Query 013372
Match_columns 444
No_of_seqs 41 out of 43
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 09:20:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gwg_A 6-phosphogluconate dehy 29.2 9.9 0.00034 39.0 -0.5 77 143-230 371-447 (484)
2 3tj1_A RNA polymerase I-specif 25.2 2.9E+02 0.0098 29.9 9.7 116 192-344 139-255 (649)
3 4g9j_C Synthetic peptide, seri 19.8 35 0.0012 22.7 0.9 18 121-138 7-24 (26)
4 2pgd_A 6-phosphogluconate dehy 13.9 25 0.00084 35.3 -1.4 78 144-232 370-447 (482)
5 2wp7_A PPPDE peptidase domain- 13.8 1.6E+02 0.0054 26.6 4.0 73 135-241 77-155 (168)
6 1ho8_A Vacuolar ATP synthase s 12.0 6.5E+02 0.022 26.2 8.4 123 204-359 76-207 (480)
7 3aa0_C 21MER peptide from leuc 11.0 67 0.0023 21.4 0.5 15 37-51 9-23 (26)
8 2zyd_A 6-phosphogluconate dehy 10.4 45 0.0015 33.7 -0.8 72 144-226 381-452 (480)
9 2p4q_A 6-phosphogluconate dehy 9.8 54 0.0018 33.4 -0.5 72 144-226 378-449 (497)
10 1b6a_A Methionine aminopeptida 9.3 67 0.0023 33.2 0.0 7 230-236 200-206 (478)
No 1
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=29.18 E-value=9.9 Score=38.97 Aligned_cols=77 Identities=14% Similarity=0.375 Sum_probs=59.6
Q ss_pred HHHHHhhhhhccccchhhHhHhhhHHhhhhccccccccchhhhccccccchhhccCCCCCchhhhhhhhhhhccCChhhh
Q 013372 143 GAFLVDITGSYEKQEDIQLMRFADYFGRAFASVSSSQFPWLKTFRESTVAKMVDIPLSHVPEDVYKMSVDWLNQRSFDAL 222 (444)
Q Consensus 143 a~fL~~is~sY~~~p~iqLmRFaDYFgrafS~V~svqfpW~kmfkEs~l~k~idvPL~hIpe~Vykts~dWI~q~s~~aL 222 (444)
+.||.+|.+.|...|+..-+-+.|||...+.. .+=.|+++....-. ..||-|+.-+|..+++.+--+.|
T Consensus 371 s~~l~~i~~a~~~~~~l~~ll~~~~f~~~~~~---~~~~~r~vv~~a~~--------~gip~P~~s~al~y~~~~r~~~l 439 (484)
T 4gwg_A 371 SVFLGKIKDAFDRNPELQNLLLDDFFKSAVEN---CQDSWRRAVSTGVQ--------AGIPMPCFTTALSFYDGYRHEML 439 (484)
T ss_dssp BHHHHHHHHHHHHCTTCSCGGGSHHHHHHHHH---HHHHHHHHHHHHHH--------HTCCCHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHhCCCchhhhcCHHHHHHHHH---HHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhccCCC
Confidence 47999999999999999888899999888873 46689988764321 35777899999998888777777
Q ss_pred hHHHHHHH
Q 013372 223 GSFVLWSL 230 (444)
Q Consensus 223 ~~FVlW~l 230 (444)
.+-++=+.
