Query 013373
Match_columns 444
No_of_seqs 398 out of 3728
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 03:11:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764 5'-AMP-activated prote 100.0 6.5E-30 1.4E-34 253.0 26.7 343 14-443 36-379 (381)
2 COG2524 Predicted transcriptio 99.8 9.4E-18 2E-22 151.4 13.6 125 275-424 168-292 (294)
3 COG2524 Predicted transcriptio 99.7 8.6E-17 1.9E-21 145.2 12.6 125 198-342 167-291 (294)
4 COG3448 CBS-domain-containing 99.6 7.1E-16 1.5E-20 141.7 9.6 128 277-424 243-373 (382)
5 COG3620 Predicted transcriptio 99.6 5.5E-15 1.2E-19 124.0 13.0 137 256-424 49-185 (187)
6 PRK14869 putative manganese-de 99.6 3.1E-15 6.8E-20 157.4 10.9 299 44-421 68-391 (546)
7 COG3448 CBS-domain-containing 99.6 1.1E-14 2.3E-19 134.0 11.5 132 200-343 242-373 (382)
8 cd04619 CBS_pair_6 The CBS dom 99.6 5.7E-14 1.2E-18 116.3 14.1 112 293-420 2-113 (114)
9 cd04603 CBS_pair_KefB_assoc Th 99.6 5.6E-14 1.2E-18 115.8 13.3 109 293-420 2-110 (111)
10 PRK14869 putative manganese-de 99.6 9.5E-14 2.1E-18 146.2 18.3 195 203-423 68-304 (546)
11 cd04618 CBS_pair_5 The CBS dom 99.6 4.3E-14 9.4E-19 114.0 12.1 95 293-420 2-97 (98)
12 PRK15094 magnesium/cobalt effl 99.6 7.7E-14 1.7E-18 134.6 15.5 132 277-431 65-197 (292)
13 cd04641 CBS_pair_28 The CBS do 99.6 1.2E-13 2.5E-18 115.5 14.5 119 293-421 2-120 (120)
14 cd04630 CBS_pair_17 The CBS do 99.5 2.8E-13 6.1E-18 112.0 14.6 111 293-420 2-113 (114)
15 cd04617 CBS_pair_4 The CBS dom 99.5 2.6E-13 5.6E-18 113.1 14.3 114 293-420 2-117 (118)
16 COG3620 Predicted transcriptio 99.5 8.4E-14 1.8E-18 116.9 11.0 134 188-342 51-184 (187)
17 TIGR03520 GldE gliding motilit 99.5 3E-13 6.6E-18 136.6 16.6 130 277-431 189-319 (408)
18 cd04641 CBS_pair_28 The CBS do 99.5 3.5E-13 7.6E-18 112.6 13.5 117 216-339 2-119 (120)
19 cd04600 CBS_pair_HPP_assoc Thi 99.5 4E-13 8.6E-18 112.6 13.8 114 293-420 3-123 (124)
20 cd04608 CBS_pair_PALP_assoc Th 99.5 1.6E-13 3.4E-18 115.8 10.8 113 293-422 3-124 (124)
21 cd04607 CBS_pair_NTP_transfera 99.5 6.6E-13 1.4E-17 109.5 14.3 110 293-420 3-112 (113)
22 cd04623 CBS_pair_10 The CBS do 99.5 8E-13 1.7E-17 108.6 14.6 111 293-420 2-112 (113)
23 cd04593 CBS_pair_EriC_assoc_ba 99.5 7.2E-13 1.6E-17 109.7 14.2 111 293-420 2-114 (115)
24 PRK07807 inosine 5-monophospha 99.5 6E-13 1.3E-17 136.0 16.6 121 278-426 88-208 (479)
25 cd04642 CBS_pair_29 The CBS do 99.5 3.4E-13 7.4E-18 113.7 12.0 123 293-421 2-126 (126)
26 cd04803 CBS_pair_15 The CBS do 99.5 7.4E-13 1.6E-17 110.6 14.0 115 293-421 2-122 (122)
27 cd04615 CBS_pair_2 The CBS dom 99.5 8.6E-13 1.9E-17 108.7 13.9 111 293-420 2-112 (113)
28 cd04631 CBS_pair_18 The CBS do 99.5 7.8E-13 1.7E-17 111.0 13.9 115 293-421 2-125 (125)
29 cd04639 CBS_pair_26 The CBS do 99.5 7.1E-13 1.5E-17 108.8 13.3 109 293-420 2-110 (111)
30 cd04618 CBS_pair_5 The CBS dom 99.5 5.2E-13 1.1E-17 107.7 11.8 94 217-339 3-97 (98)
31 cd04596 CBS_pair_DRTGG_assoc T 99.5 8.6E-13 1.9E-17 108.0 13.2 105 293-420 3-107 (108)
32 cd04603 CBS_pair_KefB_assoc Th 99.5 7.2E-13 1.6E-17 109.2 12.8 108 217-339 3-110 (111)
33 KOG1764 5'-AMP-activated prote 99.5 1.3E-12 2.9E-17 129.9 16.9 199 54-343 161-360 (381)
34 cd04643 CBS_pair_30 The CBS do 99.5 1E-12 2.3E-17 108.6 13.6 112 293-421 2-116 (116)
35 cd04627 CBS_pair_14 The CBS do 99.5 6.6E-13 1.4E-17 111.4 12.4 113 293-419 2-121 (123)
36 cd04582 CBS_pair_ABC_OpuCA_ass 99.5 1.1E-12 2.4E-17 106.7 13.5 104 293-420 2-105 (106)
37 cd04605 CBS_pair_MET2_assoc Th 99.5 1.7E-12 3.8E-17 106.3 14.6 107 293-420 3-109 (110)
38 cd04801 CBS_pair_M50_like This 99.5 6.1E-13 1.3E-17 109.9 11.9 111 293-420 2-113 (114)
39 cd04621 CBS_pair_8 The CBS dom 99.5 1.4E-12 3E-17 111.7 14.4 113 293-420 2-134 (135)
40 cd04626 CBS_pair_13 The CBS do 99.5 1.5E-12 3.2E-17 107.0 14.0 109 293-420 2-110 (111)
41 PRK11543 gutQ D-arabinose 5-ph 99.5 6.2E-13 1.3E-17 130.9 13.9 121 278-421 196-318 (321)
42 PRK10892 D-arabinose 5-phospha 99.5 7.9E-13 1.7E-17 130.4 14.4 123 277-421 200-323 (326)
43 cd04629 CBS_pair_16 The CBS do 99.5 1.1E-12 2.4E-17 108.2 13.0 112 293-420 2-113 (114)
44 cd04624 CBS_pair_11 The CBS do 99.5 2E-12 4.4E-17 106.2 14.4 110 293-420 2-111 (112)
45 COG2905 Predicted signal-trans 99.5 1E-12 2.2E-17 131.2 14.6 182 218-424 69-271 (610)
46 cd04619 CBS_pair_6 The CBS dom 99.5 1.4E-12 3.1E-17 107.8 13.2 111 217-339 3-113 (114)
47 cd04583 CBS_pair_ABC_OpuCA_ass 99.5 2.3E-12 5E-17 105.2 14.2 106 293-420 3-108 (109)
48 cd04590 CBS_pair_CorC_HlyC_ass 99.5 2.2E-12 4.8E-17 105.8 14.2 108 293-420 2-110 (111)
49 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 1.8E-12 4E-17 106.6 13.6 111 293-420 2-113 (114)
50 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 1.8E-12 3.9E-17 106.7 13.4 111 293-420 3-113 (114)
51 cd04614 CBS_pair_1 The CBS dom 99.4 1.4E-12 2.9E-17 104.8 12.1 94 293-420 2-95 (96)
52 cd04632 CBS_pair_19 The CBS do 99.4 2.2E-12 4.9E-17 108.9 13.7 115 293-421 2-128 (128)
53 cd04620 CBS_pair_7 The CBS dom 99.4 2.7E-12 5.9E-17 106.1 13.8 110 293-420 2-114 (115)
54 cd04636 CBS_pair_23 The CBS do 99.4 2.4E-12 5.2E-17 109.5 13.8 114 293-421 2-132 (132)
55 cd04800 CBS_pair_CAP-ED_DUF294 99.4 5.1E-12 1.1E-16 103.7 15.1 109 293-420 2-110 (111)
56 cd04635 CBS_pair_22 The CBS do 99.4 2.4E-12 5.1E-17 107.6 13.3 114 293-420 2-121 (122)
57 cd04586 CBS_pair_BON_assoc Thi 99.4 1.8E-12 3.9E-17 110.7 12.7 113 293-420 3-134 (135)
58 cd04617 CBS_pair_4 The CBS dom 99.4 2.6E-12 5.5E-17 107.0 13.2 112 216-339 2-117 (118)
59 cd04588 CBS_pair_CAP-ED_DUF294 99.4 6.4E-12 1.4E-16 102.9 14.9 108 293-420 2-109 (110)
60 cd04625 CBS_pair_12 The CBS do 99.4 6.8E-12 1.5E-16 103.1 14.9 110 293-420 2-111 (112)
61 cd04595 CBS_pair_DHH_polyA_Pol 99.4 7.4E-12 1.6E-16 102.6 15.0 107 293-420 3-109 (110)
62 cd04587 CBS_pair_CAP-ED_DUF294 99.4 4.2E-12 9.1E-17 104.5 13.4 111 293-420 2-112 (113)
63 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 3.6E-12 7.7E-17 130.2 15.7 121 278-427 87-207 (475)
64 TIGR00400 mgtE Mg2+ transporte 99.4 1.8E-12 3.9E-17 132.9 13.4 179 194-422 122-305 (449)
65 cd04627 CBS_pair_14 The CBS do 99.4 3.7E-12 8.1E-17 106.8 13.1 117 216-338 2-121 (123)
66 cd04640 CBS_pair_27 The CBS do 99.4 2.3E-12 4.9E-17 108.7 11.8 112 293-420 2-125 (126)
67 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 9.4E-12 2E-16 101.9 14.7 109 293-420 2-110 (111)
68 PRK10892 D-arabinose 5-phospha 99.4 4E-12 8.7E-17 125.4 14.9 124 201-340 200-323 (326)
69 cd04633 CBS_pair_20 The CBS do 99.4 5.3E-12 1.2E-16 105.3 13.5 113 293-421 2-121 (121)
70 cd04589 CBS_pair_CAP-ED_DUF294 99.4 1E-11 2.2E-16 101.9 14.9 110 293-421 2-111 (111)
71 PRK11543 gutQ D-arabinose 5-ph 99.4 4.8E-12 1E-16 124.6 14.6 123 202-340 196-318 (321)
72 TIGR01302 IMP_dehydrog inosine 99.4 6.9E-12 1.5E-16 128.3 16.2 115 288-424 85-202 (450)
73 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 1.1E-11 2.3E-16 101.6 14.3 110 293-421 2-111 (111)
74 cd04585 CBS_pair_ACT_assoc2 Th 99.4 8.3E-12 1.8E-16 103.9 13.8 113 293-420 2-121 (122)
75 PRK01862 putative voltage-gate 99.4 5.1E-12 1.1E-16 133.8 15.4 128 276-424 444-572 (574)
76 cd04606 CBS_pair_Mg_transporte 99.4 4.7E-12 1E-16 103.7 11.8 103 297-422 2-109 (109)
77 PRK11573 hypothetical protein; 99.4 1E-11 2.2E-16 125.6 16.6 135 276-431 184-319 (413)
78 cd04600 CBS_pair_HPP_assoc Thi 99.4 7.2E-12 1.6E-16 104.9 13.0 118 215-339 2-123 (124)
79 cd04599 CBS_pair_GGDEF_assoc2 99.4 1.3E-11 2.8E-16 100.1 14.0 103 293-420 2-104 (105)
80 cd04601 CBS_pair_IMPDH This cd 99.4 6.5E-12 1.4E-16 102.7 12.3 106 293-420 3-109 (110)
81 cd04607 CBS_pair_NTP_transfera 99.4 1E-11 2.2E-16 102.4 13.5 108 217-338 4-111 (113)
82 cd04622 CBS_pair_9 The CBS dom 99.4 1.4E-11 3E-16 101.3 14.2 110 293-420 2-112 (113)
83 cd04639 CBS_pair_26 The CBS do 99.4 6.7E-12 1.5E-16 102.9 12.2 109 216-339 2-110 (111)
84 COG4109 Predicted transcriptio 99.4 5.6E-12 1.2E-16 118.9 12.8 135 279-440 188-328 (432)
85 cd04630 CBS_pair_17 The CBS do 99.4 1.4E-11 3E-16 101.8 13.9 112 216-339 2-113 (114)
86 cd04593 CBS_pair_EriC_assoc_ba 99.4 1.4E-11 2.9E-16 102.0 13.7 111 216-339 2-114 (115)
87 cd04609 CBS_pair_PALP_assoc2 T 99.4 1.6E-11 3.5E-16 100.3 13.9 109 293-421 2-110 (110)
88 PRK07807 inosine 5-monophospha 99.4 1E-11 2.3E-16 126.9 15.6 177 201-423 87-263 (479)
89 cd04623 CBS_pair_10 The CBS do 99.4 1.8E-11 3.8E-16 100.5 14.2 111 216-339 2-112 (113)
90 cd04624 CBS_pair_11 The CBS do 99.4 1.6E-11 3.4E-16 100.9 13.8 110 216-339 2-111 (112)
91 cd04608 CBS_pair_PALP_assoc Th 99.4 3.3E-12 7.1E-17 107.6 9.8 113 215-340 2-123 (124)
92 cd04802 CBS_pair_3 The CBS dom 99.4 2.6E-11 5.7E-16 99.6 14.9 110 293-420 2-111 (112)
93 cd04605 CBS_pair_MET2_assoc Th 99.4 1.7E-11 3.6E-16 100.4 13.7 108 215-339 2-109 (110)
94 cd04643 CBS_pair_30 The CBS do 99.4 1E-11 2.2E-16 102.7 12.5 114 216-339 2-115 (116)
95 cd04637 CBS_pair_24 The CBS do 99.4 1.3E-11 2.8E-16 103.1 13.1 114 293-421 2-122 (122)
96 PRK05567 inosine 5'-monophosph 99.4 1.4E-11 3E-16 127.4 15.9 115 288-424 92-206 (486)
97 PRK05567 inosine 5'-monophosph 99.4 1E-11 2.2E-16 128.4 14.9 176 205-421 89-265 (486)
98 cd04801 CBS_pair_M50_like This 99.4 9E-12 1.9E-16 102.9 11.7 110 216-339 2-113 (114)
99 cd04602 CBS_pair_IMPDH_2 This 99.4 1.9E-11 4.2E-16 101.0 13.7 107 293-420 3-113 (114)
100 cd04584 CBS_pair_ACT_assoc Thi 99.4 2.3E-11 4.9E-16 101.3 14.1 113 293-420 2-120 (121)
101 TIGR00400 mgtE Mg2+ transporte 99.3 1.4E-11 3.1E-16 126.3 14.7 124 277-428 129-257 (449)
102 cd04610 CBS_pair_ParBc_assoc T 99.3 2.5E-11 5.4E-16 98.8 13.4 104 293-420 3-106 (107)
103 cd04803 CBS_pair_15 The CBS do 99.3 2E-11 4.4E-16 101.9 13.1 117 216-339 2-121 (122)
104 PLN02274 inosine-5'-monophosph 99.3 1.9E-11 4.1E-16 126.0 15.5 116 289-424 106-223 (505)
105 PRK15094 magnesium/cobalt effl 99.3 2.2E-11 4.9E-16 117.5 15.1 170 194-391 58-227 (292)
106 cd04642 CBS_pair_29 The CBS do 99.3 1.9E-11 4.2E-16 102.9 12.9 120 216-339 2-125 (126)
107 cd04631 CBS_pair_18 The CBS do 99.3 1.6E-11 3.6E-16 102.9 12.4 118 216-339 2-124 (125)
108 cd04621 CBS_pair_8 The CBS dom 99.3 3.2E-11 6.9E-16 103.2 14.0 116 216-339 2-134 (135)
109 cd04594 CBS_pair_EriC_assoc_ar 99.3 3.6E-11 7.8E-16 97.7 13.6 100 295-420 4-103 (104)
110 TIGR03520 GldE gliding motilit 99.3 2.6E-11 5.7E-16 122.6 15.4 169 194-393 182-350 (408)
111 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 3.7E-11 8E-16 98.0 13.6 106 216-339 3-108 (109)
112 cd04615 CBS_pair_2 The CBS dom 99.3 3.1E-11 6.8E-16 99.3 13.2 110 217-339 3-112 (113)
113 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 2.5E-11 5.4E-16 99.9 12.6 112 215-339 2-113 (114)
114 cd04634 CBS_pair_21 The CBS do 99.3 4.3E-11 9.2E-16 103.4 14.6 112 293-420 2-142 (143)
115 cd04614 CBS_pair_1 The CBS dom 99.3 2.4E-11 5.2E-16 97.5 12.0 94 216-339 2-95 (96)
116 cd04582 CBS_pair_ABC_OpuCA_ass 99.3 3.8E-11 8.1E-16 97.6 13.2 104 216-339 2-105 (106)
117 cd04632 CBS_pair_19 The CBS do 99.3 2.6E-11 5.7E-16 102.3 12.6 118 216-339 2-127 (128)
118 cd04629 CBS_pair_16 The CBS do 99.3 2.3E-11 4.9E-16 100.2 11.7 112 216-339 2-113 (114)
119 cd04596 CBS_pair_DRTGG_assoc T 99.3 2.4E-11 5.3E-16 99.3 11.8 106 215-339 2-107 (108)
120 cd04626 CBS_pair_13 The CBS do 99.3 3.8E-11 8.2E-16 98.5 12.9 109 216-339 2-110 (111)
121 cd04636 CBS_pair_23 The CBS do 99.3 3.5E-11 7.7E-16 102.2 13.2 116 216-339 2-131 (132)
122 COG0517 FOG: CBS domain [Gener 99.3 7.7E-11 1.7E-15 97.4 14.6 112 288-419 4-117 (117)
123 cd02205 CBS_pair The CBS domai 99.3 6.4E-11 1.4E-15 96.3 13.9 111 293-420 2-112 (113)
124 cd04598 CBS_pair_GGDEF_assoc T 99.3 4.8E-11 1E-15 99.1 13.2 113 293-420 2-118 (119)
125 PTZ00314 inosine-5'-monophosph 99.3 4.4E-11 9.6E-16 123.2 15.6 116 288-423 101-218 (495)
126 PRK07107 inosine 5-monophospha 99.3 3.4E-11 7.4E-16 123.9 14.2 111 294-422 107-219 (502)
127 cd04588 CBS_pair_CAP-ED_DUF294 99.3 6.7E-11 1.5E-15 96.8 13.3 108 216-339 2-109 (110)
128 COG2905 Predicted signal-trans 99.3 2.4E-11 5.2E-16 121.6 12.4 126 201-344 147-272 (610)
129 cd04620 CBS_pair_7 The CBS dom 99.3 6E-11 1.3E-15 98.0 12.9 110 216-339 2-114 (115)
130 PRK01862 putative voltage-gate 99.3 3.6E-11 7.8E-16 127.4 14.1 127 200-342 444-571 (574)
131 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 6.5E-11 1.4E-15 97.3 12.6 112 216-339 2-113 (114)
132 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 9.6E-11 2.1E-15 95.9 13.5 109 216-339 2-110 (111)
133 cd04585 CBS_pair_ACT_assoc2 Th 99.3 7.8E-11 1.7E-15 98.0 13.1 116 216-339 2-121 (122)
134 cd04590 CBS_pair_CorC_HlyC_ass 99.3 8.4E-11 1.8E-15 96.4 13.1 108 217-339 3-110 (111)
135 cd04625 CBS_pair_12 The CBS do 99.3 1E-10 2.2E-15 96.0 13.5 110 216-339 2-111 (112)
136 cd04586 CBS_pair_BON_assoc Thi 99.3 4.4E-11 9.6E-16 102.0 11.7 117 215-339 2-134 (135)
137 TIGR00393 kpsF KpsF/GutQ famil 99.3 4E-11 8.6E-16 114.9 12.5 113 279-414 155-268 (268)
138 cd04595 CBS_pair_DHH_polyA_Pol 99.3 1.2E-10 2.6E-15 95.4 13.6 108 215-339 2-109 (110)
139 cd04591 CBS_pair_EriC_assoc_eu 99.3 8.3E-11 1.8E-15 95.9 12.5 101 293-421 3-105 (105)
140 cd04640 CBS_pair_27 The CBS do 99.3 5E-11 1.1E-15 100.4 11.6 112 216-339 2-125 (126)
141 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 1.1E-10 2.4E-15 119.3 16.1 119 201-343 86-204 (475)
142 cd04589 CBS_pair_CAP-ED_DUF294 99.3 1.3E-10 2.9E-15 95.2 13.7 108 217-339 3-110 (111)
143 cd04635 CBS_pair_22 The CBS do 99.3 6.5E-11 1.4E-15 98.8 12.0 117 216-339 2-121 (122)
144 cd04800 CBS_pair_CAP-ED_DUF294 99.3 1.2E-10 2.6E-15 95.5 13.3 109 216-339 2-110 (111)
145 cd04587 CBS_pair_CAP-ED_DUF294 99.3 9.4E-11 2E-15 96.3 12.7 111 216-339 2-112 (113)
146 cd04638 CBS_pair_25 The CBS do 99.3 1.8E-10 4E-15 93.6 14.2 104 293-420 2-105 (106)
147 COG1253 TlyC Hemolysins and re 99.3 8.1E-11 1.8E-15 120.0 14.8 134 276-432 203-337 (429)
148 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 1.3E-10 2.7E-15 95.2 13.0 109 216-339 2-110 (111)
149 PRK07107 inosine 5-monophospha 99.2 7.8E-11 1.7E-15 121.3 14.1 166 149-342 52-220 (502)
150 cd04802 CBS_pair_3 The CBS dom 99.2 2.1E-10 4.6E-15 94.1 13.9 110 216-339 2-111 (112)
151 cd04637 CBS_pair_24 The CBS do 99.2 1E-10 2.3E-15 97.6 12.0 116 216-339 2-121 (122)
152 TIGR01137 cysta_beta cystathio 99.2 1.4E-10 3E-15 119.7 15.1 125 273-422 329-453 (454)
153 cd04602 CBS_pair_IMPDH_2 This 99.2 2E-10 4.4E-15 94.8 12.7 106 216-339 3-113 (114)
154 cd04584 CBS_pair_ACT_assoc Thi 99.2 1.9E-10 4.2E-15 95.7 12.7 116 216-339 2-120 (121)
155 cd04622 CBS_pair_9 The CBS dom 99.2 2.4E-10 5.3E-15 93.8 13.1 110 216-339 2-112 (113)
156 cd04633 CBS_pair_20 The CBS do 99.2 1.6E-10 3.5E-15 96.2 12.1 115 216-339 2-120 (121)
157 cd04606 CBS_pair_Mg_transporte 99.2 1.7E-10 3.8E-15 94.3 11.3 102 220-340 2-108 (109)
158 cd04601 CBS_pair_IMPDH This cd 99.2 1.7E-10 3.7E-15 94.2 11.2 107 215-339 2-109 (110)
159 cd04599 CBS_pair_GGDEF_assoc2 99.2 2.8E-10 6E-15 92.2 12.3 102 216-338 2-103 (105)
160 TIGR00393 kpsF KpsF/GutQ famil 99.2 1.7E-10 3.6E-15 110.6 12.8 113 203-333 155-268 (268)
161 cd04609 CBS_pair_PALP_assoc2 T 99.2 2.7E-10 5.9E-15 92.9 12.3 108 216-339 2-109 (110)
162 COG0517 FOG: CBS domain [Gener 99.2 4.3E-10 9.3E-15 92.9 13.5 108 215-337 7-116 (117)
163 cd02205 CBS_pair The CBS domai 99.2 4E-10 8.7E-15 91.6 13.0 111 216-339 2-112 (113)
164 COG4535 CorC Putative Mg2+ and 99.2 2.1E-10 4.4E-15 102.9 10.4 171 223-436 31-202 (293)
165 cd04594 CBS_pair_EriC_assoc_ar 99.2 6E-10 1.3E-14 90.4 12.5 100 218-339 4-103 (104)
166 cd04610 CBS_pair_ParBc_assoc T 99.2 5.8E-10 1.3E-14 90.6 12.2 105 215-339 2-106 (107)
167 COG4109 Predicted transcriptio 99.2 2.3E-10 4.9E-15 108.2 10.9 120 203-343 188-307 (432)
168 cd04591 CBS_pair_EriC_assoc_eu 99.1 7E-10 1.5E-14 90.5 12.2 100 216-339 3-104 (105)
169 PLN02274 inosine-5'-monophosph 99.1 4.7E-10 1E-14 115.7 13.8 112 215-343 108-223 (505)
170 TIGR01137 cysta_beta cystathio 99.1 1E-09 2.2E-14 113.3 14.8 122 200-341 332-453 (454)
171 TIGR01302 IMP_dehydrog inosine 99.1 5.4E-10 1.2E-14 114.5 12.6 112 215-342 88-201 (450)
172 cd04634 CBS_pair_21 The CBS do 99.1 1.3E-09 2.8E-14 94.1 12.9 115 216-339 2-142 (143)
173 cd04592 CBS_pair_EriC_assoc_eu 99.1 1.4E-09 3E-14 92.8 11.9 110 293-406 2-119 (133)
174 cd04638 CBS_pair_25 The CBS do 99.1 2.1E-09 4.6E-14 87.3 12.5 104 216-339 2-105 (106)
175 PTZ00314 inosine-5'-monophosph 99.1 1.7E-09 3.6E-14 111.6 14.6 112 215-342 104-218 (495)
176 COG4536 CorB Putative Mg2+ and 99.1 6.1E-10 1.3E-14 106.5 10.1 128 277-425 198-326 (423)
177 PRK11573 hypothetical protein; 99.1 3.4E-09 7.3E-14 107.3 16.2 172 194-391 178-349 (413)
178 cd04598 CBS_pair_GGDEF_assoc T 99.1 2.2E-09 4.8E-14 89.0 11.6 113 216-339 2-118 (119)
179 COG2239 MgtE Mg/Co/Ni transpor 99.0 1.8E-09 3.9E-14 108.9 11.4 131 277-435 130-265 (451)
180 cd04592 CBS_pair_EriC_assoc_eu 99.0 6.9E-09 1.5E-13 88.5 11.7 106 216-323 2-117 (133)
181 PF00571 CBS: CBS domain CBS d 98.9 3.9E-09 8.5E-14 75.8 7.8 56 355-423 1-56 (57)
182 COG1253 TlyC Hemolysins and re 98.9 4.1E-08 9E-13 100.2 17.1 172 193-392 196-367 (429)
183 TIGR01186 proV glycine betaine 98.8 2.9E-07 6.2E-12 91.6 17.9 171 219-424 183-359 (363)
184 COG2239 MgtE Mg/Co/Ni transpor 98.7 7.1E-08 1.5E-12 97.5 11.7 129 192-343 121-254 (451)
185 KOG2550 IMP dehydrogenase/GMP 98.7 3.2E-08 7E-13 95.5 8.5 161 235-422 57-227 (503)
186 COG4535 CorC Putative Mg2+ and 98.7 2.9E-08 6.4E-13 89.2 7.1 139 187-342 51-189 (293)
187 PF00571 CBS: CBS domain CBS d 98.7 6.2E-08 1.4E-12 69.4 7.6 56 205-265 1-56 (57)
188 PRK10070 glycine betaine trans 98.7 3.8E-07 8.3E-12 91.8 15.2 105 297-424 290-394 (400)
189 COG4536 CorB Putative Mg2+ and 98.6 5.9E-07 1.3E-11 86.3 12.1 170 196-392 193-362 (423)
190 KOG2550 IMP dehydrogenase/GMP 98.4 2.7E-06 6E-11 82.4 10.9 111 215-342 116-228 (503)
191 TIGR01186 proV glycine betaine 98.3 1E-05 2.3E-10 80.5 14.3 108 217-343 252-359 (363)
192 KOG0474 Cl- channel CLC-7 and 98.3 1.3E-06 2.8E-11 88.8 7.0 149 277-431 580-755 (762)
193 PRK10070 glycine betaine trans 98.2 1.6E-05 3.4E-10 80.3 12.8 121 203-343 274-394 (400)
194 KOG0474 Cl- channel CLC-7 and 98.2 4E-06 8.7E-11 85.4 7.8 135 200-340 579-745 (762)
195 cd04597 CBS_pair_DRTGG_assoc2 97.9 2.8E-05 6E-10 64.1 6.9 55 353-420 58-112 (113)
196 smart00116 CBS Domain in cysta 97.9 4.8E-05 1E-09 51.2 6.2 47 375-422 2-48 (49)
197 KOG0475 Cl- channel CLC-3 and 97.7 0.0003 6.4E-09 72.2 11.5 127 293-422 557-694 (696)
198 cd04597 CBS_pair_DRTGG_assoc2 97.7 0.00012 2.6E-09 60.3 6.7 55 279-339 58-112 (113)
199 KOG0475 Cl- channel CLC-3 and 97.6 0.00056 1.2E-08 70.2 11.7 137 198-341 538-694 (696)
200 smart00116 CBS Domain in cysta 97.5 0.00038 8.1E-09 46.6 6.4 47 294-341 2-48 (49)
201 TIGR03415 ABC_choXWV_ATP choli 97.0 0.0068 1.5E-07 60.9 11.8 145 238-424 232-381 (382)
202 COG4175 ProV ABC-type proline/ 96.9 0.0017 3.7E-08 62.0 6.0 159 223-424 222-384 (386)
203 COG4175 ProV ABC-type proline/ 95.2 0.049 1.1E-06 52.3 6.4 113 201-343 272-384 (386)
204 TIGR03415 ABC_choXWV_ATP choli 94.7 0.19 4.2E-06 50.5 9.8 110 200-342 271-380 (382)
205 KOG0476 Cl- channel CLC-2 and 93.1 1.3 2.9E-05 47.2 12.3 86 19-113 562-648 (931)
206 COG1125 OpuBA ABC-type proline 91.5 0.95 2.1E-05 42.5 8.0 111 293-421 188-308 (309)
207 COG1125 OpuBA ABC-type proline 91.4 1.8 4E-05 40.7 9.7 107 222-340 192-308 (309)
208 KOG0476 Cl- channel CLC-2 and 90.9 1.1 2.4E-05 47.8 8.6 61 203-267 588-649 (931)
209 KOG2118 Predicted membrane pro 87.4 0.87 1.9E-05 47.4 5.1 123 288-428 209-333 (498)
210 KOG2118 Predicted membrane pro 76.5 3.9 8.4E-05 42.7 5.0 128 195-337 196-324 (498)
211 PF05198 IF3_N: Translation in 36.3 70 0.0015 24.1 4.2 27 396-423 12-38 (76)
212 PRK11388 DNA-binding transcrip 34.7 1.2E+02 0.0026 32.8 7.4 97 227-333 62-162 (638)
213 PRK11388 DNA-binding transcrip 32.3 1.3E+02 0.0028 32.5 7.3 94 304-414 62-162 (638)
214 PRK10026 arsenate reductase; P 28.5 3.7E+02 0.0081 22.9 8.8 116 294-429 6-123 (141)
215 PF11112 PyocinActivator: Pyoc 27.3 2.2E+02 0.0047 21.5 5.5 47 63-116 27-73 (76)
216 cd01787 GRB7_RA RA (RAS-associ 26.0 60 0.0013 25.1 2.3 30 49-78 8-37 (85)
217 smart00594 UAS UAS domain. 23.4 92 0.002 25.5 3.2 61 200-264 50-121 (122)
218 COG2216 KdpB High-affinity K+ 20.8 1.3E+02 0.0029 31.4 4.2 39 381-421 412-450 (681)
219 PF11798 IMS_HHH: IMS family H 20.5 91 0.002 19.1 2.0 18 35-52 2-19 (32)
No 1
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.97 E-value=6.5e-30 Score=253.02 Aligned_cols=343 Identities=23% Similarity=0.352 Sum_probs=270.9
Q ss_pred cchhhHHHHHhhhccCCCChHHHHHHHhhcCCccCCCCCCCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCC
Q 013373 14 SSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSD 93 (444)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~ 93 (444)
|.....-+........+....+.+..|++...+.+++. .+.+++.++..+++.+|+.+|..++.+++||||.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~----- 109 (381)
T KOG1764|consen 36 PEASPFLVSENEVETAESNAVDTLSKFMKSHTCYDLLP-TSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKK----- 109 (381)
T ss_pred ccccccccccccccccccchhHHHHHHHhccCcccccC-CcceeEEeeCCCcHHHHHHHHHhhceeeeccccCcc-----
Confidence 33344444444444444445557777776655444443 478999999999999999999999999999999987
Q ss_pred cccceeEEEehhHHHHHHHhhhhHHhhhcccccccccccccccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhc
Q 013373 94 WKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEK 173 (444)
Q Consensus 94 ~~~~~~Giv~~~di~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 173 (444)
+++.|++++.|++..++..+...
T Consensus 110 --~~~~g~~~~~d~i~~~~~~~~~~------------------------------------------------------- 132 (381)
T KOG1764|consen 110 --QQFVGMLTITDFITVLLRYYKSK------------------------------------------------------- 132 (381)
T ss_pred --ceeEEEEEHHHHHHHHHHhhccC-------------------------------------------------------
Confidence 79999999999999886654310
Q ss_pred cCCCCCccccccccchhHHhhhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEE
Q 013373 174 GAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKN 253 (444)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~G 253 (444)
...++...+.........++..+.....+++++.+.+..++.++...+.+++++++||.|.+.+.+.+
T Consensus 133 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ 200 (381)
T KOG1764|consen 133 ------------SSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLY 200 (381)
T ss_pred ------------CcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeecccccceee
Confidence 01122223333333344455556665555667999999999999999999999999999976789999
Q ss_pred EEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEe
Q 013373 254 YITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVS 333 (444)
Q Consensus 254 ivt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt 333 (444)
++|++.|++++..+...-++..+...++.+++++.+. ++..+..++++.+|+++|.+++++.+||++. .|+.+|+++
T Consensus 201 ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~--~i~~i~~~~~v~~al~~m~~~~is~lpvV~~-~g~~v~~~s 277 (381)
T KOG1764|consen 201 ILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS--NIASISEDTPVIEALKIMSERRISALPVVDE-NGKKVGNYS 277 (381)
T ss_pred ehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh--hheeecCCCcHHHHHHHHHhcCcCcceEEcC-CCceeccee
Confidence 9999999999998866566678889999999987554 6999999999999999999999999999999 777799999
Q ss_pred HHHHHHHhcCCccccccccCc-HHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEE
Q 013373 334 IRDIRHLLLKPELFSNFRQLT-VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 412 (444)
Q Consensus 334 ~~Dll~~l~~~~~~~~~~~~~-v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGv 412 (444)
..|+......... ... ..+ +.+....+ ..++.++++|.++++|.+++..|..+++||+||||++| .++|+
T Consensus 278 ~~Dv~~l~~~~~~-~~~-~~~~l~~~~~~~------~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~-~l~Gv 348 (381)
T KOG1764|consen 278 RFDVIHLAREGTY-NNL-DLSCLSEALSHR------PIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDG-VLVGV 348 (381)
T ss_pred hhhhhhhhhcCcc-Ccc-chhHHHHHhhhc------ccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCC-cEEEE
Confidence 9999998876433 222 333 55555432 22445789999999999999999999999999999988 99999
Q ss_pred EeHHHHHHHhHcCCCccchhhhhhhHHHhhc
Q 013373 413 ITLRDVISCFIFEPPNHLDNYFGFSVKDLLN 443 (444)
Q Consensus 413 IT~~DIl~~l~~e~~~~~~~~~~~~~~~~~~ 443 (444)
||++||+.+++.+|.+++.+.+++..+...|
T Consensus 349 vSLsDil~~l~~~p~~~~~~~~~~~~~~~~~ 379 (381)
T KOG1764|consen 349 ISLSDILSYLVLTPSGGTPDAPSSSMSTSEN 379 (381)
T ss_pred eeHHHHHHHHHhCccCCCCCCcCccccccCC
Confidence 9999999999999999999988877665443
No 2
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.76 E-value=9.4e-18 Score=151.35 Aligned_cols=125 Identities=27% Similarity=0.447 Sum_probs=114.7
Q ss_pred ccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCc
Q 013373 275 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT 354 (444)
Q Consensus 275 ~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~ 354 (444)
.+...++++ +|++ +++++.+++|+.++.++|.++++++.||+|+ ++++|++|.+|+..++.+... +..
