss_pred -CEEEEEEcCCC----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---------e
Confidence 99999954321 0111111122234688887764 3566778899999997543211 1
Q ss_pred cceeeecccCCcEEEEEeC---------------CCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCC
Q 013365 166 VPQKLQAFEGVSIKMVAAG---------------AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQRE 230 (444)
Q Consensus 166 ~p~~v~~~~~~~i~~ia~G---------------~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~ 230 (444)
.+..+. .....|..++.. ....+.-..||.|+.|-.... ......+..+.....
T Consensus 139 ~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~h~~ 207 (379)
T 3jrp_A 139 SPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD----------AQTYVLESTLEGHSD 207 (379)
T ss_dssp CEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETT----------TTEEEEEEEECCCSS
T ss_pred eeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC----------CcceeeEEEEecccC
Confidence 111111 112245555543 345666678999999953221 011112222222234
Q ss_pred eEEEEEecC-----ceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccc--cCCcEEEEecC--CCceeEEeCCC
Q 013365 231 KMVMVACGW-----RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL--RESFISQISGG--WRHTMAVTSDG 301 (444)
Q Consensus 231 ~i~~Ia~G~-----~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~--~~~~i~~i~~G--~~~~~~lt~~g 301 (444)
.|..++... ...+....+|.|+.|-...... .....+... ....|..++.. ....+....+|
T Consensus 208 ~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 278 (379)
T 3jrp_A 208 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG---------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 278 (379)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS---------CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc---------cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC
Confidence 566666553 3455567889999996432110 000111111 22336655543 33444456789
Q ss_pred cEEEeecC
Q 013365 302 KLYGWGWN 309 (444)
Q Consensus 302 ~vy~wG~n 309 (444)
.|+.|=.+
T Consensus 279 ~i~iw~~~ 286 (379)
T 3jrp_A 279 KVTLWKEN 286 (379)
T ss_dssp SEEEEEEE
T ss_pred cEEEEeCC
Confidence 99999654
No 38
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=82.51 E-value=28 Score=31.53 Aligned_cols=200 Identities=13% Similarity=0.084 Sum_probs=94.5
Q ss_pred CCCEEEEecCCC--ceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecC--CeeEEEEcCCCEE
Q 013365 18 FRPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA--DHTTAYSESCMQV 93 (444)
Q Consensus 18 ~~~i~~ia~G~~--~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~--~~~~~l~~~~g~v 93 (444)
...|..++...+ ..+.-..||.|++|-.... .....+..- ...|..++... .+.+....+ |.|
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d-g~i 98 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-----------ERLGTLDGH-TGTIWSIDVDCFTKYCVTGSAD-YSI 98 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTC-----------CEEEEECCC-SSCEEEEEECTTSSEEEEEETT-TEE
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-----------hhhhhhhhc-CCcEEEEEEcCCCCEEEEEeCC-CeE
Confidence 445666665433 3333346888888853321 111122211 23577777653 344555566 999
Q ss_pred EEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCC--ceEEEEecC-----CeEEEEECCCCCccCCCCCCCccc
Q 013365 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVE-----GEVQSWGRNQNGQLGLGTTEDSLV 166 (444)
Q Consensus 94 ~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~--~h~~~lt~~-----G~vy~wG~n~~gqlG~~~~~~~~~ 166 (444)
+.|-...... ...+. ....|..++... ...++...+ |.|+.|-.........-.......
T Consensus 99 ~iwd~~~~~~-----------~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~ 165 (369)
T 3zwl_B 99 KLWDVSNGQC-----------VATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP 165 (369)
T ss_dssp EEEETTTCCE-----------EEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred EEEECCCCcE-----------EEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence 9996432211 11111 233566666543 344455555 888888644322111000000000
Q ss_pred ceeeecc-cCCcEEEEEeC--CCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEec--Cce
Q 013365 167 PQKLQAF-EGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG--WRH 241 (444)
Q Consensus 167 p~~v~~~-~~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G--~~h 241 (444)
...+... ....+..++.. ....++-+.+|.|+.|-.... ...+..+......|..++.. ...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (369)
T 3zwl_B 166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN-------------YEYVDSIDLHEKSISDMQFSPDLTY 232 (369)
T ss_dssp SEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT-------------TEEEEEEECCSSCEEEEEECTTSSE
T ss_pred eeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-------------cEeEEEEecCCCceeEEEECCCCCE
Confidence 1111111 11134444443 335555678888998864321 11222222223456666553 334
Q ss_pred EEEEeCCCCEEEEeC
Q 013365 242 TISVSSSGRLYSYGW 256 (444)
Q Consensus 242 s~~lt~~G~vy~~G~ 256 (444)
.+....+|.|+.|-.
T Consensus 233 l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 233 FITSSRDTNSFLVDV 247 (369)
T ss_dssp EEEEETTSEEEEEET
T ss_pred EEEecCCceEEEEEC
Confidence 455567888888854
No 39
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=81.88 E-value=32 Score=31.78 Aligned_cols=249 Identities=14% Similarity=0.051 Sum_probs=122.2
Q ss_pred CCCCEEEEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCC---------eeEEEE
Q 013365 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD---------HTTAYS 87 (444)
Q Consensus 17 ~~~~i~~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~---------~~~~l~ 87 (444)
-...|..|+......+.-..||.|++|-...... .........+.. ....|..++...+ +.+...
T Consensus 15 h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 15 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hhcCeEEEEecCCeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEec-CCCcEEEEEEecccccCCccccEEEEEc
Confidence 4567888887776666666899999997643210 000111222221 1235666665433 334445
Q ss_pred cCCCEEEEEeCCCCCccCCCCCCCceeeeeecccC----CCCEEEEEeC------Cce-EEEEecCCeEEEEECCC----
Q 013365 88 ESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALH----SLRVKQIACG------DSH-CLAVTVEGEVQSWGRNQ---- 152 (444)
Q Consensus 88 ~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~----~~~i~~Ia~G------~~h-~~~lt~~G~vy~wG~n~---- 152 (444)
.+ |.|+.|-...... ........+.... ...|..++.. ..+ .+..+.+|.|+.|-...
T Consensus 89 ~d-g~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 89 FS-GDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp TT-SCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred CC-CCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence 55 9999986432111 0001122222221 2467777665 344 55567889999996543
Q ss_pred --CCccCCCCCCCcccce-eee------cccCCcEEEEEeCCC-eEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeee
Q 013365 153 --NGQLGLGTTEDSLVPQ-KLQ------AFEGVSIKMVAAGAE-HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKV 222 (444)
Q Consensus 153 --~gqlG~~~~~~~~~p~-~v~------~~~~~~i~~ia~G~~-h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v 222 (444)
...+. ..|. .+. ......|..++...+ ..+.-..+|.|+.|-.... ..+
T Consensus 162 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------------~~~ 220 (397)
T 1sq9_A 162 SNSLTLN-------WSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL--------------RPL 220 (397)
T ss_dssp HHHTTTC-------CCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT--------------EEE
T ss_pred cccceee-------ccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC--------------cee
Confidence 11111 1111 111 112234555554433 4444557888888864321 112
Q ss_pred eeeec---C---CCeEEEEEec--CceEEEEeCC---CCEEEEeCCCCCcccCCCCCCceeeeeeccc------------
Q 013365 223 ATVDL---Q---REKMVMVACG--WRHTISVSSS---GRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL------------ 279 (444)
Q Consensus 223 ~~~~~---~---~~~i~~Ia~G--~~hs~~lt~~---G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~------------ 279 (444)
..+.. . ...|..++.. ..+.++-..+ |.|+.|-...... ...+...
T Consensus 221 ~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 289 (397)
T 1sq9_A 221 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-----------IGSLSVPTHSSQASLGEFA 289 (397)
T ss_dssp EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-----------EEEECBC--------CCBS
T ss_pred EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc-----------cceeccCcccccccccccc
Confidence 22221 1 3356555543 3344444556 7788886432111 1111110
Q ss_pred cCCcEEEEecC--CCceeEEeCCCcEEEeecCC
Q 013365 280 RESFISQISGG--WRHTMAVTSDGKLYGWGWNK 310 (444)
Q Consensus 280 ~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~ 310 (444)
....|..++.. ....+.-..+|.|+.|-...
T Consensus 290 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp BSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 23346666654 33444456789999997543
No 40
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=81.71 E-value=29 Score=31.18 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=12.1
Q ss_pred CCceeEEeCCCcEEEeec
Q 013365 291 WRHTMAVTSDGKLYGWGW 308 (444)
Q Consensus 291 ~~~~~~lt~~g~vy~wG~ 308 (444)
..|++++. +++||++|-
T Consensus 192 ~~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 192 KNHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred hcceEEEE-CCEEEEEeC
Confidence 45666655 788999984
No 41
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=81.05 E-value=35 Score=31.64 Aligned_cols=106 Identities=10% Similarity=0.155 Sum_probs=57.4
Q ss_pred CEEEEEeC--CceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCCC-eEEEEeCCCCEEEee
Q 013365 125 RVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE-HSVAVAEDGELYGWG 201 (444)
Q Consensus 125 ~i~~Ia~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~-h~~~Lt~~G~vy~wG 201 (444)
.|..++.. ....+....+|.|+.|-..... ....+.. ....|..++...+ ..+....+|.|+.|-
T Consensus 249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~l~~~~~d~~i~i~d 316 (425)
T 1r5m_A 249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-----------SQNCFYG-HSQSIVSASWVGDDKVISCSMDGSVRLWS 316 (425)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEECSSSBS-----------CSEEECC-CSSCEEEEEEETTTEEEEEETTSEEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-----------cceEecC-CCccEEEEEECCCCEEEEEeCCCcEEEEE
Confidence 56666553 3455666678999999543210 0111111 1234555554332 666667889999996
Q ss_pred CCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEec--CceEEEEeCCCCEEEEeC
Q 013365 202 WGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG--WRHTISVSSSGRLYSYGW 256 (444)
Q Consensus 202 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G--~~hs~~lt~~G~vy~~G~ 256 (444)
.... ..+..+......|..++.. ....++-..+|.|+.|-.
T Consensus 317 ~~~~--------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 317 LKQN--------------TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp TTTT--------------EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred CCCC--------------cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 4221 1222222223456666554 345555667888888864
No 42
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=79.54 E-value=44 Score=31.84 Aligned_cols=242 Identities=10% Similarity=0.081 Sum_probs=124.4
Q ss_pred CCCEEEEecCCC-ceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEec---C-CeeEEEEcCCCE
Q 013365 18 FRPVLLISAGAS-HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG---A-DHTTAYSESCMQ 92 (444)
Q Consensus 18 ~~~i~~ia~G~~-~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G---~-~~~~~l~~~~g~ 92 (444)
...|..++.... ..+.-..||.|.+|-..... ....+.. ....|..++.. . .+.+.-..+ |.
T Consensus 162 ~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~-----------~~~~~~~-h~~~v~~l~~~~~~~~~~l~s~s~d-~~ 228 (464)
T 3v7d_B 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC-----------CTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRD-NT 228 (464)
T ss_dssp SSCEEEEEECSTTEEEEEETTSCEEEEETTTTE-----------EEEEECC-CSSCEEEEEEEESSSCEEEEEEETT-SC
T ss_pred CcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCc-----------EEEEECC-CCCccEEEEEecCCCCCEEEEEcCC-Cc
Confidence 446677765433 44444578888888543211 1111111 12345555543 2 344445556 99
Q ss_pred EEEEeCCCCCccCCCCCC---C------ceeeeeeccc--CCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCC
Q 013365 93 VYSWGWGDFGRLGHGNSS---D------LFTPLPIKAL--HSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTT 161 (444)
Q Consensus 93 v~~wG~n~~gqlG~~~~~---~------~~~p~~v~~~--~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~ 161 (444)
|..|-............. . ...+..+..+ ....|..++......+.-+.||.|+.|-......
T Consensus 229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~------ 302 (464)
T 3v7d_B 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC------ 302 (464)
T ss_dssp EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE------
T ss_pred EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE------
Confidence 999975543222110000 0 0000011111 2236777777777788888899999996532110
Q ss_pred CCcccceeeecccCCcEEEEEeC--CCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecC
Q 013365 162 EDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW 239 (444)
Q Consensus 162 ~~~~~p~~v~~~~~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~ 239 (444)
...+.. ....|..++.. ....+.-..||.|+.|-... ...+..+......|..++...
T Consensus 303 -----~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~--------------~~~~~~~~~h~~~v~~~~~~~ 362 (464)
T 3v7d_B 303 -----LYILSG-HTDRIYSTIYDHERKRCISASMDTTIRIWDLEN--------------GELMYTLQGHTALVGLLRLSD 362 (464)
T ss_dssp -----EEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECS
T ss_pred -----EEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--------------CcEEEEEeCCCCcEEEEEEcC
Confidence 011111 12245555543 34566667889999985322 112223333345677777777
Q ss_pred ceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecCC
Q 013365 240 RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNK 310 (444)
Q Consensus 240 ~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~ 310 (444)
.+.+.-..+|.|..|-.....+ ...........+..++.... .++...+|.|+.|=...
T Consensus 363 ~~l~s~s~dg~v~vwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~l~~~~dg~i~iwd~~~ 421 (464)
T 3v7d_B 363 KFLVSAAADGSIRGWDANDYSR-----------KFSYHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLRS 421 (464)
T ss_dssp SEEEEEETTSEEEEEETTTCCE-----------EEEEECTTCCCEEEEEECSS-EEEEEETTEEEEEETTT
T ss_pred CEEEEEeCCCcEEEEECCCCce-----------eeeecCCCCccEEEEEeCCC-EEEEecCCeEEEEECCC
Confidence 7888888999999996543211 11111112222444444433 44444588888886543
No 43
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=79.40 E-value=18 Score=33.46 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=12.9
Q ss_pred CceEEEEecCCeEEEEEC
Q 013365 133 DSHCLAVTVEGEVQSWGR 150 (444)
Q Consensus 133 ~~h~~~lt~~G~vy~wG~ 150 (444)
..|++++ .+++||.+|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 3566666 6889999995
No 44
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=76.96 E-value=27 Score=28.08 Aligned_cols=109 Identities=11% Similarity=0.139 Sum_probs=60.9
Q ss_pred CCCEEEEEeCC-ceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeC-CCeEEEEeCCCCEEEe
Q 013365 123 SLRVKQIACGD-SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG-AEHSVAVAEDGELYGW 200 (444)
Q Consensus 123 ~~~i~~Ia~G~-~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G-~~h~~~Lt~~G~vy~w 200 (444)
....+++.|-. .+.+-+..||.|-.-.... +...--.+.... ..++.|.|- ..+.+++..+|+||.-
T Consensus 29 ~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~----------~~~s~lei~sv~-~G~V~L~g~~sg~yL~mn~~G~l~Gs 97 (142)
T 3p6j_A 29 GNGEVLLKSTETGQYLRINPDGTVDGTRDRS----------DTHIQFQISPEG-NGEVLLKSTETGQYLRINPDGTVDGT 97 (142)
T ss_dssp STTCEEEEETTTCCEEEECTTSBEEEECCTT----------CGGGCEEEEEEE-TTEEEEEETTTTEEEEECTTSBEEEE
T ss_pred cCcEEEEEEeCCCEEEEECCCCCEeeecCCC----------CCceEEEEEEcc-CCEEEEEEecCCEEEeECCCCCEeec
Confidence 44788999876 6777788899998653211 111111222211 247777765 5788899999999964
Q ss_pred eCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEE
Q 013365 201 GWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSY 254 (444)
Q Consensus 201 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~vy~~ 254 (444)
-. ..+.....++........-+..+..| ..++++++|++|.-
T Consensus 98 ~~----------~t~ecsflEi~~en~y~v~i~g~~sg--~YLamnk~Grlygs 139 (142)
T 3p6j_A 98 RD----------RSDTHIQFQISPEGNGEVLLKSTETG--QYLRINPDGTVDGT 139 (142)
T ss_dssp CC----------TTCGGGCEEEEECSTTCEEEEETTTC--CEEEECTTSBEEEE
T ss_pred cc----------CCCCceEEEEEeecCcEEEEEEecCC--EEEEECCCcCCccC
Confidence 21 11112222222222111122222233 47899999999963
No 45
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=76.10 E-value=40 Score=29.55 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=11.6
Q ss_pred CeeEEEeCCCCEEEEeC
Q 013365 340 RHTLAVTERQNVFSWGR 356 (444)
Q Consensus 340 ~h~~~l~~~g~v~~wG~ 356 (444)
-+.++++.+|.+|.-..
T Consensus 274 ~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 274 PHGITFGKDGSVWFALK 290 (300)
T ss_dssp CCCEEECTTSCEEEECS
T ss_pred cceeEeCCCCCEEEEcc
Confidence 46677777888776543
No 46
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=75.47 E-value=42 Score=29.51 Aligned_cols=266 Identities=13% Similarity=0.044 Sum_probs=133.9
Q ss_pred CCCCEEEEecC-CCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEec--CCeeEEEEcCCCEE
Q 013365 17 PFRPVLLISAG-ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQV 93 (444)
Q Consensus 17 ~~~~i~~ia~G-~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G--~~~~~~l~~~~g~v 93 (444)
-...|..|+.- ....+.-..||.|.+|-.... .....+... ...|..++.. ..+.+.-..+ |.|
T Consensus 17 h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~-----------~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-g~i 83 (313)
T 3odt_A 17 HDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQ-----------WLGTVVYTG-QGFLNSVCYDSEKELLLFGGKD-TMI 83 (313)
T ss_dssp CSSCEEEEEEEETTEEEEEETTSEEEEEEESSS-----------EEEEEEEEC-SSCEEEEEEETTTTEEEEEETT-SCE
T ss_pred CCCCcEEEEecCCCEEEEEEcCCcEEEEECCCC-----------EEEEEeecC-CccEEEEEECCCCCEEEEecCC-CeE
Confidence 34567777752 233444557899999964321 111122211 2345555543 3344444555 888
Q ss_pred EEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecc
Q 013365 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAF 173 (444)
Q Consensus 94 ~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~ 173 (444)
..|-...... ..+..........|..++......+..+.+|.|+.|-. + .+......
T Consensus 84 ~~~~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~---~-----------~~~~~~~~ 140 (313)
T 3odt_A 84 NGVPLFATSG---------EDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKE---G-----------SLVYNLQA 140 (313)
T ss_dssp EEEETTCCTT---------SCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEET---T-----------EEEEEEEC
T ss_pred EEEEeeecCC---------CCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcC---C-----------cEEEeccc
Confidence 8875432210 01111111123468888887777888889999999951 0 01111111
Q ss_pred cCCcEEEEEe---CCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeec-CCCeEEEEEec-CceEEEEeCC
Q 013365 174 EGVSIKMVAA---GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDL-QREKMVMVACG-WRHTISVSSS 248 (444)
Q Consensus 174 ~~~~i~~ia~---G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~-~~~~i~~Ia~G-~~hs~~lt~~ 248 (444)
....|..+.. .....+....+|.|+.|-.. ..+..+.. ....|..++.. ....++-..+
T Consensus 141 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d 204 (313)
T 3odt_A 141 HNASVWDAKVVSFSENKFLTASADKTIKLWQND----------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSND 204 (313)
T ss_dssp CSSCEEEEEEEETTTTEEEEEETTSCEEEEETT----------------EEEEEECSSCSSCEEEEEEEETTEEEEEETT
T ss_pred CCCceeEEEEccCCCCEEEEEECCCCEEEEecC----------------ceEEEEeccCcccEEEEEEcCCCeEEEccCC
Confidence 1224544443 56667777889999999411 11111111 23345444432 2235566788
Q ss_pred CCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCCC-ceeEEeCCCcEEEeecCCCcccccCCCCCccCceE
Q 013365 249 GRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR-HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQ 327 (444)
Q Consensus 249 G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-~~~~lt~~g~vy~wG~n~~gqlG~g~~~~~~~p~~ 327 (444)
|.|+.|-...... ...+. .....|..++.... ..+....+|.|+.|-....-.+ ..
