Query 013372
Match_columns 444
No_of_seqs 41 out of 43
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 03:11:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4467 Uncharacterized conser 100.0 1E-138 3E-143 1035.2 18.3 385 1-442 1-404 (557)
2 PF10151 DUF2359: Uncharacteri 100.0 1.1E-37 2.3E-42 319.5 10.2 164 261-442 2-169 (469)
3 COG0362 Gnd 6-phosphogluconate 50.7 9.5 0.00021 41.2 1.9 79 143-232 369-447 (473)
4 PF14617 CMS1: U3-containing 9 39.7 17 0.00036 36.2 1.6 26 201-226 82-107 (252)
5 PF15387 DUF4611: Domain of un 35.3 27 0.00059 30.8 2.0 12 98-109 68-79 (96)
6 KOG2002 TPR-containing nuclear 32.6 21 0.00046 41.9 1.2 28 100-127 906-933 (1018)
7 PF05327 RRN3: RNA polymerase 28.9 1.4E+02 0.003 32.5 6.5 156 159-346 51-208 (563)
8 PF11595 DUF3245: Protein of u 26.1 41 0.00088 31.6 1.7 7 116-122 140-146 (149)
9 PF03000 NPH3: NPH3 family; I 19.3 1.8E+02 0.004 29.2 4.8 93 299-404 116-238 (258)
10 smart00530 HTH_XRE Helix-turn- 18.3 1.3E+02 0.0029 19.5 2.6 45 124-170 7-51 (56)
No 1
>KOG4467 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.5e-138 Score=1035.21 Aligned_cols=385 Identities=55% Similarity=0.803 Sum_probs=368.1
Q ss_pred CCchhHHHHHHhhhhhhhhccCCCCCCCCCCceEeeecccccCCCCCCCCCCC-------CCCCCCCCChhhHHHHHHhH
Q 013372 1 MDENSALIEQILREDELEYRGLSRSYNKDEEWQTVSYKKRHSKQPNSDNSLPD-------RRPDDGATTSDVFRAIEEHS 73 (444)
Q Consensus 1 md~~~~~~~~~~~~~~~~~t~~~~~~~~dhGWqkVt~~Kr~rkq~~~~~~~~~-------ngtl~~~~~~~vf~~~e~~a 73 (444)
||++++.++++|++.+ +.+||||+||+||||+|||+++|++++. |||++||+ .|||+|||+++
T Consensus 1 mdpiesveynGFet~n---------gn~dhgWkkvvyPkr~rkqk~adqa~a~gg~t~~~ngt~~ngg-~nvfrSLeeqA 70 (557)
T KOG4467|consen 1 MDPIESVEYNGFETLN---------GNDDHGWKKVVYPKRNRKQKPADQAAALGGVTLIPNGTLSNGG-GNVFRSLEEQA 70 (557)
T ss_pred CChHHhhhhccccccC---------CCcccceeeeecccccccccchhhhhhcCCceeccCccccCCC-cchhhcccHHH
Confidence 9999999999999887 5599999999999999999999998764 88886655 89999999999
Q ss_pred HHHHhcccCCcccC------CCCCCCC-CCC-CCCCCcchhh----hhhhHHhhhhccCCCCCCCcccHHHHHhcCCcch
Q 013372 74 EERRRRMSVPQVAT------PVTGEGS-KRH-SDEDDDSDAE----VSAAVVEVKKVKQKKPKKPKVTVSEAAARIDAGD 141 (444)
Q Consensus 74 e~r~~~~~~~~~~a------~~~~~~s-~~~-~dd~~d~d~~----~~~~~~e~kk~K~kk~kkpKvS~aeAAa~Id~~d 141 (444)
|+||+||.+++..+ +..|++| .++ +|+++|+||+ --.+.+|+||||+||.||||||+.|||.+|||.+
T Consensus 71 e~r~~riLaak~~~~~~d~~~~~rsk~rsnGyGd~GyDFd~sd~eia~lk~eevkkpkpkk~kkPkvsL~Eaa~kidpln 150 (557)
T KOG4467|consen 71 ETRLDRILAAKPNSDTADVSDGGRSKWRSNGYGDIGYDFDDSDSEIAVLKLEEVKKPKPKKSKKPKVSLQEAACKIDPLN 150 (557)
