Query 013367
Match_columns 444
No_of_seqs 57 out of 59
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 03:08:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09546 zntB zinc transporter 100.0 4.2E-27 9.1E-32 227.0 21.7 231 178-441 34-268 (324)
2 COG0598 CorA Mg2+ and Co2+ tra 99.9 1.2E-21 2.6E-26 190.3 19.4 234 178-441 29-266 (322)
3 PF01544 CorA: CorA-like Mg2+ 99.8 5.2E-19 1.1E-23 162.4 18.2 232 179-441 2-238 (292)
4 TIGR00383 corA magnesium Mg(2+ 99.7 7.2E-17 1.6E-21 153.8 19.0 234 178-441 24-262 (318)
5 PRK11085 magnesium/nickel/coba 99.2 8.8E-10 1.9E-14 109.3 18.0 233 180-441 25-260 (316)
6 PF01031 Dynamin_M: Dynamin ce 71.7 48 0.001 32.4 10.8 144 288-436 89-254 (295)
7 COG1156 NtpB Archaeal/vacuolar 69.8 15 0.00032 39.8 7.2 131 226-368 285-452 (463)
8 PF10186 Atg14: UV radiation r 42.1 1.5E+02 0.0033 28.1 8.3 75 357-433 76-150 (302)
9 PF11932 DUF3450: Protein of u 37.0 82 0.0018 30.4 5.8 87 326-427 44-142 (251)
10 PF06156 DUF972: Protein of un 35.1 42 0.00092 29.6 3.2 55 326-413 3-57 (107)
11 PF10186 Atg14: UV radiation r 33.4 3.4E+02 0.0074 25.7 9.3 75 356-432 82-156 (302)
12 COG0598 CorA Mg2+ and Co2+ tra 32.0 1.3E+02 0.0029 30.1 6.5 18 230-247 100-117 (322)
13 PF05837 CENP-H: Centromere pr 31.9 1E+02 0.0023 26.7 5.1 73 356-431 15-87 (106)
14 PF11461 RILP: Rab interacting 30.5 1E+02 0.0022 25.1 4.5 32 404-435 5-36 (60)
15 COG4752 Uncharacterized protei 28.6 67 0.0015 31.0 3.6 45 374-418 52-105 (190)
16 PF07106 TBPIP: Tat binding pr 28.2 4.6E+02 0.01 23.8 9.6 61 356-416 77-137 (169)
17 PRK11085 magnesium/nickel/coba 26.5 3.4E+02 0.0074 27.8 8.4 75 360-436 171-248 (316)
18 PF03701 UPF0181: Uncharacteri 26.4 94 0.002 24.8 3.5 29 285-318 14-42 (51)
19 PF07568 HisKA_2: Histidine ki 26.3 86 0.0019 25.4 3.4 37 282-318 37-73 (76)
20 PF14584 DUF4446: Protein of u 26.0 3.9E+02 0.0084 24.9 8.0 49 381-429 32-80 (151)
21 PF01544 CorA: CorA-like Mg2+ 25.1 4.8E+02 0.01 24.4 8.6 41 399-439 189-229 (292)
22 KOG1853 LIS1-interacting prote 24.5 1.1E+02 0.0025 31.6 4.6 74 326-414 47-120 (333)
23 PF09755 DUF2046: Uncharacteri 24.5 1.2E+02 0.0027 31.5 4.9 45 356-409 234-278 (310)
24 PF11074 DUF2779: Domain of un 23.3 2.8E+02 0.0062 25.0 6.4 53 375-427 55-117 (130)
25 TIGR00383 corA magnesium Mg(2+ 22.5 1E+02 0.0022 30.2 3.7 18 230-247 94-111 (318)
26 PRK09546 zntB zinc transporter 22.2 2E+02 0.0043 28.7 5.7 18 230-247 104-121 (324)
27 PF08361 TetR_C_2: MAATS-type 20.8 1.9E+02 0.0042 24.8 4.7 56 378-433 7-62 (121)
28 PRK13169 DNA replication intia 20.7 1E+02 0.0022 27.6 3.0 55 326-413 3-57 (110)
29 PF05103 DivIVA: DivIVA protei 20.7 34 0.00073 29.2 0.1 88 303-413 20-107 (131)
30 PRK11637 AmiB activator; Provi 20.5 4.9E+02 0.011 27.1 8.4 31 356-386 101-131 (428)
31 COG4467 Regulator of replicati 20.5 85 0.0018 28.6 2.5 28 326-366 3-30 (114)
No 1
>PRK09546 zntB zinc transporter; Reviewed
Probab=99.95 E-value=4.2e-27 Score=227.01 Aligned_cols=231 Identities=18% Similarity=0.264 Sum_probs=211.8
Q ss_pred CCCceeEEEecCCCccHHHHhhcCCCccHHHHHhhhcccchhhhhhhhhhhccceeecCceEEEecccCCCCCCCCCCCc
Q 013367 178 PAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDI 257 (444)
Q Consensus 178 ~~gP~Ww~Hlda~hp~v~~WL~~~~~L~pav~~AL~dEstRisP~mk~l~yeR~vRvagGLL~~LRGvN~gnP~~~pEDM 257 (444)
+++++| +|++..+|....||.+...+|+++.++|.+++.| | |..+.++++++.|++++. +++..++++
T Consensus 34 ~~~~~W-i~l~~~~~~e~~~L~~~~~~~~~~~d~l~~~~~r--p--------k~e~~~~~~~iil~~~~~-~~~~~~~~~ 101 (324)
T PRK09546 34 EAHPCW-LHLDYTHPDSAQWLATTPLLPDNVRDALAGESTR--P--------RVSRLGEGTLITLRCING-NTDERPDQL 101 (324)
T ss_pred CCCCEE-EEeCCCChhHHHHHHhcCCCCHHHHHHHhCCCCC--C--------cEEEECCEEEEEEEeccC-CCCCChhhe
Confidence 356787 9999999999999998888999999999998888 9 888899999999999998 777667788
Q ss_pred ceeeeeeecCCeEEEEeeccCCCCccccccHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHH
Q 013367 258 PIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIE 337 (444)
Q Consensus 258 ~VslR~W~~~n~IIS~~h~kg~~~~R~V~aI~eV~e~L~aGg~~gP~s~~e~Ia~La~rLt~~~d~l~~k~L~d~aDelE 337 (444)
+.+++|+.+|+|||++ +.++.+++++++.+..| .+|.++.+++..|.+.+++...++ .+.|++++|+||
T Consensus 102 -~~l~~~l~~~~lITv~-------~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~lld~ivd~~~~~-l~~i~~~ld~lE 170 (324)
T PRK09546 102 -VAMRVYITDRLIVSTR-------HRKVLALDDVVSDLQEG--TGPTDCGGWLVDVCDALTDHASEF-IEELHDKIIDLE 170 (324)
T ss_pred -EEEEEEEeCCEEEEEe-------cCCcccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999999 89999999999999998 789999999999999999999999 999999999999
Q ss_pred HHHhhhccCcchhhHHHhhhHHHHHHhhceeEEeeccchhHHHHHHHHh----hcccchHHHHHHHHHHHHHHHHHHHHH
Q 013367 338 LKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ----HLRGNVARTLLEGIRKNAREMIEEQEA 413 (444)
Q Consensus 338 lk~lnr~~~ed~~l~~~ilr~eI~~LRrQvIrvRRyL~PQREii~eL~~----~L~~~d~r~~L~Ei~~rlrrmlEElDA 413 (444)
++++. +..+ .+++|..||++++++||++.|+++++.+|.. ++..++ +..++++.+++.+.+|++++
T Consensus 171 ~~l~~--~~~~-------~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~~~~~~~-~~~l~Dv~d~~~~~~~~l~~ 240 (324)
T PRK09546 171 DNLLD--QQIP-------PRGELALLRKQLIVMRRYMAPQRDVFARLASERLPWMSDDD-RRRMQDIADRLGRGLDDLDA 240 (324)
T ss_pred HHHhc--CCCc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHH-HHHHHHHHHHHHHHHHHHHH
Confidence 99987 3333 3468999999999999999999999999986 666666 99999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhcccccc
Q 013367 414 VRGRLFTIQDVMQSTVRAWLQVCTKTTE 441 (444)
Q Consensus 414 vR~Rl~~IQDemqS~v~e~LnrrsY~~~ 441 (444)
.|+|+..++|+..+.++++||+.||...
