BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013370
(444 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 139/258 (53%), Gaps = 21/258 (8%)
Query: 38 RLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAML 97
++LDLVN G++ +L QLLE G HADPHPGNL T G++ FLDFG++ + +FA++
Sbjct: 354 KVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPDGKLAFLDFGMMSETPEEARFAII 413
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLG 157
+VH+VN D++++ + + P + + L D + + ++ F ++
Sbjct: 414 GHVVHLVNRDYEAMARDYYALKFLSPDVDVTPIIPALRDFFDDA-LNYTVSELNFKTLVD 472
Query: 158 KIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTENSVAT 217
+ ++ +Y F +PPYY L+LRSL LEGLA+ DP+FK A+YP+ ++LLT+ +
Sbjct: 473 GLGAVFYQYPFNVPPYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPYL 532
Query: 218 RKILHSVVFNKKKEFQWQRLSLFLRVGATRKGLQQVIAPKTETTLDYLPNRVGVFDAANL 277
R L ++F K +F+W RL L+ G+ + DA
Sbjct: 533 RDALIELLF-KDGKFRWNRLENLLQQGSKDRDF-------------------SAKDALQP 572
Query: 278 VLRLLRTNNGVVLRRLLM 295
VL+LL NG LR L++
Sbjct: 573 VLKLLLDPNGEELRLLVI 590
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 136/250 (54%), Gaps = 19/250 (7%)
Query: 1 MEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGIL 60
MEW+ G T++ ++ Q +DA LV GV+ +L QLLE G
Sbjct: 290 MEWVEGIKLTNIKAIQA-------------QGIDAT----HLVEVGVQCSLRQLLEHGFF 332
Query: 61 HADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDV 120
HADPHPGNL + G++ +LDFG++ ++ ++ ++ ++VH+VN D+ SL ++D
Sbjct: 333 HADPHPGNLLAMADGRLAYLDFGMMSTIQPYQRYGLIEAVVHLVNRDFDSLAKDYVKLDF 392
Query: 121 VRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRS 180
++P T+ + L G + ++ F + ++ ++ ++ FR+P YY L++RS
Sbjct: 393 LKPDTDLKPIIPALGQVFGNA-LGASVAELNFKSITDQMSAMMYEFPFRVPAYYALIIRS 451
Query: 181 LASLEGLAIAGDPHFKTFEAAYPFVIQKLLTENSVATRKILHSVVFNKKKEFQWQRLSLF 240
+ +LEG+AI DP+FK AYP++ ++LLT+ S R L ++F K+ F+W RL
Sbjct: 452 MVTLEGIAIGIDPNFKVLSKAYPYIAKRLLTDQSEELRTSLKELLF-KEGSFRWNRLENL 510
Query: 241 LRVGATRKGL 250
LR G
Sbjct: 511 LRNAKNSPGF 520
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 151 bits (382), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 136/257 (52%), Gaps = 21/257 (8%)
Query: 41 DLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASI 100
D++ GV + L QLLE G HADPHPGNL T G++ ++DFG++ ++E + + +SI
Sbjct: 280 DIIRIGVTSGLRQLLEHGFFHADPHPGNLFATLDGRMAYIDFGMMDQLEPGTKETIASSI 339
Query: 101 VHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIW 160
V ++N D+ +L + + P T+ + LE+ G + D F +
Sbjct: 340 VQLINKDYLALTEDFIALGFLAPNTDITPIIPALENVFGSA-IGQSVQDFNFKTITDDFS 398
Query: 161 SIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTENSVATRKI 220
+ Y FR+P + L++RSL + EGLA++ DP+FK E AYP+V ++LLT S R+
Sbjct: 399 ELMYDYPFRVPAKFALIIRSLVTQEGLALSLDPNFKIVEVAYPYVARRLLTGESPQLRRQ 458
Query: 221 LHSVVFNKKKEFQWQRLSLFLRVGATRKGLQQVIAPKTETTLDYLPNRVGVFDAANLVLR 280
L V+F K +FQWQRL L + +++T D LP A L L+
Sbjct: 459 LIDVLF-KNGKFQWQRLENMLSIA------------RSDTKFDLLP-------TAQLGLQ 498
Query: 281 LLRTNNGVVLRRLLMTA 297
L + G+ LRR ++ A
Sbjct: 499 FLFSEEGLYLRRQILLA 515
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 109/189 (57%), Gaps = 1/189 (0%)
Query: 40 LDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLAS 99
L LV GV + QLLE G HADPHPGN T GQ+ +LDFG++ + + + +
Sbjct: 320 LYLVEVGVYCSFNQLLEYGFYHADPHPGNFLRTYDGQLAYLDFGMMGDFRPELRDGFMEA 379
Query: 100 IVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKI 159
+H+VN D+++L + ++ P VT L D + G+ ++ F +LG +
Sbjct: 380 CLHLVNRDFKALAKDFVTLGLLPPTAEKSAVTKALTDVFQDA-ISRGVRNISFGDLLGDL 438
Query: 160 WSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTENSVATRK 219
++ FR+PPY++LV+RSLA LEG+AI P++K + YP++ +K+LT++S +
Sbjct: 439 GKTMYRFKFRIPPYFSLVIRSLAVLEGIAIGISPNYKVLGSTYPWIARKILTDSSPQLKS 498
Query: 220 ILHSVVFNK 228
L ++++ +
Sbjct: 499 SLQNLLYEE 507
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 114/208 (54%), Gaps = 2/208 (0%)
Query: 34 DAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQ 93
DA L + GV A L QLLE G+ H DPHPGN+ G+I ++DFG + + ++++
Sbjct: 371 DAGIDLNGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMQDGRIAYVDFGNVAVLSQQNK 430
Query: 94 FAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFS 153
++ ++VH VN D+ + + T + + T+ + LE A+ + G+ D F
Sbjct: 431 QILIDAVVHAVNEDYGEMANDFTRLGFLAKDTDVSPIVPALE-AIWQNSAGKGLADFNFR 489
Query: 154 RVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 213
V G+ + + R+P ++LV+RSL + EG+ P FK E AYP+V ++LLT+
Sbjct: 490 SVTGQFNKLVYDFPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDP 549
Query: 214 SVATRKILHSVVFNKKKEFQWQRLSLFL 241
+ A R+ L V+F K FQW+RL L
Sbjct: 550 NPALRERLIQVLF-KDGVFQWKRLENLL 576
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 4/179 (2%)
Query: 29 DRQKLDAKWRLLDLV-NKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCR 87
DRQ L+ LDLV G+ A L QLL G +DPHPGN+ S G + F DFG +
Sbjct: 259 DRQALETAGINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAVDSQGDLIFYDFGTMAE 318
Query: 88 MERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGI 147