T Consensus 168 siPk~~V~~----~~s~-~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~-----~~k 235 (294)
T COG2524 168 SIPKEKVKN----LMSK-KLITVRPDDTLREAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNL-----DAK 235 (294)
T ss_pred ecCcchhhh----hccC-CceEecCCccHHHHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCc-----ccc
Confidence 346778899 7887 9999999999999999999999999999995 599999999999999886432 678
Q ss_pred HHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373 355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 355 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
|+++|.+ ++++++.|+.+.||+++|..+++.|+.|+|.+| +++|+||++|||+.++.
T Consensus 236 V~~~M~k------------~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~g-kpvGiITrTDIL~~ia~ 292 (294)
T COG2524 236 VSDYMRK------------NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNG-KPVGIITRTDILTRIAG 292 (294)
T ss_pred HHHHhcc------------CCceEcCchhHHHHHHHHHhcCcceEEEEccCC-cEEEEEehHHHHHHhhc
Confidence 9999995 999999999999999999999999999999887 99999999999998875
No 3
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.71 E-value=8.6e-17 Score=145.20 Aligned_cols=125 Identities=25% Similarity=0.425 Sum_probs=115.9
Q ss_pred CCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccc
Q 013373 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA 277 (444)
Q Consensus 198 ~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~ 277 (444)
..+...+|.++|+ ++++++.+++|+.+|.++|.+++++..||+|++ +++|++|.+||...+.++. .
T Consensus 167 ~siPk~~V~~~~s----~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d--k~vGiit~~dI~~aia~g~--------~ 232 (294)
T COG2524 167 VSIPKEKVKNLMS----KKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD--KIVGIITLSDIAKAIANGN--------L 232 (294)
T ss_pred eecCcchhhhhcc----CCceEecCCccHHHHHHHHHHcCccCCceecCC--ceEEEEEHHHHHHHHHcCC--------c
Confidence 3456788999999 889999999999999999999999999999984 8999999999999998873 5
Q ss_pred cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 278 ~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
+.+|++ +|.+ +++++.+|+.+.||+++|..++++++.|+|. +|+++|+||++|++..+.
T Consensus 233 ~~kV~~----~M~k-~vitI~eDe~i~dAir~M~~~nVGRLlV~ds-~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 233 DAKVSD----YMRK-NVITINEDEDIYDAIRLMNKNNVGRLLVTDS-NGKPVGIITRTDILTRIA 291 (294)
T ss_pred cccHHH----Hhcc-CCceEcCchhHHHHHHHHHhcCcceEEEEcc-CCcEEEEEehHHHHHHhh
Confidence 689999 8997 9999999999999999999999999999998 899999999999998764
No 4
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.64 E-value=7.1e-16 Score=141.66 Aligned_cols=128 Identities=24% Similarity=0.438 Sum_probs=112.0
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc---ccccC
Q 013373 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS---NFRQL 353 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~---~~~~~ 353 (444)
......+ +|++ +++++++++++.+|.++|.++++..+||+|+ +.+++|+++++|+.+.... ..++ ....-
T Consensus 243 ~~Ltcad----IMSr-dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~-~~rl~GiVt~~dl~~~a~~-~p~qrlr~~~~~ 315 (382)
T COG3448 243 GELTCAD----IMSR-DVVTVSTDTSIDHARKLLQEHRIKALPVLDE-HRRLVGIVTQRDLLKHARP-SPFQRLRFLRPP 315 (382)
T ss_pred ccccHHH----hcCc-cceecCCcCChHHHHHHHHHcCccccccccc-ccceeeeeeHHHHhhccCc-chHHHhhccCCC
Confidence 4567778 8997 9999999999999999999999999999999 8999999999999885432 2222 23345
Q ss_pred cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373 354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
+++.+|+. ++.++.++++..+.+-++.+.+.|++||+|++| +++||||.+|++..++.
T Consensus 316 ~vk~imt~------------~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g-~lvGIvsQtDliaal~r 373 (382)
T COG3448 316 TVKGIMTT------------PVVTVRPDTPAVELVPRLADEGLHALPVLDAAG-KLVGIVSQTDLIAALYR 373 (382)
T ss_pred cccccccC------------cceeecCCCcHHHHHHHhhcCCcceeeEEcCCC-cEEEEeeHHHHHHHHHH
Confidence 67888875 889999999999999999999999999999998 99999999999999875
No 5
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.63 E-value=5.5e-15 Score=123.99 Aligned_cols=137 Identities=27% Similarity=0.457 Sum_probs=113.0
Q ss_pred eHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHH
Q 013373 256 TQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 335 (444)
Q Consensus 256 t~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~ 335 (444)
+.+.|+++|.++.+ .....+. +|+. +++.+++++++.+++++|.+++++.+||++ +++++|-||..
T Consensus 49 t~k~Il~aL~e~e~-------~~ita~~----iM~s-pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~--~~k~VGsItE~ 114 (187)
T COG3620 49 TVKRILEALEEAEK-------TRITAKT----IMHS-PVVSVSPDDSISDVVNLMRDKGISQLPVIE--EDKVVGSITEN 114 (187)
T ss_pred HHHHHHHHHHHhhc-------ceEeHhh----hccC-CeeEECchhhHHHHHHHHHHcCCccCceee--CCeeeeeecHH
Confidence 44667777766532 2335556 7886 999999999999999999999999999999 69999999999
Q ss_pred HHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeH
Q 013373 336 DIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITL 415 (444)
Q Consensus 336 Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~ 415 (444)
++.+++... ...+....+.++|.. ++.+++++.++..+-+++..++ .+.|+ ++| +++||||+
T Consensus 115 ~iv~~~le~--~e~i~~~~vr~vM~e------------~fP~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G-~~vGIITk 176 (187)
T COG3620 115 DIVRALLEG--MESIRSLRVREVMGE------------PFPTVSPDESLNVISQLLEEHP--AVLVV-ENG-KVVGIITK 176 (187)
T ss_pred HHHHHHhcc--ccchhhhhHHHHhcC------------CCCcCCCCCCHHHHHHHHhhCC--eEEEE-eCC-ceEEEEeH
Confidence 999997643 234678899999984 8899999999999988888765 56667 455 99999999
Q ss_pred HHHHHHhHc
Q 013373 416 RDVISCFIF 424 (444)
Q Consensus 416 ~DIl~~l~~ 424 (444)
.||++.+.+
T Consensus 177 ~DI~k~~~~ 185 (187)
T COG3620 177 ADIMKLLAG 185 (187)
T ss_pred HHHHHHHhc
Confidence 999998764
No 6
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.60 E-value=3.1e-15 Score=157.43 Aligned_cols=299 Identities=16% Similarity=0.207 Sum_probs=190.6
Q ss_pred CCccCCCCCCCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHhhhhHHhhhcc
Q 013373 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS 123 (444)
Q Consensus 44 ~~v~~~~~~~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~~~~~~~~~~~ 123 (444)
.+|++++ .++++++++++++.+|+++|.+++++.+||+|++ ++++|+|+..|+..++++..+....
T Consensus 68 ~~V~dim---~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--------g~l~Givt~~di~~~~~~~~~~~~~--- 133 (546)
T PRK14869 68 PQVRDLE---IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE--------GKLLGLVSLSDLARAYMDILDPEIL--- 133 (546)
T ss_pred CcHHHhc---CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CEEEEEEEHHHHHHHHHhhcchhhh---
Confidence 4555554 4689999999999999999999999999999986 4999999999999988765431110
Q ss_pred cccccccccccccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhhhccCCCCCC
Q 013373 124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST 203 (444)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 203 (444)
...+.++..+..+..|.-+.|+-..+...++ ..+......
T Consensus 134 -----------------------~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~--~~v~a~~~~--------------- 173 (546)
T PRK14869 134 -----------------------SKSPTSLENIIRTLDGEVLVGAEEDKVEEGK--VVVAAMAPE--------------- 173 (546)
T ss_pred -----------------------hhcCCCHHHHHHhcCcEEEecCccccccccc--EEEEEcCHH---------------
Confidence 1123345555555555555442111100000 000000000
Q ss_pred cHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC-----------CCcEEEEEeHHHHHHHhhcCCCCCc
Q 013373 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-----------TPDIKNYITQSAVVQGLEGCKGRDW 272 (444)
Q Consensus 204 ~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~-----------~~~l~Givt~~di~~~l~~~~~~~~ 272 (444)
.+.+.+. ...++.+.....+ +..+.+.++++++|+... ...+.++.|..|.......-.
T Consensus 174 ~~~~~~~---~~~lvi~gdr~d~---~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ii~t~~dt~~t~~~l~---- 243 (546)
T PRK14869 174 SLLERIE---EGDIVIVGDREDI---QLAAIEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTFTTARLIN---- 243 (546)
T ss_pred HHHHhcc---CCCEEEEcCcHHH---HHHHHHcCCCEEEECCCCCCCHHHHHHHHhCCCeEEEecccHHHHHHHhh----
Confidence 1112222 1335555333333 335678889999888653 236889999999887665432
Q ss_pred ccccccCcccccccCCCC-CCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccc----
Q 013373 273 FDIIASQPISDLGLPFMS-SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF---- 347 (444)
Q Consensus 273 ~~~~~~~~v~~l~l~im~-~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~---- 347 (444)
...+|.+ +|+ . ++.++++++++.++.+.|.+++++.+||+|+ +|+++|++|.+|++.....+-..
T Consensus 244 ----~~~~V~~----iM~~~-~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~-~g~lvGiit~~dl~~~~~~~~iLVD~~ 313 (546)
T PRK14869 244 ----QSIPVSY----IMTTE-DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE-DGKVVGVISRYHLLSPVRKKVILVDHN 313 (546)
T ss_pred ----cCCCHHH----hccCC-CcEEECCCCcHHHHHHHHHhcCCCceEEEcC-CCCEEEEEEHHHhhccccCceEEEcCc
Confidence 4578999 798 5 8999999999999999999999999999998 89999999999999865421000
Q ss_pred ---c---ccccCcHHHHhcccCCCCCCCCCCCCCeEe---cCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHH
Q 013373 348 ---S---NFRQLTVRDFMNAVVPTTPDSGKVNPPITC---KLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDV 418 (444)
Q Consensus 348 ---~---~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v---~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DI 418 (444)
. ......+.+++.. +.... .....++.+ +...+..-+.++|.+.++...|++.. ..+.||+|-++.
T Consensus 314 e~~q~~~~~~~~~i~~iiDH--H~~~~-~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~--~ll~gIlsDT~~ 388 (546)
T PRK14869 314 EKSQAVEGIEEAEILEIIDH--HRLGD-IQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAG--LLLAAILSDTLL 388 (546)
T ss_pred cccccccchhhceEEEEecC--CccCC-CCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHHhcC
Confidence 0 0000000001100 00000 011233333 44667778889999999888887754 368888888887
Q ss_pred HHH
Q 013373 419 ISC 421 (444)
Q Consensus 419 l~~ 421 (444)
+++
T Consensus 389 f~~ 391 (546)
T PRK14869 389 FKS 391 (546)
T ss_pred ccC
Confidence 764
No 7
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.58 E-value=1.1e-14 Score=133.97 Aligned_cols=132 Identities=20% Similarity=0.371 Sum_probs=113.6
Q ss_pred CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013373 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (444)
Q Consensus 200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~ 279 (444)
+...+..|||+ .+++++.+++++.+|.++|.+++++.+||+|++ .+++|++|+.|+.+-..... ...+..+...
T Consensus 242 ~~~LtcadIMS----rdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p-~qrlr~~~~~ 315 (382)
T COG3448 242 MGELTCADIMS----RDVVTVSTDTSIDHARKLLQEHRIKALPVLDEH-RRLVGIVTQRDLLKHARPSP-FQRLRFLRPP 315 (382)
T ss_pred hccccHHHhcC----ccceecCCcCChHHHHHHHHHcCcccccccccc-cceeeeeeHHHHhhccCcch-HHHhhccCCC
Confidence 44568899999 779999999999999999999999999999998 79999999999987433221 1222234566
Q ss_pred cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
+++. +|+. ++.++.++++..+.+-.+.+.+.+++||+|+ .|+++||||++|++..+.+
T Consensus 316 ~vk~----imt~-~v~tv~pdtpa~~lvp~lad~g~H~lpvld~-~g~lvGIvsQtDliaal~r 373 (382)
T COG3448 316 TVKG----IMTT-PVVTVRPDTPAVELVPRLADEGLHALPVLDA-AGKLVGIVSQTDLIAALYR 373 (382)
T ss_pred cccc----cccC-cceeecCCCcHHHHHHHhhcCCcceeeEEcC-CCcEEEEeeHHHHHHHHHH
Confidence 7888 8997 8999999999999999999999999999999 9999999999999988753
No 8
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=5.7e-14 Score=116.33 Aligned_cols=112 Identities=19% Similarity=0.266 Sum_probs=97.5
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
.+.++.+++++.++++.|.+++...+||+|+ +|+++|+++..|+++.+..... .....++.++|..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~g~~~G~vt~~dl~~~~~~~~~--~~~~~~v~~~~~~----------- 67 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDP-HGKLAGVLTKTDVVRQMGRCGG--PGCTAPVENVMTR----------- 67 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEehHHHHHHHhhcCC--CcccCCHHHHhcC-----------
Confidence 3678899999999999999999999999998 8999999999999876542110 1235679999974
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+++.+++||+|+++ +++|+||++|+++
T Consensus 68 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~~Gvi~~~dl~~ 113 (114)
T cd04619 68 -AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENA-RPLGVLNARDALK 113 (114)
T ss_pred -CCeeECCCCCHHHHHHHHHHcCCCeEEEECCCC-cEEEEEEhHhhcc
Confidence 889999999999999999999999999999887 9999999999975
No 9
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.56 E-value=5.6e-14 Score=115.84 Aligned_cols=109 Identities=18% Similarity=0.321 Sum_probs=95.3
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.++.++.++++.|.+++.+.++|+|+ +++++|+++..|+++... .. ....++.++|..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~--~~---~~~~~v~~~~~~----------- 64 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDE-ENKVLGQVTLSDLLEIGP--ND---YETLKVCEVYIV----------- 64 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHhhcc--cc---ccccChhheeec-----------
Confidence 4678899999999999999999999999997 789999999999987522 11 123578888874
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.+++++|.+++.+++||+|+++ +++|+||.+|+++
T Consensus 65 -~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~-~~~Giit~~di~~ 110 (111)
T cd04603 65 -PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEG-KLVGTIYERELLR 110 (111)
T ss_pred -CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCC-eEEEEEEhHHhhc
Confidence 778999999999999999999999999999887 9999999999986
No 10
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.56 E-value=9.5e-14 Score=146.24 Aligned_cols=195 Identities=12% Similarity=0.153 Sum_probs=145.1
Q ss_pred CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccccc------
Q 013373 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII------ 276 (444)
Q Consensus 203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~------ 276 (444)
.+++++|. ++++++.+++++.+|+++|.+++++.+||+|++ |+++|++|..|+.+.+........+...
T Consensus 68 ~~V~dim~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~ 142 (546)
T PRK14869 68 PQVRDLEI----DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN 142 (546)
T ss_pred CcHHHhcC----CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence 57999998 679999999999999999999999999999987 8999999999999876543211001000
Q ss_pred -----c----------cCccccccc---------CCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCC--------
Q 013373 277 -----A----------SQPISDLGL---------PFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ-------- 324 (444)
Q Consensus 277 -----~----------~~~v~~l~l---------~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~-------- 324 (444)
. ......+.+ ..|....++.+.... +....+.+.++++++|+...
T Consensus 143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~---d~~~~ai~~~~~~lIlt~g~~~~~~v~~ 219 (546)
T PRK14869 143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRE---DIQLAAIEAGVRLLIITGGAPVSEDVLE 219 (546)
T ss_pred HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcH---HHHHHHHHcCCCEEEECCCCCCCHHHHH
Confidence 0 000001000 023332344443222 34446788999999888641
Q ss_pred ---CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhc-ccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEE
Q 013373 325 ---QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN-AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIY 400 (444)
Q Consensus 325 ---~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~-~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~ 400 (444)
+..+.++.|..|....... . ....+|.++|+ . ++.++++++++.++.+.|.+++.+++|
T Consensus 220 la~~~~i~ii~t~~dt~~t~~~--l---~~~~~V~~iM~~~------------~~~~~~~~~~~~~~~~~m~~~~~~~~P 282 (546)
T PRK14869 220 LAKENGVTVISTPYDTFTTARL--I---NQSIPVSYIMTTE------------DLVTFSKDDYLEDVKEVMLKSRYRSYP 282 (546)
T ss_pred HHHhCCCeEEEecccHHHHHHH--h---hcCCCHHHhccCC------------CcEEECCCCcHHHHHHHHHhcCCCceE
Confidence 2258899999998777552 2 13679999998 4 889999999999999999999999999
Q ss_pred EEeCCCCeEEEEEeHHHHHHHhH
Q 013373 401 VVAGEEAEVVGVITLRDVISCFI 423 (444)
Q Consensus 401 VVd~~~~~lvGvIT~~DIl~~l~ 423 (444)
|||++| +++|+||++|+++...
T Consensus 283 Vvd~~g-~lvGiit~~dl~~~~~ 304 (546)
T PRK14869 283 VVDEDG-KVVGVISRYHLLSPVR 304 (546)
T ss_pred EEcCCC-CEEEEEEHHHhhcccc
Confidence 999987 9999999999998543
No 11
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.56 E-value=4.3e-14 Score=114.04 Aligned_cols=95 Identities=19% Similarity=0.341 Sum_probs=85.8
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++++++++.++.+.|.+++++++||+|+++++++|++|.+|+.+.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------ 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------ 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence 57899999999999999999999999999962489999999999976421
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCC-CCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGE-EAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~-~~~lvGvIT~~DIl~ 420 (444)
+.++.+++++.+++++|.+++++++||+|++ | +++|+||.+||++
T Consensus 52 --~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~-~~~giit~~d~~~ 97 (98)
T cd04618 52 --LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTG-TGLYILTSRRILK 97 (98)
T ss_pred --eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCC-CceEEeehhhhhc
Confidence 4789999999999999999999999999987 6 9999999999985
No 12
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.56 E-value=7.7e-14 Score=134.59 Aligned_cols=132 Identities=17% Similarity=0.325 Sum_probs=113.1
Q ss_pred ccCcccccccCCCCCC-CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373 277 ASQPISDLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV 355 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~-~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v 355 (444)
...++++ +|+++ +++++..+.++.++++.+.+++++++||++++.++++|+++.+|++..+.... ...++
T Consensus 65 ~~~~V~d----iMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~-----~~~~l 135 (292)
T PRK15094 65 ADQRVRD----IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA-----EAFSM 135 (292)
T ss_pred CCCEEeE----EccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccC-----CcCCH
Confidence 5678999 79863 58999999999999999999999999999862378999999999987653211 12357
Q ss_pred HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccch
Q 013373 356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD 431 (444)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~ 431 (444)
.++|. ++.++++++++.++++.|.+++.+.++|+|+.| .++|+||+.||+..++++..+.|+
T Consensus 136 ~~l~r-------------~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G-~viGiVTleDIle~ivGei~de~d 197 (292)
T PRK15094 136 DKVLR-------------QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFG-GVSGLVTIEDILELIVGEIEDEYD 197 (292)
T ss_pred HHHcC-------------CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCC-CEEEEeEHHHHHHHHhCCCccccc
Confidence 88886 567999999999999999999999999999988 899999999999999987666555
No 13
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=1.2e-13 Score=115.47 Aligned_cols=119 Identities=20% Similarity=0.370 Sum_probs=95.1
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.+++++.++++.|.+++++.+||+++ +|+++|+++.+|++.++..... . ....++.+++.... ...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~-~-~~~~~~~~~~~~~~------~~~ 72 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAY-N-NLDLTVGEALERRS------QDF 72 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCcc-c-cccCCHHHHHhhcc------cCC
Confidence 5789999999999999999999999999998 8999999999999987543211 1 11234554432100 011
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 421 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~ 421 (444)
.++.++.+++++.++++.|.+++.+++||+|+++ +++|+||++|++++
T Consensus 73 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~-~~~Givt~~di~~~ 120 (120)
T cd04641 73 EGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENK-RVEGIISLSDILQF 120 (120)
T ss_pred CCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCC-CEEEEEEHHHhhcC
Confidence 3678999999999999999999999999999887 99999999999863
No 14
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=2.8e-13 Score=111.98 Aligned_cols=111 Identities=23% Similarity=0.394 Sum_probs=96.4
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK 371 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~ 371 (444)
++.++.+++++.++++.|.+++++.+||+|+ + ++++|+++.+|+++.+.... ......++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~~G~v~~~dl~~~~~~~~--~~~~~~~v~~~~~~---------- 68 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR-RESDAYGIVTMRDILKKVVAEG--RDPDRVNVYEIMTK---------- 68 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC-CCCcEEEEEehHHHHHHHHhCC--CCCCccCHHHHhcC----------
Confidence 5788999999999999999999999999997 6 89999999999988654211 11234679999974
Q ss_pred CCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 372 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 372 ~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++++++++.++++.|.+++.+.+||+|+ + +++|+||+.||++
T Consensus 69 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~-~~~Gvi~~~dl~~ 113 (114)
T cd04630 69 --PLISVSPDMDIKYCARLMERTNIRRAPVVEN-N-ELIGIISLTDIFL 113 (114)
T ss_pred --CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-C-EEEEEEEHHHhhc
Confidence 7899999999999999999999999999998 6 9999999999985
No 15
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.53 E-value=2.6e-13 Score=113.07 Aligned_cols=114 Identities=20% Similarity=0.294 Sum_probs=96.9
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.+++++.++++.|..++.+.+||+|+ +++++|+++..|+++...... .....++.++|.. .
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~Givt~~dl~~~~~~~~---~~~~~~~~~~~~~----------~ 67 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE-DGDLVGVVSRKDLLKASIGGA---DLQKVPVGVIMTR----------M 67 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHcCC---CccCCCHHHHhCC----------C
Confidence 5789999999999999999999999999997 789999999999988764211 1235578888862 0
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCC--CeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE--AEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~--~~lvGvIT~~DIl~ 420 (444)
.++.++++++++.+++++|.+++++++||||+++ ++++|+||++||++
T Consensus 68 ~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 68 PNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 2578999999999999999999999999999872 39999999999875
No 16
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.52 E-value=8.4e-14 Score=116.92 Aligned_cols=134 Identities=24% Similarity=0.386 Sum_probs=112.6
Q ss_pred chhHHhhhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcC
Q 013373 188 EDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (444)
Q Consensus 188 ~~~~~~l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~ 267 (444)
..+++.+.+.+. ...++..+|. .|++.+.+++++.++.++|.++|++.+||++. ++++|-+|..+|++.+.+.
T Consensus 51 k~Il~aL~e~e~-~~ita~~iM~----spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~ 123 (187)
T COG3620 51 KRILEALEEAEK-TRITAKTIMH----SPVVSVSPDDSISDVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEG 123 (187)
T ss_pred HHHHHHHHHhhc-ceEeHhhhcc----CCeeEECchhhHHHHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhcc
Confidence 445666665554 5678899999 88999999999999999999999999999997 6999999999999998765
Q ss_pred CCCCcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373 268 KGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 268 ~~~~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
. +.+....+++ +|.. ++.+|++++++..+..++..+ .++.|++ +|+++||||+.|+++++.
T Consensus 124 ~-----e~i~~~~vr~----vM~e-~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e--~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 124 M-----ESIRSLRVRE----VMGE-PFPTVSPDESLNVISQLLEEH--PAVLVVE--NGKVVGIITKADIMKLLA 184 (187)
T ss_pred c-----cchhhhhHHH----HhcC-CCCcCCCCCCHHHHHHHHhhC--CeEEEEe--CCceEEEEeHHHHHHHHh
Confidence 3 3346678888 8985 899999999998887777654 4577776 799999999999998865
No 17
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.52 E-value=3e-13 Score=136.59 Aligned_cols=130 Identities=18% Similarity=0.318 Sum_probs=113.6
Q ss_pred ccCcccccccCCCCCC-CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373 277 ASQPISDLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV 355 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~-~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v 355 (444)
.+.++++ +|+++ ++++++.++++.++++.+.+++++++||++++.++++|+++.+|++..+.. ...++
T Consensus 189 ~~~~v~d----iMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-------~~~~l 257 (408)
T TIGR03520 189 GNTDTKQ----VMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-------KNFDW 257 (408)
T ss_pred CCCEeee----eCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-------CCCCH
Confidence 5678999 89863 689999999999999999999999999998644799999999999876432 12357
Q ss_pred HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccch
Q 013373 356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD 431 (444)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~ 431 (444)
.++|+ ++.++++++++.++++.|.+++.|..+|+|+.| .++|+||..||++.++++..+.++
T Consensus 258 ~~~~~-------------~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G-~~~GiVT~eDileeivgei~de~d 319 (408)
T TIGR03520 258 QSLLR-------------EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYG-GTSGLVTLEDIIEEIVGDISDEFD 319 (408)
T ss_pred HHHcC-------------CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCC-CEEEEEEHHHHHHHHhCCCCCcCC
Confidence 78886 789999999999999999999999999999998 999999999999999987665544
No 18
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=3.5e-13 Score=112.58 Aligned_cols=117 Identities=15% Similarity=0.211 Sum_probs=92.8
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccccccc-CcccccccCCCCCCCc
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS-QPISDLGLPFMSSDEV 294 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~-~~v~~l~l~im~~~~~ 294 (444)
+++++.+++++.+|++.|.+++++++||+|++ ++++|+++..|+..++..+........+.. ..... +|.. ++
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~ 75 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRS----QDFE-GV 75 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcc----cCCC-CC
Confidence 57899999999999999999999999999976 899999999999986643311010000000 11122 3443 67
Q ss_pred eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 76 ~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~~~Givt~~di~~ 119 (120)
T cd04641 76 RTCSPDDCLRTIFDLIVKARVHRLVVVDE-NKRVEGIISLSDILQ 119 (120)
T ss_pred eEEcCCCcHHHHHHHHHhcCccEEEEECC-CCCEEEEEEHHHhhc
Confidence 89999999999999999999999999997 789999999999875
No 19
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.51 E-value=4e-13 Score=112.64 Aligned_cols=114 Identities=26% Similarity=0.467 Sum_probs=97.3
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc-------ccccCcHHHHhcccCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS-------NFRQLTVRDFMNAVVPT 365 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~-------~~~~~~v~~~m~~~~~~ 365 (444)
++.++.+++++.++.+.|.+++++++||+++ +|+++|+++.+|+++.+....... .....++.++|..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---- 77 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDG-DRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSP---- 77 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECC-CCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccC----
Confidence 6789999999999999999999999999997 799999999999987764321100 0124468888874
Q ss_pred CCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 366 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 366 ~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+++.+++||+|++| +++|+||..|+++
T Consensus 78 --------~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g-~~~Gvit~~di~~ 123 (124)
T cd04600 78 --------PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDR-RLVGIVTQTDLIA 123 (124)
T ss_pred --------CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCC-CEEEEEEhHHhhc
Confidence 789999999999999999999999999999877 9999999999986
No 20
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.50 E-value=1.6e-13 Score=115.76 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=96.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.+++++.++++.|.+++++.+||+|+ +++++|+++.+|++..+..... ....++.++|..
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-~~~~~Gii~~~dl~~~~~~~~~---~~~~~v~~im~~----------- 67 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDE-SGKILGMVTLGNLLSSLSSGKV---QPSDPVSKALYK----------- 67 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHHhcc---CCCCcHHHHhhc-----------
Confidence 6789999999999999999999999999997 7899999999999876543211 135689999985
Q ss_pred CCCeEecCCCCHHHHHHHHH---------hcCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013373 373 NPPITCKLESTLGSVIHSLA---------SKSVHRIYVVAGEEAEVVGVITLRDVISCF 422 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~---------~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l 422 (444)
++.++.+++++.++.++|. +.+.+++||+|++| +++||||.+||++++
T Consensus 68 -~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~Givt~~Dl~~~~ 124 (124)
T cd04608 68 -QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQE-KPIGIVTKIDLLSYI 124 (124)
T ss_pred -cceecCCCCCHHHHHhhcccCCceEEEecccccccccccccc-ceEEEEehhHhhhhC
Confidence 8899999999999999653 34678889998877 999999999999864
No 21
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=6.6e-13 Score=109.53 Aligned_cols=110 Identities=28% Similarity=0.460 Sum_probs=95.8
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
...++.+++++.++++.|.+.+.+.++|+++ +++++|+++.+|+++.+..... ...++.++|..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~~----~~~~v~~~~~~----------- 66 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDE-NGRLLGTVTDGDIRRALLKGLS----LDDPVSEVMNR----------- 66 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECC-CCCEEEEEEcHHHHHHHhcCCC----cCCCHHHhhcC-----------
Confidence 3577899999999999999999999999997 7999999999999876543211 23578999974
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+++.+++||+|+++ +++|+||.+||+.
T Consensus 67 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvit~~di~~ 112 (113)
T cd04607 67 -NPITAKVGSSREEILALMRERSIRHLPILDEEG-RVVGLATLDDLLS 112 (113)
T ss_pred -CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCC-CEEEEEEhHHhcc
Confidence 788999999999999999999999999999887 9999999999974
No 22
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=8e-13 Score=108.61 Aligned_cols=111 Identities=27% Similarity=0.432 Sum_probs=96.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.+++++.++.++++.|.+++++.+||+++ +++++|+++..|+++.+..... .....++.++|..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~--~~~~~~~~~~~~~----------- 67 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD-GGRLVGIFSERDIVRKVALRGA--SALDTPVSEIMTR----------- 67 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEehHHHHHHHhhcCC--CccccCHHHhcCC-----------
Confidence 5778899999999999999999999999997 7899999999999987653211 1124578999874
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+.+.+++||+++ + +++|+||..||++
T Consensus 68 -~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~-~~~Gvit~~di~~ 112 (113)
T cd04623 68 -NVITVTPDDTVDEAMALMTERRFRHLPVVDG-G-KLVGIVSIGDVVK 112 (113)
T ss_pred -CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-C-EEEEEEEHHHhhc
Confidence 7899999999999999999999999999998 6 9999999999986
No 23
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.49 E-value=7.2e-13 Score=109.66 Aligned_cols=111 Identities=20% Similarity=0.314 Sum_probs=96.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.+++++.++.+.|.+.+++.+||+|+ +++++|+++.+|+++.+..... ....++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~---~~~~~~~~~~~~----------- 66 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR-DGGVVGIITLPDLLRALEADEA---GEPSAVDEVATP----------- 66 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-CCCEEEEEEHHHHHHHHhcccc---cccccHHHhccC-----------
Confidence 4678899999999999999999999999997 7999999999999987643211 123458888874
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCC--CCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGE--EAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~--~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+++.+++||+|++ + +++|+||.+||++
T Consensus 67 -~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~-~~~Gvit~~di~~ 114 (115)
T cd04593 67 -PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPG-QVLGLLTRENVLL 114 (115)
T ss_pred -CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCC-eEEEEEEhHHhhc
Confidence 78999999999999999999999999999987 6 9999999999986
No 24
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.49 E-value=6e-13 Score=136.00 Aligned_cols=121 Identities=21% Similarity=0.297 Sum_probs=106.5
Q ss_pred cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013373 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD 357 (444)
Q Consensus 278 ~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~ 357 (444)
..++.+ +|.. +++++.+++++.++++.|.+++++.+||+|+ +++++|+||.+|+... . ...++.+
T Consensus 88 ~VKv~~----iMi~-~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-~gklvGIVT~rDL~~~--~-------~~~~V~d 152 (479)
T PRK07807 88 WVKSRD----LVFD-TPVTLSPDDTVGDALALLPKRAHGAVVVVDE-EGRPVGVVTEADCAGV--D-------RFTQVRD 152 (479)
T ss_pred hccccc----cccc-CCeEECCCCCHHHHHHHHHhcCCceEEEECC-CCeEEEEEeHHHHhcC--c-------cCCCHHH
Confidence 345666 6775 8999999999999999999999999999997 8999999999999543 1 1247999
Q ss_pred HhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCC
Q 013373 358 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP 426 (444)
Q Consensus 358 ~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~ 426 (444)
+|.. +++++++++++.+++++|.+++++++||+|+++ +++|+||++||++.....|
T Consensus 153 iMt~------------~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g-~lvGIIT~~DIl~~~~~~~ 208 (479)
T PRK07807 153 VMST------------DLVTLPAGTDPREAFDLLEAARVKLAPVVDADG-RLVGVLTRTGALRATIYTP 208 (479)
T ss_pred hccC------------CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCC-eEEEEEEHHHHHHHhhCCc
Confidence 9984 899999999999999999999999999999887 9999999999999887654
No 25
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=3.4e-13 Score=113.73 Aligned_cols=123 Identities=42% Similarity=0.668 Sum_probs=92.6
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC--CCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP--DSG 370 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~--~~~ 370 (444)
.+.++++++++.++++.|.+++++.+||+|+ +++++|+++..|+++........ ...+...+++. ..+.. ...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~-~~~~~Giv~~~dl~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~ 76 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE-KGKLIGNISASDLKGLLLSPDDL---LLYRTITFKEL-SEKFTDSDGV 76 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECC-CCcEEEEEEHHHhhhhhcCcchh---hcccchhhhhh-hhhccccccc
Confidence 5788999999999999999999999999998 79999999999998876432110 01111100000 00000 000
Q ss_pred CCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373 371 KVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 421 (444)
Q Consensus 371 ~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~ 421 (444)
...++.++++++++.++++.|.+++.+++||+|+++ +++|+||..||+++
T Consensus 77 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~-~~~Giit~~dil~~ 126 (126)
T cd04642 77 KSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEG-KPIGVITLTDIISI 126 (126)
T ss_pred ccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCC-CEEEEEEHHHHhcC
Confidence 124789999999999999999999999999999887 99999999999874
No 26
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=7.4e-13 Score=110.64 Aligned_cols=115 Identities=23% Similarity=0.354 Sum_probs=98.0
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc------ccccCcHHHHhcccCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS------NFRQLTVRDFMNAVVPTT 366 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~------~~~~~~v~~~m~~~~~~~ 366 (444)
++.++.+++++.++.+.|.+.+++.+||+++ +|+++|+++..|+++.+....... .....++.+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----- 75 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE-DGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKT----- 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECC-CCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCC-----
Confidence 5788999999999999999999999999997 799999999999988764311100 1135578888874
Q ss_pred CCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373 367 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 421 (444)
Q Consensus 367 ~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~ 421 (444)
++.++.+++++.++++.|.+.+.+.+||+|+++ +++|+||..|++++
T Consensus 76 -------~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvit~~dl~~~ 122 (122)
T cd04803 76 -------DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKG-TLVGIITRSDFLRL 122 (122)
T ss_pred -------CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCC-CEEEEEEHHHhhcC
Confidence 789999999999999999999999999999887 99999999999863
No 27
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=8.6e-13 Score=108.67 Aligned_cols=111 Identities=23% Similarity=0.394 Sum_probs=96.5
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+++.+|+++.+..... +...++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~~~~---~~~~~i~~~~~~----------- 66 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALESEE---LKDAKVREVMNS----------- 66 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhhhhh---hcCCcHHHhccC-----------
Confidence 3578899999999999999999999999997 7899999999999876433222 234578899874
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+++.+.+||+|++| +++|+||..||++
T Consensus 67 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g-~~~Gvvt~~dl~~ 112 (113)
T cd04615 67 -PVITIDANDSIAKARWLMSNNNISRLPVLDDKG-KVGGIVTEDDILR 112 (113)
T ss_pred -CceEECCCCcHHHHHHHHHHcCCCeeeEECCCC-eEEEEEEHHHhhc
Confidence 789999999999999999999999999999887 9999999999975
No 28
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=7.8e-13 Score=111.02 Aligned_cols=115 Identities=29% Similarity=0.400 Sum_probs=97.7
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhcCCcccc--------ccccCcHHHHhcccC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFS--------NFRQLTVRDFMNAVV 363 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~~~~~~~--------~~~~~~v~~~m~~~~ 363 (444)
++.++.++.++.+++++|.+.+...+||+++ + ++++|+++..|++.++.....+. .....++.+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~-~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE-GTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTR-- 78 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeC-CCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcC--
Confidence 5778899999999999999999999999997 5 99999999999998765322111 1123578888874
Q ss_pred CCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373 364 PTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 421 (444)
Q Consensus 364 ~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~ 421 (444)
++.++++++++.++++.|.+.+.+.+||+|+++ +++|+||..||+++
T Consensus 79 ----------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~-~~~Gvit~~di~~~ 125 (125)
T cd04631 79 ----------NVITITPDDSIKDAAELMLEKRVGGLPVVDDDG-KLVGIVTERDLLKA 125 (125)
T ss_pred ----------CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCC-cEEEEEEHHHhhcC
Confidence 789999999999999999999999999999877 99999999999863
No 29
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=7.1e-13 Score=108.80 Aligned_cols=109 Identities=23% Similarity=0.312 Sum_probs=95.9
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.+++++.++++.|.+.+...+||+++ +++++|+++..|+.+.+.... ...++.++|..