T Consensus 241 ~~~~~~~l~d~~~s~~s~~~N~~m~~Lt 268 (324)
T PRK09546 241 CIARTAVLADEIASVMAEAMNRRTYTMS 268 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887653
No 2
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.2e-21 Score=190.34 Aligned_cols=234 Identities=18% Similarity=0.195 Sum_probs=214.4
Q ss_pred CCCceeEEEecCCCccHHHHhhcCCCccHHHHHhhhcccchhhhhhhhhhhccceeecCceEEEecccCCCCCCCCCCCc
Q 013367 178 PAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDI 257 (444)
Q Consensus 178 ~~gP~Ww~Hlda~hp~v~~WL~~~~~L~pav~~AL~dEstRisP~mk~l~yeR~vRvagGLL~~LRGvN~gnP~~~pEDM 257 (444)
+....+|.|+...++.-..||.+.-.|||..++.+.+.+.| | |....++++.+.+++++. ++..+..+.
T Consensus 29 ~~~~~~Widl~~p~~~e~~~l~~~~~l~~~~~ed~~~~~~r--~--------r~e~~d~~~~i~~~~~~~-~~~~~~~~~ 97 (322)
T COG0598 29 PEDGFVWIDLVEPDDEELEWLAKTFGLHPLALEDLLDAEQR--P--------KVERYDDYLFIVLRDVNL-EEEEDKAET 97 (322)
T ss_pred CCCCeEEEECCCCCHHHHHHHHHhcCCCcchHHHHhCcccC--C--------ceEeeCCEEEEEEEeecc-ccccccccc
Confidence 44445569999999999999999999999999999999999 9 999999999999999999 665555567
Q ss_pred ceeeeeeecCCeEEEEeeccCCCCccccccHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHH
Q 013367 258 PIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIE 337 (444)
Q Consensus 258 ~VslR~W~~~n~IIS~~h~kg~~~~R~V~aI~eV~e~L~aGg~~gP~s~~e~Ia~La~rLt~~~d~l~~k~L~d~aDelE 337 (444)
+.+...+.++++||++ .++..++++++..+..| ...++++.+++.+|.+.+++..-++ ...+.+++++||
T Consensus 98 -~~v~~i~~~~~liT~r-------~~~~~~~~~vr~r~~~~-~~~~~~~~~l~~~lld~i~d~~~~~-le~i~~~~~~ie 167 (322)
T COG0598 98 -EPVSIIVGKRRLITIR-------HRPLPAFDRVRERLEKG-TLLTRGADELLYALLDAIVDNYFPV-LEQIEDELEAIE 167 (322)
T ss_pred -eeEEEEEeCCEEEEEe-------cCCCccHHHHHHHHhcc-ccccCCHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHH
Confidence 9999999999999999 78999999999999997 5779999999999999999999999 999999999999
Q ss_pred HHHhhhccCcchhhHHHhhhHHHHHHhhceeEEeeccchhHHHHHHHHh----hcccchHHHHHHHHHHHHHHHHHHHHH
Q 013367 338 LKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ----HLRGNVARTLLEGIRKNAREMIEEQEA 413 (444)
Q Consensus 338 lk~lnr~~~ed~~l~~~ilr~eI~~LRrQvIrvRRyL~PQREii~eL~~----~L~~~d~r~~L~Ei~~rlrrmlEElDA 413 (444)
+++... ...+ .-++|..||++++++|++|.|+++++..|++ ++.+++ +..++++.+.+.+++|..++
T Consensus 168 ~~l~~~-~~~~-------~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~-~~~l~dv~~~~~~~~~~~~~ 238 (322)
T COG0598 168 DQLLAS-TTNE-------ELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEED-REYLRDVLDHLTQLIEMLEA 238 (322)
T ss_pred HHHhcC-ccHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999996 3334 4567999999999999999999999999999 567777 99999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhcccccc
Q 013367 414 VRGRLFTIQDVMQSTVRAWLQVCTKTTE 441 (444)
Q Consensus 414 vR~Rl~~IQDemqS~v~e~LnrrsY~~~ 441 (444)
.++++..++|+..|.++..+|+.|+...
T Consensus 239 ~~~~l~~l~d~~~s~is~~~N~imk~LT 266 (322)
T COG0598 239 LRERLSSLLDAYLSLINNNQNEIMKILT 266 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988654
No 3
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=99.82 E-value=5.2e-19 Score=162.37 Aligned_cols=232 Identities=21% Similarity=0.228 Sum_probs=207.1
Q ss_pred CCceeEEEecCCCccHHHHhhcCCCccHHHHHhhhcccchhhhhhhhhhhccceeecCceEEEecccCCCCCCCCCCCcc
Q 013367 179 AGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIP 258 (444)
Q Consensus 179 ~gP~Ww~Hlda~hp~v~~WL~~~~~L~pav~~AL~dEstRisP~mk~l~yeR~vRvagGLL~~LRGvN~gnP~~~pEDM~ 258 (444)
++..| +|+...+++...||.+.-.|||.....+.+.+.+ | +....++++++.+++... .+.....+.