++ + M+ + ++ D ++ +L M +V P + + + L F+D
Sbjct: 319 VKIIAKDQMVQTFFAVLRKDTNQVLEALIYMGLVEPKGDLSPIKRIINFLLD--NFRDKP 376
Query: 148 PDVK-FSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 205
D+K F +V +++++ + FR+PP T +L+S+++L+G+A A DP + A+ PF+
Sbjct: 377 IDIKAFDQVGEEVYAMFQQQPFRLPPQMTFILKSISTLDGIARALDPRYNLIAASQPFI 435
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 119/270 (44%), Gaps = 36/270 (13%)
Query: 41 DLVNKGVEATLVQLLETGILHADPHPGNLRYT-SSGQIGFLDFGLLCRMERKHQFAMLAS 99
+L G A L QLL G HADPHPGNL + +G++ F DFG++ + + ++ +
Sbjct: 295 ELAQLGARAYLFQLLNHGFFHADPHPGNLAVSPEAGELIFYDFGMMGEITPDTKNKLMDT 354
Query: 100 IVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFK-DGIPDVKF-----S 153
+ + + + +V+SL + L+ T D+ V+F D D F +
Sbjct: 355 LFGVAEKNAERIVNSLVAL-------GALKETEDMGPIRRSVQFLLDNFMDKPFEEQSIT 407
Query: 154 RVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 213
++ ++ IA FR P +T V+R+ ++LEG+ DP F A PF +Q + N
Sbjct: 408 KISDDLYEIAYDQPFRFPATFTFVMRAFSTLEGVGKGLDPDFNFMAVAQPFALQIMNNSN 467
Query: 214 SVATRKILHSVVFNKKKEFQWQRLSLFLRVGATRKGLQQVIAPKTETTLDYLPNRVGVFD 273
FN + ++VG + GL + I E +LD L D
Sbjct: 468 G-----------FNPAGNIMDELGRQAVQVGNSALGLPRRI----EDSLDRL-------D 505
Query: 274 AANLVLRLLRTNNGVVLRRLLMTADGASLI 303
++ +R+ T +LRR+ G + +
Sbjct: 506 RGDIRVRVRSTETDRLLRRMGTMQMGTNYV 535
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 1 MEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGIL 60
+EWM G +D+ L DG H L + GVE Q+ G
Sbjct: 238 IEWMDGTPVSDIAKLKA----DGIDLH-------------KLADYGVEIFFTQVFRDGFF 280
Query: 61 HADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDV 120
HAD HPGN+ + + LDFG++ + + + + + N D++ + + E
Sbjct: 281 HADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGW 340
Query: 121 VRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRS 180
V T + + A+ E F I + F VL +++ ++ +++ + P L+ ++
Sbjct: 341 VPADTRAEELEAAVR-AVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKT 399
Query: 181 LASLEGLAIAGDPHFKTFEAAYPFVIQ 207
L ++EGL DP ++ A PF+++
Sbjct: 400 LLNIEGLGRQLDPDLDLWKTAKPFLVK 426
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 18/207 (8%)
Query: 1 MEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGIL 60
+EWM G D+ L DG H L + GVE Q+ G
Sbjct: 238 IEWMDGTPVADIAKLKA----DGIDLH-------------KLADYGVEIFFTQVFRDGFF 280
Query: 61 HADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDV 120
HAD HPGN+ + + LDFG++ + + + + + N D++ + + E
Sbjct: 281 HADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGW 340
Query: 121 VRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRS 180
V T + + A+ E F I + F VL +++ ++ +++ + P L+ ++
Sbjct: 341 VPADTRAEELEAAVR-AVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKT 399
Query: 181 LASLEGLAIAGDPHFKTFEAAYPFVIQ 207
L ++EGL DP ++ A PF+++
Sbjct: 400 LLNIEGLGRQLDPDLDLWKTAKPFLVK 426
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 6/189 (3%)
Query: 46 GVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVN 105
GVE Q+ G HAD HPGN+ + G+ LDFG++ + + + + + N
Sbjct: 269 GVEIFFTQVFRHGFFHADMHPGNIFVAADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFN 328
Query: 106 GDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALK 165
D+ + + E V T + + + E F+ + ++ F VL +++ + +
Sbjct: 329 RDYHRVATAHIESGWVPRDTRAEELEAAVR-TVCEPIFEKPLSEISFGMVLLRLFETSRR 387
Query: 166 YHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTENSVATRKILHSVV 225
++ + P L+ ++L ++EGL DP ++ A PF + K + E + R +L ++
Sbjct: 388 FNVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWDTAKPF-LTKWMNEQ-IGWRGLLRTL- 444
Query: 226 FNKKKEFQW 234
K + QW
Sbjct: 445 --KHEAPQW 451
>sp|Q9CKD4|UBIB_PASMU Probable ubiquinone biosynthesis protein UbiB OS=Pasteurella
multocida (strain Pm70) GN=ubiB PE=3 SV=1
Length = 527
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 12/179 (6%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAML 97
L +GV+ Q+ HAD HPGN+ + Q +D G++ R+ + +
Sbjct: 275 LAERGVQVFFTQVFRDSFFHADMHPGNIFVNRAHPDDPQYIGIDCGIVGRLNDHDKRYLA 334
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVE---FKDGIPDVKFSR 154
S V N D++ + EM V T D E A EV F + ++ F
Sbjct: 335 ESFVAFFNRDYRRV----AEMHVASGWTPKDTNIDDFEQAFREVCEPIFAKPLSEISFGH 390
Query: 155 VLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 213
VL ++++A +Y+ + P L+ ++L +EGL P ++ A PF +QK L E
Sbjct: 391 VLLNLFNVAREYNMEVQPQLVLLQKTLLYIEGLGRQLYPQLDLWDTAKPF-LQKWLDEQ 448
>sp|Q0I208|UBIB_HAES1 Probable ubiquinone biosynthesis protein UbiB OS=Haemophilus somnus
(strain 129Pt) GN=ubiB PE=3 SV=1
Length = 544
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 12/179 (6%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAML 97
L +GV+ Q+ HAD HPGN+ Y + Q +D G++ ++ + +
Sbjct: 269 LAERGVQVFFTQVFRDSFFHADMHPGNIFVNPHYPENPQYIGIDCGIVGKLNESDKRYLA 328
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEV---EFKDGIPDVKFSR 154
S V N D++ + + TN D E A EV F + ++ F++
Sbjct: 329 ESFVAFFNRDYRRVAQMHVDAGWTPQDTNI----DDFEQAFREVCEPIFAKPLSEISFAQ 384
Query: 155 VLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 213
