BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013368
(444 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q7L|A Chain A, Zn-binding Domain Of The T347g Mutant Of Human
Aminoacylase- I
pdb|1Q7L|C Chain C, Zn-binding Domain Of The T347g Mutant Of Human
Aminoacylase- I
Length = 198
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 96/186 (51%), Positives = 123/186 (66%)
Query: 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQL 90
+ FR YL+I T QP PDY A F A L L Q +E A + +L WPG+NP L
Sbjct: 13 VTLFRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTVLTWPGTNPTL 72
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
SILLNSHTDVVP WSH PF A DS+G I+ARG+QDMKCV +QYLEA+RRLK G
Sbjct: 73 SSILLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYARGAQDMKCVSIQYLEAVRRLKVEG 132
Query: 151 FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERC 210
+ R+++++FVPDEE+GGH G E F F++L G LDEG+A+ T+ + FY+ER
Sbjct: 133 HRFPRTIHMTFVPDEEVGGHQGMELFVQRPEFHALRAGFALDEGIANPTDAFTVFYSERS 192
Query: 211 PWWLVI 216
PWW+ +
Sbjct: 193 PWWVRV 198
>pdb|1Q7L|B Chain B, Zn-binding Domain Of The T347g Mutant Of Human
Aminoacylase- I
pdb|1Q7L|D Chain D, Zn-binding Domain Of The T347g Mutant Of Human
Aminoacylase- I
Length = 88
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 350 NPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFL 409
NPWW + N L +PEI PA+ D RY R G+PA+GFSPM TP+LLHDH+E L
Sbjct: 1 NPWWAAFSRVCKDMNLTL-EPEIMPAAGDNRYIRAVGVPALGFSPMNRTPVLLHDHDERL 59
Query: 410 NQAEYLKGIDIYESIIKAYAS 430
++A +L+G+DIY ++ A AS
Sbjct: 60 HEAVFLRGVDIYTRLLPALAS 80
>pdb|3IC1|A Chain A, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3IC1|B Chain B, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3ISZ|A Chain A, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
pdb|3ISZ|B Chain B, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
Length = 377
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 82/383 (21%), Positives = 150/383 (39%), Gaps = 33/383 (8%)
Query: 46 NPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS- 104
+P+ + I + E L + + + F N L L W P I HTDVVP+
Sbjct: 19 SPNDEGCQQIIAERLEKLGFQIEWMPF--NDTLNL--WAKHGTSEPVIAFAGHTDVVPTG 74
Query: 105 EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPD 164
+ ++WS PF A + G ++ RG+ DMK + A + ++ L D
Sbjct: 75 DENQWSSPPFSAEI-IDGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHKGTIALLITSD 133
Query: 165 EEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFY--AERCPWWLVIKARGAP 222
EE DG ++ + + + G S+ ++ R + +G
Sbjct: 134 EEATAKDGTIHVVETLMARDEKITYCM-VGEPSSAKNLGDVVKNGRRGSITGNLYIQGIQ 192
Query: 223 GHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNG 282
GH A Y + A + K+ ++ Q+D S+ +A + AGT S
Sbjct: 193 GHVA--YPHLAENPIHKAALFLQELTTYQWDKGNEFFPP----TSLQIANIHAGTGSN-- 244
Query: 283 FVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPI 342
N+ P+E F++R E +++++ E N+ + + S G+P
Sbjct: 245 ---NVIPAELYIQFNLRYCTEVTDEIIKQKVAEML--EKHNLKYRIEWNLS-----GKPF 294
Query: 343 LTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILL 402
LT + + A+ + G K E ++D R+ G + F P+ +T +
Sbjct: 295 LT---KPGKLLDSITSAIEETIGITPKAETGGGTSDGRFIALMGAEVVEFGPLNST---I 348
Query: 403 HDHNEFLNQAEYLKGIDIYESII 425
H NE ++ + K +IY ++
Sbjct: 349 HKVNECVSVEDLGKCGEIYHKML 371