T Consensus 2 ~~~~W-i~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~l~~~~~-~~~~~~~~~- 68 (292)
T PF01544_consen 2 DGFVW-IDLSGPDDEELEWLAEEFGLHPLTIEDALDPEER--P--------RIEVFDDYLFIVLRAPEY-EEEDDIDEE- 68 (292)
T ss_dssp SS-EE-EEEETTTCHHHHHHHHTTTS-HHHHHHHCCTSSS--S--------EEEEETTEEEEEEEEEEE-STTCCECCE-
T ss_pred CccEE-EEEeCCCHHHHHHHHHHhCcCHhHHHHHhCCCcC--C--------EEEEECCeEEEEEEEcch-hhccccccc-
Confidence 56778 9999999999999999988999999988888888 8 888999999999999999 777766666
Q ss_pred eeeeeeecCCeEEEEeeccCCCCccccccHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHH
Q 013367 259 IVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIEL 338 (444)
Q Consensus 259 VslR~W~~~n~IIS~~h~kg~~~~R~V~aI~eV~e~L~aGg~~gP~s~~e~Ia~La~rLt~~~d~l~~k~L~d~aDelEl 338 (444)
+.+..++.+++|||.. ..+...++++.+.+. ++...+.++.+++..+.+.+.+...+. ...+.++++++|.
T Consensus 69 ~~l~~~~~~~~lit~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~il~~~~~~~~~~-l~~l~~~l~~le~ 139 (292)
T PF01544_consen 69 SPLSFILGDNFLITVH-------RDPLPFIDELRERLE-SRNERPSSPEDLLYAILDEIVDDYFEV-LEELEDELDELED 139 (292)
T ss_dssp EEEEEEEETTEEEEEE-------SSSSHCHHHHHHHHH-STTCSCSSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred ceEEEEEecceEEEEE-------CCCChHHHHHHHHhh-ccCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 6899999999999999 888999999999999 434889999999999999999999999 9999999999999
Q ss_pred HHhhhccCcchhhHHHhhhHHHHHHhhceeEEeeccchhHHHHHHHHh-----hcccchHHHHHHHHHHHHHHHHHHHHH
Q 013367 339 KFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ-----HLRGNVARTLLEGIRKNAREMIEEQEA 413 (444)
Q Consensus 339 k~lnr~~~ed~~l~~~ilr~eI~~LRrQvIrvRRyL~PQREii~eL~~-----~L~~~d~r~~L~Ei~~rlrrmlEElDA 413 (444)
.+.+. ...+ .-.+|..+|++++++|+++.|+++++.+++. ++..+. +..++++.+++.++.+..+.
T Consensus 140 ~~~~~-~~~~-------~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 210 (292)
T PF01544_consen 140 ELDDR-PSNE-------LLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDED-KEYLRDLLDRIERLLERAES 210 (292)
T ss_dssp HHTHT-TTHH-------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred hcccc-cchh-------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhH-HHHHHHHHHHHHHHHHHHHH
Confidence 99554 4444 5577999999999999999999999977776 555555 88899999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhcccccc
Q 013367 414 VRGRLFTIQDVMQSTVRAWLQVCTKTTE 441 (444)
Q Consensus 414 vR~Rl~~IQDemqS~v~e~LnrrsY~~~ 441 (444)
.++|+..+++..++.++.++|+.|+++.
T Consensus 211 ~~~~~~~l~~~~~~~~~~~~n~~m~~LT 238 (292)
T PF01544_consen 211 LRERLESLQDLYQSKLSNRQNRVMKVLT 238 (292)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988754
No 4
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=99.75 E-value=7.2e-17 Score=153.84 Aligned_cols=234 Identities=15% Similarity=0.111 Sum_probs=197.2
Q ss_pred CCCceeEEEecCCCccH-HHHhhcCCCccHHHHHhhhcccchhhhhhhhhhhccceeecCceEEEecccCCCCCCCCCCC
Q 013367 178 PAGPVWWCHMLAGHPSV-EAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDD 256 (444)
Q Consensus 178 ~~gP~Ww~Hlda~hp~v-~~WL~~~~~L~pav~~AL~dEstRisP~mk~l~yeR~vRvagGLL~~LRGvN~gnP~~~pED 256 (444)
+.+..| +|+....+.- ..||.++=.+||...+.+.+.+.+ | +....++++++.+..... +++... .
T Consensus 24 ~~~~~W-idl~~p~~~e~~~~l~~~~~l~~~~~ed~~~~~~~--~--------k~e~~~~~~~i~~~~~~~-~~~~~~-~ 90 (318)
T TIGR00383 24 LNTVLW-IDLIEPTDEETLAKLGQFFAIHPLALEDILNSPQR--P--------KVEEDEDHLFIISFFLNE-DEDDTF-E 90 (318)
T ss_pred CCceEE-EEccCCCcHHHHHHHHHHcCcCcchHHHhhCCCCC--C--------cEEEECCEEEEEEEeeec-cCCCcc-e
Confidence 455566 9988877777 799999867899888888888888 8 877889999999998877 432111 2
Q ss_pred cceeeeeeecCCeEEEEeeccCCCCccccccHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHH
Q 013367 257 IPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEI 336 (444)
Q Consensus 257 M~VslR~W~~~n~IIS~~h~kg~~~~R~V~aI~eV~e~L~aGg~~gP~s~~e~Ia~La~rLt~~~d~l~~k~L~d~aDel 336 (444)
. +.+..++.+|+|||++ ..+..+++++.+.+..++..-..++.+++..+.+.++++..+. .+.|.++++++
T Consensus 91 ~-~~l~~~l~~~~liTv~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~il~~ivd~~~~~-l~~l~~~~~~l 161 (318)
T TIGR00383 91 T-EQVSFILGKNLLFTIH-------ERELPAFDSIRERIRTSQKVFEKGADYLLYDIFDAIIDSYFPL-LENIEDELEEL 161 (318)
T ss_pred e-EEEEEEEECCEEEEEE-------cCCCCcHHHHHHHHHhCchhhhCCHHHHHHHHHHHHHhccHHH-HHHHHHHHHHH
Confidence 3 6788899999999999 8888999999999988742233488999999999999999999 99999999999
Q ss_pred HHHHhhhccCcchhhHHHhhhHHHHHHhhceeEEeeccchhHHHHHHHHh--hcc--cchHHHHHHHHHHHHHHHHHHHH
Q 013367 337 ELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ--HLR--GNVARTLLEGIRKNAREMIEEQE 412 (444)
Q Consensus 337 Elk~lnr~~~ed~~l~~~ilr~eI~~LRrQvIrvRRyL~PQREii~eL~~--~L~--~~d~r~~L~Ei~~rlrrmlEElD 412 (444)
|+.++.. +... .-.+|-.||++++++|+.+.|+++++..|.. .+. ..+.+..++++.+.+.++.+..+
T Consensus 162 e~~l~~~-~~~~-------~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~~~~~~~~~~dv~~~~~~l~~~~~ 233 (318)
T TIGR00383 162 EDEIISG-PTST-------LMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQTEEVREYLRDIYDHILSLLEMIE 233 (318)
T ss_pred HHHHhcC-CCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999874 3323 3467999999999999999999999999987 222 23348899999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhcccccc
Q 013367 413 AVRGRLFTIQDVMQSTVRAWLQVCTKTTE 441 (444)
Q Consensus 413 AvR~Rl~~IQDemqS~v~e~LnrrsY~~~ 441 (444)
..++++..++|...+.++.++|+.|+++.