T Consensus 440 panliqaq 447 (484)
T 4gwg_A 440 PASLIQAQ 447 (484)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 76444333
No 2
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=25.20 E-value=2.9e+02 Score=29.91 Aligned_cols=116 Identities=9% Similarity=0.045 Sum_probs=86.0
Q ss_pred chhhcc-CCCCCchhhhhhhhhhhccCChhhhhHHHHHHHHHHHHhhhcccCCCCCccccccccCccchHHHHHHHHHHH
Q 013372 192 AKMVDI-PLSHVPEDVYKMSVDWLNQRSFDALGSFVLWSLDSILADLASHQGTGKSSKKVVQQASSKSQVAIFVVLAMVL 270 (444)
Q Consensus 192 ~k~idv-PL~hIpe~Vykts~dWI~q~s~~aL~~FVlW~l~~IL~dl~~~~gg~kg~k~~~q~~s~ksqVaifV~LAmvL 270 (444)
..++.+ |.-..++.+++.=+.||... ..+.+.|+-=+++.|...+.++.. .++-+=-+|-.+|
T Consensus 139 ~aIL~~~~W~~r~~~~v~~Y~~FL~~L-vSa~~~yl~~vl~mLV~~F~~~~~---------------~~~~~H~~L~~Il 202 (649)
T 3tj1_A 139 QSIINFEKWWELPPHTLSKYIYFIKIL-CSSIPKWWQDVSMILVSCFILPIK---------------QTVCHHDMLKYFL 202 (649)
T ss_dssp HHHHTCTTGGGSCHHHHHHHHHHHHHH-HHHCGGGHHHHHHHHHHGGGSCHH---------------HHHHHHHHHHHHH
T ss_pred HHHhCCchhccCCHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhccCCCc---------------ccHHHHHHHHHHH
Confidence 346677 77778889999999998877 356667777788888877765311 1223456889999
Q ss_pred hcChhHHHhhhhccccCCCCCCCCCCchhHHHHHHhhccchhHHHHHHHHhhhhcccCCCCCCcchhhHHHHHH
Q 013372 271 RRKPDVLISLLPIKRENPKYQGQDKLPVTAWIIAQTAQGDLAVGLYMWVRVLLPMLSGKSSCNPQARDSILQLV 344 (444)
Q Consensus 271 R~kP~vL~~vlptl~~~~~yqg~dkLPv~vWmiaQAsqGDL~vGly~WahnLLP~v~gks~~nPqsrDliLQlv 344 (444)
|--|-.-..++|.|..+--|....+ ..+-.++||||=+.. .-|+-|..||+||
T Consensus 203 ~lvP~s~~~L~~iL~~~FP~~~~s~-----------------~~~~~Yv~NLLrl~~----Y~PeL~~~Il~LI 255 (649)
T 3tj1_A 203 RMIPSSMGFIDTYLAKFFPNKNDTR-----------------RKLVNYTSNLLKLRG----YCSELGFQIWSLL 255 (649)
T ss_dssp HHCGGGHHHHHHHHHHTCCCTTSCH-----------------HHHHHHHHHHHHHHH----HCGGGHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHhCCCCCCch-----------------hHHHHHHHHHHHHHh----hchHHHHHHHHHH
Confidence 9999999999999876555544332 235588999999974 6899999999986
No 3
>4g9j_C Synthetic peptide, serine/threonine-protein phosphatase PP1-alpha Ca subunit; activating peptide; 3.10A {Homo sapiens}
Probab=19.78 E-value=35 Score=22.70 Aligned_cols=18 Identities=44% Similarity=0.549 Sum_probs=14.0
Q ss_pred CCCCCCcccHHHHHhcCC
Q 013372 121 KKPKKPKVTVSEAAARID 138 (444)
Q Consensus 121 kk~kkpKvS~aeAAa~Id 138 (444)
.|.|...|+++|||.-|.
T Consensus 7 rkrknarvtfaeaaeii~ 24 (26)
T 4g9j_C 7 RKRKNARVTFAEAAEIIX 24 (26)
T ss_pred cccccceeeHHHhhhHhh
Confidence 345567899999998775
No 4
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Probab=13.94 E-value=25 Score=35.31 Aligned_cols=78 Identities=14% Similarity=0.350 Sum_probs=59.0
Q ss_pred HHHHhhhhhccccchhhHhHhhhHHhhhhccccccccchhhhccccccchhhccCCCCCchhhhhhhhhhhccCChhhhh
Q 013372 144 AFLVDITGSYEKQEDIQLMRFADYFGRAFASVSSSQFPWLKTFRESTVAKMVDIPLSHVPEDVYKMSVDWLNQRSFDALG 223 (444)
Q Consensus 144 ~fL~~is~sY~~~p~iqLmRFaDYFgrafS~V~svqfpW~kmfkEs~l~k~idvPL~hIpe~Vykts~dWI~q~s~~aL~ 223 (444)
.||.+|.+.|...|+..=+.+.+||...+. ..|=.|+++..+.- . ..||-|+.-+|..+++.+.-+.|.