T Consensus 205 g~i~i~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-----------~~ 261 (313)
T 3odt_A 205 GLIKLVDMHTGDV-----------LRTYE-GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLK-----------QV 261 (313)
T ss_dssp SEEEEEETTTCCE-----------EEEEE-CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEE-----------EE
T ss_pred CeEEEEECCchhh-----------hhhhh-cCCceEEEEEEecCCCEEEEecCCEEEEEECCCCcee-----------EE
Confidence 8899986432111 11111 12234666665433 4555578899999964332111 11
Q ss_pred eccCC---CcEEec-CCeeEEEeCCCCEEEEeCC
Q 013365 328 VKFPL---DQISCG-WRHTLAVTERQNVFSWGRG 357 (444)
Q Consensus 328 v~~~~---~~i~~G-~~h~~~l~~~g~v~~wG~n 357 (444)
+.... ..++.. ....++...+|.|+.|=.+
T Consensus 262 ~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 262 ITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EECSSSCEEEEEECTTSCEEEEETTSCEEEEESC
T ss_pred EeccCceEEEEEEccCCCEEEEeCCCcEEEEeCC
Confidence 11111 133332 2235566778888888653
No 47
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=75.33 E-value=52 Score=30.49 Aligned_cols=220 Identities=11% Similarity=0.012 Sum_probs=115.8
Q ss_pred ecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCC--eeeccCCCCcEEEEEecC-----CeeEEEEcCCCEEEEEe
Q 013365 25 SAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP--TQLSALDGHEIVSVTCGA-----DHTTAYSESCMQVYSWG 97 (444)
Q Consensus 25 a~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P--~~v~~~~~~~i~~i~~G~-----~~~~~l~~~~g~v~~wG 97 (444)
+....+.+++++.|++|..--..--. ......-.| ..++.-++.+|+.+.... .+.++++++ |.+.-.-
T Consensus 50 ~~t~d~ll~fT~~Gr~y~~~~~~lp~---~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~-G~iKr~~ 125 (327)
T 3uc1_A 50 CSTHDLILFFTTQGRVYRAKAYDLPE---ASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRN-GLVKKSK 125 (327)
T ss_dssp EETTSEEEEEETTSEEEEEEGGGSCB---CCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETT-SEEEEEE
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHCcC---CCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCC-CEEEEeE
Confidence 45566778899999999664322111 101111111 123333457788876654 467778887 9888776
Q ss_pred CCCCCccCCCCCCCceeeeeecccCCCCEEEE--EeCCceEEEEecCCeEEEEECC--CCCccCCCCCCCcccceeeecc
Q 013365 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRN--QNGQLGLGTTEDSLVPQKLQAF 173 (444)
Q Consensus 98 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I--a~G~~h~~~lt~~G~vy~wG~n--~~gqlG~~~~~~~~~p~~v~~~ 173 (444)
..++-.... .-...+....+..++.+ +.+.++.+++|++|++|.+-.. .--.+|...... ..+..-
T Consensus 126 l~~~~~~~r------~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv----~~i~L~ 195 (327)
T 3uc1_A 126 LTDFDSNRS------GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV----QGMRFN 195 (327)
T ss_dssp GGGGCCCCS------SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE----ESSCCC
T ss_pred HHHhhcccc------CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe----eeecCC
Confidence 444321100 01111222234455544 3466789999999999999876 443344332221 112223
Q ss_pred cCCcEEEEEeC--CCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEE--EecCceEEEEeCCC
Q 013365 174 EGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMV--ACGWRHTISVSSSG 249 (444)
Q Consensus 174 ~~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~I--a~G~~hs~~lt~~G 249 (444)
++..|+.+..- ..+.+++|++|.+.-.-...+-..+.+... .....+...+..++.+ ..+....++++++|
T Consensus 196 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G-----~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G 270 (327)
T 3uc1_A 196 IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG-----VLTVMYDRRRGRLVGALIVDDDSELYAVTSGG 270 (327)
T ss_dssp TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC-----EESSCCCTTTCSEEEEEEECTTCEEEEEEGGG
T ss_pred CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc-----EEEEEecCCCCeEEEEEEeCCCccEEEEcCCC
Confidence 45677776654 346888899997765543332211111000 0000111111233333 23567888999999
Q ss_pred CEEEEeCCCCCccc
Q 013365 250 RLYSYGWSKYGQLG 263 (444)
Q Consensus 250 ~vy~~G~n~~gqLG 263 (444)
++.-+-...--.+|
T Consensus 271 ~~ir~~~~~i~~~g 284 (327)
T 3uc1_A 271 GVIRTAARQVRKAG 284 (327)
T ss_dssp CEEEEEGGGSCBCC
T ss_pred eEEEEehhhccccC
Confidence 98877554433333
No 48
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=75.23 E-value=54 Score=30.62 Aligned_cols=148 Identities=9% Similarity=0.009 Sum_probs=85.1
Q ss_pred EEEEEecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCC--ceEEEEecCCeEEEEEC
Q 013365 73 IVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWGR 150 (444)
Q Consensus 73 i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~--~h~~~lt~~G~vy~wG~ 150 (444)
+..+.......++...+ +.|+.|-..... ....+.......|..|+... .+.++-+.+|.|+.|-.
T Consensus 96 ~~~~~~s~~~l~~~~~d-~~v~lw~~~~~~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALE-RNVYVWNADSGS-----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp CBCEEECTTSEEEEEET-TEEEEEETTTCC-----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEeecCCCEEEEECC-CeEEEeeCCCCc-----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 33466556777788888 999999754321 11112221344677777643 45566677999999965
Q ss_pred CCCCccCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCC
Q 013365 151 NQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQRE 230 (444)
Q Consensus 151 n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~ 230 (444)
..... ...+. .....|..++......+.-..+|.|+.|-....+. .+..+.....
T Consensus 164 ~~~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------~~~~~~~~~~ 218 (401)
T 4aez_A 164 ESQTK-----------LRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH-------------QIGTLQGHSS 218 (401)
T ss_dssp TTCCE-----------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC-------------EEEEEECCSS
T ss_pred cCCeE-----------EEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc-------------eeeEEcCCCC
Confidence 33211 11111 12335777777667777778899999996432111 1112222234
Q ss_pred eEEEEEec--CceEEEEeCCCCEEEEeCC
Q 013365 231 KMVMVACG--WRHTISVSSSGRLYSYGWS 257 (444)
Q Consensus 231 ~i~~Ia~G--~~hs~~lt~~G~vy~~G~n 257 (444)
.|..++.. ..+.+.-..+|.|+.|-..
T Consensus 219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 219 EVCGLAWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence 56666553 3355556678899998643
No 49
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=73.55 E-value=56 Score=30.00 Aligned_cols=175 Identities=11% Similarity=0.046 Sum_probs=93.9
Q ss_pred EEecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeC-----CceEEEEecCCeEEEEEC
Q 013365 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGR 150 (444)
Q Consensus 76 i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G-----~~h~~~lt~~G~vy~wG~ 150 (444)
++.+.++.+++++. |.+|.+-..+.-..+.... -......+....+++|+.+... ..+.+++|++|.++-.-.
T Consensus 54 ~~~~~~~ll~~T~~-G~~~~~~~~~ip~~~r~~~-G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l 131 (312)
T 1suu_A 54 CVNTHDYLFMISNE-GKLYLINAYEIKDSSRASK-GQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFES 131 (312)
T ss_dssp EEETTCEEEEEETT-SEEEEEEGGGSCC--------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECC-CeEEEEEHHHCCCCCccCC-CcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEH
Confidence 45566788888888 9999987543322221110 0111112333356678877654 456899999999999875
Q ss_pred CCCCccCCCCCCCcccceeeecccCCcEEEEE--eCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecC
Q 013365 151 NQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVA--AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQ 228 (444)
Q Consensus 151 n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia--~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~ 228 (444)
..+-... ..-. ..+..-++..++.+. .+..+.+++|++|.++-+-....-..|..... .+.-.+. .
T Consensus 132 ~~~~~~r----~~G~--~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G-----v~~i~L~-~ 199 (312)
T 1suu_A 132 TDFKAVK----SRGV--IVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG-----VCGMKLK-E 199 (312)
T ss_dssp GGGCC--------CE--ECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC-----EECCCCC-T
T ss_pred HHhhccC----CCcE--EEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC-----eEeEEeC-C
Confidence 4431110 0000 011111233454443 35678999999999998876553333321111 1111111 1
Q ss_pred CCeEEEEEe--cCceEEEEeCCCCEEEEeCCCCCcccC
Q 013365 229 REKMVMVAC--GWRHTISVSSSGRLYSYGWSKYGQLGH 264 (444)
Q Consensus 229 ~~~i~~Ia~--G~~hs~~lt~~G~vy~~G~n~~gqLG~ 264 (444)
+..|+.+.. ...+.++++++|.+...--..+-..+.
T Consensus 200 ~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R 237 (312)
T 1suu_A 200 GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKR 237 (312)
T ss_dssp TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred CCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCC
Confidence 345555443 345678888999877766655544443
No 50
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=73.21 E-value=47 Score=29.03 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=11.3
Q ss_pred eEEEEeCCCCEEEEeC
Q 013365 241 HTISVSSSGRLYSYGW 256 (444)
Q Consensus 241 hs~~lt~~G~vy~~G~ 256 (444)
+.++++.+|++|....
T Consensus 186 ~~i~~~~~g~l~v~~~ 201 (299)
T 2z2n_A 186 VGITKGNDDALWFVEI 201 (299)
T ss_dssp EEEEECTTSSEEEEET
T ss_pred eeEEECCCCCEEEEcc
Confidence 4567777888887653
No 51
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=72.84 E-value=93 Score=32.25 Aligned_cols=243 Identities=13% Similarity=0.057 Sum_probs=122.0
Q ss_pred CCCEEEEecCC--CceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCC--CCcEEEEEec----CCeeEEEEcC
Q 013365 18 FRPVLLISAGA--SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALD--GHEIVSVTCG----ADHTTAYSES 89 (444)
Q Consensus 18 ~~~i~~ia~G~--~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~--~~~i~~i~~G----~~~~~~l~~~ 89 (444)
...|..++... ...+.-..||.|.+|-.... ....+..+. ...|..++.. ..+.+....|
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~------------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D 76 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCC------------CCccceeccCCcCceEEEEecCCCCCCEEEEEeCC
Confidence 34667776543 33444457999999953210 111222222 2357777764 3445555666
Q ss_pred CCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCC----ceEEEEecCCeEEEEECCCCCccCCCCCCCcc
Q 013365 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD----SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSL 165 (444)
Q Consensus 90 ~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~----~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 165 (444)
|.|+.|-.... ...+..........|..++... ...+..+.+|.|+.|-.......
T Consensus 77 -g~I~vwd~~~~----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~--------- 136 (753)
T 3jro_A 77 -GKVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT--------- 136 (753)
T ss_dssp -SCEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC---------
T ss_pred -CeEEEEECCCC----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc---------
Confidence 99999964321 1111222222334788887764 45667788999999975432110
Q ss_pred cceeeecccCCcEEEEEeC---------------CCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCC
Q 013365 166 VPQKLQAFEGVSIKMVAAG---------------AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQRE 230 (444)
Q Consensus 166 ~p~~v~~~~~~~i~~ia~G---------------~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~ 230 (444)
....+.. ....|..++.. ....+.-..||.|+.|-.... ......+..+.....
T Consensus 137 ~~~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~----------~~~~~~~~~~~~h~~ 205 (753)
T 3jro_A 137 SPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD----------AQTYVLESTLEGHSD 205 (753)
T ss_dssp CCEEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT----------TTEEEEEEEECCCSS
T ss_pred ceeEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC----------cccceeeeeecCCCC
Confidence 1111111 12245555543 345566678899999853221 011112222222244
Q ss_pred eEEEEEecC-----ceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEe--cCCCceeEEeCCCcE
Q 013365 231 KMVMVACGW-----RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQIS--GGWRHTMAVTSDGKL 303 (444)
Q Consensus 231 ~i~~Ia~G~-----~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~--~G~~~~~~lt~~g~v 303 (444)
.|..++... ...+.-..+|.|+.|-....... ......... .....|..++ ....+.+.-..+|.|
T Consensus 206 ~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~------~~~~~~~~~-~~~~~v~~l~~spdg~~l~s~s~Dg~I 278 (753)
T 3jro_A 206 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP------WKKTLLKEE-KFPDVLWRASWSLSGNVLALSGGDNKV 278 (753)
T ss_dssp CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC------CBCCBSSSS-CCSSCCCCEEECTTTCCEEEECSSSCE
T ss_pred cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc------ceeEEeccC-CCCCceEEEEEcCCCCEEEEEcCCCEE
Confidence 677776653 34555668899999964332100 000000000 0111233333 333444445688999
Q ss_pred EEeecCC
Q 013365 304 YGWGWNK 310 (444)
Q Consensus 304 y~wG~n~ 310 (444)
+.|-.+.
T Consensus 279 ~vwd~~~ 285 (753)
T 3jro_A 279 TLWKENL 285 (753)
T ss_dssp ECCBCCS
T ss_pred EEEecCC
Confidence 9997654
No 52
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=72.78 E-value=46 Score=28.74 Aligned_cols=15 Identities=27% Similarity=0.384 Sum_probs=9.6
Q ss_pred eEEEEeCCCCEEEee
Q 013365 187 HSVAVAEDGELYGWG 201 (444)
Q Consensus 187 h~~~Lt~~G~vy~wG 201 (444)
+.++++.+|++|+..
T Consensus 70 ~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 70 QGLAVDGAGTVYVTD 84 (270)
T ss_dssp CCEEECTTCCEEEEE
T ss_pred ceeEECCCCCEEEEc
Confidence 456666677777654
No 53
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=71.54 E-value=63 Score=29.76 Aligned_cols=191 Identities=12% Similarity=0.080 Sum_probs=88.3
Q ss_pred cEEEEEecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCC--ceEEEEecCCeEEEEE
Q 013365 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWG 149 (444)
Q Consensus 72 ~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~--~h~~~lt~~G~vy~wG 149 (444)
.|..++...+..++....+|.|..|-......+ ........-....|..|+... .+.+.-..+|.|..|-
T Consensus 96 ~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~--------~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd 167 (357)
T 4g56_B 96 GVTDVAWVSEKGILVASDSGAVELWEILEKESL--------LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167 (357)
T ss_dssp CEEEEEEETTTEEEEEETTSCEEEC----------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred CEEEEEEcCCCCEEEEECCCEEEEeecccccee--------EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 366666544433333333488888842211110 000000001123577776654 3444556789999995
Q ss_pred CCCCCccCCCCCCCcccceeeeccc--CCcEEEEEeC---CCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeee
Q 013365 150 RNQNGQLGLGTTEDSLVPQKLQAFE--GVSIKMVAAG---AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVAT 224 (444)
Q Consensus 150 ~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~ia~G---~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~ 224 (444)
.+.. ..+..+. ...|..|+.. ....+....||.|..|-......+ ....
T Consensus 168 ~~~~--------------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~------------~~~~ 221 (357)
T 4g56_B 168 LSQK--------------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA------------TRID 221 (357)
T ss_dssp TTTT--------------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB------------CBCC
T ss_pred CCCC--------------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee------------eeee
Confidence 4321 1122221 2356666653 234555678899999943221110 0000
Q ss_pred eecCCCeEEEEEec---CceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCC---CceeEEe
Q 013365 225 VDLQREKMVMVACG---WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW---RHTMAVT 298 (444)
Q Consensus 225 ~~~~~~~i~~Ia~G---~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~---~~~~~lt 298 (444)
.......+..++.. ....+.-..++.|+.|-... +++ ...+. .....|..|+... ...+.-.
T Consensus 222 ~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-~~~----------~~~~~-~~~~~v~~l~~sp~~~~~lasgs 289 (357)
T 4g56_B 222 FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN-PDS----------AQTSA-VHSQNITGLAYSYHSSPFLASIS 289 (357)
T ss_dssp CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC-GGG----------CEEEC-CCSSCEEEEEECSSSSCCEEEEE
T ss_pred eccccccccchhhhhcccceEEEeecccceeEEECCC-CcE----------eEEEe-ccceeEEEEEEcCCCCCEEEEEe
Confidence 11112245555542 22233346788888885322 110 11111 1223466666532 2233346
Q ss_pred CCCcEEEeec
Q 013365 299 SDGKLYGWGW 308 (444)
Q Consensus 299 ~~g~vy~wG~ 308 (444)
.||.|+.|=.
T Consensus 290 ~D~~i~iwd~ 299 (357)
T 4g56_B 290 EDCTVAVLDA 299 (357)
T ss_dssp TTSCEEEECT
T ss_pred CCCEEEEEEC
Confidence 7899999954
No 54
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=71.42 E-value=70 Score=30.26 Aligned_cols=201 Identities=10% Similarity=0.080 Sum_probs=96.4
Q ss_pred ceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecC---CeeEEEEcCCCEEEEEeCCCCCccCC
Q 013365 30 HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA---DHTTAYSESCMQVYSWGWGDFGRLGH 106 (444)
Q Consensus 30 ~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~---~~~~~l~~~~g~v~~wG~n~~gqlG~ 106 (444)
+.+.-..||.|.+|-.+...... ....+..........|..|+... ...+....+ |.|+.|-......
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d-g~i~i~d~~~~~~--- 266 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD-QKLMIWDTRNNNT--- 266 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT-SEEEEEETTCSCS---
T ss_pred eEEEEeCCCeEEEEeCCCCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC-CeEEEEECCCCCC---
Confidence 34444568888888765422110 01111111111223577777643 334444556 9999997543211
Q ss_pred CCCCCceeeeeecccCCCCEEEEEeCCc---eEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEe
Q 013365 107 GNSSDLFTPLPIKALHSLRVKQIACGDS---HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAA 183 (444)
Q Consensus 107 ~~~~~~~~p~~v~~~~~~~i~~Ia~G~~---h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~ 183 (444)
..+..........|..|+.... ..+.-..+|.|..|-.....+. ...+. .....|..|+.
T Consensus 267 ------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~----------~~~~~-~h~~~v~~i~~ 329 (430)
T 2xyi_A 267 ------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK----------LHSFE-SHKDEIFQVQW 329 (430)
T ss_dssp ------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC----------SEEEE-CCSSCEEEEEE
T ss_pred ------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC----------eEEee-cCCCCEEEEEE
Confidence 0111111122336777776532 3445567899999975432210 11111 11235666665
Q ss_pred CC---CeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCc---eEEEEeCCCCEEEEeC
Q 013365 184 GA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR---HTISVSSSGRLYSYGW 256 (444)
Q Consensus 184 G~---~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~---hs~~lt~~G~vy~~G~ 256 (444)
.. ...+.-..+|.|..|-....+..-.........|..+.........|..++-... ..+....+|.|..|-.
T Consensus 330 sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 330 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 43 3345556789999997544322110000000012222222222345666665433 4455667788888853
No 55
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=71.04 E-value=54 Score=28.75 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=8.5
Q ss_pred EEEEeCCCCEEEee
Q 013365 188 SVAVAEDGELYGWG 201 (444)
Q Consensus 188 ~~~Lt~~G~vy~wG 201 (444)
.++++.+|++|+..
T Consensus 211 ~i~~d~~G~l~v~~ 224 (286)
T 1q7f_A 211 GVGINSNGEILIAD 224 (286)
T ss_dssp EEEECTTCCEEEEE
T ss_pred EEEECCCCCEEEEe
Confidence 45566666666654
No 56
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=70.41 E-value=59 Score=28.94 Aligned_cols=245 Identities=12% Similarity=0.106 Sum_probs=112.9
Q ss_pred CCCEEEEecCCCceEEEEc-CCeE-EEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCCeeEEEEcCCCEEEE
Q 013365 18 FRPVLLISAGASHSVALLS-GNIV-CSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYS 95 (444)
Q Consensus 18 ~~~i~~ia~G~~~~~~l~~-~g~v-~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~ 95 (444)
+.+++-...+.....+++. +|++ |.+..... ..+.-+....+-++.- ++.....+++.+...+|.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~-----------~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~ 70 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG-----------WECNSVAATKAGEILF--SYSKGAKMITRDGRELWN 70 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT-----------CCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc-----------CCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEE
Confidence 3456666667777777776 7765 44332110 1122222222222221 334444555544224555
Q ss_pred EeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeC-CceEEEEecCCe-EEEEECCCCCccCCCCCCCcccceeeecc
Q 013365 96 WGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-DSHCLAVTVEGE-VQSWGRNQNGQLGLGTTEDSLVPQKLQAF 173 (444)
Q Consensus 96 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G-~~h~~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~p~~v~~~ 173 (444)
+..... . ....+..+.+-++.-..++ ....++++.+|+ ++.++.... + ......|..+...
T Consensus 71 ~~~~~~--------~---~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~----~~~~~~~~~v~~~ 133 (276)
T 3no2_A 71 IAAPAG--------C---EMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETG--I----ERPHAQFRQINKN 133 (276)
T ss_dssp EECCTT--------C---EEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCS--C----SSGGGSCSCCEEC
T ss_pred EcCCCC--------c---cccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCC--C----CcccccccCceEC
Confidence 543110 0 1111222333355555566 566777788887 566654211 0 0111123333333
Q ss_pred cCCcEEEEEeCCCeEEEEeCCCC-EEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceEEEEeCC-CC-
Q 013365 174 EGVSIKMVAAGAEHSVAVAEDGE-LYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSS-GR- 250 (444)
Q Consensus 174 ~~~~i~~ia~G~~h~~~Lt~~G~-vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~-G~- 250 (444)
.+-.+.-.........+++.+|+ +|.++.. ..|..+..+ .+.++.-........++++.+ |+
T Consensus 134 ~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~-------------~~~~~~~~~--~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 134 KKGNYLVPLFATSEVREIAPNGQLLNSVKLS-------------GTPFSSAFL--DNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp TTSCEEEEETTTTEEEEECTTSCEEEEEECS-------------SCCCEEEEC--TTSCEEEECBTTSEEEEECTTTCCE
T ss_pred CCCCEEEEecCCCEEEEECCCCCEEEEEECC-------------CCccceeEc--CCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 33445544445666777777776 4555431 012222222 133444333344456677777 76
Q ss_pred EEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEec--C---------CCceeEEeCCCcEEEeecCCCcccc
Q 013365 251 LYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISG--G---------WRHTMAVTSDGKLYGWGWNKFGQVG 315 (444)
Q Consensus 251 vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G---------~~~~~~lt~~g~vy~wG~n~~gqlG 315 (444)
+|.++.+.... .....|.-+..+.+-.+. |+. | ....+.++.+|++ .|=.+....+|
T Consensus 199 ~w~~~~~~~~~------~~l~~~~~~~~~~~G~i~-v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~ 266 (276)
T 3no2_A 199 VRRVNANDIEG------VQLFFVAQLFPLQNGGLY-ICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFG 266 (276)
T ss_dssp EEEEEGGGSBS------CCCSEEEEEEECTTSCEE-EEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSC
T ss_pred EEEecCCCCCC------ccccccccceEcCCCCEE-EEeccCccccccccCCceEEEECCCCCE-EEEecCccccc
Confidence 57776432110 011224444444443333 333 2 3357778888886 56555555544
No 57
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=70.39 E-value=74 Score=30.10 Aligned_cols=210 Identities=14% Similarity=0.130 Sum_probs=99.3
Q ss_pred cEEEEEecCC---eeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeC---CceEEEEecCCeE
Q 013365 72 EIVSVTCGAD---HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEV 145 (444)
Q Consensus 72 ~i~~i~~G~~---~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G---~~h~~~lt~~G~v 145 (444)
.+..++.... +.+.-..+ |.|+.|-........ ....+..........|..|+.. ....+....+|.|
T Consensus 183 ~v~~l~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i 256 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSASDD-HTICLWDINATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256 (430)
T ss_dssp CCCCEEECTTSTTEEEEECTT-SCEEEEETTSCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred CeEEEEeCCCCCCeEEEEeCC-CeEEEEeCCCCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeE
Confidence 3444544332 33333445 899999765422110 0111111111223367778764 3445556689999
Q ss_pred EEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCC---CeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeee
Q 013365 146 QSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKV 222 (444)
Q Consensus 146 y~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~---~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v 222 (444)
+.|-...... ..+..........|..|+... +..+.-..+|.|..|-....++ .+
T Consensus 257 ~i~d~~~~~~---------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-------------~~ 314 (430)
T 2xyi_A 257 MIWDTRNNNT---------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-------------KL 314 (430)
T ss_dssp EEEETTCSCS---------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-------------CS
T ss_pred EEEECCCCCC---------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-------------Ce
Confidence 9997543210 011111111223466666543 2344556789999997543221 11
Q ss_pred eeeecCCCeEEEEEecC---ceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccc--cCCcEEEEecCCC---ce
Q 013365 223 ATVDLQREKMVMVACGW---RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL--RESFISQISGGWR---HT 294 (444)
Q Consensus 223 ~~~~~~~~~i~~Ia~G~---~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~--~~~~i~~i~~G~~---~~ 294 (444)
..+......|..|+... ...+.-..+|.|..|-....+..-.........|..+... ....|..++.... ..
