BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013369
(444 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 60.1 bits (144), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 9/129 (6%)
Query: 70 HGQTAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSIC 129
+G+T +H A G +E+V+ L + + +D PLH AA NG ++V++ L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGH-LEVVKLLLEAG 58
Query: 130 PESLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFN 189
+ K N T LHLA +N HLE ++L++ N K+++G T LHLA N
Sbjct: 59 ADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARN 111
Query: 190 KSIEIVKAL 198
+E+VK L
Sbjct: 112 GHLEVVKLL 120
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 17/109 (15%)
Query: 139 NQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKAL 198
N T LHLA +N HLE ++L++ N K+++G T LHLA N +E+VK L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVK-L 53
Query: 199 ALESSNSSSIMIRVNTLNKQGQTALEVCKANSEDSVFKEIGLILQEASA 247
LE+ VN +K G+T L + N V K +L EA A
Sbjct: 54 LLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVK----LLLEAGA 92
Score = 48.1 bits (113), Expect = 9e-06, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 40 PLLTACEYGNHQVAKEIASRWPKLAMIKNQHGQTAVHTVAERGDVEMVQFLGKQNPESCL 99
PL A G+ +V K + + K+++G+T +H A G +E+V+ L + +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VN 62
Query: 100 VEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVL 159
+D PLH AA NG ++V++ L+ + K N T LHLA +N HLE ++L
Sbjct: 63 AKDKNGRTPLHLAARNGH-LEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLL 120
Query: 160 VK 161
++
Sbjct: 121 LE 122
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 16/159 (10%)
Query: 78 VAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLT 137
AE G+ + V+ L +N D+ PLH AA NG +V++ L+S + K
Sbjct: 11 AAENGNKDRVKDL-IENGADVNASDSDGRTPLHHAAENGHK-EVVKLLISKGADVNAK-D 67
Query: 138 SNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKA 197
S+ T LH A +N H E ++L+ +K N K+ DG T LH A N E+VK
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLI------SKGADVNAKDSDGRTPLHHAAENGHKEVVKL 121
Query: 198 LALESSNSSSIMIRVNTLNKQGQTALEVCKANSEDSVFK 236
L + ++ VNT + G+T L++ + + + V K
Sbjct: 122 LISKGAD-------VNTSDSDGRTPLDLAREHGNEEVVK 153
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 10/158 (6%)
Query: 41 LLTACEYGNHQVAKEIASRWPKLAMIKNQHGQTAVHTVAERGDVEMVQFLGKQNPESCLV 100
L+ A E GN K++ + + G+T +H AE G E+V+ L + +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNA 65
Query: 101 EDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLV 160
+D+ PLH AA NG +V++ L+S + K S+ T LH A +N H E ++L+
Sbjct: 66 KDSDGRTPLHHAAENGHK-EVVKLLISKGADVNAK-DSDGRTPLHHAAENGHKEVVKLLI 123
Query: 161 KVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKAL 198
+K N + DG T L LA + + E+VK L
Sbjct: 124 ------SKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 4/132 (3%)
Query: 30 IRASSSSENNPLLTACEYGNHQVAKEIASRWPKLAMIKNQHGQTAVHTVAERGDVEMVQF 89
+ AS S PL A E G+ +V K + S+ + K+ G+T +H AE G E+V+
Sbjct: 30 VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKL 88
Query: 90 LGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVK 149
L + + +D+ PLH AA NG +V++ L+S + + S+ T L LA +
Sbjct: 89 LISKGAD-VNAKDSDGRTPLHHAAENGHK-EVVKLLISKGAD-VNTSDSDGRTPLDLARE 145
Query: 150 NSHLEAFQVLVK 161
+ + E ++L K
Sbjct: 146 HGNEEVVKLLEK 157
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 11 HVDEVKLLLSKIPKLSDDVIRASSSSENNPLLTACEYGNHQVAKEIASRWPKLAMIKNQH 70
H + VKLL+SK + A S PL A E G+ +V K + S+ + +
Sbjct: 82 HKEVVKLLISKGAD-----VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSD 135
Query: 71 GQTAVHTVAERGDVEMVQFLGKQ 93
G+T + E G+ E+V+ L KQ
Sbjct: 136 GRTPLDLAREHGNEEVVKLLEKQ 158
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 16/159 (10%)
Query: 78 VAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLT 137
AE G+ + V+ L +N D+ PLH AA NG +V++ L+S + K
Sbjct: 11 AAENGNKDRVKDL-LENGADVNASDSDGKTPLHLAAENGHK-EVVKLLLSQGADPNAK-D 67
Query: 138 SNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKA 197
S+ T LHLA +N H E ++L+ N K+ DG T LHLA N E+VK
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGAD------PNAKDSDGKTPLHLAAENGHKEVVKL 121
Query: 198 LALESSNSSSIMIRVNTLNKQGQTALEVCKANSEDSVFK 236
L + ++ NT + G+T L++ + + + V K
Sbjct: 122 LLSQGADP-------NTSDSDGRTPLDLAREHGNEEVVK 153
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 41 LLTACEYGNHQVAKEIASRWPKLAMIKNQHGQTAVHTVAERGDVEMVQFLGKQNPESCLV 100
L+ A E GN K++ + + G+T +H AE G E+V+ L Q +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN-A 65
Query: 101 EDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLV 160
+D+ PLH AA NG +V++ L+S + K S+ T LHLA +N H E ++L+
Sbjct: 66 KDSDGKTPLHLAAENGHK-EVVKLLLSQGADPNAK-DSDGKTPLHLAAENGHKEVVKLLL 123
Query: 161 KVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKAL 198
N + DG T L LA + + E+VK L
Sbjct: 124 SQGAD------PNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
Query: 30 IRASSSSENNPLLTACEYGNHQVAKEIASRWPKLAMIKNQHGQTAVHTVAERGDVEMVQF 89
+ AS S PL A E G+ +V K + S+ K+ G+T +H AE G E+V+
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKL 88
Query: 90 LGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQD--TALHLA 147
L Q + +D+ PLH AA NG +V++ L+S + + TS+ D T L LA
Sbjct: 89 LLSQGADPN-AKDSDGKTPLHLAAENGHK-EVVKLLLS---QGADPNTSDSDGRTPLDLA 143
Query: 148 VKNSHLEAFQVLVK 161
++ + E ++L K
Sbjct: 144 REHGNEEVVKLLEK 157
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 16/159 (10%)
Query: 78 VAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLT 137
AE G+ + V+ L +N D+ PLH AA NG ++++ L+S + K
Sbjct: 11 AAENGNKDRVKDL-LENGADPNASDSDGRTPLHYAAENGHK-EIVKLLLSKGADPNAK-D 67
Query: 138 SNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKA 197
S+ T LH A +N H E ++L+ +K N K+ DG T LH A N EIVK
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLL------SKGADPNAKDSDGRTPLHYAAENGHKEIVKL 121
Query: 198 LALESSNSSSIMIRVNTLNKQGQTALEVCKANSEDSVFK 236
L + ++ NT + G+T L++ + + + + K
Sbjct: 122 LLSKGADP-------NTSDSDGRTPLDLAREHGNEEIVK 153
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 41 LLTACEYGNHQVAKEIASRWPKLAMIKNQHGQTAVHTVAERGDVEMVQFLGKQNPESCLV 100
L+ A E GN K++ + G+T +H AE G E+V+ L + +
Sbjct: 8 LIEAAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN-A 65
Query: 101 EDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLV 160
+D+ PLH AA NG ++++ L+S + K S+ T LH A +N H E ++L+
Sbjct: 66 KDSDGRTPLHYAAENGHK-EIVKLLLSKGADPNAK-DSDGRTPLHYAAENGHKEIVKLLL 123
Query: 161 KVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKAL 198
+K N + DG T L LA + + EIVK L
Sbjct: 124 ------SKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 32 ASSSSENNPLLTACEYGNHQVAKEIASRWPKLAMIKNQHGQTAVHTVAERGDVEMVQFLG 91
AS S PL A E G+ ++ K + S+ K+ G+T +H AE G E+V+ L
Sbjct: 32 ASDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLL 90
Query: 92 KQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQD--TALHLAVK 149
+ + +D+ PLH AA NG ++++ L+S + + TS+ D T L LA +
Sbjct: 91 SKGADPN-AKDSDGRTPLHYAAENGHK-EIVKLLLS---KGADPNTSDSDGRTPLDLARE 145
Query: 150 NSHLEAFQVLVK 161
+ + E ++L K
Sbjct: 146 HGNEEIVKLLEK 157
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 11 HVDEVKLLLSKIPKLSDDVIRASSSSENNPLLTACEYGNHQVAKEIASRWPKLAMIKNQH 70
H + VKLLLSK + A S PL A E G+ ++ K + S+ +