T Consensus 234 ~~~e~l~~l~d~~~~~~s~~~N~~mk~LT 262 (318)
T TIGR00383 234 TYRELLSSLMDLYLSLVNNKMNEIMKILT 262 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988754
No 5
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=99.20 E-value=8.8e-10 Score=109.34 Aligned_cols=233 Identities=11% Similarity=0.042 Sum_probs=183.8
Q ss_pred CceeEEEecCCCccHHHHhhcCCCccHHHHHhhhcccchhhhhhhhhhhccceeecCceEEEecccCCCCCCCCCCCcce
Q 013367 180 GPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPI 259 (444)
Q Consensus 180 gP~Ww~Hlda~hp~v~~WL~~~~~L~pav~~AL~dEstRisP~mk~l~yeR~vRvagGLL~~LRGvN~gnP~~~pEDM~V 259 (444)
+..| +++....|+-.+|+.+.-.+|--..+++.+ ...|| |.-.-++|+.++..=... .++..+.--||
T Consensus 25 ~~vW-iDl~~Pt~eE~~~v~~~~gl~~pt~~~~ee--Ie~ss--------R~~~~~~~~~~~~~~~~~-~~~~~~~~~~v 92 (316)
T PRK11085 25 DAVW-IDLVEPDDDERLRVQSELGQSLATRPELED--IEASA--------RFFEDEDGLHIHSFFFFE-DAEDHAGNSTV 92 (316)
T ss_pred CCEE-EEcCCCCHHHHHHHHHHhCCCCCChhhHHH--HhhCc--------eEEEECCeEEEEEEEEec-CCCCCccceeE
Confidence 4566 988888889999999976676222333322 22346 777788887666544444 24444455556
Q ss_pred eeeeeecCCeEEEEeeccCCCCccccccHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHH
Q 013367 260 VLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNV-PRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIEL 338 (444)
Q Consensus 260 slR~W~~~n~IIS~~h~kg~~~~R~V~aI~eV~e~L~aGg~~g-P~s~~e~Ia~La~rLt~~~d~l~~k~L~d~aDelEl 338 (444)
+| .+.+++|||.| .....+++.+++.+..+ .+ ..+..+++..|.+.+.++.-+. .+.+...+|.+|.
T Consensus 93 ~f--il~~~~LvTvr-------~~~~~~f~~~~~r~~~~--~~~~~~~~~vl~~Lld~iVd~~ad~-lE~~~~~ld~ls~ 160 (316)
T PRK11085 93 AF--TIRDGRLFTLR-------ERELPAFRLYRMRARSQ--TLVDGNAYELLLDLFETKIEQLADE-IENIYSDLEKLSR 160 (316)
T ss_pred EE--EEECCEEEEEe-------cCCcchHHHHHHHHHhC--CcccCCHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHH
Confidence 65 45999999999 99999999999999877 33 5599999999999999999999 9999999999999
Q ss_pred HHhhhccCcchhhHHHhhhHHHHHHhhceeEEeeccchhHHHHHHHHh--hcccchHHHHHHHHHHHHHHHHHHHHHHhH
Q 013367 339 KFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ--HLRGNVARTLLEGIRKNAREMIEEQEAVRG 416 (444)
Q Consensus 339 k~lnr~~~ed~~l~~~ilr~eI~~LRrQvIrvRRyL~PQREii~eL~~--~L~~~d~r~~L~Ei~~rlrrmlEElDAvR~ 416 (444)
.++.. ...+ .+.-++ +.|.++++.+.++|+.+.|.++++..|+. ++.... +..++.+.+.+.+..+-.+.+++
T Consensus 161 ~if~~-~~~~--~~~~~l-~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~~~~~~~~-~~~~~~~~~Di~~l~~~~~~~~~ 235 (316)
T PRK11085 161 VIMEG-HQGD--EYDEAL-STLAELEDIGWKVRLCLMDTQRALNFLVRKARLPGGQ-LEQAREILRDIESLLPHNESLFQ 235 (316)
T ss_pred HhccC-CCch--hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99973 2222 244555 56999999999999999999999999987 454444 56678888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccc
Q 013367 417 RLFTIQDVMQSTVRAWLQVCTKTTE 441 (444)
Q Consensus 417 Rl~~IQDemqS~v~e~LnrrsY~~~ 441 (444)
++..++|...+.++..+|+.|....
T Consensus 236 ~~~~l~d~~~~~i~~~~N~~mk~lT 260 (316)
T PRK11085 236 KVNFLMQAAMGFINIEQNRIIKIFS 260 (316)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999887654
No 6
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=71.75 E-value=48 Score=32.43 Aligned_cols=144 Identities=19% Similarity=0.232 Sum_probs=93.0
Q ss_pred HHHHHHHHHcCCCCCCC-CHHHHHHHHHHHHhhhhhhhhhhhhhhhhhH----------------HHHHHhhhccCcchh
Q 013367 288 ITEVQELLFVGGYNVPR-TVHEVIAHLACRLSRWDDRLFRKTIFGAADE----------------IELKFVNRRNLEDMN 350 (444)
Q Consensus 288 I~eV~e~L~aGg~~gP~-s~~e~Ia~La~rLt~~~d~l~~k~L~d~aDe----------------lElk~lnr~~~ed~~ 350 (444)
+.+++..|.+=| .+|. |.++--..|..-++..-+.+ ...+.|.-++ +...+.. ....++
T Consensus 89 l~~~~~eL~~lG-~~~~~~~~~~~~~l~~~~~~f~~~~-~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~--~~~~~~ 164 (295)
T PF01031_consen 89 LQEAEKELKRLG-PPRPETPEEQRAYLLQIISKFSRIF-KDAIDGEYSDEFSTNELRGGARIRYIFNEWFDK--FLEKID 164 (295)
T ss_dssp HHHHHHHHHTHH-HCSSSCHHHHHHHHHHHHHHHHHHH-HHHHTT-------TTS--HHHHHHHHHHHHHHH--HHHHTS
T ss_pred HHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHH-HHHhcCCccccccccccchhhHHHHHHHhhhhh--hhhhhc
Confidence 456666776633 4455 77777777777776666666 7777776664 2222222 222345
Q ss_pred hHHHhhhHHHHHHhhceeEEeeccchhHHHHHHHHh----hcccchHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHH
Q 013367 351 LFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ----HLRGNVARTLLEGIRKNAREMIEE-QEAVRGRLFTIQDVM 425 (444)
Q Consensus 351 l~~~ilr~eI~~LRrQvIrvRRyL~PQREii~eL~~----~L~~~d~r~~L~Ei~~rlrrmlEE-lDAvR~Rl~~IQDem 425 (444)
.+.-+...+|+.+-+..-..+=.+-+-.+++..|.+ -+.+.. ...++.+.+.+.++++. ++..=+|--.+++.+
T Consensus 165 ~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa-~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~~~i 243 (295)
T PF01031_consen 165 PFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPA-LQCVEEVHEELQRIVEQVLEKEFERFPNLKEAI 243 (295)
T ss_dssp HHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHH-HHHHHHHHHHHHHHHHHHHCHHHTTSHHHHHHH
T ss_pred cccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhhcchhcCCchHHHHHH
Confidence 566777888888888888888888888899999988 556666 88999999999999988 444445555666666
Q ss_pred HHHHHHHHhhc
Q 013367 426 QSTVRAWLQVC 436 (444)
Q Consensus 426 qS~v~e~Lnrr 436 (444)
.+.+.+-|++.