T Consensus 315 ~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l 394 (430)
T 2xyi_A 315 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 394 (430)
T ss_dssp EEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEE
T ss_pred EEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEE
Confidence 12222234566666543 3344556788888886544221100000000001222211 1234666654433 34
Q ss_pred eEEeCCCcEEEeecC
Q 013365 295 MAVTSDGKLYGWGWN 309 (444)
Q Consensus 295 ~~lt~~g~vy~wG~n 309 (444)
+....+|.|..|-..
T Consensus 395 ~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 395 CSVSEDNIMQVWQMA 409 (430)
T ss_dssp EEEETTSEEEEEEEC
T ss_pred EEEECCCCEEEeEcc
Confidence 445678888888654
No 58
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=69.88 E-value=32 Score=30.83 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=11.3
Q ss_pred CceEEEEcCCeEEEEeC
Q 013365 29 SHSVALLSGNIVCSWGR 45 (444)
Q Consensus 29 ~~~~~l~~~g~v~~wG~ 45 (444)
.|++++ -++.||++|-
T Consensus 54 ~~~~~~-~~~~lyv~GG 69 (302)
T 2xn4_A 54 RAGMVY-MAGLVFAVGG 69 (302)
T ss_dssp SCEEEE-ETTEEEEESC
T ss_pred cceEEE-ECCEEEEEeC
Confidence 455544 4889999985
No 59
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=68.43 E-value=76 Score=29.46 Aligned_cols=141 Identities=9% Similarity=0.054 Sum_probs=72.7
Q ss_pred EEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEE---ecCCeeEEEEcCCCEEEEEeCC
Q 013365 23 LISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVT---CGADHTTAYSESCMQVYSWGWG 99 (444)
Q Consensus 23 ~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~---~G~~~~~~l~~~~g~v~~wG~n 99 (444)
.++.-..+.+.-..||.++.|-....... ..+....+..+. ......+.-..+ |.|..|-..
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~ 127 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRDGS--------------KMLKRADYTAVDTAKLQMRRFILGTTE-GDIKVLDSN 127 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEETT--------------TTSCSCCEEEEEEECSSSCEEEEEETT-SCEEEECTT
T ss_pred eeeecCCeEEEEEcCCcEEEEEeccccee--------------eEEecCCceEEEEEecCCCEEEEEECC-CCEEEEeCC
Confidence 34445566666778999999964322111 111111233222 223344444555 889998532
Q ss_pred CCCccCCCCCCCceeeeeecccCCCCEEEEEeCC--ceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCc
Q 013365 100 DFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVS 177 (444)
Q Consensus 100 ~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~ 177 (444)
.. .+..........|..++... .+.+.-..||.|+.|-..... ....+.. ....
T Consensus 128 ~~------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-----------~~~~~~~-h~~~ 183 (420)
T 3vl1_A 128 FN------------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS-----------NPRTLIG-HRAT 183 (420)
T ss_dssp SC------------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------CCEEEEC-CSSC
T ss_pred Cc------------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-----------CceEEcC-CCCc
Confidence 11 12222112234677777653 355666788999999654321 1111221 1224
Q ss_pred EEEEEeC--CCeEEEEeCCCCEEEeeC
Q 013365 178 IKMVAAG--AEHSVAVAEDGELYGWGW 202 (444)
Q Consensus 178 i~~ia~G--~~h~~~Lt~~G~vy~wG~ 202 (444)
|..++.. ....+.-..||.|..|-.
T Consensus 184 v~~~~~~~~~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 184 VTDIAIIDRGRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred EEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence 5555543 344555667888999864
No 60
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=67.37 E-value=68 Score=28.51 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=11.5
Q ss_pred ceEEEEecCCeEEEEEC
Q 013365 134 SHCLAVTVEGEVQSWGR 150 (444)
Q Consensus 134 ~h~~~lt~~G~vy~wG~ 150 (444)
.|++++. +++||.+|-
T Consensus 152 ~~~~~~~-~~~iyv~GG 167 (301)
T 2vpj_A 152 GAGLVVA-SGVIYCLGG 167 (301)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred cceEEEE-CCEEEEECC
Confidence 4555554 789999984
No 61
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=66.58 E-value=61 Score=29.19 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=12.4
Q ss_pred CceEEEEeCCCCEEEEeCC
Q 013365 239 WRHTISVSSSGRLYSYGWS 257 (444)
Q Consensus 239 ~~hs~~lt~~G~vy~~G~n 257 (444)
..|+++. -+++||++|-.
T Consensus 140 ~~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 140 YGHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp BSCEEEE-ETTEEEEECCB
T ss_pred cceeEEE-ECCEEEEEeCC
Confidence 3566655 57789999843
No 62
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=66.11 E-value=1e+02 Score=30.19 Aligned_cols=186 Identities=14% Similarity=0.139 Sum_probs=97.6
Q ss_pred cEEEEEecCC---eeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCC---CEEEEEeCCc---eEEEEecC
Q 013365 72 EIVSVTCGAD---HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSL---RVKQIACGDS---HCLAVTVE 142 (444)
Q Consensus 72 ~i~~i~~G~~---~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~---~i~~Ia~G~~---h~~~lt~~ 142 (444)
.|..++...+ ..+.-..+ +.|+.|-.... .....+.. ... .|..++.... ..+..+.+
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d-~~v~vwd~~~~-----------~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDD-GSVVFYQGPPF-----------KFSASDRT-HHKQGSFVRDVEFSPDSGEFVITVGSD 228 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETT-TEEEEEETTTB-----------EEEEEECS-SSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred cEEEEEECCCCCcEEEEEeCC-CcEEEEeCCCc-----------ceeeeecc-cCCCCceEEEEEECCCCCCEEEEEeCC
Confidence 4666665544 34444455 89999853211 01111111 122 5777777644 55556789
Q ss_pred CeEEEEECCCCCccCCCCCCCcccceeeec---ccCCcEEEEEe-CCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccc
Q 013365 143 GEVQSWGRNQNGQLGLGTTEDSLVPQKLQA---FEGVSIKMVAA-GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLI 218 (444)
Q Consensus 143 G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~---~~~~~i~~ia~-G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~ 218 (444)
|.|+.|-......+ ..+.. .....|..++. .....+....+|.|..|-....
T Consensus 229 g~i~vwd~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~------------- 284 (615)
T 1pgu_A 229 RKISCFDGKSGEFL-----------KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS------------- 284 (615)
T ss_dssp CCEEEEETTTCCEE-----------EECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT-------------
T ss_pred CeEEEEECCCCCEe-----------EEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCC-------------
Confidence 99999964321111 11100 11234666555 4445566667899999964321
Q ss_pred eeeeeeeecC----CCeEEEEEe-cCceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCCCc
Q 013365 219 PEKVATVDLQ----REKMVMVAC-GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRH 293 (444)
Q Consensus 219 p~~v~~~~~~----~~~i~~Ia~-G~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~ 293 (444)
..+..+... ...+..+.. ...+.++...+|.|+.|-... ..+..........|..++. ..
T Consensus 285 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~------------~~~~~~~~~~~~~v~~~~~-~~- 349 (615)
T 1pgu_A 285 -KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH------------DEVLKTISGHNKGITALTV-NP- 349 (615)
T ss_dssp -EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE------------EEEEEEECCCSSCEEEEET-TT-
T ss_pred -cEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC------------CcEEEEEeCCCCCEEEEEe-cC-
Confidence 111111111 112222222 556667778899999986432 1111111223345888888 66
Q ss_pred eeEEeCCCcEEEeecC
Q 013365 294 TMAVTSDGKLYGWGWN 309 (444)
Q Consensus 294 ~~~lt~~g~vy~wG~n 309 (444)
.+.-..+|.|..|-..
T Consensus 350 l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 350 LISGSYDGRIMEWSSS 365 (615)
T ss_dssp TEEEETTSCEEETTTT
T ss_pred cEEECCCCeEEEEEch
Confidence 5566788999999654
No 63
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=65.96 E-value=72 Score=28.32 Aligned_cols=76 Identities=11% Similarity=0.094 Sum_probs=37.6
Q ss_pred ccCCcEEEEEeC-CCeEEEEeCCCC-EEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceEEEEeCCCC
Q 013365 173 FEGVSIKMVAAG-AEHSVAVAEDGE-LYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGR 250 (444)
Q Consensus 173 ~~~~~i~~ia~G-~~h~~~Lt~~G~-vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~ 250 (444)
+.+-++.-..++ ....++++.+|+ ++.++.... + ......|..+.... +..+.-.........+++.+|+
T Consensus 85 ~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~----~~~~~~~~~v~~~~--~G~~lv~~~~~~~v~~~d~~G~ 156 (276)
T 3no2_A 85 LPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETG--I----ERPHAQFRQINKNK--KGNYLVPLFATSEVREIAPNGQ 156 (276)
T ss_dssp CTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCS--C----SSGGGSCSCCEECT--TSCEEEEETTTTEEEEECTTSC
T ss_pred CCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCC--C----CcccccccCceECC--CCCEEEEecCCCEEEEECCCCC
Confidence 344456555666 556667788887 455543210 0 01111222222221 2344433344556667777776
Q ss_pred -EEEEeC
Q 013365 251 -LYSYGW 256 (444)
Q Consensus 251 -vy~~G~ 256 (444)
+|.++.
T Consensus 157 ~~w~~~~ 163 (276)
T 3no2_A 157 LLNSVKL 163 (276)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 577664
No 64
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=65.77 E-value=73 Score=28.29 Aligned_cols=17 Identities=6% Similarity=-0.191 Sum_probs=12.0
Q ss_pred ceEEEEecCCeEEEEECC
Q 013365 134 SHCLAVTVEGEVQSWGRN 151 (444)
Q Consensus 134 ~h~~~lt~~G~vy~wG~n 151 (444)
.|++++. +++||.+|-.
T Consensus 105 ~~~~~~~-~~~lyv~GG~ 121 (301)
T 2vpj_A 105 LAGATTL-GDMIYVSGGF 121 (301)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred ceeEEEE-CCEEEEEccc
Confidence 5555554 7899999853
No 65
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=65.61 E-value=76 Score=28.45 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=11.0
Q ss_pred eeEEEeCCCC-EEEEeC
Q 013365 341 HTLAVTERQN-VFSWGR 356 (444)
Q Consensus 341 h~~~l~~~g~-v~~wG~ 356 (444)
+.+++..+|+ +|.-..
T Consensus 317 ~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 317 NSLALSADGKTLYVSVK 333 (353)
T ss_dssp EEEEECTTSCEEEEEEE
T ss_pred CeEEEcCCCCEEEEEEc
Confidence 5678888887 555443
No 66
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=65.39 E-value=75 Score=28.28 Aligned_cols=60 Identities=23% Similarity=0.201 Sum_probs=29.8
Q ss_pred CCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEE----ecCceEEEEeCCCCEEEEeC
Q 013365 185 AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVA----CGWRHTISVSSSGRLYSYGW 256 (444)
Q Consensus 185 ~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia----~G~~hs~~lt~~G~vy~~G~ 256 (444)
..|++++. ++++|++|-.... .....+..++........+. .-..|++++. ++++|.+|-
T Consensus 100 ~~~~~~~~-~~~iyv~GG~~~~----------~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 163 (302)
T 2xn4_A 100 STLGAAVL-NGLLYAVGGFDGS----------TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGG 163 (302)
T ss_dssp BSCEEEEE-TTEEEEEEEECSS----------CEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred cceEEEEE-CCEEEEEcCCCCC----------ccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeC
Confidence 35666554 7899999832110 01112223333233333332 1234555554 789999984
No 67
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=63.60 E-value=91 Score=28.62 Aligned_cols=191 Identities=10% Similarity=0.058 Sum_probs=91.3
Q ss_pred cEEEEEecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCC--ceEEEEecCCeEEEEE
Q 013365 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWG 149 (444)
Q Consensus 72 ~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~--~h~~~lt~~G~vy~wG 149 (444)
.|.+++...+..++...++|.|..|-...... .........-....|..|+... .+.+.-..||.|..|-
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~--------~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENET--------LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTSS--------CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCCc--------eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 47777765554444444449999995432211 1111111111123677777653 3455556789999996
Q ss_pred CCCCCccCCCCCCCcccceeeeccc--CCcEEEEEeCCC---eEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeee
Q 013365 150 RNQNGQLGLGTTEDSLVPQKLQAFE--GVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVAT 224 (444)
Q Consensus 150 ~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~ia~G~~---h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~ 224 (444)
.... ..+..+. ...|..++.... ..+.-..||.|..|-.... +. ...+ .
T Consensus 156 ~~~~--------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~-~~----------~~~~-~ 209 (344)
T 4gqb_B 156 LAQQ--------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP-KP----------ASQI-G 209 (344)
T ss_dssp TTTT--------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS-SC----------EEEC-C
T ss_pred CCCC--------------cEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccc-ce----------eeee-e
Confidence 4321 1122222 235666665432 2334567899999953221 10 0001 0
Q ss_pred eecCCCeEEEEEec---CceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCC---CceeEEe
Q 013365 225 VDLQREKMVMVACG---WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW---RHTMAVT 298 (444)
Q Consensus 225 ~~~~~~~i~~Ia~G---~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~---~~~~~lt 298 (444)
.......+..++.. ....+.-..+|.|..|=... +++ ...+.. ....|..|+... ...+.-.
T Consensus 210 ~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~-~~~----------~~~~~~-h~~~v~~v~fsp~g~~~lasgs 277 (344)
T 4gqb_B 210 CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS-TSC----------VLSSAV-HSQCVTGLVFSPHSVPFLASLS 277 (344)
T ss_dssp ----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---C----------CEEEEC-CSSCEEEEEECSSSSCCEEEEE
T ss_pred cceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-CcE----------EEEEcC-CCCCEEEEEEccCCCeEEEEEe
Confidence 01112234444432 22233345788888884321 110 111111 123477776543 2233346
Q ss_pred CCCcEEEeec
Q 013365 299 SDGKLYGWGW 308 (444)
Q Consensus 299 ~~g~vy~wG~ 308 (444)
.|+.|+.|-.
T Consensus 278 ~D~~i~vwd~ 287 (344)
T 4gqb_B 278 EDCSLAVLDS 287 (344)
T ss_dssp TTSCEEEECT
T ss_pred CCCeEEEEEC
Confidence 8999999954
No 68
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=63.13 E-value=93 Score=28.58 Aligned_cols=237 Identities=14% Similarity=0.079 Sum_probs=110.8
Q ss_pred CEEEEecCCC--ceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecC--CeeEEEEcCCCEEEE
Q 013365 20 PVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA--DHTTAYSESCMQVYS 95 (444)
Q Consensus 20 ~i~~ia~G~~--~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~--~~~~~l~~~~g~v~~ 95 (444)
.|..++...+ ..+.-..||.|++|-. .++ ....+.. ....|..++... .+.+....+ |.|+.
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~--~~~----------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-~~i~i 175 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNK--TGA----------LLNVLNF-HRAPIVSVKWNKDGTHIISMDVE-NVTIL 175 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEET--TSC----------EEEEECC-CCSCEEEEEECTTSSEEEEEETT-CCEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeC--CCC----------eeeeccC-CCccEEEEEECCCCCEEEEEecC-CeEEE
Confidence 6777776533 4444557889999951 111 1111211 123567776643 344445556 89999
Q ss_pred EeCCCCCccCCCCCCCceeeeeec----ccCCCCEEEEEe-CCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceee
Q 013365 96 WGWGDFGRLGHGNSSDLFTPLPIK----ALHSLRVKQIAC-GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (444)
Q Consensus 96 wG~n~~gqlG~~~~~~~~~p~~v~----~~~~~~i~~Ia~-G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v 170 (444)
|-......+..-..... ....+. ...+..+..++. .....++.+.+|.|+.|-...... ...+
T Consensus 176 wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~-----------~~~~ 243 (425)
T 1r5m_A 176 WNVISGTVMQHFELKET-GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP-----------TGKL 243 (425)
T ss_dssp EETTTTEEEEEECCC----------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC-----------SEEE
T ss_pred EECCCCcEEEEeecccc-CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce-----------eeee
Confidence 96543211100000000 000000 000000222222 234566677888999996543110 1111
Q ss_pred ecccCCcEEEEEe--CCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCc-eEEEEeC
Q 013365 171 QAFEGVSIKMVAA--GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR-HTISVSS 247 (444)
Q Consensus 171 ~~~~~~~i~~ia~--G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~-hs~~lt~ 247 (444)
. .....|..++. .....+....+|.|+.|-.... ..+..+......|..++.... ..++...
T Consensus 244 ~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 308 (425)
T 1r5m_A 244 I-GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG--------------NSQNCFYGHSQSIVSASWVGDDKVISCSM 308 (425)
T ss_dssp C-CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB--------------SCSEEECCCSSCEEEEEEETTTEEEEEET
T ss_pred c-cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC--------------ccceEecCCCccEEEEEECCCCEEEEEeC
Confidence 1 11224555543 3445566667899998853321 011111112335555554433 5556677
Q ss_pred CCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecC--CCceeEEeCCCcEEEeecC
Q 013365 248 SGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKLYGWGWN 309 (444)
Q Consensus 248 ~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n 309 (444)
+|.|+.|-..... +..........|..++.. ....++-..+|.|+.|-..
T Consensus 309 d~~i~i~d~~~~~------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 309 DGSVRLWSLKQNT------------LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp TSEEEEEETTTTE------------EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred CCcEEEEECCCCc------------EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 8888888643211 111111122346665544 3344455678899999654
No 69
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=62.50 E-value=52 Score=29.56 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=12.1
Q ss_pred CCceeEEeCCCcEEEeec
Q 013365 291 WRHTMAVTSDGKLYGWGW 308 (444)
Q Consensus 291 ~~~~~~lt~~g~vy~wG~ 308 (444)
..|++++. +++||++|-
T Consensus 207 ~~~~~~~~-~~~iyv~GG 223 (308)
T 1zgk_A 207 SGAGVCVL-HNCIYAAGG 223 (308)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred ccceEEEE-CCEEEEEeC
Confidence 45666555 789999983
No 70
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=61.76 E-value=60 Score=29.26 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=12.5
Q ss_pred CCceeEEeCCCcEEEeecC
Q 013365 291 WRHTMAVTSDGKLYGWGWN 309 (444)
Q Consensus 291 ~~~~~~lt~~g~vy~wG~n 309 (444)
..|+++. -+++||++|-.
T Consensus 140 ~~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 140 YGHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp BSCEEEE-ETTEEEEECCB
T ss_pred cceeEEE-ECCEEEEEeCC
Confidence 4566655 57789999843
No 71
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=60.61 E-value=1.1e+02 Score=28.60 Aligned_cols=111 Identities=8% Similarity=-0.038 Sum_probs=55.5
Q ss_pred CCCEEEEec----CCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccC-CCCcEEEEEecCC--eeEEEEcCC
Q 013365 18 FRPVLLISA----GASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSAL-DGHEIVSVTCGAD--HTTAYSESC 90 (444)
Q Consensus 18 ~~~i~~ia~----G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~-~~~~i~~i~~G~~--~~~~l~~~~ 90 (444)
...+..+.. .....+.-..||.|+.|-..... ....+... ....|..++...+ +.+.-..+
T Consensus 168 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d- 235 (437)
T 3gre_A 168 NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE-----------RLQIIENSPRHGAVSSICIDEECCVLILGTTR- 235 (437)
T ss_dssp CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC-----------EEEEEECCGGGCCEEEEEECTTSCEEEEEETT-
T ss_pred ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-----------eeEEEccCCCCCceEEEEECCCCCEEEEEcCC-
Confidence 344555542 24455556678899988643211 11112111 1235777776533 33334555
Q ss_pred CEEEEEeCCCCCccCCCCCCCceeeee-ecccCCCCEEEEEeCC----c--eEEEEecCCeEEEEECCC
Q 013365 91 MQVYSWGWGDFGRLGHGNSSDLFTPLP-IKALHSLRVKQIACGD----S--HCLAVTVEGEVQSWGRNQ 152 (444)
Q Consensus 91 g~v~~wG~n~~gqlG~~~~~~~~~p~~-v~~~~~~~i~~Ia~G~----~--h~~~lt~~G~vy~wG~n~ 152 (444)
|.|..|-.... .+.. +.......|..++... + ..+.-+.||.|+.|-...
T Consensus 236 g~i~iwd~~~~------------~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 236 GIIDIWDIRFN------------VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp SCEEEEETTTT------------EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred CeEEEEEcCCc------------cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence 89999964321 1111 1111223566664332 2 344445678899997543
No 72
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=60.29 E-value=1.1e+02 Score=28.28 Aligned_cols=180 Identities=9% Similarity=0.068 Sum_probs=0.0
Q ss_pred CCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCc------CCeeeccCCC--CcEEEEEecCC--eeEEEEcCCCEEEEE
Q 013365 27 GASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRL------SPTQLSALDG--HEIVSVTCGAD--HTTAYSESCMQVYSW 96 (444)
Q Consensus 27 G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~------~P~~v~~~~~--~~i~~i~~G~~--~~~~l~~~~g~v~~w 96 (444)
+....+.-..||.|+.| +..... .+..+..+.. ..|..++...+ ..++....+|.|+.|
T Consensus 125 ~~~~l~s~~~dg~v~iw-----------d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 193 (416)
T 2pm9_A 125 QDNVLASGGNNGEIFIW-----------DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIW 193 (416)
T ss_dssp STTBEEEECSSSCEEBC-----------BTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEE
T ss_pred CCCEEEEEcCCCeEEEE-----------ECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEE
Q ss_pred eCCCCCccCCCCCCCceeeeeecccC------CCCEEEEEeCCc---eEEEEecCC---eEEEEECCCCCccCCCCCCCc
Q 013365 97 GWGDFGRLGHGNSSDLFTPLPIKALH------SLRVKQIACGDS---HCLAVTVEG---EVQSWGRNQNGQLGLGTTEDS 164 (444)
Q Consensus 97 G~n~~gqlG~~~~~~~~~p~~v~~~~------~~~i~~Ia~G~~---h~~~lt~~G---~vy~wG~n~~gqlG~~~~~~~ 164 (444)
-.... .+....... ...|..++.... ..+.-..+| .|+.| +....