Sbjct: 82 HKEIVKLLLSKGADPN-----AKDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNTSDSD 135
Query: 71 GQTAVHTVAERGDVEMVQFLGKQ 93
G+T + E G+ E+V+ L KQ
Sbjct: 136 GRTPLDLAREHGNEEIVKLLEKQ 158
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 16/159 (10%)
Query: 78 VAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLT 137
AE G+ + V+ L +N D+ PLH AA G ++++ L+S + K
Sbjct: 11 AAENGNKDRVKDL-IENGADVNASDSDGRTPLHYAAKEGHK-EIVKLLISKGADVNAK-D 67
Query: 138 SNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKA 197
S+ T LH A K H E ++L+ +K N K+ DG T LH A EIVK
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLI------SKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 198 LALESSNSSSIMIRVNTLNKQGQTALEVCKANSEDSVFK 236
L + ++ VNT + G+T L++ + + + + K
Sbjct: 122 LISKGAD-------VNTSDSDGRTPLDLAREHGNEEIVK 153
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 10/158 (6%)
Query: 41 LLTACEYGNHQVAKEIASRWPKLAMIKNQHGQTAVHTVAERGDVEMVQFLGKQNPESCLV 100
L+ A E GN K++ + + G+T +H A+ G E+V+ L + +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNA-SDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNA 65
Query: 101 EDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLV 160
+D+ PLH AA G ++++ L+S + K S+ T LH A K H E ++L+
Sbjct: 66 KDSDGRTPLHYAAKEGHK-EIVKLLISKGADVNAK-DSDGRTPLHYAAKEGHKEIVKLLI 123
Query: 161 KVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKAL 198
+K N + DG T L LA + + EIVK L
Sbjct: 124 ------SKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 8 KDDHVDEVKLLLSKIPKLSDDVIRASSSSENNPLLTACEYGNHQVAKEIASRWPKLAMIK 67
K+ H + VKLL+SK + A S PL A + G+ ++ K + S+ +
Sbjct: 79 KEGHKEIVKLLISKGAD-----VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NTS 132
Query: 68 NQHGQTAVHTVAERGDVEMVQFLGKQ 93
+ G+T + E G+ E+V+ L KQ
Sbjct: 133 DSDGRTPLDLAREHGNEEIVKLLEKQ 158
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 102 DNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLVK 161
D L PLH AA G ++++ L+ + + + T LHLA N HLE +VL+K
Sbjct: 44 DWLGHTPLHLAAKTGH-LEIVEVLLKYGAD-VNAWDNYGATPLHLAADNGHLEIVEVLLK 101
Query: 162 VSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVNTLNKQGQT 221
H + N K+ +G T LHLA ++ +EIV+ L ++ VN +K G+T
Sbjct: 102 ----HGAD--VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD-------VNAQDKFGKT 148
Query: 222 ALEVCKANSEDSV 234
A ++ N + +
Sbjct: 149 AFDISIDNGNEDL 161
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 137 TSNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVK 196
+ + +T LH A KN H E +V K+ +K N +++DGNT LHLA N EIVK
Sbjct: 6 SKDGNTPLHNAAKNGHAE------EVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVK 59
Query: 197 ALALESSNSSSIMIRVNTLNKQGQTALEVCKANSEDSVFKEIGLILQEASARS 249
L + ++ VN +K G T + K N + K + + +ARS
Sbjct: 60 LLLAKGAD-------VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 108 PLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHN 167
PLH AA NG + +V + L + + + +T LHLA KN H E ++L+
Sbjct: 12 PLHNAAKNGHAEEVKKLLSK--GADVNARSKDGNTPLHLAAKNGHAEIVKLLLA------ 63
Query: 168 KEHVFNWKNEDGNTVLHLATFNKSIEIVKAL 198
K N +++DGNT HLA N EIVK L
Sbjct: 64 KGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 35.8 bits (81), Expect = 0.050, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 174 WKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVNTLNKQGQTALEVCKANSEDS 233
W ++DGNT LH A N E VK L + ++ VN +K G T L + N
Sbjct: 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-------VNARSKDGNTPLHLAAKNGHAE 56
Query: 234 VFKEIGLILQEASARSPVQQSPQ 256
+ K + + +ARS +P+
Sbjct: 57 IVKLLLAKGADVNARSKDGNTPE 79
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 8 KDDHVDEVKLLLSKIPKLSDDVIRASSSSENNPLLTACEYGNHQVAKEIASRWPKLAMIK 67
K+ H +EVK LLSK + A S N PL A + G+ ++ K + ++ + +
Sbjct: 18 KNGHAEEVKKLLSKGAD-----VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA-R 71
Query: 68 NQHGQTAVHTVAERGDVEMVQFL 90
++ G T H + G E+V+ L
Sbjct: 72 SKDGNTPEHLAKKNGHHEIVKLL 94
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 9/148 (6%)
Query: 17 LLLSKIPKLS-DDVIRASSSSENNPLLTACEYGNHQVAKEIASR--WPKLAMIKNQHGQT 73
LLSK+ ++ DD S + P AC GN +V K + R P L I NQ G T
Sbjct: 54 FLLSKMENVNLDDYPDDSGWT---PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVT 109
Query: 74 AVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESL 133
+H + E+ QFL +N S ++D + IPLHRAA G S+ +I L + ++
Sbjct: 110 CLHLAVGKKWFEVSQFL-IENGASVRIKDKFNQIPLHRAASVG-SLKLIELLCGLGKSAV 167
Query: 134 EKLTSNQDTALHLAVKNSHLEAFQVLVK 161
T L A+ H +A +LV+
Sbjct: 168 NWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 18/190 (9%)
Query: 38 NNPLLTACEYGNHQVAKEIASRWPKLAMIKNQHGQTAVHTVAERGDVEMVQFLGKQNPES 97
N PL AC +E+ P L + K+Q G+ +H E+ FL +
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 98 CLVE--DNLSMIPLHRAAMNGQSVDVIRALVS--ICPESLEKLTSNQDTALHLAVKNSHL 153
L + D+ P H A G +++V+++L + P+ L K+T+ T LHLAV
Sbjct: 63 NLDDYPDDSGWTPFHIACSVG-NLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWF 120
Query: 154 EAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVN 213
E Q L++ + FN LH A S+++++ L ++ VN
Sbjct: 121 EVSQFLIENGASVRIKDKFN------QIPLHRAASVGSLKLIELLCGLGKSA------VN 168
Query: 214 TLNKQGQTAL 223
+KQG T L
Sbjct: 169 WQDKQGWTPL 178
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 17/109 (15%)
Query: 139 NQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKAL 198
N T LHLA +N HLE ++L++ N K+++G T LHLA N +E+VK L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVK-L 53
Query: 199 ALESSNSSSIMIRVNTLNKQGQTALEVCKANSEDSVFKEIGLILQEASA 247
LE+ VN +K G+T L + N V K +L EA A
Sbjct: 54 LLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVK----LLLEAGA 92
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 9/148 (6%)
Query: 17 LLLSKIPKLS-DDVIRASSSSENNPLLTACEYGNHQVAKEIASR--WPKLAMIKNQHGQT 73
LLSK+ ++ DD S + P AC GN +V K + R P L I NQ G T
Sbjct: 54 FLLSKMENVNLDDYPDDSGWT---PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVT 109
Query: 74 AVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESL 133
+H + E+ QFL +N S ++D + IPLHRAA G S+ +I L + ++
Sbjct: 110 CLHLAVGKKWFEVSQFL-IENGASVRIKDKFNQIPLHRAASVG-SLKLIELLCGLGKSAV 167
Query: 134 EKLTSNQDTALHLAVKNSHLEAFQVLVK 161
T L A+ H +A +LV+
Sbjct: 168 NWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 18/190 (9%)
Query: 38 NNPLLTACEYGNHQVAKEIASRWPKLAMIKNQHGQTAVHTVAERGDVEMVQFLGKQNPES 97
N PL AC +E+ P L + K+Q G+ +H E+ FL +
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 98 CLVE--DNLSMIPLHRAAMNGQSVDVIRALVS--ICPESLEKLTSNQDTALHLAVKNSHL 153
L + D+ P H A G +++V+++L + P+ L K+T+ T LHLAV
Sbjct: 63 NLDDYPDDSGWTPFHIACSVG-NLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWF 120
Query: 154 EAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVN 213
E Q L++ + FN LH A S+++++ L ++ VN
Sbjct: 121 EVSQFLIENGASVRIKDKFN------QIPLHRAASVGSLKLIELLCGLGKSA------VN 168
Query: 214 TLNKQGQTAL 223
+KQG T L
Sbjct: 169 WQDKQGWTPL 178
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 102 DNLSMIPLHRAAMNGQSVDVIRALVSICPE-SLEKLTSNQDTALHLAVKNSHLEAFQVLV 160
DN PLH AA NG ++++ L+ + + LT T LHLA HLE +VL+
Sbjct: 44 DNDGYTPLHLAASNGH-LEIVEVLLKNGADVNASDLTGI--TPLHLAAATGHLEIVEVLL 100
Query: 161 KVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVNTLNKQGQ 220
K H + N + DG+T LHLA +EIV+ L ++ VN +K G+