VL ++++A +++ ++ P L+ ++L +EGL P ++ A PF +Q L E
Sbjct: 385 VLLNLFNVAREFNMQVQPQLVLLQKTLLYIEGLGRQLYPQLDLWDTAKPF-LQNWLNEQ 442
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAML 97
L +GVE Q+ G HAD HPGN++ + G+ LDFG++ + + +
Sbjct: 264 LAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLA 323
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLG 157
+ + D+ + E V P T + + A+ E F + D+ +VL
Sbjct: 324 QNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQVLM 382
Query: 158 KIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 213
+++S + +++ + P L+ +++ ++EGL + DP ++ A P+ +++ +TE
Sbjct: 383 RLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPY-LERWMTEQ 437
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAML 97
L +GVE Q+ G HAD HPGN++ + G+ LDFG++ + + +
Sbjct: 264 LAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLA 323
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLG 157
+ + D+ + E V P T + + A+ E F + D+ +VL
Sbjct: 324 QNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQVLM 382
Query: 158 KIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 213
+++S + +++ + P L+ +++ ++EGL + DP ++ A P+ +++ +TE
Sbjct: 383 RLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPY-LERWMTEQ 437
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAML 97
L +GVE Q+ G HAD HPGN++ + G+ LDFG++ + + +
Sbjct: 264 LAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLA 323
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLG 157
+ + D+ + E V P T + + A+ E F + D+ +VL
Sbjct: 324 QNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQVLM 382
Query: 158 KIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 213
+++S + +++ + P L+ +++ ++EGL + DP ++ A P+ +++ +TE
Sbjct: 383 RLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPY-LERWMTEQ 437
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAML 97
L +GVE Q+ G HAD HPGN++ + G+ LDFG++ + + +
Sbjct: 264 LAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLA 323
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLG 157
+ + D+ + E V P T + + A+ E F + D+ +VL
Sbjct: 324 QNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQVLM 382
Query: 158 KIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 213
+++S + +++ + P L+ +++ ++EGL + DP ++ A P+ +++ +TE
Sbjct: 383 RLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPY-LERWMTEQ 437
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAML 97
L +GVE Q+ G HAD HPGN++ + G+ LDFG++ + + +
Sbjct: 264 LAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLA 323
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLG 157
+ + D+ + E V P T + + A+ E F + D+ +VL
Sbjct: 324 QNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQVLM 382
Query: 158 KIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 213
+++S + +++ + P L+ +++ ++EGL + DP ++ A P+ +++ +TE
Sbjct: 383 RLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPY-LERWMTEQ 437
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAML 97
L +GVE Q+ G HAD HPGN++ + G+ LDFG++ + + +
Sbjct: 264 LAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLA 323
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLG 157
+ + D+ + E V P T + + A+ E F + D+ +VL
Sbjct: 324 QNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQVLM 382
Query: 158 KIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 213
+++S + +++ + P L+ +++ ++EGL + DP ++ A P+ +++ +TE
Sbjct: 383 RLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPY-LERWMTEQ 437
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAML 97
L +GVE Q+ G HAD HPGN++ + G+ LDFG++ + + +
Sbjct: 264 LAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLA 323
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLG 157
+ + D+ + E V P T + + A+ E F + D+ +VL
Sbjct: 324 QNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQVLM 382
Query: 158 KIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 213
+++S + +++ + P L+ +++ ++EGL + DP ++ A P+ +++ +TE
Sbjct: 383 RLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPY-LERWMTEQ 437
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAML 97
L +GVE Q+ G HAD HPGN++ + G+ LDFG++ + + +
Sbjct: 264 LAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLA 323
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLG 157
+ + D+ + E V P T + + A+ E F + D+ +VL
Sbjct: 324 QNFLAFFKRDYHRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQVLM 382
Query: 158 KIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTEN 213
+++S + +++ + P L+ +++ ++EGL + DP ++ A P+ +++ +TE
Sbjct: 383 RLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPY-LERWMTEQ 437
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 5/168 (2%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAML 97
L +GVE Q+ G HAD HPGN++ + G+ LDFG++ + + +
Sbjct: 264 LAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLA 323
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLG 157
+ + D+ + E V P T + + A+ E F + D+ +VL
Sbjct: 324 QNFLAFFKRDYHRVATLHLESGWVPPTTRVEELESAIR-AVCEPYFDRALKDISLGQVLM 382