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~-----~~~~v~~~~~~----------- 64 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEGG-----PDAPVRGVMRR----------- 64 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhcC-----CCCcHHHHhcC-----------
Confidence 5678899999999999999889999999997 799999999999988764321 23478899874
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+++..++||+|+++ +++|+||.+|+.+
T Consensus 65 -~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~G~it~~dl~~ 110 (111)
T cd04639 65 -DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSG-RLVGLVTLENVGE 110 (111)
T ss_pred -CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCC-CEEEEEEHHHhhc
Confidence 789999999999999999999999999999877 9999999999976
No 30
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=5.2e-13 Score=107.70 Aligned_cols=94 Identities=15% Similarity=0.227 Sum_probs=84.6
Q ss_pred ceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceE
Q 013373 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 296 (444)
Q Consensus 217 ~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~ 296 (444)
++++++++++.+|.+.|.+++++++||+|+++++++|++|..|+.+.+ . +.+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~-------------------------~---~~~ 54 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL-------------------------R---LVS 54 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-------------------------e---eEE
Confidence 789999999999999999999999999997437899999999996521 1 678
Q ss_pred ecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHH
Q 013373 297 IQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRH 339 (444)
Q Consensus 297 v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~ 339 (444)
+.+++++.+|++.|.+++++++||+++ + |+++|++|.+|+++
T Consensus 55 v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~~giit~~d~~~ 97 (98)
T cd04618 55 IHPERSLFDAALLLLKNKIHRLPVIDP-STGTGLYILTSRRILK 97 (98)
T ss_pred eCCCCcHHHHHHHHHHCCCCEeeEEEC-CCCCceEEeehhhhhc
Confidence 999999999999999999999999997 6 89999999999875
No 31
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=8.6e-13 Score=107.97 Aligned_cols=105 Identities=22% Similarity=0.382 Sum_probs=94.7
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.+++++.++.+.|.+++.+.+||+|+ +++++|+++..|++... ...++.++|..
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~---------~~~~v~~~~~~----------- 61 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVAGKD---------PDTTIEKVMTK----------- 61 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECC-CCeEEEEecHHHHhccc---------ccccHHHHhcC-----------
Confidence 6789999999999999999999999999997 89999999999997531 13478999974
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+++.+.+||+|+++ +++|+||..|+++
T Consensus 62 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~G~it~~di~~ 107 (108)
T cd04596 62 -NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNK-KLLGIISRQDVLK 107 (108)
T ss_pred -CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCC-CEEEEEEHHHhhc
Confidence 789999999999999999999999999999887 9999999999985
No 32
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=7.2e-13 Score=109.15 Aligned_cols=108 Identities=11% Similarity=0.226 Sum_probs=93.3
Q ss_pred ceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceE
Q 013373 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 296 (444)
Q Consensus 217 ~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~ 296 (444)
++++.+++++.+|++.|.+++.+.+||+|++ ++++|+++..|+.+..... ....++.+ +|.. ++.+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~--------~~~~~v~~----~~~~-~~~~ 68 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPND--------YETLKVCE----VYIV-PVPI 68 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhcccc--------ccccChhh----eeec-CCcE
Confidence 6788999999999999999999999999976 8999999999998742111 12356888 6765 7889
Q ss_pred ecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 297 v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
+.+++++.+++++|.+++.+.+||+|+ +++++|+||.+|+++
T Consensus 69 v~~~~~l~~al~~m~~~~~~~lpVvd~-~~~~~Giit~~di~~ 110 (111)
T cd04603 69 VYCDSKVTDLLRIFRETEPPVVAVVDK-EGKLVGTIYERELLR 110 (111)
T ss_pred ECCCCcHHHHHHHHHHcCCCeEEEEcC-CCeEEEEEEhHHhhc
Confidence 999999999999999999999999997 799999999999975
No 33
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.47 E-value=1.3e-12 Score=129.85 Aligned_cols=199 Identities=18% Similarity=0.282 Sum_probs=151.4
Q ss_pred CCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHhhhhHHhhhcccccccccccc
Q 013373 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG 133 (444)
Q Consensus 54 ~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~~~~~~~~~~~~~~~~~~~~~ 133 (444)
.++.+.+.+..++.++...|.+++++.+||.|.+. ++...++|..-|+.++......-
T Consensus 161 ~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~-------~~v~~ilt~~rIl~~l~~~~~~~--------------- 218 (381)
T KOG1764|consen 161 KPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPET-------GEVLYILTQRRILKFLWLNGRLL--------------- 218 (381)
T ss_pred CCCceeecCcHHHHHHHHHHHhCCccceeeecccc-------cceeeehhHHHHHHHHHHhhccc---------------
Confidence 33449999999999999999999999999999666 69999999999999874332100
Q ss_pred cccccccchhcccCCCcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhhhccCCCCCCcHHHhhhhcC
Q 013373 134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR 213 (444)
Q Consensus 134 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~di~~~~~ 213 (444)
. .+.+...++.|+-. ..
T Consensus 219 -----------------------------------------------------~---------~~~~l~~s~~dl~i-g~ 235 (381)
T KOG1764|consen 219 -----------------------------------------------------P---------LPSLLSKSLSDLGI-GT 235 (381)
T ss_pred -----------------------------------------------------c---------cHHHhhCCHHHhCc-ch
Confidence 0 01112333444433 23
Q ss_pred CCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccccc-ccCcccccccCCCCCC
Q 013373 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII-ASQPISDLGLPFMSSD 292 (444)
Q Consensus 214 ~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~-~~~~v~~l~l~im~~~ 292 (444)
|..+..+..++++.+|++.|..++++.+||+|.. |+.+|+++..|+........ ...+... ........ -...+
T Consensus 236 ~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~-~~~~~~~~l~~~~~~~---~~~~~ 310 (381)
T KOG1764|consen 236 WSNIASISEDTPVIEALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGT-YNNLDLSCLSEALSHR---PIRFE 310 (381)
T ss_pred hhhheeecCCCcHHHHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCc-cCccchhHHHHHhhhc---ccccC
Confidence 4568999999999999999999999999999987 78899999999988776542 1111111 00011111 11224
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
.+++|.+++++.+++..|..+++++++|+|+ +|.++|++|.+|++.++..
T Consensus 311 ~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~-~~~l~GvvSLsDil~~l~~ 360 (381)
T KOG1764|consen 311 GVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE-DGVLVGVISLSDILSYLVL 360 (381)
T ss_pred ccEEEeecchHHHHHHHHHhcCceEEEEEcC-CCcEEEEeeHHHHHHHHHh
Confidence 6899999999999999999999999999998 8999999999999998763
No 34
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=1e-12 Score=108.63 Aligned_cols=112 Identities=25% Similarity=0.376 Sum_probs=94.5
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccccc---ccCcHHHHhcccCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF---RQLTVRDFMNAVVPTTPDS 369 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~---~~~~v~~~m~~~~~~~~~~ 369 (444)
++.++.+++++.++++.|.+++++.+||+|+ +++++|+++.+|+++.+...... .. ...++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~-~~~~~~~~~v~~~~~~-------- 71 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKLKGLENL-DLERLVDLKVIDVMNT-------- 71 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHhhccCch-hHHHHhCCcHHHHhcC--------
Confidence 5788999999999999999999999999997 78999999999998876532110 11 14578888874
Q ss_pred CCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373 370 GKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 421 (444)
Q Consensus 370 ~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~ 421 (444)
++.++.+++++.++++.|.+.+ .+||+|+++ +++|+||..|++++
T Consensus 72 ----~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~-~~~Gvit~~dil~~ 116 (116)
T cd04643 72 ----DVPVIIDDADIEEILHLLIDQP--FLPVVDDDG-IFIGIITRREILKA 116 (116)
T ss_pred ----CCceecCCCCHHHHHHHHhcCC--ceeEEeCCC-eEEEEEEHHHhhcC
Confidence 7899999999999999998865 599999887 99999999999863
No 35
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=6.6e-13 Score=111.41 Aligned_cols=113 Identities=18% Similarity=0.261 Sum_probs=90.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhcCCcccc---cc---ccCcHHHHhcccCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFS---NF---RQLTVRDFMNAVVPT 365 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~~~~~~~---~~---~~~~v~~~m~~~~~~ 365 (444)
++.++.+++++.++++.|.+++++++||+|+ + ++++|+++.+|+++++....... .. ....+.++|.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE-ESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGT----- 75 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeC-CCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCc-----
Confidence 5788999999999999999999999999997 6 89999999999988653211000 00 0001112333
Q ss_pred CCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHH
Q 013373 366 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVI 419 (444)
Q Consensus 366 ~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl 419 (444)
.++.++++++++.++++.|.+++.+++||+|+++ +++|+||.+||-
T Consensus 76 -------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~vGiit~~di~ 121 (123)
T cd04627 76 -------SDVISINGDQPLIDALHLMHNEGISSVAVVDNQG-NLIGNISVTDVR 121 (123)
T ss_pred -------CCceEeCCCCCHHHHHHHHHHcCCceEEEECCCC-cEEEEEeHHHhh
Confidence 3788999999999999999999999999999887 999999999984
No 36
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.47 E-value=1.1e-12 Score=106.66 Aligned_cols=104 Identities=19% Similarity=0.296 Sum_probs=92.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.+++++.++.++++.|.+++.+.+||+|+ +|+++|+++..|++.... .++.++|..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~~~~~----------~~~~~~~~~----------- 59 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA-DGQPLGFVTRREAARASG----------GCCGDHAEP----------- 59 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHHHhcc----------cchhhhccc-----------
Confidence 5678899999999999999999999999987 799999999999986521 247788763
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
.+.++.+++++.++++.|.+++...+||+|+++ +++|+||++|+++
T Consensus 60 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvi~~~~l~~ 105 (106)
T cd04582 60 -FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDG-RYVGEVTQRSIAD 105 (106)
T ss_pred -CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCC-cEEEEEEHHHhhc
Confidence 668899999999999999999999999999887 9999999999986
No 37
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=1.7e-12 Score=106.28 Aligned_cols=107 Identities=29% Similarity=0.445 Sum_probs=95.1
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.+++++.++++.|.+++++.+||+|+ +|+++|+++..|+++.+... ..++.++|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~-------~~~~~~~~~~----------- 63 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDE-DGRLVGIVTSWDISKAVARD-------KKSVEDIMTR----------- 63 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECC-CCcEEEEEeHHHHHHHHhhC-------ccCHHHhcCC-----------
Confidence 6788999999999999999999999999997 79999999999998765431 1258888863
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+++.+.+||+++++ +++|+||+.||++
T Consensus 64 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~G~v~~~di~~ 109 (110)
T cd04605 64 -NVITATPDEPIDVAARKMERHNISALPVVDAEN-RVIGIITSEDISK 109 (110)
T ss_pred -CCeEECCCCcHHHHHHHHHHhCCCEEeEECCCC-cEEEEEEHHHhhh
Confidence 788999999999999999999999999999887 9999999999975
No 38
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=6.1e-13 Score=109.91 Aligned_cols=111 Identities=23% Similarity=0.328 Sum_probs=93.9
Q ss_pred CceEecCCCcHHHHHHHHHHcC-CCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNN-IGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK 371 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~-~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~ 371 (444)
++.+++++.++.++++.|.+++ .+.+||+|+ +++++|+++.+|+++..... ....++.++|...
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~-----~~~~~v~~~~~~~--------- 66 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPTSQ-----WAQTTVIQVMTPA--------- 66 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHHhh-----ccccchhhhhccc---------
Confidence 5778999999999999997775 889999997 79999999999998875421 1245788888631
Q ss_pred CCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 372 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 372 ~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
.++.++.+++++.++++.|.+++.+++||+|+++ +++|+||.+||++
T Consensus 67 -~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~-~~~Gvl~~~di~~ 113 (114)
T cd04801 67 -AKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSG-QVIGLITEADLLR 113 (114)
T ss_pred -ccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCC-cEEEEEeccceec
Confidence 1357899999999999999999999999999877 9999999999875
No 39
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.47 E-value=1.4e-12 Score=111.70 Aligned_cols=113 Identities=22% Similarity=0.345 Sum_probs=96.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc--------------------cccc
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS--------------------NFRQ 352 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~--------------------~~~~ 352 (444)
++.++++++++.++++.|.+++.+.+||+|+ +++++|+++..|+++.+....... ....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP 80 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccc
Confidence 5678999999999999999999999999997 799999999999998764211100 0124
Q ss_pred CcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 353 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
.++.++|.. ++..+.+++++.++++.|.+++.+++||+++ + +++|+||.+||++
T Consensus 81 ~~v~~~~~~------------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~-~~~Gvit~~di~~ 134 (135)
T cd04621 81 LVAEDIMTE------------EIITVSPNDDVVDAAKLMLEANISGLPVVDN-D-NIVGVITKTDICR 134 (135)
T ss_pred ccHHHhcCC------------CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-C-EEEEEEEHHHHhh
Confidence 578899874 7889999999999999999999999999997 6 9999999999986
No 40
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=1.5e-12 Score=106.98 Aligned_cols=109 Identities=25% Similarity=0.370 Sum_probs=95.1
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++++++++.++++.|.+++++.+||+|+ +|+++|+++..|++.+..... ....++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~----~~~~~v~~~~~~----------- 65 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN-EEKLKGVVTFTDILDLDLFES----FLEKKVFNIVSQ----------- 65 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC-CCCEEEEEehHHhHHHHhhcc----cccCcHHHHhcC-----------
Confidence 5778999999999999999999999999997 799999999999987643211 124578898874
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+++..++||+|+ + +++|+||..||++
T Consensus 66 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~G~it~~di~~ 110 (111)
T cd04626 66 -DVFYVNEEDTIDEALDIMREKQIGRLPVVDD-N-KLIGVVRTKDILD 110 (111)
T ss_pred -CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-C-EEEEEEEhHHhcc
Confidence 7889999999999999999999999999998 6 9999999999975
No 41
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.46 E-value=6.2e-13 Score=130.91 Aligned_cols=121 Identities=17% Similarity=0.255 Sum_probs=106.2
Q ss_pred cCcccccccCCCCCCC--ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373 278 SQPISDLGLPFMSSDE--VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV 355 (444)
Q Consensus 278 ~~~v~~l~l~im~~~~--~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v 355 (444)
..+|++ +|.+ + +.++++++++.++.+.|.+++...+||+|+ +|+++|+|+..|+.+.+.... ....++
T Consensus 196 ~~~V~~----im~~-~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~~~----~~~~~v 265 (321)
T PRK11543 196 LNKVHH----LMRR-DDAIPQVALTASVMDAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVGGG----ALTTPV 265 (321)
T ss_pred HhHHHH----Hhcc-CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhCCC----CcCCcH
Confidence 567888 7876 5 999999999999999999999999999998 899999999999988664311 124578
Q ss_pred HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373 356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 421 (444)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~ 421 (444)
.++|.. ++.++.+++++.++++.|.+++..++||||+++ +++|+||+.||++.
T Consensus 266 ~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~lvGvIt~~di~~~ 318 (321)
T PRK11543 266 NEAMTR------------GGTTLQAQSRAIDAKEILMKRKITAAPVVDENG-KLTGAINLQDFYQA 318 (321)
T ss_pred HHhcCC------------CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHhc
Confidence 999984 789999999999999999999999999999887 99999999999864
No 42
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.46 E-value=7.9e-13 Score=130.40 Aligned_cols=123 Identities=20% Similarity=0.353 Sum_probs=104.2
Q ss_pred ccCcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373 277 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV 355 (444)
Q Consensus 277 ~~~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v 355 (444)
...++++ +|.+ +++.++++++++.++++.|.+++.+.+||+|+ +|+++|++|.+|+++.+.... .+...++
T Consensus 200 ~~~~V~d----im~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-~g~lvGivt~~Dl~~~~~~~~---~~~~~~v 271 (326)
T PRK10892 200 LLLRVSD----IMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD-NMKIEGIFTDGDLRRVFDMGI---DLRQASI 271 (326)
T ss_pred ccCcHHH----HhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEecHHHHHHHhcCC---CcccCCH
Confidence 3446777 6863 27899999999999999999999888888887 899999999999987654211 1235689
Q ss_pred HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373 356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 421 (444)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~ 421 (444)
.++|.. ++.++.+++++.++++.|.+++++++||+++ + +++|+||++||++.
T Consensus 272 ~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~-~lvGiit~~dil~~ 323 (326)
T PRK10892 272 ADVMTP------------GGIRVRPGILAVDALNLMQSRHITSVLVADG-D-HLLGVLHMHDLLRA 323 (326)
T ss_pred HHhcCC------------CCEEECCCCCHHHHHHHHHHCCCcEEEEeeC-C-EEEEEEEhHHhHhc
Confidence 999984 8899999999999999999999999999985 4 99999999999974
No 43
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.1e-12 Score=108.15 Aligned_cols=112 Identities=26% Similarity=0.373 Sum_probs=96.0
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.+++++.++.+.|.+++.+.+||+++ +++++|+++..|+++.+.... +......++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~-~~~~~~~~v~~~~~~----------- 68 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD-NGNLVGFLSEQDCLKQLLESS-YHCDGVATVRDIMTT----------- 68 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECC-CCeEEEEeehHHHHHHhhhhh-hccCCCccHHHHhcc-----------
Confidence 5678999999999999999989999999997 789999999999987654311 111124578999874
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+++.+++||+|+ + +++|+||..||++
T Consensus 69 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvit~~di~~ 113 (114)
T cd04629 69 -EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-G-KLVGQISRRDVLR 113 (114)
T ss_pred -CceEECCCCcHHHHHHHHHHhCCCccCEEEC-C-EEEEEEEHHHHhc
Confidence 7889999999999999999999999999998 6 9999999999986
No 44
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=2e-12 Score=106.25 Aligned_cols=110 Identities=25% Similarity=0.387 Sum_probs=96.6
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.+++++.++.+.|.+.+++.+||+++ +++++|+++..|+++.+.... ....++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~l~~~~~~~~----~~~~~v~~~~~~----------- 65 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP-DERPIGIVTERDIVRAVAAGI----DLDTPVSEIMTR----------- 65 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEeeHHHHHHHHhccC----CCccCHHHhccC-----------
Confidence 5678899999999999999999999999997 799999999999988765422 124578888874
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+++...+||+|+++ +++|++|+.|+++
T Consensus 66 -~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g-~~~Gilt~~dl~~ 111 (112)
T cd04624 66 -DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGG-ELVGVISIRDLVR 111 (112)
T ss_pred -CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCC-cEEEEEEHHHhcc
Confidence 788999999999999999999999999999887 9999999999985
No 45
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.46 E-value=1e-12 Score=131.21 Aligned_cols=182 Identities=15% Similarity=0.244 Sum_probs=137.7
Q ss_pred eEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCC---------------------ccccc
Q 013373 218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD---------------------WFDII 276 (444)
Q Consensus 218 v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~---------------------~~~~~ 276 (444)
+-......+.....++..++-++.-+..++ .++-.+..+.+.+...++.... ....+
T Consensus 69 ~~~~~~gdlFg~~~l~~~~~~~~~~~aeed--sl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~~~~~~eq~~~e~ 146 (610)
T COG2905 69 LDRLAAGDLFGFSSLFTELNKQRYMAAEED--SLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRDIADRLAEQGESEF 146 (610)
T ss_pred eeeeccCccccchhhcccCCCcceeEeecc--ceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhccchH
Confidence 333344445555556666666666666654 5777776665655544432111 00112
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013373 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR 356 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~ 356 (444)
..+.|.+ +++. ++++|++..++.+|..+|.++|++.+.++++ ++...||||.+|+........ .....+|.
T Consensus 147 ~~trv~~----~~~~-~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-~~~~~GIvT~~dl~~~v~~~g---~~~~~~V~ 217 (610)
T COG2905 147 ILTRVGE----VKTL-PAVTVSPQASIQDAARKMKDEGVSSLVVLDD-SGPLLGIVTRKDLRSRVIADG---RSKTQKVS 217 (610)
T ss_pred HHHHHHH----HhcC-CCcccCccCcHHHHHHHHHhcCCCeEEEEcC-CCCccceeehHHHHHHHHhcC---CCcccchh
Confidence 2335555 5665 8999999999999999999999999999998 899999999999988765322 23467999
Q ss_pred HHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373 357 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 357 ~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
++|+. |+++++.++.+.+|+-+|.+++++++||.++ |+++||||..||++.+.+
T Consensus 218 evmT~------------p~~svd~~~~~feAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 218 EVMTS------------PVISVDRGDFLFEAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLFSQ 271 (610)
T ss_pred hhhcc------------CceeecCcchHHHHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhhCC
Confidence 99995 9999999999999999999999999999976 599999999999998875
No 46
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.45 E-value=1.4e-12 Score=107.84 Aligned_cols=111 Identities=19% Similarity=0.419 Sum_probs=95.5
Q ss_pred ceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceE
Q 013373 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 296 (444)
Q Consensus 217 ~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~ 296 (444)
+..+.+++++.+|++.|.+++...+||+|++ +++.|+++..|+.+.+...... ....++.+ +|.. ++.+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~-----~~~~~v~~----~~~~-~~~~ 71 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGP-----GCTAPVEN----VMTR-AVVS 71 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCC-----cccCCHHH----HhcC-CCee
Confidence 6788999999999999999999999999987 8999999999998866431111 13457888 6765 7899
Q ss_pred ecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 297 v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
+.+++++.++++.|.+++...+||+|+ +++++|+|+.+|++.
T Consensus 72 v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 72 CRPGDLLHDVWQVMKQRGLKNIPVVDE-NARPLGVLNARDALK 113 (114)
T ss_pred ECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEhHhhcc
Confidence 999999999999999999999999997 789999999999864
No 47
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.45 E-value=2.3e-12 Score=105.19 Aligned_cols=106 Identities=23% Similarity=0.391 Sum_probs=94.4
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.++.++.++++.|.++++..+||+++ +++++|+++..|++..... ..++.++|..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~--------~~~v~~~~~~----------- 62 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK-DNKLLGIVSLESLEQAYKE--------AKSLEDIMLE----------- 62 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcC-CCcEEEEEEHHHHHHHhhc--------CCcHhHhhcC-----------
Confidence 5678899999999999999999999999997 7899999999999876421 2468888874
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
.+.++++++++.++++.|.+.+.+++||+|++| +++|+||..|+++
T Consensus 63 -~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g-~~~Gvit~~~l~~ 108 (109)
T cd04583 63 -DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDG-KLVGLITRSSLVD 108 (109)
T ss_pred -CceEECCCCcHHHHHHHHHHcCCceeeEECCCC-eEEEEEehHHhhc
Confidence 788999999999999999999999999999887 9999999999975
No 48
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.45 E-value=2.2e-12 Score=105.83 Aligned_cols=108 Identities=21% Similarity=0.495 Sum_probs=94.1
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK 371 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~ 371 (444)
++.++.++.++.++.+.|.+++++.+||+++ + ++++|+++..|+++...... ...++.+++.
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~-~~~~~~G~v~~~~l~~~~~~~~-----~~~~~~~~~~----------- 64 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDG-DLDNIIGVVHVKDLLRALAEGE-----EDLDLRDLLR----------- 64 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECC-CCceEEEEEEHHHHHHHHHcCC-----CcCCHHHHhc-----------
Confidence 5788999999999999999999999999997 6 89999999999998765311 1145777664
Q ss_pred CCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 372 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 372 ~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+++.+++||+|+++ +++|+||++|+++
T Consensus 65 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvit~~di~~ 110 (111)
T cd04590 65 --PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYG-GTAGLVTLEDILE 110 (111)
T ss_pred --CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCC-CEEEEeEHHHhhc
Confidence 678999999999999999999999999999887 9999999999975
No 49
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.45 E-value=1.8e-12 Score=106.60 Aligned_cols=111 Identities=25% Similarity=0.515 Sum_probs=97.1
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.+++++.++.+.|.+.+++.+||+|+ +++++|+++..|+.+++.+... ....++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~~---~~~~~v~~~~~~----------- 66 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD-DGRLVGIVSLDDIREILFDPSL---YDLVVASDIMTK----------- 66 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECC-CCCEEEEEEHHHHHHHHhcccc---cccEEHHHhccC-----------
Confidence 5788999999999999999999999999997 7899999999999887643221 123579999974
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeC-CCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAG-EEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~-~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+.+.+++||+|+ .+ +++|++|..|++.
T Consensus 67 -~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~-~~~Gvvt~~di~~ 113 (114)
T cd04613 67 -PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPG-KLLGILSRSDLLS 113 (114)
T ss_pred -CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCC-EEEEEEEhHHhhc
Confidence 7899999999999999999999999999987 77 9999999999985
No 50
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.45 E-value=1.8e-12 Score=106.74 Aligned_cols=111 Identities=21% Similarity=0.319 Sum_probs=96.7
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++++++++.++++.|.+.+.+.+||+++ +++++|+++..++++.+..... ....++.++|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~i~~~~~~~~~---~~~~~v~~~~~~----------- 67 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE-DGRLVGIFTDGDLRRALEKGLD---ILTLPVADVMTR----------- 67 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcC-CCCEEEEechHHHHHHHhccCc---cccCCHHHhhcc-----------
Confidence 5678899999999999998888999999997 7899999999999988753221 223479999984
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|..++.+.+||+|+++ +++|+||..||++
T Consensus 68 -~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~iG~it~~di~~ 113 (114)
T cd04604 68 -NPKTIDPDALAAEALELMEENKITALPVVDDNG-RPVGVLHIHDLLR 113 (114)
T ss_pred -CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCC-CEEEEEEHHHhhc
Confidence 778999999999999999999999999999877 9999999999986
No 51
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=1.4e-12 Score=104.79 Aligned_cols=94 Identities=18% Similarity=0.366 Sum_probs=85.6
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.+++++.++++.|.+++++.+||+|+ +++++|+++.+|+++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~------------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-DGKLSGIITERDLIAKS------------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHhcCC-------------------------------
Confidence 5788999999999999999999999999997 79999999999997531
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
.+.++.+++++.++++.|.+++.+++||+|+++ +++|+||++||++
T Consensus 50 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~-~~~Giit~~di~~ 95 (96)
T cd04614 50 -EVVTATKRTTVSECAQKMKRNRIEQIPIINGND-KLIGLLRDHDLLK 95 (96)
T ss_pred -CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCC-cEEEEEEHHHhhc
Confidence 147899999999999999999999999999877 9999999999985
No 52
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=2.2e-12 Score=108.89 Aligned_cols=115 Identities=24% Similarity=0.453 Sum_probs=95.1
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcc----------ccccccCcHHHHhccc
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL----------FSNFRQLTVRDFMNAV 362 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~----------~~~~~~~~v~~~m~~~ 362 (444)
++.++.+++++.++++.|.+.+.+.+||+++ +++++|+++..|+..++..... .......++.++|..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDD-NGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS- 79 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECC-CCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC-
Confidence 5678899999999999999999999999998 7999999999999876532110 001123578888874
Q ss_pred CCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEe--CCCCeEEEEEeHHHHHHH
Q 013373 363 VPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVA--GEEAEVVGVITLRDVISC 421 (444)
Q Consensus 363 ~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd--~~~~~lvGvIT~~DIl~~ 421 (444)
+++++.+++++.++++.|.+++.+.+||++ +++ +++|+||++||+++
T Consensus 80 -----------~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~-~~~Gvit~~di~~~ 128 (128)
T cd04632 80 -----------PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDT-KVVGILTKKDVLRA 128 (128)
T ss_pred -----------CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCC-cEEEEEEhHhhhcC
Confidence 789999999999999999999999999985 355 99999999999863
No 53
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=2.7e-12 Score=106.11 Aligned_cols=110 Identities=16% Similarity=0.331 Sum_probs=91.7
Q ss_pred CceEecCCCcHHHHHHHHHHcC-CCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNN-IGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK 371 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~-~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~ 371 (444)
++.++.++.++.++++.|.+++ ...++|++ +++++|+++..|+++.+.... .....++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~~~~---~~~~~~i~~~~~~---------- 66 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE--KGRLLGIFTERDIVRLTAIGK---DLSDLPIGEVMTQ---------- 66 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC--CCcEEEEEeHHHHHHHHhcCC---CccccCHHHhcCC----------
Confidence 4678899999999999998888 56677776 589999999999998654211 1123578899874
Q ss_pred CCCCeEecCC--CCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 372 VNPPITCKLE--STLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 372 ~~~~~~v~~~--~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.++ +++.++++.|.+++.+.+||+|++| +++|+||++|+++
T Consensus 67 --~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~-~~~Gvit~~dl~~ 114 (115)
T cd04620 67 --PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQG-QLIGLVTAESIRQ 114 (115)
T ss_pred --CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCC-CEEEEEEhHHhhc
Confidence 77888877 7899999999999999999999887 9999999999986
No 54
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=2.4e-12 Score=109.46 Aligned_cols=114 Identities=25% Similarity=0.440 Sum_probs=95.8
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc-----------------ccccCcH
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS-----------------NFRQLTV 355 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~-----------------~~~~~~v 355 (444)
++.++.+++++.++++.|.+++++++||+|+ +++++|+++..|+++++....... .+...++
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN-EGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV 80 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECC-CCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence 5788999999999999999999999999998 789999999999988765321100 0111267
Q ss_pred HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373 356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 421 (444)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~ 421 (444)
.++|.. ++..+.+++++.++++.|.+.+.+++||+|+ + +++|+||..|++++
T Consensus 81 ~~~~~~------------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~-~~iGvit~~dl~~~ 132 (132)
T cd04636 81 EEIMTK------------KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-G-KLVGIISRGDIIRS 132 (132)
T ss_pred HHhccC------------CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-C-EEEEEEEHHHhhcC
Confidence 788763 7899999999999999999999999999998 6 99999999999864
No 55
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.43 E-value=5.1e-12 Score=103.66 Aligned_cols=109 Identities=28% Similarity=0.438 Sum_probs=94.8
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.+++.+.++.++.+.|.+++++.+||+++ ++++|+++..|+++.+..... ....++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~---~~~~~i~~~~~~----------- 65 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGL---DPDTPVSEVMTA----------- 65 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCC---CccCCHHHHhCC-----------
Confidence 5778999999999999999999999999984 899999999999876543222 123578999874
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+++.+++||+++ + +++|++|.+||++
T Consensus 66 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Giit~~di~~ 110 (111)
T cd04800 66 -PPITIPPDATVFEALLLMLERGIHHLPVVDD-G-RLVGVISATDLLR 110 (111)
T ss_pred -CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-C-EEEEEEEHHHhhc
Confidence 7899999999999999999999999999998 6 9999999999985
No 56
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=2.4e-12 Score=107.58 Aligned_cols=114 Identities=19% Similarity=0.371 Sum_probs=95.9
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc------ccccCcHHHHhcccCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS------NFRQLTVRDFMNAVVPTT 366 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~------~~~~~~v~~~m~~~~~~~ 366 (444)
++.++.+++++.++++.|.+.+++.+||+|+ +++++|+++..|+++......... .....++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMST----- 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcC-----
Confidence 5788999999999999999999999999997 799999999999987532110000 0134578888863
Q ss_pred CCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 367 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 367 ~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+++.+++||+|++| +++|++|..|+++
T Consensus 76 -------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g-~~~Gvit~~dl~~ 121 (122)
T cd04635 76 -------PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKD-QLVGIVDRHDVLK 121 (122)
T ss_pred -------CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCC-cEEEEEEhHHhhc
Confidence 789999999999999999999999999999887 9999999999986
No 57
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=1.8e-12 Score=110.65 Aligned_cols=113 Identities=27% Similarity=0.424 Sum_probs=95.7
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcc-------------------ccccccC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL-------------------FSNFRQL 353 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~-------------------~~~~~~~ 353 (444)
++.++.+++++.++++.|.+++++.+||+|+ +++++|+++..|+.+.+..... +......
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDD-DGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECC-CCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 6788999999999999999999999999997 7899999999999876532100 0011245
Q ss_pred cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++|.. ++.++.+++++.++++.|.+.+.+++||+| +| +++|+||+.|+++
T Consensus 82 ~v~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g-~~~Gvit~~di~~ 134 (135)
T cd04586 82 KVADVMTR------------PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GG-RLVGIVSRADLLR 134 (135)
T ss_pred CHHHHhCC------------CceEeCCCCcHHHHHHHHHHcCCCccCEec-CC-EEEEEEEhHhhhc
Confidence 78888874 789999999999999999999999999999 66 9999999999986
No 58
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=2.6e-12 Score=107.04 Aligned_cols=112 Identities=18% Similarity=0.369 Sum_probs=94.8
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCC-CCc
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS-DEV 294 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~-~~~ 294 (444)
++.++.+++++.+|++.|.++++..+||+|.+ ++++|+++..|+.+....... ....++.+ +|.. .++
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~------~~~~~~~~----~~~~~~~~ 70 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGAD------LQKVPVGV----IMTRMPNI 70 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCC------ccCCCHHH----HhCCCCCc
Confidence 57899999999999999999999999999986 799999999999887653211 13455667 5652 368
Q ss_pred eEecCCCcHHHHHHHHHHcCCCeEeEEeCCC---CeEEEEEeHHHHHH
Q 013373 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQ---KKIVGNVSIRDIRH 339 (444)
Q Consensus 295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~---~~lvGiIt~~Dll~ 339 (444)
.++.+++++.+++++|.+++++.+||+|+ + ++++|+||.+|+++
T Consensus 71 ~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 71 TTTTPEESVLEAAKKLIEHQVDSLPVVEK-VDEGLEVIGRITKTNITK 117 (118)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEeeEEeC-CCccceEEEEEEhhheec
Confidence 89999999999999999999999999997 4 69999999999864
No 59
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.42 E-value=6.4e-12 Score=102.90 Aligned_cols=108 Identities=31% Similarity=0.453 Sum_probs=94.9
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.+++++.++++.|.+++++.+||+++ ++++|+++..|+++...... ...++.+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~-----~~~~v~~~~~~----------- 63 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGL-----ELAKVKDVMTK----------- 63 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccc-----cccCHHHHhcC-----------
Confidence 5788999999999999999999999999994 89999999999998754311 12578888874
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+.+.+.+||+++++ +++|+||..|+++
T Consensus 64 -~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~i~~~dl~~ 109 (110)
T cd04588 64 -DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEG-RPVGIITRTDILR 109 (110)
T ss_pred -CceEECCCCCHHHHHHHHHhcCCCEEEEECCCC-CEEEEEEhHHhhc
Confidence 889999999999999999999999999999887 9999999999975
No 60
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=6.8e-12 Score=103.09 Aligned_cols=110 Identities=24% Similarity=0.468 Sum_probs=92.3
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
.+.++.+++++.++.+.|.+++.+.++|.+ +++++|+++..|+++.+.... ......++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~~~~--~~~~~~~v~~~~~~----------- 66 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME--RGELVGLLTFREVLQAMAQHG--AGVLDTTVRAIMNP----------- 66 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee--CCEEEEEEEHHHHHHHHHhcC--CchhcCCHHHHhCC-----------
Confidence 467889999999999999888887777665 689999999999987764210 01224579999974
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
.+.++.+++++.++++.|.+++..++||+++ + +++|+||.+||++
T Consensus 67 -~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~-~-~~~Gvvt~~dl~~ 111 (112)
T cd04625 67 -EPIVASPDDSIDEVRRLMVERHLRYLPVLDG-G-TLLGVISFHDVAK 111 (112)
T ss_pred -CCeEECCCCCHHHHHHHHHHcCCCeeeEEEC-C-EEEEEEEHHHhhc
Confidence 6789999999999999999999999999985 5 9999999999986
No 61
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=7.4e-12 Score=102.59 Aligned_cols=107 Identities=27% Similarity=0.444 Sum_probs=94.7
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++..+.++.++.+.|.+++.+.+||+|+ ++++|+++..|+.+.+.. . ....++.++|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~-~----~~~~~~~~~~~~----------- 64 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRH-G----LGHAPVKDYMST----------- 64 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhc-c----cccCcHHHHhcC-----------
Confidence 6789999999999999999999999999995 899999999999887632 1 135689999974
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.+++++|.+++.+.+||++ ++ +++|+||..|+++
T Consensus 65 -~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~-~~~Gvvt~~di~~ 109 (110)
T cd04595 65 -DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DG-RLVGIVTRTDLLR 109 (110)
T ss_pred -CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CC-EEEEEEEhHHhhc
Confidence 789999999999999999999999999999 56 9999999999975
No 62
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.42 E-value=4.2e-12 Score=104.46 Aligned_cols=111 Identities=19% Similarity=0.308 Sum_probs=94.3
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.+++++.++++.|.+++.+.+||++ +++++|+++.+|++..+...... ....++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~G~v~~~dl~~~~~~~~~~--~~~~~v~~i~~~----------- 66 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD--GNKLVGIFTSKDIALRVVAQGLD--PESTLVERVMTP----------- 66 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE--CCEEEEEEEhHHHHHHHHhcCCC--cCcCCHHHhcCC-----------
Confidence 577899999999999999999999999998 48999999999998544322211 112578999874
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+++.+++||+++++ +++|+||..||+.