Sbjct: 101 K----HGAD--VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD-------VNAQDKFGK 147
Query: 221 TALEVCKANSEDSV 234
TA ++ N + +
Sbjct: 148 TAFDISIDNGNEDL 161
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 41 LLTACEYGNHQVAKEIASRWPKLAMIKNQHGQTAVHTVAERGDVEMVQFLGKQNPESCLV 100
LL A G + + + + N G T +H A G +E+V+ L K N
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDND-GYTPLHLAASNGHLEIVEVLLK-NGADVNA 75
Query: 101 EDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLV 160
D + PLH AA G ++++ L+ + + ++ T LHLA K HLE +VL+
Sbjct: 76 SDLTGITPLHLAAATGH-LEIVEVLLKHGAD-VNAYDNDGHTPLHLAAKYGHLEIVEVLL 133
Query: 161 K 161
K
Sbjct: 134 K 134
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 9/148 (6%)
Query: 17 LLLSKIPKLS-DDVIRASSSSENNPLLTACEYGNHQVAKEIASR--WPKLAMIKNQHGQT 73
LLSK+ ++ DD S + P AC GN +V K + R P L I NQ G T
Sbjct: 54 FLLSKMENVNLDDYPDDSGWT---PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVT 109
Query: 74 AVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESL 133
+H + E+ QFL +N S ++D + IPLHRAA G S+ +I L + ++
Sbjct: 110 CLHLAVGKKWFEVSQFL-IENGASVRIKDKFNQIPLHRAASVG-SLKLIELLCGLGKSAV 167
Query: 134 EKLTSNQDTALHLAVKNSHLEAFQVLVK 161
T L A+ H +A +LV+
Sbjct: 168 NWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 18/190 (9%)
Query: 38 NNPLLTACEYGNHQVAKEIASRWPKLAMIKNQHGQTAVHTVAERGDVEMVQFLGKQNPES 97
N PL AC +E+ P L + K+Q G+ +H E+ FL +
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 98 CLVE--DNLSMIPLHRAAMNGQSVDVIRALVS--ICPESLEKLTSNQDTALHLAVKNSHL 153
L + D+ P H A G +++V+++L + P+ L K+T+ T LHLAV
Sbjct: 63 NLDDYPDDSGWTPFHIACSVG-NLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWF 120
Query: 154 EAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVN 213
E Q L++ + FN LH A S+++++ L ++ VN
Sbjct: 121 EVSQFLIENGASVRIKDKFN------QIPLHRAASVGSLKLIELLCGLGKSA------VN 168
Query: 214 TLNKQGQTAL 223
+KQG T L
Sbjct: 169 WQDKQGWTPL 178
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 21/154 (13%)
Query: 94 NPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHL 153
N +D PLH AA G ++++ L+ + K T LHLA + HL
Sbjct: 24 NGADVNAKDKDGYTPLHLAAREGH-LEIVEVLLKAGADVNAKDKDGY-TPLHLAAREGHL 81
Query: 154 EAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVN 213
E +VL+K N K++DG T LHLA +EIV+ L ++ VN
Sbjct: 82 EIVEVLLKAGAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-------VN 128
Query: 214 TLNKQGQTALEVC-KANSEDSVFKEIGLILQEAS 246
+K G+T ++ + ED I +LQ+A+
Sbjct: 129 AQDKFGKTPFDLAIREGHED-----IAEVLQKAA 157
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 67 KNQHGQTAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALV 126
K++ G T +H A G +E+V+ L K + +D PLH AA G ++++ L+
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGH-LEIVEVLL 88
Query: 127 SICPESLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFN 173
+ K T LHLA + HLE +VL+K N + F
Sbjct: 89 KAGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 134
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 15/141 (10%)
Query: 94 NPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHL 153
N ED PLH AA G ++++ L+ + + L + T LHLA K HL
Sbjct: 36 NGADVNAEDTYGDTPLHLAARVGH-LEIVEVLLKNGAD-VNALDFSGSTPLHLAAKRGHL 93
Query: 154 EAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVN 213
E +VL+K N + G+T LHLA +EIV+ L ++ VN
Sbjct: 94 EIVEVLLKYGADVNADDTI------GSTPLHLAADTGHLEIVEVLLKYGAD-------VN 140
Query: 214 TLNKQGQTALEVCKANSEDSV 234
+K G+TA ++ N + +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDL 161
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 70/151 (46%), Gaps = 17/151 (11%)
Query: 13 DEVKLLLSKIPKLSDDVIRASSSSENNPLLTACEYGNHQVAKEIASRWPKLAMIKNQHGQ 72
DEV++L++ + A + + PL A G+ ++ + + + + + G
Sbjct: 28 DEVRILMANGAD-----VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL-DFSGS 81
Query: 73 TAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPES 132
T +H A+RG +E+V+ L K + +D + PLH AA G ++++ L+ +
Sbjct: 82 TPLHLAAKRGHLEIVEVLLKYGAD-VNADDTIGSTPLHLAADTGH-LEIVEVLLKYGAD- 138
Query: 133 LEKLTSNQD----TALHLAVKNSHLEAFQVL 159
+ QD TA +++ N + + ++L
Sbjct: 139 ----VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Query: 67 KNQHGQTAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALV 126
K++ G T +H A G +E+V+ L K + +D PLH AA G ++++ L+
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGH-LEIVEVLL 88
Query: 127 SICPESLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLA 186
+ K T LHLA + HLE +VL+K N + F G T LA
Sbjct: 89 KAGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGADVNAQDKF------GKTPFDLA 141
Query: 187 TFNKSIEIVKAL 198
N + +I + L
Sbjct: 142 IDNGNEDIAEVL 153
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 173 NWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVNTLNKQGQTALEVC 226
N K++DG T LHLA +EIV+ L ++ VN +K G T L +
Sbjct: 29 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-------VNAKDKDGYTPLHLA 75
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 15/135 (11%)
Query: 102 DNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLVK 161
DN + PLH AA++G ++++ L+ + ++ T LHLA HLE +VL+K
Sbjct: 44 DNTGLTPLHLAAVSGH-LEIVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLLK 101
Query: 162 VSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVNTLNKQGQT 221
N F+ G+T LHLA +EIV+ L ++ VN +K G+T
Sbjct: 102 YGADVN---AFDMT---GSTPLHLAADEGHLEIVEVLLKYGAD-------VNAQDKFGKT 148
Query: 222 ALEVCKANSEDSVFK 236
A ++ N + + K
Sbjct: 149 AFDISIDNGNEDLAK 163
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 10/164 (6%)
Query: 34 SSSENNPLLTACEYGNHQVAKEIASRWPKLAMIKNQHGQTAVHTVAERGDVEMVQFLGKQ 93
S LL A G + + + + + N G T +H A G +E+V+ L K
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILIANGADVNAVDNT-GLTPLHLAAVSGHLEIVEVLLKH 69
Query: 94 NPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHL 153
+ D PLH AAM G ++++ L+ + + T LHLA HL
Sbjct: 70 GAD-VDAADVYGFTPLHLAAMTGH-LEIVEVLLKYGAD-VNAFDMTGSTPLHLAADEGHL 126
Query: 154 EAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKA 197
E +VL+K N + F G T ++ N + ++ K+
Sbjct: 127 EIVEVLLKYGADVNAQDKF------GKTAFDISIDNGNEDLAKS 164
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 16/148 (10%)
Query: 79 AERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTS 138
A G + V+ L + +DN + PLH AA NGQ ++++ L+ + + S
Sbjct: 14 AAAGQDDEVRILMANGADVNATDDN-GLTPLHLAAANGQ-LEIVEVLLKNGAD-VNASDS 70
Query: 139 NQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKAL 198
T LHLA + HLE +VL+K N W T LHLA + +EIV+ L
Sbjct: 71 AGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGW------TPLHLAALSGQLEIVEVL 124
Query: 199 ALESSNSSSIMIRVNTLNKQGQTALEVC 226
++ VN + G TA ++
Sbjct: 125 LKHGAD-------VNAQDALGLTAFDIS 145
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 108 PLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHN 167
PLH AA G VD+ LV +++ + +Q T L A +N+HLEA + L+K +
Sbjct: 14 PLHAAAEAGH-VDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-- 69
Query: 168 KEHVFNWKNEDGNTVLHLATFNKSIEIVKAL 198
+ K+ +G+T LHLA E+V+ L
Sbjct: 70 ----VDPKDAEGSTCLHLAAKKGHYEVVQYL 96
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 24/206 (11%)
Query: 30 IRASSSSENNPLLTACEYGNHQVAKEIASRWPKLAMIKNQHGQTAVHTVAERGDVEMVQF 89
I S + PL+ A E NH A + + L K+ G T +H A++G E+VQ+
Sbjct: 37 IDTCSEDQRTPLMEAAE-NNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQY 95