T ss_pred HHHHHHHHhcCCCccccccccccchhhccccCCccccccCCccchhheeeHHHhcccCcccccCCcccHHHHHhccCHHH
Confidence 99999999999886 6677877 333 7888888776 3467999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccccchhhHhHhhhHHhhhhccccccccchhhhccccccchhhccCCCCCchhhhhhhhhhhccCChhh
Q 013372 142 LGAFLVDITGSYEKQEDIQLMRFADYFGRAFASVSSSQFPWLKTFRESTVAKMVDIPLSHVPEDVYKMSVDWLNQRSFDA 221 (444)
Q Consensus 142 La~fL~~is~sY~~~p~iqLmRFaDYFgrafS~V~svqfpW~kmfkEs~l~k~idvPL~hIpe~Vykts~dWI~q~s~~a 221 (444)
|.+||++.+ +||+|||||||||++|||||+|+++
T Consensus 151 l~AFlveas----------------------------------------------~pL~Hipepvyktsadwin~rPiEa 184 (557)
T KOG4467|consen 151 LLAFLVEAS----------------------------------------------SPLSHIPEPVYKTSADWINQRPIEA 184 (557)
T ss_pred HHHHhcCCC----------------------------------------------CccccCCcchhhccCCccccCCHHH
Confidence 999999876 7999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhcccCCCCCccccccccCccchHHHHHHHHHHHhcChhHHHhhhhccccCCCCCCCCCCchhHH
Q 013372 222 LGSFVLWSLDSILADLASHQGTGKSSKKVVQQASSKSQVAIFVVLAMVLRRKPDVLISLLPIKRENPKYQGQDKLPVTAW 301 (444)
Q Consensus 222 L~~FVlW~l~~IL~dl~~~~gg~kg~k~~~q~~s~ksqVaifV~LAmvLR~kP~vL~~vlptl~~~~~yqg~dkLPv~vW 301 (444)
|++||+|.++||+.|+..||||.||||||.||++|||||+|||+||||||++||.|+++||++|+|+||||||||||+||
T Consensus 185 lgafvlw~~dCil~Dla~qqgg~kggkKg~qQs~Sksqvaifvalamvlr~kPdaltn~LptlrenpKyqgQdkLpvtvw 264 (557)
T KOG4467|consen 185 LGAFVLWLTDCILVDLASQQGGRKGGKKGLQQSSSKSQVAIFVALAMVLRQKPDALTNSLPTLRENPKYQGQDKLPVTVW 264 (557)
T ss_pred HHHHHHHHHHHHhccHHHHhhhhhhcccccccccchhHHHHHHHHHHHHHhccHHHHHhhHHHHhCccccCcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccchhHHHHHHHHhhhhcccCCCCCCcchhhHHHHHHHHHhcCccchhhhhhhhhhcCCcccCchhHHHHHHHh
Q 013372 302 IIAQTAQGDLAVGLYMWVRVLLPMLSGKSSCNPQARDSILQLVERILSLPKARTILINGAVKKGERLVPPSALEVLMRVT 381 (444)
Q Consensus 302 miaQAsqGDL~vGly~WahnLLP~v~gks~~nPqsrDliLQlvE~ILs~pkArtiLvngavrkgerLipP~sfe~LlR~t 381 (444)
|||||||||++||+|+|+|||||+|..|+ |||||||+||||||+||.+|||||||+|||||+|||||||++||||+|+|
T Consensus 265 mmaqasQgDi~vglyswahnLlpVvg~k~-cnPqsRdLiLqLVe~il~npkaRtilvngAvrkGeRLipppsFeil~rlt 343 (557)
T KOG4467|consen 265 MMAQASQGDIVVGLYSWAHNLLPVVGPKS-CNPQSRDLILQLVEAILLNPKARTILVNGAVRKGERLIPPPSFEILVRLT 343 (557)
T ss_pred HhhccccCCeeeeehhhhcccccccCCCC-CCchHHHHHHHHHHHHHcCchHhHHhhhhhhhcCccccCCCcchhhhhcc
Confidence 99999999999999999999999999888 79999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchhhhhHHHhhhhhhHhhhcCCCCcHHHHHHHHHHHHHHHHHhccCCccCCCCC