T Consensus 67 -~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~-~~~Gvvs~~dl~~ 112 (113)
T cd04587 67 -NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSG-QVVGLLDVTKLTH 112 (113)
T ss_pred -CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCC-CEEEEEEHHHhcc
Confidence 788999999999999999999999999999877 9999999999975
No 63
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.41 E-value=3.6e-12 Score=130.21 Aligned_cols=121 Identities=18% Similarity=0.281 Sum_probs=104.3
Q ss_pred cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013373 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD 357 (444)
Q Consensus 278 ~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~ 357 (444)
..++.+ +|.. +++++.+++++.++++.|.+++++.+||+| +++++|+||.+|+... . ...++.+
T Consensus 87 ~VKv~e----im~~-~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD--~gklvGIVT~rDL~~~----~-----~~~~V~d 150 (475)
T TIGR01303 87 FVKSRD----LVLD-TPITLAPHDTVSDAMALIHKRAHGAAVVIL--EDRPVGLVTDSDLLGV----D-----RFTQVRD 150 (475)
T ss_pred hcchhh----cccc-CCeEECCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEEEHHHhhcC----C-----CCCCHHH
Confidence 345556 5665 789999999999999999999999999988 4789999999998533 1 1347999
Q ss_pred HhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCC
Q 013373 358 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPP 427 (444)
Q Consensus 358 ~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~ 427 (444)
+|+. +++++++++++.+++++|.+++++++||||+++ +++|+||.+||++.....|.
T Consensus 151 IMt~------------~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g-~LvGIIT~~DLl~~~~~~~~ 207 (475)
T TIGR01303 151 IMST------------DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADG-TLAGILTRTGALRATIYTPA 207 (475)
T ss_pred HccC------------CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHHHHhCCch
Confidence 9985 899999999999999999999999999999887 99999999999998876543
No 64
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.41 E-value=1.8e-12 Score=132.90 Aligned_cols=179 Identities=16% Similarity=0.247 Sum_probs=144.5
Q ss_pred hhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHh-----CCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCC
Q 013373 194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSK-----YRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (444)
Q Consensus 194 l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~-----~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~ 268 (444)
+.....+...+++++|. .++++++++.++.+|++.|.+ ++...++|+|++ ++++|+++.+|++.. .
T Consensus 122 i~~ll~~~e~tvg~iMt----~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~-~~l~GvV~l~dLl~a---~- 192 (449)
T TIGR00400 122 INLLLSYSDDSAGRIMT----IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES-KHLKGVLSIRDLILA---K- 192 (449)
T ss_pred HHHHhCCCcchHHHhCc----CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC-CeEEEEEEHHHHhcC---C-
Confidence 44445677889999998 679999999999999999975 456789999876 799999999998642 1
Q ss_pred CCCcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc
Q 013373 269 GRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 348 (444)
Q Consensus 269 ~~~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~ 348 (444)
.+.++++ +|.+ ++.++++++++.++++.|.+++...+||+|+ +|+++|+||.+|+++.+..
T Consensus 193 --------~~~~v~~----im~~-~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~-~g~lvGiIt~~Dil~~l~~----- 253 (449)
T TIGR00400 193 --------PEEILSS----IMRS-SVFSIVGVNDQEEVARLIQKYDFLAVPVVDN-EGRLVGIVTVDDIIDVIQS----- 253 (449)
T ss_pred --------CCCcHHH----HhCC-CCeeECCCCCHHHHHHHHHHcCCCEEeEEcC-CCeEEEEEEHHHHHHHHHh-----
Confidence 2357888 7876 7889999999999999999999999999998 8999999999999988763
Q ss_pred ccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013373 349 NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF 422 (444)
Q Consensus 349 ~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l 422 (444)
...+++|+. ..++..+++.+.+++..|.+++...++|. .+.|++| ..++..+
T Consensus 254 ----~~~ed~~~~------------~gv~~~~~~~l~~~~~~~~~~R~~wL~v~-----~~~~~~t-~~ii~~f 305 (449)
T TIGR00400 254 ----EATEDFYMI------------AAVKPLDDSYFDTSILVMAKNRIIWLLVL-----LVSSTFT-ATIISNY 305 (449)
T ss_pred ----hhHHHHHHh------------cCCCCCcchhhhchHHHHHHhccchHHHH-----HHHHHHH-HHHHHHH
Confidence 134788874 44555567889999999999988877764 4556666 5555544
No 65
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=3.7e-12 Score=106.80 Aligned_cols=117 Identities=23% Similarity=0.410 Sum_probs=92.2
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc-cccc--ccCcccccccCCCCCC
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-FDII--ASQPISDLGLPFMSSD 292 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~-~~~~--~~~~v~~l~l~im~~~ 292 (444)
++..+.+++++.+|++.|.+++++++||+|.+++++.|+++..|+++++..+..... .... ....+.+ +|..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~- 76 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLT----IGTS- 76 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcc----cCcC-
Confidence 578899999999999999998999999999743689999999999987654311000 0000 0011123 4554
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHH
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll 338 (444)
++.++.+++++.+|++.|.+++.+.+||+|+ +++++|+||.+|+.
T Consensus 77 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~vGiit~~di~ 121 (123)
T cd04627 77 DVISINGDQPLIDALHLMHNEGISSVAVVDN-QGNLIGNISVTDVR 121 (123)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCceEEEECC-CCcEEEEEeHHHhh
Confidence 7899999999999999999999999999997 78999999999985
No 66
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=2.3e-12 Score=108.72 Aligned_cols=112 Identities=21% Similarity=0.284 Sum_probs=91.1
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHh-----cCCccccccccCcHHHHhcccCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL-----LKPELFSNFRQLTVRDFMNAVVPTTP 367 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l-----~~~~~~~~~~~~~v~~~m~~~~~~~~ 367 (444)
++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+++..|+++.. ... .......++.++|+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~--~~~~~~~~v~~im~~------ 72 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS-DDNFIGVITAVDLLGEEPIKRIQEG--GISRSELTVADVMTP------ 72 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHhhChhhHHHHHc--CCCchheEHHHhcCc------
Confidence 4678999999999999999999999999997 78999999999998621 110 001234579999974
Q ss_pred CCCCCCCCe--Ee----cCCCCHHHHHHHHHhcCCCEEEEEeCC-CCeEEEEEeHHHHHH
Q 013373 368 DSGKVNPPI--TC----KLESTLGSVIHSLASKSVHRIYVVAGE-EAEVVGVITLRDVIS 420 (444)
Q Consensus 368 ~~~~~~~~~--~v----~~~~tl~~a~~~m~~~~~~~l~VVd~~-~~~lvGvIT~~DIl~ 420 (444)
+.. .+ .+++++.++++.|.+++.+++||+|++ + +++|+||++||++
T Consensus 73 ------~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~-~~~G~it~~di~~ 125 (126)
T cd04640 73 ------KEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHH-QIRGIISTSDIAR 125 (126)
T ss_pred ------hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCC-EEEEEEeHHHHhh
Confidence 332 23 368999999999999999999999986 6 9999999999986
No 67
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.40 E-value=9.4e-12 Score=101.93 Aligned_cols=109 Identities=25% Similarity=0.424 Sum_probs=95.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.+++++.++++.|.+++.+.+||+++ ++++|+++..|+++...... . ...++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~--~--~~~~v~~~~~~----------- 64 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGP--D--LQTPVGEVMSS----------- 64 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCC--C--CCcCHHHhcCC-----------
Confidence 4678899999999999999989999999984 89999999999988764321 0 34678999874
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
+++++.+++++.++++.|.+.+.+.+||+|++| +++|+||.+||++
T Consensus 65 -~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~-~~~Gvi~~~di~~ 110 (111)
T cd04611 65 -PLLTVPADTSLYDARQLMREHGIRHLVVVDDDG-ELLGLLSQTDLLQ 110 (111)
T ss_pred -CceEECCCCCHHHHHHHHHHcCCeEEEEECCCC-cEEEEEEhHHhhc
Confidence 789999999999999999999999999999887 9999999999985
No 68
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.40 E-value=4e-12 Score=125.37 Aligned_cols=124 Identities=17% Similarity=0.241 Sum_probs=105.7
Q ss_pred CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCc
Q 013373 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP 280 (444)
Q Consensus 201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~ 280 (444)
...+|+++|... .+++++.+++++.+|++.|.+++...+||+|++ |+++|++|..|+.+.+.... .+...+
T Consensus 200 ~~~~V~dim~~~--~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~------~~~~~~ 270 (326)
T PRK10892 200 LLLRVSDIMHTG--DEIPHVSKTASLRDALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGI------DLRQAS 270 (326)
T ss_pred ccCcHHHHhCCC--CCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCC------CcccCC
Confidence 456799999821 279999999999999999999888888888876 89999999999987654321 113467
Q ss_pred ccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHH
Q 013373 281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL 340 (444)
Q Consensus 281 v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~ 340 (444)
+.+ +|++ ++.++.+++++.++++.|.+++++.+||++ +++++|+||.+|+++.
T Consensus 271 v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~ 323 (326)
T PRK10892 271 IAD----VMTP-GGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA 323 (326)
T ss_pred HHH----hcCC-CCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence 888 7886 899999999999999999999999999998 5899999999999875
No 69
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=5.3e-12 Score=105.26 Aligned_cols=113 Identities=28% Similarity=0.438 Sum_probs=95.3
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcc-------ccccccCcHHHHhcccCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL-------FSNFRQLTVRDFMNAVVPT 365 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~-------~~~~~~~~v~~~m~~~~~~ 365 (444)
++.++.+++++.++.+.|.+++.+.+||++ +++++|+++..|+++.+..... ...+...++.++|..
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~--~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 75 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIE--GGKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTR---- 75 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEE--CCEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccC----
Confidence 577899999999999999999999999999 4899999999999876542110 001234578888864
Q ss_pred CCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373 366 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 421 (444)
Q Consensus 366 ~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~ 421 (444)
++.++.+++++.++++.|.+.+.+++||+|+ + +++|+||..|++++
T Consensus 76 --------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~dl~~~ 121 (121)
T cd04633 76 --------PVITIEPDTSVSDVASLMLENNIGGLPVVDD-G-KLVGIVTRTDILRY 121 (121)
T ss_pred --------CceEECCCCcHHHHHHHHHHcCCCcccEEEC-C-EEEEEEEHHHhhcC
Confidence 7899999999999999999999999999998 6 99999999999863
No 70
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.40 E-value=1e-11 Score=101.94 Aligned_cols=110 Identities=24% Similarity=0.347 Sum_probs=94.3
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++++++++.++.++++.|.+++...++|+|+ ++++|+++..|++........ ....++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~---~~~~~i~~~~~~----------- 65 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGL---PSSTPVGEIATF----------- 65 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCC---CCCCCHHHHhCC-----------
Confidence 4678899999999999999999999999985 789999999999887542111 124578899974
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 421 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~ 421 (444)
++..+++++++.++++.|.+++.+.+||+|+ + +++|+||..|++++
T Consensus 66 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~G~it~~dl~~~ 111 (111)
T cd04589 66 -PLITVDPDDFLFNALLLMTRHRIHRVVVREG-G-EVVGVLEQTDLLSF 111 (111)
T ss_pred -CcEEECCCCcHHHHHHHHHHhCccEEEEeeC-C-EEEEEEEhHHhhcC
Confidence 7889999999999999999999999999986 5 99999999999864
No 71
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.39 E-value=4.8e-12 Score=124.59 Aligned_cols=123 Identities=20% Similarity=0.319 Sum_probs=105.9
Q ss_pred CCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcc
Q 013373 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (444)
Q Consensus 202 ~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v 281 (444)
..+|+++|... .++.++.+++++.+|++.|.+++...+||+|++ |+++|+++..|+.+.+..... ...++
T Consensus 196 ~~~V~~im~~~--~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~-------~~~~v 265 (321)
T PRK11543 196 LNKVHHLMRRD--DAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGA-------LTTPV 265 (321)
T ss_pred HhHHHHHhccC--CCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCC-------cCCcH
Confidence 46799999821 138999999999999999999899999999987 899999999999887653211 24567
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHH
Q 013373 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL 340 (444)
Q Consensus 282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~ 340 (444)
.+ +|.+ ++.++.+++++.++++.|.+++...+||+|+ +++++|+||.+|++++
T Consensus 266 ~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 266 NE----AMTR-GGTTLQAQSRAIDAKEILMKRKITAAPVVDE-NGKLTGAINLQDFYQA 318 (321)
T ss_pred HH----hcCC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHhc
Confidence 88 7876 8899999999999999999999999999997 7899999999999865
No 72
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.39 E-value=6.9e-12 Score=128.34 Aligned_cols=115 Identities=29% Similarity=0.438 Sum_probs=101.5
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC---CeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCC
Q 013373 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ---KKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVP 364 (444)
Q Consensus 288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~---~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~ 364 (444)
.|.. +++++.+++++.++++.|.+++++++||+|+ + ++++|+|+.+|++.... ...++.++|..
T Consensus 85 ~~~~-~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~-~~~~~~lvGIVt~rDL~~~~~--------~~~~V~dvm~~--- 151 (450)
T TIGR01302 85 GIIS-DPVTISPETTVADVLELMERKGISGIPVVED-GDMTGKLVGIITKRDIRFVKD--------KGKPVSEVMTR--- 151 (450)
T ss_pred ceec-CceEeCCCCCHHHHHHHHHHcCCCEEEEEeC-CCCCCeEEEEEEHHHHhhhhc--------CCCCHHHhhCC---
Confidence 4554 7899999999999999999999999999997 5 79999999999975421 24579999972
Q ss_pred CCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373 365 TTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 365 ~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
.+++++++++++.++++.|.+++.+.+||+|+++ +++|+||+.||++.+..
T Consensus 152 --------~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G-~lvGiVT~~DIl~~~~~ 202 (450)
T TIGR01302 152 --------EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNG-ELVGLITMKDIVKRRKF 202 (450)
T ss_pred --------CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCC-cEEEEEEhHHhhhcccC
Confidence 2789999999999999999999999999999998 99999999999998743
No 73
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.39 E-value=1.1e-11 Score=101.62 Aligned_cols=110 Identities=25% Similarity=0.441 Sum_probs=94.7
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.+++++.++++.|.+.+.+.+||+++ ++++|+++..|+.+...... ....++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~----~~~~~~~~~~~~----------- 64 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGR----EATVLVGDVMTR----------- 64 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCc----ccccCHHHhccC-----------
Confidence 5788999999999999999999999999995 89999999999987654311 112367788864
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 421 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~ 421 (444)
++.++.+++++.++++.|.+++.+.+||+|+++ +++|+||..||+++
T Consensus 65 -~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~it~~di~~~ 111 (111)
T cd04612 65 -DPVTASPDETLRDALKRMAERDIGRLPVVDDSG-RLVGIVSRSDLLRA 111 (111)
T ss_pred -CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCC-CEEEEEEHHHhhhC
Confidence 789999999999999999999999999999877 99999999999863
No 74
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.39 E-value=8.3e-12 Score=103.90 Aligned_cols=113 Identities=27% Similarity=0.430 Sum_probs=95.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc-------ccccCcHHHHhcccCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS-------NFRQLTVRDFMNAVVPT 365 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~-------~~~~~~v~~~m~~~~~~ 365 (444)
++.++.+++++.++++.|.+.++..+||+|+ ++++|+++..|++.......... .....++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 75 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTR---- 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccC----
Confidence 5678999999999999999999999999994 89999999999988754211000 0123567888864
Q ss_pred CCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 366 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 366 ~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.+++..|.+.+.+++||+|++| +++|+||..||++
T Consensus 76 --------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvvt~~di~~ 121 (122)
T cd04585 76 --------DPITVSPDASVEEAAELMLERKISGLPVVDDQG-RLVGIITESDLFR 121 (122)
T ss_pred --------CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCC-cEEEEEEHHHhhh
Confidence 789999999999999999999999999999877 9999999999986
No 75
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.39 E-value=5.1e-12 Score=133.81 Aligned_cols=128 Identities=15% Similarity=0.258 Sum_probs=109.3
Q ss_pred cccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV 355 (444)
Q Consensus 276 ~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v 355 (444)
+...+++| +|++ ++.++++++++.++.+.|.+++.+.+||+|+ +++++|+++.+|+.+.+..... ....++
T Consensus 444 L~~~~V~d----im~~-~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~~~~~---~~~~~v 514 (574)
T PRK01862 444 LRTTQMRE----LIQP-AQTVVPPTASVADMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLLDKRD---TTDKTA 514 (574)
T ss_pred HhhCcHHH----HhcC-CCceeCCCCCHHHHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhhcccc---cccchH
Confidence 35568888 7886 7889999999999999999999999999998 8999999999999886532211 123578
Q ss_pred HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCC-CeEEEEEeHHHHHHHhHc
Q 013373 356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE-AEVVGVITLRDVISCFIF 424 (444)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~-~~lvGvIT~~DIl~~l~~ 424 (444)
.++|+. ++.++++++++.++++.|.+++.+++||+|+++ ++++|+||++|+++.+..
T Consensus 515 ~dim~~------------~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 515 ADYAHT------------PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred HHhccC------------CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 999974 788999999999999999999999999999863 289999999999998764
No 76
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=4.7e-12 Score=103.72 Aligned_cols=103 Identities=26% Similarity=0.376 Sum_probs=89.3
Q ss_pred ecCCCcHHHHHHHHHHcC-----CCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013373 297 IQSNELILEAFKRMKDNN-----IGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK 371 (444)
Q Consensus 297 v~~~~sl~ea~~~m~~~~-----~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~ 371 (444)
+.+++++.++++.|.+++ +..+||+|+ +++++|+++.+|+++. . ...++.+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~~l~~~----~-----~~~~v~~~~~~---------- 61 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE-EGRLLGVVSLRDLLLA----D-----PDTPVSDIMDT---------- 61 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECC-CCCEEEEEEHHHHhcC----C-----CcchHHHHhCC----------
Confidence 567899999999998877 468999987 7899999999999753 1 13578898874
Q ss_pred CCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013373 372 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF 422 (444)
Q Consensus 372 ~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l 422 (444)
++.++.+++++.++++.|..++.+.+||+|+++ +++|+||..|+++.+
T Consensus 62 --~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvit~~dll~~~ 109 (109)
T cd04606 62 --DVISVSADDDQEEVARLFEKYDLLALPVVDEEG-RLVGIITVDDVIDVI 109 (109)
T ss_pred --CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCC-cEEEEEEhHHhhhhC
Confidence 789999999999999999999999999999887 999999999999753
No 77
>PRK11573 hypothetical protein; Provisional
Probab=99.38 E-value=1e-11 Score=125.56 Aligned_cols=135 Identities=12% Similarity=0.207 Sum_probs=113.2
Q ss_pred cccCcccccccCCCCCC-CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCc
Q 013373 276 IASQPISDLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT 354 (444)
Q Consensus 276 ~~~~~v~~l~l~im~~~-~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~ 354 (444)
+.+.++++ +|+++ +++.++.++++.++++.+.+++++++||++++.++++|++..+|++..+.+... .....
T Consensus 184 l~~~~v~e----iMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~---~~~~~ 256 (413)
T PRK11573 184 LEKVTVDD----IMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE---FTKEN 256 (413)
T ss_pred cCCCChhh----cCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCc---CCHHH
Confidence 35778999 78763 789999999999999999999999999998745899999999999876432111 11122
Q ss_pred HHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccch
Q 013373 355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD 431 (444)
Q Consensus 355 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~ 431 (444)
+.++++ ++.+++++.++.++++.|.+++.|-..|+|+.| ..+|+||..||+..++++..+.|+
T Consensus 257 l~~~~r-------------~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG-~~~GiVTleDilEeivGei~de~d 319 (413)
T PRK11573 257 MLRAAD-------------EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYG-DIQGLVTVEDILEEIVGDFTTSMS 319 (413)
T ss_pred HHhhcc-------------CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCC-CeEEEeeHHHHHHHHhCCCCcccC
Confidence 344544 889999999999999999999999999999998 999999999999999998877665
No 78
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=7.2e-12 Score=104.94 Aligned_cols=118 Identities=21% Similarity=0.346 Sum_probs=96.9
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccc----ccccCcccccccCCCC
Q 013373 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD----IIASQPISDLGLPFMS 290 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~----~~~~~~v~~l~l~im~ 290 (444)
.++..+.+++++.++++.|.+++++++||++++ |+++|+++..|+.+.+.......... .....++.+ +|.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~ 76 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGD----IMS 76 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHH----hcc
Confidence 457889999999999999999999999999986 89999999999987664331100000 012346777 676
Q ss_pred CCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 291 ~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
. ++.++.+++++.++++.|.+++.+.+||+++ +|+++|++|.+|++.
T Consensus 77 ~-~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~ 123 (124)
T cd04600 77 P-PVVTVRPDTPIAELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIA 123 (124)
T ss_pred C-CCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhc
Confidence 5 7899999999999999999999999999998 799999999999874
No 79
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=1.3e-11 Score=100.10 Aligned_cols=103 Identities=30% Similarity=0.429 Sum_probs=91.4
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.+++++.++++.|.+++...+||+| +++++|+++..|+++.. ...++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~Giv~~~~l~~~~---------~~~~~~~~~~~----------- 59 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE--DGKLVGIITSRDVRRAH---------PNRLVADAMTR----------- 59 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEehHHhhccc---------ccCCHHHHccC-----------
Confidence 567889999999999999999999999998 58999999999997642 13468888874
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++++++++.++++.|.+++..++||+|+ + +++|+||..||+.
T Consensus 60 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~G~it~~~l~~ 104 (105)
T cd04599 60 -EVVTISPEASLLEAKRLMEEKKIERLPVLRE-R-KLVGIITKGTIAL 104 (105)
T ss_pred -CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-C-EEEEEEEHHHhcc
Confidence 7899999999999999999999999999998 6 9999999999973
No 80
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.38 E-value=6.5e-12 Score=102.69 Aligned_cols=106 Identities=26% Similarity=0.450 Sum_probs=91.8
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++..++++.++.+.|.+++...+||+|+ +|+++|+++..|+++... ...++.++|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~--------~~~~v~~~~~~----------- 62 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDD-DGKLVGIVTNRDLRFETD--------LDKPVSEVMTP----------- 62 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCEEEEEEEhhHeeeccc--------CCCCHHHhccc-----------
Confidence 5788899999999999999999999999997 799999999999864311 23578899874
Q ss_pred CCCeEecC-CCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKL-ESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~-~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
.+..+.+ ++++.++++.|.+.+.+.+||+|+++ +++|+||.+|+++
T Consensus 63 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvi~~~dil~ 109 (110)
T cd04601 63 -ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEG-KLKGLITVKDIEK 109 (110)
T ss_pred -CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCC-CEEEEEEhhhhhc
Confidence 5566666 99999999999999999999999887 9999999999986
No 81
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=1e-11 Score=102.38 Aligned_cols=108 Identities=22% Similarity=0.356 Sum_probs=93.9
Q ss_pred ceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceE
Q 013373 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 296 (444)
Q Consensus 217 ~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~ 296 (444)
.+++.+++++.++++.|.+++.+.+||+|++ ++++|+++..|+.+.+..... ...++.+ +|.. ++.+
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~-------~~~~v~~----~~~~-~~~~ 70 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLS-------LDDPVSE----VMNR-NPIT 70 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCC-------cCCCHHH----hhcC-CCEE
Confidence 5678999999999999999999999999987 899999999999876654321 2346777 6765 7889
Q ss_pred ecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHH
Q 013373 297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338 (444)
Q Consensus 297 v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll 338 (444)
+.+++++.++++.|.+++.+.+||+++ +++++|+||.+|++
T Consensus 71 v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~ 111 (113)
T cd04607 71 AKVGSSREEILALMRERSIRHLPILDE-EGRVVGLATLDDLL 111 (113)
T ss_pred EcCCCCHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHhc
Confidence 999999999999999999999999997 78999999999986
No 82
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=1.4e-11 Score=101.31 Aligned_cols=110 Identities=26% Similarity=0.453 Sum_probs=93.3
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH-HhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH-LLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK 371 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~-~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~ 371 (444)
++.++.+++++.++++.|.+++.+.+||+++ ++++|+++..|++. .+.. .. .....++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~-~~--~~~~~~~~~~~~~---------- 66 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAE-GR--DPDTTTVGDVMTR---------- 66 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhc-cC--CcccCCHHHhccC----------
Confidence 5788999999999999999999999999994 99999999999873 3322 11 1123358899874
Q ss_pred CCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 372 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 372 ~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
.+.++.+++++.++++.|.+.+.+++||+++++ +++|+||..|+++
T Consensus 67 --~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~it~~di~~ 112 (113)
T cd04622 67 --GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDG-RLVGIVSLGDLAR 112 (113)
T ss_pred --CccEECCCCCHHHHHHHHHHcCCCeeeEECCCC-cEEEEEEHHHhhc
Confidence 788999999999999999999999999999877 9999999999975
No 83
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=6.7e-12 Score=102.94 Aligned_cols=109 Identities=16% Similarity=0.348 Sum_probs=94.7
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
++.++.+++++.++++.|.+.+..++||+|.+ ++++|+++..++.+.+.... ...++.+ +|.. ++.
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~--------~~~~v~~----~~~~-~~~ 67 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGG--------PDAPVRG----VMRR-DFP 67 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcC--------CCCcHHH----HhcC-CCc
Confidence 46788999999999999988889999999986 89999999999988765431 2246777 6765 789
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.+++++.++++.|.+++...+||+++ +++++|++|.+|+..
T Consensus 68 ~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~ 110 (111)
T cd04639 68 TVSPSATLDAVLRLMQQGGAPAVPVVDG-SGRLVGLVTLENVGE 110 (111)
T ss_pred EECCCCcHHHHHHHHHhcCCceeeEEcC-CCCEEEEEEHHHhhc
Confidence 9999999999999999999999999987 689999999999864
No 84
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.37 E-value=5.6e-12 Score=118.93 Aligned_cols=135 Identities=19% Similarity=0.379 Sum_probs=115.2
Q ss_pred CcccccccCCCCC-CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013373 279 QPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD 357 (444)
Q Consensus 279 ~~v~~l~l~im~~-~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~ 357 (444)
..|.+ +|.+ .....+.+++++.+..++..+.+.+++||+|. ..+++|++|.+|+.... ...++..
T Consensus 188 ~~Ved----i~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~-~~kvvGvVt~rDv~~~~---------~~t~ieK 253 (432)
T COG4109 188 ITVED----IMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR-SMKVVGVVTMRDVLDKK---------PSTTIEK 253 (432)
T ss_pred eeHHH----hccccccceeccccccHHHHHHHHHHcCCCccceecc-cceEEEEEEehhhhcCC---------CCccHHH
Confidence 46677 6663 25678899999999999999999999999998 89999999999997662 3568999
Q ss_pred HhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhH---cCC--Cccchh
Q 013373 358 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI---FEP--PNHLDN 432 (444)
Q Consensus 358 ~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~---~e~--~~~~~~ 432 (444)
+|++ +|+++.+.+++..+.++|...++.-+||+|++. +++|+||++|+++.+- .+| +.-|++
T Consensus 254 VMtk------------np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~-~llGiitR~dvlk~lq~~q~qpqvget~~d 320 (432)
T COG4109 254 VMTK------------NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNN-TLLGIITRQDVLKSLQMIQRQPQVGETISD 320 (432)
T ss_pred Hhcc------------CCeeecccchHHHHHHHHHhccceeeeEEcCCc-eEEEEEEHHHHHHHHHHhccCCcccccHHH
Confidence 9995 899999999999999999999999999999998 9999999999999885 345 445666
Q ss_pred hhhhhHHH
Q 013373 433 YFGFSVKD 440 (444)
Q Consensus 433 ~~~~~~~~ 440 (444)
.....+.|
T Consensus 321 ~I~~~l~e 328 (432)
T COG4109 321 QIANNLSE 328 (432)
T ss_pred HHHhhhhh
Confidence 55555544
No 85
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1.4e-11 Score=101.77 Aligned_cols=112 Identities=16% Similarity=0.225 Sum_probs=94.3
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
++..+.+++++.++++.|.+++.+.+||+|++.++++|+++..|+.+.+..... .....++.+ +|.. ++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~-----~~~~~~v~~----~~~~-~~~ 71 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR-----DPDRVNVYE----IMTK-PLI 71 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC-----CCCccCHHH----HhcC-CCe
Confidence 478899999999999999999999999998632699999999999886644210 012356778 6765 789
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.+++++.++++.|.+++...+||+++ ++++|+|+..|+++
T Consensus 72 ~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 72 SVSPDMDIKYCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred eECCCCCHHHHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 9999999999999999999999999984 89999999999874
No 86
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.37 E-value=1.4e-11 Score=101.96 Aligned_cols=111 Identities=14% Similarity=0.270 Sum_probs=94.5
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
++..+.+++++.++++.|.+.+.+.+||+|.+ ++++|+++..|+.+.+..... ....++.+ +|.. ++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~------~~~~~~~~----~~~~-~~~ 69 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEA------GEPSAVDE----VATP-PLL 69 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccc------cccccHHH----hccC-Cce
Confidence 46688999999999999999999999999987 899999999999887653311 02334667 6765 789
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCC--CeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQ--KKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~--~~lvGiIt~~Dll~ 339 (444)
++.+++++.+++++|.+++...+||+|+ + |+++|+||.+|+++
T Consensus 70 ~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 70 TVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLL 114 (115)
T ss_pred EECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhc
Confidence 9999999999999999999999999987 5 79999999999875
No 87
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.37 E-value=1.6e-11 Score=100.27 Aligned_cols=109 Identities=23% Similarity=0.434 Sum_probs=91.7
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++.+++++.++.+.|.+++++.+||+++ ++++|+++..|+.+.+..... ....++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~---~~~~~~~~~~~~----------- 65 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKA---KFSLPVREVMGE----------- 65 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhcccc---ccCcCHHHHhcC-----------
Confidence 5778999999999999999999999999994 899999999999987653211 113578899874
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 421 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~ 421 (444)
++.++++++++.+++++|.+ . +.+||+++++ +++|+||++||++|
T Consensus 66 -~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~-~~~Gvvt~~di~~~ 110 (110)
T cd04609 66 -PLPTVDPDAPIEELSELLDR-G-NVAVVVDEGG-KFVGIITRADLLKY 110 (110)
T ss_pred -CCceeCCCCcHHHHHHHHHh-C-CceeEEecCC-eEEEEEeHHHhhcC
Confidence 78899999999999999988 3 3578998887 99999999999874
No 88
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.37 E-value=1e-11 Score=126.95 Aligned_cols=177 Identities=16% Similarity=0.204 Sum_probs=130.5
Q ss_pred CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCc
Q 013373 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP 280 (444)
Q Consensus 201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~ 280 (444)
+..++.++|. .+++++.+++++.+++++|.+++++.+||+|++ ++++|+||..|+... . ...+
T Consensus 87 ~~VKv~~iMi----~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~-------~-----~~~~ 149 (479)
T PRK07807 87 AWVKSRDLVF----DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGV-------D-----RFTQ 149 (479)
T ss_pred hhcccccccc----cCCeEECCCCCHHHHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcC-------c-----cCCC
Confidence 3455677777 679999999999999999999999999999976 899999999998421 0 2256
Q ss_pred ccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhc
Q 013373 281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 360 (444)
Q Consensus 281 v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~ 360 (444)
+.+ +|+. ++.++.+++++.+++++|.+++++.+||+|+ +++++|+||.+||++....+.....-....+..+
T Consensus 150 V~d----iMt~-~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~-~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aa-- 221 (479)
T PRK07807 150 VRD----VMST-DLVTLPAGTDPREAFDLLEAARVKLAPVVDA-DGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAA-- 221 (479)
T ss_pred HHH----hccC-CceEECCCCcHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhCCchhhhhhccchHhh--
Confidence 888 7886 8999999999999999999999999999998 7899999999999998664321110011112222
Q ss_pred ccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhH
Q 013373 361 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI 423 (444)
Q Consensus 361 ~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~ 423 (444)
+.......+.++.|.+.+++. .++|-..++ -....+.++.+-
T Consensus 222 -----------------v~~~~~~~~~a~~Lv~aGvd~-i~~D~a~~~---~~~~~~~i~~ik 263 (479)
T PRK07807 222 -----------------VGINGDVAAKARALLEAGVDV-LVVDTAHGH---QEKMLEALRAVR 263 (479)
T ss_pred -----------------hccChhHHHHHHHHHHhCCCE-EEEeccCCc---cHHHHHHHHHHH
Confidence 222234667888888888876 466643323 333444444444
No 89
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1.8e-11 Score=100.54 Aligned_cols=111 Identities=23% Similarity=0.422 Sum_probs=94.6
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
++..+.++.++.++++.|.+++++++||+|++ ++++|+++..|+++.+...... ....++.+ +|.. ++.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~-----~~~~~~~~----~~~~-~~~ 70 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGAS-----ALDTPVSE----IMTR-NVI 70 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCC-----ccccCHHH----hcCC-CcE
Confidence 46788999999999999999999999999987 7999999999999876543110 02346777 6765 789
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.+++++.++++.|.+.+.+.+||+++ ++++|+||.+|+++
T Consensus 71 ~v~~~~~~~~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 71 TVTPDDTVDEAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred EECCCCcHHHHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 9999999999999999999999999984 89999999999865
No 90
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1.6e-11 Score=100.93 Aligned_cols=110 Identities=26% Similarity=0.449 Sum_probs=95.2
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
++..+.+++++.++++.|.+++.+++||+|++ ++++|+++..|+++.+..... ...++.+ +|.. ++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~-------~~~~v~~----~~~~-~~~ 68 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGID-------LDTPVSE----IMTR-DLV 68 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCC-------CccCHHH----hccC-CCE
Confidence 46788999999999999999999999999987 899999999999887654321 2346777 6765 789
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.+++++.++++.|.+++...+||+++ +|+++|++|..|+++
T Consensus 69 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~g~~~Gilt~~dl~~ 111 (112)
T cd04624 69 TVDPDEPVAEAAKLMRKNNIRHHLVVDK-GGELVGVISIRDLVR 111 (112)
T ss_pred EECCCCcHHHHHHHHHHcCccEEEEEcC-CCcEEEEEEHHHhcc
Confidence 9999999999999999999999999997 799999999999863
No 91
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.36 E-value=3.3e-12 Score=107.64 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=95.2
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~ 294 (444)
.+++++.++.++.++++.|.+++++.+||+|++ ++++|+++..|+++.+..... . ...++.+ +|.. ++
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~-~-----~~~~v~~----im~~-~~ 69 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKV-Q-----PSDPVSK----ALYK-QF 69 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhcc-C-----CCCcHHH----Hhhc-cc
Confidence 357889999999999999999999999999987 799999999999876654311 1 4568999 7886 89
Q ss_pred eEecCCCcHHHHHHHHH---------HcCCCeEeEEeCCCCeEEEEEeHHHHHHH
Q 013373 295 ITIQSNELILEAFKRMK---------DNNIGGIPVVEGQQKKIVGNVSIRDIRHL 340 (444)
Q Consensus 295 ~~v~~~~sl~ea~~~m~---------~~~~~~lpVvd~~~~~lvGiIt~~Dll~~ 340 (444)
.++.+++++.++.+++. +.+.+.+||+++ +|+++|+||.+|++++
T Consensus 70 ~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 70 KRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-QEKPIGIVTKIDLLSY 123 (124)
T ss_pred eecCCCCCHHHHHhhcccCCceEEEecccccccccccc-ccceEEEEehhHhhhh
Confidence 99999999999998653 335778888887 7999999999999876
No 92
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.36 E-value=2.6e-11 Score=99.58 Aligned_cols=110 Identities=31% Similarity=0.515 Sum_probs=93.8
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++++++++.++++.|.+.+.+.+||+++ ++++|+++..|+++.+..... .....++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~--~~~~~~~~~~~~~----------- 66 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNL--KPREVPVGEVMST----------- 66 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccC--CcccCCHHHhcCC-----------
Confidence 5678899999999999999999999999995 499999999999986542211 1124578899874
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+++.+.+||+|+ + +++|+||..||++
T Consensus 67 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~di~~ 111 (112)
T cd04802 67 -PLITIDPNASLNEAAKLMAKHGIKRLPVVDD-D-ELVGIVTTTDIVM 111 (112)
T ss_pred -CcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-C-EEEEEEEhhhhhc
Confidence 7889999999999999999999999999986 4 9999999999975
No 93
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=1.7e-11 Score=100.41 Aligned_cols=108 Identities=21% Similarity=0.442 Sum_probs=94.2
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~ 294 (444)
++++.+.+++++.++++.|.+++...+||+|++ |++.|+++..++++.+... ..++.+ +|.. ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~----------~~~~~~----~~~~-~~ 65 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARD----------KKSVED----IMTR-NV 65 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhC----------ccCHHH----hcCC-CC
Confidence 467889999999999999999999999999987 8999999999998766432 124667 5665 78
Q ss_pred eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
.++.+++++.++++.|.+++.+.+||+++ +|+++|+++..|+++
T Consensus 66 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~v~~~di~~ 109 (110)
T cd04605 66 ITATPDEPIDVAARKMERHNISALPVVDA-ENRVIGIITSEDISK 109 (110)
T ss_pred eEECCCCcHHHHHHHHHHhCCCEEeEECC-CCcEEEEEEHHHhhh
Confidence 89999999999999999999999999997 799999999999864
No 94
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1e-11 Score=102.66 Aligned_cols=114 Identities=20% Similarity=0.334 Sum_probs=93.5
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
+++++.+++++.++++.|.+++++.+||+|++ ++++|+++..|+.+++....... ...+...++.+ +|.+ ++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~-~~~~~~~~v~~----~~~~-~~~ 74 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLD-LERLVDLKVID----VMNT-DVP 74 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchh-HHHHhCCcHHH----HhcC-CCc
Confidence 47889999999999999999999999999976 79999999999998775432111 00112457777 6775 789
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.+++++.++++.|.+.+ .+||+++ +++++|++|.+|+++
T Consensus 75 ~v~~~~~l~~a~~~~~~~~--~~~Vv~~-~~~~~Gvit~~dil~ 115 (116)
T cd04643 75 VIIDDADIEEILHLLIDQP--FLPVVDD-DGIFIGIITRREILK 115 (116)
T ss_pred eecCCCCHHHHHHHHhcCC--ceeEEeC-CCeEEEEEEHHHhhc
Confidence 9999999999999998765 5899997 799999999999875
No 95
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1.3e-11 Score=103.14 Aligned_cols=114 Identities=20% Similarity=0.288 Sum_probs=94.8
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCc---c--ccc--cccCcHHHHhcccCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE---L--FSN--FRQLTVRDFMNAVVPT 365 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~---~--~~~--~~~~~v~~~m~~~~~~ 365 (444)
++.++.+++++.++++.|.+++++++||+|+ |+++|+++..|+.+.+.... . ... ....++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 75 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTR---- 75 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcC----
Confidence 5778999999999999999999999999994 89999999999987653210 0 000 012367788864
Q ss_pred CCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373 366 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 421 (444)
Q Consensus 366 ~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~ 421 (444)
++.++.+++++.++++.|.+++...+||+|+++ +++|++|+.|++++
T Consensus 76 --------~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~-~~~Gvit~~dll~~ 122 (122)
T cd04637 76 --------DPITVSPDTPVDEASKLLLENSISCLPVVDENG-QLIGIITWKDLLKY 122 (122)
T ss_pred --------CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCC-CEEEEEEHHHhhhC
Confidence 789999999999999999999999999999887 99999999999874
No 96
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.36 E-value=1.4e-11 Score=127.44 Aligned_cols=115 Identities=24% Similarity=0.373 Sum_probs=102.1
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013373 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP 367 (444)
Q Consensus 288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~ 367 (444)
+|.. ++.++.+++++.++++.|.+++++.+||+|+ +++++|+|+.+|+..... ...++.++|..