T Consensus 244 ~~~v~~~l~~~ 254 (295)
T PF01031_consen 244 KEAVQQLLEEC 254 (295)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655543
No 7
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=69.78 E-value=15 Score=39.83 Aligned_cols=131 Identities=24% Similarity=0.325 Sum_probs=81.9
Q ss_pred hhhccceeecC--ceEEEecccCCCCCCCCCCCcceeeeeeecCCeEEEE--eeccCCCCccccccHHHHHHHHHcCCCC
Q 013367 226 LLYEVPVRVAG--GLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITA--LHVKGPVSSNNVLGITEVQELLFVGGYN 301 (444)
Q Consensus 226 l~yeR~vRvag--GLL~~LRGvN~gnP~~~pEDM~VslR~W~~~n~IIS~--~h~kg~~~~R~V~aI~eV~e~L~aGg~~ 301 (444)
-+|||+.++.| |-+.-+ -+-. .|+.+--+--=-+=.|+++.-||=. .|-||..+..+|+.-. -.+...| .
T Consensus 285 tiYErAg~i~g~~GSiTqi-pIlT-MP~DDITHPIPDlTGYITEGQivl~r~l~~~gIyPpi~vlpSL--SRL~~~g--i 358 (463)
T COG1156 285 TIYERAGRIRGRKGSITQI-PILT-MPGDDITHPIPDLTGYITEGQIVLSRDLHRKGIYPPINVLPSL--SRLMKDG--I 358 (463)
T ss_pred HHHHhhceeccCCCceEEE-Eeee-cCCCCcCCCCCcccceeccceEEEEhhcccCCcCCCccccccH--HHHhhcc--c
Confidence 47999999988 433222 2222 4544322221246689999988888 6779999988887543 2333334 3
Q ss_pred CC---------------------CCHHHHHHHHH--HHHhhhhhhhhhhhhhhhhhHHHHHHhhhccCcc----------
Q 013367 302 VP---------------------RTVHEVIAHLA--CRLSRWDDRLFRKTIFGAADEIELKFVNRRNLED---------- 348 (444)
Q Consensus 302 gP---------------------~s~~e~Ia~La--~rLt~~~d~l~~k~L~d~aDelElk~lnr~~~ed---------- 348 (444)
|+ ++.-++ +.++ ..|+.|+..| -.-+|++|.+|++.--+++
T Consensus 359 G~g~TReDH~~~snql~a~YA~g~d~r~l-~avvge~aLs~~D~~~-----l~F~d~FE~~fi~qg~~enrsieetLdlg 432 (463)
T COG1156 359 GEGKTREDHGDVSNQLYAAYAEGRDLREL-VAVVGEEALSERDRKY-----LKFADLFEQRFIKQGRYENRSIEETLDLG 432 (463)
T ss_pred CCCccccccHHHHHHHHHHHhcchhHHHH-HHHhhhhhcchhHHHH-----HHHHHHHHHHHHhcccccCCCHHHHHHHh
Confidence 33 122222 2233 6788887766 3468999999999421122
Q ss_pred hhhHHHhhhHHHHHHhhcee
Q 013367 349 MNLFAIILNQEIRRLSRQVI 368 (444)
Q Consensus 349 ~~l~~~ilr~eI~~LRrQvI 368 (444)
-.||++.+..|+.+++.+.|
T Consensus 433 W~lL~~lp~~el~ri~~~~I 452 (463)
T COG1156 433 WELLSILPESELTRIKPDLI 452 (463)
T ss_pred HHHHHhCCHhHhccCCHHHH
Confidence 24688888888888888776
No 8
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=42.07 E-value=1.5e+02 Score=28.14 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=37.4
Q ss_pred hHHHHHHhhceeEEeeccchhHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 013367 357 NQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWL 433 (444)
Q Consensus 357 r~eI~~LRrQvIrvRRyL~PQREii~eL~~~L~~~d~r~~L~Ei~~rlrrmlEElDAvR~Rl~~IQDemqS~v~e~L 433 (444)
+.+|..+++++-..|..+.-.++.+...-.-|. ......+...+......++++..+.++..++..+....+..+
T Consensus 76 ~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~ 150 (302)
T PF10186_consen 76 RERIERLRKRIEQKRERLEELRESLEQRRSRLS--ASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLI 150 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333333333333 113344555566666666777777777666666665554443
No 9
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.04 E-value=82 Score=30.43 Aligned_cols=87 Identities=16% Similarity=0.197 Sum_probs=59.5
Q ss_pred hhhhhhhhhHHHHHHhhhccCcchhhHHHhhhHHHHHHhhceeEEeeccchhHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 013367 326 RKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAR 405 (444)
Q Consensus 326 ~k~L~d~aDelElk~lnr~~~ed~~l~~~ilr~eI~~LRrQvIrvRRyL~PQREii~eL~~~L~~~d~r~~L~Ei~~rlr 405 (444)
+..+.++..+++..+-. ++.|+..|..+.=.+.+++.-|+.-+.+|-+-+..-. ...+++.--+.