Query: 90 LGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVK 149
L +D+ P+ A + VD+++ L+S + + ++ LH A
Sbjct: 96 LLSNGQMDVNCQDDGGWTPM-IWATEYKHVDLVKLLLSK-GSDINIRDNEENICLHWA-- 151
Query: 150 NSHLEAFQVLVKVSKI----HNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALESSNS 205
AF V +++I H N G++ LH+A + V L S
Sbjct: 152 -----AFSGCVDIAEILLAAKCDLHAVNIH---GDSPLHIAARENRYDCV---VLFLSRD 200
Query: 206 SSIMIRVNTLNKQGQTALEVCKANSE 231
S + ++ NK+G+T L+ NS+
Sbjct: 201 SDVTLK----NKEGETPLQCASLNSQ 222
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 68 NQHGQTAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVS 127
N G+T +H + +GD+ V++L QN V+D+ PLH A +G + V+ L+
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYL-LQNGSDPNVKDHAGWTPLHEACNHGH-LKVVELLLQ 64
Query: 128 ICPESLEKLTSNQ-DTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNED 178
++L T Q D+ LH A KN H++ ++L+ N ++F + D
Sbjct: 65 H--KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVD 114
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 15/141 (10%)
Query: 94 NPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHL 153
N D+ PLH AA G +++ L+ + + T T LHLA N HL
Sbjct: 36 NGADVNAHDDQGSTPLHLAAWIGHP-EIVEVLLKHGADVNARDTDGW-TPLHLAADNGHL 93
Query: 154 EAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVN 213
E +VL+K N + + G T LHLA +EIV+ L ++ VN
Sbjct: 94 EIVEVLLKYGADVNAQDAY------GLTPLHLAADRGHLEIVEVLLKHGAD-------VN 140
Query: 214 TLNKQGQTALEVCKANSEDSV 234
+K G+TA ++ N + +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDL 161
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 17/104 (16%)
Query: 141 DTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALAL 200
+T LHLA HLE +VL+K H + N + DG+T LHLA +EIV+ L
Sbjct: 48 NTPLHLAADYDHLEIVEVLLK----HGAD--VNAHDNDGSTPLHLAALFGHLEIVEVLLK 101
Query: 201 ESSNSSSIMIRVNTLNKQGQTALEVCKANSEDSVFKEIGLILQE 244
++ VN +K G+TA ++ S D+ +++ ILQ+
Sbjct: 102 HGAD-------VNAQDKFGKTAFDI----SIDNGNEDLAEILQK 134
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 19/143 (13%)
Query: 94 NPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPE--SLEKLTSNQDTALHLAVKNS 151
N ED+ PLH AA+ G ++++ L+ + + +K+ DT LHLA
Sbjct: 36 NGADVNAEDDSGKTPLHLAAIKGH-LEIVEVLLKHGADVNAADKMG---DTPLHLAALYG 91
Query: 152 HLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIR 211
HLE +VL+K N + + T LHLA +EIV+ L ++
Sbjct: 92 HLEIVEVLLKNGADVNATDTYGF------TPLHLAADAGHLEIVEVLLKYGAD------- 138
Query: 212 VNTLNKQGQTALEVCKANSEDSV 234
VN +K G+TA ++ N + +
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDL 161
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 19/136 (13%)
Query: 109 LHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNK 168
L AA GQ D +R L++ + + L + T LHLA + HLE +VL+K N
Sbjct: 18 LLEAARAGQD-DEVRILMANGAD-VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNA 75
Query: 169 EHVFNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVNTLNKQGQTALEVCKA 228
E F G T LHLA +EIV+ L ++ VN +K G+TA ++
Sbjct: 76 EDNF------GITPLHLAAIRGHLEIVEVLLKHGAD-------VNAQDKFGKTAFDI--- 119
Query: 229 NSEDSVFKEIGLILQE 244
S D+ +++ ILQ+
Sbjct: 120 -SIDNGNEDLAEILQK 134
Score = 35.8 bits (81), Expect = 0.053, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 68 NQHGQTAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVS 127
++ G T +H A+ G +E+V+ L K + EDN + PLH AA+ G ++++ L+
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGAD-VNAEDNFGITPLHLAAIRGH-LEIVEVLLK 101
Query: 128 ICPESLEKLTSNQD----TALHLAVKNSHLEAFQVLVKVS 163
+ + QD TA +++ N + + ++L K++
Sbjct: 102 HGAD-----VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Query: 102 DNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLVK 161
D+ PLH AA G ++++ L+ + + + +N T LHLA HLE +VL+K
Sbjct: 32 DHYGRTPLHMAAAVGH-LEIVEVLLRNGAD-VNAVDTNGTTPLHLAASLGHLEIVEVLLK 89
Query: 162 VSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVNTLNKQGQT 221
N K+ G T L+LA + +EIV+ L ++ VN +K G+T
Sbjct: 90 YGAD------VNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD-------VNAQDKFGKT 136
Query: 222 ALEVC 226
A ++
Sbjct: 137 AFDIS 141
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 88/208 (42%), Gaps = 45/208 (21%)
Query: 63 LAMIKNQHGQTAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVI 122
LA +Q +TA+H G E+V+FL Q +D+ PLH AA G+ +++
Sbjct: 33 LATRTDQDSRTALHWACSAGHTEIVEFL-LQLGVPVNDKDDAGWSPLHIAASAGRD-EIV 90
Query: 123 RALVSICPESLEKLTSNQDTALHLAV-KNSHLEAFQVLVKVSKIHNKEHV---------- 171
+AL+ + + + N T LH A KN H A +L + K+H
Sbjct: 91 KALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAA 149
Query: 172 ----------------FNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVNTL 215
N ++ +GNT LHLA + +E K L S +SI I
Sbjct: 150 KGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV---SQGASIYIE---- 202
Query: 216 NKQGQTALEVCKANSEDSVFKEIGLILQ 243
NK+ +T L+V K +GLIL+
Sbjct: 203 NKEEKTPLQVAKGG--------LGLILK 222
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 88/208 (42%), Gaps = 45/208 (21%)
Query: 63 LAMIKNQHGQTAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVI 122
LA +Q +TA+H G E+V+FL Q +D+ PLH AA G+ +++
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFL-LQLGVPVNDKDDAGWSPLHIAASAGRD-EIV 89
Query: 123 RALVSICPESLEKLTSNQDTALHLAV-KNSHLEAFQVLVKVSKIHNKEHV---------- 171
+AL+ + + + N T LH A KN H A +L + K+H
Sbjct: 90 KALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAA 148
Query: 172 ----------------FNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVNTL 215
N ++ +GNT LHLA + +E K L S +SI I
Sbjct: 149 KGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV---SQGASIYIE---- 201
Query: 216 NKQGQTALEVCKANSEDSVFKEIGLILQ 243
NK+ +T L+V K +GLIL+
Sbjct: 202 NKEEKTPLQVAKGG--------LGLILK 221
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 67 KNQHGQTAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALV 126
K++ G T +H A G +E+V+ L K + +D PLH AA G ++++ L+
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGH-LEIVEVLL 100
Query: 127 SICPESLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFN 173
+ K T LHLA + HLE +VL+K N + F
Sbjct: 101 KAGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 146
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 173 NWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVNTLNKQGQTALEVC 226
N K++DG T LHLA +EIV+ L ++ VN +K G T L +
Sbjct: 41 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-------VNAKDKDGYTPLHLA 87
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 15/119 (12%)
Query: 81 RGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSI-CPESLEKLTSN 139
+GD+ + F ++NL PLH A + Q ++ AL+ C L N
Sbjct: 29 KGDLAFLNF-----------QNNLQQTPLHLAVITNQP-EIAEALLGAGCDPELRDFRGN 76
Query: 140 QDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKAL 198
T LHLA + L + VL + + + N +G+T LHLA+ + + IV+ L
Sbjct: 77 --TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 133
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 15/190 (7%)
Query: 14 EVKLLLSKIPKLSDDVIRASSSSENN-----PLLTACEYGNHQVAKEIASRWPKLAMIKN 68
V + +P + + + R +S + +N PL A G+ +VAK + K+ K
Sbjct: 19 HVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA-KA 77
Query: 69 QHGQTAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSI 128
+ QT +H A G MV+ L + N L PLH AA G V+ + AL+