>pdb|3PFO|A Chain A, Crystal Structure Of A Putative Acetylornithine
Deacetylase (Rpa2325) From Rhodopseudomonas Palustris
Cga009 At 1.90 A Resolution
pdb|3PFO|B Chain B, Crystal Structure Of A Putative Acetylornithine
Deacetylase (Rpa2325) From Rhodopseudomonas Palustris
Cga009 At 1.90 A Resolution
Length = 433
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 18/191 (9%)
Query: 92 SILLNSHTDVVPSEPSK-WSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
S++L H DVVP P WS P+ A + G RG+QD K + A+ ++ +G
Sbjct: 105 SLILQGHIDVVPEGPVDLWSDPPYEAKV-RDGWXIGRGAQDXKGGVSAXIFALDAIRTAG 163
Query: 151 FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERC 210
+ P V++ V +EE G+ ++L G D L + A+
Sbjct: 164 YAPDARVHVQTVTEEESTGN---------GALSTLXRGYRADACLIPEPTGHTLTRAQVG 214
Query: 211 PWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAE--GEV--- 265
W ++ RG P H A Y + + + +R F +L ++ G+V
Sbjct: 215 AVWFRLRVRGTPVHVA--YSETGTSAILSAXHLIRAFEEYTKELNAQAVRDPWFGQVKNP 272
Query: 266 VSVNMAFLKAG 276
+ N+ +K G
Sbjct: 273 IKFNVGIIKGG 283
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 6/134 (4%)
Query: 46 NPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105
PD + K + + ++ F K + W + P + HTDVVP+
Sbjct: 22 TPDDRDCQKLXAERLHKIGFAAEEXHFGNTKNI----WLRRGTKAPVVCFAGHTDVVPTG 77
Query: 106 P-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPD 164
P KW PF + G ++ RG+ D K ++ A R A S+ L D
Sbjct: 78 PVEKWDSPPF-EPAERDGRLYGRGAADXKTSIACFVTACERFVAKHPNHQGSIALLITSD 136
Query: 165 EEIGGHDGAEKFAD 178
EE DG K D
Sbjct: 137 EEGDALDGTTKVVD 150
>pdb|1LFW|A Chain A, Crystal Structure Of Pepv
Length = 470
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 14/147 (9%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP--- 84
D+I++ + ID+S+ D NA++ + ++ L FAK +
Sbjct: 14 DAILKDLEELIAIDSSE---DLENATEEYPVGKGPVDAMTKFLSFAKRDGFDTENFANYA 70
Query: 85 -----GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQY 139
G+ + I+ H DVVP+ W+ PF +D +G I+ RGS D K +
Sbjct: 71 GRVNFGAGDKRLGII--GHMDVVPA-GEGWTRDPFKMEIDEEGRIYGRGSADDKGPSLTA 127
Query: 140 LEAIRRLKASGFQPVRSVYLSFVPDEE 166
+ LK +GF+P + + +EE
Sbjct: 128 YYGMLLLKEAGFKPKKKIDFVLGTNEE 154
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 297 DIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLL 356
++R P TD +++ ++++++++ ++T+ + F P S+P L
Sbjct: 348 NVRYPQGTDPDTMIKQVLDKFS-GILDVTY---------NGFEEPHYVP--GSDPMVQTL 395
Query: 357 EEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLK 416
+ K GK G + T R F ERG+ A G P N P+++H NEF+ + +
Sbjct: 396 LKVYEKQTGKPGHEVVIGGGTYGRLF-ERGV-AFGAQP-ENGPMVMHAANEFMMLDDLIL 452
Query: 417 GIDIYESII 425
I IY I
Sbjct: 453 SIAIYAEAI 461
>pdb|3CT9|A Chain A, Crystal Structure Of A Putative Zinc Peptidase
(Np_812461.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 2.31 A Resolution
pdb|3CT9|B Chain B, Crystal Structure Of A Putative Zinc Peptidase
(Np_812461.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 2.31 A Resolution
Length = 356
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 14/208 (6%)
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
P+ILLNSH D V + W PF + G ++ GS D + L+ +L +
Sbjct: 67 PTILLNSHIDTV-KPVNGWRKDPFTPR-EENGKLYGLGSNDAGASVVSLLQVFLQLCRTS 124
Query: 151 FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERC 210
