Query 013372
Match_columns 444
No_of_seqs 41 out of 43
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 09:21:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013372.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013372hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q5za_ a.196.1.1 (A:) Invasio 17.7 79 0.0057 26.2 5.0 102 323-439 16-131 (145)
2 d1q5da_ a.104.1.1 (A:) Cytochr 17.5 9.7 0.00071 32.4 -0.8 43 257-299 355-397 (401)
3 d1r4wa_ c.47.1.13 (A:) Mitocho 14.0 13 0.00096 29.4 -0.8 29 281-309 182-215 (221)
4 d1x4pa1 a.217.1.1 (A:8-60) Arg 12.4 41 0.003 24.0 1.6 24 338-361 2-28 (53)
5 d1utga_ a.101.1.1 (A:) Uterogl 12.0 49 0.0036 24.7 2.0 20 332-351 48-67 (70)
6 d1ccda_ a.101.1.1 (A:) Clara c 9.5 67 0.0049 24.3 2.0 20 333-352 51-70 (77)
7 d1q60a_ d.288.1.1 (A:) General 8.6 1.6E+02 0.011 23.1 4.0 30 409-438 1-31 (99)
8 d1x3zb1 a.189.1.1 (B:253-309) 8.3 82 0.006 22.5 1.9 22 263-284 10-31 (57)
9 d1pn5a1 a.77.1.5 (A:59-151) NA 7.9 87 0.0063 23.5 2.1 76 140-224 7-84 (93)
10 d2jg0a1 a.102.1.9 (A:37-547) P 7.7 1.5E+02 0.011 27.6 4.1 46 261-306 125-182 (511)
No 1
>d1q5za_ a.196.1.1 (A:) Invasion protein A (SipA) , C-terminal actin binding domain {Salmonella typhimurium [TaxId: 90371]}
Probab=17.65 E-value=79 Score=26.19 Aligned_cols=102 Identities=21% Similarity=0.298 Sum_probs=60.8
Q ss_pred hhcccCCCCCCcchhhHHHHHHHHHhcCccchhhhhhhhhhcCCcccCchhHHHHHHHhCCCCCccchhh----------
Q 013372 323 LPMLSGKSSCNPQARDSILQLVERILSLPKARTILINGAVKKGERLVPPSALEVLMRVTFPAPSLRIKAT---------- 392 (444)
Q Consensus 323 LP~v~gks~~nPqsrDliLQlvE~ILs~pkArtiLvngavrkgerLipP~sfe~LlR~tFP~sSaRvKAT---------- 392 (444)
+|.|..-.|-.-..|+..|..|.+-|..-.+.+.-| | .+||.|----.| |.|+|..
T Consensus 16 iPsvt~m~smhf~Are~fLgvvRkALEPdastPf~v----R--------RaFd~LRaeILp--nD~~ks~alkaqcs~i~ 81 (145)
T d1q5za_ 16 VPSVTNMHSMHFDARETFLGVIRKALEPDTSTPFPV----R--------RAFDGLRAEILP--NDTIKSAALKAQCSDID 81 (145)
T ss_dssp SCCHHHHTCTTCCHHHHHHHHHHHHTCBCTTSCHHH----H--------HHHHHHHHHHSC--SSHHHHHHHHHHHTTGG
T ss_pred cchHHHHHHHhhhHHHHHHHHHHhhcCcccCCchHH----H--------HHHHHHHHhcCC--cchhhHHHHHHHHhccC
Confidence 344433333444788999999999993333333322 2 256666544455 4444421
Q ss_pred --hhHHHhhhhhhHhhhcCCCCcHHHHHHHHHHHHHH--HHHhccCCccCC
Q 013372 393 --ERFEAIYPILKEVALAGSPGSKAMKQVAQHILTIA--IKAAGEGLINSS 439 (444)
Q Consensus 393 --eRFeAiYP~lKevALaG~~gskamkqv~qqi~~~s--lk~age~n~~la 439 (444)
.|...---+||| +++|.|--+++..+|.|+--=+ ++++||.|+.|+
T Consensus 82 ~~~eLk~k~~tLke-~it~HPqrekLae~Alqf~REAgLt~lk~etdylls 131 (145)
T d1q5za_ 82 KHPELKAKMETLKE-VITHHPQKEKLAEIALQFAREAGLTRLKGETDYVLS 131 (145)
T ss_dssp GCHHHHHHHHHHHH-HHHTCTTHHHHHHHHHHHHHHHCTTTTGGGSCHHHH
T ss_pred CChHHHHHHHHHHH-HHhcCchHHHHHHHHHHHHHHcCCCcccCcccHHHH
Confidence 233334567888 7899998888887777765433 456667776653
No 2
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum [TaxId: 56]}
Probab=17.53 E-value=9.7 Score=32.42 Aligned_cols=43 Identities=16% Similarity=0.375 Sum_probs=31.5
Q ss_pred cchHHHHHHHHHHHhcChhHHHhhhhccccCCCCCCCCCCchh
Q 013372 257 KSQVAIFVVLAMVLRRKPDVLISLLPIKRENPKYQGQDKLPVT 299 (444)