T Consensus 194 d~~~~------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~-----------d~~~~ 250 (416)
T 2pm9_A 194 DLKAK------------KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW-----------DLRNA 250 (416)
T ss_dssp ETTTT------------EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE-----------ETTST
T ss_pred ECCCC------------CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE-----------eCCCC
Q ss_pred ccceeeec-ccCCcEEEEEe---CCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecC-
Q 013365 165 LVPQKLQA-FEGVSIKMVAA---GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW- 239 (444)
Q Consensus 165 ~~p~~v~~-~~~~~i~~ia~---G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~- 239 (444)
..+..... .....|..++. .....+.-..||.|+.| +......+..+......|..++...
T Consensus 251 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~w--------------d~~~~~~~~~~~~~~~~v~~~~~s~~ 316 (416)
T 2pm9_A 251 NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW--------------NPESAEQLSQFPARGNWCFKTKFAPE 316 (416)
T ss_dssp TSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEE--------------CSSSCCEEEEEECSSSCCCCEEECTT
T ss_pred CCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEe--------------eCCCCccceeecCCCCceEEEEECCC
Q ss_pred --ceEEEEeCCCCEEEE
Q 013365 240 --RHTISVSSSGRLYSY 254 (444)
Q Consensus 240 --~hs~~lt~~G~vy~~ 254 (444)
...+.-..+|.|..|
T Consensus 317 ~~~~l~s~~~d~~i~iw 333 (416)
T 2pm9_A 317 APDLFACASFDNKIEVQ 333 (416)
T ss_dssp CTTEEEECCSSSEEEEE
T ss_pred CCCEEEEEecCCcEEEE
No 73
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=59.81 E-value=95 Score=27.61 Aligned_cols=204 Identities=10% Similarity=-0.053 Sum_probs=101.8
Q ss_pred cEEEEEecC--CeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeC--Cc-eEEEEecCCeEE
Q 013365 72 EIVSVTCGA--DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DS-HCLAVTVEGEVQ 146 (444)
Q Consensus 72 ~i~~i~~G~--~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~-h~~~lt~~G~vy 146 (444)
.|..++... .+.++-..+ |.|+.|-..... ....+..+. .....|..++.. .. ..+.-+.+|.|+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d-~~v~iw~~~~~~--------~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWD-GSLTVYKFDIQA--------KNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETT-SEEEEEEEETTT--------TEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEcCC-CeEEEEEeCCCC--------ccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 466666543 334444556 999999643221 001111111 223367766654 34 566677899999
Q ss_pred EEECCCCCccCCCCCCCcccceeeec-ccCCcEEEEEeC-CCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeee
Q 013365 147 SWGRNQNGQLGLGTTEDSLVPQKLQA-FEGVSIKMVAAG-AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVAT 224 (444)
Q Consensus 147 ~wG~n~~gqlG~~~~~~~~~p~~v~~-~~~~~i~~ia~G-~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~ 224 (444)
.|-.+..+++ ..+.. .....|..++.. ....+....+|.|+.|-......- ........+..
T Consensus 83 ~wd~~~~~~~-----------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~ 146 (342)
T 1yfq_A 83 KVDLIGSPSF-----------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG-----VIAVKNLNSNN 146 (342)
T ss_dssp EECSSSSSSE-----------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB-----CEEEEESCSSS
T ss_pred EEEeccCCce-----------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccc-----cccccCCeeeE
Confidence 9954111111 11111 012245555443 566667778999999953210000 00000000111
Q ss_pred eecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecC---CCceeEEeCCC
Q 013365 225 VDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG---WRHTMAVTSDG 301 (444)
Q Consensus 225 ~~~~~~~i~~Ia~G~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~~~~~lt~~g 301 (444)
+. ....|..++......++.+.+|.|+.|-....+.. ............|..|+.. ....++-..+|
T Consensus 147 ~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg 216 (342)
T 1yfq_A 147 TK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD---------NGTIEESGLKYQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp SS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC---------CCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred Ee-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc---------cceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence 11 13466777776667667788999999975431110 0111111122335555544 34455556788
Q ss_pred cEEEeecCCC
Q 013365 302 KLYGWGWNKF 311 (444)
Q Consensus 302 ~vy~wG~n~~ 311 (444)
.+..|=....
T Consensus 217 ~i~i~~~~~~ 226 (342)
T 1yfq_A 217 RVAVEFFDDQ 226 (342)
T ss_dssp EEEEEECCTT
T ss_pred cEEEEEEcCC
Confidence 9988876543
No 74
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=58.74 E-value=99 Score=27.49 Aligned_cols=253 Identities=11% Similarity=0.010 Sum_probs=123.9
Q ss_pred CCCCCEEEEecCC--CceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEec--CC-eeEEEEcCC
Q 013365 16 APFRPVLLISAGA--SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--AD-HTTAYSESC 90 (444)
Q Consensus 16 ~~~~~i~~ia~G~--~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G--~~-~~~~l~~~~ 90 (444)
+....|..++... ...+.-..||.|++|-..... ....+..+... ...|..++.. .. +.+.-..+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~--------~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d- 78 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA--------KNVDLLQSLRY-KHPLLCCNFIDNTDLQIYVGTVQ- 78 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT--------TEEEEEEEEEC-SSCEEEEEEEESSSEEEEEEETT-
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC--------ccccceeeeec-CCceEEEEECCCCCcEEEEEcCC-
Confidence 3455677777543 344455578999999643221 00011222211 2356666654 33 44555556
Q ss_pred CEEEEEeCCCCCccCCCCCCCceeeeeecc-cCCCCEEEEEeC-CceEEEEecCCeEEEEECCCCCccCCCCCCCcccce
Q 013365 91 MQVYSWGWGDFGRLGHGNSSDLFTPLPIKA-LHSLRVKQIACG-DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQ 168 (444)
Q Consensus 91 g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~-~~~~~i~~Ia~G-~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~ 168 (444)
|.|+.|-....++ ...+.. .....|..++.. ....+....+|.|+.|-...... ........+.
T Consensus 79 g~i~~wd~~~~~~-----------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~ 144 (342)
T 1yfq_A 79 GEILKVDLIGSPS-----------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GVIAVKNLNS 144 (342)
T ss_dssp SCEEEECSSSSSS-----------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BCEEEEESCS
T ss_pred CeEEEEEeccCCc-----------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---ccccccCCee
Confidence 9999995411111 122221 023367666654 56667778899999995321000 0000000000
Q ss_pred eeecccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEec---CceEEEE
Q 013365 169 KLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG---WRHTISV 245 (444)
Q Consensus 169 ~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G---~~hs~~l 245 (444)
.... ....|..++...+..++.+.+|.|+.|-....+.. ...... ......|..++.. ....++-
T Consensus 145 ~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---------~~~~~~--~~~~~~i~~i~~~~~~~~~l~~~ 212 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD---------NGTIEE--SGLKYQIRDVALLPKEQEGYACS 212 (342)
T ss_dssp SSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC---------CCEEEE--CSCSSCEEEEEECSGGGCEEEEE
T ss_pred eEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc---------cceeee--cCCCCceeEEEECCCCCCEEEEE
Confidence 0001 22357778877777777789999999975431110 001110 1112345555553 3455566
Q ss_pred eCCCCEEEEeCCCCCcccCCCCCCceeeeeecccc--------CCcEEEEecC--CCceeEEeCCCcEEEeecC
Q 013365 246 SSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR--------ESFISQISGG--WRHTMAVTSDGKLYGWGWN 309 (444)
Q Consensus 246 t~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~--------~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n 309 (444)
..+|.|..|-....+.-... ... ..+.... ...|..++.. ....+.-..+|.|+.|=..
T Consensus 213 ~~dg~i~i~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 213 SIDGRVAVEFFDDQGDDYNS--SKR---FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp ETTSEEEEEECCTTCCSTTC--TTC---EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred ecCCcEEEEEEcCCCccccc--ccc---eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 77888888765433100000 000 0111000 1146666543 3344455678999999653
No 75
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=58.58 E-value=1.4e+02 Score=29.19 Aligned_cols=188 Identities=13% Similarity=0.077 Sum_probs=99.3
Q ss_pred CCCEEEEecCCC---ceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCC---cEEEEEecCC---eeEEEEc
Q 013365 18 FRPVLLISAGAS---HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGH---EIVSVTCGAD---HTTAYSE 88 (444)
Q Consensus 18 ~~~i~~ia~G~~---~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~---~i~~i~~G~~---~~~~l~~ 88 (444)
...|..++.... ..+.-..||.|..|-.... .....+..- .. .|..++...+ +.+....
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-----------~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-----------KFSASDRTH-HKQGSFVRDVEFSPDSGEFVITVGS 227 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-----------EEEEEECSS-SCTTCCEEEEEECSTTCCEEEEEET
T ss_pred CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-----------ceeeeeccc-CCCCceEEEEEECCCCCCEEEEEeC
Confidence 345555554433 3445557888998853211 011111111 12 5777776644 4444556
Q ss_pred CCCEEEEEeCCCCCccCCCCCCCceeeeeecc---cCCCCEEEEEe-CCceEEEEecCCeEEEEECCCCCccCCCCCCCc
Q 013365 89 SCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKA---LHSLRVKQIAC-GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDS 164 (444)
Q Consensus 89 ~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~---~~~~~i~~Ia~-G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~ 164 (444)
+ |.|+.|-..... ....+.. .....|..++. ...+.+....+|.|..|-......+
T Consensus 228 d-g~i~vwd~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-------- 287 (615)
T 1pgu_A 228 D-RKISCFDGKSGE-----------FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV-------- 287 (615)
T ss_dssp T-CCEEEEETTTCC-----------EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE--------
T ss_pred C-CeEEEEECCCCC-----------EeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEE--------
Confidence 6 999999643211 1111101 22336777766 3445666677899999965331100
Q ss_pred ccceeeecc---cCCcEEEEEe-CCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCc
Q 013365 165 LVPQKLQAF---EGVSIKMVAA-GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR 240 (444)
Q Consensus 165 ~~p~~v~~~---~~~~i~~ia~-G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~ 240 (444)
..+... ....+..+.. .....++.+.+|.|+.|-... ...+..+......|..++. ..
T Consensus 288 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~--------------~~~~~~~~~~~~~v~~~~~-~~ 349 (615)
T 1pgu_A 288 ---QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH--------------DEVLKTISGHNKGITALTV-NP 349 (615)
T ss_dssp ---EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE--------------EEEEEEECCCSSCEEEEET-TT
T ss_pred ---EEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC--------------CcEEEEEeCCCCCEEEEEe-cC
Confidence 011100 0112333322 556677778899999995322 1222233333457778877 66
Q ss_pred eEEEEeCCCCEEEEeC
Q 013365 241 HTISVSSSGRLYSYGW 256 (444)
Q Consensus 241 hs~~lt~~G~vy~~G~ 256 (444)
.+.-..+|.|..|-.
T Consensus 350 -l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 350 -LISGSYDGRIMEWSS 364 (615)
T ss_dssp -TEEEETTSCEEETTT
T ss_pred -cEEECCCCeEEEEEc
Confidence 566678889998854
No 76
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=58.37 E-value=1.1e+02 Score=27.98 Aligned_cols=190 Identities=14% Similarity=0.174 Sum_probs=93.4
Q ss_pred cEEEEEecCC--eeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeC---CceEEEEecCCeEE
Q 013365 72 EIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQ 146 (444)
Q Consensus 72 ~i~~i~~G~~--~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G---~~h~~~lt~~G~vy 146 (444)
.|..|+...+ +.+.-..+ +.|..|-..... ....+.. ....|..|+.. ....+....||.|.
T Consensus 141 ~V~~v~~spdg~~l~sgs~d-g~v~iwd~~~~~-----------~~~~~~~-h~~~v~~v~~s~~~~~~~~s~~~dg~v~ 207 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKD-FSVKVWDLSQKA-----------VLKSYNA-HSSEVNCVAACPGKDTIFLSCGEDGRIL 207 (357)
T ss_dssp CEEEEEECSSSSEEEEEETT-SCEEEEETTTTE-----------EEEEECC-CSSCEEEEEECTTCSSCEEEEETTSCEE
T ss_pred CEEEEEECCCCCEEEEEeCC-CeEEEEECCCCc-----------EEEEEcC-CCCCEEEEEEccCCCceeeeeccCCceE
Confidence 4677766544 33333455 899999543210 1111111 22367777764 23455667889999
Q ss_pred EEECCCCCccCCCCCCCcccceeee-cccCCcEEEEEeCC--CeEE-EEeCCCCEEEeeCCCCCCcCCCCCCCccceeee
Q 013365 147 SWGRNQNGQLGLGTTEDSLVPQKLQ-AFEGVSIKMVAAGA--EHSV-AVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKV 222 (444)
Q Consensus 147 ~wG~n~~gqlG~~~~~~~~~p~~v~-~~~~~~i~~ia~G~--~h~~-~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v 222 (444)
.|-......+ ..+. ......+..++... .+.+ .-..++.|+.|-... +..+
T Consensus 208 ~wd~~~~~~~-----------~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~--------------~~~~ 262 (357)
T 4g56_B 208 LWDTRKPKPA-----------TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN--------------PDSA 262 (357)
T ss_dssp ECCTTSSSCB-----------CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC--------------GGGC
T ss_pred EEECCCCcee-----------eeeeeccccccccchhhhhcccceEEEeecccceeEEECCC--------------CcEe
Confidence 9943221100 0010 11123456666532 2233 346889999985322 1112
Q ss_pred eeeecCCCeEEEEEec---CceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCC-Cc--eeE
Q 013365 223 ATVDLQREKMVMVACG---WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW-RH--TMA 296 (444)
Q Consensus 223 ~~~~~~~~~i~~Ia~G---~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~-~~--~~~ 296 (444)
..+......|..++.. ....+.-.+||.|+.|=.. .+++ ...+. ....|..|+... +. .+-
T Consensus 263 ~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~-~~~~----------~~~~~--H~~~V~~vafsP~d~~~l~s 329 (357)
T 4g56_B 263 QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDAD-FSEV----------FRDLS--HRDFVTGVAWSPLDHSKFTT 329 (357)
T ss_dssp EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT-SCEE----------EEECC--CSSCEEEEEECSSSTTEEEE
T ss_pred EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECC-CCcE----------eEECC--CCCCEEEEEEeCCCCCEEEE
Confidence 2222224467777653 2334445688999999432 1111 11111 123477777541 22 222
Q ss_pred EeCCCcEEEeecCCCc
Q 013365 297 VTSDGKLYGWGWNKFG 312 (444)
Q Consensus 297 lt~~g~vy~wG~n~~g 312 (444)
-..||.|+.|=....+
T Consensus 330 ~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 330 VGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EETTSCEEEEECC---
T ss_pred EcCCCeEEEEECCCCC
Confidence 3578999999754433
No 77
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=57.87 E-value=1.1e+02 Score=27.84 Aligned_cols=298 Identities=10% Similarity=-0.002 Sum_probs=138.0
Q ss_pred CCCCEEEEecCC---CceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeec----cCCCCcEEEEEecC---CeeEEE
Q 013365 17 PFRPVLLISAGA---SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLS----ALDGHEIVSVTCGA---DHTTAY 86 (444)
Q Consensus 17 ~~~~i~~ia~G~---~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~----~~~~~~i~~i~~G~---~~~~~l 86 (444)
-...|..|+... ...+.-..||.|.+|-.........-. ......+. ......|..++... ...+..
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYT---CKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEE---ECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEe---ccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 456788888654 344445579999999655332211100 00000000 01224577777643 345555
Q ss_pred EcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCC-----ceEEEEecCCeEEEEECCCCCccCCCCC
Q 013365 87 SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-----SHCLAVTVEGEVQSWGRNQNGQLGLGTT 161 (444)
Q Consensus 87 ~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~-----~h~~~lt~~G~vy~wG~n~~gqlG~~~~ 161 (444)
..+ |.|..|-.... .+..... ....+..+.... ...++-+.+|.|+.|-......
T Consensus 119 ~~d-~~i~iwd~~~~------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~------ 178 (408)
T 4a11_B 119 SFD-KTLKVWDTNTL------------QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC------ 178 (408)
T ss_dssp ETT-SEEEEEETTTT------------EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC------
T ss_pred eCC-CeEEEeeCCCC------------ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce------
Confidence 556 99999965321 1111111 122455555432 2556667889999996533111
Q ss_pred CCcccceeeecccCCcEEEEEeCCC---eEEEEeCCCCEEEeeCCCCCCcCC-CCC-CCccceeeeeeeecCCCeEEEEE
Q 013365 162 EDSLVPQKLQAFEGVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGL-GDR-NDRLIPEKVATVDLQREKMVMVA 236 (444)
Q Consensus 162 ~~~~~p~~v~~~~~~~i~~ia~G~~---h~~~Lt~~G~vy~wG~n~~gqlG~-~~~-~~~~~p~~v~~~~~~~~~i~~Ia 236 (444)
...+.. ....|..++.... ..+.-..+|.|+.|-.......-. -.. ..................|..++
T Consensus 179 -----~~~~~~-~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 179 -----SHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp -----CEEECC-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred -----eeeecC-CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 111111 1235666665433 245667899999997543221100 000 00000000000011123566665
Q ss_pred ec--CceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEeecCCCccc
Q 013365 237 CG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQV 314 (444)
Q Consensus 237 ~G--~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gql 314 (444)
.. ..+.+....+|.|+.|-......+-.-.. ...........+..........++...++.|+.|-....-.+
T Consensus 253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 327 (408)
T 4a11_B 253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG-----KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI 327 (408)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC-----CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE
T ss_pred EcCCCCEEEEecCCCeEEEEECCCCccceeccc-----cccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce
Confidence 53 33566667899999997543222110000 000000111112222233445555677889999975432221
Q ss_pred ccCCCCCccCceEecc---CCCcEEe--cCCeeEEEeCCCCEEEEeCCCC
Q 013365 315 GVGDNVDHCSPVQVKF---PLDQISC--GWRHTLAVTERQNVFSWGRGTN 359 (444)
Q Consensus 315 G~g~~~~~~~p~~v~~---~~~~i~~--G~~h~~~l~~~g~v~~wG~n~~ 359 (444)
. .+.. ....++. ...+.+.-..||.|+.|=-...
T Consensus 328 ~-----------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 328 T-----------MLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp E-----------EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred e-----------eeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 1 1111 1112222 2344555667889999966543
No 78
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=57.75 E-value=1.1e+02 Score=27.82 Aligned_cols=251 Identities=8% Similarity=0.001 Sum_probs=117.9
Q ss_pred CCCCEEEEec---CCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCC-----eeEEEEc
Q 013365 17 PFRPVLLISA---GASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD-----HTTAYSE 88 (444)
Q Consensus 17 ~~~~i~~ia~---G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~-----~~~~l~~ 88 (444)
....|..++. +....+....||.|..|-..... +....... ..+..+..... ..++-..
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 164 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ------------TADVFNFE-ETVYSHHMSPVSTKHCLVAVGTR 164 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE------------EEEEEECS-SCEEEEEECSSCSSCCEEEEEES
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc------------cceeccCC-CceeeeEeecCCCCCcEEEEEcC
Confidence 4557777775 34455556679999999643211 11111111 23444444321 3444455
Q ss_pred CCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCc---eEEEEecCCeEEEEECCCCCccC-CCC---C
Q 013365 89 SCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS---HCLAVTVEGEVQSWGRNQNGQLG-LGT---T 161 (444)
Q Consensus 89 ~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~---h~~~lt~~G~vy~wG~n~~gqlG-~~~---~ 161 (444)
+ |.|+.|-...... ...+.. ....|..++.... ..+.-..+|.|+.|-.......- .-. .
T Consensus 165 ~-~~v~~~d~~~~~~-----------~~~~~~-~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 231 (408)
T 4a11_B 165 G-PKVQLCDLKSGSC-----------SHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231 (408)
T ss_dssp S-SSEEEEESSSSCC-----------CEEECC-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT
T ss_pred C-CeEEEEeCCCcce-----------eeeecC-CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc
Confidence 5 8999996532211 111111 2336777776543 25566789999999754322110 000 0
Q ss_pred CCcccceeeecccCCcEEEEEeCC--CeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecC
Q 013365 162 EDSLVPQKLQAFEGVSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW 239 (444)
Q Consensus 162 ~~~~~p~~v~~~~~~~i~~ia~G~--~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~ 239 (444)
................|..++... .+.+....||.|+.|-......+-....... ........+.......
T Consensus 232 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 304 (408)
T 4a11_B 232 KKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVC-------NNSKKGLKFTVSCGCS 304 (408)
T ss_dssp CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCC-------CCCSSCCCCEECCSSS
T ss_pred ccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccc-------ccccccceeEEecCCC
Confidence 000000000011123566666643 4566667899999997554322111000000 0000011111112223
Q ss_pred ceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCC--CceeEEeCCCcEEEeecCCCc
Q 013365 240 RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW--RHTMAVTSDGKLYGWGWNKFG 312 (444)
Q Consensus 240 ~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~~~~~lt~~g~vy~wG~n~~g 312 (444)
...++...++.|+.|-...... ...+.. ....|..++... .+.+.-..||.|+.|-....-
T Consensus 305 ~~~~~~~~~~~i~v~d~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 305 SEFVFVPYGSTIAVYTVYSGEQ-----------ITMLKG-HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp SCEEEEEETTEEEEEETTTCCE-----------EEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred ceEEEEecCCEEEEEECcCCcc-----------eeeecc-CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 4455556778888886432111 111111 122365555443 344445679999999765543
No 79
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=55.36 E-value=1.2e+02 Score=27.32 Aligned_cols=196 Identities=12% Similarity=0.101 Sum_probs=99.8
Q ss_pred cEEEEEecCCe--eEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeeccc--CCCCEEEEEeC----CceEEEEecCC
Q 013365 72 EIVSVTCGADH--TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACG----DSHCLAVTVEG 143 (444)
Q Consensus 72 ~i~~i~~G~~~--~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~Ia~G----~~h~~~lt~~G 143 (444)
.|..++...+. .+.-..+ |.|+.|-.... ....+..+ ....|..++.. ....+.-..||
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSD-KTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp CEEEEEECSSSSEEEEEETT-SCEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cEEEEEEcCCCCEEEEEECC-CcEEEEecCCC------------cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 46666665433 3333345 88988854210 11222222 23368888765 45666677899
Q ss_pred eEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCC----CeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccce
Q 013365 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA----EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIP 219 (444)
Q Consensus 144 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~----~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p 219 (444)
.|+.|-.... ...+..........|..++... ...+....+|.|..|-...... ..+
T Consensus 80 ~v~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------~~~ 140 (379)
T 3jrp_A 80 KVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSP 140 (379)
T ss_dssp CEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---------CCE
T ss_pred EEEEEEcCCC----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---------eee
Confidence 9999964321 0001111111233577776653 3566667899999996433211 011
Q ss_pred eeeeeeecCCCeEEEEEec---------------CceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcE
Q 013365 220 EKVATVDLQREKMVMVACG---------------WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFI 284 (444)
Q Consensus 220 ~~v~~~~~~~~~i~~Ia~G---------------~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i 284 (444)
. .+......|..++.. ....++-..+|.|+.|-..... ....+..........|
T Consensus 141 ~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 141 I---IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWV 209 (379)
T ss_dssp E---EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCE
T ss_pred E---EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC--------cceeeEEEEecccCcE
Confidence 1 111123345555543 3455666788999988532110 1111111111122346
Q ss_pred EEEecCCC-----ceeEEeCCCcEEEeecCC
Q 013365 285 SQISGGWR-----HTMAVTSDGKLYGWGWNK 310 (444)
Q Consensus 285 ~~i~~G~~-----~~~~lt~~g~vy~wG~n~ 310 (444)
..++.... ..+....+|.|..|-...