Q 013372 382 FPAPSLRIKATERFEAIYPILKEVALAGSPGSKAMKQVAQHILTIAIKAAGEGLINSSRPP 442 (444)
Q Consensus 382 FP~sSaRvKATeRFeAiYP~lKevALaG~~gskamkqv~qqi~~~slk~age~n~~la~e~ 442 (444)
||+||||||||||||||||+||||+|+|.||||+||||+||||+|++|.+||+||.|++|+
T Consensus 344 fPASsArvKaterfeaiYplLkEv~lagapGSkamkqVtqqiftfAlk~age~np~Lakea 404 (557)
T KOG4467|consen 344 FPASSARVKATERFEAIYPLLKEVSLAGAPGSKAMKQVTQQIFTFALKHAGETNPFLAKEA 404 (557)
T ss_pred cccHHHHHHHHHHHHhhhHHHHhhhccCCCchHHHHHHHHHHHHHHHHHcCCCCchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986
No 2
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=100.00 E-value=1.1e-37 Score=319.46 Aligned_cols=164 Identities=38% Similarity=0.591 Sum_probs=144.7
Q ss_pred HHHHHHHHHHhcChhHHHhhhhcccc--CCCCCCCCCCchhHHHHHHhhccchhHHHHHHHHhhhhcccCCCCCCcchhh
Q 013372 261 AIFVVLAMVLRRKPDVLISLLPIKRE--NPKYQGQDKLPVTAWIIAQTAQGDLAVGLYMWVRVLLPMLSGKSSCNPQARD 338 (444)
Q Consensus 261 aifV~LAmvLR~kP~vL~~vlptl~~--~~~yqg~dkLPv~vWmiaQAsqGDL~vGly~WahnLLP~v~gks~~nPqsrD 338 (444)
+..+.|+||+|++|+++++.||++.+ |++++.+++.++|+|||+||+||||++||++|.|+|||++.+|+. + +
T Consensus 2 Gyki~LQ~i~~~~P~i~~~nL~k~~~lr~s~qnr~~~~LsilWaigQag~~DL~vGLkvW~~~mLP~l~~K~~-s----~ 76 (469)
T PF10151_consen 2 GYKICLQAIAQSKPDICTNNLPKYAELRNSYQNRPNICLSILWAIGQAGQGDLSVGLKVWQHLMLPVLELKSY-S----P 76 (469)
T ss_pred cHHHHHHHHHccCcHHHHHhHHHHHHHHHhhhcCCchhHHHHHHHhcccccchHHHHHHHHHhhhhhccCCCc-c----h
Confidence 45789999999999999999999765 667778889999999999999999999999999999999998883 3 4
Q ss_pred HHHHHHHHHhcCccchhhhhhhhhhcCCcccCchhHHHHHHHhCCCCCccchh-hhhHHHhhhhhhHhhhcCCCCcHHHH
Q 013372 339 SILQLVERILSLPKARTILINGAVKKGERLVPPSALEVLMRVTFPAPSLRIKA-TERFEAIYPILKEVALAGSPGSKAMK 417 (444)
Q Consensus 339 liLQlvE~ILs~pkArtiLvngavrkgerLipP~sfe~LlR~tFP~sSaRvKA-TeRFeAiYP~lKevALaG~~gskamk 417 (444)
.++|+||+||+ +|+++++|+|+|||..|+++||+|||++|+|+|+ ||||+++||.|||+|++|.|||.+
T Consensus 77 ~vi~yleriL~--------~~~~~~~g~~li~p~~F~~ll~~~f~~~~~~~k~l~e~l~~~yp~LK~la~~~~p~s~~-- 146 (469)
T PF10151_consen 77 YVIQYLERILS--------LHGNVTKGERLIPPQEFFPLLRLTFPPSNSLSKALQERLEAIYPRLKELAFAGKPGSTL-- 146 (469)
T ss_pred HHHHHHHHHHh--------cCcccccCcCCCCHHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHhcCCchhHH--
Confidence 88999999994 8888999999999999999999999999999997 899999999999999999999954
Q ss_pred HHHHHHHHHHHHHhcc-CCccCCCCC
Q 013372 418 QVAQHILTIAIKAAGE-GLINSSRPP 442 (444)
Q Consensus 418 qv~qqi~~~slk~age-~n~~la~e~ 442 (444)
+++|+.-+..+++ .|+++.+|.