Q +YL+ +EE+ G +G E ++ IV TE A AE+
Sbjct: 125 -QNYNLIYLASC-EEEVSGKEGIESVLPG--LPPVSFAIV-----GEPTEXQPAI-AEKG 174
Query: 211 PWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNM 270
L + A G GH A+ ++A+ + I R +R + + +K V +N
Sbjct: 175 LXVLDVTATGKAGHAARDEGDNAIYKVLNDIAWFRDYRFEKESPLLGPVKX--SVTVINA 232
Query: 271 AFLKAGTPSPNGFVMNLQPSEAEAGFDI 298
P FV++++ +E + D+
Sbjct: 233 GTQHNVVPDKCTFVVDIRSNELYSNEDL 260
>pdb|4H2K|A Chain A, Crystal Structure Of The Catalytic Domain Of
Succinyl-Diaminopimelate Desuccinylase From Haemophilus
Influenzae
pdb|4H2K|B Chain B, Crystal Structure Of The Catalytic Domain Of
Succinyl-Diaminopimelate Desuccinylase From Haemophilus
Influenzae
Length = 269
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 46 NPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS- 104
+P+ + I + E L + + + F N L L W P I HTDVVP+
Sbjct: 22 SPNDEGCQQIIAERLEKLGFQIEWMPF--NDTLNL--WAKHGTSEPVIAFAGHTDVVPTG 77
Query: 105 EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPD 164
+ ++WS PF A + G ++ RG+ DMK + A + ++ L D
Sbjct: 78 DENQWSSPPFSAEI-IDGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHKGTIALLITSD 136
Query: 165 EEIGGHDG 172
EE DG
Sbjct: 137 EEATAKDG 144
>pdb|2ZOF|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Mn Bestatin
pdb|2ZOF|B Chain B, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Mn Bestatin
pdb|2ZOG|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Zn Bestatin
pdb|2ZOG|B Chain B, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Zn Bestatin
Length = 479
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 58 AQAEALSLESQTLEFAKNKPL--ILLKWPGSNPQLPSILLNSHTDVVPSE-PSKWSHHPF 114
E + + Q L PL ILL GS+PQ ++ + H DV P+ W PF
Sbjct: 61 GSVELVDIGKQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPF 120
Query: 115 GAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
++ +G ++ RGS D K ++ A+ + +G
Sbjct: 121 -TLVEREGKLYGRGSTDDKGPVAGWMNALEAYQKTG 155
>pdb|3T68|A Chain A, Crystal Structure Of The Catalytic Domain Of Dape Protein
From V.Cholerea
pdb|3T6M|A Chain A, Crystal Structure Of The Catalytic Domain Of Dape Protein
From V.Cholerea In The Zn Bound Form
Length = 268
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 6/122 (4%)
Query: 46 NPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105
P ++ + +AL E +++ F W Q P + HTDVVP+
Sbjct: 22 TPADAGCQDLMIERLKALGFEIESMVFEDTTNF----WARRGTQSPLFVFAGHTDVVPAG 77
Query: 106 P-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPD 164
P S+W PF + G + RG+ DMK + A+ R A S+ D
Sbjct: 78 PLSQWHTPPFEPTV-IDGFLHGRGAADMKGSLACMIVAVERFIAEHPDHQGSIGFLITSD 136
Query: 165 EE 166
EE
Sbjct: 137 EE 138
>pdb|2RB7|A Chain A, Crystal Structure Of Co-Catalytic Metallopeptidase
(Yp_387682.1) From Desulfovibrio Desulfuricans G20 At
1.60 A Resolution
pdb|2RB7|B Chain B, Crystal Structure Of Co-Catalytic Metallopeptidase
(Yp_387682.1) From Desulfovibrio Desulfuricans G20 At
1.60 A Resolution
Length = 364
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 125/328 (38%), Gaps = 70/328 (21%)
Query: 92 SILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK---CVGM-QYLEAIRRLK 147
+LL +H DVV +E F +++ ++ RG+ D K +G+ + + + LK
Sbjct: 67 GLLLXAHIDVVDAEDDL-----FVPRVEND-RLYGRGANDDKYAVALGLVXFRDRLNALK 120