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 66665433 344456789999996543
No 80
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=55.10 E-value=1.2e+02 Score=27.50 Aligned_cols=217 Identities=14% Similarity=0.109 Sum_probs=110.9
Q ss_pred EecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCC--eeeccCCCCcEEEEEe-----cCCeeEEEEcCCCEEEEE
Q 013365 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP--TQLSALDGHEIVSVTC-----GADHTTAYSESCMQVYSW 96 (444)
Q Consensus 24 ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P--~~v~~~~~~~i~~i~~-----G~~~~~~l~~~~g~v~~w 96 (444)
++....+.+++++.|++|.+-...--..+ ....-.| ..+...++..|+.+.. ...+.++++++ |.+.-.
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~---~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~-G~~Krt 124 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEAT---RGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATAN-GTVKKT 124 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCC---SSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETT-SEEEEE
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCC---CCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCC-CeEEEE
Confidence 45567888999999999977543321111 1111111 1222234556777654 23356777887 988876
Q ss_pred eCCCCCccCCCCCCCceeeeeecccCCCCEEEE--EeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeeccc
Q 013365 97 GWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFE 174 (444)
Q Consensus 97 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I--a~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~ 174 (444)
-..++-.... . --..+....+..++.+ ..+.++.+++|++|+++-+-...--.+|...... ..+..-+
T Consensus 125 ~l~e~~~~~r---~---G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv----~~i~L~~ 194 (307)
T 1zi0_A 125 VLTEFNRLRT---A---GKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV----RGIRLGE 194 (307)
T ss_dssp EGGGGTTCCT---T---CEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE----ECCCCCT
T ss_pred EHHHhhcccc---C---CeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe----EeEEeCC
Confidence 5433321110 0 0011112233455544 3356789999999999999766544444322211 1122224
Q ss_pred CCcEEEEEeC--CCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEe--cCceEEEEeCCCC
Q 013365 175 GVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC--GWRHTISVSSSGR 250 (444)
Q Consensus 175 ~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~--G~~hs~~lt~~G~ 250 (444)
+..|+.+..- ....+++|++|.+--.-...+-.-+.+.. -.++..+......++.+.. .....++++++|.
T Consensus 195 ~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k-----G~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~ 269 (307)
T 1zi0_A 195 GDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK-----GVISIKVTERNGLVVGAVQVDDCDQIMMITDAGT 269 (307)
T ss_dssp TCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSC-----CEESSCCCTTTCSEEEEEEECTTCEEEEEESSCC
T ss_pred CCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCC-----CEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCc
Confidence 5567766542 34567788888655443322211111100 0011111111234444433 4566788999999
Q ss_pred EEEEeCCCC
Q 013365 251 LYSYGWSKY 259 (444)
Q Consensus 251 vy~~G~n~~ 259 (444)
+.-+--+..
T Consensus 270 ~ir~~~~~i 278 (307)
T 1zi0_A 270 LVRTRVSEI 278 (307)
T ss_dssp EEEEEGGGS
T ss_pred EEEEecccc
Confidence 887654443
No 81
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=54.09 E-value=87 Score=28.16 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=12.4
Q ss_pred CCceeEEeCCCcEEEeec
Q 013365 291 WRHTMAVTSDGKLYGWGW 308 (444)
Q Consensus 291 ~~~~~~lt~~g~vy~wG~ 308 (444)
..|+++. .+++||++|-
T Consensus 150 ~~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 150 YGHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp ESCEEEE-ETTEEEEECC
T ss_pred cccEEEE-ECCEEEEEcC
Confidence 3566665 6789999984
No 82
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=53.77 E-value=1.2e+02 Score=26.92 Aligned_cols=17 Identities=12% Similarity=0.378 Sum_probs=11.9
Q ss_pred CCeEEEEeCCCCEEEeeC
Q 013365 185 AEHSVAVAEDGELYGWGW 202 (444)
Q Consensus 185 ~~h~~~Lt~~G~vy~wG~ 202 (444)
..|++++. +++||++|-
T Consensus 192 ~~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 192 KNHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred hcceEEEE-CCEEEEEeC
Confidence 35666555 789999983
No 83
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=53.65 E-value=1.2e+02 Score=27.00 Aligned_cols=151 Identities=16% Similarity=0.147 Sum_probs=83.7
Q ss_pred CCCCCEEEEecCCC-----ceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCC--eeEEEEc
Q 013365 16 APFRPVLLISAGAS-----HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSE 88 (444)
Q Consensus 16 ~~~~~i~~ia~G~~-----~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~--~~~~l~~ 88 (444)
.....|..|+.... ..+.-..||.|..|-....++ .....+.. ....|..++...+ +.+....
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------EEEEEEEE-CSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------eeEEEecc-ccCCEEEEEECcCCCEEEEEcC
Confidence 34567888887654 333345789999996543211 11122221 1235777776543 4455556
Q ss_pred CCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEe--CC--ceEEEEecCCeEEEEECCCCCccCCCCCCCc
Q 013365 89 SCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDS 164 (444)
Q Consensus 89 ~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~--G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~ 164 (444)
+ |.|..|-.... ....+.. ....|..++. .. .+.+.-..||.|+.|-.....
T Consensus 107 d-g~v~iwd~~~~------------~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------- 162 (368)
T 3mmy_A 107 D-KTAKMWDLSSN------------QAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN---------- 162 (368)
T ss_dssp T-SEEEEEETTTT------------EEEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS----------
T ss_pred C-CcEEEEEcCCC------------Cceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc----------
Confidence 6 99999965422 1111111 2336777775 33 335555678999999543211
Q ss_pred ccceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEeeCC
Q 013365 165 LVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWG 203 (444)
Q Consensus 165 ~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n 203 (444)
....+.. ...+..+..-....++.+.++.++.|-..
T Consensus 163 -~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 163 -PMMVLQL--PERCYCADVIYPMAVVATAERGLIVYQLE 198 (368)
T ss_dssp -CSEEEEC--SSCEEEEEEETTEEEEEEGGGCEEEEECS
T ss_pred -EEEEEec--CCCceEEEecCCeeEEEeCCCcEEEEEec
Confidence 0111111 12455555556778888889999998653
No 84
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=51.53 E-value=1.5e+02 Score=27.29 Aligned_cols=222 Identities=9% Similarity=-0.000 Sum_probs=108.7
Q ss_pred EEecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeC-----CceEEEEecCCeEEEEEC
Q 013365 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGR 150 (444)
Q Consensus 76 i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G-----~~h~~~lt~~G~vy~wG~ 150 (444)
++...++.+++++. |++|..-..+.-..+... ........+....+++|+.+..- ..+.+++|++|.+.-.-.
T Consensus 46 ~~~t~d~ll~fT~~-Gr~~~~~~~elp~~~r~a-~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l 123 (323)
T 1wp5_A 46 EMNTKDVLLLFTNK-GNYLYCPVHELPDIRWKD-LGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTEL 123 (323)
T ss_dssp EEETTSEEEEEETT-SEEEEEEGGGSCBCCTTS-CCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECC-CEEEEEEHHHCcCCCCCC-CCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEH
Confidence 55667788888888 999998765433322211 01111111222356678776443 235888999998887764
Q ss_pred CCCCccCCCCCCCcccceeeecccCCcEEE--EEeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecC
Q 013365 151 NQNGQLGLGTTEDSLVPQKLQAFEGVSIKM--VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQ 228 (444)
Q Consensus 151 n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--ia~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~ 228 (444)
..+-.... ..- -..+...++..++. +..+.++.+++|++|+++-+-.+..-.+|.... ..+...+. .
T Consensus 124 ~e~~~~~r---~~G--~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~-----GV~~i~L~-~ 192 (323)
T 1wp5_A 124 KHYKAQRY---SKP--LTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAA-----GVKGMNLK-E 192 (323)
T ss_dssp GGGCCSCC---SSC--EECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCC-----CEECCCCC-T
T ss_pred HHhhhccc---cCc--eEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCc-----CEEEEEeC-C
Confidence 43321110 000 00111112233333 334678899999999999887655433332111 11111111 1
Q ss_pred CCeEEEEEec--Cc-eEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEE--EecCCCceeEEeCCCcE
Q 013365 229 REKMVMVACG--WR-HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ--ISGGWRHTMAVTSDGKL 303 (444)
Q Consensus 229 ~~~i~~Ia~G--~~-hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~--i~~G~~~~~~lt~~g~v 303 (444)
++.|+.+..= .. ..+.++++|...-.--..+-.-+.+. .-...+...+. .+..+.. +..+....++++++|.+
T Consensus 193 ~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~-kGv~~~~~~~~-~~~~l~~~~~v~~~~~i~~it~~g~~ 270 (323)
T 1wp5_A 193 GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAK-RGVVILRELKA-NPHRISGFVVAQDSDTIYLQTEKSFI 270 (323)
T ss_dssp TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTS-CCEECSCCCSS-SCCCEEEEEEECTTCEEEEEETTSCE
T ss_pred CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCC-CCEECeeecCC-CCceEEEEEEeCCCCeEEEEeCCCeE
Confidence 3455555321 22 56677777764433322222111111 01111111111 1112332 23456778889999988
Q ss_pred EEeecCCCc
Q 013365 304 YGWGWNKFG 312 (444)
Q Consensus 304 y~wG~n~~g 312 (444)
.-.-.++..
T Consensus 271 ir~~~~~i~ 279 (323)
T 1wp5_A 271 ETIKVGDIR 279 (323)
T ss_dssp EEEEGGGSC
T ss_pred EEEEhhhcC
Confidence 766544433
No 85
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=51.19 E-value=1.4e+02 Score=26.89 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=12.3
Q ss_pred ceEEEEeCCCCEEEEeC
Q 013365 240 RHTISVSSSGRLYSYGW 256 (444)
Q Consensus 240 ~hs~~lt~~G~vy~~G~ 256 (444)
-+.++++.+|+||+...
T Consensus 294 p~~ia~~~dG~lyvad~ 310 (329)
T 3fvz_A 294 PHDIVASEDGTVYIGDA 310 (329)
T ss_dssp EEEEEECTTSEEEEEES
T ss_pred eeEEEECCCCCEEEEEC
Confidence 35677888888887654
No 86
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=50.94 E-value=2.2e+02 Score=29.14 Aligned_cols=190 Identities=15% Similarity=0.109 Sum_probs=96.2
Q ss_pred CCEEEEec--CCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCC--eeEEEEcCCCEEE
Q 013365 19 RPVLLISA--GASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVY 94 (444)
Q Consensus 19 ~~i~~ia~--G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~--~~~~l~~~~g~v~ 94 (444)
..|..++. .....+....||.|.+|-...... ...+..- ...|..++...+ +.+....+ |.|.
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-----------~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-g~i~ 122 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-----------VVDFEAH-PDYIRSIAVHPTKPYVLSGSDD-LTVK 122 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-----------EEEEECC-SSCEEEEEECSSSSEEEEEETT-SEEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------EEEEecC-CCCEEEEEEeCCCCEEEEEcCC-CEEE
Confidence 34555543 344455556788999886543211 1112111 234666666543 33444555 8999
Q ss_pred EEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCC---ceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeee
Q 013365 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD---SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (444)
Q Consensus 95 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~---~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 171 (444)
.|-..... ............|..++... ...+..+.+|.|+.|-..... ....+.
T Consensus 123 vw~~~~~~-----------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~ 180 (814)
T 3mkq_A 123 LWNWENNW-----------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLT 180 (814)
T ss_dssp EEEGGGTS-----------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEE
T ss_pred EEECCCCc-----------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEe
Confidence 99643211 11111111233677777653 455566778999999643211 011111
Q ss_pred cccCCcEEEEEe----CCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecC--ceEEEE
Q 013365 172 AFEGVSIKMVAA----GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RHTISV 245 (444)
Q Consensus 172 ~~~~~~i~~ia~----G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~--~hs~~l 245 (444)
......+..++. .....+.-..+|.|+.|-... ...+..+......|..++... ...+..
T Consensus 181 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 246 (814)
T 3mkq_A 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT--------------KSCVATLEGHMSNVSFAVFHPTLPIIISG 246 (814)
T ss_dssp CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT--------------TEEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC--------------CcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 111122333333 344556666889999995322 111222222234566665443 345556
Q ss_pred eCCCCEEEEeCC
Q 013365 246 SSSGRLYSYGWS 257 (444)
Q Consensus 246 t~~G~vy~~G~n 257 (444)
..+|.|+.|-..
T Consensus 247 ~~dg~v~vwd~~ 258 (814)
T 3mkq_A 247 SEDGTLKIWNSS 258 (814)
T ss_dssp ETTSCEEEEETT
T ss_pred eCCCeEEEEECC
Confidence 678999999654
No 87
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=50.43 E-value=1.7e+02 Score=27.69 Aligned_cols=109 Identities=8% Similarity=0.117 Sum_probs=63.8
Q ss_pred cCCeeeccCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEE
Q 013365 60 LSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAV 139 (444)
Q Consensus 60 ~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~l 139 (444)
..|.....+.. |.+|++ ....+++.++ +.|..|--....+. ..+..+ ...+.++.+-....+++
T Consensus 79 ~~~~~~~~lp~--V~~l~f-d~~~L~v~~~-~~l~v~dv~sl~~~-----------~~~~~~-~~~v~~i~~~~p~~av~ 142 (388)
T 1xip_A 79 LTFKWEKEIPD--VIFVCF-HGDQVLVSTR-NALYSLDLEELSEF-----------RTVTSF-EKPVFQLKNVNNTLVIL 142 (388)
T ss_dssp CCCSEEEECTT--EEEEEE-ETTEEEEEES-SEEEEEESSSTTCE-----------EEEEEC-SSCEEEEEECSSEEEEE
T ss_pred ccceEEeeCCC--eeEEEE-CCCEEEEEcC-CcEEEEEchhhhcc-----------Ccccee-ecceeeEEecCCCEEEE
Confidence 34533334543 899999 6677777777 99999965433221 111111 22466666666568888
Q ss_pred ecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEe
Q 013365 140 TVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGW 200 (444)
Q Consensus 140 t~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~w 200 (444)
+.+|.|+.|--... ++ . .+. ..|..|+-...-.++...||++..|
T Consensus 143 ~~dG~L~v~dl~~~-~~---------~--~~~----~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 143 NSVNDLSALDLRTK-ST---------K--QLA----QNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp ETTSEEEEEETTTC-CE---------E--EEE----ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred ECCCCEEEEEccCC-cc---------c--ccc----CCceEEEEcCCceEEEEcCCcEEEE
Confidence 99999999954321 11 0 111 2466666665555555666666655
No 88
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=49.98 E-value=1.4e+02 Score=26.56 Aligned_cols=237 Identities=11% Similarity=0.095 Sum_probs=114.9
Q ss_pred CCCEEEEecCCCc-eEEEEc-----CCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCC----e-eEEE
Q 013365 18 FRPVLLISAGASH-SVALLS-----GNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD----H-TTAY 86 (444)
Q Consensus 18 ~~~i~~ia~G~~~-~~~l~~-----~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~----~-~~~l 86 (444)
...|.+|+.-... .+++.. ||.|+.|-..... ..+.... -....|..++...+ . .+.-
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~----------~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD----------LKLLREI-EKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS----------EEEEEEE-EESSCEEEEECTTCCTTTCCEEEE
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc----------ccceeee-cccCcEEEEEEcCCCCCCceEEEe
Confidence 4467777765433 333333 7889888543211 1111110 11235777777654 3 3334
Q ss_pred EcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEe--------CCceEEEEecCCeEEEEECCCCCccCC
Q 013365 87 SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--------GDSHCLAVTVEGEVQSWGRNQNGQLGL 158 (444)
Q Consensus 87 ~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~--------G~~h~~~lt~~G~vy~wG~n~~gqlG~ 158 (444)
..+ |.|..|-.....+ ....+. .....|..+.. ...+.+.-..+|.|+.|-......
T Consensus 87 ~~d-g~i~iwd~~~~~~----------~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~--- 151 (357)
T 3i2n_A 87 DFG-GNLHIWNLEAPEM----------PVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD--- 151 (357)
T ss_dssp ETT-SCEEEECTTSCSS----------CSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS---
T ss_pred cCC-CeEEEEeCCCCCc----------cEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC---
Confidence 445 9999996543210 001111 12235666632 234566667889999996433210
Q ss_pred CCCCCcccceeeeccc---CCcEEEEE------eCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCC
Q 013365 159 GTTEDSLVPQKLQAFE---GVSIKMVA------AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQR 229 (444)
Q Consensus 159 ~~~~~~~~p~~v~~~~---~~~i~~ia------~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~ 229 (444)
....+.... ...+..++ ......+.-..+|.|+.|-.... .+... .. ..
T Consensus 152 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------~~~~~--~~-~~ 209 (357)
T 3i2n_A 152 -------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM------------ALRWE--TN-IK 209 (357)
T ss_dssp -------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT------------EEEEE--EE-CS
T ss_pred -------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC------------ceeee--cC-CC
Confidence 011111111 22455555 34445556667899999964321 01111 11 12
Q ss_pred CeEEEEEec-----CceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCCC---ceeEEeCCC
Q 013365 230 EKMVMVACG-----WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR---HTMAVTSDG 301 (444)
Q Consensus 230 ~~i~~Ia~G-----~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~---~~~~lt~~g 301 (444)
..|..++.. ....++-..+|.|+.|-...... ......... ......|..++.... ..+.-..+|
T Consensus 210 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg 282 (357)
T 3i2n_A 210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP------TKGFASVSE-KAHKSTVWQVRHLPQNRELFLTAGGAG 282 (357)
T ss_dssp SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET------TTEEEEEEE-ECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc------ccceeeecc-CCCcCCEEEEEECCCCCcEEEEEeCCC
Confidence 356666554 34555566788888885322110 001100011 112234666665443 334446789
Q ss_pred cEEEeecC
Q 013365 302 KLYGWGWN 309 (444)
Q Consensus 302 ~vy~wG~n 309 (444)
.|+.|-..
T Consensus 283 ~i~iwd~~ 290 (357)
T 3i2n_A 283 GLHLWKYE 290 (357)
T ss_dssp EEEEEEEE
T ss_pred cEEEeecC
Confidence 99999754
No 89
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=49.79 E-value=1.4e+02 Score=26.64 Aligned_cols=62 Identities=16% Similarity=0.166 Sum_probs=30.8
Q ss_pred CCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEe----cCceEEEEeCCCCEEEEeC
Q 013365 185 AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC----GWRHTISVSSSGRLYSYGW 256 (444)
Q Consensus 185 ~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~----G~~hs~~lt~~G~vy~~G~ 256 (444)
..|++++. +++||++|-... . .......+..++....+...+.. -..|+++. .+++||++|-
T Consensus 101 ~~~~~~~~-~~~iyv~GG~~~-------~-~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 101 CLFGLGEV-DDKIYVVAGKDL-------Q-TEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp CSCEEEEE-TTEEEEEEEEBT-------T-TCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECC
T ss_pred cccceEEE-CCEEEEEcCccC-------C-CCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcC
Confidence 35666555 789999983211 0 00111122222322333333321 13566665 5889999984
No 90
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=49.58 E-value=1.4e+02 Score=26.52 Aligned_cols=199 Identities=11% Similarity=0.058 Sum_probs=96.5
Q ss_pred CCCEEEEecCCC-----ceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEe--------cCCeeE
Q 013365 18 FRPVLLISAGAS-----HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTC--------GADHTT 84 (444)
Q Consensus 18 ~~~i~~ia~G~~-----~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~--------G~~~~~ 84 (444)
...|..++.... ..+.-..||.|..|-..... .....+... ...|..+.. ...+.+
T Consensus 65 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~-~~~v~~~~~~~~~~~s~~~~~l~ 133 (357)
T 3i2n_A 65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE----------MPVYSVKGH-KEIINAIDGIGGLGIGEGAPEIV 133 (357)
T ss_dssp SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS----------SCSEEECCC-SSCEEEEEEESGGGCC-CCCEEE
T ss_pred cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC----------ccEEEEEec-ccceEEEeeccccccCCCccEEE
Confidence 446666665543 33444568888888543321 011112211 234555532 233444
Q ss_pred EEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEE------eCCceEEEEecCCeEEEEECCCCCccCC
Q 013365 85 AYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA------CGDSHCLAVTVEGEVQSWGRNQNGQLGL 158 (444)
Q Consensus 85 ~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia------~G~~h~~~lt~~G~vy~wG~n~~gqlG~ 158 (444)
.-..+ |.|+.|-...... ...............+..++ ......+.-..+|.|+.|-.....
T Consensus 134 ~~~~d-~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---- 201 (357)
T 3i2n_A 134 TGSRD-GTVKVWDPRQKDD-------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA---- 201 (357)
T ss_dssp EEETT-SCEEEECTTSCSS-------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE----
T ss_pred EEeCC-CeEEEEeCCCCCC-------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc----
Confidence 45556 8999996433210 00010111111122566666 234455666778999999653311
Q ss_pred CCCCCcccceeeecccCCcEEEEEeC-----CCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEE
Q 013365 159 GTTEDSLVPQKLQAFEGVSIKMVAAG-----AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMV 233 (444)
Q Consensus 159 ~~~~~~~~p~~v~~~~~~~i~~ia~G-----~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~ 233 (444)
+...... ...|..++.. ....++-..+|.|+.|-......+ ... ....+......|.