Sbjct: 78 KDDQTPLHCAARIGHTNMVKLLLENNANPNLAT-TAGHTPLHIAAREGH-VETVLALLE- 134
Query: 129 CPESLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATF 188
S +T T LH+A K + ++L++ ++ N ++G T LH+A
Sbjct: 135 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLE------RDAHPNAAGKNGLTPLHVAVH 188
Query: 189 NKSIEIVKAL 198
+ +++IVK L
Sbjct: 189 HNNLDIVKLL 198
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 17/132 (12%)
Query: 71 GQTAVHTVAERGDVE----MVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALV 126
G T +H A++ VE ++Q+ G N ES + PLH AA G + V L
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ-----GVTPLHLAAQEGHAEMVALLLS 266
Query: 127 SICPESLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLA 186
+L + T LHL + H+ VL+K + + G T LH+A
Sbjct: 267 KQANGNLGNKSG--LTPLHLVAQEGHVPVADVLIKHGVM------VDATTRMGYTPLHVA 318
Query: 187 TFNKSIEIVKAL 198
+ +I++VK L
Sbjct: 319 SHYGNIKLVKFL 330
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 71 GQTAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICP 130
G T +H A G +E+V+ L K N +D+L + PLH AA G ++++ L+
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLK-NGADVNAKDSLGVTPLHLAARRGH-LEIVEVLLKNGA 104
Query: 131 ESLEKLTSNQDTALHLAVKNSHLEAFQVLVK 161
+ + S+ T LHLA K HLE +VL+K
Sbjct: 105 D-VNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 16/102 (15%)
Query: 142 TALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALE 201
T LHL V N HLE +VL+K + N W T LHLA + +EIV+ L
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVNASDKSGW------TPLHLAAYRGHLEIVEVLLKY 102
Query: 202 SSNSSSIMIRVNTLNKQGQTALEVCKANSEDSVFKEIGLILQ 243
++ VN ++ QG T L + +ED + + ++L+
Sbjct: 103 GAD-------VNAMDYQGYTPLHLA---AEDGHLEIVEVLLK 134
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 71 GQTAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICP 130
G T +H V G +E+++ L K + D PLH AA G ++++ L+
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPLHLAAYRGH-LEIVEVLLKYGA 104
Query: 131 ESLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNK 190
+ + + T LHLA ++ HLE +VL+K N + F G T ++ N
Sbjct: 105 D-VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKF------GKTAFDISIDNG 157
Query: 191 SIEIVKAL 198
+ ++ + L
Sbjct: 158 NEDLAEIL 165
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 15/119 (12%)
Query: 81 RGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSI-CPESLEKLTSN 139
+GD+ + F ++NL PLH A + Q ++ AL+ C L N
Sbjct: 32 KGDLAFLNF-----------QNNLQQTPLHLAVITNQP-EIAEALLGAGCDPELRDFRGN 79
Query: 140 QDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKAL 198
T LHLA + L + VL + + + N +G+T LHLA+ + + IV+ L
Sbjct: 80 --TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 136
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 20/208 (9%)
Query: 26 SDDVIRASSSSENNPLLTA--CEYGNHQVAKEIASRWPKLAMIKNQHGQTAVHTVAERGD 83
++D + A+ +PL C ++AK AS + +Q G + +H A G
Sbjct: 41 AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG--VNVTSQDGSSPLHVAALHGR 98
Query: 84 VEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTA 143
+++ L K + + +PLH A G V++ L+ + +K S +T
Sbjct: 99 ADLIPLLLKHGANA-GARNADQAVPLHLACQQGH-FQVVKCLLDSNAKPNKKDLSG-NTP 155
Query: 144 LHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALESS 203
L A H E +L++ H N N GNT LH A K + +V+ L L +
Sbjct: 156 LIYACSGGHHELVALLLQ----HGAS--INASNNKGNTALHEAVIEKHVFVVELLLLHGA 209
Query: 204 NSSSIMIRVNTLNKQGQTALEVCKANSE 231
+ V LNK+ +TA++ + NS+
Sbjct: 210 S-------VQVLNKRQRTAVDCAEQNSK 230
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 88/208 (42%), Gaps = 45/208 (21%)
Query: 63 LAMIKNQHGQTAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVI 122
LA +Q +TA+H G E+V+FL Q +D+ PLH AA G+ +++
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFL-LQLGVPVNDKDDAGWSPLHIAASAGRD-EIV 89
Query: 123 RALVSICPESLEKLTSNQDTALHLAV-KNSHLEAFQVLVKVSKIHNKEHV---------- 171
+AL+ + + + N T LH A KN H A +L + K+H
Sbjct: 90 KALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 172 ----------------FNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVNTL 215
N ++ +GNT LHLA + +E K L + +SI I
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV---TQGASIYIE---- 201
Query: 216 NKQGQTALEVCKANSEDSVFKEIGLILQ 243
NK+ +T L+V K +GLIL+
Sbjct: 202 NKEEKTPLQVAKGG--------LGLILK 221
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 87/208 (41%), Gaps = 45/208 (21%)
Query: 63 LAMIKNQHGQTAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVI 122
LA +Q +TA+H G E+V+FL Q +D+ PLH AA G +++
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFL-LQLGVPVNDKDDAGWSPLHIAASAGXD-EIV 89
Query: 123 RALVSICPESLEKLTSNQDTALHLAV-KNSHLEAFQVLVKVSKIHNKEHV---------- 171
+AL+ + + + N T LH A KN H A +L + K+H
Sbjct: 90 KALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 172 ----------------FNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVNTL 215
N ++ +GNT LHLA + +E K L + +SI I
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV---TQGASIYIE---- 201
Query: 216 NKQGQTALEVCKANSEDSVFKEIGLILQ 243
NK+ +T L+V K +GLIL+
Sbjct: 202 NKEEKTPLQVAKGG--------LGLILK 221
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 17/103 (16%)
Query: 142 TALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALE 201
T LHLA K HLE +VL+K N ++ G T LHLA +EIV+ L
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNARDIW------GRTPLHLAATVGHLEIVEVLLEY 102
Query: 202 SSNSSSIMIRVNTLNKQGQTALEVCKANSEDSVFKEIGLILQE 244
++ VN +K G+TA ++ S D+ +++ ILQ+
Sbjct: 103 GAD-------VNAQDKFGKTAFDI----SIDNGNEDLAEILQK 134
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 17/103 (16%)
Query: 142 TALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALE 201
T LHLA K HLE +VL+K N ++ G T LHLA +EIV+ L
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDIW------GRTPLHLAATVGHLEIVEVLLEY 102
Query: 202 SSNSSSIMIRVNTLNKQGQTALEVCKANSEDSVFKEIGLILQE 244
++ VN +K G+TA ++ S D+ +++ ILQ+
Sbjct: 103 GAD-------VNAQDKFGKTAFDI----SIDNGNEDLAEILQK 134
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 17/103 (16%)
Query: 142 TALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALE 201
T LHLA K HLE +VL+K H + N + G T LHLA +EIV+ L
Sbjct: 49 TPLHLAAKRGHLEIVEVLLK----HGAD--VNASDSWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 202 SSNSSSIMIRVNTLNKQGQTALEVCKANSEDSVFKEIGLILQE 244
++ VN +K G+TA ++ S D+ +++ ILQ+
Sbjct: 103 GAD-------VNAQDKFGKTAFDI----SIDNGNEDLAEILQK 134
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 94 NPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHL 153
N ED PLH AA NG ++++ L+ + + + T L LA HL
Sbjct: 36 NGADVNAEDASGWTPLHLAAFNGH-LEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHL 93
Query: 154 EAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVN 213
E +VL+K N V N + +G+T LHLA +EIV+ L ++ VN
Sbjct: 94 EIVEVLLK-----NGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-------VN 140
Query: 214 TLNKQGQTALEVCKANSEDSV 234
+K G+TA ++ N + +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDL 161
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 71 GQTAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICP 130
G T +H A G +E+V+ L K + V D+ M PL AA+ G ++++ L+
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRLAALFGH-LEIVEVLLKNGA 104
Query: 131 ESLEKLTSNQ---DTALHLAVKNSHLEAFQVLVK 161
+ + +N T LHLA HLE +VL+K