T Consensus 147 ---~~~f~~~l~~~~~~~~~~~~~E~ 169 (469)
T PF10151_consen 147 ---HTYFPSFLSKATPECPPELKKEL 169 (469)
T ss_pred ---HHHHHHHHHHhcccCCHHHHHHH
Confidence 3566665555555 555777764
No 3
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=50.66 E-value=9.5 Score=41.15 Aligned_cols=79 Identities=14% Similarity=0.265 Sum_probs=64.2
Q ss_pred HHHHHhhhhhccccchhhHhHhhhHHhhhhccccccccchhhhccccccchhhccCCCCCchhhhhhhhhhhccCChhhh
Q 013372 143 GAFLVDITGSYEKQEDIQLMRFADYFGRAFASVSSSQFPWLKTFRESTVAKMVDIPLSHVPEDVYKMSVDWLNQRSFDAL 222 (444)
Q Consensus 143 a~fL~~is~sY~~~p~iqLmRFaDYFgrafS~V~svqfpW~kmfkEs~l~k~idvPL~hIpe~Vykts~dWI~q~s~~aL 222 (444)
+.||.+|.+.|...|+..=+=+.+||.-.+- ..+=.|+++.-.+ + .+-||-|..-++..+++.+..+.|
T Consensus 369 s~FL~~I~~af~~~p~l~nLl~~pyF~~~~~---~~~~~~R~vV~~a-----~---~~giP~P~~ssalsy~Dsyr~~~l 437 (473)
T COG0362 369 SKFLDKITDAFDENPELANLLLAPYFKSILE---EYQQSLRRVVAYA-----V---EAGIPVPAFSSALSYYDSYRTARL 437 (473)
T ss_pred HHHHHHHHHHHhcCcchhhhhcCHHHHHHHH---HHHHHHHHHHHHH-----H---hcCCCchHHHHHHHHHHHhhhccc
Confidence 5799999999999999999999999976666 4688899887543 2 245788899999999999999998
Q ss_pred hHHHHHHHHH
Q 013372 223 GSFVLWSLDS 232 (444)
Q Consensus 223 ~~FVlW~l~~ 232 (444)
.+.++=+-..
T Consensus 438 paNLiQAQRD 447 (473)
T COG0362 438 PANLIQAQRD 447 (473)
T ss_pred cHHHHHHHHH
Confidence 8866544443
No 4
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=39.70 E-value=17 Score=36.22 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=22.2
Q ss_pred CCchhhhhhhhhhhccCChhhhhHHH
Q 013372 201 HVPEDVYKMSVDWLNQRSFDALGSFV 226 (444)
Q Consensus 201 hIpe~Vykts~dWI~q~s~~aL~~FV 226 (444)
+||+.-+.-+.+|-..|..+.|++|+
T Consensus 82 ~i~~s~f~dt~~~~~~r~l~nL~~fL 107 (252)
T PF14617_consen 82 YIPESAFLDTSSFTKPRTLDNLPSFL 107 (252)
T ss_pred ccCHHhcccccccCCCcccchHHHHH
Confidence 58888888888999989999999984
No 5
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=35.30 E-value=27 Score=30.84 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=7.6
Q ss_pred CCCCCcchhhhh
Q 013372 98 SDEDDDSDAEVS 109 (444)
Q Consensus 98 ~dd~~d~d~~~~ 109 (444)
+|||||++||.|
T Consensus 68 g~deddaede~n 79 (96)
T PF15387_consen 68 GDDEDDAEDENN 79 (96)
T ss_pred CccccccccccC
Confidence 666666666644
No 6
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=32.55 E-value=21 Score=41.87 Aligned_cols=28 Identities=43% Similarity=0.545 Sum_probs=12.4
Q ss_pred CCCcchhhhhhhHHhhhhccCCCCCCCc
Q 013372 100 EDDDSDAEVSAAVVEVKKVKQKKPKKPK 127 (444)