Query: 158 KIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 205
+++S + +++ + P L+ +++ ++EGL + DP ++ A P++
Sbjct: 383 RLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 5/168 (2%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAML 97
L +GVE Q+ G HAD HPGN++ + G+ LDFG++ + + +
Sbjct: 264 LAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLA 323
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLG 157
+ + D+ + E V P T + + A+ E F + D+ +VL
Sbjct: 324 QNFLAFFKRDYHRVATLHLESGWVPPTTRVEELESAIR-AVCEPYFDRALKDISLGQVLM 382
Query: 158 KIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 205
+++S + +++ + P L+ +++ ++EGL + DP ++ A P++
Sbjct: 383 RLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|Q87CN1|UBIB_XYLFT Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=ubiB PE=3 SV=1
Length = 552
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 31/219 (14%)
Query: 1 MEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGIL 60
+E M G P+D I+L S +D + L +KG+ Q+
Sbjct: 239 LERMYG-IPSDDIALLDASGIDRKA----------------LSSKGIRVFYTQVFRDNFF 281
Query: 61 HADPHPGNL------RYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHS 114
HAD H GN+ S+ + LDFG++ ++ +K Q+ + + + I + D++ +
Sbjct: 282 HADAHSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAEL 341
Query: 115 LTEMDVVRPGTNTLRVTMDLEDA---LGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMP 171
E + P +LE A + E F + + + V+ K++ +A +Y +
Sbjct: 342 HVEAGWIPPHVRI----EELEAAARSVCEPYFTRPLSQISLAEVMMKLFHVARRYQLTLQ 397
Query: 172 PYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLL 210
P L+ ++L ++EG+ DP + A P V++++L
Sbjct: 398 PQLILLQKTLLNIEGVGRQLDPELDIWVVARP-VLERIL 435
>sp|B2I583|UBIB_XYLF2 Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M23) GN=ubiB PE=3 SV=1
Length = 552
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 31/219 (14%)
Query: 1 MEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGIL 60
+E M G P+D I+L S +D + L +KG+ Q+
Sbjct: 239 LERMYG-IPSDDIALLDASGIDRKA----------------LSSKGIRVFYTQVFRDNFF 281
Query: 61 HADPHPGNL------RYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHS 114
HAD H GN+ S+ + LDFG++ ++ +K Q+ + + + I + D++ +
Sbjct: 282 HADAHSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAEL 341
Query: 115 LTEMDVVRPGTNTLRVTMDLEDA---LGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMP 171
E + P +LE A + E F + + + V+ K++ +A +Y +
Sbjct: 342 HVEAGWIPPHVRI----EELEAAARSVCEPYFTRPLSQISLAEVMMKLFHVARRYQLTLQ 397
Query: 172 PYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLL 210
P L+ ++L ++EG+ DP + A P V++++L
Sbjct: 398 PQLILLQKTLLNIEGVGRQLDPELDIWVVARP-VLERIL 435
>sp|Q9PCE8|UBIB_XYLFA Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain 9a5c) GN=ubiB PE=3 SV=1
Length = 552
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 97/219 (44%), Gaps = 31/219 (14%)
Query: 1 MEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGIL 60
+E M G P+D I+L S +D + L +KG+ Q+
Sbjct: 239 LERMYG-IPSDDIALLDASGIDRKA----------------LSSKGIRVFYTQVFRDNFF 281
Query: 61 HADPHPGNL------RYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHS 114
HAD H GN+ S+ + LDFG++ ++ +K Q+ + + + I + D++ +
Sbjct: 282 HADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAEL 341
Query: 115 LTEMDVVRPGTNTLRVTMDLEDA---LGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMP 171
E + P +LE A + E F + + + VL K++ +A +Y +
Sbjct: 342 HVEAGWIPPHVRI----EELEAAARSVCEPYFTRPLSQISLAEVLMKLFHVARRYQLTLQ 397
Query: 172 PYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLL 210
P L+ ++L ++EG+ DP + A P V++++L
Sbjct: 398 PQLILLQKTLLNIEGVGRQLDPELDIWVVARP-VLERIL 435
>sp|B3PH50|UBIB_CELJU Probable ubiquinone biosynthesis protein UbiB OS=Cellvibrio
japonicus (strain Ueda107) GN=ubiB PE=3 SV=1
Length = 552
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 89/185 (48%), Gaps = 15/185 (8%)
Query: 28 LDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNL----RYTSSGQIGFLDFG 83
L+ Q+ D K L +GVE Q+ E HAD HPGN+ + S+ Q +D
Sbjct: 250 LNAQQTDMK----KLAERGVEIFFTQVFEHNFFHADMHPGNIFVAHEHPSAPQYIAVDMA 305
Query: 84 LLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDAL---GE 140
++ + R Q+ + +++ + D++ + E V + +RV +LE A+ E
Sbjct: 306 IVGSLTRADQYYLARNLLAMFRRDYRQVAELHVESGWV---PSHVRVE-ELEAAVRTVCE 361
Query: 141 VEFKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEA 200
F+ + ++ F++VL ++ A ++ + P L+ ++L ++EGL P +
Sbjct: 362 PIFEKPLKEISFAQVLLNLFRTARRFEMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWAT 421
Query: 201 AYPFV 205
A+PF+
Sbjct: 422 AHPFL 426
>sp|Q8PQT0|UBIB_XANAC Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=ubiB PE=3 SV=1
Length = 557
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 93/192 (48%), Gaps = 15/192 (7%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGF------LDFGLLCRMERKHQFA 95
L KGV Q+ HAD H GN+ S + LDFG++ ++ ++ Q+
Sbjct: 268 LAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYY 327
Query: 96 MLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA---LGEVEFKDGIPDVKF 152