T Consensus 92 im~~-~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~DL~~~~~--------~~~~V~dim~~------ 155 (486)
T PRK05567 92 GVVT-DPVTVTPDTTLAEALALMARYGISGVPVVDE-NGKLVGIITNRDVRFETD--------LSQPVSEVMTK------ 155 (486)
T ss_pred cccC-CCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc-CCEEEEEEEHHHhhhccc--------CCCcHHHHcCC------
Confidence 5665 8999999999999999999999999999998 899999999999965321 23579999972
Q ss_pred CCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373 368 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 368 ~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
.+++++.+++++.++++.|.+++++.+||+|+++ +++|+||.+||++.+..
T Consensus 156 -----~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g-~lvGiIT~~DLl~~~~~ 206 (486)
T PRK05567 156 -----ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNG-RLKGLITVKDIEKAEEF 206 (486)
T ss_pred -----CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEEhHHhhhhhhC
Confidence 2889999999999999999999999999999998 99999999999998753
No 97
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.36 E-value=1e-11 Score=128.40 Aligned_cols=176 Identities=20% Similarity=0.327 Sum_probs=132.0
Q ss_pred HHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccccc
Q 013373 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDL 284 (444)
Q Consensus 205 v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l 284 (444)
++++|. .+++++.+++++.+++++|.+++++++||+|++ ++++|++|.+|+.... . ...++.+
T Consensus 89 ~~dim~----~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~DL~~~~--~---------~~~~V~d- 151 (486)
T PRK05567 89 SESGVV----TDPVTVTPDTTLAEALALMARYGISGVPVVDEN-GKLVGIITNRDVRFET--D---------LSQPVSE- 151 (486)
T ss_pred hhhccc----CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC-CEEEEEEEHHHhhhcc--c---------CCCcHHH-
Confidence 566666 679999999999999999999999999999976 8999999999995421 1 2357888
Q ss_pred ccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccc-cccCcHHHHhcccC
Q 013373 285 GLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSN-FRQLTVRDFMNAVV 363 (444)
Q Consensus 285 ~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~-~~~~~v~~~m~~~~ 363 (444)
+|...+++++.+++++.++++.|.+++++.+||+|+ +++++|+||.+|+++.+..+..... ...+.|...|.
T Consensus 152 ---im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe-~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~--- 224 (486)
T PRK05567 152 ---VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD-NGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVG--- 224 (486)
T ss_pred ---HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecc---
Confidence 677337899999999999999999999999999998 8999999999999987643221000 01112222222
Q ss_pred CCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373 364 PTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 421 (444)
Q Consensus 364 ~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~ 421 (444)
.++ .-.+.++.|.+.+++.+ ++|...++..++++..+.++.
T Consensus 225 --------------~~~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 225 --------------VGA--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred --------------cCc--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence 223 22788888899999854 676532377777766666554
No 98
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=9e-12 Score=102.87 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=92.1
Q ss_pred CceEeeCCCCHHHHHHHHHhCC-CCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCC-CC
Q 013373 216 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS-DE 293 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~-i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~-~~ 293 (444)
++.++.+++++.+|++.|.+++ .+.+||+|.+ ++++|+++..|+++...... ...++.+ +|.. .+
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~--------~~~~v~~----~~~~~~~ 68 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQW--------AQTTVIQ----VMTPAAK 68 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhc--------cccchhh----hhccccc
Confidence 4778999999999999997775 8899999976 89999999999988664221 2346777 5653 13
Q ss_pred ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 294 ~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
+.++.+++++.++++.|.+++.+.+||+++ +++++|+++.+|+++
T Consensus 69 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~ 113 (114)
T cd04801 69 LVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR 113 (114)
T ss_pred ceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence 678999999999999999999999999997 789999999999864
No 99
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.35 E-value=1.9e-11 Score=101.00 Aligned_cols=107 Identities=20% Similarity=0.305 Sum_probs=90.9
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSG 370 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~--~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~ 370 (444)
++.++.+++++.++++.|.+++...+||+|+. +++++|+++..|++.... ...++.++|..
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~--------~~~~v~~~~~~--------- 65 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD--------SETPLSEVMTP--------- 65 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc--------cCCCHHHhcCC---------
Confidence 46788999999999999998999999999851 489999999999875421 12468899974
Q ss_pred CCCCCeEecC--CCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 371 KVNPPITCKL--ESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 371 ~~~~~~~v~~--~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
.+.++.. ++++.++++.|.+++.+.+||+|+++ +++|+||++||++
T Consensus 66 ---~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~-~~~Gvit~~di~~ 113 (114)
T cd04602 66 ---REVLVVAPTGITLEEANEILRESKKGKLPIVNDDG-ELVALVTRSDLKK 113 (114)
T ss_pred ---CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCC-eEEEEEEHHHhhc
Confidence 5666755 99999999999999999999999887 9999999999975
No 100
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.35 E-value=2.3e-11 Score=101.33 Aligned_cols=113 Identities=27% Similarity=0.405 Sum_probs=95.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCc--cc----cccccCcHHHHhcccCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE--LF----SNFRQLTVRDFMNAVVPTT 366 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~--~~----~~~~~~~v~~~m~~~~~~~ 366 (444)
++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+++..|+.+...... .. ......++.++|..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----- 75 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDE-EGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTK----- 75 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECC-CCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhC-----
Confidence 5778899999999999999999999999998 799999999999987643110 00 01234578899874
Q ss_pred CCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 367 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 367 ~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+++.+.+||+++ + +++|++|..||++
T Consensus 76 -------~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~-~~~Gvv~~~di~~ 120 (121)
T cd04584 76 -------DVITVHPLDTVEEAALLMREHRIGCLPVVED-G-RLVGIITETDLLR 120 (121)
T ss_pred -------CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-C-EEEEEEEHHHhhc
Confidence 7899999999999999999999999999987 6 9999999999986
No 101
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.34 E-value=1.4e-11 Score=126.28 Aligned_cols=124 Identities=19% Similarity=0.266 Sum_probs=107.5
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHH-----cCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccc
Q 013373 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKD-----NNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~-----~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~ 351 (444)
...++++ +|++ ++.+++++.++.++++.|.+ ++...++|+|+ +++++|+++.+|++.. . .
T Consensus 129 ~e~tvg~----iMt~-~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~a--~-------~ 193 (449)
T TIGR00400 129 SDDSAGR----IMTI-EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE-SKHLKGVLSIRDLILA--K-------P 193 (449)
T ss_pred CcchHHH----hCcC-ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC-CCeEEEEEEHHHHhcC--C-------C
Confidence 5678889 7986 89999999999999999986 45678899987 7999999999999753 1 2
Q ss_pred cCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCc
Q 013373 352 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPN 428 (444)
Q Consensus 352 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~ 428 (444)
+.++.++|++ ++.++++++++.++++.|.+++...+||||++| +++|+||.+|+++.+..+...
T Consensus 194 ~~~v~~im~~------------~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g-~lvGiIt~~Dil~~l~~~~~e 257 (449)
T TIGR00400 194 EEILSSIMRS------------SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEG-RLVGIVTVDDIIDVIQSEATE 257 (449)
T ss_pred CCcHHHHhCC------------CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCC-eEEEEEEHHHHHHHHHhhhHH
Confidence 3479999984 788999999999999999999999999999988 999999999999999865443
No 102
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=2.5e-11 Score=98.75 Aligned_cols=104 Identities=28% Similarity=0.433 Sum_probs=92.0
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++..+.++.++++.|.+++...+||++ +++++|+++..|++.. . ...++.++|..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~~g~v~~~~l~~~--~-------~~~~~~~~~~~----------- 60 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVD--NGKVVGIVSARDLLGK--D-------PDETVEEIMSK----------- 60 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeE--CCEEEEEEEHHHhhcc--C-------ccccHHHhCCC-----------
Confidence 578899999999999999988888999998 4899999999999753 1 13468899874
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
.+.++.+++++.++++.|.+++.+++||+|++| +++|+|+..||++
T Consensus 61 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g-~~~Gvi~~~di~~ 106 (107)
T cd04610 61 -DLVVAVPEMDIMDAARVMFRTGISKLPVVDENN-NLVGIITNTDVIR 106 (107)
T ss_pred -CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCC-eEEEEEEHHHhhc
Confidence 788999999999999999999999999999887 9999999999986
No 103
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=2e-11 Score=101.86 Aligned_cols=117 Identities=22% Similarity=0.431 Sum_probs=96.4
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc---ccccccCcccccccCCCCCC
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW---FDIIASQPISDLGLPFMSSD 292 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~---~~~~~~~~v~~l~l~im~~~ 292 (444)
++.++.+++++.++++.|.+.+++++||++++ ++++|+++..++.+.+........ .......++.+ +|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~- 75 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE----VMKT- 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHH----hhCC-
Confidence 47789999999999999999999999999986 899999999999887654321100 00113456777 6765
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.++.+++++.++++.|.+.+.+.+||+++ +++++|++|..|++.
T Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dl~~ 121 (122)
T cd04803 76 DVLTVTPDTPLREAAEIMVENKIGCLPVVDD-KGTLVGIITRSDFLR 121 (122)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-CCCEEEEEEHHHhhc
Confidence 7899999999999999999999999999997 689999999999875
No 104
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.34 E-value=1.9e-11 Score=125.99 Aligned_cols=116 Identities=17% Similarity=0.180 Sum_probs=101.0
Q ss_pred CCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCC
Q 013373 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTT 366 (444)
Q Consensus 289 m~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~--~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~ 366 (444)
|.+ +++++++++++.++++.|.+++++.+||+|+. +++++|+||.+|+.... ....+|.++|++.
T Consensus 106 mi~-dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~--------~~~~~V~eIMt~~---- 172 (505)
T PLN02274 106 FVS-DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN--------DRETKLSEVMTSD---- 172 (505)
T ss_pred ccC-CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc--------ccCCcHHHHhccC----
Confidence 444 79999999999999999999999999999862 27999999999996542 1256899999840
Q ss_pred CCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373 367 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 367 ~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
.+++++.+++++.+++++|.+++.+.+||||+++ +++|+||++||++.+..
T Consensus 173 ------~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g-~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 173 ------DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDG-ELVDLVTRTDVKRVKGY 223 (505)
T ss_pred ------CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHHHhhC
Confidence 1378999999999999999999999999999887 99999999999998875
No 105
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.34 E-value=2.2e-11 Score=117.50 Aligned_cols=170 Identities=11% Similarity=0.194 Sum_probs=126.8
Q ss_pred hhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcc
Q 013373 194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF 273 (444)
Q Consensus 194 l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~ 273 (444)
+.+.-.+...+|+++|... .+++++++++++.++++.+.+++.+++||++.+.++++|+++.+|++..+....
T Consensus 58 i~~vl~l~~~~V~diMtpr--~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~----- 130 (292)
T PRK15094 58 LEGVMDIADQRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA----- 130 (292)
T ss_pred HHHHhccCCCEEeEEccch--HHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccC-----
Confidence 3334457788999999832 469999999999999999999999999999875468999999999987553211
Q ss_pred cccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccC
Q 013373 274 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL 353 (444)
Q Consensus 274 ~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~ 353 (444)
....+.+ +|. +++++.+++++.++++.|.+++.+.+||+|+ .|.++|+||..|++..+.. +........
T Consensus 131 ---~~~~l~~----l~r--~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~ivG-ei~de~d~~ 199 (292)
T PRK15094 131 ---EAFSMDK----VLR--QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVG-EIEDEYDEE 199 (292)
T ss_pred ---CcCCHHH----HcC--CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHhC-CCccccccc
Confidence 1124667 565 4568999999999999999999999999997 7889999999999998763 221111100
Q ss_pred cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHH
Q 013373 354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSL 391 (444)
Q Consensus 354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m 391 (444)
.-.++.. ....-+.++...++.+..+.+
T Consensus 200 ~~~~i~~----------~~~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 200 DDIDFRQ----------LSRHTWTVRALASIEDFNEAF 227 (292)
T ss_pred cccccEE----------eCCCeEEEEeccCHHHHHHHh
Confidence 0001111 012457788888888888776
No 106
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.9e-11 Score=102.95 Aligned_cols=120 Identities=18% Similarity=0.293 Sum_probs=92.0
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccccc----ccCcccccccCCCCC
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII----ASQPISDLGLPFMSS 291 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~----~~~~v~~l~l~im~~ 291 (444)
.++++++++++.+|++.|.++++..+||+|++ ++++|+++..|+.+.............. ....+.... ..|..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSD-GVKSR 79 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhccccc-ccccC
Confidence 37889999999999999999999999999987 8999999999998876432110000000 000011100 03444
Q ss_pred CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 292 ~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.++.+++++.++++.|.+++.+.+||+|+ +++++|+||..|+++
T Consensus 80 -~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dil~ 125 (126)
T cd04642 80 -PLITCTPSSTLKEVITKLVANKVHRVWVVDE-EGKPIGVITLTDIIS 125 (126)
T ss_pred -CCeEECCCCcHHHHHHHHHHhCCcEEEEECC-CCCEEEEEEHHHHhc
Confidence 7899999999999999999999999999997 799999999999875
No 107
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.6e-11 Score=102.90 Aligned_cols=118 Identities=25% Similarity=0.442 Sum_probs=96.1
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc-----ccccccCcccccccCCCC
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-----FDIIASQPISDLGLPFMS 290 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~-----~~~~~~~~v~~l~l~im~ 290 (444)
++..+.++.++.++++.|.+.+...+||+|++++++.|+++..|+..++........ .......++.+ +|.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 77 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRS----IMT 77 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHH----Hhc
Confidence 477889999999999999999999999998754799999999999987754311100 00112346777 566
Q ss_pred CCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 291 ~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
. ++.++.+++++.++++.|.+++.+.+||+++ +++++|+||..|+++
T Consensus 78 ~-~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~~Gvit~~di~~ 124 (125)
T cd04631 78 R-NVITITPDDSIKDAAELMLEKRVGGLPVVDD-DGKLVGIVTERDLLK 124 (125)
T ss_pred C-CceEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCcEEEEEEHHHhhc
Confidence 5 7999999999999999999999999999997 689999999999975
No 108
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=3.2e-11 Score=103.22 Aligned_cols=116 Identities=25% Similarity=0.327 Sum_probs=95.1
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCC-----------------ccccccc
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD-----------------WFDIIAS 278 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~-----------------~~~~~~~ 278 (444)
++.++.+++++.+|++.|.+++...+||+|++ ++++|+++..|+++.+....... .......
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP 80 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccc
Confidence 36788999999999999999999999999986 89999999999998764321110 0000124
Q ss_pred CcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 279 ~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
.++.+ +|.. ++.++.+++++.++++.|.+++.+.+||++ +++++|+||.+|+++
T Consensus 81 ~~v~~----~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~--~~~~~Gvit~~di~~ 134 (135)
T cd04621 81 LVAED----IMTE-EIITVSPNDDVVDAAKLMLEANISGLPVVD--NDNIVGVITKTDICR 134 (135)
T ss_pred ccHHH----hcCC-CCeEECCCCCHHHHHHHHHHcCCCEEEEEe--CCEEEEEEEHHHHhh
Confidence 46788 6775 788999999999999999999999999998 489999999999875
No 109
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.33 E-value=3.6e-11 Score=97.67 Aligned_cols=100 Identities=23% Similarity=0.336 Sum_probs=87.8
Q ss_pred eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCC
Q 013373 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNP 374 (444)
Q Consensus 295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~ 374 (444)
.++.++.++.++++.|.+.+.+.+||+|+ ++++|+++..|+++.. ..++.++|.. .
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~----------~~~~~~~~~~------------~ 59 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENAT----------YGDVVDYIVR------------G 59 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhc----------ccchhhhhhc------------C
Confidence 56789999999999999999999999994 8999999999997641 1246777764 6
Q ss_pred CeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 375 PITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 375 ~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
+.++.+++++.++++.|.+++...+||+|+ + +++|+||..|+++
T Consensus 60 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~-~~iGvit~~dl~~ 103 (104)
T cd04594 60 IPYVRLTSTAEEAWEVMMKNKTRWCPVVDD-G-KFKGIVTLDSILD 103 (104)
T ss_pred CcEEcCCCCHHHHHHHHHHcCcceEEEEEC-C-EEEEEEEHHHhhc
Confidence 789999999999999999999999999984 5 9999999999975
No 110
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.33 E-value=2.6e-11 Score=122.57 Aligned_cols=169 Identities=10% Similarity=0.156 Sum_probs=130.0
Q ss_pred hhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcc
Q 013373 194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF 273 (444)
Q Consensus 194 l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~ 273 (444)
+.+.-.+...+++|+|... .++++++.++++.++++.+.+++++++||++++..+++|+++.+|++..+..
T Consensus 182 i~~vl~l~~~~v~diMtpr--~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~------- 252 (408)
T TIGR03520 182 LQGIVSFGNTDTKQVMRPR--LDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK------- 252 (408)
T ss_pred HHHHhccCCCEeeeeCCch--HhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-------
Confidence 3334457789999999943 5799999999999999999999999999998765689999999999875432
Q ss_pred cccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccC
Q 013373 274 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL 353 (444)
Q Consensus 274 ~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~ 353 (444)
...++.+ +|. ++.++++++++.++++.|.+++.+..+|+|+ .|.++|+||..|++..+.. +..... +
T Consensus 253 ---~~~~l~~----~~~--~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE-~G~~~GiVT~eDileeivg-ei~de~-d- 319 (408)
T TIGR03520 253 ---KNFDWQS----LLR--EPYFVPENKKLDDLLRDFQEKKNHLAIVVDE-YGGTSGLVTLEDIIEEIVG-DISDEF-D- 319 (408)
T ss_pred ---CCCCHHH----HcC--CCeEeCCCCcHHHHHHHHHhcCceEEEEEcC-CCCEEEEEEHHHHHHHHhC-CCCCcC-C-
Confidence 1234566 564 5789999999999999999999999999998 7999999999999998753 221111 1
Q ss_pred cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHh
Q 013373 354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLAS 393 (444)
Q Consensus 354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~ 393 (444)
.-.+.+.. ..+....++...++.++.+.|--
T Consensus 320 ~~~~~i~~---------~~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 320 DEDLIYSK---------IDDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred cCccceEE---------eCCCeEEEEeccCHHHHHHHhCC
Confidence 11111211 11255778889999999888743
No 111
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.33 E-value=3.7e-11 Score=98.00 Aligned_cols=106 Identities=13% Similarity=0.304 Sum_probs=92.7
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
++..+.++.++.+++..|.++++.++||+|++ ++++|+++..|+...... ..++.+ +|.. .+.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~-----------~~~v~~----~~~~-~~~ 65 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYKE-----------AKSLED----IMLE-DVF 65 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhhc-----------CCcHhH----hhcC-Cce
Confidence 47789999999999999999999999999986 899999999999875421 235677 6765 789
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.+++++.+++..|.+.+.+.+||+++ +|+++|++|.+|+++
T Consensus 66 ~v~~~~~~~~~~~~~~~~~~~~~~vv~~-~g~~~Gvit~~~l~~ 108 (109)
T cd04583 66 TVQPDASLRDVLGLVLKRGPKYVPVVDE-DGKLVGLITRSSLVD 108 (109)
T ss_pred EECCCCcHHHHHHHHHHcCCceeeEECC-CCeEEEEEehHHhhc
Confidence 9999999999999999999999999997 789999999999864
No 112
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=3.1e-11 Score=99.29 Aligned_cols=110 Identities=24% Similarity=0.297 Sum_probs=94.1
Q ss_pred ceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceE
Q 013373 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 296 (444)
Q Consensus 217 ~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~ 296 (444)
+..+.+++++.++++.|.+.+.+.+||+|++ ++++|+++..|+.+.+.... .+...++.+ +|.. ++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~------~~~~~~i~~----~~~~-~~~~ 70 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESE------ELKDAKVRE----VMNS-PVIT 70 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhh------hhcCCcHHH----hccC-CceE
Confidence 6788999999999999999999999999986 89999999999987543321 113456777 6765 7899
Q ss_pred ecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 297 v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
+.+++++.++++.|.+++...+||+++ +|+++|+++..|+++
T Consensus 71 v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 71 IDANDSIAKARWLMSNNNISRLPVLDD-KGKVGGIVTEDDILR 112 (113)
T ss_pred ECCCCcHHHHHHHHHHcCCCeeeEECC-CCeEEEEEEHHHhhc
Confidence 999999999999999999999999997 789999999999864
No 113
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.32 E-value=2.5e-11 Score=99.91 Aligned_cols=112 Identities=26% Similarity=0.400 Sum_probs=96.1
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~ 294 (444)
.++.++.+++++.++++.|.+.+.+.+||+|++ ++++|+++..++.+.+..... ....++.+ +|.. ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~------~~~~~v~~----~~~~-~~ 69 (114)
T cd04604 2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLD------ILTLPVAD----VMTR-NP 69 (114)
T ss_pred CcccccCCCCcHHHHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCc------cccCCHHH----hhcc-CC
Confidence 357788999999999999988889999999987 899999999999987764321 12346788 6776 78
Q ss_pred eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
.++.+++++.++++.|..++.+.+||+++ +++++|+++..|+++
T Consensus 70 ~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~ 113 (114)
T cd04604 70 KTIDPDALAAEALELMEENKITALPVVDD-NGRPVGVLHIHDLLR 113 (114)
T ss_pred eEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhc
Confidence 89999999999999999999999999997 799999999999974
No 114
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=4.3e-11 Score=103.41 Aligned_cols=112 Identities=30% Similarity=0.493 Sum_probs=94.0
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccc-----------------------
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSN----------------------- 349 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~----------------------- 349 (444)
+++++.+++++.++++.|.+++++.+||+|+ ++++|+++..|+++++........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET 79 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence 5788999999999999999999999999994 899999999999887653211000
Q ss_pred ------cccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 350 ------FRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 350 ------~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
....++.++|.. ++.++.+++++.+++..|.+.+.+++||+++ + +++|+||..|++.
T Consensus 80 ~~~~~~~~~~~v~~~~~~------------~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~-~~~Gvvt~~dl~~ 142 (143)
T cd04634 80 KRALTDAGKMKVRDIMTK------------KVITISPDASIEDAAELMVRHKIKRLPVVED-G-RLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHHhcCCHHHHcCC------------CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHhhc
Confidence 123467777763 7899999999999999999999999999998 6 9999999999975
No 115
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=2.4e-11 Score=97.49 Aligned_cols=94 Identities=19% Similarity=0.384 Sum_probs=84.3
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
+++.+.+++++.+|++.|.+++++.+||+|++ +++.|+++..|+.... .+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~----------------------------~~~ 52 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS----------------------------EVV 52 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC----------------------------CcE
Confidence 47789999999999999999999999999976 8999999999986411 267
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.+++++.++++.|.+++.+.+||+++ +++++|++|.+|+++
T Consensus 53 ~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~~~~Giit~~di~~ 95 (96)
T cd04614 53 TATKRTTVSECAQKMKRNRIEQIPIING-NDKLIGLLRDHDLLK 95 (96)
T ss_pred EecCCCCHHHHHHHHHHhCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 8899999999999999999999999997 689999999999874
No 116
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.32 E-value=3.8e-11 Score=97.60 Aligned_cols=104 Identities=18% Similarity=0.305 Sum_probs=90.3
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
++.++.++.++.+|++.|.+++.+.+||+|++ |+++|+++..|+.+... .++.+ +|.+ .+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~-------------~~~~~----~~~~-~~~ 62 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG-------------GCCGD----HAEP-FKV 62 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc-------------cchhh----hccc-CCE
Confidence 36788999999999999999999999999876 89999999999976421 23566 6765 678
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
.+.+++++.++++.|.+++...+||+++ +++++|+|+.+|++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 63 TVSVDDDLRIVLSRMFAHDMSWLPCVDE-DGRYVGEVTQRSIAD 105 (106)
T ss_pred EECCCCCHHHHHHHHHHCCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 8999999999999999999999999997 789999999999864
No 117
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=2.6e-11 Score=102.32 Aligned_cols=118 Identities=23% Similarity=0.368 Sum_probs=94.8
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc-------ccccccCcccccccCC
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-------FDIIASQPISDLGLPF 288 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~-------~~~~~~~~v~~l~l~i 288 (444)
++..+.+++++.+|+++|.+.+.+.+||+|++ ++++|++|..|+.+.+........ .......++.+ +
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 76 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD----A 76 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH----H
Confidence 46788999999999999999999999999987 899999999999876533210000 01123456777 6
Q ss_pred CCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeC-CCCeEEEEEeHHHHHH
Q 013373 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG-QQKKIVGNVSIRDIRH 339 (444)
Q Consensus 289 m~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~-~~~~lvGiIt~~Dll~ 339 (444)
|.. +++++.++.++.++++.|.+++...+||++. ++++++|+||.+|+++
T Consensus 77 ~~~-~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 77 MSS-PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred hcC-CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 775 7899999999999999999999999999852 2689999999999864
No 118
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=2.3e-11 Score=100.22 Aligned_cols=112 Identities=20% Similarity=0.334 Sum_probs=94.2
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
++.++.+++++.++++.|.+++.+.+||+|++ ++++|+++..++.+.+...... .....++.+ +|.. ++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~----~~~~~~v~~----~~~~-~~~ 71 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYH----CDGVATVRD----IMTT-EVL 71 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhc----cCCCccHHH----Hhcc-Cce
Confidence 46788999999999999998899999999987 7999999999998866532100 012456777 6775 788
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.+++++.++++.|.+++.+.+||+++ |+++|++|.+|+++
T Consensus 72 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 72 TVSPDDSIVDLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred EECCCCcHHHHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 9999999999999999999999999994 89999999999975
No 119
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=2.4e-11 Score=99.28 Aligned_cols=106 Identities=19% Similarity=0.230 Sum_probs=93.1
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~ 294 (444)
.++.++.+++++.+++..|.+++.+.+||+|.+ ++++|+++..++.... ...++.+ +|.. ++
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~------------~~~~v~~----~~~~-~~ 63 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD------------PDTTIEK----VMTK-NP 63 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc------------ccccHHH----HhcC-CC
Confidence 358899999999999999999999999999976 8999999999996421 2346778 6765 78
Q ss_pred eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
.++.+++++.++++.|.+++...+||+++ +|+++|+++..|+++
T Consensus 64 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~di~~ 107 (108)
T cd04596 64 ITVNPKTSVASVAHMMIWEGIEMLPVVDD-NKKLLGIISRQDVLK 107 (108)
T ss_pred eEECCCCCHHHHHHHHHHcCCCeeeEEcC-CCCEEEEEEHHHhhc
Confidence 99999999999999999999999999997 789999999999864
No 120
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=3.8e-11 Score=98.52 Aligned_cols=109 Identities=22% Similarity=0.359 Sum_probs=93.2
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
++..+.+++++.++++.|.+++.+++||+|++ +++.|+++..|+..+..... ....++.+ +|.. ++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~-------~~~~~v~~----~~~~-~~~ 68 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFES-------FLEKKVFN----IVSQ-DVF 68 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcc-------cccCcHHH----HhcC-CcE
Confidence 46789999999999999999999999999986 89999999999987654221 02346777 6765 788
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.+++++.++++.|.+++...+||+++ ++++|+||..|++.
T Consensus 69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 69 YVNEEDTIDEALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred EEcCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 9999999999999999999999999994 88999999999863
No 121
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=3.5e-11 Score=102.19 Aligned_cols=116 Identities=22% Similarity=0.418 Sum_probs=94.9
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc--------------ccccccCcc
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW--------------FDIIASQPI 281 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~--------------~~~~~~~~v 281 (444)
++.++.+++++.++++.|.+++.+++||+|++ ++++|+++..|+.+++........ ...+...++
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV 80 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence 47789999999999999999999999999987 899999999999987754321110 001112266
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
.+ +|.. ++..+.+++++.++++.|.+.+.+.+||+++ |+++|++|.+|+++
T Consensus 81 ~~----~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 81 EE----IMTK-KVITVDEDTTIEDVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred HH----hccC-CceEECCCCcHHHHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 67 5765 7899999999999999999999999999994 89999999999975
No 122
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.30 E-value=7.7e-11 Score=97.40 Aligned_cols=112 Identities=29% Similarity=0.547 Sum_probs=97.0
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013373 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP 367 (444)
Q Consensus 288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~ 367 (444)
.|.. ++.++.++.++.++...|.++++..+||++ .++++|++|.+|+++.+..... ...++.++|..
T Consensus 4 ~~~~-~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~--~~~l~Giit~~di~~~~~~~~~----~~~~v~~v~~~------ 70 (117)
T COG0517 4 IMTK-DVITVKPDTSVRDALLLMSENGVSAVPVVD--DGKLVGIITERDILRALAAGGK----RLLPVKEVMTK------ 70 (117)
T ss_pred cccC-CCEEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHhccCC----ccccHHHhccC------
Confidence 3444 789999999999999999999999999998 4589999999999999764221 11168999984
Q ss_pred CCCCCCCCeEecCCCCHHHHHHHHHh-cCCCEEEEEeCC-CCeEEEEEeHHHHH
Q 013373 368 DSGKVNPPITCKLESTLGSVIHSLAS-KSVHRIYVVAGE-EAEVVGVITLRDVI 419 (444)
Q Consensus 368 ~~~~~~~~~~v~~~~tl~~a~~~m~~-~~~~~l~VVd~~-~~~lvGvIT~~DIl 419 (444)
+++++.++.++.++++.|.+ ++++++||++++ + +++|++|.+|++
T Consensus 71 ------~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~-~lvGivt~~di~ 117 (117)
T COG0517 71 ------PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGG-KLVGIITLSDIL 117 (117)
T ss_pred ------CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCC-eEEEEEEHHHcC
Confidence 88999999999999999999 799999999986 4 999999999974
No 123
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.30 E-value=6.4e-11 Score=96.33 Aligned_cols=111 Identities=28% Similarity=0.488 Sum_probs=94.6
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++..++++.++.+.|..++.+.+||+++ +++++|+++.+|++..+..... .....+.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~~---~~~~~~~~~~~~----------- 66 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGL---DPLVTVGDVMTR----------- 66 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC-CCCEEEEEeHHHHHHHHHhccC---CccccHHHHhcC-----------
Confidence 5678899999999999999989999999997 7899999999999987653211 011126777764
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.++++.|.+.+.+.+||+|+++ +++|+++..|+++
T Consensus 67 -~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~i~~~dl~~ 112 (113)
T cd02205 67 -DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEG-RLVGIVTRSDILR 112 (113)
T ss_pred -CceecCCCcCHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEEHHHhhc
Confidence 788999999999999999999999999999987 9999999999986
No 124
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=4.8e-11 Score=99.15 Aligned_cols=113 Identities=17% Similarity=0.331 Sum_probs=92.0
Q ss_pred CceEecCCCcHHHHHHHHHHcC-CCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNN-IGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK 371 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~-~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~ 371 (444)
++.++.+++++.++++.|...+ ++.+||+|+ |+++|+++..|++.++............++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~---------- 69 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDP---------- 69 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCC----------
Confidence 5678899999999999998887 889999995 899999999999876542100001134578999974
Q ss_pred CCCCeEecCCCCHHHHHHHHHhcCCC---EEEEEeCCCCeEEEEEeHHHHHH
Q 013373 372 VNPPITCKLESTLGSVIHSLASKSVH---RIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 372 ~~~~~~v~~~~tl~~a~~~m~~~~~~---~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.+++..|.+++.. ..+||++++ +++|+||..|+++
T Consensus 70 --~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~-~~~Gvvs~~di~~ 118 (119)
T cd04598 70 --DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEG-RYLGIGTVKDLLR 118 (119)
T ss_pred --CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCC-eEEEEEEHHHHhc
Confidence 789999999999999999988764 446888887 9999999999986
No 125
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.30 E-value=4.4e-11 Score=123.23 Aligned_cols=116 Identities=14% Similarity=0.167 Sum_probs=99.9
Q ss_pred CCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCC
Q 013373 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPT 365 (444)
Q Consensus 288 im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~--~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~ 365 (444)
.|.. +++++++++++.+++++|.+++++.+||+|+. +++++|+++.+|+.... ....++.++|++.
T Consensus 101 g~i~-dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~--------~~~~~V~diMt~~--- 168 (495)
T PTZ00314 101 GFIM-DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK--------DKSTPVSEVMTPR--- 168 (495)
T ss_pred cccc-CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc--------cCCCCHHHhhCCc---
Confidence 3444 78999999999999999999999999999862 27999999999997431 1256899999731
Q ss_pred CCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhH
Q 013373 366 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI 423 (444)
Q Consensus 366 ~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~ 423 (444)
.+++++++++++.+++++|.+++.+.+||||+++ +++|+||++||++...
T Consensus 169 -------~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g-~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 169 -------EKLVVGNTPISLEEANEVLRESRKGKLPIVNDNG-ELVALVSRSDLKKNRG 218 (495)
T ss_pred -------CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCC-cEEEEEEehHhhhccc
Confidence 2689999999999999999999999999999988 9999999999998765
No 126
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.29 E-value=3.4e-11 Score=123.89 Aligned_cols=111 Identities=17% Similarity=0.214 Sum_probs=96.7
Q ss_pred ceEecCCCcHHHHHHHHHHcCCCeEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013373 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK 371 (444)
Q Consensus 294 ~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~--~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~ 371 (444)
..++++++++.++++.|.+++++.+||+|+. +++++|+||.+|+++... ..+.++.++|+..
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~-------~~~~~V~dIMt~~--------- 170 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRM-------SLDTKVKDFMTPF--------- 170 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcccc-------CCCCCHHHHhCCC---------
Confidence 4689999999999999999999999999952 479999999999964311 2356899999831
Q ss_pred CCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013373 372 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF 422 (444)
Q Consensus 372 ~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l 422 (444)
.+++++++++++.+|+++|.+++++++||||+++ +++|+||++||++..