Q Consensus 257 ksqVaifV~LAmvLR~kP~vL~~vlptl~~~~~yqg~dkLPv~ 299 (444)
=+.+.+.++||.+||+=|++=..--|..+..+-++|...|||+
T Consensus 355 lA~~e~~~~la~ll~rf~~~~l~~~~~~~~~~~~r~~~~l~v~ 397 (401)
T d1q5da_ 355 LARLEAEIAVGTIFRRFPEMKLKETPVFGYHPAFRNIESLNVI 397 (401)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEECSCCEECCCSSBCCEEECEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCeECCCCeecCCCcccCcccceEE
Confidence 4567788999999999887322223445567788899999975
No 3
>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=14.02 E-value=13 Score=29.36 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=22.4
Q ss_pred hhcccc-----CCCCCCCCCCchhHHHHHHhhcc
Q 013372 281 LPIKRE-----NPKYQGQDKLPVTAWIIAQTAQG 309 (444)
Q Consensus 281 lptl~~-----~~~yqg~dkLPv~vWmiaQAsqG 309 (444)
.||+.- +..|-|+|+|+.+.+.+.++-+|
T Consensus 182 vPtfvi~~~~~~e~f~G~Drl~~l~~~L~~~~~~ 215 (221)
T d1r4wa_ 182 LPTTVAHVDGKTYMLFGSDRMELLAYLLGEKWMG 215 (221)
T ss_dssp SCEEEEEETTEEEEEESTTCHHHHHHHHTCCCCC
T ss_pred CCEEEEccCCCcceeecccCHHHHHHHHhcccCC
Confidence 466542 35699999999999999887555
No 4
>d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.39 E-value=41 Score=23.97 Aligned_cols=24 Identities=42% Similarity=0.634 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhc---Cccchhhhhhhh
Q 013372 338 DSILQLVERILS---LPKARTILINGA 361 (444)
Q Consensus 338 DliLQlvE~ILs---~pkArtiLvnga 361 (444)
|+|-|||.+|.+ .||-|+.+-|.+
T Consensus 2 ~tIeqlV~~ii~G~LspkeR~~~k~~P 28 (53)
T d1x4pa1 2 GTIDQLVKRVIEGSLSPKERTLLKEDP 28 (53)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHSG
T ss_pred chHHHHHHHHHcCCCCHHHHHHhhcCC
Confidence 789999999963 789898887754
No 5
>d1utga_ a.101.1.1 (A:) Uteroglobin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=12.04 E-value=49 Score=24.68 Aligned_cols=20 Identities=30% Similarity=0.605 Sum_probs=17.3
Q ss_pred CCcchhhHHHHHHHHHhcCc
Q 013372 332 CNPQARDSILQLVERILSLP 351 (444)
Q Consensus 332 ~nPqsrDliLQlvE~ILs~p 351 (444)
-.++.++-|++|+|+|+..|
T Consensus 48 Lt~edK~~i~~liekI~~Sp 67 (70)
T d1utga_ 48 LPQTTRENIMKLTEKIVKSP 67 (70)
T ss_dssp SCHHHHHHHHHHHHHHHTSG
T ss_pred CCHHHHHHHHHHHHHHhcCc
Confidence 37889999999999999665
No 6
>d1ccda_ a.101.1.1 (A:) Clara cell 17kDa protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.49 E-value=67 Score=24.34 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=17.2
Q ss_pred CcchhhHHHHHHHHHhcCcc
Q 013372 333 NPQARDSILQLVERILSLPK 352 (444)
Q Consensus 333 nPqsrDliLQlvE~ILs~pk 352 (444)
.|+.++-|++|+|+|+..|-
T Consensus 51 teedK~~i~~liekI~~Spl 70 (77)
T d1ccda_ 51 PQETRINIVKLTEKILTSPL 70 (77)
T ss_dssp CHHHHHHHHHHHHHHTTSTT
T ss_pred CHhhHHHHHHHHHHHHcCcc
Confidence 78899999999999996553
No 7
>d1q60a_ d.288.1.1 (A:) General transcription factor II-I {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.65 E-value=1.6e+02 Score=23.07 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=24.7
Q ss_pred CCCCcHHHHHHHHHHHHHHH-HHhccCCccC
Q 013372 409 GSPGSKAMKQVAQHILTIAI-KAAGEGLINS 438 (444)
Q Consensus 409 G~~gskamkqv~qqi~~~sl-k~age~n~~l 438 (444)
|++||--+++-.|++|.... ++.|-+.++.