T Consensus 370 ~~l~~i~~a~~~~~~l~~l~~~~~~~~~~~---~~~~~~r~~v~~a~---~-----~g~p~p~~s~al~~~~~~~~~~~~ 438 (482)
T 2pgd_A 370 VFLGKIKDAFDRNPGLQNLLLDDFFKSAVE---NCQDSWRRAISTGV---Q-----AGIPMPCFTTALSFYDGYRHAMLP 438 (482)
T ss_dssp THHHHHHHHHHHCTTCSCGGGSHHHHHHHH---HHHHHHHHHHHHHH---H-----HTCCCHHHHHHHHHHHHHHCSSCT
T ss_pred HHHHHHHHHHhcCCChhhhhcCHHHHHHHH---HHHHHHHHHHHHHH---H-----cCCCHHHHHHHHHHHHhcccCCcc
Confidence 599999999999999888889999988877 34556888776421 1 356778999999999888877777
Q ss_pred HHHHHHHHH
Q 013372 224 SFVLWSLDS 232 (444)
Q Consensus 224 ~FVlW~l~~ 232 (444)
+=++=+...
T Consensus 439 ~~l~qa~rd 447 (482)
T 2pgd_A 439 ANLIQAQRD 447 (482)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHh
Confidence 744434333
No 5
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=13.83 E-value=1.6e+02 Score=26.64 Aligned_cols=73 Identities=11% Similarity=0.260 Sum_probs=51.2
Q ss_pred hcCCcchHHHHHHhhhhh-ccccchhhHh-H----hhhHHhhhhccccccccchhhhccccccchhhccCCCCCchhhhh
Q 013372 135 ARIDAGDLGAFLVDITGS-YEKQEDIQLM-R----FADYFGRAFASVSSSQFPWLKTFRESTVAKMVDIPLSHVPEDVYK 208 (444)
Q Consensus 135 a~Id~~dLa~fL~~is~s-Y~~~p~iqLm-R----FaDYFgrafS~V~svqfpW~kmfkEs~l~k~idvPL~hIpe~Vyk 208 (444)
..++++++.+||.+++.. |... .-.|+ | |.|.|-..|.+ .+||
T Consensus 77 T~~~~~~~~~~l~~l~~~~~~g~-~Y~Ll~~NCNhFs~~l~~~L~g-------------------------k~IP----- 125 (168)
T 2wp7_A 77 TEVTEEIFLEYLSSLGESLFRGE-AYNLFEHNCNTFSNEVAQFLTG-------------------------RKIP----- 125 (168)
T ss_dssp ECCCHHHHHHHHHHHHTTTCSGG-GCBTTTBSHHHHHHHHHHHHHS-------------------------CCCC-----
T ss_pred ccCCHHHHHHHHHHhhhccCCcc-cCchhhhccchhHHHHHHHhcC-------------------------CCCc-----
Confidence 456788999999999987 7543 33343 2 66666666553 2466
Q ss_pred hhhhhhccCChhhhhHHHHHHHHHHHHhhhccc
Q 013372 209 MSVDWLNQRSFDALGSFVLWSLDSILADLASHQ 241 (444)
Q Consensus 209 ts~dWI~q~s~~aL~~FVlW~l~~IL~dl~~~~ 241 (444)
+||+..+-..|+.=+.-.+.++|..+..+-
T Consensus 126 ---~wInrl~~~vl~tp~G~~l~~~l~~~~~~~ 155 (168)
T 2wp7_A 126 ---SYITDLPSEVLSTPFGQALRPFLDSIQIQP 155 (168)
T ss_dssp ---HHHHTHHHHHHTSHHHHHHHHHHTTCCCCC
T ss_pred ---HHHHHHHHHHhcCcHHHHHHHHHHHHhhCC
Confidence 788888888888777778888887766543
No 6
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=11.97 E-value=6.5e+02 Score=26.25 Aligned_cols=123 Identities=13% Similarity=0.153 Sum_probs=73.5
Q ss_pred hhhhhhhhhhhccCChhhhhHHHHHHHHHHHHhhhcccCCCCCccccccccCccchHHHHHHHHHHHhcChhHHHhhhhc
Q 013372 204 EDVYKMSVDWLNQRSFDALGSFVLWSLDSILADLASHQGTGKSSKKVVQQASSKSQVAIFVVLAMVLRRKPDVLISLLPI 283 (444)
Q Consensus 204 e~Vykts~dWI~q~s~~aL~~FVlW~l~~IL~dl~~~~gg~kg~k~~~q~~s~ksqVaifV~LAmvLR~kP~vL~~vlpt 283 (444)
...+++-++=++.-+-+..-.|||-.++.+|.+-. ..++.+.+| ...|+....++-.