T Consensus 171 -~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g-~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 171 -EKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNG-NLVYLVFRKDYDSHK 219 (502)
T ss_pred -CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEhHHHHhcc
Confidence 2678999999999999999999999999999887 999999999999965
No 127
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.29 E-value=6.7e-11 Score=96.78 Aligned_cols=108 Identities=19% Similarity=0.413 Sum_probs=93.3
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
+++++.+++++.++++.|.+++++++||+++ +++.|+++..|+++...... ...++.+ +|.. ++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~--------~~~~v~~----~~~~-~~~ 66 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGL--------ELAKVKD----VMTK-DVI 66 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccc--------cccCHHH----HhcC-Cce
Confidence 4778999999999999999999999999987 69999999999988654331 1256777 5665 789
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.+++++.++++.|.+.+...+||+++ +++++|+++..|+++
T Consensus 67 ~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~ 109 (110)
T cd04588 67 TIDEDEQLYDAIRLMNKHNVGRLIVTDD-EGRPVGIITRTDILR 109 (110)
T ss_pred EECCCCCHHHHHHHHHhcCCCEEEEECC-CCCEEEEEEhHHhhc
Confidence 9999999999999999999999999987 689999999999864
No 128
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.29 E-value=2.4e-11 Score=121.56 Aligned_cols=126 Identities=20% Similarity=0.314 Sum_probs=111.0
Q ss_pred CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCc
Q 013373 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP 280 (444)
Q Consensus 201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~ 280 (444)
-.+++.+++. .+.+++++.+++.+|...|.++|++.+.+++++ +...||+|.+|+...+...- .. ...+
T Consensus 147 ~~trv~~~~~----~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g-~~-----~~~~ 215 (610)
T COG2905 147 ILTRVGEVKT----LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADG-RS-----KTQK 215 (610)
T ss_pred HHHHHHHHhc----CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcC-CC-----cccc
Confidence 3456777777 789999999999999999999999999999987 89999999999988765421 11 4679
Q ss_pred ccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCC
Q 013373 281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344 (444)
Q Consensus 281 v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~ 344 (444)
|++ +|+. ++.++..++-+.+|+-.|..++++++||++ +|+++|++|.+||+.....+
T Consensus 216 V~e----vmT~-p~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l~s~~ 272 (610)
T COG2905 216 VSE----VMTS-PVISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRLFSQN 272 (610)
T ss_pred hhh----hhcc-CceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHhhCCC
Confidence 999 8997 999999999999999999999999999999 69999999999999998753
No 129
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.29 E-value=6e-11 Score=97.98 Aligned_cols=110 Identities=24% Similarity=0.385 Sum_probs=90.5
Q ss_pred CceEeeCCCCHHHHHHHHHhCC-CCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373 216 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~-i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~ 294 (444)
++..+.++.++.++++.|.+++ ...+||.|. ++++|+++..|+.+.+..... ....++.+ +|.. ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~------~~~~~i~~----~~~~-~~ 68 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKD------LSDLPIGE----VMTQ-PV 68 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCC------ccccCHHH----hcCC-Cc
Confidence 3667899999999999998888 667777774 799999999999887653211 12356777 6765 78
Q ss_pred eEecCC--CcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 295 ITIQSN--ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 295 ~~v~~~--~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
.++.++ +++.++++.|.+++...+||+|+ +|+++|++|.+|+++
T Consensus 69 ~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Gvit~~dl~~ 114 (115)
T cd04620 69 VTLQESEIQDIFTALSLFRQHQIRHLPVLDD-QGQLIGLVTAESIRQ 114 (115)
T ss_pred EEEecccccCHHHHHHHHHHhCCceEEEEcC-CCCEEEEEEhHHhhc
Confidence 888877 68999999999999999999997 799999999999975
No 130
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.28 E-value=3.6e-11 Score=127.41 Aligned_cols=127 Identities=12% Similarity=0.224 Sum_probs=107.6
Q ss_pred CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013373 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (444)
Q Consensus 200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~ 279 (444)
+...+++|+|. ++..++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|+.+.+..... ....
T Consensus 444 L~~~~V~dim~----~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~------~~~~ 512 (574)
T PRK01862 444 LRTTQMRELIQ----PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRD------TTDK 512 (574)
T ss_pred HhhCcHHHHhc----CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccc------cccc
Confidence 45578999998 568889999999999999999999999999987 899999999999886543211 1235
Q ss_pred cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHHHhc
Q 013373 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~~l~ 342 (444)
++.+ +|++ ++.++++++++.++++.|.+++.+.+||+|+++ ++++|+||++|+++.+.
T Consensus 513 ~v~d----im~~-~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 513 TAAD----YAHT-PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred hHHH----hccC-CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 6788 7876 789999999999999999999999999998722 58999999999998865
No 131
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.28 E-value=6.5e-11 Score=97.29 Aligned_cols=112 Identities=16% Similarity=0.284 Sum_probs=94.7
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
++.++.+++++.++++.|.++++..+||+|.+ ++++|+++..|+.+++..... ....++.+ +|.. ++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~------~~~~~v~~----~~~~-~~~ 69 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSL------YDLVVASD----IMTK-PPV 69 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccc------cccEEHHH----hccC-CCc
Confidence 46789999999999999999999999999987 799999999999887653311 01256777 6776 789
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.+++++.++++.|...+.+.+||+++..++++|+++.+|++.
T Consensus 70 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 70 VVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred EEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 99999999999999999999999999831378999999999864
No 132
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.28 E-value=9.6e-11 Score=95.86 Aligned_cols=109 Identities=18% Similarity=0.350 Sum_probs=94.0
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
++..+.+++++.++++.|.+++.+.+||+++ +++.|+++..|+.++..... . ...++.+ +|.. ++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~--~-----~~~~v~~----~~~~-~~~ 67 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGP--D-----LQTPVGE----VMSS-PLL 67 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCC--C-----CCcCHHH----hcCC-Cce
Confidence 3678899999999999999888999999986 79999999999998775431 0 2456777 6765 789
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.+++++.++++.|.+.+.+.+||+++ +|+++|+++.+|+++
T Consensus 68 ~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~ 110 (111)
T cd04611 68 TVPADTSLYDARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ 110 (111)
T ss_pred EECCCCCHHHHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence 9999999999999999999999999997 789999999999864
No 133
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.28 E-value=7.8e-11 Score=97.97 Aligned_cols=116 Identities=22% Similarity=0.364 Sum_probs=94.7
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccc----ccccCcccccccCCCCC
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD----IIASQPISDLGLPFMSS 291 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~----~~~~~~v~~l~l~im~~ 291 (444)
++.++.++.++.++++.|.+.++..+||+|+ ++++|+++..|+.+............ .....++.+ +|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 75 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD----IMTR 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH----hccC
Confidence 4678999999999999999999999999997 79999999999988764321100000 012345666 6765
Q ss_pred CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 292 ~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.++.+++++.+++..|.+++.+.+||+++ +|+++|++|..|+++
T Consensus 76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~ 121 (122)
T cd04585 76 -DPITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITESDLFR 121 (122)
T ss_pred -CCeEeCCCCcHHHHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhh
Confidence 7899999999999999999999999999997 799999999999975
No 134
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.28 E-value=8.4e-11 Score=96.38 Aligned_cols=108 Identities=14% Similarity=0.264 Sum_probs=91.9
Q ss_pred ceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceE
Q 013373 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 296 (444)
Q Consensus 217 ~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~ 296 (444)
++++.+++++.+|++.|.++++..+||++.+.++++|+++..++.+...... . ..++.+ +| . ++.+
T Consensus 3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~--~------~~~~~~----~~-~-~~~~ 68 (111)
T cd04590 3 IVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE--E------DLDLRD----LL-R-PPLF 68 (111)
T ss_pred eEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC--C------cCCHHH----Hh-c-CCee
Confidence 6789999999999999999999999999875368999999999998775431 1 134555 44 3 6789
Q ss_pred ecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 297 v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
+.+++++.++++.|.+++.+.+||+++ +++++|++|.+|++.
T Consensus 69 v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 110 (111)
T cd04590 69 VPESTPLDDLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDILE 110 (111)
T ss_pred cCCCCcHHHHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhhc
Confidence 999999999999999999999999997 799999999999863
No 135
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=1e-10 Score=96.03 Aligned_cols=110 Identities=16% Similarity=0.309 Sum_probs=91.3
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
.+.++.+++++.++++.|.+++...++|.++ ++++|+++..|+.+.+.... .. ....++.+ +|.. ++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~-~~----~~~~~v~~----~~~~-~~~ 69 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMER--GELVGLLTFREVLQAMAQHG-AG----VLDTTVRA----IMNP-EPI 69 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHHHHHHHhcC-Cc----hhcCCHHH----HhCC-CCe
Confidence 3678899999999999998888877777754 79999999999998765321 01 12356888 6765 788
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.+++++.++++.|.+++...+||++ +++++|++|.+|+++
T Consensus 70 ~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 70 VASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAK 111 (112)
T ss_pred EECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhc
Confidence 999999999999999999999999998 589999999999975
No 136
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=4.4e-11 Score=102.02 Aligned_cols=117 Identities=19% Similarity=0.373 Sum_probs=95.3
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCC---CCccc-------------cccc
Q 013373 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG---RDWFD-------------IIAS 278 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~---~~~~~-------------~~~~ 278 (444)
.++.++.+++++.++++.|.+++.+++||+|++ ++++|+++..|+.+.+..... ..+.. ....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 457889999999999999999999999999976 899999999999876543210 00000 1123
Q ss_pred CcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 279 ~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
.++.+ +|.. ++.++.+++++.++++.|.+++.+.+||+| +|+++|+||++|+++
T Consensus 81 ~~v~~----~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~ 134 (135)
T cd04586 81 RKVAD----VMTR-PVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLR 134 (135)
T ss_pred CCHHH----HhCC-CceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhc
Confidence 46777 6765 789999999999999999999999999999 689999999999864
No 137
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.27 E-value=4e-11 Score=114.94 Aligned_cols=113 Identities=26% Similarity=0.402 Sum_probs=98.4
Q ss_pred CcccccccCCCCCCC-ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013373 279 QPISDLGLPFMSSDE-VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD 357 (444)
Q Consensus 279 ~~v~~l~l~im~~~~-~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~ 357 (444)
.++.+ +|.+ + +.++.+++++.++++.|.+.+++.+||+|+ +++++|+++..|+++.+.... ....++.+
T Consensus 155 ~~v~~----im~~-~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~-~g~~~Givt~~dl~~~~~~~~----~~~~~v~~ 224 (268)
T TIGR00393 155 VKVKD----LMQT-TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE-NNQLVGVFTDGDLRRALLGGG----SLKSEVRD 224 (268)
T ss_pred hhHHH----HhCC-CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC-CCCEEEEEEcHHHHHHHhcCC----cccCcHHH
Confidence 46777 6876 6 889999999999999999999999999998 799999999999988754211 13567999
Q ss_pred HhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEe
Q 013373 358 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT 414 (444)
Q Consensus 358 ~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT 414 (444)
+|.. ++.++.+++++.++++.|.+++.+++||+|+++ +++|+|+
T Consensus 225 im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~l~GvI~ 268 (268)
T TIGR00393 225 FMTL------------GPKTFKLDALLLEALEFLERRKITSLVVVDDHN-KVLGVLH 268 (268)
T ss_pred hCCC------------CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCC-eEEEEEC
Confidence 9974 788999999999999999999999999999887 9999985
No 138
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=1.2e-10 Score=95.39 Aligned_cols=108 Identities=26% Similarity=0.469 Sum_probs=93.7
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~ 294 (444)
.++.++.++.++.++.+.|.+++..++||+|. ++++|+++..|+.+.+.... ...++.+ +|.. ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~--------~~~~~~~----~~~~-~~ 66 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGL--------GHAPVKD----YMST-DV 66 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhccc--------ccCcHHH----HhcC-CC
Confidence 46788999999999999999889999999997 79999999999987663221 3456778 6775 78
Q ss_pred eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
.++.+++++.++++.|.+++.+.+||++ +|+++|++|..|+++
T Consensus 67 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~ 109 (110)
T cd04595 67 VTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR 109 (110)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence 9999999999999999999999999998 689999999999864
No 139
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.27 E-value=8.3e-11 Score=95.95 Aligned_cols=101 Identities=20% Similarity=0.373 Sum_probs=87.4
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSG 370 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~--~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~ 370 (444)
....+.+++++.++.+.|.+.+...+||+++. +++++|+++.+|+.+.... +|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------------~m~~--------- 59 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------------YIDP--------- 59 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH--------------hccC---------
Confidence 46788999999999999999888899999862 3889999999999876431 5653
Q ss_pred CCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373 371 KVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 421 (444)
Q Consensus 371 ~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~ 421 (444)
++.++++++++.++++.|.+++.+.+||++ ++ +++|+||++||+++
T Consensus 60 ---~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~-~~~Gvvt~~dl~~~ 105 (105)
T cd04591 60 ---SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EG-RLVGIITRKDLLKA 105 (105)
T ss_pred ---CCceECCCCcHHHHHHHHHHcCCCEEEEEE-CC-eEEEEEEhhhhhcC
Confidence 788999999999999999999999999995 45 99999999999863
No 140
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=5e-11 Score=100.44 Aligned_cols=112 Identities=17% Similarity=0.212 Sum_probs=89.2
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHH-----hhcCCCCCcccccccCcccccccCCCC
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG-----LEGCKGRDWFDIIASQPISDLGLPFMS 290 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~-----l~~~~~~~~~~~~~~~~v~~l~l~im~ 290 (444)
+++++.+++++.++++.|.+++.+.+||+|++ ++++|+++..|+.+. +.... . .....++++ +|.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~-~----~~~~~~v~~----im~ 71 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGG-I----SRSELTVAD----VMT 71 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcC-C----CchheEHHH----hcC
Confidence 36789999999999999998999999999976 799999999999852 22110 0 013456777 676
Q ss_pred CCCceE--e----cCCCcHHHHHHHHHHcCCCeEeEEeCCC-CeEEEEEeHHHHHH
Q 013373 291 SDEVIT--I----QSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRH 339 (444)
Q Consensus 291 ~~~~~~--v----~~~~sl~ea~~~m~~~~~~~lpVvd~~~-~~lvGiIt~~Dll~ 339 (444)
. +... + .+++++.++++.|.+++.+.+||+|+ + |+++|+||.+|+++
T Consensus 72 ~-~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-~~~~~~G~it~~di~~ 125 (126)
T cd04640 72 P-KEDLKALDLEELENASVGDVVETLKASGRQHALVVDR-EHHQIRGIISTSDIAR 125 (126)
T ss_pred c-hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-CCCEEEEEEeHHHHhh
Confidence 4 4333 3 36889999999999999999999997 5 78999999999864
No 141
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.26 E-value=1.1e-10 Score=119.28 Aligned_cols=119 Identities=15% Similarity=0.206 Sum_probs=102.5
Q ss_pred CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCc
Q 013373 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP 280 (444)
Q Consensus 201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~ 280 (444)
...++.++|. .+++++.+++++.+++++|.+++++.+||+|+ ++++|+||..|+... . ...+
T Consensus 86 ~~VKv~eim~----~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~-------~-----~~~~ 147 (475)
T TIGR01303 86 AFVKSRDLVL----DTPITLAPHDTVSDAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGV-------D-----RFTQ 147 (475)
T ss_pred hhcchhhccc----cCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcC-------C-----CCCC
Confidence 3455667776 66899999999999999999999999999985 689999999998321 1 2357
Q ss_pred ccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373 281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 281 v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
+.+ +|+. +++++.+++++.+++++|.+++++.+||+|+ +++++|+||.+||++....
T Consensus 148 V~d----IMt~-~litv~~~~sL~eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 148 VRD----IMST-DLVTAPADTEPRKAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGALRATIY 204 (475)
T ss_pred HHH----HccC-CceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhC
Confidence 888 7886 8999999999999999999999999999998 7999999999999987654
No 142
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.26 E-value=1.3e-10 Score=95.24 Aligned_cols=108 Identities=16% Similarity=0.204 Sum_probs=92.4
Q ss_pred ceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceE
Q 013373 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 296 (444)
Q Consensus 217 ~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~ 296 (444)
++.+.++.++.++++.|.+++...+||+|+ +++.|+++..|+.+.+..... ....++.+ +|.. ++..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~------~~~~~i~~----~~~~-~~~~ 69 (111)
T cd04589 3 PLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGL------PSSTPVGE----IATF-PLIT 69 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCC------CCCCCHHH----HhCC-CcEE
Confidence 678899999999999999999999999987 689999999999887643210 13456777 6765 7899
Q ss_pred ecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 297 v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
+++++++.++++.|.+++...+||++ +++++|++|..|+++
T Consensus 70 v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~G~it~~dl~~ 110 (111)
T cd04589 70 VDPDDFLFNALLLMTRHRIHRVVVRE--GGEVVGVLEQTDLLS 110 (111)
T ss_pred ECCCCcHHHHHHHHHHhCccEEEEee--CCEEEEEEEhHHhhc
Confidence 99999999999999999999999998 589999999999875
No 143
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=6.5e-11 Score=98.81 Aligned_cols=117 Identities=21% Similarity=0.334 Sum_probs=94.2
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc---ccccccCcccccccCCCCCC
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW---FDIIASQPISDLGLPFMSSD 292 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~---~~~~~~~~v~~l~l~im~~~ 292 (444)
+++++.+++++.++++.|.+++.+++||+|.+ ++++|+++..|+++.......... .......++.+ +|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~- 75 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEK----IMST- 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHH----HhcC-
Confidence 47789999999999999998999999999976 899999999999875321100000 00013446667 5665
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.++.+++++.++++.|.+++.+.+||+++ +|+++|++|..|+++
T Consensus 76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvit~~dl~~ 121 (122)
T cd04635 76 PVYSVTPDDSIATAVELMLEHDIGRLPVVNE-KDQLVGIVDRHDVLK 121 (122)
T ss_pred CCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-CCcEEEEEEhHHhhc
Confidence 7899999999999999999999999999997 799999999999875
No 144
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.26 E-value=1.2e-10 Score=95.46 Aligned_cols=109 Identities=20% Similarity=0.362 Sum_probs=92.4
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
++.++.++.++.++.+.|.+++.+++||+|+ ++++|+++..++.+.+.... . ....++.+ +|.. ++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~-~-----~~~~~i~~----~~~~-~~~ 68 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEG-L-----DPDTPVSE----VMTA-PPI 68 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccC-C-----CccCCHHH----HhCC-CCe
Confidence 4678899999999999999999999999986 79999999999987554321 0 02356777 5665 789
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.+++++.++++.|.+++.+.+||+++ ++++|++|.+|+++
T Consensus 69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 69 TIPPDATVFEALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred EECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 9999999999999999999999999984 89999999999975
No 145
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.26 E-value=9.4e-11 Score=96.34 Aligned_cols=111 Identities=17% Similarity=0.271 Sum_probs=92.7
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
++..+.+++++.++++.|.+++.+.+||++. ++++|+++..|++..+.... .. ....++.+ +|.. ++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~-~~----~~~~~v~~----i~~~-~~~ 69 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQG-LD----PESTLVER----VMTP-NPV 69 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcC-CC----cCcCCHHH----hcCC-CCe
Confidence 4678899999999999999899999999986 79999999999985443221 11 01256778 6765 788
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.+++++.++++.|.+++...+||+++ +++++|+++.+|++.
T Consensus 70 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 70 CATSDTPVLEALHLMVQGKFRHLPVVDK-SGQVVGLLDVTKLTH 112 (113)
T ss_pred EEcCCCCHHHHHHHHHHcCCCcccEECC-CCCEEEEEEHHHhcc
Confidence 9999999999999999999999999997 789999999999864
No 146
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=1.8e-10 Score=93.64 Aligned_cols=104 Identities=18% Similarity=0.368 Sum_probs=90.6
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
++.++..+.++.+++..|.+.+++.+||+++ +++++|+++..+++... ...++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~v~~~~l~~~~---------~~~~~~~~~~~----------- 60 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK-SGELVGIITRKDLLRNP---------EEEQLALLMTR----------- 60 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEHHHHHhcc---------ccchHHHHhcC-----------
Confidence 5678889999999999999999999999997 68999999999997531 12357788764
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
++.++.+++++.+++..|.+++.+.+||+|+ + +++|+||..|+++
T Consensus 61 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~-~~~G~it~~d~~~ 105 (106)
T cd04638 61 -DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-G-KLVGIVTVADIVR 105 (106)
T ss_pred -CCceECCCCCHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHhhc
Confidence 7889999999999999999999999999995 5 9999999999975
No 147
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.26 E-value=8.1e-11 Score=120.03 Aligned_cols=134 Identities=22% Similarity=0.431 Sum_probs=113.7
Q ss_pred cccCcccccccCCCCCC-CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCc
Q 013373 276 IASQPISDLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT 354 (444)
Q Consensus 276 ~~~~~v~~l~l~im~~~-~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~ 354 (444)
+.++++++ +|+++ ++..++.+.++.++.+.+.+++++++||+++..+.++|++..+|++....+... ...
T Consensus 203 l~~~~v~e----iMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-----~~~ 273 (429)
T COG1253 203 LDDRTVRE----IMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-----DLD 273 (429)
T ss_pred cCCcEeee----EeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-----ccc
Confidence 35789999 78873 688899999999999999999999999999547899999999999988664211 011
Q ss_pred HHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccchh
Q 013373 355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDN 432 (444)
Q Consensus 355 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~~ 432 (444)
....+ +++..++++.++.++++.|.+.+.|-..|+|+.| .+.|+||..||+..+++|..+.+++
T Consensus 274 ~~~~~-------------~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG-~~~GlVTleDIiEeIvGei~de~d~ 337 (429)
T COG1253 274 LRVLV-------------RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYG-GVEGLVTLEDIIEEIVGEIPDEHDE 337 (429)
T ss_pred hhhcc-------------cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCC-CeEEEeEHHHHHHHHhCCCcCcccc
Confidence 12222 2889999999999999999999999999999998 9999999999999999988877765
No 148
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.25 E-value=1.3e-10 Score=95.17 Aligned_cols=109 Identities=26% Similarity=0.410 Sum_probs=92.8
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
+++.+.+++++.++++.|.+.+.+++||+|+ ++++|+++..|+.+....... ...++.+ +|.. ++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~-------~~~~~~~----~~~~-~~~ 67 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGRE-------ATVLVGD----VMTR-DPV 67 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcc-------cccCHHH----hccC-CCe
Confidence 4778999999999999999888999999997 799999999999876643210 1134556 5665 789
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.+++++.++++.|.+++.+.+||+++ +++++|++|..|+++
T Consensus 68 ~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 110 (111)
T cd04612 68 TASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLR 110 (111)
T ss_pred EECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhh
Confidence 9999999999999999999999999997 799999999999865
No 149
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.25 E-value=7.8e-11 Score=121.27 Aligned_cols=166 Identities=18% Similarity=0.174 Sum_probs=121.2
Q ss_pred CcchhhhhhHHhhhhhhccchhhhccCCCCCccccccccchhHHhhhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHH
Q 013373 149 GPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLS 228 (444)
Q Consensus 149 ~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~ 228 (444)
.|...+.+.++. |.+.+-.+....+++--... ....++.+.+ .+|.+++.... ....++.+++++.+
T Consensus 52 iP~~Satmdtvt-gdalAiala~~gG~g~Ih~n---~sie~qa~lV--------~kVk~~~~g~i-~~~~tV~pd~tl~e 118 (502)
T PRK07107 52 IPLVSAIMQSVS-DDNMAIALAREGGLSFIFGS---QSIESEAAMV--------RRVKNYKAGFV-VSDSNLTPDNTLAD 118 (502)
T ss_pred CChHHHHHHHHh-hHHHHHHHHHcCCCeEeeCC---CCHHHHHHHH--------HHHHHHhcCCc-CCCCEeCCCCcHHH
Confidence 376666666555 78877777777776621111 0112222211 23555554211 22468999999999
Q ss_pred HHHHHHhCCCCEEEEecCC--CCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCC-CCceEecCCCcHHH
Q 013373 229 VLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS-DEVITIQSNELILE 305 (444)
Q Consensus 229 a~~~l~~~~i~~lpVvd~~--~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~-~~~~~v~~~~sl~e 305 (444)
|++.|.+++++.+||+|++ +++++|+||..|+.... . ..+.++++ +|++ .+++++.+++++.+
T Consensus 119 Al~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-~---------~~~~~V~d----IMt~~~~~itv~~d~~l~e 184 (502)
T PRK07107 119 VLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR-M---------SLDTKVKD----FMTPFEKLVTANEGTTLKE 184 (502)
T ss_pred HHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc-c---------CCCCCHHH----HhCCCCCeEEECCCCcHHH
Confidence 9999999999999999962 37999999999985321 0 14568899 7874 26789999999999
Q ss_pred HHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373 306 AFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 306 a~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
|+++|.++++..+||+|+ +++++|+||.+|+++...
T Consensus 185 Al~lM~e~~i~~LPVVD~-~g~LvGIIT~~Dilk~~~ 220 (502)
T PRK07107 185 ANDIIWDHKLNTLPIVDK-NGNLVYLVFRKDYDSHKE 220 (502)
T ss_pred HHHHHHHcCCCEEEEEcC-CCeEEEEEEhHHHHhccc
Confidence 999999999999999997 789999999999988643
No 150
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.24 E-value=2.1e-10 Score=94.14 Aligned_cols=110 Identities=23% Similarity=0.358 Sum_probs=92.2
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
++.++.+++++.++++.|.+.+.+.+||+|+ ++++|+++..|+.+.+...... ....++.+ +|.. ++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~-----~~~~~~~~----~~~~-~~~ 69 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLK-----PREVPVGE----VMST-PLI 69 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCC-----cccCCHHH----hcCC-CcE
Confidence 4678899999999999999889999999996 4899999999999866432100 12346777 6765 788
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.+++++.++++.|.+++...+||+++ + +++|+|+.+|+++
T Consensus 70 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~di~~ 111 (112)
T cd04802 70 TIDPNASLNEAAKLMAKHGIKRLPVVDD-D-ELVGIVTTTDIVM 111 (112)
T ss_pred EECCCCCHHHHHHHHHHcCCCeeEEeeC-C-EEEEEEEhhhhhc
Confidence 9999999999999999999999999996 4 9999999999863
No 151
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1e-10 Score=97.59 Aligned_cols=116 Identities=18% Similarity=0.322 Sum_probs=94.2
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccc----ccccCcccccccCCCCC
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD----IIASQPISDLGLPFMSS 291 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~----~~~~~~v~~l~l~im~~ 291 (444)
+++++.+++++.++++.|.++++.++||+|+ ++++|+++..++.+.+.......... .....++.+ +|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 75 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ----IMTR 75 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH----hhcC
Confidence 3678999999999999999999999999996 79999999999988664321000000 001235777 6765
Q ss_pred CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 292 ~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.++.+++++.++++.|.+++...+||+++ +++++|+++..|+++
T Consensus 76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-~~~~~Gvit~~dll~ 121 (122)
T cd04637 76 -DPITVSPDTPVDEASKLLLENSISCLPVVDE-NGQLIGIITWKDLLK 121 (122)
T ss_pred -CCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-CCCEEEEEEHHHhhh
Confidence 7899999999999999999999999999987 789999999999975
No 152
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.23 E-value=1.4e-10 Score=119.66 Aligned_cols=125 Identities=22% Similarity=0.357 Sum_probs=102.9
Q ss_pred ccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccccccc
Q 013373 273 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 352 (444)
Q Consensus 273 ~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~ 352 (444)
+..+...++++ +|.+ ++.++.+++++.++++.|.+++++.+||+|+ +++++|+|+.+|+++.+..... ...
T Consensus 329 ~~~l~~~~v~~----im~~-~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~---~~~ 399 (454)
T TIGR01137 329 FDVLKNATVKD----LHLP-APVTVHPTETVGDAIEILREYGFDQLPVVTE-AGKVLGSVTLRELLSALFAGKA---NPD 399 (454)
T ss_pred HHHhccCCHHH----hCcC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhccCC---CcC
Confidence 33355678888 7876 8999999999999999999999999999997 7899999999999986643211 124
Q ss_pred CcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013373 353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF 422 (444)
Q Consensus 353 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l 422 (444)
.++.++|.. ++.++++++++.++++.|.+++ .+||++++ +++|+||++||++.|
T Consensus 400 ~~v~~im~~------------~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g-~liGvvt~~dll~~l 453 (454)
T TIGR01137 400 DAVSKVMSK------------KFIQIGEGEKLSDLSKFLEKNS---SAIVTEEG-KPIGVVTKIDLLSFL 453 (454)
T ss_pred CCHHHhcCC------------CCeEECCcCcHHHHHHHHHHCC---eeEEEECC-EEEEEEEHHHHHHhh
Confidence 579999974 7889999999999999998753 35565566 999999999999875
No 153
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.22 E-value=2e-10 Score=94.82 Aligned_cols=106 Identities=18% Similarity=0.331 Sum_probs=88.8
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecC---CCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCC
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEP---GTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD 292 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~---~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~ 292 (444)
++..+.+++++.++++.|.+++...+||+|. + ++++|+++..|+..... ...++.+ +|..
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~-~~~~G~v~~~dl~~~~~-----------~~~~v~~----~~~~- 65 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSG-GKLLGIVTSRDIDFLTD-----------SETPLSE----VMTP- 65 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcC-CEEEEEEEhHHhhhhhc-----------cCCCHHH----hcCC-
Confidence 4678899999999999999889999999996 4 79999999999864211 1245777 6765
Q ss_pred CceEecC--CCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 293 EVITIQS--NELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 293 ~~~~v~~--~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
+..++.. ++++.++++.|.+++...+||+++ +++++|+||.+|+++
T Consensus 66 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-~~~~~Gvit~~di~~ 113 (114)
T cd04602 66 REVLVVAPTGITLEEANEILRESKKGKLPIVND-DGELVALVTRSDLKK 113 (114)
T ss_pred CceEEECCCCCCHHHHHHHHHhcCCCceeEECC-CCeEEEEEEHHHhhc
Confidence 5666655 999999999999999999999987 789999999999864
No 154
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.22 E-value=1.9e-10 Score=95.68 Aligned_cols=116 Identities=19% Similarity=0.362 Sum_probs=94.0
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcc---cccccCcccccccCCCCCC
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF---DIIASQPISDLGLPFMSSD 292 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~---~~~~~~~v~~l~l~im~~~ 292 (444)
++.++++++++.+|++.|.+.+.+++||+|.+ ++++|+++..++.+........... ......++.+ +|..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~- 75 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKE----IMTK- 75 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHH----HhhC-
Confidence 46788999999999999998999999999987 8999999999998765322111000 0123456777 5765
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.++.+++++.++++.|.+++...+||++ +++++|+++.+|+++
T Consensus 76 ~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvv~~~di~~ 120 (121)
T cd04584 76 DVITVHPLDTVEEAALLMREHRIGCLPVVE--DGRLVGIITETDLLR 120 (121)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCeEEEee--CCEEEEEEEHHHhhc
Confidence 789999999999999999999999999998 489999999999864
No 155
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.22 E-value=2.4e-10 Score=93.84 Aligned_cols=110 Identities=22% Similarity=0.434 Sum_probs=91.8
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHH-HHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV-QGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~-~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~ 294 (444)
++.++.+++++.+|++.|.+++.+.+||+|+ +++.|+++..|++ +.+.... . ....++.+ +|.. .+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~--~----~~~~~~~~----~~~~-~~ 68 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGR--D----PDTTTVGD----VMTR-GV 68 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccC--C----cccCCHHH----hccC-Cc
Confidence 4678999999999999999999999999986 7999999999986 3333221 1 12234777 6765 78
Q ss_pred eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
.++.+++++.++++.|.+.+.+.+||+++ +++++|+++..|+++
T Consensus 69 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 112 (113)
T cd04622 69 VTVTEDDDVDEAARLMREHQVRRLPVVDD-DGRLVGIVSLGDLAR 112 (113)
T ss_pred cEECCCCCHHHHHHHHHHcCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 89999999999999999999999999987 689999999999864
No 156
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=1.6e-10 Score=96.20 Aligned_cols=115 Identities=30% Similarity=0.461 Sum_probs=93.6
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCC----cccccccCcccccccCCCCC
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD----WFDIIASQPISDLGLPFMSS 291 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~----~~~~~~~~~v~~l~l~im~~ 291 (444)
+++.+.+++++.++++.|.+++++.+||+|+ ++++|+++..++.+.+....... ....+...++.+ +|..
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 75 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD----IMTR 75 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHH----HccC
Confidence 4778999999999999999999999999996 79999999999987655321100 001122346666 5765
Q ss_pred CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 292 ~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.++.+++++.++++.|.+.+.+.+||+++ ++++|+++.+|+++
T Consensus 76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 76 -PVITIEPDTSVSDVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred -CceEECCCCcHHHHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 7899999999999999999999999999994 89999999999875
No 157
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.20 E-value=1.7e-10 Score=94.35 Aligned_cols=102 Identities=17% Similarity=0.342 Sum_probs=87.1
Q ss_pred eeCCCCHHHHHHHHHhCC-----CCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373 220 VATDDSMLSVLLLLSKYR-----LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (444)
Q Consensus 220 v~~~~sl~~a~~~l~~~~-----i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~ 294 (444)
+.+++++.++++.|.+++ +..+||+|++ ++++|+++..++++. . ...++.+ +|.. ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~---~---------~~~~v~~----~~~~-~~ 63 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLA---D---------PDTPVSD----IMDT-DV 63 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcC---C---------CcchHHH----HhCC-CC
Confidence 568899999999998777 4789999976 799999999998751 0 2346777 6665 78
Q ss_pred eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHH
Q 013373 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL 340 (444)
Q Consensus 295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~ 340 (444)
..+.+++++.++++.|.+++...+||+++ +++++|++|..|+++.