+ + + I + D++ + E + + +R+ +LE A + E F + ++
Sbjct: 328 LAENFMAIFHKDYRRMAELHVEAGWM---PSNVRID-ELEAAARSVCEPYFNRPLSEISL 383
Query: 153 SRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTE 212
++VL K++ +A +Y + P L+ ++L ++EG+ DP + A P V++++L E
Sbjct: 384 AQVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPRLDIWAVARP-VLERILRE 442
Query: 213 NSVATRKILHSV 224
+ R++L +
Sbjct: 443 R-YSPRRVLREL 453
>sp|Q46189|YHG1_CLOPA Uncharacterized protein in hydrogenase 1 5'region (Fragment)
OS=Clostridium pasteurianum PE=3 SV=1
Length = 530
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 83/179 (46%), Gaps = 8/179 (4%)
Query: 30 RQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRME 89
++ L+ + L +L K + Q+ + G H DPHPGNL I ++DFG++ +
Sbjct: 231 KKLLNEGYDLEELGKKLTLSYFKQVFQDGFFHGDPHPGNL-LIRENHICYIDFGIMGTIS 289
Query: 90 RKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLE---DALGEVEFKDG 146
+ + ++ +I+ + D ++ + + V + N + +E D V K+
Sbjct: 290 KSLKISLNDAILAVAYHDVNKMISVIMSIGVKKGYVNRNSLYESIEYLFDNYISVSLKN- 348
Query: 147 IPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 205
+K S +L +I+ I+ + ++P T++L+S +EG+ P + P+V
Sbjct: 349 ---IKISVMLQEIFQISKNNNIKLPKELTMLLKSTLMIEGVIARISPELSIVDVLIPYV 404
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 5/168 (2%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAML 97
L +GVE Q+ G HAD HPGN++ + G+ LDFG++ + + +
Sbjct: 264 LAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLA 323
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLG 157
+ + D+ + E V P T + A+ E F + D+ +VL
Sbjct: 324 QNFLAFFKRDYHRVATLHLESGWV-PATTRVEELESAIRAVCEPYFDRALKDISLGQVLM 382
Query: 158 KIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 205
+++S + +++ + P L+ +++ ++EGL + DP ++ A P++
Sbjct: 383 RLFSTSRRFNVEIQPQLVLLQKTMLNVEGLGRSLDPELDLWKTAKPYL 430
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 88/187 (47%), Gaps = 7/187 (3%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAML 97
L GV Q+ G HAD HPGN+ +++ G+ LDFG++ ++ + + +
Sbjct: 261 LARDGVTIFFTQVFRDGFFHADMHPGNIMVSTAPATFGRYIALDFGIVGTLDSRDKEYLA 320
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLG 157
+ + D++ + E V P + + A+ E F + D+ +VL
Sbjct: 321 QNFLAFFRRDYRRVAELHIESGWV-PASTRVDELEGAVRAVCEPHFDRPLKDISLGQVLL 379
Query: 158 KIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTENSVAT 217
+++ + +++ + P L+ ++L ++EGL DP ++ A PF +++ + E V
Sbjct: 380 RLFQTSRRFNVEIQPQLVLLQKTLLNVEGLGRQLDPELDLWQTAKPF-LERWMNEQ-VGW 437
Query: 218 RKILHSV 224
R +L S+
Sbjct: 438 RALLGSI 444
>sp|Q491V8|UBIB_BLOPB Probable ubiquinone biosynthesis protein UbiB OS=Blochmannia
pennsylvanicus (strain BPEN) GN=ubiB PE=3 SV=1
Length = 546
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 86/185 (46%), Gaps = 15/185 (8%)
Query: 28 LDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNL--RYTSSGQIGFL--DFG 83
L +QK + K L +G+E Q+ H D HPGN+ Y G ++ D G
Sbjct: 256 LKKQKTNMKL----LAERGIEIFFTQVFRDSFFHGDMHPGNIFISYKHPGNPKYISVDCG 311
Query: 84 LLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVE- 142
++ + +K ++ + A+ + N D++ + + + TN D E A+ V
Sbjct: 312 IVGSLNKKDKYYLAANFIAFFNHDYRKIAELHLDSGWIPLDTNI----EDFECAMRTVFE 367
Query: 143 --FKDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEA 200
F+ + + FS++L +++ A ++ + P L+ ++L +EG+ P+ +++
Sbjct: 368 PIFEQPLEKIPFSKILLYLFNTARYFNMEIQPQLILLQKTLLYIEGIVRQLYPNLNLWKS 427
Query: 201 AYPFV 205
A PF+
Sbjct: 428 AQPFL 432
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 30/239 (12%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYT----SSGQIGFLDFGLLCRMERKHQFAML 97
L GV Q+ G HAD HPGN++ + + G+ LDFG++ + + +
Sbjct: 265 LARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGRYISLDFGIIGTLTESDKEYLA 324
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDAL---GEVEFKDGIPDVKFSR 154
+ V D++ + E V GT +LE A+ E F + ++
Sbjct: 325 QNFVAFFRRDYKRVAELHLESGWVPEGTRI----DELEGAIRTVCEPYFDRPLKEISLGM 380
Query: 155 VLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPF---------- 204
VL +++ + ++H + P L+ ++L ++EGL DP + A PF
Sbjct: 381 VLMRLFQTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWHTAKPFLEKWMVDQIG 440
Query: 205 ---VIQKLLTENSVATR------KILHSVVFNKKKEFQWQRLSLFLRVGATRKGLQQVI 254
+ Q+L E + ++LH + N+ + + + L L T + LQ +I
Sbjct: 441 PKKLFQQLKAEAPRYAKLLPELPRLLHDFLENRPADHRRELLELLAAQKRTNRLLQTII 499
>sp|P73577|Y889_SYNY3 Uncharacterized protein slr0889 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0889 PE=3 SV=1
Length = 408
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 1/138 (0%)
Query: 49 ATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 108
A QL G HADPHPGN+ Y + G++ +D G++ R++ + + + ++ IV+ D
Sbjct: 270 AFFQQLYVDGFFHADPHPGNIFYLADGRLALIDCGMVGRLDPRTRQLLTEMLLAIVDLDA 329
Query: 109 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLGKIWSIALKYHF 168
+ E+ N R+ +D E L + + + + FS V+ + IA
Sbjct: 330 KRCAQLTVELSESVGRVNFQRLEVDYERMLRKY-YDLSLSEFNFSEVVYEFLRIARVNKL 388
Query: 169 RMPPYYTLVLRSLASLEG 186
++P L + LA+LEG
Sbjct: 389 KVPACLGLYAKCLANLEG 406