Q Consensus 100 d~~d~d~~~~~~~~e~kk~K~kk~kkpK 127 (444)
+++++|+++....++.||-|+||++|||
T Consensus 906 ~~~~~~~e~kk~g~~kkKd~kkrkr~~k 933 (1018)
T KOG2002|consen 906 DDSDSDGERKKGGKRKKKDKKKRKRKPK 933 (1018)
T ss_pred CcCcccchhhccCccccccccccccCCc
Confidence 5555555544333333333344444443
No 7
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=28.88 E-value=1.4e+02 Score=32.52 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=90.2
Q ss_pred hhHhHhhhHHhhhhccccccccchhhhccccccchhhccCCCCCchhhhhhhhhhhccCChhhhhHHHHHHHHHHHHhhh
Q 013372 159 IQLMRFADYFGRAFASVSSSQFPWLKTFRESTVAKMVDIPLSHVPEDVYKMSVDWLNQRSFDALGSFVLWSLDSILADLA 238 (444)
Q Consensus 159 iqLmRFaDYFgrafS~V~svqfpW~kmfkEs~l~k~idvPL~hIpe~Vykts~dWI~q~s~~aL~~FVlW~l~~IL~dl~ 238 (444)
-+|.+++.=+...-+..+.. | +.=|..++.++--..++.+++.=.++|...-. +-+.|+--+++.+...+.
T Consensus 51 ~~l~~~L~~L~~~Vs~Ld~~-~-------~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvs-a~~~yl~~vl~~LV~~f~ 121 (563)
T PF05327_consen 51 SQLIRWLKALSSCVSLLDSS-C-------KQLVEAILSLNWLGRDEDFVEAYIQFLINLVS-AQPKYLSPVLSMLVKNFI 121 (563)
T ss_dssp HHHHHHHHHHHHGGGGG-SC-C-------HHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHH-H-GGGHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHhhhH-H-------HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhcc
Confidence 36666665555554433322 2 11233456676667788888888888877643 447788888899888888
Q ss_pred cccCCCCCc--cccccccCccchHHHHHHHHHHHhcChhHHHhhhhccccCCCCCCCCCCchhHHHHHHhhccchhHHHH
Q 013372 239 SHQGTGKSS--KKVVQQASSKSQVAIFVVLAMVLRRKPDVLISLLPIKRENPKYQGQDKLPVTAWIIAQTAQGDLAVGLY 316 (444)
Q Consensus 239 ~~~gg~kg~--k~~~q~~s~ksqVaifV~LAmvLR~kP~vL~~vlptl~~~~~yqg~dkLPv~vWmiaQAsqGDL~vGly 316 (444)
++....... -.......-...| --+|--+||--|-.-..++|.|..+-=|...++ - -+-
T Consensus 122 p~~~~~~~~~~~~~~~~~~~~~~v--H~~L~~Il~lvP~s~~~L~~~l~~~FP~~~~~~---~--------------~~~ 182 (563)
T PF05327_consen 122 PPPSSIAEWPGCPPEKRREIYERV--HDALQKILRLVPTSPSFLIPILVQNFPHKRKSK---D--------------EHV 182 (563)
T ss_dssp S-HHHHHH---------------H--HHHHHHHHHH-GGGHHHHHHHHHHTS--TTS-H---H--------------HHH
T ss_pred CCCccccccchhhhhhhhhhHHHH--HHHHHHHHHHcCCCHHHHHHHHHHcCcCCCCCh---H--------------HHH
Confidence 765331111 0001111112223 367888999999999999999875443442221 1 245
Q ss_pred HHHHhhhhcccCCCCCCcchhhHHHHHHHH
Q 013372 317 MWVRVLLPMLSGKSSCNPQARDSILQLVER 346 (444)
Q Consensus 317 ~WahnLLP~v~gks~~nPqsrDliLQlvE~ 346 (444)
.+++|||=+.. .-|+-|..||++|-.