Sbjct: 105 D----VNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 17/103 (16%)
Query: 142 TALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALE 201
T LHLA HLE +VL+K N V N G T LHLA + +EIV+ L
Sbjct: 49 TPLHLAAMLGHLEIVEVLLK-----NGADV-NATGNTGRTPLHLAAWADHLEIVEVLLKH 102
Query: 202 SSNSSSIMIRVNTLNKQGQTALEVCKANSEDSVFKEIGLILQE 244
++ VN +K G+TA ++ S D+ +++ ILQ+
Sbjct: 103 GAD-------VNAQDKFGKTAFDI----SIDNGNEDLAEILQK 134
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 17/103 (16%)
Query: 142 TALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALE 201
T LHLA N HLE +VL+K N V N + G T LHL +EIV+ L
Sbjct: 49 TPLHLAAMNDHLEIVEVLLK-----NGADV-NAIDAIGETPLHLVAMYGHLEIVEVLLKH 102
Query: 202 SSNSSSIMIRVNTLNKQGQTALEVCKANSEDSVFKEIGLILQE 244
++ VN +K G+TA ++ S D+ +++ ILQ+
Sbjct: 103 GAD-------VNAQDKFGKTAFDI----SIDNGNEDLAEILQK 134
Score = 34.7 bits (78), Expect = 0.100, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 101 EDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLV 160
ED + + PLH AAMN ++++ L+ + + + + +T LHL HLE +VL+
Sbjct: 43 EDKVGLTPLHLAAMNDH-LEIVEVLLKNGAD-VNAIDAIGETPLHLVAMYGHLEIVEVLL 100
Query: 161 K 161
K
Sbjct: 101 K 101
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 71 GQTAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICP 130
G T +H A G +E+V+ L K N D L PLH AA G ++++ L+
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLK-NGADVNAYDTLGSTPLHLAAHFGH-LEIVEVLLKNGA 104
Query: 131 ESLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVF 172
+ K N T LHLA HLE +VL+K N + F
Sbjct: 105 DVNAK-DDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKF 145
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 102 DNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLVK 161
D+ PLH A G+S V+ L+ + + + DT LHLA + H + Q L++
Sbjct: 36 DDHGFSPLHWACREGRSA-VVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ 93
Query: 162 VSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVNTLNKQGQT 221
N NE GN LH A F ++ + L +N + + I NK G+
Sbjct: 94 YKAD------INAVNEHGNVPLHYACFWGQDQVAEDLV---ANGALVSI----CNKYGEM 140
Query: 222 ALEVCKA 228
++ KA
Sbjct: 141 PVDKAKA 147
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 15/133 (11%)
Query: 102 DNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLVK 161
D++ PLH AA G ++++ L+ + + S T LHLA HLE +VL+K
Sbjct: 44 DHVGWTPLHLAAYFGH-LEIVEVLLKNGAD-VNADDSLGVTPLHLAADRGHLEVVEVLLK 101
Query: 162 VSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVNTLNKQGQT 221
N V N + +G T LHLA +EIV+ L ++ VN +K G+T
Sbjct: 102 -----NGADV-NANDHNGFTPLHLAANIGHLEIVEVLLKHGAD-------VNAQDKFGKT 148
Query: 222 ALEVCKANSEDSV 234
A ++ N + +
Sbjct: 149 AFDISIDNGNEDL 161
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 71 GQTAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICP 130
G T +H A G +E+V+ L K N +D+L + PLH AA G ++V+ L+
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLK-NGADVNADDSLGVTPLHLAADRGH-LEVVEVLLKNGA 104
Query: 131 ESLEKLTSNQDTALHLAVKNSHLEAFQVLVK 161
+ + N T LHLA HLE +VL+K
Sbjct: 105 D-VNANDHNGFTPLHLAANIGHLEIVEVLLK 134
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 102 DNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLVK 161
D+ PLH A G+S V+ L+ + + + DT LHLA + H + Q L++
Sbjct: 31 DDHGFSPLHWACREGRSA-VVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ 88
Query: 162 VSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVNTLNKQGQT 221
N NE GN LH A F ++ + L +N + + I NK G+
Sbjct: 89 YKAD------INAVNEHGNVPLHYACFWGQDQVAEDLV---ANGALVSI----CNKYGEM 135
Query: 222 ALEVCKA 228
++ KA
Sbjct: 136 PVDKAKA 142
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 111 RAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEH 170
AA GQ D +R L++ + + + T LHLA + HLE +VL+K +
Sbjct: 20 EAARAGQD-DEVRILMANGAD-VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 171 VFNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVNTLNKQGQTALEVC 226
VF G T LHLA + +EIV+ L ++ VN ++ G T L +
Sbjct: 78 VF------GYTPLHLAAYWGHLEIVEVLLKNGAD-------VNAMDSDGMTPLHLA 120
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 71 GQTAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICP 130
G T +H A G +E+V+ L K + D PLH AA G ++++ L+
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYWGH-LEIVEVLLKNGA 104
Query: 131 ESLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFN 173
+ + + S+ T LHLA K +LE +VL+K N + F
Sbjct: 105 D-VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFG 146
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 71 GQTAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICP 130
G T +H A G +E+V+ L K + + D + PLH AA+ G ++++ L+
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADVNAI-DIMGSTPLHLAALIGH-LEIVEVLLKHGA 104
Query: 131 ESLEKLTSNQDTALHLAVKNSHLEAFQVLVK 161
+ + + + DT LHLA HLE +VL+K
Sbjct: 105 D-VNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 142 TALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALE 201
T LHLA HLE +VL+K H + N + G+T LHLA +EIV+ L
Sbjct: 49 TPLHLAATYGHLEIVEVLLK----HGAD--VNAIDIMGSTPLHLAALIGHLEIVEVLLKH 102
Query: 202 SSNSSSIMIRVNTLNKQGQTALEVC 226
++ VN ++ G T L +
Sbjct: 103 GAD-------VNAVDTWGDTPLHLA 120
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 102/242 (42%), Gaps = 40/242 (16%)
Query: 14 EVKLLLSKIPKLSDDVIRASSSSENNPLLTACEYGNHQVAKEIASRWPKLAMIKNQHGQT 73
E+ + S++ L+ D++ S LL A GN + + ++ P K +
Sbjct: 55 ELGVRFSRMQSLTLDLLGPSE------LLLALNMGNTSFNEVMEAQLPSHGGPK----PS 104
Query: 74 AVHTVAERGDVEMVQFLGKQNPESCLVED--------NLSMIPLHRAAMNGQSVDVIRAL 125
A + R D M +++ + C E N ++ + A NGQ D + L
Sbjct: 105 AESDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQ--DFGQPL 162
Query: 126 VSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHL 185
++ E+L LHLAVK ++ + ++ + I N H+ + K DGNT LH
Sbjct: 163 PGPDAQAPEELV------LHLAVKVANQASLPLVDFI--IQNGGHL-DAKAADGNTALHY 213
Query: 186 ATFNKSIEIVKALALESSNSSSIMIRVNTLNKQGQTALEVCKANSEDSVFKEIGLILQEA 245
A + +K L + V T+N+ G+TAL++ + KE +L++A
Sbjct: 214 AALYNQPDCLKLLLKGRA-------LVGTVNEAGETALDIARKKHH----KECEELLEQA 262
Query: 246 SA 247
A
Sbjct: 263 QA 264
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 37.4 bits (85), Expect = 0.018, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 142 TALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALE 201
T L+LA + HLE +VL+K N V N + G T LHLA F +EI + L
Sbjct: 49 TPLYLATAHGHLEIVEVLLK-----NGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLKH 102
Query: 202 SSNSSSIMIRVNTLNKQGQTALEVCKANSEDSV 234
++ VN +K G+TA ++ N + +
Sbjct: 103 GAD-------VNAQDKFGKTAFDISIGNGNEDL 128
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 102/242 (42%), Gaps = 40/242 (16%)
Query: 14 EVKLLLSKIPKLSDDVIRASSSSENNPLLTACEYGNHQVAKEIASRWPKLAMIKNQHGQT 73
E+ + S++ L+ D++ S LL A GN + + ++ P K +
Sbjct: 74 ELGVRFSRMQSLTLDLLGPSE------LLLALNMGNTSFNEVMEAQLPSHGGPK----PS 123
Query: 74 AVHTVAERGDVEMVQFLGKQNPESCLVED--------NLSMIPLHRAAMNGQSVDVIRAL 125
A + R D M +++ + C E N ++ + A NGQ D + L
Sbjct: 124 AESDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQ--DFGQPL 181
Query: 126 VSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHL 185
++ E+L LHLAVK ++ + ++ + I N H+ + K DGNT LH
Sbjct: 182 PGPDAQAPEELV------LHLAVKVANQASLPLVDFI--IQNGGHL-DAKAADGNTALHY 232