>sp|Q5H616|UBIB_XANOR Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain KACC10331 / KXO85) GN=ubiB PE=3 SV=1
Length = 557
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 93/192 (48%), Gaps = 15/192 (7%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGF------LDFGLLCRMERKHQFA 95
L KGV Q+ HAD H GN+ S + LDFG++ ++ ++ Q+
Sbjct: 268 LAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYY 327
Query: 96 MLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA---LGEVEFKDGIPDVKF 152
+ + + I + D++ + E + + +R+ +LE A + E F + ++
Sbjct: 328 LAENFMAIFHKDYRRMAELHVEAGWM---PSNVRID-ELEAAARSVCEPYFTRPLSEISL 383
Query: 153 SRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTE 212
++VL K++ +A +Y + P L+ ++L ++EG+ DP + A P V++++L E
Sbjct: 384 AQVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARP-VLERILRE 442
Query: 213 NSVATRKILHSV 224
+ R++L +
Sbjct: 443 R-YSPRRVLREL 453
>sp|B2ST34|UBIB_XANOP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain PXO99A) GN=ubiB PE=3 SV=1
Length = 557
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 93/192 (48%), Gaps = 15/192 (7%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGF------LDFGLLCRMERKHQFA 95
L KGV Q+ HAD H GN+ S + LDFG++ ++ ++ Q+
Sbjct: 268 LAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYY 327
Query: 96 MLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA---LGEVEFKDGIPDVKF 152
+ + + I + D++ + E + + +R+ +LE A + E F + ++
Sbjct: 328 LAENFMAIFHKDYRRMAELHVEAGWM---PSNVRID-ELEAAARSVCEPYFTRPLSEISL 383
Query: 153 SRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTE 212
++VL K++ +A +Y + P L+ ++L ++EG+ DP + A P V++++L E
Sbjct: 384 AQVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARP-VLERILRE 442
Query: 213 NSVATRKILHSV 224
+ R++L +
Sbjct: 443 R-YSPRRVLREL 453
>sp|Q2P8Q0|UBIB_XANOM Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain MAFF 311018) GN=ubiB PE=3 SV=1
Length = 557
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 93/192 (48%), Gaps = 15/192 (7%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGF------LDFGLLCRMERKHQFA 95
L KGV Q+ HAD H GN+ S + LDFG++ ++ ++ Q+
Sbjct: 268 LAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYY 327
Query: 96 MLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA---LGEVEFKDGIPDVKF 152
+ + + I + D++ + E + + +R+ +LE A + E F + ++
Sbjct: 328 LAENFMAIFHKDYRRMAELHVEAGWM---PSNVRID-ELEAAARSVCEPYFTRPLSEISL 383
Query: 153 SRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTE 212
++VL K++ +A +Y + P L+ ++L ++EG+ DP + A P V++++L E
Sbjct: 384 AQVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARP-VLERILRE 442
Query: 213 NSVATRKILHSV 224
+ R++L +
Sbjct: 443 R-YSPRRVLREL 453
>sp|Q3BZ34|UBIB_XANC5 Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. vesicatoria (strain 85-10) GN=ubiB PE=3
SV=1
Length = 557
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 93/192 (48%), Gaps = 15/192 (7%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGF------LDFGLLCRMERKHQFA 95
L KGV Q+ HAD H GN+ S + LDFG++ ++ ++ Q+
Sbjct: 268 LAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYY 327
Query: 96 MLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA---LGEVEFKDGIPDVKF 152
+ + + I + D++ + E + + +R+ +LE A + E F + ++
Sbjct: 328 LAENFMAIFHKDYRRMAELHVEAGWM---PSNVRID-ELEAAARSVCEPYFTRPLSEISL 383
Query: 153 SRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTE 212
++VL K++ +A +Y + P L+ ++L ++EG+ DP + A P V++++L E
Sbjct: 384 AQVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARP-VLERILRE 442
Query: 213 NSVATRKILHSV 224
+ R++L +
Sbjct: 443 R-YSPRRVLREL 453
>sp|B0RLZ0|UBIB_XANCB Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain B100) GN=ubiB PE=3
SV=1
Length = 557
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 91/189 (48%), Gaps = 15/189 (7%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGF------LDFGLLCRMERKHQFA 95
L KGV Q+ HAD H GN+ S + LDFG++ ++ ++ Q+
Sbjct: 268 LAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERCLNPRFIALDFGIMGQLSQEDQYY 327
Query: 96 MLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA---LGEVEFKDGIPDVKF 152
+ + + I + D++ + E + + +R+ +LE A + E F + ++
Sbjct: 328 LAENFMAIFHKDYRRMAELHVEAGWM---PSNVRID-ELEAAARSVCEPYFTRPLSEISL 383
Query: 153 SRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTE 212
+ VL K++ +A +Y + P L+ ++L ++EG+ DP + A P V++++L E
Sbjct: 384 AEVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARP-VLERILRE 442
Query: 213 NSVATRKIL 221
+ R++L
Sbjct: 443 R-YSPRRVL 450
>sp|Q8PDW1|UBIB_XANCP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=ubiB PE=3 SV=1
Length = 557
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 91/189 (48%), Gaps = 15/189 (7%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGF------LDFGLLCRMERKHQFA 95
L KGV Q+ HAD H GN+ S + LDFG++ ++ ++ Q+
Sbjct: 268 LAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYY 327
Query: 96 MLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA---LGEVEFKDGIPDVKF 152
+ + + I + D++ + E + + +R+ +LE A + E F + ++