T Consensus 183 ~Yv~NlL~l~~----Y~P~L~~~Il~lIi~ 208 (563)
T PF05327_consen 183 NYVRNLLRLTE----YCPELRSDILSLIIE 208 (563)
T ss_dssp HHHHHHHHHHC----C-GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHc----chHHHHHHHHHHHHH
Confidence 68999999973 349999999998743
No 8
>PF11595 DUF3245: Protein of unknown function (DUF3245); InterPro: IPR021641 This is a family of proteins conserved in fungi. The function is not known, and there is no S. cerevisiae member.
Probab=26.07 E-value=41 Score=31.58 Aligned_cols=7 Identities=57% Similarity=0.487 Sum_probs=2.6
Q ss_pred hhccCCC
Q 013372 116 KKVKQKK 122 (444)
Q Consensus 116 kk~K~kk 122 (444)
+|.+.+|
T Consensus 140 ~kk~~~K 146 (149)
T PF11595_consen 140 GKKKSKK 146 (149)
T ss_pred hcccccc
Confidence 3333333
No 9
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=19.25 E-value=1.8e+02 Score=29.18 Aligned_cols=93 Identities=25% Similarity=0.336 Sum_probs=0.0
Q ss_pred hHHHHHHhhccchhHHHHHHHHhhhhcccCCCCCCcchhhHHHHHHHHHhcC-----------------ccchhhhhhhh
Q 013372 299 TAWIIAQTAQGDLAVGLYMWVRVLLPMLSGKSSCNPQARDSILQLVERILSL-----------------PKARTILINGA 361 (444)
Q Consensus 299 ~vWmiaQAsqGDL~vGly~WahnLLP~v~gks~~nPqsrDliLQlvE~ILs~-----------------pkArtiLvnga 361 (444)
|.+.+-||+-+|| |+|. .+.+...=--.|+++++|+.+|+. +...++.-=|-
T Consensus 116 Ig~qLd~AtldDL----------LIP~-~~~~~~t~yDVd~V~riv~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~Vak 184 (258)
T PF03000_consen 116 IGSQLDQATLDDL----------LIPS-SPSGEDTLYDVDLVQRIVEHFLSQEEEAGEEEESESESGSSPSSSSLVKVAK 184 (258)
T ss_pred HHHHhhhccHHHh----------cccC-CCCcccchhhHHHHHHHHHHHHhcccccccccccccccccCCChHHHHHHHH
Q ss_pred hhcC-------CcccCchhHHHHHHHhCCCCCccc------hhhhhHHHhhhhhhH
Q 013372 362 VKKG-------ERLVPPSALEVLMRVTFPAPSLRI------KATERFEAIYPILKE 404 (444)
Q Consensus 362 vrkg-------erLipP~sfe~LlR~tFP~sSaRv------KATeRFeAiYP~lKe 404 (444)
+.+| +.-+||.-|..|-. ++| .++|. +|-.-|....|.|.|
T Consensus 185 LvD~YLaEiA~D~~L~~~kF~~Lae-~lP-~~aR~~hD~LYrAID~YLk~Hp~ls~ 238 (258)
T PF03000_consen 185 LVDGYLAEIAPDPNLKPSKFVALAE-ALP-DSARPSHDGLYRAIDIYLKAHPGLSE 238 (258)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHH-HCC-HhhhhccchHHHHHHHHHHHcccCCH
No 10
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=18.25 E-value=1.3e+02 Score=19.49 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=0.0
Q ss_pred CCCcccHHHHHhcCCcchHHHHHHhhhhhccccchhhHhHhhhHHhh
Q 013372 124 KKPKVTVSEAAARIDAGDLGAFLVDITGSYEKQEDIQLMRFADYFGR 170 (444)
Q Consensus 124 kkpKvS~aeAAa~Id~~dLa~fL~~is~sY~~~p~iqLmRFaDYFgr 170 (444)
++..+|..+.|..++.+ ...+..+..-....+.-.+.++.++|+.
T Consensus 7 ~~~~~s~~~la~~~~i~--~~~i~~~~~~~~~~~~~~~~~i~~~~~~ 51 (56)
T smart00530 7 EEKGLTQEELAEKLGVS--RSTLSRIENGKRKPSLETLKKLAKALGV 51 (56)
T ss_pred HHcCCCHHHHHHHhCCC--HHHHHHHHCCCCCCCHHHHHHHHHHhCC
Done!