T Consensus 44 id~~~~e~~~L~~e~~~-------------l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~--~~~~~l~p~m~ 108 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQ-------------LEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE--ETRQELVPLME 108 (251)
T ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 44556666666666555 7788999999988999999999999999988544322 34455556666
Q ss_pred HHHHHHHHH------------hHHHHHHHHHHHH
Q 013367 406 EMIEEQEAV------------RGRLFTIQDVMQS 427 (444)
Q Consensus 406 rmlEElDAv------------R~Rl~~IQDemqS 427 (444)
+|+++|+.. ++|+.-+.+.|.+
T Consensus 109 ~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~ 142 (251)
T PF11932_consen 109 QMIDELEQFVELDLPFLLEERQERLARLRAMLDD 142 (251)
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhc
Confidence 677766662 3466666666543
No 10
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=35.05 E-value=42 Score=29.58 Aligned_cols=55 Identities=29% Similarity=0.410 Sum_probs=37.6
Q ss_pred hhhhhhhhhHHHHHHhhhccCcchhhHHHhhhHHHHHHhhceeEEeeccchhHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 013367 326 RKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAR 405 (444)
Q Consensus 326 ~k~L~d~aDelElk~lnr~~~ed~~l~~~ilr~eI~~LRrQvIrvRRyL~PQREii~eL~~~L~~~d~r~~L~Ei~~rlr 405 (444)
.++||++++.+|.++.. +..+|..|..++. ..+.+|. .|+--...||
T Consensus 3 k~~l~~~l~~le~~l~~-------------l~~~~~~LK~~~~-----------------~l~EEN~---~L~~EN~~Lr 49 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQ-------------LLEELEELKKQLQ-----------------ELLEENA---RLRIENEHLR 49 (107)
T ss_pred hHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH-----------------HHHHHHH---HHHHHHHHHH
Confidence 35788999999988877 7777888876543 2355555 4455566677
Q ss_pred HHHHHHHH
Q 013367 406 EMIEEQEA 413 (444)
Q Consensus 406 rmlEElDA 413 (444)
+.|.+++.
T Consensus 50 ~~l~~~~~ 57 (107)
T PF06156_consen 50 ERLEELEQ 57 (107)
T ss_pred HHHHHHhc
Confidence 77766654
No 11
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=33.43 E-value=3.4e+02 Score=25.75 Aligned_cols=75 Identities=12% Similarity=0.148 Sum_probs=45.9
Q ss_pred hhHHHHHHhhceeEEeeccchhHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013367 356 LNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAW 432 (444)
Q Consensus 356 lr~eI~~LRrQvIrvRRyL~PQREii~eL~~~L~~~d~r~~L~Ei~~rlrrmlEElDAvR~Rl~~IQDemqS~v~e~ 432 (444)
++.+|...|.++-.+|..+..++..+........ +. ...+.+..+.+...-+.+..+...+...+..+.+.+..+
T Consensus 82 ~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~i 156 (302)
T PF10186_consen 82 LRKRIEQKRERLEELRESLEQRRSRLSASQDLVE-SR-QEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEI 156 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888773332222 22 334455555555555555556666666666666665543
No 12
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=32.01 E-value=1.3e+02 Score=30.13 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=13.0
Q ss_pred cceeecCceEEEecccCC
Q 013367 230 VPVRVAGGLLFELLGQSA 247 (444)
Q Consensus 230 R~vRvagGLL~~LRGvN~ 247 (444)
...-++++.|++.|-...
T Consensus 100 v~~i~~~~~liT~r~~~~ 117 (322)
T COG0598 100 VSIIVGKRRLITIRHRPL 117 (322)
T ss_pred EEEEEeCCEEEEEecCCC
Confidence 666777888888887444
No 13
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=31.88 E-value=1e+02 Score=26.66 Aligned_cols=73 Identities=16% Similarity=0.291 Sum_probs=52.3
Q ss_pred hhHHHHHHhhceeEEeeccchhHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013367 356 LNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRA 431 (444)
Q Consensus 356 lr~eI~~LRrQvIrvRRyL~PQREii~eL~~~L~~~d~r~~L~Ei~~rlrrmlEElDAvR~Rl~~IQDemqS~v~e 431 (444)
+..+|..++.+-+.++ ...++.+.+++..-........-.+....+.++-.++.+.|.|..++|-+.+..+-+
T Consensus 15 l~~~L~~v~~~~l~l~---~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q~lI~g 87 (106)
T PF05837_consen 15 LQEKLSDVEKKRLRLK---RRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVMKNVFQALIVG 87 (106)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555554 357788888887555444333346778888899999999999999999999987753
No 14
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=30.55 E-value=1e+02 Score=25.12 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 013367 404 AREMIEEQEAVRGRLFTIQDVMQSTVRAWLQV 435 (444)
Q Consensus 404 lrrmlEElDAvR~Rl~~IQDemqS~v~e~Lnr 435 (444)
|+.+|-|=..+..|+|.+|||++--.++-++.
T Consensus 5 Lr~VL~ERNeLK~~v~~leEEL~~yk~~~~~~ 36 (60)
T PF11461_consen 5 LREVLQERNELKARVFLLEEELAYYKSELLPD 36 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 67888999999999999999999877766554
No 15
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.57 E-value=67 Score=31.01 Aligned_cols=45 Identities=24% Similarity=0.314 Sum_probs=36.6
Q ss_pred cchhHHHHHHHHh-hcccchH-----H---HHHHHHHHHHHHHHHHHHHHhHHH
Q 013367 374 LHAREEIVFELYQ-HLRGNVA-----R---TLLEGIRKNAREMIEEQEAVRGRL 418 (444)
Q Consensus 374 L~PQREii~eL~~-~L~~~d~-----r---~~L~Ei~~rlrrmlEElDAvR~Rl 418 (444)
+.+|+.++.+... |+.|... | ..|-.++..+...|||.|.+++|-
T Consensus 52 idAQ~~~~~r~i~yW~~g~G~~yNp~R~e~~~lv~l~~~le~ViEdIEk~eG~r 105 (190)
T COG4752 52 IDAQRIVIQRQINYWLSGEGRKYNPTRYEIVQLVRLAYTLEEVIEDIEKEEGRR 105 (190)
T ss_pred cHHHHHHHHHHHHHHhcccCCcCCcCHHHHHHHHhHHHHHHHHHHHHHhhcCCC
Confidence 5789999999999 8887651 1 257778888999999999999873
No 16
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.19 E-value=4.6e+02 Score=23.85 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=41.2
Q ss_pred hhHHHHHHhhceeEEeeccchhHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhH
Q 013367 356 LNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRG 416 (444)
Q Consensus 356 lr~eI~~LRrQvIrvRRyL~PQREii~eL~~~L~~~d~r~~L~Ei~~rlrrmlEElDAvR~ 416 (444)
+..+|..|+.|+-.++..+.--+.-+..|..-+...+.+..+.+.......+-+-|+.+|+
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777887777777777666666777776777666566666666666666666666654
No 17
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=26.45 E-value=3.4e+02 Score=27.82 Aligned_cols=75 Identities=11% Similarity=0.040 Sum_probs=46.1
Q ss_pred HHHHhhceeEEeeccchhHHHHHHHHh---hcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhc
Q 013367 360 IRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQVC 436 (444)
Q Consensus 360 I~~LRrQvIrvRRyL~PQREii~eL~~---~L~~~d~r~~L~Ei~~rlrrmlEElDAvR~Rl~~IQDemqS~v~e~Lnrr 436 (444)
+..+=+++-++++.+...|+++.-+.. .|... ...-.+..++++.+.+|++.+-+++..+.|.+++.+..-++--
T Consensus 171 ~~~~l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~--~~~~~~~~~~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i 248 (316)
T PRK11085 171 YDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRK--ARLPGGQLEQAREILRDIESLLPHNESLFQKVNFLMQAAMGFI 248 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445666666666677776655444 23221 1122334466778888888888888888887777777666543
No 18
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=26.40 E-value=94 Score=24.85 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=25.2
Q ss_pred cccHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHh
Q 013367 285 VLGITEVQELLFVGGYNVPRTVHEVIAHLACRLS 318 (444)
Q Consensus 285 V~aI~eV~e~L~aGg~~gP~s~~e~Ia~La~rLt 318 (444)
=.||+.|++++..| -|++|-|+.+|..|-
T Consensus 14 Q~AvE~Iq~LMaqG-----mSsgEAI~~VA~~iR 42 (51)
T PF03701_consen 14 QQAVERIQELMAQG-----MSSGEAIAIVAQEIR 42 (51)
T ss_pred HHHHHHHHHHHHhc-----ccHHHHHHHHHHHHH
Confidence 35899999999999 689999999998763
No 19
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=26.30 E-value=86 Score=25.36 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=32.4
Q ss_pred ccccccHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHh
Q 013367 282 SNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLS 318 (444)
Q Consensus 282 ~R~V~aI~eV~e~L~aGg~~gP~s~~e~Ia~La~rLt 318 (444)
..+|.++..|.+.|..++..+--+.+++|..||..|.