T Consensus 202 --------~~~~~~~-~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~--~~~~~~~~~~~v~ 263 (357)
T 3i2n_A 202 --------LRWETNI-KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT-------KGF--ASVSEKAHKSTVW 263 (357)
T ss_dssp --------EEEEEEC-SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT-------TEE--EEEEEECCSSCEE
T ss_pred --------eeeecCC-CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc-------cce--eeeccCCCcCCEE
Confidence 1111111 2356666654 355566678899998853221000 000 0001112244677
Q ss_pred EEEecCc---eEEEEeCCCCEEEEeCC
Q 013365 234 MVACGWR---HTISVSSSGRLYSYGWS 257 (444)
Q Consensus 234 ~Ia~G~~---hs~~lt~~G~vy~~G~n 257 (444)
.++.... ..+.-..+|.|+.|-..
T Consensus 264 ~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 264 QVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred EEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 7766544 34445678889888643
No 91
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=47.69 E-value=2.5e+02 Score=28.76 Aligned_cols=231 Identities=14% Similarity=0.091 Sum_probs=113.0
Q ss_pred CCEEEEecCC--CceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEec--CCeeEEEEcCCCEEE
Q 013365 19 RPVLLISAGA--SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQVY 94 (444)
Q Consensus 19 ~~i~~ia~G~--~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G--~~~~~~l~~~~g~v~ 94 (444)
.+|..|+... ...++-..+|.|.+|-..... ....+... ...|..++.. ....+....+ |.|+
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-----------~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-g~i~ 80 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-----------EVRSIQVT-ETPVRAGKFIARKNWIIVGSDD-FRIR 80 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----------EEEEEECC-SSCEEEEEEEGGGTEEEEEETT-SEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----------eEEEEecC-CCcEEEEEEeCCCCEEEEEeCC-CeEE
Confidence 3566666543 334444578899999543211 11112211 2345555543 3445555566 9999
Q ss_pred EEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCc--eEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeec
Q 013365 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS--HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA 172 (444)
Q Consensus 95 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~--h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~ 172 (444)
.|-...... ...+.. ....|..++.... +.+.-+.+|.|..|-..... .....+.
T Consensus 81 vw~~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----------~~~~~~~- 137 (814)
T 3mkq_A 81 VFNYNTGEK-----------VVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----------ALEQTFE- 137 (814)
T ss_dssp EEETTTCCE-----------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS----------EEEEEEE-
T ss_pred EEECCCCcE-----------EEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc----------eEEEEEc-
Confidence 996543211 111111 2235777776543 45556778999999643210 0011111
Q ss_pred ccCCcEEEEEeCC---CeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEe----cCceEEEE
Q 013365 173 FEGVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC----GWRHTISV 245 (444)
Q Consensus 173 ~~~~~i~~ia~G~---~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~----G~~hs~~l 245 (444)
.....|..++... ...+.-..+|.|+.|-..... ....+.... ...+..++. .....+.-
T Consensus 138 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTTGQ--ERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEECCC--TTCCCEEEECCSTTCCEEEEE
T ss_pred CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEecCC--CCCEEEEEEEECCCCCEEEEE
Confidence 1123466666533 345556678999999642210 001111111 123333333 33455556
Q ss_pred eCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCC--CceeEEeCCCcEEEeecCC
Q 013365 246 SSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW--RHTMAVTSDGKLYGWGWNK 310 (444)
Q Consensus 246 t~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~~~~~lt~~g~vy~wG~n~ 310 (444)
..+|.|+.|-... + .....+.. ....|..++... ...+....+|.|+.|-...
T Consensus 205 ~~dg~i~~~d~~~-~----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 205 SDDLTIKIWDYQT-K----------SCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp CTTSEEEEEETTT-T----------EEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred eCCCEEEEEECCC-C----------cEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 6788888885321 1 11111211 122366555443 3344456789999996544
No 92
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=47.18 E-value=1.7e+02 Score=26.88 Aligned_cols=151 Identities=15% Similarity=0.108 Sum_probs=79.0
Q ss_pred EEecCCeeEEEE---cCCCEEEEEeCCCCCccCCCCCCCceeeeeeccc--CCCCEEEEEeC---CceEEEEecCCeEEE
Q 013365 76 VTCGADHTTAYS---ESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACG---DSHCLAVTVEGEVQS 147 (444)
Q Consensus 76 i~~G~~~~~~l~---~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~Ia~G---~~h~~~lt~~G~vy~ 147 (444)
+++..++..++. .+ |.|+.|-....+.+. ..+..+ ....|..++.. ....+.-..||.|..
T Consensus 40 ~~~~~~~~~~~~~~~~~-g~i~v~~~~~~~~~~----------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~v 108 (402)
T 2aq5_A 40 CAVNPKFMALICEASGG-GAFLVLPLGKTGRVD----------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMV 108 (402)
T ss_dssp EEECSSEEEEEBCCSSS-CCEEEEETTCCEECC----------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred EEECCCeEEEEEEEcCC-CEEEEEECccCCCCC----------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEE
Confidence 555666655552 35 899999765544321 111111 12367777764 345555677999999
Q ss_pred EECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCCC---eEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeee
Q 013365 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVAT 224 (444)
Q Consensus 148 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~---h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~ 224 (444)
|-....+... ....+..........|..++.... ..+.-..||.|+.|-.... ..+..
T Consensus 109 w~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~--------------~~~~~ 169 (402)
T 2aq5_A 109 WEIPDGGLVL-----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG--------------AAVLT 169 (402)
T ss_dssp EECCTTCCSS-----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT--------------EEEEE
T ss_pred EEccCCCCcc-----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC--------------CccEE
Confidence 9755432111 000111111112235777766543 3445568999999964321 11222
Q ss_pred e--ecCCCeEEEEEec--CceEEEEeCCCCEEEEeC
Q 013365 225 V--DLQREKMVMVACG--WRHTISVSSSGRLYSYGW 256 (444)
Q Consensus 225 ~--~~~~~~i~~Ia~G--~~hs~~lt~~G~vy~~G~ 256 (444)
+ ......|..++.. ....+.-..+|.|+.|-.
T Consensus 170 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 170 LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp ECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred EecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 2 1123456666553 334455567888888854
No 93
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=45.59 E-value=2.7e+02 Score=28.63 Aligned_cols=241 Identities=11% Similarity=0.050 Sum_probs=116.2
Q ss_pred cEEEEEecCC--eeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeeccc--CCCCEEEEEeC----CceEEEEecCC
Q 013365 72 EIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACG----DSHCLAVTVEG 143 (444)
Q Consensus 72 ~i~~i~~G~~--~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~Ia~G----~~h~~~lt~~G 143 (444)
.|..++...+ +.+.-..+ |.|..|-.... ....+..+ ....|..++.. ....+.-..||
T Consensus 11 ~V~~l~~s~dg~~latg~~d-g~I~vwd~~~~------------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSD-KTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp CEEEECCCSSSCCEEEEETT-TEEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred eeEEEEECCCCCeEEEEECC-CcEEEEecCCC------------CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 3555554432 33333456 99999953210 11122222 23368888764 45566777899
Q ss_pred eEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCC----CeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccce
Q 013365 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA----EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIP 219 (444)
Q Consensus 144 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~----~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p 219 (444)
.|+.|-.... ...+..........|..++... ...+.-+.||.|+.|-....... ..
T Consensus 78 ~I~vwd~~~~----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~---------~~ 138 (753)
T 3jro_A 78 KVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---------SP 138 (753)
T ss_dssp CEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC---------CC
T ss_pred eEEEEECCCC----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc---------ce
Confidence 9999964321 0001111111233577776653 45666778999999964332110 01
Q ss_pred eeeeeeecCCCeEEEEEec---------------CceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcE
Q 013365 220 EKVATVDLQREKMVMVACG---------------WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFI 284 (444)
Q Consensus 220 ~~v~~~~~~~~~i~~Ia~G---------------~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i 284 (444)
.. +......|..++.. ....+.-..+|.|+.|-..... ....+..........|
T Consensus 139 ~~---~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~--------~~~~~~~~~~~h~~~V 207 (753)
T 3jro_A 139 II---IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWV 207 (753)
T ss_dssp EE---EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCE
T ss_pred eE---eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc--------ccceeeeeecCCCCcE
Confidence 11 11112345555443 3445566778989888532211 1111111111123347
Q ss_pred EEEecCCC-----ceeEEeCCCcEEEeecCCCcccccCCCCCccCceEeccCCCcEEe--cCCeeEEEeCCCCEEEEeCC
Q 013365 285 SQISGGWR-----HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQISC--GWRHTLAVTERQNVFSWGRG 357 (444)
Q Consensus 285 ~~i~~G~~-----~~~~lt~~g~vy~wG~n~~gqlG~g~~~~~~~p~~v~~~~~~i~~--G~~h~~~l~~~g~v~~wG~n 357 (444)
..++.... ..+.-..+|.|+.|-.......-. ...............++. ...+.+.-..||.|+.|=.+
T Consensus 208 ~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~---~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 208 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK---KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp EEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCB---CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred EEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcce---eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 77765533 344446789999996543211000 000000001111223333 22344445678999999655
Q ss_pred C
Q 013365 358 T 358 (444)
Q Consensus 358 ~ 358 (444)
.
T Consensus 285 ~ 285 (753)
T 3jro_A 285 L 285 (753)
T ss_dssp S
T ss_pred C
Confidence 3
No 94
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=43.94 E-value=1.9e+02 Score=26.33 Aligned_cols=218 Identities=7% Similarity=0.049 Sum_probs=112.1
Q ss_pred CCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEE--EeCCceEEEEecCCeEEEEECCCCCccC
Q 013365 80 ADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLG 157 (444)
Q Consensus 80 ~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I--a~G~~h~~~lt~~G~vy~wG~n~~gqlG 157 (444)
..+.++++.+ |.+--.-...+.....+. .-...+..-.+..+..+ +.+.++.+++|+.|++|.+-...--..+
T Consensus 8 e~~~v~~T~~-G~iKr~~~~~~~~~~~~~----~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 8 ENIVVMLTKK-GFLKRLSQNEYKLQGTGG----KGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp CEEEEEEETT-CBEEEEEGGGSCBCCSSC----CCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--
T ss_pred CCEEEEEeCC-CEEEEeEHHHhhccccCC----CCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCC
Confidence 4457778888 888766443332211110 01111222234445553 4567789999999999999754432222
Q ss_pred CCCCCCcccceeeecccCCcEEEEEeC-----CCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeE
Q 013365 158 LGTTEDSLVPQKLQAFEGVSIKMVAAG-----AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKM 232 (444)
Q Consensus 158 ~~~~~~~~~p~~v~~~~~~~i~~ia~G-----~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i 232 (444)
..... ......+...++..|+.+... ..+.+++|++|.++-.-...+-.. ...-.....+.. +..+
T Consensus 83 r~~~G-~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~-------r~~G~~~i~L~~-~d~l 153 (312)
T 1suu_A 83 RASKG-QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV-------KSRGVIVIKLND-KDFV 153 (312)
T ss_dssp ------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-----------CEECBCCCT-TCCE
T ss_pred ccCCC-cChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhcc-------CCCcEEEEecCC-CCEE
Confidence 11111 011122333345677776553 456899999999998765443110 000011111221 3445
Q ss_pred EEEEe--cCceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEec--CCCceeEEeCCCcEEEeec
Q 013365 233 VMVAC--GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISG--GWRHTMAVTSDGKLYGWGW 308 (444)
Q Consensus 233 ~~Ia~--G~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~lt~~g~vy~wG~ 308 (444)
+.+.. +..+.++++++|.+.-+-.++.-..|.....- ..+....+..|..+.. ...+.++++++|.+...-.
T Consensus 154 v~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv----~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 154 TSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGV----CGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp EEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCE----ECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCe----EeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence 54433 45678899999999888765544443321111 1111112334554432 3455778888888777666
Q ss_pred CCCcccc
Q 013365 309 NKFGQVG 315 (444)
Q Consensus 309 n~~gqlG 315 (444)
.++-..+
T Consensus 230 ~e~~~~~ 236 (312)
T 1suu_A 230 SKISELK 236 (312)
T ss_dssp GGSCBCC
T ss_pred HHhcccC
Confidence 5554433
No 95
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=43.03 E-value=2e+02 Score=26.42 Aligned_cols=152 Identities=14% Similarity=0.123 Sum_probs=78.5
Q ss_pred EecCCCceEEE---EcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCC--CCcEEEEEecC---CeeEEEEcCCCEEEE
Q 013365 24 ISAGASHSVAL---LSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALD--GHEIVSVTCGA---DHTTAYSESCMQVYS 95 (444)
Q Consensus 24 ia~G~~~~~~l---~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~--~~~i~~i~~G~---~~~~~l~~~~g~v~~ 95 (444)
+++......++ ..+|.|++|-.+..+.+. ..+..+. ...|..++... ...+.-..| |.|..
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~----------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~d-g~v~v 108 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVD----------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSED-CTVMV 108 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECC----------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETT-SEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCC----------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCC-CeEEE
Confidence 45555555554 357899999765544321 1111111 23577777643 344444556 99999
Q ss_pred EeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCCc---eEEEEecCCeEEEEECCCCCccCCCCCCCcccceeee-
Q 013365 96 WGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS---HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ- 171 (444)
Q Consensus 96 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~---h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~- 171 (444)
|-....+... ....+..........|..|+.... ..+.-..||.|+.|-..... ....+.
T Consensus 109 w~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~ 172 (402)
T 2aq5_A 109 WEIPDGGLVL-----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-----------AVLTLGP 172 (402)
T ss_dssp EECCTTCCSS-----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-----------EEEEECT
T ss_pred EEccCCCCcc-----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-----------ccEEEec
Confidence 9755432211 000111111112346778876543 45555778999999643210 011110
Q ss_pred cccCCcEEEEEeC--CCeEEEEeCCCCEEEeeC
Q 013365 172 AFEGVSIKMVAAG--AEHSVAVAEDGELYGWGW 202 (444)
Q Consensus 172 ~~~~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~ 202 (444)
......|..++.. ....+.-..||.|+.|-.
T Consensus 173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp TTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 1122356666654 334555567889998863
No 96
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=42.91 E-value=58 Score=29.91 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=13.1
Q ss_pred CceEEEEeCCCCEEEEeC
Q 013365 239 WRHTISVSSSGRLYSYGW 256 (444)
Q Consensus 239 ~~hs~~lt~~G~vy~~G~ 256 (444)
..|++++ .+++||++|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 4576666 7889999994
No 97
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=42.44 E-value=2.1e+02 Score=26.55 Aligned_cols=139 Identities=17% Similarity=0.155 Sum_probs=73.3
Q ss_pred CCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCC--CCcEEEEEecCC--eeEEEEcCCCEEEEEeCCCCCc
Q 013365 28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALD--GHEIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGR 103 (444)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~--~~~i~~i~~G~~--~~~~l~~~~g~v~~wG~n~~gq 103 (444)
..+.+++--|+.||+|=.... ....+-.+. ...|..|+...+ +.+.-..| |.|..|-.....
T Consensus 115 ~~n~lAvgld~tV~lWd~~tg------------~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D-g~v~iWd~~~~~- 180 (420)
T 4gga_A 115 SGNVLAVALDNSVYLWSASSG------------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-AEVQLWDVQQQK- 180 (420)
T ss_dssp TTSEEEEEETTEEEEEETTTC------------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-SCEEEEETTTTE-
T ss_pred CCCEEEEEeCCEEEEEECCCC------------CEEEEEEecCCCCcEEEEEECCCCCEEEEEECC-CeEEEEEcCCCc-
Confidence 345777778999999954321 111111121 234777776543 33334556 999999654321
Q ss_pred cCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEe
Q 013365 104 LGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAA 183 (444)
Q Consensus 104 lG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~ 183 (444)
+..........+..++......+.-..++.++.|-....... ...+.. ....+..+..
T Consensus 181 -----------~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~----------~~~~~~-h~~~~~~~~~ 238 (420)
T 4gga_A 181 -----------RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH----------VATLSG-HSQEVCGLRW 238 (420)
T ss_dssp -----------EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE----------EEEEEC-CSSCEEEEEE
T ss_pred -----------EEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeeccccee----------eEEecc-cccceeeeee
Confidence 111111123367777776666666778888888854321100 011111 1112333332
Q ss_pred --CCCeEEEEeCCCCEEEeeC
Q 013365 184 --GAEHSVAVAEDGELYGWGW 202 (444)
Q Consensus 184 --G~~h~~~Lt~~G~vy~wG~ 202 (444)
.....+....||.+..|-.
T Consensus 239 ~~~g~~l~s~~~D~~v~i~~~ 259 (420)
T 4gga_A 239 APDGRHLASGGNDNLVNVWPS 259 (420)
T ss_dssp CTTSSEEEEEETTSCEEEEES
T ss_pred cCCCCeeeeeeccccceEEee
Confidence 3445566678888888864
No 98
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=42.02 E-value=1.9e+02 Score=25.73 Aligned_cols=67 Identities=4% Similarity=-0.046 Sum_probs=37.3
Q ss_pred cEEEEEecC--CeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCC--ceEEEEecCCeEEE
Q 013365 72 EIVSVTCGA--DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQS 147 (444)
Q Consensus 72 ~i~~i~~G~--~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~--~h~~~lt~~G~vy~ 147 (444)
.+..++... .+.+.-..+ |.|+.|-....+ .+..........|..++... ...+..+.+|.|+.
T Consensus 177 ~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 244 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKD-GKISKYDVSNNY-----------EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFL 244 (369)
T ss_dssp CEEEEEECGGGCEEEEEETT-SEEEEEETTTTT-----------EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceeEEEEcCCCCEEEEEcCC-CEEEEEECCCCc-----------EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEE
Confidence 455555433 344444556 999999653311 11111112234677777643 34555667899999
Q ss_pred EEC
Q 013365 148 WGR 150 (444)
Q Consensus 148 wG~ 150 (444)
|-.
T Consensus 245 ~d~ 247 (369)
T 3zwl_B 245 VDV 247 (369)
T ss_dssp EET
T ss_pred EEC
Confidence 964
No 99
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=41.28 E-value=1.3e+02 Score=23.65 Aligned_cols=105 Identities=12% Similarity=0.139 Sum_probs=53.6
Q ss_pred EEEEEeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEE-eCCCeEEEEeCCCCEEEeeCCC
Q 013365 126 VKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVA-AGAEHSVAVAEDGELYGWGWGR 204 (444)
Q Consensus 126 i~~Ia~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia-~G~~h~~~Lt~~G~vy~wG~n~ 204 (444)
+.--.|...+.+-+..||+|-.-.... +...-..+....- .++.|. .-..+.+++..+|+||+--.
T Consensus 8 ~~~~~~~~g~~L~I~~dG~V~Gt~~~~----------~~~s~l~~~~v~~-G~V~I~g~~sg~yL~m~~~G~v~Gs~~-- 74 (132)
T 3q7x_A 8 VLLRSTETGQFLRINPDGTVDGTRDRS----------DPGIQFQISPEGN-GEVLLRSTETGQFLRINPDGTVDGTRD-- 74 (132)
T ss_dssp EEEEETTTCCEEEECTTSBEEEECCTT----------CGGGCEEEEEEET-TEEEEEETTTCCEEEECTTSBEEEECC--
T ss_pred heeeeccCcEEEEECCCCcEEeecCCC----------CCCcEEEEEeccc-CEEEEEEEcccEEEEECCCCCEeeccC--
Confidence 334456667777888899998754321 1111112222111 244443 34556788899999996421
Q ss_pred CCCcCCCCCCCccceeeeeeeecCCCeEEEE-EecCceEEEEeCCCCEEEE
Q 013365 205 YGNLGLGDRNDRLIPEKVATVDLQREKMVMV-ACGWRHTISVSSSGRLYSY 254 (444)
Q Consensus 205 ~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~I-a~G~~hs~~lt~~G~vy~~ 254 (444)
..+.....++.... ...+.| ..-....++++.+|++|.-
T Consensus 75 --------~s~ec~flE~~~~~---~g~v~ikg~~sg~YLamnk~G~lygs 114 (132)
T 3q7x_A 75 --------RSDPGIQFQISPEG---NGEVLLRSTETGQFLRINPDGTVDGT 114 (132)
T ss_dssp ---------CCGGGCEEEEEEE---TTEEEEEETTTCCEEEECTTSBEEEE
T ss_pred --------CCCCceeEEEEeec---CcEEEEEeccCCeEEEECCCCcCcCC
Confidence 11111112222222 122233 2223347899999999963
No 100
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=40.59 E-value=2.4e+02 Score=26.51 Aligned_cols=122 Identities=14% Similarity=0.083 Sum_probs=67.0
Q ss_pred EEecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeC-----CceEEEEecCCeEEEEEC
Q 013365 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGR 150 (444)
Q Consensus 76 i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G-----~~h~~~lt~~G~vy~wG~ 150 (444)
++.+.++.+++|+. |++|.+-..+.-..|.... .......+....+++|+.+..- ..+.+++|++|.+.-.-.
T Consensus 53 ~~~t~d~ll~fT~~-G~~~~~~~~eip~~~r~a~-G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l 130 (370)
T 3l6v_A 53 LVNTHDTLLTFTSS-GKVFWLPVHQLPEAGSNAR-GRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPL 130 (370)
T ss_dssp EECTTCEEEEEETT-SEEEEEEGGGSCBCCTTSC-CEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EecCCCEEEEEeCC-CeEEEEEHHHCcCCCcccC-CcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEH
Confidence 44455667888888 9999886544322222110 0101111222356788887653 347889999999887764
Q ss_pred CCCCccCCCCCCCcccceeeecccCCcEEE--EEeCCCeEEEEeCCCCEEEeeCCCC
Q 013365 151 NQNGQLGLGTTEDSLVPQKLQAFEGVSIKM--VAAGAEHSVAVAEDGELYGWGWGRY 205 (444)
Q Consensus 151 n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--ia~G~~h~~~Lt~~G~vy~wG~n~~ 205 (444)
..+-... ..-..-..+. ++..++. +..+.++.+++|++|++.-+-...-
T Consensus 131 ~e~~~~~----~~G~~ai~L~--~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v 181 (370)
T 3l6v_A 131 SEFAFRL----ARGKIAINLD--EGDALVGVALTDGDRDVLLFASNGKTVRFGESTV 181 (370)
T ss_dssp GGGCSCC----TTCEESSCCC--TTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGS
T ss_pred HHhhccc----CCceEEEEeC--CCCEEEEEEEeCCCceEEEEeCCCeEEEEEcccc
Confidence 4432211 0000001111 1223333 3356788999999999988754443
No 101
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=39.55 E-value=2.2e+02 Score=25.87 Aligned_cols=229 Identities=12% Similarity=0.081 Sum_probs=111.9
Q ss_pred CCEEEEecC-CCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCC--eeEEEEcCCCEEEE
Q 013365 19 RPVLLISAG-ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVYS 95 (444)
Q Consensus 19 ~~i~~ia~G-~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~--~~~~l~~~~g~v~~ 95 (444)
..|..++.. ....+.-..||.|..|=......+ ........--...|..|+...+ +.+.-..+ +.|..