T Consensus 64 ~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dll~~ 108 (109)
T cd04606 64 ISVSADDDQEEVARLFEKYDLLALPVVDE-EGRLVGIITVDDVIDV 108 (109)
T ss_pred eEEcCCCCHHHHHHHHHHcCCceeeeECC-CCcEEEEEEhHHhhhh
Confidence 99999999999999999999999999997 7899999999999865
No 158
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.20 E-value=1.7e-10 Score=94.18 Aligned_cols=107 Identities=20% Similarity=0.431 Sum_probs=89.9
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~ 294 (444)
.++..+.+++++.++++.|.+++...+||+|++ ++++|+++..++..... ...++.+ +|.. .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-----------~~~~v~~----~~~~-~~ 64 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-----------LDKPVSE----VMTP-EN 64 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-----------CCCCHHH----hccc-Cc
Confidence 357889999999999999999999999999987 89999999999853210 2346777 6764 55
Q ss_pred eEecC-CCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 295 ITIQS-NELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 295 ~~v~~-~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
..+.. ++++.++++.|.+++.+.+||+++ +++++|+||.+|+++
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~ 109 (110)
T cd04601 65 LLTTVEGTSLEEALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK 109 (110)
T ss_pred eEEecCCCCHHHHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence 66666 999999999999999999999997 789999999999864
No 159
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.20 E-value=2.8e-10 Score=92.18 Aligned_cols=102 Identities=26% Similarity=0.421 Sum_probs=88.8
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
++..+.+++++.++++.|.+++.+.+||+| + ++++|+++..++.+.. ...++.+ +|.. ++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~------------~~~~~~~----~~~~-~~~ 62 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAH------------PNRLVAD----AMTR-EVV 62 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhccc------------ccCCHHH----HccC-CCE
Confidence 467789999999999999989999999998 4 7999999999997632 1235667 6765 789
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll 338 (444)
++.+++++.++++.|.+++...+||++ +++++|++|.+|++
T Consensus 63 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~G~it~~~l~ 103 (105)
T cd04599 63 TISPEASLLEAKRLMEEKKIERLPVLR--ERKLVGIITKGTIA 103 (105)
T ss_pred EECCCCCHHHHHHHHHHcCCCEeeEEE--CCEEEEEEEHHHhc
Confidence 999999999999999999999999999 48999999999986
No 160
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.20 E-value=1.7e-10 Score=110.64 Aligned_cols=113 Identities=21% Similarity=0.349 Sum_probs=98.3
Q ss_pred CcHHHhhhhcCCCC-ceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcc
Q 013373 203 TTVRSIIKSYRWAP-FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (444)
Q Consensus 203 ~~v~di~~~~~~~~-~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v 281 (444)
.+++++|. .+ +..+.+++++.++++.|.+.+++.+||+|++ ++++|+++..|+.+.+.... ....++
T Consensus 155 ~~v~~im~----~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~-------~~~~~v 222 (268)
T TIGR00393 155 VKVKDLMQ----TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGG-------SLKSEV 222 (268)
T ss_pred hhHHHHhC----CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCC-------cccCcH
Confidence 57899997 55 8899999999999999999999999999987 89999999999988654321 134678
Q ss_pred cccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEe
Q 013373 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVS 333 (444)
Q Consensus 282 ~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt 333 (444)
++ +|.+ ++.++.+++++.++++.|.+++...+||+|+ +|+++|+|+
T Consensus 223 ~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~l~GvI~ 268 (268)
T TIGR00393 223 RD----FMTL-GPKTFKLDALLLEALEFLERRKITSLVVVDD-HNKVLGVLH 268 (268)
T ss_pred HH----hCCC-CCeEECCCCcHHHHHHHHHHcCCcEEEEECC-CCeEEEEEC
Confidence 88 7876 7899999999999999999999999999997 789999985
No 161
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.20 E-value=2.7e-10 Score=92.93 Aligned_cols=108 Identities=20% Similarity=0.322 Sum_probs=89.4
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
++.++.+++++.++++.|.+++++++||+|. ++++|+++..|+.+.+...... ...++.+ +|.. ++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~------~~~~~~~----~~~~-~~~ 68 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAK------FSLPVRE----VMGE-PLP 68 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccc------cCcCHHH----HhcC-CCc
Confidence 4678899999999999999999999999996 7999999999999876543210 1346777 5765 788
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++++++++.++.+.|.+ .. .+||+++ +++++|++|.+|+++
T Consensus 69 ~v~~~~~l~~~~~~~~~-~~-~~~vv~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04609 69 TVDPDAPIEELSELLDR-GN-VAVVVDE-GGKFVGIITRADLLK 109 (110)
T ss_pred eeCCCCcHHHHHHHHHh-CC-ceeEEec-CCeEEEEEeHHHhhc
Confidence 99999999999999987 33 4788887 799999999999975
No 162
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.20 E-value=4.3e-10 Score=92.89 Aligned_cols=108 Identities=27% Similarity=0.498 Sum_probs=94.7
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~ 294 (444)
..++++.++.++.+|+..|.++++..+||++. .+++|++|..|+++.+...... ..++.+ +|+. ++
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~-------~~~v~~----v~~~-~~ 72 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKR-------LLPVKE----VMTK-PV 72 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCc-------cccHHH----hccC-Cc
Confidence 45899999999999999999999999999986 3799999999999988765211 115777 7875 89
Q ss_pred eEecCCCcHHHHHHHHHH-cCCCeEeEEeCCCC-eEEEEEeHHHH
Q 013373 295 ITIQSNELILEAFKRMKD-NNIGGIPVVEGQQK-KIVGNVSIRDI 337 (444)
Q Consensus 295 ~~v~~~~sl~ea~~~m~~-~~~~~lpVvd~~~~-~lvGiIt~~Dl 337 (444)
.++.++.++.++.+.|.+ ++++.+||+++ ++ +++|++|.+|+
T Consensus 73 ~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-~~~~lvGivt~~di 116 (117)
T COG0517 73 VTVDPDTPLEEALELMVERHKIRRLPVVDD-DGGKLVGIITLSDI 116 (117)
T ss_pred EEECCCCCHHHHHHHHHHHcCcCeEEEEEC-CCCeEEEEEEHHHc
Confidence 999999999999999999 69999999997 65 99999999997
No 163
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.19 E-value=4e-10 Score=91.57 Aligned_cols=111 Identities=22% Similarity=0.387 Sum_probs=93.3
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
++..+.++.++.++++.|.+++.+++||++++ ++++|+++..|+...+....... ...+.+ +|.. ++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~------~~~~~~----~~~~-~~~ 69 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDP------LVTVGD----VMTR-DVV 69 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCc------cccHHH----HhcC-Cce
Confidence 46788999999999999999899999999987 79999999999998776432111 111445 5665 788
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.+++++.++++.|.+++.+.+||+++ +++++|+++..|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~ 112 (113)
T cd02205 70 TVSPDTSLEEAAELMLEHGIRRLPVVDD-EGRLVGIVTRSDILR 112 (113)
T ss_pred ecCCCcCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHhhc
Confidence 8999999999999999999999999998 799999999999864
No 164
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.16 E-value=2.1e-10 Score=102.86 Aligned_cols=171 Identities=15% Similarity=0.301 Sum_probs=134.8
Q ss_pred CCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCC-CCceEecCCC
Q 013373 223 DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS-DEVITIQSNE 301 (444)
Q Consensus 223 ~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~-~~~~~v~~~~ 301 (444)
-.+-.+.+.++++...+.+ +|.++ .+++.-..+ +.+..|++ +|-+ ++.+++..+.
T Consensus 31 pknr~eLl~liRdse~n~L--iD~dt---------~~mlEGvm~---------iadl~vrD----iMIPRSQM~~l~~~~ 86 (293)
T COG4535 31 PKNREELLELIRDSEQNEL--IDADT---------LDMLEGVMD---------IADLRVRD----IMIPRSQMITLKRNQ 86 (293)
T ss_pred CcCHHHHHHHHHHhhhccc--cChhH---------HHHHHHHHH---------HHHhhHhh----hcccHHHheeccccC
Confidence 3466788888877655543 34331 122222221 14567888 5654 4789999999
Q ss_pred cHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCeEecCC
Q 013373 302 LILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLE 381 (444)
Q Consensus 302 sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~ 381 (444)
++.+++..+.+...+++||+.++.+.+.|++-.+|+++++.+... ...+.+++. |.+.|+++
T Consensus 87 ~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~-----~F~i~~lLR-------------Pav~VPES 148 (293)
T COG4535 87 TLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE-----PFDIKELLR-------------PAVVVPES 148 (293)
T ss_pred CHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc-----cccHHHhcc-------------cceecccc
Confidence 999999999999999999998767899999999999998765322 235778876 88999999
Q ss_pred CCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccchhhhhh
Q 013373 382 STLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGF 436 (444)
Q Consensus 382 ~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~~~~~~ 436 (444)
-.+...++-|...+.|-..|||+.| -+-|.||..|||..++++..+.|+.--..
T Consensus 149 Krvd~lLkeFR~~RnHMAIViDEfG-gVsGLVTIEDiLEqIVGdIEDE~Deee~~ 202 (293)
T COG4535 149 KRVDRLLKEFRSQRNHMAIVIDEFG-GVSGLVTIEDILEQIVGDIEDEYDEEEDA 202 (293)
T ss_pred hhHHHHHHHHHhhcCceEEEEeccC-CeeeeEEHHHHHHHHhcccccccchhhhh
Confidence 9999999999999999999999998 99999999999999999999988764333
No 165
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.16 E-value=6e-10 Score=90.44 Aligned_cols=100 Identities=16% Similarity=0.243 Sum_probs=86.9
Q ss_pred eEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceEe
Q 013373 218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITI 297 (444)
Q Consensus 218 v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~v 297 (444)
+++.+++++.++++.|.+.+...+||+|. ++++|+++..|+.+.. ..++.+ +|.. ++.++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~-------------~~~~~~----~~~~-~~~~v 63 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENAT-------------YGDVVD----YIVR-GIPYV 63 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhc-------------ccchhh----hhhc-CCcEE
Confidence 56789999999999999999999999996 7999999999997531 124566 5665 68899
Q ss_pred cCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 298 QSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 298 ~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
.+++++.++++.|.+++.+.+||++ +|+++|++|..|++.
T Consensus 64 ~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~ 103 (104)
T cd04594 64 RLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD 103 (104)
T ss_pred cCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence 9999999999999999999999998 589999999999864
No 166
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.15 E-value=5.8e-10 Score=90.62 Aligned_cols=105 Identities=16% Similarity=0.354 Sum_probs=90.6
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~ 294 (444)
.+++++..+.++.++++.|.+++...+||+|+ ++++|+++..|++.. . ...++.+ +|.. ++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~---~---------~~~~~~~----~~~~-~~ 62 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGK---D---------PDETVEE----IMSK-DL 62 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhcc---C---------ccccHHH----hCCC-CC
Confidence 35788999999999999998888889999985 799999999998752 1 2346777 6765 78
Q ss_pred eEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 295 ~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
.++.+++++.++++.|.+++.+.+||+++ +|+++|+++..|+++
T Consensus 63 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvi~~~di~~ 106 (107)
T cd04610 63 VVAVPEMDIMDAARVMFRTGISKLPVVDE-NNNLVGIITNTDVIR 106 (107)
T ss_pred eEECCCCCHHHHHHHHHHhCCCeEeEECC-CCeEEEEEEHHHhhc
Confidence 89999999999999999999999999997 789999999999874
No 167
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.15 E-value=2.3e-10 Score=108.22 Aligned_cols=120 Identities=19% Similarity=0.262 Sum_probs=108.1
Q ss_pred CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013373 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282 (444)
Q Consensus 203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~ 282 (444)
.+|.|+|... .....+.+++++.+-.++-.+.|..|+||+|.. .+++|++|.+|+...- .+.++.
T Consensus 188 ~~Vedi~~P~--~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~------------~~t~ie 252 (432)
T COG4109 188 ITVEDIMTPL--EDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKK------------PSTTIE 252 (432)
T ss_pred eeHHHhcccc--ccceeccccccHHHHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCC------------CCccHH
Confidence 5789999854 668899999999999999999999999999987 7999999999996521 456788
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373 283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
. +|++ +++++.+.+++..+.+.|.=.++.-+||+++ +.+++|+||++|+++.+..
T Consensus 253 K----VMtk-np~tv~~~tsVAsvaq~MiwE~iem~PVv~~-n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 253 K----VMTK-NPITVRAKTSVASVAQMMIWEGIEMLPVVDS-NNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred H----Hhcc-CCeeecccchHHHHHHHHHhccceeeeEEcC-CceEEEEEEHHHHHHHHHH
Confidence 8 8997 8999999999999999999999999999998 8999999999999998863
No 168
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.14 E-value=7e-10 Score=90.46 Aligned_cols=100 Identities=16% Similarity=0.336 Sum_probs=87.1
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCC--CCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCC
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE 293 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~--~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~ 293 (444)
....+.+++++.++...|.+.+...+||+|+. .++++|+++..|+.+.... +|.. +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------------~m~~-~ 60 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------------YIDP-S 60 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------hccC-C
Confidence 36788999999999999999889999999972 2899999999999765432 2554 7
Q ss_pred ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 294 ~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
+.++.+++++.++++.|.+++.+.+||++ +|+++|++|.+|+++
T Consensus 61 ~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 61 PFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLK 104 (105)
T ss_pred CceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhc
Confidence 88999999999999999999999999996 789999999999875
No 169
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.14 E-value=4.7e-10 Score=115.75 Aligned_cols=112 Identities=19% Similarity=0.213 Sum_probs=98.6
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC--CCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCC
Q 013373 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD 292 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~--~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~ 292 (444)
.+++++.+++++.+|+++|.+++++.+||+|++ .++++|+||..|+.... . .+.+|.+ +|++
T Consensus 108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~--~---------~~~~V~e----IMt~- 171 (505)
T PLN02274 108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN--D---------RETKLSE----VMTS- 171 (505)
T ss_pred CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc--c---------cCCcHHH----Hhcc-
Confidence 568999999999999999999999999999873 27999999999995421 1 3567888 7875
Q ss_pred C--ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373 293 E--VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 293 ~--~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
+ ++++.+++++.++++.|.++++..+||+|+ +++++|+||.+|+++.+..
T Consensus 172 ~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 172 DDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhC
Confidence 4 789999999999999999999999999998 7899999999999988764
No 170
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.11 E-value=1e-09 Score=113.34 Aligned_cols=122 Identities=20% Similarity=0.321 Sum_probs=101.0
Q ss_pred CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013373 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (444)
Q Consensus 200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~ 279 (444)
+...+++++|. .++.++.+++++.++++.|.+++++.+||+|++ ++++|+||..|+.+.+...... ...
T Consensus 332 l~~~~v~~im~----~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~------~~~ 400 (454)
T TIGR01137 332 LKNATVKDLHL----PAPVTVHPTETVGDAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKAN------PDD 400 (454)
T ss_pred hccCCHHHhCc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCC------cCC
Confidence 45678899987 679999999999999999999999999999976 7999999999999876542110 234
Q ss_pred cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHh
Q 013373 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 341 (444)
Q Consensus 280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l 341 (444)
++.+ +|.. ++.++.+++++.++++.|.+++ .+||++ +++++|+||.+|++..+
T Consensus 401 ~v~~----im~~-~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 401 AVSK----VMSK-KFIQIGEGEKLSDLSKFLEKNS---SAIVTE-EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CHHH----hcCC-CCeEECCcCcHHHHHHHHHHCC---eeEEEE-CCEEEEEEEHHHHHHhh
Confidence 7888 6876 7889999999999999998754 355555 78999999999998875
No 171
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.11 E-value=5.4e-10 Score=114.45 Aligned_cols=112 Identities=23% Similarity=0.419 Sum_probs=97.8
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCC--CcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCC
Q 013373 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT--PDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD 292 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~--~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~ 292 (444)
.+++++.+++++.+++++|.+++++++||+|++. ++++|++|.+|+.... . ...++.+ +|++.
T Consensus 88 ~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~--~---------~~~~V~d----vm~~~ 152 (450)
T TIGR01302 88 SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK--D---------KGKPVSE----VMTRE 152 (450)
T ss_pred cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh--c---------CCCCHHH----hhCCC
Confidence 5689999999999999999999999999999753 5899999999996421 1 2457888 67722
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
+++++.+++++.++++.|.+++.+.+||+|+ +|+++|+||.+|+++.+.
T Consensus 153 ~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe-~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 153 EVITVPEGIDLEEALKVLHEHRIEKLPVVDK-NGELVGLITMKDIVKRRK 201 (450)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEhHHhhhccc
Confidence 7899999999999999999999999999998 899999999999998764
No 172
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.11 E-value=1.3e-09 Score=94.12 Aligned_cols=115 Identities=23% Similarity=0.339 Sum_probs=92.9
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc--c--------------------
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW--F-------------------- 273 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~--~-------------------- 273 (444)
+++++.+++++.++++.|.+.++..+||+|+ ++++|+++..|+.+++........ .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET 79 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence 4778999999999999999999999999996 799999999999887753210000 0
Q ss_pred ----cccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 274 ----DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 274 ----~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
......++.+ +|.. ++.++.+++++.+++..|.+++.+.+||+++ ++++|+++.+|++.
T Consensus 80 ~~~~~~~~~~~v~~----~~~~-~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 80 KRALTDAGKMKVRD----IMTK-KVITISPDASIEDAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHHhcCCHHH----HcCC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 0012345666 5665 7899999999999999999999999999984 89999999999863
No 173
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.08 E-value=1.4e-09 Score=92.85 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=82.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccccc--------ccCcHHHHhcccCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF--------RQLTVRDFMNAVVP 364 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~--------~~~~v~~~m~~~~~ 364 (444)
++.++.+++++.+|++.|..++++.+||+|+ +++++|++|.+|+++.+......... ....+.++|....-
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 80 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-DDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS 80 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence 5789999999999999999999999999998 79999999999999887532221000 01123445531000
Q ss_pred CCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCC
Q 013373 365 TTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 406 (444)
Q Consensus 365 ~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~ 406 (444)
......+++++.+++++.+|++.|.+++++++||+|+.+
T Consensus 81 ---~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 81 ---YGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred ---hcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 000013789999999999999999999999999998754
No 174
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.08 E-value=2.1e-09 Score=87.31 Aligned_cols=104 Identities=27% Similarity=0.437 Sum_probs=88.6
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCce
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI 295 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~ 295 (444)
++.++.++.++.+++..|.+.+...+||++++ ++++|+++..++.... ...++.+ +|.. ++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~------------~~~~~~~----~~~~-~~~ 63 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNP------------EEEQLAL----LMTR-DPP 63 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhcc------------ccchHHH----HhcC-CCc
Confidence 47788999999999999998889999999987 7999999999996521 1234566 5665 788
Q ss_pred EecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 296 ~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
++.+++++.+++..|.+++.+.+||+++ ++++|+++..|++.
T Consensus 64 ~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 64 TVSPDDDVKEAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred eECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 8999999999999999999999999984 69999999999864
No 175
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.08 E-value=1.7e-09 Score=111.62 Aligned_cols=112 Identities=17% Similarity=0.238 Sum_probs=97.0
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC--CCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCC-
Q 013373 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS- 291 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~--~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~- 291 (444)
.+++++.+++++.+|+++|.+++++.+||+|++ .++++|++|..|+... . . ...++++ +|++
T Consensus 104 ~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~-~-~---------~~~~V~d----iMt~~ 168 (495)
T PTZ00314 104 MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV-K-D---------KSTPVSE----VMTPR 168 (495)
T ss_pred cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc-c-c---------CCCCHHH----hhCCc
Confidence 568899999999999999999999999999873 3789999999998621 1 1 3467888 7863
Q ss_pred CCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 292 ~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
.+++++.+++++.+++++|.++++..+||+|+ +++++|+||.+|+++...
T Consensus 169 ~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~-~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 169 EKLVVGNTPISLEEANEVLRESRKGKLPIVND-NGELVALVSRSDLKKNRG 218 (495)
T ss_pred CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEehHhhhccc
Confidence 36889999999999999999999999999998 899999999999988754
No 176
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.07 E-value=6.1e-10 Score=106.48 Aligned_cols=128 Identities=21% Similarity=0.350 Sum_probs=109.2
Q ss_pred ccCcccccccCCCCCC-CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373 277 ASQPISDLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV 355 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~-~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v 355 (444)
.+.+|+| +|.++ ++..+..+++..++++.+.+..+.++|+..++-++++|++..+|+++++.+... .+-
T Consensus 198 e~~tV~D----IMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~------~~k 267 (423)
T COG4536 198 ENLTVSD----IMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE------FTK 267 (423)
T ss_pred ccceeee----eeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc------ccH
Confidence 4568999 78663 678899999999999999999999999998756789999999999999886432 233
Q ss_pred HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcC
Q 013373 356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE 425 (444)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e 425 (444)
.++++.. .+|.++++.+++.+-+..|.+++-|--.|||+.| .+.|+||+.||+..++++
T Consensus 268 ~d~~~~a----------~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG-~i~GLVTLEDIlEEIVGd 326 (423)
T COG4536 268 EDILRAA----------DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYG-DIQGLVTLEDILEEIVGD 326 (423)
T ss_pred hHHHHHh----------cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccC-cEEeeeeHHHHHHHHhcc
Confidence 4444311 2789999999999999999999999999999998 999999999999999973
No 177
>PRK11573 hypothetical protein; Provisional
Probab=99.07 E-value=3.4e-09 Score=107.30 Aligned_cols=172 Identities=11% Similarity=0.139 Sum_probs=126.0
Q ss_pred hhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcc
Q 013373 194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF 273 (444)
Q Consensus 194 l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~ 273 (444)
+.+--.+...+++++|... .+++.++.++++.++++.+.+++++|+||++++..+++|++..+|++..+.....
T Consensus 178 i~~vl~l~~~~v~eiMtPr--~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~---- 251 (413)
T PRK11573 178 LLSVLDLEKVTVDDIMVPR--NEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE---- 251 (413)
T ss_pred HHHHhccCCCChhhcCCcc--ceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCc----
Confidence 3344567889999999954 7899999999999999999999999999998766789999999999876543210
Q ss_pred cccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccC
Q 013373 274 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL 353 (444)
Q Consensus 274 ~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~ 353 (444)
.....+.+ ++. ++..|+++.++.++++.|.+++.+-..|+|+ -|...|+||..|++..+.. +........
T Consensus 252 --~~~~~l~~----~~r--~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE-yG~~~GiVTleDilEeivG-ei~de~d~~ 321 (413)
T PRK11573 252 --FTKENMLR----AAD--EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIVG-DFTTSMSPT 321 (413)
T ss_pred --CCHHHHHh----hcc--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEec-CCCeEEEeeHHHHHHHHhC-CCCcccCcc
Confidence 01122334 343 6889999999999999999999999999998 8999999999999987653 111111000
Q ss_pred cHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHH
Q 013373 354 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSL 391 (444)
Q Consensus 354 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m 391 (444)
.-..+.. .......++...++.++-+.+
T Consensus 322 ~~~~i~~----------~~~~~~~v~G~~~l~d~~~~l 349 (413)
T PRK11573 322 LAEEVTP----------QNDGSVIIDGTANVREINKAF 349 (413)
T ss_pred cccceEE----------ecCCEEEEEeeeEHHHHHHHh
Confidence 0000111 012446677777777777765
No 178
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.05 E-value=2.2e-09 Score=89.03 Aligned_cols=113 Identities=16% Similarity=0.272 Sum_probs=90.2
Q ss_pred CceEeeCCCCHHHHHHHHHhCC-CCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCc
Q 013373 216 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~-i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~ 294 (444)
++.++.+++++.++++.|...+ .+.+||+|+ ++++|+++..|+.+.+....... .....++.+ +|.. ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~---~~~~~~v~~----~~~~-~~ 71 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRA---LYGKKPVSE----VMDP-DP 71 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHH---HHcCCcHHH----hcCC-Cc
Confidence 3567899999999999998876 889999997 79999999999987654321000 013456778 6776 78
Q ss_pred eEecCCCcHHHHHHHHHHcCCC---eEeEEeCCCCeEEEEEeHHHHHH
Q 013373 295 ITIQSNELILEAFKRMKDNNIG---GIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 295 ~~v~~~~sl~ea~~~m~~~~~~---~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
.++.+++++.+++..|.+++.. ..+|+++ +|+++|+||..|+++
T Consensus 72 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~ 118 (119)
T cd04598 72 LIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR 118 (119)
T ss_pred EEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence 9999999999999999988753 4468877 799999999999864
No 179
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.02 E-value=1.8e-09 Score=108.92 Aligned_cols=131 Identities=21% Similarity=0.351 Sum_probs=112.9
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHc-----CCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccc
Q 013373 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN-----NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~-----~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~ 351 (444)
....+.. .|+. .++++.++.|+.+++..+++. .+..+.|+|. +++++|+++.++++.. + .
T Consensus 130 ~e~taG~----~Mt~-e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~-~~~L~Gvvsl~~Ll~a--~-------~ 194 (451)
T COG2239 130 PEDTAGR----IMTT-EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE-KGKLLGVVSLRDLLTA--E-------P 194 (451)
T ss_pred Chhhhhc----ccee-eeEEeccCcCHHHHHHHHHHhcccccccceEEEECC-ccceEEEeeHHHHhcC--C-------c
Confidence 4456666 7887 899999999999999999854 3688999998 8899999999999765 2 2
Q ss_pred cCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCccch
Q 013373 352 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD 431 (444)
Q Consensus 352 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~~~ 431 (444)
+.++.++|.. .++++.+++...++.+.+.+++.-.+||||+++ +++|+||..|++..+-.|....+.
T Consensus 195 ~~~i~~im~~------------~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~-~LiG~itiDDiidvi~eEa~eDi~ 261 (451)
T COG2239 195 DELLKDLMED------------DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDN-RLIGIITIDDIIDVIEEEATEDIL 261 (451)
T ss_pred HhHHHHHhcc------------cceeecccCCHHHHHHHHHHhCCeecceECCCC-ceeeeeeHHHHHHHHHHHHHHHHH
Confidence 4589999985 689999999999999999999999999999998 999999999999999776666555
Q ss_pred hhhh
Q 013373 432 NYFG 435 (444)
Q Consensus 432 ~~~~ 435 (444)
++.+
T Consensus 262 ~~~G 265 (451)
T COG2239 262 RMAG 265 (451)
T ss_pred HhcC
Confidence 5554
No 180
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.97 E-value=6.9e-09 Score=88.54 Aligned_cols=106 Identities=14% Similarity=0.127 Sum_probs=79.6
Q ss_pred CceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCC-ccc----ccccCcccccc-----
Q 013373 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD-WFD----IIASQPISDLG----- 285 (444)
Q Consensus 216 ~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~-~~~----~~~~~~v~~l~----- 285 (444)
++.++.+++++.+|++.|.++++..+||+|++ ++++|++|..|+++++....... ... ......+.++-
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 80 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS 80 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence 37889999999999999999999999999987 89999999999998775432110 000 00011122310
Q ss_pred cCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeC
Q 013373 286 LPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG 323 (444)
Q Consensus 286 l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~ 323 (444)
.+.|.. +++++.+++++.+|++.|.+++++.+||+++
T Consensus 81 ~~~~~~-~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 81 YGGQEC-GLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred hcccCC-CCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 002344 7899999999999999999999999999986
No 181
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.94 E-value=3.9e-09 Score=75.77 Aligned_cols=56 Identities=27% Similarity=0.564 Sum_probs=52.1
Q ss_pred HHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhH
Q 013373 355 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI 423 (444)
Q Consensus 355 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~ 423 (444)
|+++|.+ ++.++++++++.++++.|.+++++++||+|+++ +++|+||.+||++++.
T Consensus 1 v~~~m~~------------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~-~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTP------------PPITVSPDDSLEEALEIMRKNGISRLPVVDEDG-KLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBS------------SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTS-BEEEEEEHHHHHHHHH
T ss_pred CeECCcC------------CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCC-EEEEEEEHHHHHhhhh
Confidence 4677874 899999999999999999999999999999997 9999999999999875
No 182
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.92 E-value=4.1e-08 Score=100.23 Aligned_cols=172 Identities=12% Similarity=0.166 Sum_probs=126.6
Q ss_pred hhhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCc
Q 013373 193 VILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW 272 (444)
Q Consensus 193 ~l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~ 272 (444)
.+.+--.+...+++++|... .+++.++.+.++.++++.+.+++++|+||++.+...++|++..+|++..+.....
T Consensus 196 mi~~v~~l~~~~v~eiMtPR--~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~--- 270 (429)
T COG1253 196 MINNVLDLDDRTVREIMTPR--TDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS--- 270 (429)
T ss_pred HHHHHhccCCcEeeeEeeec--ccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---
Confidence 33444557789999999954 7899999999999999999999999999999656789999999999988765421
Q ss_pred ccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCcccccccc
Q 013373 273 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 352 (444)
Q Consensus 273 ~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~ 352 (444)
...... .+. +++.++++.++.++++.|++.+.+-..|+|+ -|.+.|+||..|++..+.. +.......
T Consensus 271 -----~~~~~~----~~~--~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE-yG~~~GlVTleDIiEeIvG-ei~de~d~ 337 (429)
T COG1253 271 -----DLDLRV----LVR--PPLFVPETLSLSDLLEEFREERTHMAIVVDE-YGGVEGLVTLEDIIEEIVG-EIPDEHDE 337 (429)
T ss_pred -----ccchhh----ccc--CCeEecCCCcHHHHHHHHHHhCCeEEEEEEc-CCCeEEEeEHHHHHHHHhC-CCcCcccc
Confidence 011111 122 6899999999999999999999999999998 8999999999999998763 22111111
Q ss_pred CcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHH
Q 013373 353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLA 392 (444)
Q Consensus 353 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~ 392 (444)
..-.+.... ..+. ..++...++.+.-+.+-
T Consensus 338 ~~~~~~~~~---------~~~~-~~v~G~~~l~e~~~~l~ 367 (429)
T COG1253 338 DEEEDIIQR---------DDDG-WLVDGRVPLEELEELLG 367 (429)
T ss_pred cccccceEe---------cCCc-EEEeccccHHHHHHHhC
Confidence 001111111 0123 66777777777776654
No 183
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.80 E-value=2.9e-07 Score=91.61 Aligned_cols=171 Identities=18% Similarity=0.274 Sum_probs=120.4
Q ss_pred EeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHh-----hcCCCC-CcccccccCcccccccCCCCCC
Q 013373 219 PVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL-----EGCKGR-DWFDIIASQPISDLGLPFMSSD 292 (444)
Q Consensus 219 ~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l-----~~~~~~-~~~~~~~~~~v~~l~l~im~~~ 292 (444)
.+-.+..+.++..+ ..++.++++ |+++..-+..++...- ...... .....+....+.+ .+..
T Consensus 183 ii~vTHd~~ea~~~-----~drI~vl~~--G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~- 250 (363)
T TIGR01186 183 IVFITHDLDEAIRI-----GDRIVIMKA--GEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVFDAERIAQ----RMNT- 250 (363)
T ss_pred EEEEeCCHHHHHHh-----CCEEEEEeC--CEEEeeCCHHHHHhCcccHHHHHHhhccchhcccchhhHhh----hccc-
Confidence 33444445555532 367778865 7888888888775421 100000 0000011111111 1222
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV 372 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~ 372 (444)
......++.+..+++..|...+...+.|+|+ ++++.|.++..++..++.. ..++.+.+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~----------- 310 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVVDR-QNKLVGVVDVESIKQARKK--------AQGLQDVLID----------- 310 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEEcC-CCCEEEEEeHHHHHHHhhc--------CCchhhhhcc-----------
Confidence 3345667778999999999999999999998 8999999999999877542 2257777763
Q ss_pred CCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373 373 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 373 ~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
...+++++++|.+++..|.+++.. +||||+++ +++|+||+.+|++.+..
T Consensus 311 -~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 311 -DIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQ-RLVGIVTRGSLVDALYD 359 (363)
T ss_pred -CCceECCCCcHHHHHHHHHhCCCC-EEEECCCC-cEEEEEEHHHHHHHHHh
Confidence 678899999999999999999988 99999988 99999999999999875
No 184
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.74 E-value=7.1e-08 Score=97.47 Aligned_cols=129 Identities=13% Similarity=0.282 Sum_probs=111.0
Q ss_pred HhhhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHh-----CCCCEEEEecCCCCcEEEEEeHHHHHHHhhc
Q 013373 192 KVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSK-----YRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (444)
Q Consensus 192 ~~l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~-----~~i~~lpVvd~~~~~l~Givt~~di~~~l~~ 266 (444)
..+.+...+...+++.+|. .+++.+.++.|+.+++..+++ ..+..++|+|.+ +++.|+++.++++..
T Consensus 121 ~~v~~~l~y~e~taG~~Mt----~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~Ll~a--- 192 (451)
T COG2239 121 ARVRQLLSYPEDTAGRIMT----TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDLLTA--- 192 (451)
T ss_pred HHHHHhcCCChhhhhccce----eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHHhcC---
Confidence 3444555677788999998 669999999999999999985 356789999998 799999999998641
Q ss_pred CCCCCcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373 267 CKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 267 ~~~~~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
. .+.++++ +|.+ .++++.+++..+++.+.+.+++.-.+||||+ +++++|++|..|++..+..
T Consensus 193 ~---------~~~~i~~----im~~-~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~-~~~LiG~itiDDiidvi~e 254 (451)
T COG2239 193 E---------PDELLKD----LMED-DVVSVLADDDQEEVARLFEKYDLLAVPVVDE-DNRLIGIITIDDIIDVIEE 254 (451)
T ss_pred C---------cHhHHHH----Hhcc-cceeecccCCHHHHHHHHHHhCCeecceECC-CCceeeeeeHHHHHHHHHH
Confidence 1 4568888 7887 6999999999999999999999999999999 8999999999999988753
No 185
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.74 E-value=3.2e-08 Score=95.48 Aligned_cols=161 Identities=22% Similarity=0.294 Sum_probs=122.1
Q ss_pred hCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccc--------cccCcccccccCCCCCCCceEecCCCcHHHH
Q 013373 235 KYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI--------IASQPISDLGLPFMSSDEVITIQSNELILEA 306 (444)
Q Consensus 235 ~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~--------~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea 306 (444)
++.--..|++.. ....||..++..++....+....+. -.-..++.+..++++ +++.++|+.++.++
T Consensus 57 r~itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~g~~~--~p~v~sp~~tvg~v 130 (503)
T KOG2550|consen 57 RNITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYENGFIN--NPIVISPTTTVGEV 130 (503)
T ss_pred hcccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhccccc--CCcccCCcccchhh
Confidence 333444577743 4667888888776654332222211 112345555444554 57888999999999
Q ss_pred HHHHHHcCCCeEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCH
Q 013373 307 FKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTL 384 (444)
Q Consensus 307 ~~~m~~~~~~~lpVvd~~--~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl 384 (444)
++....+++..+||.++. ..+++|+||.+|+-.+ .+ ....+.++|.+ .+++.....+|
T Consensus 131 ~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~-------~~~~~~~vmt~------------~~~~~~~gi~l 190 (503)
T KOG2550|consen 131 KEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-ED-------NSLLVSDVMTK------------NPVTGAQGITL 190 (503)
T ss_pred hhhcccccccccccccCCcccceeEEEEehhhhhhh-hc-------ccchhhhhccc------------ccccccccccH
Confidence 999999999999999742 4689999999999666 21 24578999986 55889999999
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013373 385 GSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF 422 (444)
Q Consensus 385 ~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l 422 (444)
.++-+++.+++-..+||||+++ +++.+|++.|+.+.-
T Consensus 191 ~~~neiL~~~kkGkl~iv~~~g-elva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 191 KEANEILKKIKKGKLPVVDDKG-ELVAMLSRTDLMKNR 227 (503)
T ss_pred HHHHHHHHhhhcCCcceeccCC-ceeeeeehhhhhhhc
Confidence 9999999999999999999998 999999999998754
No 186
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.72 E-value=2.9e-08 Score=89.20 Aligned_cols=139 Identities=11% Similarity=0.192 Sum_probs=116.0
Q ss_pred cchhHHhhhccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhc
Q 013373 187 HEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (444)
Q Consensus 187 ~~~~~~~l~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~ 266 (444)
..+-+..+.+.-.+...+|+|||... ..++++..+.++.+.+..+.+...+|+||+.+++..+.||+-.+|+++++..
T Consensus 51 D~dt~~mlEGvm~iadl~vrDiMIPR--SQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~ 128 (293)
T COG4535 51 DADTLDMLEGVMDIADLRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRS 128 (293)
T ss_pred ChhHHHHHHHHHHHHHhhHhhhcccH--HHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcC
Confidence 34444455444456677899999844 7799999999999999999999999999999887899999999999999875
Q ss_pred CCCCCcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373 267 CKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 267 ~~~~~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
.. ....+++ +. ++.+.|+++..+.-.++.++.++.+-..|+|+ -|.+-|+||..|++..+.
T Consensus 129 ~~--------~~F~i~~----lL--RPav~VPESKrvd~lLkeFR~~RnHMAIViDE-fGgVsGLVTIEDiLEqIV 189 (293)
T COG4535 129 DA--------EPFDIKE----LL--RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE-FGGVSGLVTIEDILEQIV 189 (293)
T ss_pred Cc--------ccccHHH----hc--ccceecccchhHHHHHHHHHhhcCceEEEEec-cCCeeeeEEHHHHHHHHh
Confidence 52 1234566 33 37899999999999999999999999999998 899999999999998764
No 187
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.71 E-value=6.2e-08 Score=69.42 Aligned_cols=56 Identities=23% Similarity=0.457 Sum_probs=51.6
Q ss_pred HHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhh
Q 013373 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (444)
Q Consensus 205 v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~ 265 (444)
|+++|. .+++.+.+++++.++++.|.+++++++||+|++ ++++|++|.+|+++++.
T Consensus 1 v~~~m~----~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMT----PPPITVSPDDSLEEALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSB----SSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHHH
T ss_pred CeECCc----CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhhh
Confidence 467777 679999999999999999999999999999987 89999999999998874
No 188
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=3.8e-07 Score=91.83 Aligned_cols=105 Identities=19% Similarity=0.241 Sum_probs=90.2
Q ss_pred ecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCe
Q 013373 297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPI 376 (444)
Q Consensus 297 v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~ 376 (444)
..++....+++..|..++...++|+|+ +++++|+++..++...... ..++.+.+.. ...
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~------------~~~ 348 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIER-GNKFVGAVSIDSLKTALTQ--------QQGLDAALID------------APL 348 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcC-CCcEEEEEeHHHHHhhhhc--------CCchhhhhcc------------CCc
Confidence 346678899999999999999999998 8999999999999766431 2256666653 678
Q ss_pred EecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373 377 TCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 377 ~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
++.++++|.+++..|.++... +||||+++ +++|+||+.++++.+..