T Consensus 37 ~~RI~aia~vh~~L~~~~~~~~v~l~~yl~~L~~~l~ 73 (76)
T PF07568_consen 37 QNRIQAIALVHEQLYQSEDLSEVDLREYLEELCEDLR 73 (76)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeecHHHHHHHHHHHHH
Confidence 4578899999999999877788899999999998875
No 20
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=25.98 E-value=3.9e+02 Score=24.93 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=33.0
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 013367 381 VFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTV 429 (444)
Q Consensus 381 i~eL~~~L~~~d~r~~L~Ei~~rlrrmlEElDAvR~Rl~~IQDemqS~v 429 (444)
+..|++--.+.+--..|.+..+.+...-++++.++.|+..+.+.++..+
T Consensus 32 Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (151)
T PF14584_consen 32 YDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCV 80 (151)
T ss_pred HHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444443446777777888888888888888888877776554
No 21
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=25.14 E-value=4.8e+02 Score=24.45 Aligned_cols=41 Identities=10% Similarity=0.187 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcccc
Q 013367 399 GIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQVCTKT 439 (444)
Q Consensus 399 Ei~~rlrrmlEElDAvR~Rl~~IQDemqS~v~e~LnrrsY~ 439 (444)
+....++...++++.+.+++..++|.+++.+....+..+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (292)
T PF01544_consen 189 EDKEYLRDLLDRIERLLERAESLRERLESLQDLYQSKLSNR 229 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888888888888888888777777665544
No 22
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=24.53 E-value=1.1e+02 Score=31.62 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=53.6
Q ss_pred hhhhhhhhhHHHHHHhhhccCcchhhHHHhhhHHHHHHhhceeEEeeccchhHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 013367 326 RKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAR 405 (444)
Q Consensus 326 ~k~L~d~aDelElk~lnr~~~ed~~l~~~ilr~eI~~LRrQvIrvRRyL~PQREii~eL~~~L~~~d~r~~L~Ei~~rlr 405 (444)
-+.|+.+++.+|-+.= | +-.+-.+|+..++++|--+.-|+--+.+--..|.++ ...+++|.+.++
T Consensus 47 EaelesqL~q~etrnr------d-------l~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Ledd--lsqt~aikeql~ 111 (333)
T KOG1853|consen 47 EAELESQLDQLETRNR------D-------LETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDD--LSQTHAIKEQLR 111 (333)
T ss_pred HHHHHHHHHHHHHHHH------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 4566777777776432 3 555677889999999987777776666555566544 478899999999
Q ss_pred HHHHHHHHH
Q 013367 406 EMIEEQEAV 414 (444)
Q Consensus 406 rmlEElDAv 414 (444)
.+|-|||--
T Consensus 112 kyiReLEQa 120 (333)
T KOG1853|consen 112 KYIRELEQA 120 (333)
T ss_pred HHHHHHHHh
Confidence 999988753
No 23
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=24.50 E-value=1.2e+02 Score=31.54 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=34.7
Q ss_pred hhHHHHHHhhceeEEeeccchhHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Q 013367 356 LNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIE 409 (444)
Q Consensus 356 lr~eI~~LRrQvIrvRRyL~PQREii~eL~~~L~~~d~r~~L~Ei~~rlrrmlE 409 (444)
+++|+++||.|+. ..|.+-...+.++..+. ..+++-+.+++|-|.
T Consensus 234 Lr~EV~RLR~qL~------~sq~e~~~k~~~~~~ee---k~ireEN~rLqr~L~ 278 (310)
T PF09755_consen 234 LRQEVSRLRQQLA------ASQQEHSEKMAQYLQEE---KEIREENRRLQRKLQ 278 (310)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 7788999999886 67888888888876654 467777777777653
No 24
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=23.29 E-value=2.8e+02 Score=25.00 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=41.8
Q ss_pred chhHHHHHHHHhhcccc----------hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 013367 375 HAREEIVFELYQHLRGN----------VARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQS 427 (444)
Q Consensus 375 ~PQREii~eL~~~L~~~----------d~r~~L~Ei~~rlrrmlEElDAvR~Rl~~IQDemqS 427 (444)
-|+++.+..|...+... =-+..|+|+++..-+.-+.+.++.+|+.=+.+-.+.
T Consensus 55 DPr~~~~~~L~~~i~~~~g~ivvyN~sfE~~rL~ela~~~p~~~~~l~~I~~r~vDL~~~f~~ 117 (130)
T PF11074_consen 55 DPRRELIEALIKAIGSIYGSIVVYNKSFEKTRLKELAELFPDYAEKLNSIIERTVDLLDPFKN 117 (130)
T ss_pred CchHHHHHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47788888888866666 126789999999999999999999998877776543
No 25
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=22.51 E-value=1e+02 Score=30.17 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=12.7
Q ss_pred cceeecCceEEEecccCC
Q 013367 230 VPVRVAGGLLFELLGQSA 247 (444)
Q Consensus 230 R~vRvagGLL~~LRGvN~ 247 (444)
.-.-++++.|++++-...
T Consensus 94 l~~~l~~~~liTv~~~~~ 111 (318)
T TIGR00383 94 VSFILGKNLLFTIHEREL 111 (318)
T ss_pred EEEEEECCEEEEEEcCCC
Confidence 556678888888865443
No 26
>PRK09546 zntB zinc transporter; Reviewed
Probab=22.23 E-value=2e+02 Score=28.71 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=13.7
Q ss_pred cceeecCceEEEecccCC
Q 013367 230 VPVRVAGGLLFELLGQSA 247 (444)
Q Consensus 230 R~vRvagGLL~~LRGvN~ 247 (444)
.-.-++.+.|++++-...