T Consensus 83 ~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~--------~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d-~~i~i 153 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASDSGAVELWELDENETL--------IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD-ICIKV 153 (344)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEEECTTSSC--------EEEEEEEECCSSCEEEEEECTTSSEEEEEETT-SCEEE
T ss_pred CCEEEEEEeCCCeEEEEECCCEEEEEeccCCCce--------eEeeccccCCCCCEEEEEECCCCCEEEEEeCC-CeEEE
Confidence 357777743 344444558899999954322111 0111000001134777766543 33334455 88999
Q ss_pred EeCCCCCccCCCCCCCceeeeeecccC--CCCEEEEEeCCc---eEEEEecCCeEEEEECCCCCccCCCCCCCcccceee
Q 013365 96 WGWGDFGRLGHGNSSDLFTPLPIKALH--SLRVKQIACGDS---HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (444)
Q Consensus 96 wG~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~Ia~G~~---h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v 170 (444)
|-.... ..+..+. ...|..++.... ..+.-..||.|..|-......+ ..+
T Consensus 154 wd~~~~--------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-----------~~~ 208 (344)
T 4gqb_B 154 WDLAQQ--------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA-----------SQI 208 (344)
T ss_dssp EETTTT--------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE-----------EEC
T ss_pred EECCCC--------------cEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccccee-----------eee
Confidence 954321 1122221 236777776432 2344567899999954321100 011
Q ss_pred e-cccCCcEEEEEeC--CCe-EEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecC---ceEE
Q 013365 171 Q-AFEGVSIKMVAAG--AEH-SVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW---RHTI 243 (444)
Q Consensus 171 ~-~~~~~~i~~ia~G--~~h-~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~---~hs~ 243 (444)
. ...+..+..++.. ..+ .+.-..||.|..|-... + ..+..+......|..|+... .+.+
T Consensus 209 ~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~-~-------------~~~~~~~~h~~~v~~v~fsp~g~~~la 274 (344)
T 4gqb_B 209 GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS-T-------------SCVLSSAVHSQCVTGLVFSPHSVPFLA 274 (344)
T ss_dssp C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----------------CCEEEECCSSCEEEEEECSSSSCCEE
T ss_pred ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-C-------------cEEEEEcCCCCCEEEEEEccCCCeEEE
Confidence 1 1122235555543 222 33346788899884321 1 11222222244677776542 3344
Q ss_pred EEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCC-CceeEE--eCCCcEEEeec
Q 013365 244 SVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW-RHTMAV--TSDGKLYGWGW 308 (444)
Q Consensus 244 ~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~-~~~~~l--t~~g~vy~wG~ 308 (444)
.-..||.|+.|-.. .+++ ..+.. ....|..++... ...++. ..||.|..|=.
T Consensus 275 sgs~D~~i~vwd~~-~~~~-----------~~~~~-H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 275 SLSEDCSLAVLDSS-LSEL-----------FRSQA-HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp EEETTSCEEEECTT-CCEE-----------EEECC-CSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred EEeCCCeEEEEECC-CCcE-----------EEEcC-CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 45689999999432 1221 11111 123477776542 223333 46899999954
No 102
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=36.16 E-value=2.8e+02 Score=26.13 Aligned_cols=99 Identities=9% Similarity=0.108 Sum_probs=59.4
Q ss_pred CEEEEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCC
Q 013365 20 PVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWG 99 (444)
Q Consensus 20 ~i~~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n 99 (444)
.|.+|+. ....+++..++.|..|=-.+..+ ...+..+. ..+.++.+-....++++.+ |.|+.|--.
T Consensus 89 ~V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~-----------~~~~~~~~-~~v~~i~~~~p~~av~~~d-G~L~v~dl~ 154 (388)
T 1xip_A 89 DVIFVCF-HGDQVLVSTRNALYSLDLEELSE-----------FRTVTSFE-KPVFQLKNVNNTLVILNSV-NDLSALDLR 154 (388)
T ss_dssp TEEEEEE-ETTEEEEEESSEEEEEESSSTTC-----------EEEEEECS-SCEEEEEECSSEEEEEETT-SEEEEEETT
T ss_pred CeeEEEE-CCCEEEEEcCCcEEEEEchhhhc-----------cCccceee-cceeeEEecCCCEEEEECC-CCEEEEEcc
Confidence 3999999 77788888999999996443321 11122222 2355666655556667777 999999643
Q ss_pred CCCccCCCCCCCceeeeeecccCCCCEEEEEeCCceEEEEecCCeEEEE
Q 013365 100 DFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSW 148 (444)
Q Consensus 100 ~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~~lt~~G~vy~w 148 (444)
.... . .+. ..|..|+....-.++...||++..|
T Consensus 155 ~~~~----------~--~~~----~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 155 TKST----------K--QLA----QNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp TCCE----------E--EEE----ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCcc----------c--ccc----CCceEEEEcCCceEEEEcCCcEEEE
Confidence 2211 1 111 1566666655555556666766665
No 103
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=35.82 E-value=2.4e+02 Score=25.21 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=12.3
Q ss_pred ceEEEEecCCeEEEEEC
Q 013365 134 SHCLAVTVEGEVQSWGR 150 (444)
Q Consensus 134 ~h~~~lt~~G~vy~wG~ 150 (444)
-+.++++.+|++|....
T Consensus 93 p~gia~d~~g~l~v~d~ 109 (329)
T 3fvz_A 93 PHGLSIDTDGNYWVTDV 109 (329)
T ss_dssp EEEEEECTTSCEEEEET
T ss_pred ceEEEECCCCCEEEEEC
Confidence 45677888888887654
No 104
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=32.38 E-value=2.6e+02 Score=24.57 Aligned_cols=158 Identities=11% Similarity=0.053 Sum_probs=83.5
Q ss_pred eeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEE--EeCCceEEEEecCCeEEEEECCCCCccCCC
Q 013365 82 HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLG 159 (444)
Q Consensus 82 ~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I--a~G~~h~~~lt~~G~vy~wG~n~~gqlG~~ 159 (444)
..++++.+ |.|-.-....++ ...+..-.+..+..+ +...++.+++|+.|++|.+-....-. .
T Consensus 4 v~v~lT~~-G~iKr~~~~~~~------------~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~---~ 67 (256)
T 1zvt_A 4 VTIVLSQM-GWVRSAKGHDID------------APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS---A 67 (256)
T ss_dssp EEEEEETT-SEEEEEESSCCC------------STTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCC---S
T ss_pred EEEEEeCC-CEEEEeeCCcCC------------ceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCC---c
Confidence 35667777 887655433221 111122234455554 34567789999999999987544211 1
Q ss_pred CCCCcccceeeecccCCcEEEEEeC--CCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEE-E
Q 013365 160 TTEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMV-A 236 (444)
Q Consensus 160 ~~~~~~~p~~v~~~~~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~I-a 236 (444)
...-......+...++..|+.+... ..+.+++|++|.+.-.-...+-... ..-..+..+. .+..++.+ .
T Consensus 68 r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~-------r~G~~~i~L~-~~d~lv~~~~ 139 (256)
T 1zvt_A 68 RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARN-------RAGKALITLP-ENAHVMPPVV 139 (256)
T ss_dssp SSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCS-------TTCEECBCCC-TTCCBCCCEE
T ss_pred CCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccC-------cCceEEEEEC-CCCEEEEEEE
Confidence 1111111112333346678887663 4457889999988766543331100 0000111111 12233322 2
Q ss_pred --ecCceEEEEeCCCCEEEEeCCCCCccc
Q 013365 237 --CGWRHTISVSSSGRLYSYGWSKYGQLG 263 (444)
Q Consensus 237 --~G~~hs~~lt~~G~vy~~G~n~~gqLG 263 (444)
.+..+.++++++|.+.-+--+..-.+|
T Consensus 140 ~~~~~~~i~l~T~~G~~lrf~~~ei~~~g 168 (256)
T 1zvt_A 140 IEDASDMLLAITQAGRMLMFPVSDLPQLS 168 (256)
T ss_dssp CCCTTCEEEEEETTSEEEEEEGGGSCBCS
T ss_pred ecCCCCEEEEEcCCCeEEEEEHHHCCCcC
Confidence 256788899999998887765544444
No 105
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=32.09 E-value=2.4e+02 Score=24.14 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=12.3
Q ss_pred ceEEEEeCCCCEEEEeC
Q 013365 240 RHTISVSSSGRLYSYGW 256 (444)
Q Consensus 240 ~hs~~lt~~G~vy~~G~ 256 (444)
-+.++++.+|++|....
T Consensus 106 ~~~i~~~~~g~l~v~~~ 122 (300)
T 2qc5_A 106 PYGITEGLNGDIWFTQL 122 (300)
T ss_dssp EEEEEECSTTCEEEEET
T ss_pred CccceECCCCCEEEEcc
Confidence 35677778888887654
No 106
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=29.40 E-value=3.3e+02 Score=24.85 Aligned_cols=223 Identities=10% Similarity=-0.026 Sum_probs=112.0
Q ss_pred EecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCC--eeeccCCCCcEEEEEecC-----CeeEEEEcCCCEEEEE
Q 013365 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP--TQLSALDGHEIVSVTCGA-----DHTTAYSESCMQVYSW 96 (444)
Q Consensus 24 ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P--~~v~~~~~~~i~~i~~G~-----~~~~~l~~~~g~v~~w 96 (444)
++....+.+++++.|++|..-...--..+. ...-.| ..++..++..|+.+..-. .+.+++|++ |.+.-.
T Consensus 46 ~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r---~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~-G~iKrt 121 (323)
T 1wp5_A 46 EMNTKDVLLLFTNKGNYLYCPVHELPDIRW---KDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRN-GMVKKT 121 (323)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCT---TSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETT-SEEEEE
T ss_pred EECCCCEEEEEECCCEEEEEEHHHCcCCCC---CCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCC-CeEEEe
Confidence 456778889999999999775432211111 011111 112222445677654432 357778887 988877
Q ss_pred eCCCCCccCCCCCCCceeeeeecccCCCCEEEE--EeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeeccc
Q 013365 97 GWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFE 174 (444)
Q Consensus 97 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I--a~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~ 174 (444)
-..++-.... . .--..+....+..++.+ ..+.++.+++|++|+++-+-.+.--.+|...... ..+..-+
T Consensus 122 ~l~e~~~~~r--~---~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV----~~i~L~~ 192 (323)
T 1wp5_A 122 ELKHYKAQRY--S---KPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGV----KGMNLKE 192 (323)
T ss_dssp EGGGGCCSCC--S---SCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCE----ECCCCCT
T ss_pred EHHHhhhccc--c---CceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCE----EEEEeCC
Confidence 6544322110 0 00111122233455443 3367789999999999999876544444322111 1111123
Q ss_pred CCcEEEEEe--CCC-eEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEE--EEecCceEEEEeCCC
Q 013365 175 GVSIKMVAA--GAE-HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVM--VACGWRHTISVSSSG 249 (444)
Q Consensus 175 ~~~i~~ia~--G~~-h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~--Ia~G~~hs~~lt~~G 249 (444)
+..|+.+.. ... ..+++|++|...-.-...+-.-+.+... ...+. .+...+..++. +..+....++++++|
T Consensus 193 ~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kG-v~~~~---~~~~~~~~l~~~~~v~~~~~i~~it~~g 268 (323)
T 1wp5_A 193 GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRG-VVILR---ELKANPHRISGFVVAQDSDTIYLQTEKS 268 (323)
T ss_dssp TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCC-EECSC---CCSSSCCCEEEEEEECTTCEEEEEETTS
T ss_pred CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCC-EECee---ecCCCCceEEEEEEeCCCCeEEEEeCCC
Confidence 445665532 123 6777888887554433332111111110 00111 11111223432 233567788999999
Q ss_pred CEEEEeCCCCCccc
Q 013365 250 RLYSYGWSKYGQLG 263 (444)
Q Consensus 250 ~vy~~G~n~~gqLG 263 (444)
.+.-+--+.....|
T Consensus 269 ~~ir~~~~~i~~~~ 282 (323)
T 1wp5_A 269 FIETIKVGDIRFSD 282 (323)
T ss_dssp CEEEEEGGGSCBCC
T ss_pred eEEEEEhhhcCccC
Confidence 98877555444443
No 107
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=29.32 E-value=2.9e+02 Score=24.21 Aligned_cols=123 Identities=9% Similarity=-0.011 Sum_probs=68.2
Q ss_pred EEecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeC--CceEEEEecCCeEEEEECCCC
Q 013365 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQN 153 (444)
Q Consensus 76 i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~lt~~G~vy~wG~n~~ 153 (444)
++...++.+++|+. |++|..-..+. .............+....++.|+.+... ..+.+++|++|.+.-.-...+
T Consensus 40 ~~~t~~~ll~~T~~-Gr~~~~~~~el---p~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~ 115 (256)
T 1zvt_A 40 KGKSNQPVVFVDST-GRSYAIDPITL---PSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 115 (256)
T ss_dssp EEETTSCEEEEETT-SEEEEECGGGS---CCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGG
T ss_pred EeCCCCEEEEEeCC-CeEEEEEHHHC---CCcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHh
Confidence 34556778888888 99999875443 1111111111112333356788888763 455788999998887765443
Q ss_pred CccCCCCCCCcccceeeecc-cCCcEEEE--E-eCCCeEEEEeCCCCEEEeeCCCCCCcC
Q 013365 154 GQLGLGTTEDSLVPQKLQAF-EGVSIKMV--A-AGAEHSVAVAEDGELYGWGWGRYGNLG 209 (444)
Q Consensus 154 gqlG~~~~~~~~~p~~v~~~-~~~~i~~i--a-~G~~h~~~Lt~~G~vy~wG~n~~gqlG 209 (444)
-....+ -..+..+ ++..++.+ . .+.++.+++|++|++.-+-.+..-.+|
T Consensus 116 ~~~~r~-------G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~g 168 (256)
T 1zvt_A 116 VARNRA-------GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 168 (256)
T ss_dssp CCCSTT-------CEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCS
T ss_pred cccCcC-------ceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcC
Confidence 111100 0011111 12223222 2 367789999999999888765543333
No 108
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=29.11 E-value=2.7e+02 Score=23.78 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=12.0
Q ss_pred ceEEEEeCCCCEEEEeC
Q 013365 240 RHTISVSSSGRLYSYGW 256 (444)
Q Consensus 240 ~hs~~lt~~G~vy~~G~ 256 (444)
-+.++++.+|++|....
T Consensus 143 ~~~i~~~~~g~l~v~~~ 159 (299)
T 2z2n_A 143 PSFITLGSDNALWFTEN 159 (299)
T ss_dssp EEEEEECTTSCEEEEET
T ss_pred CceEEEcCCCCEEEEeC
Confidence 35677778888887653
No 109
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=28.38 E-value=4e+02 Score=25.44 Aligned_cols=76 Identities=12% Similarity=-0.001 Sum_probs=39.7
Q ss_pred CcEEEEEecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeC---------CceEEEEec
Q 013365 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---------DSHCLAVTV 141 (444)
Q Consensus 71 ~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G---------~~h~~~lt~ 141 (444)
+.+..|..|....++++.|...||+.-.. ..+...+... ..-..+..-....+..|..+ .-|.++++.
T Consensus 110 ~vv~~I~vG~~Pgia~SpDgk~lyVan~~-~~~~~~G~~~--~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp 186 (426)
T 3c75_H 110 RILGMTDGGFLPHPVAAEDGSFFAQASTV-FERIARGKRT--DYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP 186 (426)
T ss_dssp EEEEEEEECSSCEEEECTTSSCEEEEEEE-EEETTEEEEE--EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT
T ss_pred EEEEEEECCCCCceEECCCCCEEEEEecc-ccccccCCCC--CEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC
Confidence 34666777877778888874467765310 0000000000 01122333333345566654 356789998
Q ss_pred CC-eEEEEE
Q 013365 142 EG-EVQSWG 149 (444)
Q Consensus 142 ~G-~vy~wG 149 (444)
|| .+|..-
T Consensus 187 DGk~lyV~n 195 (426)
T 3c75_H 187 DNKNLLFYQ 195 (426)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEe
Confidence 88 577764
No 110
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=26.55 E-value=5e+02 Score=26.77 Aligned_cols=123 Identities=8% Similarity=-0.015 Sum_probs=66.4
Q ss_pred EEecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeC--CceEEEEecCCeEEEEECCCC
Q 013365 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQN 153 (444)
Q Consensus 76 i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~lt~~G~vy~wG~n~~ 153 (444)
.+...++.+++++. |++|..-....-. +..........+..-.+++|+.+... ..+.++.|++|.+.-.--..+
T Consensus 510 ~~~t~d~ll~ft~~-Gr~y~~~~~~lP~---~~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~ 585 (716)
T 1zvu_A 510 KGKSNQPVVFVDST-GRSYAIDPITLPS---ARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 585 (716)
T ss_dssp CCCSSSCEEEEETT-SEEEEECTTTSCC---CC---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGG
T ss_pred EecCCCEEEEEecC-CcEEEEEeeeccc---ccccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHh
Confidence 34445677888888 9999876433211 11111111111222356788888765 456788899999887754332
Q ss_pred CccCCCCCCCcccceeeecccCCcEEE---EEeCCCeEEEEeCCCCEEEeeCCCCCCc
Q 013365 154 GQLGLGTTEDSLVPQKLQAFEGVSIKM---VAAGAEHSVAVAEDGELYGWGWGRYGNL 208 (444)
Q Consensus 154 gqlG~~~~~~~~~p~~v~~~~~~~i~~---ia~G~~h~~~Lt~~G~vy~wG~n~~gql 208 (444)
-.. . ... -..+..-++..++. +..+..+.+++|++|++..+-.+..-.+
T Consensus 586 ~~~---~-~~g--~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~ 637 (716)
T 1zvu_A 586 VAR---N-RAG--KALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL 637 (716)
T ss_dssp CCC---S-TTC--EECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBC
T ss_pred ccc---C-ccc--eEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCcc
Confidence 100 0 000 01111111222222 2246789999999999998876654333
No 111
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=26.06 E-value=3.3e+02 Score=23.74 Aligned_cols=236 Identities=11% Similarity=0.052 Sum_probs=0.0
Q ss_pred EEEecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCCeeEEEEcCCCEEEEEeCCCC
Q 013365 22 LLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDF 101 (444)
Q Consensus 22 ~~ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~~~~~l~~~~g~v~~wG~n~~ 101 (444)
+.++.-....+.-..|+.|+.|-.... .........................+.-..+ +.+..|
T Consensus 92 ~~~s~dg~~l~s~~~d~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-~~~~~~----- 155 (340)
T 4aow_A 92 VVISSDGQFALSGSWDGTLRLWDLTTG----------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD-KTIKLW----- 155 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEECTTSSCEEEEETT-SCEEEE-----
T ss_pred EEECCCCCEEEEEcccccceEEeeccc----------ceeeeecCCCCceeEEEEeecCccceeecCC-CeEEEE-----
Q ss_pred CccCCCCCCCceeeeeecccCCCCEEEEEeCCc----eEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCc
Q 013365 102 GRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS----HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVS 177 (444)
Q Consensus 102 gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~----h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~ 177 (444)
+......+..........+..++.... ..+.-..++.|+.|-. ....+..........
T Consensus 156 ------d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~------------~~~~~~~~~~~h~~~ 217 (340)
T 4aow_A 156 ------NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL------------ANCKLKTNHIGHTGY 217 (340)
T ss_dssp ------CTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET------------TTTEEEEEECCCSSC
T ss_pred ------EeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEEC------------CCCceeeEecCCCCc
Q ss_pred EEEEEeCCCeEEEEe--CCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEe
Q 013365 178 IKMVAAGAEHSVAVA--EDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYG 255 (444)
Q Consensus 178 i~~ia~G~~h~~~Lt--~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~vy~~G 255 (444)
|..|+...+..++++ .||.|..| +......+..+.....-..-...-..+.++...++.|+.|
T Consensus 218 v~~~~~s~~~~~l~s~s~Dg~i~iw--------------d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iw- 282 (340)
T 4aow_A 218 LNTVTVSPDGSLCASGGKDGQAMLW--------------DLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIW- 282 (340)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEE--------------ETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEE-
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEE--------------EeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEE-
Q ss_pred CCCCCcccCCCCCCceeeeeeccccCCcEEEEecCCCceeEEeCCCcEEEe
Q 013365 256 WSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGW 306 (444)
Q Consensus 256 ~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~w 306 (444)
+-..+++-....................-..++.-....+.-..||.|+.|
T Consensus 283 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 283 DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333 (340)
T ss_dssp ETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
No 112
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=25.37 E-value=5.7e+02 Score=26.31 Aligned_cols=123 Identities=10% Similarity=0.084 Sum_probs=66.5
Q ss_pred EeCCceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeC--CCeEEEEeCCCCEEEeeCCCCCC
Q 013365 130 ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGN 207 (444)
Q Consensus 130 a~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~n~~gq 207 (444)
+...++.+++|+.|++|..-...--. +...-......+..-++++|+.+... ..+.++.|++|.+.-.-...+-.