Query: 148 ASG-FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFY 206
A+G Q ++ L DEEIGG +GA K + + + LD G +
Sbjct: 121 AAGRSQKDXALGLLITGDEEIGGXNGAAK---ALPLIRADYVVALDGG-----NPQQVIT 172
Query: 207 AERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV- 265
E+ + + G HGA+ + +L + +K E E
Sbjct: 173 KEKGIIDIKLTCTGKAAHGARPWXGVNAVDLLX----------EDYTRLKTLFAEENEDH 222
Query: 266 --VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESL---ERRIVEEWAPA 320
+VN+ ++AG + N P AE F+IRV D +L R+ V
Sbjct: 223 WHRTVNLGRIRAGEST------NKVPDVAEGWFNIRVTEHDDPGALIDKIRKTVSGTVSI 276
Query: 321 SRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDAR 380
R + P+ A DS P+ E + + GK ++DAR
Sbjct: 277 VRTV----------------PVFLAADS--PY---TERLLALSGATAGKAH---GASDAR 312
Query: 381 YFRERGLPAI-----GFSPMANTPILLH 403
Y E GL + GF+ + + LH
Sbjct: 313 YLGENGLTGVVWGAEGFNTLHSRDECLH 340
>pdb|2POK|A Chain A, Crystal Structure Of A M20 Family Metallo Peptidase From
Streptococcus Pneumoniae
pdb|2POK|B Chain B, Crystal Structure Of A M20 Family Metallo Peptidase From
Streptococcus Pneumoniae
Length = 481
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 77 PLILLKWPGSNPQLPSILLNSHTDVVPSEPSK-WSHHPFGAHLDSQGNIFARGSQDMKCV 135
P ++ + S P +++ +H D VP++ + W+ PF + G ++ RG D K
Sbjct: 93 PFVMAHFKSSRPDAKTLIFYNHYDTVPADGDQVWTEDPFTLSV-RNGFMYGRGVDDDKGH 151
Query: 136 GMQYLEAIRR 145
L A+R+
Sbjct: 152 ITARLSALRK 161
>pdb|3DLJ|A Chain A, Crystal Structure Of Human Carnosine Dipeptidase 1
pdb|3DLJ|B Chain B, Crystal Structure Of Human Carnosine Dipeptidase 1
Length = 485
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/137 (19%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 28 DSIIERFRAYLQI--DTSQPNPDY-----------TNASKFILAQAEALSLESQTLEFAK 74
D ++ + ++ I D+ QP P + + + + A+ ++ + Q L +
Sbjct: 25 DEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRLGARVASVDMGPQQLPDGQ 84
Query: 75 NKPL--ILLKWPGSNPQLPSILLNSHTDVVPSEPSK-WSHHPFGAHLDSQGNIFARGSQD 131
+ P+ ++L GS+P ++ H DV P++ W P+ + G ++ RG+ D
Sbjct: 85 SLPIPPVILAELGSDPTKGTVCFYGHLDVQPADRGDGWLTDPY-VLTEVDGKLYGRGATD 143
Query: 132 MKCVGMQYLEAIRRLKA 148
K + ++ A+ +A
Sbjct: 144 NKGPVLAWINAVSAFRA 160
>pdb|3B3T|A Chain A, Crystal Structure Of The D118n Mutant Of The
Aminopeptidase From Vibrio Proteolyticus
Length = 291
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 20/142 (14%)
Query: 52 ASKFILAQAEALSLE------SQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105
AS +I ++ +ALS Q N+ +++ GS I++ H D
Sbjct: 45 ASDWIASEWQALSASLPNASVKQVSHSGYNQKSVVMTITGSEAPDEWIVIGGHLDST--- 101
Query: 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDE 165
G+H + Q A G+ D E IR L + FQP RS+ E
Sbjct: 102 --------IGSHTNEQS--VAPGADDNASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAE 151
Query: 166 EIGGHDGAEKFADSHVFNSLNV 187
E+G G++ A+ + NV
Sbjct: 152 EVGLR-GSQDLANQYKSEGKNV 172
>pdb|1RTQ|A Chain A, The 0.95 Angstrom Resolution Crystal Structure Of The
Aminopeptidase From Aeromonas Proteolytica
pdb|1TXR|A Chain A, X-Ray Crystal Structure Of Bestatin Bound To Aap
pdb|1XRY|A Chain A, Crystal Structure Of Aeromonas Proteolytica Aminopeptidase
In Complex With Bestatin
pdb|2DEA|A Chain A, Crystal Structure Of The Aminopeptidase Of Aeromonas
Proteolytica At Ph 4.7
pdb|2NYQ|A Chain A, Structure Of Vibrio Proteolyticus Aminopeptidase With A