Query: 186 ATFNKSIEIVKALALESSNSSSIMIRVNTLNKQGQTALEVCKANSEDSVFKEIGLILQEA 245
A + +K L + V T+N+ G+TAL++ + KE +L++A
Sbjct: 233 AALYNQPDCLKLLLKGRA-------LVGTVNEAGETALDIARKKHH----KECEELLEQA 281
Query: 246 SA 247
A
Sbjct: 282 QA 283
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 71 GQTAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICP 130
G T +H A G +E+V+ L K + + D PLH AA+ G ++++ L+
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADVNAI-DIXGSTPLHLAALIGH-LEIVEVLLKHGA 104
Query: 131 ESLEKLTSNQDTALHLAVKNSHLEAFQVLVK 161
+ + + + DT LHLA HLE +VL+K
Sbjct: 105 D-VNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 142 TALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALE 201
T LHLA HLE +VL+K H + N + G+T LHLA +EIV+ L
Sbjct: 49 TPLHLAATYGHLEIVEVLLK----HGAD--VNAIDIXGSTPLHLAALIGHLEIVEVLLKH 102
Query: 202 SSNSSSIMIRVNTLNKQGQTALEVC 226
++ VN ++ G T L +
Sbjct: 103 GAD-------VNAVDTWGDTPLHLA 120
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 136 LTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIV 195
+T + DTALHLAV + H L+ S H + +N+ G T LHLA V
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE---YLDLQNDLGQTALHLAAILGEASTV 61
Query: 196 KALALESSNSSSIMIRVNTLNKQGQTALEV-CK 227
+ L + + +++ + G TAL + C+
Sbjct: 62 EKL---YAAGAGVLV----AERGGHTALHLACR 87
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 171 VFNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVNTLNKQGQTALEVCKANS 230
VF + EDG+T LHLA ++ + L S+ + ++ N GQTAL +
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ----NDLGQTALHLAAILG 56
Query: 231 EDSVFKEI 238
E S +++
Sbjct: 57 EASTVEKL 64
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 136 LTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIV 195
+T + DTALHLAV + H L+ S H + +N+ G T LHLA V
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE---YLDLQNDLGQTALHLAAILGEASTV 61
Query: 196 KALALESSNSSSIMIRVNTLNKQGQTALEV-CK 227
+ L + + +++ + G TAL + C+
Sbjct: 62 EKL---YAAGAGVLV----AERGGHTALHLACR 87
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 171 VFNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVNTLNKQGQTALEVCKANS 230
VF + EDG+T LHLA ++ + L S+ + ++ N GQTAL +
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ----NDLGQTALHLAAILG 56
Query: 231 EDSVFKEI 238
E S +++
Sbjct: 57 EASTVEKL 64
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 141 DTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNED---GNTVLHLATFNKSIEIVKA 197
+TALH+A +LEA VL++ + E VF + G T LH+A N+++ +V+A
Sbjct: 38 ETALHIAALYDNLEAAMVLMEAAP----ELVFEPMTSELYEGQTALHIAVINQNVNLVRA 93
Query: 198 LALESSNSSS 207
L ++ S+
Sbjct: 94 LLARGASVSA 103
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 173 NWKNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVNTLNKQGQTALEVCKANSED 232
N K++DG T LHLA +EIV+ L ++ VN +K G+TA ++ S D
Sbjct: 29 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-------VNAQDKFGKTAFDI----SID 77
Query: 233 SVFKEIGLILQEAS 246
+ +++ ILQ+A+
Sbjct: 78 NGNEDLAEILQKAA 91
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 71 GQTAVHTVAERGDVEMVQ--FLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSI 128
G+TA+ V + G+ E+ + L NP+ ++D +H AA GQ +D ++ L+
Sbjct: 38 GRTALQ-VMKLGNPEIARRLLLRGANPD---LKDRTGFAVIHDAARAGQ-LDTLQTLLEF 92
Query: 129 CPE-SLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLAT 187
+ ++E N LHLA K HL + LVK H +V +N G+T LA
Sbjct: 93 QADVNIEDNEGN--LPLHLAAKEGHLRVVEFLVK----HTASNV-GHRNHKGDTACDLAR 145
Query: 188 FNKSIEIVKALALESSNSSS 207
E+V + + ++
Sbjct: 146 LYGRNEVVSLMQANGAGGAT 165
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 41 LLTACEYGNHQVAKEIASRWPKLAMIKNQHGQTAVHTVAERGDVEMVQFLGKQNPESCLV 100
L AC G+ + + R + N G TA+H +V+MV+FL +N +
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDMVKFL-VENGANINQ 101
Query: 101 EDNLSMIPLHRAAMNGQSVDVIRALVS 127
DN IPLH AA G +D+ L+S
Sbjct: 102 PDNEGWIPLHAAASCG-YLDIAEYLIS 127
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 13/88 (14%)
Query: 142 TALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALE 201
TALH+A + E ++L++ + N K+ DG T LH A E + L
Sbjct: 201 TALHVAAAKGYTEVLKLLIQAR------YDVNIKDYDGWTPLHAAAHWGKEEACRILV-- 252
Query: 202 SSNSSSIMIRVNTLNKQGQTALEVCKAN 229
+ + +NK GQTA +V +
Sbjct: 253 -----ENLCDMEAVNKVGQTAFDVADED 275
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 102 DNLSMIPLHRAAMNGQSVDVIRAL-VSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLV 160
D+ + +H AA GQ+ +V R + + P + TALHLA K ++ + L
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGC---TALHLACKFGCVDTAKYLA 73
Query: 161 KVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKAL---ALESSNSSSIMI------R 211
V ++H+ H G +HLA ++V AL A E ++
Sbjct: 74 SVGEVHSLWH--------GQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDERE 125
Query: 212 VNTLNK-----QGQTALEVC 226
VN + +GQTAL C
Sbjct: 126 VNEIGSHVKHCKGQTALHWC 145
>pdb|3P4E|A Chain A, Phosphoribosylformylglycinamidine Cyclo-Ligase From Vibrio
Cholerae
Length = 349
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 171 VFNWKNEDGNTVLH--LATFNKSIEIVKALALESSNSSSIMIRVNTLNKQGQTAL---EV 225
+F W E GN H TFN + ++ AL + +N++ V L +G+TA E+
Sbjct: 282 IFQWLQEKGNVTTHEMYRTFNCGVGLIIALPKDQANAA-----VALLQAEGETAWVIGEI 336
Query: 226 CKANSEDS 233
ANS ++
Sbjct: 337 AAANSNEA 344
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 109 LHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNK 168
L AA GQ D +R L++ + K N T LHLA +N HLE ++L++ N
Sbjct: 10 LLEAARAGQD-DEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGADVNA 67
Query: 169 EHVF 172
+ F
Sbjct: 68 QDKF 71
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 82/212 (38%), Gaps = 49/212 (23%)
Query: 40 PLLTACEYGNHQVAKEIASRWPKLAMIKNQHGQ----------TAVHTVAERGDVEMVQF 89
PL AC YG+++V + + +HG T +H A + VE+
Sbjct: 94 PLHNACSYGHYEVTELLL-----------KHGACVNAMDLWQFTPLHEAASKNRVEVCSL 142
Query: 90 LGKQNPESCLV----EDNLSMIPL-------------HRAAMNGQSVDVIRALVSICPES 132
L + LV + + M P H + D+ + ++ E
Sbjct: 143 LLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEI 202
Query: 133 LE-KLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKS 191
+ K + +TALH AV + H + QV + K N KN+D T LH+A
Sbjct: 203 INFKQPQSHETALHCAVASLHPKRKQV---AELLLRKGANVNEKNKDFMTPLHVAAERAH 259
Query: 192 IEIVKALALESSNSSSIMIRVNTLNKQGQTAL 223
++++ L + ++N L+ GQTAL
Sbjct: 260 NDVMEVLHKHGA-------KMNALDSLGQTAL 284
>pdb|2J6L|A Chain A, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|B Chain B, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|C Chain C, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|D Chain D, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|E Chain E, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|F Chain F, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|G Chain G, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
pdb|2J6L|H Chain H, Structure Of Aminoadipate-Semialdehyde Dehydrogenase
Length = 500
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 142 TALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNE 177
T L +H E F ++ V K N+E VF W NE
Sbjct: 388 TGLGHDASIAHTETFAPILYVFKFQNEEEVFAWNNE 423
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 175 KNEDGNTVLHLATFNKSIEIVKALALESSNSSSIMIRVNTLNKQGQTALEVCKANSEDSV 234
K+++G+T LHLA N +E+VK L LE+ V +K G+TA ++ N + +