T Consensus 511 ~~t~d~ll~ft~~Gr~y~~~~~~lP~---~~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~ 587 (716)
T 1zvu_A 511 GKSNQPVVFVDSTGRSYAIDPITLPS---ARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVA 587 (716)
T ss_dssp CCSSSCEEEEETTSEEEEECTTTSCC---CC---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCC
T ss_pred ecCCCEEEEEecCCcEEEEEeeeccc---ccccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcc
Confidence 33456688999999999886543221 11111112222333356788887665 45578889999888654332210
Q ss_pred cCCCCCCCccceeeeeeeecCCCeEEEE---EecCceEEEEeCCCCEEEEeCCCCCccc
Q 013365 208 LGLGDRNDRLIPEKVATVDLQREKMVMV---ACGWRHTISVSSSGRLYSYGWSKYGQLG 263 (444)
Q Consensus 208 lG~~~~~~~~~p~~v~~~~~~~~~i~~I---a~G~~hs~~lt~~G~vy~~G~n~~gqLG 263 (444)
. ...-.....+.. +..++.+ ..+..+.++++++|++..|-.+.--.+|
T Consensus 588 ~-------~~~g~~ai~L~~-~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~g 638 (716)
T 1zvu_A 588 R-------NRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 638 (716)
T ss_dssp C-------STTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCS
T ss_pred c-------CccceEEEeeCC-CCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccC
Confidence 0 000111111111 2223222 2367788999999999888766544443
No 113
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=24.93 E-value=4.4e+02 Score=24.79 Aligned_cols=131 Identities=13% Similarity=0.115 Sum_probs=57.9
Q ss_pred EEEEEecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeC---------CceEEEEecCC
Q 013365 73 IVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---------DSHCLAVTVEG 143 (444)
Q Consensus 73 i~~i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G---------~~h~~~lt~~G 143 (444)
+..|..|..-.++++.+...||+...- ..+.-.+.. ...-..+..-....+..|..+ .-+.++++.||
T Consensus 72 ~~~I~vG~~P~va~spDG~~lyVan~~-~~r~~~G~~--~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG 148 (386)
T 3sjl_D 72 IGMIDGGFLPNPVVADDGSFIAHASTV-FSRIARGER--TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG 148 (386)
T ss_dssp EEEEEECSSCEEEECTTSSCEEEEEEE-EEETTEEEE--EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred EEEEECCCCCcEEECCCCCEEEEEccc-ccccccCCC--CCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC
Confidence 445566655557777773457765310 000000000 001122222233345556554 35678999888
Q ss_pred e-EEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeCCCeEEEEeCCCCEEEeeCCCCCCc
Q 013365 144 E-VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNL 208 (444)
Q Consensus 144 ~-vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h~~~Lt~~G~vy~wG~n~~gql 208 (444)
+ +|.......+.+..-+......-..+. +.+. ..-...|..-.++++.||++........+.+
T Consensus 149 k~lyVan~~~~~~VsVID~~t~~vv~tI~-v~g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 149 KTLLFYQFSPAPAVGVVDLEGKAFKRMLD-VPDC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp SEEEEEECSSSCEEEEEETTTTEEEEEEE-CCSE-EEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred CEEEEEEcCCCCeEEEEECCCCcEEEEEE-CCCc-ceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence 6 677643212222111111111111111 1110 1111235555668889999888775544443
No 114
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=23.40 E-value=4.1e+02 Score=23.91 Aligned_cols=215 Identities=13% Similarity=0.146 Sum_probs=106.7
Q ss_pred EEecCCeeEEEEcCCCEEEEEeCCCCCccCCCCCCCceee--eeecccCCCCEEEEEe-----CCceEEEEecCCeEEEE
Q 013365 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTP--LPIKALHSLRVKQIAC-----GDSHCLAVTVEGEVQSW 148 (444)
Q Consensus 76 i~~G~~~~~~l~~~~g~v~~wG~n~~gqlG~~~~~~~~~p--~~v~~~~~~~i~~Ia~-----G~~h~~~lt~~G~vy~w 148 (444)
++...++.+++|+. |++|.+-..+.-..+.. ..-.| ..+....+++|+.+.. ...+.+++|++|.+.-.
T Consensus 49 ~~~~~~~ll~fT~~-G~~~~~~~~elp~~~~~---a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt 124 (307)
T 1zi0_A 49 VANTHDHILCFSSR-GRVYSMKVYQLPEATRG---ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 124 (307)
T ss_dssp EEETTCEEEEEETT-SEEEEEEGGGSCCCCSS---SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEE
T ss_pred EECCCCEEEEEECC-CEEEEEEhhHCcCCCCC---CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEE
Confidence 55567788888888 99999876543332221 11122 1222335667887754 23457888999988877
Q ss_pred ECCCCCccCCCCCCCcccceeeecccCCcEEEE--EeCCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeee
Q 013365 149 GRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV--AAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVD 226 (444)
Q Consensus 149 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i--a~G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~ 226 (444)
-...+-.... .-. ..+...++..++.+ ..+.++.+++|++|+++-+-....-.+|..... .+...+.
T Consensus 125 ~l~e~~~~~r----~G~--~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~G-----v~~i~L~ 193 (307)
T 1zi0_A 125 VLTEFNRLRT----AGK--VAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG-----VRGIRLG 193 (307)
T ss_dssp EGGGGTTCCT----TCE--ESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCC-----EECCCCC
T ss_pred EHHHhhcccc----CCe--EEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCC-----eEeEEeC
Confidence 5433211110 000 01111122334432 346778999999999998865544333321111 1111111
Q ss_pred cCCCeEEEEEec--CceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEe--cCCCceeEEeCCCc
Q 013365 227 LQREKMVMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQIS--GGWRHTMAVTSDGK 302 (444)
Q Consensus 227 ~~~~~i~~Ia~G--~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~--~G~~~~~~lt~~g~ 302 (444)
.++.|+.+..- ..+.+.++++|.+--.--..|-.-+.+.. -...+ ++.. .+..+..+. ......+++|++|.
T Consensus 194 -~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k-G~~~~-~~~~-~~~~lv~~~~v~~~~~l~~~t~~g~ 269 (307)
T 1zi0_A 194 -EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK-GVISI-KVTE-RNGLVVGAVQVDDCDQIMMITDAGT 269 (307)
T ss_dssp -TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSC-CEESS-CCCT-TTCSEEEEEEECTTCEEEEEESSCC
T ss_pred -CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCC-CEEee-EecC-CCCeEEEEEEeCCCceEEEEcCCCc
Confidence 24566666432 23466777777654443222221111110 00011 1111 112233322 24566788889998
Q ss_pred EEEeecC
Q 013365 303 LYGWGWN 309 (444)
Q Consensus 303 vy~wG~n 309 (444)
+.-+-.+
T Consensus 270 ~ir~~~~ 276 (307)
T 1zi0_A 270 LVRTRVS 276 (307)
T ss_dssp EEEEEGG
T ss_pred EEEEecc
Confidence 8765443
No 115
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=23.30 E-value=4.2e+02 Score=24.04 Aligned_cols=226 Identities=10% Similarity=-0.014 Sum_probs=107.5
Q ss_pred CCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCC--eeEEEEcCCCEEEEEeCCCCCccC
Q 013365 28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLG 105 (444)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~--~~~~l~~~~g~v~~wG~n~~gqlG 105 (444)
....+.-..||.|..|-.... .+..........|..++...+ +.+.-..+ +.|+.|-......
T Consensus 109 ~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-~~i~iwd~~~~~~-- 173 (420)
T 3vl1_A 109 MRRFILGTTEGDIKVLDSNFN------------LQREIDQAHVSEITKLKFFPSGEALISSSQD-MQLKIWSVKDGSN-- 173 (420)
T ss_dssp SCEEEEEETTSCEEEECTTSC------------EEEEETTSSSSCEEEEEECTTSSEEEEEETT-SEEEEEETTTCCC--
T ss_pred CCEEEEEECCCCEEEEeCCCc------------ceeeecccccCccEEEEECCCCCEEEEEeCC-CeEEEEeCCCCcC--
Confidence 344445557888888843211 111111112245777776533 44444556 9999996543211
Q ss_pred CCCCCCceeeeeecccCCCCEEEEEeC--CceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEe
Q 013365 106 HGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAA 183 (444)
Q Consensus 106 ~~~~~~~~~p~~v~~~~~~~i~~Ia~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~ 183 (444)
...+.. ....|..++.. ....+.-..||.|..|-......+..-... ......|..++.
T Consensus 174 ---------~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~---------~~~~~~v~~~~~ 234 (420)
T 3vl1_A 174 ---------PRTLIG-HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK---------ENPHDGVNSIAL 234 (420)
T ss_dssp ---------CEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBT---------TBTTCCEEEEEE
T ss_pred ---------ceEEcC-CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecC---------CCCCCCccEEEE
Confidence 111211 12356666654 344556677899999964332111000000 000111222211
Q ss_pred -----------------------CCCeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCc
Q 013365 184 -----------------------GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR 240 (444)
Q Consensus 184 -----------------------G~~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~ 240 (444)
...+.++-+.+|.|+.|-..... .+..+ .......|..++....
T Consensus 235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~--~~~~~~~v~~~~~~~~ 301 (420)
T 3vl1_A 235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE-----------QTIQL--PSKFTCSCNSLTVDGN 301 (420)
T ss_dssp EECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC-----------EEEEE--CCTTSSCEEEEEECSS
T ss_pred ecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc-----------eeEEc--ccccCCCceeEEEeCC
Confidence 12344555678888888532211 11111 1111235666665443
Q ss_pred ---eEEEEeCCCCEEEEeCCCCCcccCCCCCCceeeeeeccccCCcEEEEecCCCceeE-EeCCCcEEEeecCC
Q 013365 241 ---HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMA-VTSDGKLYGWGWNK 310 (444)
Q Consensus 241 ---hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~-lt~~g~vy~wG~n~ 310 (444)
+.+.-..+|.|+.|-.....+ ....+.......|..+.......++ -..||.|..|-...
T Consensus 302 ~~~~l~~g~~dg~i~vwd~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 302 NANYIYAGYENGMLAQWDLRSPEC----------PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp CTTEEEEEETTSEEEEEETTCTTS----------CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred CCCEEEEEeCCCeEEEEEcCCCcC----------chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 566667889999996433211 0111221123345555544443333 34688899997544
No 116
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.99 E-value=4.9e+02 Score=24.28 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=9.2
Q ss_pred eEEEEeCCCCEEEEe
Q 013365 241 HTISVSSSGRLYSYG 255 (444)
Q Consensus 241 hs~~lt~~G~vy~~G 255 (444)
..++++.+|++|..-
T Consensus 326 ~gia~d~dG~lyvad 340 (409)
T 3hrp_A 326 NGMTVDEDGNFYIVD 340 (409)
T ss_dssp EEEEECTTCCEEEEE
T ss_pred eEEEEeCCCCEEEEe
Confidence 456666666666653
No 117
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=21.92 E-value=4e+02 Score=23.26 Aligned_cols=10 Identities=10% Similarity=-0.280 Sum_probs=6.6
Q ss_pred EcCCeEEEEe
Q 013365 35 LSGNIVCSWG 44 (444)
Q Consensus 35 ~~~g~v~~wG 44 (444)
..++.|++|=
T Consensus 18 ~~~~~v~~~d 27 (349)
T 1jmx_B 18 NYPNNLHVVD 27 (349)
T ss_dssp ETTTEEEEEE
T ss_pred CCCCeEEEEE
Confidence 4567777774
No 118
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=21.86 E-value=4.9e+02 Score=24.25 Aligned_cols=127 Identities=12% Similarity=0.061 Sum_probs=67.6
Q ss_pred EecCCCceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEec-----CCeeEEEEcCCCEEEEEeC
Q 013365 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG-----ADHTTAYSESCMQVYSWGW 98 (444)
Q Consensus 24 ia~G~~~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G-----~~~~~~l~~~~g~v~~wG~ 98 (444)
++.+..+.+++++.|++|-+--..--..+... .-...-..++.-++.+|+.+..- ..+.+++|++ |.+.-.-.
T Consensus 53 ~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a-~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~-G~vKrt~l 130 (370)
T 3l6v_A 53 LVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNA-RGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRN-GTVKKTPL 130 (370)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBCCTTS-CCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETT-SEEEEEEG
T ss_pred EecCCCEEEEEeCCCeEEEEEHHHCcCCCccc-CCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCC-CeEEEeEH
Confidence 34456668889999999976433211111100 00011111222345678877653 3367788888 98887765
Q ss_pred CCCCccCCCCCCCceeeeeecccCCCCEEEE--EeCCceEEEEecCCeEEEEECCCCCccCC
Q 013365 99 GDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGL 158 (444)
Q Consensus 99 n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~I--a~G~~h~~~lt~~G~vy~wG~n~~gqlG~ 158 (444)
.++-... .. --..+..-.+..++.+ ..+..+.+++|++|++.-+-.+.--.+|.
T Consensus 131 ~e~~~~~---~~---G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR 186 (370)
T 3l6v_A 131 SEFAFRL---AR---GKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR 186 (370)
T ss_dssp GGGCSCC---TT---CEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred HHhhccc---CC---ceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCC
Confidence 4442211 00 0011111123344443 34667899999999999886554444443
No 119
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=21.71 E-value=4.1e+02 Score=23.29 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=12.3
Q ss_pred ceEEEEeCCCCEEEEeCC
Q 013365 240 RHTISVSSSGRLYSYGWS 257 (444)
Q Consensus 240 ~hs~~lt~~G~vy~~G~n 257 (444)
-+.++++.+|++|+....
T Consensus 89 ~~~i~~~~dg~l~v~~~~ 106 (333)
T 2dg1_A 89 PAAIKIHKDGRLFVCYLG 106 (333)
T ss_dssp EEEEEECTTSCEEEEECT
T ss_pred cceEEECCCCcEEEEeCC
Confidence 356677778888876643
No 120
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=21.42 E-value=5.1e+02 Score=24.30 Aligned_cols=168 Identities=11% Similarity=0.067 Sum_probs=74.2
Q ss_pred EEEEEeCCceEEEEecCCe-EEEEECCCCCccCCCCCCCcccceeeecccCCcEEEEEeC---------CCeEEEEeCCC
Q 013365 126 VKQIACGDSHCLAVTVEGE-VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG---------AEHSVAVAEDG 195 (444)
Q Consensus 126 i~~Ia~G~~h~~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G---------~~h~~~Lt~~G 195 (444)
+..|..|...-++++.||+ +|....-. .+.-.+. ....-..+..-....+..|..+ .-+.++++.||
T Consensus 72 ~~~I~vG~~P~va~spDG~~lyVan~~~-~r~~~G~--~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG 148 (386)
T 3sjl_D 72 IGMIDGGFLPNPVVADDGSFIAHASTVF-SRIARGE--RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG 148 (386)
T ss_dssp EEEEEECSSCEEEECTTSSCEEEEEEEE-EETTEEE--EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred EEEEECCCCCcEEECCCCCEEEEEcccc-cccccCC--CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC
Confidence 4445555443488998886 67653100 0000000 0001112222223345556554 35678999998
Q ss_pred C-EEEeeCCCCCCcCCCCCCCccceeeeeeeecCCCeEEEEEecCceEEEEeCCCCEEEEeCCCCCcccCCCCCCceeee
Q 013365 196 E-LYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPC 274 (444)
Q Consensus 196 ~-vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~Ia~G~~hs~~lt~~G~vy~~G~n~~gqLG~~~~~~~~~p~ 274 (444)
+ +|+......+.+..-+.... +.+..+...+ ...-...|..-.++++.+|++........+.+-. .. .
T Consensus 149 k~lyVan~~~~~~VsVID~~t~---~vv~tI~v~g-~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-----~~-~- 217 (386)
T 3sjl_D 149 KTLLFYQFSPAPAVGVVDLEGK---AFKRMLDVPD-CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-----TH-T- 217 (386)
T ss_dssp SEEEEEECSSSCEEEEEETTTT---EEEEEEECCS-EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE-----EE-C-
T ss_pred CEEEEEEcCCCCeEEEEECCCC---cEEEEEECCC-cceeecCCCceeEEECCCCCEEEEECCCCCeEEE-----ee-c-
Confidence 7 77764221222211111111 1111111111 1111233555566888999988877654444310 00 0
Q ss_pred eeccccCCcEE---EEecCCCceeEEeCCCcEEEee
Q 013365 275 QLEALRESFIS---QISGGWRHTMAVTSDGKLYGWG 307 (444)
Q Consensus 275 ~v~~~~~~~i~---~i~~G~~~~~~lt~~g~vy~wG 307 (444)
++.......+. .......+.++++.+|+||+.-
T Consensus 218 ~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d 253 (386)
T 3sjl_D 218 EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID 253 (386)
T ss_dssp CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEE
T ss_pred ceeccccccccccceeEcCCCcEEEEeCCCEEEEEE
Confidence 11111111110 1222233566788888898874
No 121
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=21.05 E-value=3.7e+02 Score=22.55 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=11.1
Q ss_pred eEEEEeCCCCEEEEeC
Q 013365 241 HTISVSSSGRLYSYGW 256 (444)
Q Consensus 241 hs~~lt~~G~vy~~G~ 256 (444)
..++++.+|.+|+-..
T Consensus 195 ~~i~~d~~g~l~v~~~ 210 (270)
T 1rwi_B 195 WGIAVDEAGTVYVTEH 210 (270)
T ss_dssp EEEEECTTCCEEEEET
T ss_pred eEEEECCCCCEEEEEC
Confidence 4567777788877654
No 122
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=20.91 E-value=8.1e+02 Score=26.45 Aligned_cols=147 Identities=14% Similarity=0.115 Sum_probs=73.3
Q ss_pred CCEEEEecCCC--ceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCC--eeEEEEcCCCEEE
Q 013365 19 RPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVY 94 (444)
Q Consensus 19 ~~i~~ia~G~~--~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~--~~~~l~~~~g~v~ 94 (444)
..|..++...+ ..+.-..||.|..|-...... ...+.. ....|..++...+ +.+....+ |.|.
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-----------~~~~~~-h~~~v~~~~~s~~~~~l~s~~~d-~~v~ 682 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-----------LLDIKA-HEDEVLCCAFSSDDSYIATCSAD-KKVK 682 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------EEEECC-CSSCEEEEEECTTSSEEEEEETT-SEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-----------EEEecc-CCCCEEEEEEecCCCEEEEEeCC-CeEE
Confidence 45655554433 333334778888886433211 111111 1235666666443 44444556 9999
Q ss_pred EEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCC--ce--EEEEecCCeEEEEECCCCCccCCCCCCCcccceee
Q 013365 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SH--CLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (444)
Q Consensus 95 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~--~h--~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v 170 (444)
.|-...... ...+. .....|..++... .. .+.-+.||.|+.|-...... ...+
T Consensus 683 vwd~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-----------~~~~ 739 (1249)
T 3sfz_A 683 IWDSATGKL-----------VHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-----------RNTM 739 (1249)
T ss_dssp EEETTTCCE-----------EEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-----------EEEE
T ss_pred EEECCCCce-----------EEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-----------hhee
Confidence 996542110 11111 1233577776644 32 33446789999996533110 0111
Q ss_pred ecccCCcEEEEEeC--CCeEEEEeCCCCEEEeeC
Q 013365 171 QAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGW 202 (444)
Q Consensus 171 ~~~~~~~i~~ia~G--~~h~~~Lt~~G~vy~wG~ 202 (444)
.. ....|..++.. ....+..+.||.|..|-.
T Consensus 740 ~~-h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~ 772 (1249)
T 3sfz_A 740 FG-HTNSVNHCRFSPDDELLASCSADGTLRLWDV 772 (1249)
T ss_dssp CC-CSSCEEEEEECSSTTEEEEEESSSEEEEEEG
T ss_pred cC-CCCCEEEEEEecCCCEEEEEECCCeEEEEeC
Confidence 11 11245555443 345556668888988853
No 123
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=20.34 E-value=4.2e+02 Score=22.91 Aligned_cols=187 Identities=13% Similarity=0.130 Sum_probs=90.9
Q ss_pred CCEEEEecCCC--ceEEEEcCCeEEEEeCCCCCCCCCCCCCCCcCCeeeccCCCCcEEEEEecCC--eeEEEEcCCCEEE
Q 013365 19 RPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVY 94 (444)
Q Consensus 19 ~~i~~ia~G~~--~~~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~P~~v~~~~~~~i~~i~~G~~--~~~~l~~~~g~v~ 94 (444)
..|..++...+ ..+.-..||.|..|...... ....+.. ....|..++...+ +.+.-..+ +.|.
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d-~~i~ 90 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------FEKTISG-HKLGISDVAWSSDSNLLVSASDD-KTLK 90 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETT-SEEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----------cchhhcc-CCCceEEEEEcCCCCEEEEECCC-CEEE
Confidence 45666665433 33444578888888653211 1111211 1234666665543 33444456 9999
Q ss_pred EEeCCCCCccCCCCCCCceeeeeecccCCCCEEEEEeCC--ceEEEEecCCeEEEEECCCCCccCCCCCCCcccceeeec
Q 013365 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA 172 (444)
Q Consensus 95 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~Ia~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~ 172 (444)
.|-...... ...+.. ....|..++... ...+.-..||.|+.|-...... ...+.
T Consensus 91 vwd~~~~~~-----------~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------~~~~~- 146 (312)
T 4ery_A 91 IWDVSSGKC-----------LKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-----------LKTLP- 146 (312)
T ss_dssp EEETTTCCE-----------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-----------EEEEC-
T ss_pred EEECCCCcE-----------EEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-----------EEEec-
Confidence 996432210 111111 122455555543 3455556789999996432110 01111
Q ss_pred ccCCcEEEEEeCC--CeEEEEeCCCCEEEeeCCCCCCcCCCCCCCccceeeeeee-ecCCCeEEEEEe--cCceEEEEeC
Q 013365 173 FEGVSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV-DLQREKMVMVAC--GWRHTISVSS 247 (444)
Q Consensus 173 ~~~~~i~~ia~G~--~h~~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~-~~~~~~i~~Ia~--G~~hs~~lt~ 247 (444)
.....|..++... ...+.-..||.|..|-..... .+..+ ......+..++. ...+.++-..
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 212 (312)
T 4ery_A 147 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--------------CLKTLIDDDNPPVSFVKFSPNGKYILAATL 212 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------------EEEEECCSSCCCEEEEEECTTSSEEEEEET
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--------------eeeEEeccCCCceEEEEECCCCCEEEEEcC
Confidence 1122455555433 344555678888888532210 11111 111223443333 2345556677
Q ss_pred CCCEEEEeC
Q 013365 248 SGRLYSYGW 256 (444)
Q Consensus 248 ~G~vy~~G~ 256 (444)
+|.|..|-.
T Consensus 213 d~~i~iwd~ 221 (312)
T 4ery_A 213 DNTLKLWDY 221 (312)
T ss_dssp TTEEEEEET
T ss_pred CCeEEEEEC
Confidence 888888864
Done!