Bound Trp Fragment Of Dlwcf
pdb|3FH4|A Chain A, Crystal Structure Of Recombinant Vibrio Proteolyticus
Aminopeptidase
pdb|3VH9|A Chain A, Crystal Structure Of Aeromonas Proteolytica Aminopeptidase
Complexed With 8-Quinolinol
Length = 299
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 20/142 (14%)
Query: 52 ASKFILAQAEALSLE------SQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105
AS +I ++ +ALS Q N+ +++ GS I++ H D
Sbjct: 45 ASDWIASEWQALSASLPNASVKQVSHSGYNQKSVVMTITGSEAPDEWIVIGGHLDST--- 101
Query: 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDE 165
G+H + Q A G+ D E IR L + FQP RS+ E
Sbjct: 102 --------IGSHTNEQS--VAPGADDDASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAE 151
Query: 166 EIGGHDGAEKFADSHVFNSLNV 187
E+G G++ A+ + NV
Sbjct: 152 EVGLR-GSQDLANQYKSEGKNV 172
>pdb|1IGB|A Chain A, Aeromonas Proteolytica Aminopeptidase Complexed With The
Inhibitor Para-Iodo-D-Phenylalanine Hydroxamate
Length = 291
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 20/142 (14%)
Query: 52 ASKFILAQAEALSLE------SQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105
AS +I ++ +ALS Q N+ +++ GS I++ H D
Sbjct: 45 ASDWIASEWQALSASLPNASVKQVSHSGYNQKSVVMTITGSEAPDEWIVIGGHLDST--- 101
Query: 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDE 165
G+H + Q A G+ D E IR L + FQP RS+ E
Sbjct: 102 --------IGSHTNEQS--VAPGADDDASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAE 151
Query: 166 EIGGHDGAEKFADSHVFNSLNV 187
E+G G++ A+ + NV
Sbjct: 152 EVGLR-GSQDLANQYKSEGKNV 172
>pdb|2QVP|A Chain A, Crystal Structure Of A Putative Metallopeptidase
(Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A
Resolution
pdb|2QVP|B Chain B, Crystal Structure Of A Putative Metallopeptidase
(Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A
Resolution
pdb|2QVP|C Chain C, Crystal Structure Of A Putative Metallopeptidase
(Sama_0725) From Shewanella Amazonensis Sb2b At 2.00 A
Resolution
Length = 275
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 18/67 (26%)
Query: 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQL 90
I+RF + L I+T E L L S+ L A + PL LL+ PG L
Sbjct: 24 IQRFYSLLAIET------------------ERLGLGSKILGQAGHHPLYLLQSPGQKAGL 65
Query: 91 PSILLNS 97
P++L+++
Sbjct: 66 PNLLISA 72
>pdb|3B35|A Chain A, Crystal Structure Of The M180a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus
pdb|3B3C|A Chain A, Crystal Structure Of The M180a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine Phosphonic Acid
pdb|3B3S|A Chain A, Crystal Structure Of The M180a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine
Length = 291
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 20/142 (14%)
Query: 52 ASKFILAQAEALSLE------SQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105
AS +I ++ +ALS Q N+ +++ GS I++ H D
Sbjct: 45 ASDWIASEWQALSASLPNASVKQVSHSGYNQKSVVMTITGSEAPDEWIVIGGHLDST--- 101
Query: 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDE 165
G+H + Q A G+ D E IR L + FQP RS+ E
Sbjct: 102 --------IGSHTNEQS--VAPGADDDASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAE 151
Query: 166 EIGGHDGAEKFADSHVFNSLNV 187
E+G G++ A+ + NV
Sbjct: 152 EVGLR-GSQDLANQYKSEGKNV 172
>pdb|3B3V|A Chain A, Crystal Structure Of The S228a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus
pdb|3B3W|A Chain A, Crystal Structure Of The S228a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine
pdb|3B7I|A Chain A, Crystal Structure Of The S228a Mutant Of The
Aminopeptidase From Vibrio Proteolyticus In Complex With
Leucine Phosphonic Acid
Length = 291
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 20/142 (14%)
Query: 52 ASKFILAQAEALSLE------SQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105
AS +I ++ +ALS Q N+ +++ GS I++ H D
Sbjct: 45 ASDWIASEWQALSASLPNASVKQVSHSGYNQKSVVMTITGSEAPDEWIVIGGHLDST--- 101
Query: 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDE 165
G+H + Q A G+ D E IR L + FQP RS+ E
Sbjct: 102 --------IGSHTNEQS--VAPGADDDASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAE 151
Query: 166 EIGGHDGAEKFADSHVFNSLNV 187
E+G G++ A+ + NV
Sbjct: 152 EVGLR-GSQDLANQYKSEGKNV 172
>pdb|1CP6|A Chain A, 1-Butaneboronic Acid Binding To Aeromonas Proteolytica
Aminopeptidase
pdb|1FT7|A Chain A, Aap Complexed With L-Leucinephosphonic Acid
pdb|1LOK|A Chain A, The 1.20 Angstrom Resolution Crystal Structure Of The
Aminopeptidase From Aeromonas Proteolytica Complexed
With Tris: A Tale Of Buffer Inhibition
pdb|2PRQ|A Chain A, X-Ray Crystallographic Characterization Of The Co(Ii)-
Substituted Tris-Bound Form Of The Aminopeptidase From
Aeromonas Proteolytica
pdb|1AMP|A Chain A, Crystal Structure Of Aeromonas Proteolytica
Aminopeptidase: A Prototypical Member Of The
Co-Catalytic Zinc Enzyme Family
pdb|2IQ6|A Chain A, Crystal Structure Of The Aminopeptidase From Vibrio
Proteolyticus In Complexation With Leucyl-Leucyl-Leucine
Length = 291
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 20/142 (14%)
Query: 52 ASKFILAQAEALSLE------SQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105
AS +I ++ +ALS Q N+ +++ GS I++ H D
Sbjct: 45 ASDWIASEWQALSASLPNASVKQVSHSGYNQKSVVMTITGSEAPDEWIVIGGHLDST--- 101
Query: 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDE 165
G+H + Q A G+ D E IR L + FQP RS+ E
Sbjct: 102 --------IGSHTNEQS--VAPGADDDASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAE 151
Query: 166 EIGGHDGAEKFADSHVFNSLNV 187
E+G G++ A+ + NV
Sbjct: 152 EVGLR-GSQDLANQYKSEGKNV 172
>pdb|2Z0Q|A Chain A, Crystal Structure Of Dh-Ph Domain Of Rhogef3(Xpln)
Length = 352
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 340 RPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGL 387
R IL T + NP LEEA+ G + + ++ RY++ER L
Sbjct: 168 REILRHTPNDNPDQQHLEEAINIIQGIVAEINTKTGESECRYYKERLL 215
>pdb|3N16|A Chain A, Xena - Y183f
Length = 363
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 17/143 (11%)
Query: 114 FGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYL-SFVPDEEIGGHDG 172
FGAHL D+ V +++A RR + +GF+ + + F+ H
Sbjct: 137 FGAHLPKVPREMTL--DDIARVKQDFVDAARRARDAGFEWIELHFAHGFLGQSFFSEH-- 192
Query: 173 AEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNS 232
+ K D++ + N L E LA+ R + E P + AR G YD
Sbjct: 193 SNKRTDAYGGSFDNRSRFLLETLAAV----REVWPENLP----LTAR----FGVLEYDGR 240
Query: 233 AMENLFKSIESVRRFRASQFDLV 255
+ L +SIE RRF+A DL+
Sbjct: 241 DEQTLEESIELARRFKAGGLDLL 263
>pdb|1CG2|A Chain A, Carboxypeptidase G2
pdb|1CG2|B Chain B, Carboxypeptidase G2
pdb|1CG2|C Chain C, Carboxypeptidase G2
pdb|1CG2|D Chain D, Carboxypeptidase G2
Length = 393