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVK-LLLEAGAD------VXAQDKFGKTAFDISIDNGNEDL 105
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 109 LHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVLVK 161
L AA GQ D +R L++ + K N T LHLA +N HLE ++L++
Sbjct: 28 LLEAARAGQD-DEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLE 78
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 71 GQTAVHTVAERGDVEMVQ--FLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSI 128
G+TA+ V + G+ E+ + L NP+ ++D +H AA G +D ++ L+
Sbjct: 38 GRTALQ-VMKLGNPEIARRLLLRGANPD---LKDRTGFAVIHDAARAG-FLDTLQTLLEF 92
Query: 129 CPE-SLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLAT 187
+ ++E N LHLA K HL + LVK H +V +N G+T LA
Sbjct: 93 QADVNIEDNEGN--LPLHLAAKEGHLRVVEFLVK----HTASNV-GHRNHKGDTACDLAR 145
Query: 188 FNKSIEIV 195
E+V
Sbjct: 146 LYGRNEVV 153
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 15/140 (10%)
Query: 71 GQTAVHTVAERGDVEMVQ--FLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSI 128
G+TA+ V + G+ E+ + L NP+ ++D +H AA G +D ++ L+
Sbjct: 38 GRTALQ-VMKLGNPEIARRLLLRGANPD---LKDRTGFAVIHDAARAG-FLDTLQTLLEF 92
Query: 129 CPE-SLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLAT 187
+ ++E N LHLA K HL + LVK H +V +N G+T LA
Sbjct: 93 QADVNIEDNEGN--LPLHLAAKEGHLRVVEFLVK----HTASNV-GHRNHKGDTACDLAR 145
Query: 188 FNKSIEIVKALALESSNSSS 207
E+V + + ++
Sbjct: 146 LYGRNEVVSLMQANGAGGAT 165
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 60/155 (38%), Gaps = 15/155 (9%)
Query: 78 VAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLT 137
A+ GDVE V+ L +C + PLH AA + V V+ L+ + K
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR-VSVVEYLLQHGADVHAKDK 73
Query: 138 SNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKA 197
LH A H E ++LVK + N ++ + T LH A EI K
Sbjct: 74 GGL-VPLHNACSYGHYEVAELLVKHGAVVNVADLWKF------TPLHEAAAKGKYEICKL 126
Query: 198 LALESSNSSSIMIRVNTLNKQGQTALEVCKANSED 232
L ++ + N+ G T L++ K D
Sbjct: 127 LLQHGADPTKK-------NRDGNTPLDLVKDGDTD 154
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 71 GQTAVHTVAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICP 130
G+TA+H A+ + +V++L + + +D P+ AA G+ ++V+ L+
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGR-IEVVXYLIQQGA 337
Query: 131 ESLEKLTSNQDTALHLAVKNSH 152
S+E + + TA LA N+H
Sbjct: 338 -SVEAVDATDHTARQLAQANNH 358
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 60/155 (38%), Gaps = 15/155 (9%)
Query: 78 VAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLT 137
A+ GDVE V+ L +C + PLH AA + V V+ L+ + K
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR-VSVVEYLLQHGADVHAKDK 75
Query: 138 SNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKA 197
LH A H E ++LVK + N ++ + T LH A EI K
Sbjct: 76 GGL-VPLHNACSYGHYEVAELLVKHGAVVNVADLWKF------TPLHEAAAKGKYEICKL 128
Query: 198 LALESSNSSSIMIRVNTLNKQGQTALEVCKANSED 232
L ++ + N+ G T L++ K D
Sbjct: 129 LLQHGADPTKK-------NRDGNTPLDLVKDGDTD 156
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 60/155 (38%), Gaps = 15/155 (9%)
Query: 78 VAERGDVEMVQFLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLT 137
A+ GDVE V+ L +C + PLH AA + V V+ L+ + K
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR-VSVVEYLLQHGADVHAKDK 77
Query: 138 SNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKA 197
LH A H E ++LVK + N ++ + T LH A EI K
Sbjct: 78 GGL-VPLHNACSYGHYEVAELLVKHGAVVNVADLWKF------TPLHEAAAKGKYEICKL 130
Query: 198 LALESSNSSSIMIRVNTLNKQGQTALEVCKANSED 232
L ++ + N+ G T L++ K D
Sbjct: 131 LLQHGADPTKK-------NRDGNTPLDLVKDGDTD 158
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 61/168 (36%), Gaps = 46/168 (27%)
Query: 42 LTACEYGNHQVAKEIASRW--PKLAMIKNQHGQTAVHTVAERGDVEMVQFLGKQNPESCL 99
L + GN ++A+ + R P L K++ G +H A G ++ +Q L +N
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDL---KDRTGFAVIHDAARAGFLDTLQTL-LENQADVN 97
Query: 100 VEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVL 159
+EDN +PLH LA K HL + L
Sbjct: 98 IEDNEGNLPLH-----------------------------------LAAKEGHLRVVEFL 122
Query: 160 VKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALESSNSSS 207
VK H +V +N G+T LA E+V + + ++
Sbjct: 123 VK----HTASNV-GHRNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 108 PLHRAAMNGQSVDVIRALVS--ICPESLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKI 165
PLH AA G ++ +R + + L+K S TAL+ A H + + L I
Sbjct: 76 PLHEAAKRG-NLSWLRECLDNRVGVNGLDKAGS---TALYWACHGGHKDIVEXLFTQPNI 131
Query: 166 HNKEHVFNWKNEDGNTVLHLATFNKSIEIVKAL 198
N +N+ G+T LH A + +IV+ L
Sbjct: 132 E-----LNQQNKLGDTALHAAAWKGYADIVQLL 159
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 15/140 (10%)
Query: 71 GQTAVHTVAERGDVEMVQ--FLGKQNPESCLVEDNLSMIPLHRAAMNGQSVDVIRALVSI 128
G+TA+ V + G+ E+ + L NP+ ++D +H AA G +D ++ L+
Sbjct: 38 GRTALQ-VMKLGNPEIARRLLLRGANPD---LKDRTGNAVIHDAARAG-FLDTLQTLLEF 92
Query: 129 CPE-SLEKLTSNQDTALHLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLAT 187
+ ++E N LHLA K HL + LVK H +V +N G+T LA
Sbjct: 93 QADVNIEDNEGN--LPLHLAAKEGHLRVVEFLVK----HTASNV-GHRNHKGDTACDLAR 145
Query: 188 FNKSIEIVKALALESSNSSS 207
E+V + + ++
Sbjct: 146 LYGRNEVVSLMQANGAGGAT 165
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 100 VEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVL 159
V+D P+H AA G +D ++ LV + + L S +HLA++ H L
Sbjct: 71 VQDASGTSPVHDAARTG-FLDTLKVLVEHGAD-VNALDSTGSLPIHLAIREGHSSVVSFL 128
Query: 160 VKVSKIHNKE 169
S +H+++
Sbjct: 129 APESDLHHRD 138
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 100 VEDNLSMIPLHRAAMNGQSVDVIRALVSICPESLEKLTSNQDTALHLAVKNSHLEAFQVL 159
V+D P+H AA G +D ++ LV + + L S +HLA++ H L
Sbjct: 69 VQDASGTSPVHDAARTG-FLDTLKVLVEHGAD-VNALDSTGSLPIHLAIREGHSSVVSFL 126
Query: 160 VKVSKIHNKE 169
S +H+++
Sbjct: 127 APESDLHHRD 136
>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei
Length = 470
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 145 HLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALESSN 204
H+A +NSHLE ++ +V ++ NK V + ++ +H + E+VK ++ S++
Sbjct: 130 HVAFENSHLEVDELESEVRRLVNKHMVVDDSLKERCIDMHFKLYTSKEELVKR-SVSSTD 188
Query: 205 SSSIMIRVNTL 215
S + L
Sbjct: 189 ESGRFVETTEL 199
>pdb|3QD9|A Chain A, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|B Chain B, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|C Chain C, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|D Chain D, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
Length = 470
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 145 HLAVKNSHLEAFQVLVKVSKIHNKEHVFNWKNEDGNTVLHLATFNKSIEIVKALALESSN 204
H+A +NSHLE ++ +V ++ NK V + ++ +H + E+VK ++ S++
Sbjct: 130 HVAFENSHLEVDELESEVRRLVNKHMVVDDSLKERCIDMHFKLYTSKEELVKR-SVSSTD 188
Query: 205 SSSIMIRVNTL 215
S + L
Sbjct: 189 ESGRFVETTEL 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,374,995
Number of Sequences: 62578
Number of extensions: 406179
Number of successful extensions: 1474
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 1206
Number of HSP's gapped (non-prelim): 178
length of query: 444
length of database: 14,973,337
effective HSP length: 102
effective length of query: 342
effective length of database: 8,590,381
effective search space: 2937910302
effective search space used: 2937910302
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)