Sbjct: 328 LAENFMAIFHKDYRRMAELHVEAGWM---PSNVRID-ELEAAARSVCEPYFTRPLSEISL 383
Query: 153 SRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTE 212
+ VL K++ +A +Y + P L+ ++L ++EG+ DP + A P V++++L E
Sbjct: 384 AEVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARP-VLERILRE 442
Query: 213 NSVATRKIL 221
+ R++L
Sbjct: 443 R-YSPRRVL 450
>sp|Q4V052|UBIB_XANC8 Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain 8004) GN=ubiB PE=3
SV=1
Length = 557
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 91/189 (48%), Gaps = 15/189 (7%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGF------LDFGLLCRMERKHQFA 95
L KGV Q+ HAD H GN+ S + LDFG++ ++ ++ Q+
Sbjct: 268 LAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYY 327
Query: 96 MLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDA---LGEVEFKDGIPDVKF 152
+ + + I + D++ + E + + +R+ +LE A + E F + ++
Sbjct: 328 LAENFMAIFHKDYRRMAELHVEAGWM---PSNVRID-ELEAAARSVCEPYFTRPLSEISL 383
Query: 153 SRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTE 212
+ VL K++ +A +Y + P L+ ++L ++EG+ DP + A P V++++L E
Sbjct: 384 AEVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPKLDIWAVARP-VLERILRE 442
Query: 213 NSVATRKIL 221
+ R++L
Sbjct: 443 R-YSPRRVL 450
>sp|B8F6K1|UBIB_HAEPS Probable ubiquinone biosynthesis protein UbiB OS=Haemophilus
parasuis serovar 5 (strain SH0165) GN=ubiB PE=3 SV=1
Length = 549
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 18/181 (9%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAML 97
L +GV+ Q+ HAD HPGN+ + + Q +D G++ + + + +
Sbjct: 270 LAERGVQVFFTQVFRDSFFHADMHPGNIFVNPNHPENPQYIGIDCGIVGTLNQNDKRYLA 329
Query: 98 ASIVHIVNGDWQ--SLVHSLTEMDVVRPGTNTLRVTMD-LEDALGEV---EFKDGIPDVK 151
S V N D++ +L+H V G +D E+A EV F + ++
Sbjct: 330 ESFVAFFNRDYRRVALMH-------VESGWTPADTDIDAFEEAFREVCEPIFAKPLSEIS 382
Query: 152 FSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLT 211
F VL ++++A K++ + P L+ ++L +EGL P ++ A PF +Q L
Sbjct: 383 FGHVLLNLFTVARKFNMEVQPQLVLLQKTLLYIEGLGRQVYPQLDLWQTAKPF-LQDWLN 441
Query: 212 E 212
E
Sbjct: 442 E 442
>sp|C4L962|UBIB_TOLAT Probable ubiquinone biosynthesis protein UbiB OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=ubiB PE=3 SV=1
Length = 543
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 6/182 (3%)
Query: 29 DRQKLDAKWRLLDLV-NKGVEATLVQLLETGILHADPHPGNL----RYTSSGQIGFLDFG 83
DR L+A L L+ +GVE Q+ HAD HPGN+ + Q +D G
Sbjct: 251 DRAALEANGTDLKLLAERGVEVFFTQVFRDSFFHADMHPGNVFVSYEHPHDPQWIGIDCG 310
Query: 84 LLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEF 143
++ + R+ + + + + N D++ + + V P T L L + F
Sbjct: 311 IVGTLNRQDKRYLAENFLAFFNRDYRKVAELHVQSGWVPPDTKVEEFESALRTVLEPI-F 369
Query: 144 KDGIPDVKFSRVLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYP 203
+ ++ F +VL +++ A +++ + P L+ ++L +EGL P ++ A P
Sbjct: 370 AKPLAEISFGQVLLNLFNTARRFNMHVQPQLVLLQKTLLYIEGLGRHLYPQLDLWQTAKP 429
Query: 204 FV 205
F+
Sbjct: 430 FL 431
>sp|B0U2R2|UBIB_XYLFM Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M12) GN=ubiB PE=3 SV=1
Length = 552
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 99/219 (45%), Gaps = 31/219 (14%)
Query: 1 MEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGIL 60
+E M G P+D I+L S +D + L +KG+ Q+
Sbjct: 239 LERMYG-IPSDDIALLDASGIDRKA----------------LSSKGIRVFYTQVFRDNFF 281
Query: 61 HADPHPGNL------RYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHS 114
HAD H GN+ S+ + LDFG++ ++ +K Q+ + + + I + D++ +
Sbjct: 282 HADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAEL 341
Query: 115 LTEMDVVRPGTNTLRVTMDLEDA---LGEVEFKDGIPDVKFSRVLGKIWSIALKYHFRMP 171
E + +R+ +LE A + E F + + + VL K++ +A +Y +
Sbjct: 342 HVEAGWI---PQHVRIE-ELEAAARSVCEPYFTRPLSQISLAEVLMKLFHVARRYQLTLQ 397
Query: 172 PYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLL 210
P L+ ++L ++EG+ DP + A P V++++L
Sbjct: 398 PQLILLQKTLLNIEGVGRQLDPELDIWVVARP-VLERIL 435
>sp|A9BP42|UBIB_DELAS Probable ubiquinone biosynthesis protein UbiB OS=Delftia
acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1
Length = 521
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 5/175 (2%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGN----LRYTSSGQIGFLDFGLLCRMERKHQFAML 97
L GV Q+ G HAD HPGN L + G+ LDFG++ + + +
Sbjct: 265 LARDGVTIFFTQVFRDGFFHADMHPGNIMVSLEPETFGRYISLDFGIVGTLTEYDKEYLA 324
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLG 157
+ D++ + E V P T + + A+ E F + ++ VL
Sbjct: 325 QNFTAFFRRDYKRVAELHIESGWVPPSTRVDELEAAIR-AVCEPYFDRPLAEISLGMVLM 383
Query: 158 KIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTE 212
+++ + ++ + P L+ ++L ++EGL DP+ + A PF+ + +L +
Sbjct: 384 RLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDPNLDLWSTAKPFLEKWMLDQ 438
>sp|A0KEF8|UBIB_AERHH Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=ubiB PE=3 SV=1
Length = 546
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 7/169 (4%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQ-----IGFLDFGLLCRMERKHQFAM 96
L +GVE Q+ HAD HPGN+ + IG +D G++ + R+ + +
Sbjct: 266 LAERGVEVFFTQVFRDSFFHADMHPGNIFVSYEHPENPLWIG-IDCGIVGTLNREDKRYL 324