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~----------------~~~~~~~~f-------~~~~~~~~~l~~~ 132 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDK----------------YGDDTVKFF-------QEDPKQLEQLFDV 132 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSS----------------SSHHHHHHH-------HHCTTHHHHHHHH
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCc----------------chHHHHHHH-------hhCcccchHHHHH
Confidence 45667777888888888999999999999998721 011223333 2223333211110
Q ss_pred cccCCCCCCCCCCchhHH-----HHHHhhc--cchhHHHHH--HHHhhhhcccCCCCCCcchhhHHHHHHHHHhcCccch
Q 013372 284 KRENPKYQGQDKLPVTAW-----IIAQTAQ--GDLAVGLYM--WVRVLLPMLSGKSSCNPQARDSILQLVERILSLPKAR 354 (444)
Q Consensus 284 l~~~~~yqg~dkLPv~vW-----miaQAsq--GDL~vGly~--WahnLLP~v~gks~~nPqsrDliLQlvE~ILs~pkAr 354 (444)
. ....|.++.+.= .+.|++. ++..-+++. |.-++|--. .+..++|...|++..+|+.+..|
T Consensus 133 ~-----~~~dd~~~ll~a~~l~~ll~~~~~~~~~~l~~l~~~~~~~~~L~~~-----~~~~~~~i~v~~L~~Ll~~~~~R 202 (480)
T 1ho8_A 133 S-----LKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNI-----EQMDTCYVCIRLLQELAVIPEYR 202 (480)
T ss_dssp C-----SCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCT-----TCHHHHHHHHHHHHHHHTSHHHH
T ss_pred H-----hcccchHHHHHHHHHHHHHhccCCccHhHHHHHhhhHHHHHHhccc-----cCCchHHHHHHHHHHHhcchhHH
Confidence 0 012333332111 1122222 567778888 877777321 23456889999999999999999
Q ss_pred hhhhh
Q 013372 355 TILIN 359 (444)
Q Consensus 355 tiLvn 359 (444)
.+.++
T Consensus 203 ~~f~~ 207 (480)
T 1ho8_A 203 DVIWL 207 (480)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 98875
No 7
>3aa0_C 21MER peptide from leucine-rich repeat-containing 16A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Mus musculus}
Probab=11.04 E-value=67 Score=21.39 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=11.7
Q ss_pred ecccccCCCCCCCCC
Q 013372 37 YKKRHSKQPNSDNSL 51 (444)
Q Consensus 37 ~~Kr~rkq~~~~~~~ 51 (444)
.|||.+||+|..+..
T Consensus 9 rpkr~kkqqps~~tv 23 (26)
T 3aa0_C 9 RPKRNKKQQPTQAXX 23 (26)
T ss_pred CcchhhccCCccccc
Confidence 589999999876543
No 8
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=10.37 E-value=45 Score=33.65 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=54.9
Q ss_pred HHHHhhhhhccccchhhHhHhhhHHhhhhccccccccchhhhccccccchhhccCCCCCchhhhhhhhhhhccCChhhhh
Q 013372 144 AFLVDITGSYEKQEDIQLMRFADYFGRAFASVSSSQFPWLKTFRESTVAKMVDIPLSHVPEDVYKMSVDWLNQRSFDALG 223 (444)
Q Consensus 144 ~fL~~is~sY~~~p~iqLmRFaDYFgrafS~V~svqfpW~kmfkEs~l~k~idvPL~hIpe~Vykts~dWI~q~s~~aL~ 223 (444)
.||.+|.+.|...|+..=+-+.|||...+.. .+=.|+++..+.- . ..||-|+.-+|..+++.+.-+.|.