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 19/121 (15%)
Query: 277 TPSPNGFVMNLQPSEAEAGFDIRVPPTTD----AESLERRIVEEWAPASRNMTFEFKQRA 332
T + G V N+ P+ A D+R D ++LE R ++ P + +
Sbjct: 244 TIAKAGNVSNIIPASATLNADVRYARNEDFDAAMKTLEERAQQKKLPEADVKVIVTR--- 300
Query: 333 SLHDKFGRPILTATDSSNPWWNLLEEAV---RKANGKLGKPEIFPASTDARYFRERGLPA 389
GRP A + L+++AV ++A G LG E TDA Y G P
Sbjct: 301 ------GRPAFNAGEGGK---KLVDKAVAYYKEAGGTLGVEERTGGGTDAAYAALSGKPV 351
Query: 390 I 390
I
Sbjct: 352 I 352
>pdb|3L65|A Chain A, Xenobiotic Reductase A - C25a Mutant
pdb|3L66|A Chain A, Xenobiotic Reductase A - C25a Variant With Coumarin
Length = 363
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 57/145 (39%), Gaps = 21/145 (14%)
Query: 114 FGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173
FGAHL D+ V +++A RR + +GF+ + L F G+ G
Sbjct: 137 FGAHLPKVPREMTL--DDIARVKQDFVDAARRARDAGFEWIE---LHFA-----HGYLGQ 186
Query: 174 EKFADSHVFNSLNVGIVLDEG---LASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYD 230
F++ + G D L T R + E P + AR G YD
Sbjct: 187 SFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLP----LTAR----FGVLEYD 238
Query: 231 NSAMENLFKSIESVRRFRASQFDLV 255
+ L +SIE RRF+A DL+
Sbjct: 239 GRDEQTLEESIELARRFKAGGLDLL 263
>pdb|3L67|A Chain A, Xenobiotic Reductase A - C25s Variant
pdb|3L68|A Chain A, Xenobiotic Reductase A - C25s Variant With Coumarin
Length = 363
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 57/145 (39%), Gaps = 21/145 (14%)
Query: 114 FGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173
FGAHL D+ V +++A RR + +GF+ + L F G+ G
Sbjct: 137 FGAHLPKVPREMTL--DDIARVKQDFVDAARRARDAGFEWIE---LHFA-----HGYLGQ 186
Query: 174 EKFADSHVFNSLNVGIVLDEG---LASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYD 230
F++ + G D L T R + E P + AR G YD
Sbjct: 187 SFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLP----LTAR----FGVLEYD 238
Query: 231 NSAMENLFKSIESVRRFRASQFDLV 255
+ L +SIE RRF+A DL+
Sbjct: 239 GRDEQTLEESIELARRFKAGGLDLL 263
>pdb|2H8X|A Chain A, Xenobiotic Reductase A-Oxidized
Length = 358
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 57/145 (39%), Gaps = 21/145 (14%)
Query: 114 FGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173
FGAHL D+ V +++A RR + +GF+ + L F G+ G
Sbjct: 135 FGAHLPKVPREMTL--DDIARVKQDFVDAARRARDAGFEWIE---LHFA-----HGYLGQ 184
Query: 174 EKFADSHVFNSLNVGIVLDEG---LASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYD 230
F++ + G D L T R + E P + AR G YD
Sbjct: 185 SFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLP----LTAR----FGVLEYD 236
Query: 231 NSAMENLFKSIESVRRFRASQFDLV 255
+ L +SIE RRF+A DL+
Sbjct: 237 GRDEQTLEESIELARRFKAGGLDLL 261
>pdb|2H8Z|A Chain A, Xenobiotic Reductase A In Complex With 8-Hydroxycoumarin
pdb|2H90|A Chain A, Xenobiotic Reductase A In Complex With Coumarin
Length = 359
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 57/145 (39%), Gaps = 21/145 (14%)
Query: 114 FGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173
FGAHL D+ V +++A RR + +GF+ + L F G+ G
Sbjct: 136 FGAHLPKVPREMTL--DDIARVKQDFVDAARRARDAGFEWIE---LHFA-----HGYLGQ 185
Query: 174 EKFADSHVFNSLNVGIVLDEG---LASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYD 230
F++ + G D L T R + E P + AR G YD
Sbjct: 186 SFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLP----LTAR----FGVLEYD 237