T Consensus 1 gssgsSgLR~~VeelF~~ky~eALG~~~~V~ 31 (99)
T d1q60a_ 1 GSSGSSGLKQKVENLFNEKCGEALGLKQAVK 31 (99)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHTCSSCCC
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhCCCCcee
Confidence 78999999999999999887 6667766553
No 8
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.31 E-value=82 Score=22.50 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=15.5
Q ss_pred HHHHHHHHhcChhHHHhhhhcc
Q 013372 263 FVVLAMVLRRKPDVLISLLPIK 284 (444)
Q Consensus 263 fV~LAmvLR~kP~vL~~vlptl 284 (444)
++.|-=|+-.+|++|.-++..|
T Consensus 10 l~~lr~vvsg~peal~plle~l 31 (57)
T d1x3zb1 10 LLSLRQVVSGNPEALAPLLENI 31 (57)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHH
Confidence 4556667777888877777766
No 9
>d1pn5a1 a.77.1.5 (A:59-151) NALP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.94 E-value=87 Score=23.49 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=51.6
Q ss_pred chHHHHHHhhhhhccccchhhHhHhhhHHh-hhhccccccccchhhhccccccchhhccCCCCCchh-hhhhhhhhhccC
Q 013372 140 GDLGAFLVDITGSYEKQEDIQLMRFADYFG-RAFASVSSSQFPWLKTFRESTVAKMVDIPLSHVPED-VYKMSVDWLNQR 217 (444)
Q Consensus 140 ~dLa~fL~~is~sY~~~p~iqLmRFaDYFg-rafS~V~svqfpW~kmfkEs~l~k~idvPL~hIpe~-Vykts~dWI~q~ 217 (444)
..|..||++++ +-+|-+|=-+.. ..+.. ..-++||.++=+- .-.+++|.=+.|-|+. ..+++++=+.+.
T Consensus 7 ~~L~~~Le~L~-------~~ElkkFK~~L~~~~l~~-~~~~Ip~~~le~a-d~~dLa~lLv~~y~~~~A~~vt~~il~~m 77 (93)
T d1pn5a1 7 GRLACYLEFLK-------KEELKEFQLLLANKAHSR-SSSGETPAQPEKT-SGMEVASYLVAQYGEQRAWDLALHTWEQM 77 (93)
T ss_dssp TTHHHHHHHCC-------HHHHHHHHHHHHHHCTTC-CSSCSCSSCCCCC-SHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc-------HHHHHHHHHHHccccccc-CCCCCCHHHHhhC-CHHHHHHHHHHHCCHHHHHHHHHHHHHHc
Confidence 57899999998 788899988774 44431 1247899666554 5567788777777764 666666666665
Q ss_pred ChhhhhH
Q 013372 218 SFDALGS 224 (444)
Q Consensus 218 s~~aL~~ 224 (444)
.-..||.
T Consensus 78 n~~dLae 84 (93)
T d1pn5a1 78 GLRSLCA 84 (93)
T ss_dssp TCHHHHH
T ss_pred CHHHHHH
Confidence 5555553
No 10
>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA {Escherichia coli [TaxId: 562]}
Probab=7.66 E-value=1.5e+02 Score=27.60 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcChhHHHhhhhcc----c--------cCCCCCCCCCCchhHHHHHHh
Q 013372 261 AIFVVLAMVLRRKPDVLISLLPIK----R--------ENPKYQGQDKLPVTAWIIAQT 306 (444)
Q Consensus 261 aifV~LAmvLR~kP~vL~~vlptl----~--------~~~~yqg~dkLPv~vWmiaQA 306 (444)
..|++|.++....+++...++..+ . .+..|.+.++-|+++||+.+-
T Consensus 125 Syfi~lGLl~~~~~~~a~~ml~nf~~~i~~~G~IPng~r~yy~~rSQPPlla~mv~~~ 182 (511)
T d2jg0a1 125 SYFTMLGLAESGHWDKVADMVANFAHEIDTYGHIPNGNRSYYLSRSQPPFFALMVELL 182 (511)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSSCCSBSBGGGTTCCCSCCHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCccHHHHHHHHHH
Confidence 468999998888888666555442 1 346889999999998887644
Done!