T Consensus 381 ~~l~~i~~a~~~~~~l~~l~~~~~f~~~~~~---~~~~~r~~v~~a~---~-----~gvp~p~~s~al~~~~~~~~~~~~ 449 (480)
T 2zyd_A 381 QFLQKITDACAENPQIANLLLAPYFKQIADD---YQQALRDVVAYAV---Q-----NGIPVPTFSAAVAYYDSYRAAVLP 449 (480)
T ss_dssp THHHHHHHHHHHCTTCSCGGGSHHHHHHHHH---HHHHHHHHHHHHH---H-----HTCCCHHHHHHHHHHHHHTCSSCT
T ss_pred HHHHHHHHHHhcCCChHhhhcCHHHHHHHHH---HHHHHHHHHHHHH---H-----cCCCHHHHHHHHHHHHhcccCCch
Confidence 5899999999999998888899999888773 4445888776421 1 356778999999888886667666
Q ss_pred HHH
Q 013372 224 SFV 226 (444)
Q Consensus 224 ~FV 226 (444)
+=+
T Consensus 450 ~~l 452 (480)
T 2zyd_A 450 ANL 452 (480)
T ss_dssp HHH
T ss_pred hhH
Confidence 633
No 9
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=9.81 E-value=54 Score=33.37 Aligned_cols=72 Identities=21% Similarity=0.422 Sum_probs=55.1
Q ss_pred HHHHhhhhhccccchhhHhHhhhHHhhhhccccccccchhhhccccccchhhccCCCCCchhhhhhhhhhhccCChhhhh
Q 013372 144 AFLVDITGSYEKQEDIQLMRFADYFGRAFASVSSSQFPWLKTFRESTVAKMVDIPLSHVPEDVYKMSVDWLNQRSFDALG 223 (444)
Q Consensus 144 ~fL~~is~sY~~~p~iqLmRFaDYFgrafS~V~svqfpW~kmfkEs~l~k~idvPL~hIpe~Vykts~dWI~q~s~~aL~ 223 (444)
.||.+|.+.|...|+..=+-+.|||...+.. .+=.|+++..+.- . ..||-|+.-+|..+++.+.-+.|.
T Consensus 378 ~~l~~i~~a~~~~~~l~~l~~~~~f~~~~~~---~~~~~r~~v~~a~---~-----~gvp~P~~s~aL~~~~~~~~~~~~ 446 (497)
T 2p4q_A 378 VFLGQITKAYREEPDLENLLFNKFFADAVTK---AQSGWRKSIALAT---T-----YGIPTPAFSTALSFYDGYRSERLP 446 (497)
T ss_dssp HHHHHHHHHHHHCTTCSCGGGSHHHHHHHHH---HHHHHHHHHHHHH---H-----HTCCCHHHHHHHHHHHHHTCSSCT
T ss_pred HHHHHHHHHHhcCCChhhhhcCHHHHHHHHH---HHHHHHHHHHHHH---H-----cCCCHHHHHHHHHHHHhcccCCch
Confidence 5899999999999998888899999888773 4445888776521 1 356778999999888887667776
Q ss_pred HHH
Q 013372 224 SFV 226 (444)
Q Consensus 224 ~FV 226 (444)
+=+
T Consensus 447 a~l 449 (497)
T 2p4q_A 447 ANL 449 (497)
T ss_dssp HHH
T ss_pred hHH
Confidence 633
No 10
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A*
Probab=9.35 E-value=67 Score=33.19 Aligned_cols=7 Identities=14% Similarity=0.188 Sum_probs=2.9
Q ss_pred HHHHHHh
Q 013372 230 LDSILAD 236 (444)
Q Consensus 230 l~~IL~d 236 (444)
++.++.+
T Consensus 200 le~~~~~ 206 (478)
T 1b6a_A 200 LEDCSRK 206 (478)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
Done!