Query: 231 NSAMENLFKSIESVRRFRASQFDLV 255
+ L +SIE RRF+A DL+
Sbjct: 238 GRDEQTLEESIELARRFKAGGLDLL 262
>pdb|3L5L|A Chain A, Xenobiotic Reductase A - Oxidized
pdb|3L5M|A Chain A, Xenobiotic Reductase A - Coumarin Bound
pdb|3N19|B Chain B, Xena - Reduced
pdb|3N19|D Chain D, Xena - Reduced
Length = 363
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 57/145 (39%), Gaps = 21/145 (14%)
Query: 114 FGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173
FGAHL D+ V +++A RR + +GF+ + L F G+ G
Sbjct: 137 FGAHLPKVPREMTL--DDIARVKQDFVDAARRARDAGFEWIE---LHFA-----HGYLGQ 186
Query: 174 EKFADSHVFNSLNVGIVLDEG---LASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYD 230
F++ + G D L T R + E P + AR G YD
Sbjct: 187 SFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLP----LTAR----FGVLEYD 238
Query: 231 NSAMENLFKSIESVRRFRASQFDLV 255
+ L +SIE RRF+A DL+
Sbjct: 239 GRDEQTLEESIELARRFKAGGLDLL 263
>pdb|3N14|A Chain A, Xena - W358a
Length = 363
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 57/145 (39%), Gaps = 21/145 (14%)
Query: 114 FGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173
FGAHL D+ V +++A RR + +GF+ + L F G+ G
Sbjct: 137 FGAHLPKVPREMTL--DDIARVKQDFVDAARRARDAGFEWIE---LHFA-----HGYLGQ 186
Query: 174 EKFADSHVFNSLNVGIVLDEG---LASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYD 230
F++ + G D L T R + E P + AR G YD
Sbjct: 187 SFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLP----LTAR----FGVLEYD 238
Query: 231 NSAMENLFKSIESVRRFRASQFDLV 255
+ L +SIE RRF+A DL+
Sbjct: 239 GRDEQTLEESIELARRFKAGGLDLL 263
>pdb|2ANP|A Chain A, Functional Glutamate 151 To Histidine Mutant Of The
Aminopeptidase From Aeromonas Proteolytica
Length = 291
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 20/142 (14%)
Query: 52 ASKFILAQAEALSLE------SQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105
AS +I ++ +ALS Q N+ +++ GS I++ H D
Sbjct: 45 ASDWIASEWQALSASLPNASVKQVSHSGYNQKSVVMTITGSEAPDEWIVIGGHLDST--- 101
Query: 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDE 165
G+H + Q A G+ D E IR L + FQP RS+
Sbjct: 102 --------IGSHTNEQS--VAPGADDDASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAH 151
Query: 166 EIGGHDGAEKFADSHVFNSLNV 187
E+G G++ A+ + NV
Sbjct: 152 EVGLR-GSQDLANQYKSEGKNV 172
>pdb|1UAN|A Chain A, Crystal Structure Of The Conserved Protein Tt1542 From
Thermus Thermophilus Hb8
pdb|1UAN|B Chain B, Crystal Structure Of The Conserved Protein Tt1542 From
Thermus Thermophilus Hb8
Length = 227
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 46 NPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLN 96
+PD+T AS+ +A L LE + L +PG++P PS L+
Sbjct: 108 HPDHTAASRLAVAAVHLAGLRKAPLEGEPFRVERLFFYPGNHPFAPSFLVK 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,485,691
Number of Sequences: 62578
Number of extensions: 570181
Number of successful extensions: 1177
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1163
Number of HSP's gapped (non-prelim): 38
length of query: 444
length of database: 14,973,337
effective HSP length: 102
effective length of query: 342
effective length of database: 8,590,381
effective search space: 2937910302
effective search space used: 2937910302
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)