T Consensus 104 l~~~l~~~~lITv~~~~~ 121 (324)
T PRK09546 104 MRVYITDRLIVSTRHRKV 121 (324)
T ss_pred EEEEEeCCEEEEEecCCc
Confidence 667788899999876554
No 27
>PF08361 TetR_C_2: MAATS-type transcriptional repressor, C-terminal region; InterPro: IPR013572 This entry is named after the various transcriptional regulatory proteins that it contains, including MtrR (Q6RV06 from SWISSPROT), AcrR (P34000 from SWISSPROT), ArpR (Q9KJC4 from SWISSPROT), TtgR (Q9AIU0 from SWISSPROT) and SmeT (Q8KLP4 from SWISSPROT). These are members of the TetR (tetracycline resistance) family of transcriptional repressors, that are involved in the control of expression of multidrug resistance proteins [, , ]. ; GO: 0003677 DNA binding; PDB: 3BCG_B 2QOP_A 2UXP_B 2XDN_C 2UXH_A 2UXI_B 2UXO_A 2UXU_B 2WUI_A 2W53_A ....
Probab=20.75 E-value=1.9e+02 Score=24.79 Aligned_cols=56 Identities=21% Similarity=0.181 Sum_probs=36.8
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 013367 378 EEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWL 433 (444)
Q Consensus 378 REii~eL~~~L~~~d~r~~L~Ei~~rlrrmlEElDAvR~Rl~~IQDemqS~v~e~L 433 (444)
|+.+.+.++.+..|.-.+.+-+|.=-=.+++||..++++|-.-.+.+....+...|
T Consensus 7 r~~~~~~l~~l~~d~~~Rrv~~I~~~kcE~~~e~~~~~~r~~~~~~~~~~~i~~~l 62 (121)
T PF08361_consen 7 REALIEALRRLAEDERQRRVFEILFHKCEYVEEMAPVRERRREAQREALARIERLL 62 (121)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHHS--SSTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666656677777776688899999999887777766555544433
No 28
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=20.71 E-value=1e+02 Score=27.61 Aligned_cols=55 Identities=35% Similarity=0.426 Sum_probs=37.8
Q ss_pred hhhhhhhhhHHHHHHhhhccCcchhhHHHhhhHHHHHHhhceeEEeeccchhHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 013367 326 RKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAR 405 (444)
Q Consensus 326 ~k~L~d~aDelElk~lnr~~~ed~~l~~~ilr~eI~~LRrQvIrvRRyL~PQREii~eL~~~L~~~d~r~~L~Ei~~rlr 405 (444)
.++||+++..+|..+.. +-.+|..|..++. ..+.+|. .|+--.+.||
T Consensus 3 k~elfd~l~~le~~l~~-------------l~~el~~LK~~~~-----------------el~EEN~---~L~iEN~~Lr 49 (110)
T PRK13169 3 KKEIFDALDDLEQNLGV-------------LLKELGALKKQLA-----------------ELLEENT---ALRLENDKLR 49 (110)
T ss_pred hhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH-----------------HHHHHHH---HHHHHHHHHH
Confidence 46889999999998877 6677887776542 2355565 4555566777
Q ss_pred HHHHHHHH
Q 013367 406 EMIEEQEA 413 (444)
Q Consensus 406 rmlEElDA 413 (444)
+.|++++.
T Consensus 50 ~~l~~~~~ 57 (110)
T PRK13169 50 ERLEELEA 57 (110)
T ss_pred HHHHHhhc
Confidence 77776533
No 29
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=20.68 E-value=34 Score=29.19 Aligned_cols=88 Identities=24% Similarity=0.337 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHhhhccCcchhhHHHhhhHHHHHHhhceeEEeeccchhHHHHH
Q 013367 303 PRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVF 382 (444)
Q Consensus 303 P~s~~e~Ia~La~rLt~~~d~l~~k~L~d~aDelElk~lnr~~~ed~~l~~~ilr~eI~~LRrQvIrvRRyL~PQREii~ 382 (444)
|.-|.+||..|+..+..-. .+..++..++-. ++.+|..++.+.-.++..|.--.....
T Consensus 20 ~~eVD~fl~~l~~~~~~l~---------~e~~~L~~~~~~-------------l~~~l~~~~~~~~~l~~~l~~aq~~a~ 77 (131)
T PF05103_consen 20 PDEVDDFLDELAEELERLQ---------RENAELKEEIEE-------------LQAQLEELREEEESLQRALIQAQETAD 77 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHC-------------CCCT-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH-------------HHhhhhhhhhHHHHHHHhhhhhhhhHH
Confidence 7777777777776553322 333344433322 444455555555555555433333333
Q ss_pred HHHhhcccchHHHHHHHHHHHHHHHHHHHHH
Q 013367 383 ELYQHLRGNVARTLLEGIRKNAREMIEEQEA 413 (444)
Q Consensus 383 eL~~~L~~~d~r~~L~Ei~~rlrrmlEElDA 413 (444)
++..--.. .|...+.+......+++++..+
T Consensus 78 ~~~~~A~~-eA~~i~~~A~~~a~~i~~~A~~ 107 (131)
T PF05103_consen 78 EIKAEAEE-EAEEIIEEAQKEAEEIIEEARA 107 (131)
T ss_dssp -------------------------------
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33331111 1345566666666555554433
No 30
>PRK11637 AmiB activator; Provisional
Probab=20.54 E-value=4.9e+02 Score=27.14 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=17.5
Q ss_pred hhHHHHHHhhceeEEeeccchhHHHHHHHHh
Q 013367 356 LNQEIRRLSRQVIRVKWSLHAREEIVFELYQ 386 (444)
Q Consensus 356 lr~eI~~LRrQvIrvRRyL~PQREii~eL~~ 386 (444)
++++|..+..++-..+.-+.-+++.+.+++.
T Consensus 101 ~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 101 LNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666665555555555555555555544
No 31
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=20.48 E-value=85 Score=28.57 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=22.2
Q ss_pred hhhhhhhhhHHHHHHhhhccCcchhhHHHhhhHHHHHHhhc
Q 013367 326 RKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQ 366 (444)
Q Consensus 326 ~k~L~d~aDelElk~lnr~~~ed~~l~~~ilr~eI~~LRrQ 366 (444)
.+.|||+++.+|..+.. +-.+|..|+++
T Consensus 3 KkeiFd~v~~le~~l~~-------------l~~el~~lK~~ 30 (114)
T COG4467 3 KKEIFDQVDNLEEQLGV-------------LLAELGGLKQH 30 (114)
T ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH
Confidence 57899999999998887 55667777655
Done!