Query: 97 LASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVL 156
+ + N D++ + E V P T + L + F+ + ++ F VL
Sbjct: 325 AENFLAFFNRDYRRVAELHVESGWVPPDTKVDEFEFAIRTVLEPI-FEKPLSEISFGHVL 383
Query: 157 GKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 205
+++ A +++ ++ P L+ ++L +EGL P ++ A P++
Sbjct: 384 LNLFNTARRFNMQVQPQLVLLQKTLLYVEGLGRQLYPQLDLWQTAKPYL 432
>sp|A1TTA2|UBIB_ACIAC Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax
citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1
Length = 522
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 5/175 (2%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNLRYT----SSGQIGFLDFGLLCRMERKHQFAML 97
L GV Q+ G HAD HPGN++ + S G+ LDFG++ + + +
Sbjct: 265 LARDGVTIFFTQVFRDGFFHADMHPGNIQVSLEPGSFGRYISLDFGIVGSLTEFDKEYLA 324
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRVLG 157
+ D++ + E V P + A+ E F + ++ VL
Sbjct: 325 QNFTAFFRRDYKRVAELHVESGWV-PADTRINELESAIRAVCEPYFDRPLKEISLGMVLM 383
Query: 158 KIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFVIQKLLTE 212
+++ + ++H + P L+ ++L ++EGL DP + A PF+ + +L +
Sbjct: 384 RLFQTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDPELDLWSTAKPFLEKWMLDQ 438
>sp|B5RFM6|UBIB_SALG2 Probable ubiquinone biosynthesis protein UbiB OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=ubiB PE=3
SV=1
Length = 546
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 78/171 (45%), Gaps = 11/171 (6%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAML 97
L +GV+ Q+ HAD HPGN+ + + Q +D G++ + ++ + +
Sbjct: 267 LAERGVKVFFTQVFRDSFFHADMHPGNIFVSHEHPENPQYIGIDCGIVGSLNKEDKRYLA 326
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDAL---GEVEFKDGIPDVKFSR 154
+ + N D++ + + V P TN D E A+ E F+ + ++ F
Sbjct: 327 ENFIAFFNRDYRKVAELHVDSGWVPPDTNV----EDFEFAIRTVCEPIFEKPLAEISFGH 382
Query: 155 VLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 205
VL +++ A +++ + P L+ ++L +EG+ P ++ A PF+
Sbjct: 383 VLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFL 433
>sp|Q6DAQ5|UBIB_ERWCT Probable ubiquinone biosynthesis protein UbiB OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=ubiB PE=3 SV=1
Length = 546
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 77/171 (45%), Gaps = 11/171 (6%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAML 97
L +GV+ Q+ HAD HPGN+ + Q +D G++ + ++ + +
Sbjct: 267 LAERGVQVFFTQVFRDSFFHADMHPGNIFISYDHPEDPQYIGIDCGIVGSLNKEDKRYLA 326
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDAL---GEVEFKDGIPDVKFSR 154
+ + N D++ + + V P TN D E A+ E F+ + ++ F
Sbjct: 327 ENFIAFFNRDYRKVAELHVDSGWVPPDTNV----ADFEFAIRTVCEPIFEKPLAEISFGH 382
Query: 155 VLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 205
VL +++ A +++ + P L+ ++L +EG+ P ++ A PF+
Sbjct: 383 VLLNLFNTARRFNMEVQPQLVLLQKTLLYIEGVGRQLYPQLDLWKTAKPFL 433
>sp|B5QW75|UBIB_SALEP Probable ubiquinone biosynthesis protein UbiB OS=Salmonella
enteritidis PT4 (strain P125109) GN=ubiB PE=3 SV=1
Length = 546
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 78/171 (45%), Gaps = 11/171 (6%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAML 97
L +GV+ Q+ HAD HPGN+ + + Q +D G++ + ++ + +
Sbjct: 267 LAERGVKVFFTQVFRDSFFHADMHPGNIFVSHEHPENPQYIGIDCGIVGSLNKEDKRYLA 326
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDAL---GEVEFKDGIPDVKFSR 154
+ + N D++ + + V P TN D E A+ E F+ + ++ F
Sbjct: 327 ENFIAFFNRDYRKVAELHVDSGWVPPDTNV----EDFEFAIRTVCEPIFEKPLAEISFGH 382
Query: 155 VLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 205
VL +++ A +++ + P L+ ++L +EG+ P ++ A PF+
Sbjct: 383 VLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFL 433
>sp|P0A197|UBIB_SALTY Probable ubiquinone biosynthesis protein UbiB OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=ubiB PE=3 SV=1
Length = 546
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 78/171 (45%), Gaps = 11/171 (6%)
Query: 42 LVNKGVEATLVQLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAML 97
L +GV+ Q+ HAD HPGN+ + + Q +D G++ + ++ + +
Sbjct: 267 LAERGVKVFFTQVFRDSFFHADMHPGNIFVSHEHPENPQYIGIDCGIVGSLNKEDKRYLA 326
Query: 98 ASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDAL---GEVEFKDGIPDVKFSR 154
+ + N D++ + + V P TN D E A+ E F+ + ++ F
Sbjct: 327 ENFIAFFNRDYRKVAELHVDSGWVPPDTNV----EDFEFAIRTVCEPIFEKPLAEISFGH 382
Query: 155 VLGKIWSIALKYHFRMPPYYTLVLRSLASLEGLAIAGDPHFKTFEAAYPFV 205
VL +++ A +++ + P L+ ++L +EG+ P ++ A PF+
Sbjct: 383 VLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFL 433
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,974,762
Number of Sequences: 539616
Number of extensions: 6148190
Number of successful extensions: 16063
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 15779
Number of HSP's gapped (non-prelim): 235
length of query: 444
length of database: 191,569,459
effective HSP length: 121
effective length of query: 323
effective length of database: 126,275,923
effective search space: 40787123129
effective search space used: 40787123129
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)