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 349 AVDAQTPLSELLSHVGQAPCA-VPVVDEDQ-QYVGIISKGMLLRALDR 394 (400)
T ss_pred eeCCCCCHHHHHHHHHhCCCc-EEEECCCC-cEEEEEEHHHHHHHHHh
Confidence 999999999999999997755 99999988 99999999999999975
No 189
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.58 E-value=5.9e-07 Score=86.33 Aligned_cols=170 Identities=14% Similarity=0.163 Sum_probs=126.1
Q ss_pred ccCCCCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccc
Q 013373 196 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI 275 (444)
Q Consensus 196 ~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~ 275 (444)
..-.+.+.+|.|+|... .++..++.+++..+.++.+...-..|+|++.++-.+++|++..+|+++++.+... +
T Consensus 193 gvLDLe~~tV~DIMvpR--~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~---~-- 265 (423)
T COG4536 193 GVLDLENLTVSDIMVPR--NEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE---F-- 265 (423)
T ss_pred cccccccceeeeeeccc--cceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc---c--
Confidence 33456688999999854 7799999999999999999999999999998876789999999999999987632 1
Q ss_pred cccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013373 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV 355 (444)
Q Consensus 276 ~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v 355 (444)
....+.. .. .++..+++.+++.+.+..|.+++-+--.|||+ -|.+.|++|..|++.-+.. .+.+......
T Consensus 266 -~k~d~~~----~a--~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE-YG~i~GLVTLEDIlEEIVG--dftde~d~~~ 335 (423)
T COG4536 266 -TKEDILR----AA--DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE-YGDIQGLVTLEDILEEIVG--DFTDEHDTLA 335 (423)
T ss_pred -cHhHHHH----Hh--cCCeecCCCCcHHHHHHHHHHhcceEEEEEec-cCcEEeeeeHHHHHHHHhc--cccccCcccc
Confidence 1222222 11 26889999999999999999999998899998 8999999999999876542 1111112222
Q ss_pred HHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHH
Q 013373 356 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLA 392 (444)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~ 392 (444)
.++... .+.-+.++.+.++.+.=+.|-
T Consensus 336 ~ev~~q----------~dgs~iidGs~~iRdlNr~l~ 362 (423)
T COG4536 336 KEVIPQ----------SDGSFIIDGSANVRDLNRALD 362 (423)
T ss_pred hhhccc----------CCCcEEEeCCCcHHHHHHhcC
Confidence 333321 134466777777777655543
No 190
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.38 E-value=2.7e-06 Score=82.43 Aligned_cols=111 Identities=22% Similarity=0.230 Sum_probs=95.8
Q ss_pred CCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC--CCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCC
Q 013373 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD 292 (444)
Q Consensus 215 ~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~--~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~ 292 (444)
.+++.+.|+.++.++++...++++..+||.++. .++++|+||.+|+- ++.+ ....+.+ +|+.
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~-f~~~----------~~~~~~~----vmt~- 179 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQ-FLED----------NSLLVSD----VMTK- 179 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhh-hhhc----------ccchhhh----hccc-
Confidence 357889999999999999999999999999753 36899999999983 4422 3467788 7887
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
+.++...+.++.++-+++.+.+-..+||+|+ +|+++.+++++||.+.-.
T Consensus 180 ~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-~gelva~~~rtDl~k~~~ 228 (503)
T KOG2550|consen 180 NPVTGAQGITLKEANEILKKIKKGKLPVVDD-KGELVAMLSRTDLMKNRD 228 (503)
T ss_pred ccccccccccHHHHHHHHHhhhcCCcceecc-CCceeeeeehhhhhhhcC
Confidence 5688899999999999999999999999999 999999999999988743
No 191
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.33 E-value=1e-05 Score=80.52 Aligned_cols=108 Identities=18% Similarity=0.338 Sum_probs=91.3
Q ss_pred ceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCcccccccCCCCCCCceE
Q 013373 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 296 (444)
Q Consensus 217 ~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~ 296 (444)
.....++.+..+++..|...+...+.|+|.+ +++.|.++..++..++... ..+.+ .+.. .+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----------~~~~~----~~~~-~~~~ 314 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-----------QGLQD----VLID-DIYT 314 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-----------Cchhh----hhcc-CCce
Confidence 3456677789999999999999999999987 7999999999987765432 23555 4554 6788
Q ss_pred ecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373 297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 297 v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
+.+++++.+++..|.+++.. +||+|+ +|+++|+|+..+++..+..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 315 VDAGTLLRETVRKVLKAGIK-VPVVDE-DQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred ECCCCcHHHHHHHHHhCCCC-EEEECC-CCcEEEEEEHHHHHHHHHh
Confidence 99999999999999999998 999998 8999999999999988763
No 192
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.29 E-value=1.3e-06 Score=88.79 Aligned_cols=149 Identities=23% Similarity=0.293 Sum_probs=108.0
Q ss_pred ccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCC----CeEEEEEeHHHHHHHhcCCcccc----
Q 013373 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ----KKIVGNVSIRDIRHLLLKPELFS---- 348 (444)
Q Consensus 277 ~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~----~~lvGiIt~~Dll~~l~~~~~~~---- 348 (444)
.+..+++ +|++ +++++..-+.+....+.+..+.++++||+|+.. +++.|+|-++.++.++.......
T Consensus 580 r~L~a~e----v~~~-pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~ 654 (762)
T KOG0474|consen 580 RNLTAGE----VMSK-PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRS 654 (762)
T ss_pred hhhhHhh----hccC-CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence 3556777 7887 999999999999999999999999999998632 47899999999988876422111
Q ss_pred -----ccccCcHHHHhcccCC--CCC----------C--CCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeE
Q 013373 349 -----NFRQLTVRDFMNAVVP--TTP----------D--SGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEV 409 (444)
Q Consensus 349 -----~~~~~~v~~~m~~~~~--~~~----------~--~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~l 409 (444)
.....+.+|+..+... +.+ + .-....|.++.+++++..+..++..-+.+++.||+..+ ++
T Consensus 655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~-~~ 733 (762)
T KOG0474|consen 655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTN-RV 733 (762)
T ss_pred ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCC-ce
Confidence 1112223333321000 000 0 11334789999999999999999999999999999987 99
Q ss_pred EEEEeHHHHHHHhHcCCCccch
Q 013373 410 VGVITLRDVISCFIFEPPNHLD 431 (444)
Q Consensus 410 vGvIT~~DIl~~l~~e~~~~~~ 431 (444)
+|++|++|+..+=..+...+.+
T Consensus 734 ~gilTR~D~~~~~~l~~~~~v~ 755 (762)
T KOG0474|consen 734 VGILTRKDLARYRILGLEPHVD 755 (762)
T ss_pred eEEEehhhhhhHHHhccccccc
Confidence 9999999999665443333333
No 193
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.21 E-value=1.6e-05 Score=80.29 Aligned_cols=121 Identities=15% Similarity=0.174 Sum_probs=94.4
Q ss_pred CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCccc
Q 013373 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282 (444)
Q Consensus 203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~v~ 282 (444)
.++.+++.... ...+...++.+..+++..|...+...++|+|.+ +++.|+++..++.+..... ..+.
T Consensus 274 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----------~~~~ 340 (400)
T PRK10070 274 FSAKDIARRTP-NGLIRKTPGFGPRSALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQQ-----------QGLD 340 (400)
T ss_pred cchhhhhhcCc-ccccccCCCCCHHHHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhcC-----------Cchh
Confidence 34566664210 111234467789999999999999999999987 8999999999997655321 2355
Q ss_pred ccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373 283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 283 ~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
+ .+.. ...++.+++++.+++..|.+.... +||+|+ +|+++|+|+..++++.+..
T Consensus 341 ~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 341 A----ALID-APLAVDAQTPLSELLSHVGQAPCA-VPVVDE-DQQYVGIISKGMLLRALDR 394 (400)
T ss_pred h----hhcc-CCceeCCCCCHHHHHHHHHhCCCc-EEEECC-CCcEEEEEEHHHHHHHHHh
Confidence 5 3444 678999999999999999987766 999998 8999999999999998864
No 194
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.19 E-value=4e-06 Score=85.35 Aligned_cols=135 Identities=16% Similarity=0.281 Sum_probs=105.4
Q ss_pred CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCC----CcEEEEEeHHHHHHHhhcCCCCC----
Q 013373 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT----PDIKNYITQSAVVQGLEGCKGRD---- 271 (444)
Q Consensus 200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~----~~l~Givt~~di~~~l~~~~~~~---- 271 (444)
+++.+++|+|. .|++++..-+.+....+.+.....+.+||+|+.. +++.|+|-.+.++..+......+
T Consensus 579 mr~L~a~ev~~----~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~ 654 (762)
T KOG0474|consen 579 MRNLTAGEVMS----KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRS 654 (762)
T ss_pred hhhhhHhhhcc----CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence 56678999998 7899999999999999999999999999999742 47889999999887765321110
Q ss_pred --cccc--------c--ccCccccccc------------CCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCe
Q 013373 272 --WFDI--------I--ASQPISDLGL------------PFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKK 327 (444)
Q Consensus 272 --~~~~--------~--~~~~v~~l~l------------~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~ 327 (444)
+... + ...+++|+++ ++|++ .+.++.+++++..++.++++-+.+++.|+++ ..+
T Consensus 655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~-sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~-~~~ 732 (762)
T KOG0474|consen 655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNP-SPYTVPETMSLAKAFILFRQLGLRHLLVVPK-TNR 732 (762)
T ss_pred ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCC-CCcccCcccchHHHHHHHHHhcceeEEEecC-CCc
Confidence 0000 0 0123333321 36777 7899999999999999999999999999998 778
Q ss_pred EEEEEeHHHHHHH
Q 013373 328 IVGNVSIRDIRHL 340 (444)
Q Consensus 328 lvGiIt~~Dll~~ 340 (444)
++|++|++|+...
T Consensus 733 ~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 733 VVGILTRKDLARY 745 (762)
T ss_pred eeEEEehhhhhhH
Confidence 8999999999755
No 195
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.93 E-value=2.8e-05 Score=64.13 Aligned_cols=55 Identities=25% Similarity=0.448 Sum_probs=50.1
Q ss_pred CcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013373 353 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 420 (444)
Q Consensus 353 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~ 420 (444)
.++.++|.. ++.++++++++.++++.|.+.+.+.+||+|+++ +++|+||..||.+
T Consensus 58 ~~v~dim~~------------~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~-~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR------------KPVTARPNDPLREALNLMHEHNIRTLPVVDDDG-TPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC------------CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCC-eEEEEEEHHHhhc
Confidence 568899874 788999999999999999999999999999887 9999999999864
No 196
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.87 E-value=4.8e-05 Score=51.19 Aligned_cols=47 Identities=30% Similarity=0.511 Sum_probs=43.1
Q ss_pred CeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013373 375 PITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF 422 (444)
Q Consensus 375 ~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l 422 (444)
+.++.+++++.++++.|.+.+.+.+||+++++ +++|+++..|+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEG-RLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCC-eEEEEEEHHHHHHhh
Confidence 57789999999999999999999999999877 999999999998764
No 197
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.72 E-value=0.0003 Score=72.21 Aligned_cols=127 Identities=18% Similarity=0.269 Sum_probs=86.0
Q ss_pred CceEecCC-CcHHHHHHHHHHcCCCeEeEE-eCCCCeEEEEEeHHHHHHHhcCCccccc-cccCcHHHHhcccCCC----
Q 013373 293 EVITIQSN-ELILEAFKRMKDNNIGGIPVV-EGQQKKIVGNVSIRDIRHLLLKPELFSN-FRQLTVRDFMNAVVPT---- 365 (444)
Q Consensus 293 ~~~~v~~~-~sl~ea~~~m~~~~~~~lpVv-d~~~~~lvGiIt~~Dll~~l~~~~~~~~-~~~~~v~~~m~~~~~~---- 365 (444)
...+++.+ .++.+....|.+..++.+||+ ++++..++|++.++|+...+.+...... ....+. .+.....+.
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~-~f~~~~~~~~~~~ 635 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI-YFNDPSPSAVAGI 635 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc-ccCCCCccccCCC
Confidence 35555555 899999999999999999988 3336789999999999766643111100 000111 111110000
Q ss_pred ---CC-CCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013373 366 ---TP-DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF 422 (444)
Q Consensus 366 ---~~-~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l 422 (444)
.. +....-.++++...++...+++++.+-+.+.+.|.. +| ++.|+||.+|++++.
T Consensus 636 ~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G-~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 636 PSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK-NG-ILLGIITKKDCLRHT 694 (696)
T ss_pred CCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc-CC-eeEeeeehHHHHHhh
Confidence 00 000234789999999999999999999998876654 55 999999999999864
No 198
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.67 E-value=0.00012 Score=60.27 Aligned_cols=55 Identities=24% Similarity=0.459 Sum_probs=49.2
Q ss_pred CcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHH
Q 013373 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339 (444)
Q Consensus 279 ~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~ 339 (444)
.++.+ +|.. ++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+++.+|+.+
T Consensus 58 ~~v~d----im~~-~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRD----VINR-KPVTARPNDPLREALNLMHEHNIRTLPVVDD-DGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHH----hcCC-CCCEECCcCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHhhc
Confidence 56778 6776 7889999999999999999999999999998 789999999999863
No 199
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.62 E-value=0.00056 Score=70.24 Aligned_cols=137 Identities=9% Similarity=0.172 Sum_probs=97.3
Q ss_pred CCCCCCcHHHhhhhcCCC-CceEeeCC-CCHHHHHHHHHhCCCCEEEEe-cCCCCcEEEEEeHHHHHHHhhcCCCCCc--
Q 013373 198 EPFKSTTVRSIIKSYRWA-PFLPVATD-DSMLSVLLLLSKYRLRNVPII-EPGTPDIKNYITQSAVVQGLEGCKGRDW-- 272 (444)
Q Consensus 198 ~~~~~~~v~di~~~~~~~-~~v~v~~~-~sl~~a~~~l~~~~i~~lpVv-d~~~~~l~Givt~~di~~~l~~~~~~~~-- 272 (444)
+++..+-..++|...+.+ ++..+..+ .++.+...+|.+...+..||+ ++++.+++|++.++|+.-.+........
T Consensus 538 ~e~~~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~ 617 (696)
T KOG0475|consen 538 SEFSSTLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFI 617 (696)
T ss_pred cccccchhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccc
Confidence 334433445666644444 46666665 899999999999999888866 5556789999999999766642211100
Q ss_pred ----------ccccc-----cCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHH
Q 013373 273 ----------FDIIA-----SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337 (444)
Q Consensus 273 ----------~~~~~-----~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dl 337 (444)
.+... ....++ +|.. .+.++...++...+++++++-+.+.+.|.. +|++.|+||++|+
T Consensus 618 ~~~~~~f~~~~~~~~~~~~~~~~lk~----il~~-tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~ 690 (696)
T KOG0475|consen 618 VTTSIYFNDPSPSAVAGIPSRLDLKD----ILDM-TPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDC 690 (696)
T ss_pred eecccccCCCCccccCCCCCCcCcee----eccC-CcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHH
Confidence 00000 112233 5655 688999999999999999999999988887 7999999999999
Q ss_pred HHHh
Q 013373 338 RHLL 341 (444)
Q Consensus 338 l~~l 341 (444)
++..
T Consensus 691 l~~~ 694 (696)
T KOG0475|consen 691 LRHT 694 (696)
T ss_pred HHhh
Confidence 8763
No 200
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.51 E-value=0.00038 Score=46.65 Aligned_cols=47 Identities=32% Similarity=0.579 Sum_probs=42.3
Q ss_pred ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHh
Q 013373 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 341 (444)
Q Consensus 294 ~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l 341 (444)
+.++.+++++.++++.|.+++.+.+||+++ +++++|+++..+++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHhh
Confidence 567889999999999999999999999997 68999999999997654
No 201
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.03 E-value=0.0068 Score=60.92 Aligned_cols=145 Identities=11% Similarity=0.082 Sum_probs=91.0
Q ss_pred CCEEEEecCCCCcEEEEEeHHHHHHH-----hhcCCCCCcccccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHH
Q 013373 238 LRNVPIIEPGTPDIKNYITQSAVVQG-----LEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKD 312 (444)
Q Consensus 238 i~~lpVvd~~~~~l~Givt~~di~~~-----l~~~~~~~~~~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~ 312 (444)
..++.++++ |+++..-+..+++.. .... ........-.+..+ +|.+ ...+...+.. .+++.
T Consensus 232 ~DrI~vl~~--G~iv~~g~~~ei~~~p~~~~~~~~--~~~~~~~~~l~a~~----~m~~--~~~~~~~~~~-~~~~~--- 297 (382)
T TIGR03415 232 GNRIAIMEG--GRIIQHGTPEEIVLNPANDYVADF--VAHTNPLNVLTARS----LMRP--LTDLEHVDGG-WCVSD--- 297 (382)
T ss_pred CCEEEEEEC--CEEEEecCHHHHhhCcchHHHHHH--hcccCcccceeHHH----Hhcc--cccccccCcc-hhhhh---
Confidence 356777765 788877777777431 1110 00001112223444 5743 3333222222 44444
Q ss_pred cCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCeEecCCCCHHHHHHHHH
Q 013373 313 NNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLA 392 (444)
Q Consensus 313 ~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~ 392 (444)
++.+.++|+| . |+++..+...+.... ...++.+ +.. ...++++++++.+++..+.
T Consensus 298 ~~~~~~~~~~--~----~~~~~~~~~~~~~~~------~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~~~ 352 (382)
T TIGR03415 298 RRDTWLFTID--K----QVRRRDAKLPVQAWA------AEQEVES-LEA------------APTVINPDTLMRDVLAARH 352 (382)
T ss_pred cccceeEeec--c----ceecccchHhHhhcc------cccchhh-hcc------------cCcccCCCCcHHHHHHHHh
Confidence 7888899998 3 788877765543311 1224555 332 6788999999999999998
Q ss_pred hcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373 393 SKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 393 ~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
.++ .-++|+|+ | +++|+|++.+++..+..
T Consensus 353 ~~~-~~~~v~~~-~-~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 353 RTG-GAILLVEN-G-RIVGVIGDDNIYHALLG 381 (382)
T ss_pred cCC-CCeEEeeC-C-eEEEEEeHHHHHHHHhc
Confidence 877 45889986 6 99999999999998864
No 202
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.93 E-value=0.0017 Score=62.04 Aligned_cols=159 Identities=16% Similarity=0.203 Sum_probs=107.3
Q ss_pred CCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCccccc---ccCcccccccCCCCCCC-ceEec
Q 013373 223 DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII---ASQPISDLGLPFMSSDE-VITIQ 298 (444)
Q Consensus 223 ~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~---~~~~v~~l~l~im~~~~-~~~v~ 298 (444)
+..+.+|+++ -+++.++.+ |+++.+=|+.+|+.--...+-..++..+ .-.+..+ +|...+ ...-.
T Consensus 222 tHDLdEAlri-----G~rIaimkd--G~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~VltA~~----IM~~~~~~~~~~ 290 (386)
T COG4175 222 THDLDEALRI-----GDRIAIMKD--GEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKD----IMRRPDLLIRKT 290 (386)
T ss_pred ecCHHHHHhc-----cceEEEecC--CeEEEeCCHHHHHcCccHHHHHHHHhcCChhheeeHHH----hhcccccccccc
Confidence 3446777733 356777765 8999999999997532221111111111 1223444 565311 12222
Q ss_pred CCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCeEe
Q 013373 299 SNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITC 378 (444)
Q Consensus 299 ~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v 378 (444)
+...-..+++.+.+...+.+.+++. .++.+|+++..++... .+. ..+.++
T Consensus 291 ~~~~~~~al~~~~~~~~~~~~~~~~-~~~~~g~v~~~~~~~~-----------------~~~------------~~~~~v 340 (386)
T COG4175 291 PGDGPRVALKLLRDEGREYGYAVDR-GNKFVGVVSIDSLVKA-----------------ALI------------DDVLTV 340 (386)
T ss_pred cccccchhhhhhhhccchhhHHHhc-cCceeeEEeccchhcc-----------------ccc------------cccccc
Confidence 3334456788888888877888885 7889999998886543 112 267788
Q ss_pred cCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHc
Q 013373 379 KLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 424 (444)
Q Consensus 379 ~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~ 424 (444)
..++++.+.+..+.+.. ..++|||+++ +++|+|++..++.++..
T Consensus 341 ~~d~~~~~~~~~~~~~~-~p~aVvde~~-r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 341 DADTPLSEILARIRQAP-CPVAVVDEDG-RYVGIISRGELLEALAR 384 (386)
T ss_pred CccchHHHHHHHHhcCC-CceeEEcCCC-cEEEEecHHHHHHHHhc
Confidence 99999999998888766 4689999998 99999999999999875
No 203
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.17 E-value=0.049 Score=52.33 Aligned_cols=113 Identities=16% Similarity=0.267 Sum_probs=82.4
Q ss_pred CCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccCc
Q 013373 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP 280 (444)
Q Consensus 201 ~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~~ 280 (444)
+-.++.+||... ...+.-.+...-..++..+.+.....+.+++.. ++.+|+++..+.+..
T Consensus 272 ~VltA~~IM~~~--~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~-~~~~g~v~~~~~~~~----------------- 331 (386)
T COG4175 272 RVLTAKDIMRRP--DLLIRKTPGDGPRVALKLLRDEGREYGYAVDRG-NKFVGVVSIDSLVKA----------------- 331 (386)
T ss_pred heeeHHHhhccc--ccccccccccccchhhhhhhhccchhhHHHhcc-CceeeEEeccchhcc-----------------
Confidence 345677888731 223333344455678888888777777778754 679999988776542
Q ss_pred ccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013373 281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343 (444)
Q Consensus 281 v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~ 343 (444)
. +.. ++.++..++++.+.+..+.+... .++|+|+ +++++|+++...++.++..
T Consensus 332 --~-----~~~-~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde-~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 --A-----LID-DVLTVDADTPLSEILARIRQAPC-PVAVVDE-DGRYVGIISRGELLEALAR 384 (386)
T ss_pred --c-----ccc-cccccCccchHHHHHHHHhcCCC-ceeEEcC-CCcEEEEecHHHHHHHHhc
Confidence 1 222 67888999999999988887665 4889998 8999999999999998763
No 204
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.74 E-value=0.19 Score=50.51 Aligned_cols=110 Identities=19% Similarity=0.157 Sum_probs=72.6
Q ss_pred CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013373 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (444)
Q Consensus 200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~~~ 279 (444)
.+-.++.++|. ........+ .. .+++. ++...+.|+|. |+++..+......... ..
T Consensus 271 ~~~l~a~~~m~----~~~~~~~~~-~~-~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~---------~~ 326 (382)
T TIGR03415 271 LNVLTARSLMR----PLTDLEHVD-GG-WCVSD---RRDTWLFTIDK------QVRRRDAKLPVQAWAA---------EQ 326 (382)
T ss_pred ccceeHHHHhc----ccccccccC-cc-hhhhh---cccceeEeecc------ceecccchHhHhhccc---------cc
Confidence 44457788885 212222222 22 34433 67888999984 6787777655433211 12
Q ss_pred cccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013373 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342 (444)
Q Consensus 280 ~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~ 342 (444)
.+.++ .. .+.++++++++.+++..+.+.+.. ++|+| +|+++|+|+..+++..+.
T Consensus 327 ~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~--~~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 327 EVESL-----EA-APTVINPDTLMRDVLAARHRTGGA-ILLVE--NGRIVGVIGDDNIYHALL 380 (382)
T ss_pred chhhh-----cc-cCcccCCCCcHHHHHHHHhcCCCC-eEEee--CCeEEEEEeHHHHHHHHh
Confidence 23331 22 577889999999999998887754 88888 599999999999998864
No 205
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=93.13 E-value=1.3 Score=47.22 Aligned_cols=86 Identities=20% Similarity=0.148 Sum_probs=59.7
Q ss_pred HHHHHhhhccCCCChHHHH-HHHhhcCCccCCCCCCCCCeEEEeCCCCHHHHHHHHHHCCCccCceecCCCCCCCCcccc
Q 013373 19 YFEAIQSRKKLPHSLQETL-TAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKER 97 (444)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~i~v~~~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~ 97 (444)
.|+.|+-.|+||-=|.=.= +...-.+-|.++ +-.++..|..++|.+|--++|..+.+++.|++|+.+. .-
T Consensus 562 iYDSII~IKklPYLPDlpps~~~~h~v~VE~i---MV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~es------mi 632 (931)
T KOG0476|consen 562 IYDSIIRIKKLPYLPDLPPSRSSVHTVKVEHI---MVTDVKYITKDTTYRELREALQTTTLRSFPLVESKES------MI 632 (931)
T ss_pred hhhheeeeccCCcCCCCCCcccceeEEEeeee---ccccceeeeccCcHHHHHHHHHhCccceeccccCccc------ce
Confidence 4777888887774321100 001112233333 3568889999999999999999888999999998762 45
Q ss_pred eeEEEehhHHHHHHHh
Q 013373 98 YLGIVDYSAIILWVLE 113 (444)
Q Consensus 98 ~~Giv~~~di~~~~l~ 113 (444)
++|.|....+...+-.
T Consensus 633 LlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 633 LLGSVARRYLTALLQR 648 (931)
T ss_pred eeehhHHHHHHHHHHh
Confidence 8999998888776644
No 206
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.49 E-value=0.95 Score=42.51 Aligned_cols=111 Identities=15% Similarity=0.131 Sum_probs=69.7
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcC---------C-ccccccccCcHHHHhccc
Q 013373 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK---------P-ELFSNFRQLTVRDFMNAV 362 (444)
Q Consensus 293 ~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~---------~-~~~~~~~~~~v~~~m~~~ 362 (444)
-++.|+.| +.||+++- .++.|.+ +|+++-+-+..+++..-.+ . ..++.+....+.+.+...
T Consensus 188 TivfVTHD--idEA~kLa-----dri~vm~--~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~ 258 (309)
T COG1125 188 TIVFVTHD--IDEALKLA-----DRIAVMD--AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG 258 (309)
T ss_pred EEEEEecC--HHHHHhhh-----ceEEEec--CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence 35666655 56777553 3578888 6999999997777543221 0 111222333455555421
Q ss_pred CCCCCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373 363 VPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 421 (444)
Q Consensus 363 ~~~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~ 421 (444)
.. ..--.........+++..+...+...+||||++| +++|+||+.+++..
T Consensus 259 ~~--------~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g-~~~G~vt~~~l~~~ 308 (309)
T COG1125 259 EP--------ADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDG-RPLGTVTRADLLDE 308 (309)
T ss_pred cc--------ccCCccccchhhHHHHHHHHhcCCceeEEECCCC-cEeeEEEHHHHhhh
Confidence 10 0011123334445588888888999999999998 99999999999875
No 207
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.37 E-value=1.8 Score=40.65 Aligned_cols=107 Identities=15% Similarity=0.219 Sum_probs=67.0
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHH-----HhhcCCC--CCcccccccCcccccccCCCCCCC-
Q 013373 222 TDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ-----GLEGCKG--RDWFDIIASQPISDLGLPFMSSDE- 293 (444)
Q Consensus 222 ~~~sl~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~-----~l~~~~~--~~~~~~~~~~~v~~l~l~im~~~~- 293 (444)
-+..+.+|+++- .++.|++. |+++.+-++.+|+. |+....+ ...+..+....+.+ .|....
T Consensus 192 VTHDidEA~kLa-----dri~vm~~--G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~----~~~~~~~ 260 (309)
T COG1125 192 VTHDIDEALKLA-----DRIAVMDA--GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVAD----AVRRGEP 260 (309)
T ss_pred EecCHHHHHhhh-----ceEEEecC--CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHH----hhccccc
Confidence 345568888553 67888985 89999999877754 1111111 12222233334444 222111
Q ss_pred --ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHH
Q 013373 294 --VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL 340 (444)
Q Consensus 294 --~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~ 340 (444)
--.+.......+++..+...+...+||+|+ +|+++|.+|..+++..
T Consensus 261 ~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~-~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 261 ADGEPLLEGFVDRDALSDFLARGRSVLPVVDE-DGRPLGTVTRADLLDE 308 (309)
T ss_pred ccCCccccchhhHHHHHHHHhcCCceeEEECC-CCcEeeEEEHHHHhhh
Confidence 112233344456787888899999999999 9999999999998754
No 208
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=90.85 E-value=1.1 Score=47.83 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=51.8
Q ss_pred CcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCEEEEecCC-CCcEEEEEeHHHHHHHhhcC
Q 013373 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGC 267 (444)
Q Consensus 203 ~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~lpVvd~~-~~~l~Givt~~di~~~l~~~ 267 (444)
..|+++|. .++..+..+.|..+..+.+....++.+|++|+. +.-++|.|.++.+..++..+
T Consensus 588 v~VE~iMV----~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ 649 (931)
T KOG0476|consen 588 VKVEHIMV----TDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRH 649 (931)
T ss_pred EEeeeecc----ccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhh
Confidence 46788888 789999999999999999877669999999864 44589999999999888664
No 209
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=87.44 E-value=0.87 Score=47.43 Aligned_cols=123 Identities=19% Similarity=0.236 Sum_probs=84.2
Q ss_pred CCCC-CCceEecCCCcHH-HHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCC
Q 013373 288 FMSS-DEVITIQSNELIL-EAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPT 365 (444)
Q Consensus 288 im~~-~~~~~v~~~~sl~-ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~ 365 (444)
+|++ +++.....+..+. +........+++++||.+......+|.+=....+.+..... .+...++.+++..
T Consensus 209 vmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~---~~~~~~v~~~~~~---- 281 (498)
T KOG2118|consen 209 VMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEV---PLEPLPVSESALL---- 281 (498)
T ss_pred hccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhcccc---ccccccchhhhcc----
Confidence 5654 3455666666665 55666778999999999864344444432333333332111 3446677888764
Q ss_pred CCCCCCCCCCeEecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCc
Q 013373 366 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPN 428 (444)
Q Consensus 366 ~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~ 428 (444)
....++.++++.+.++.+.+.+.|.+.|.+. . .-+++++..|+ .....|..+
T Consensus 282 --------~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~-~-~~~~~~~l~~~-~~~~~ev~d 333 (498)
T KOG2118|consen 282 --------RLPLVPENMPLLDLLNEFQKGKSHMAVVRNG-H-VDIFVLTLEDL-EEVVKEVED 333 (498)
T ss_pred --------ccccCCCcccHHHHHHHHhhhhceeEEEecC-C-cceeeEeccch-hhhcceecc
Confidence 7788999999999999999999888888774 3 68999999998 665554443
No 210
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=76.48 E-value=3.9 Score=42.69 Aligned_cols=128 Identities=9% Similarity=0.086 Sum_probs=84.5
Q ss_pred hccCCCCCCcHHHhhhhcCCCCceEeeCCCCHH-HHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhcCCCCCcc
Q 013373 195 LQEEPFKSTTVRSIIKSYRWAPFLPVATDDSML-SVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF 273 (444)
Q Consensus 195 ~~~~~~~~~~v~di~~~~~~~~~v~v~~~~sl~-~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~~~~~~~~ 273 (444)
.....+....++++|... ..+..+..+..+. +......+.+++++||.+.+....+|.+=....++++....
T Consensus 196 ~g~l~l~ek~~~evmtpi--~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~----- 268 (498)
T KOG2118|consen 196 TGALELTEKLVGEVMTPI--EDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEV----- 268 (498)
T ss_pred hhhHHHHHHHHHHhccch--hhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhcccc-----
Confidence 333445556788999844 6678888888886 55556678999999999875323333322233333332110
Q ss_pred cccccCcccccccCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHH
Q 013373 274 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337 (444)
Q Consensus 274 ~~~~~~~v~~l~l~im~~~~~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dl 337 (444)
.+...++.. .+.. ....++.++++.+.++.+...+.+.+.|.+ ...-+++++..|+
T Consensus 269 -~~~~~~v~~----~~~~-~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~--~~~~~~~~~l~~~ 324 (498)
T KOG2118|consen 269 -PLEPLPVSE----SALL-RLPLVPENMPLLDLLNEFQKGKSHMAVVRN--GHVDIFVLTLEDL 324 (498)
T ss_pred -ccccccchh----hhcc-ccccCCCcccHHHHHHHHhhhhceeEEEec--CCcceeeEeccch
Confidence 224456666 3443 678888999999999999977777666665 4567788888887
No 211
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=36.31 E-value=70 Score=24.13 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=20.7
Q ss_pred CCEEEEEeCCCCeEEEEEeHHHHHHHhH
Q 013373 396 VHRIYVVAGEEAEVVGVITLRDVISCFI 423 (444)
Q Consensus 396 ~~~l~VVd~~~~~lvGvIT~~DIl~~l~ 423 (444)
...+-|||++| +.+|+++.++-++..-
T Consensus 12 ~~~VrlI~~~g-~~lGv~~~~eAl~~A~ 38 (76)
T PF05198_consen 12 APEVRLIDEDG-EQLGVMSLREALRLAK 38 (76)
T ss_dssp -SEEEEE-TTS--EEEEEEHHHHHHHHH
T ss_pred CCEEEEECCCC-cEeceEEHHHHHHHHH
Confidence 46788999998 9999999999998653
No 212
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=34.65 E-value=1.2e+02 Score=32.83 Aligned_cols=97 Identities=11% Similarity=0.132 Sum_probs=56.5
Q ss_pred HHHHHHHHhCCCCEEEEecCCCCcEEEEEeHHHHHHHhhc-C--CCCCcccccccCcccccccC-CCCCCCceEecCCCc
Q 013373 227 LSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG-C--KGRDWFDIIASQPISDLGLP-FMSSDEVITIQSNEL 302 (444)
Q Consensus 227 ~~a~~~l~~~~i~~lpVvd~~~~~l~Givt~~di~~~l~~-~--~~~~~~~~~~~~~v~~l~l~-im~~~~~~~v~~~~s 302 (444)
.+....|...+ ..+.+.|.+ |.++.+....++...+.. + .+..|.+. .+..-+++ .+....++.|...+-
T Consensus 62 ~~l~~~l~~~~-~~~~l~D~~-G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~----~~GTnaig~al~~~~pv~v~g~EH 135 (638)
T PRK11388 62 EDAWEYMADRE-CALLILDET-GCILSRNGDPQTLQQLSALGFNDGTYCAEG----IIGTNALSLAAISGQPVKTMGDQH 135 (638)
T ss_pred HHHHHHhcCCC-cEEEEEcCC-ceEEEEeCCHHHHHHHHHcCCccCCccchh----ccCcCHHHHHHhcCCceEEecHHH
Confidence 34444554444 778889987 999999998888766543 1 11222221 11111100 111124555555543
Q ss_pred HHHHHHHHHHcCCCeEeEEeCCCCeEEEEEe
Q 013373 303 ILEAFKRMKDNNIGGIPVVEGQQKKIVGNVS 333 (444)
Q Consensus 303 l~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt 333 (444)
.. +.+..-...+.||.|. +|+++|+++
T Consensus 136 ~~---~~~~~~~c~aaPI~d~-~G~liGvl~ 162 (638)
T PRK11388 136 FK---QALHNWAFCATPVFDS-KGRLTGTIA 162 (638)
T ss_pred HH---HhccCceEEeeEEEcC-CCCEEEEEE
Confidence 33 3344455788999998 899999996
No 213
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=32.33 E-value=1.3e+02 Score=32.52 Aligned_cols=94 Identities=11% Similarity=0.111 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccc--ccccc-----CcHHHHhcccCCCCCCCCCCCCCe
Q 013373 304 LEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF--SNFRQ-----LTVRDFMNAVVPTTPDSGKVNPPI 376 (444)
Q Consensus 304 ~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~--~~~~~-----~~v~~~m~~~~~~~~~~~~~~~~~ 376 (444)
....+.+...+ ..++++|. +|.++.+....+++..+...... ..+.+ --+.-.+.. ..++
T Consensus 62 ~~l~~~l~~~~-~~~~l~D~-~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~~-----------~~pv 128 (638)
T PRK11388 62 EDAWEYMADRE-CALLILDE-TGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAIS-----------GQPV 128 (638)
T ss_pred HHHHHHhcCCC-cEEEEEcC-CceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHhc-----------CCce
Confidence 34444555445 67788888 89999999988887665431110 00111 112222221 3566
Q ss_pred EecCCCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEe
Q 013373 377 TCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT 414 (444)
Q Consensus 377 ~v~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT 414 (444)
.|....-..+.+. .......||.|.+| +++|+|+
T Consensus 129 ~v~g~EH~~~~~~---~~~c~aaPI~d~~G-~liGvl~ 162 (638)
T PRK11388 129 KTMGDQHFKQALH---NWAFCATPVFDSKG-RLTGTIA 162 (638)
T ss_pred EEecHHHHHHhcc---CceEEeeEEEcCCC-CEEEEEE
Confidence 6666665555444 34456899999987 9999996
No 214
>PRK10026 arsenate reductase; Provisional
Probab=28.53 E-value=3.7e+02 Score=22.89 Aligned_cols=116 Identities=9% Similarity=0.039 Sum_probs=70.1
Q ss_pred ceEecCCCcHHHHHHHHHHcCCCeEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCC
Q 013373 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVN 373 (444)
Q Consensus 294 ~~~v~~~~sl~ea~~~m~~~~~~~lpVvd~~~~~lvGiIt~~Dll~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~ 373 (444)
+.....-.+...|++.+.++++.. -+.|- .---.|..+|..++.. ....+.+++++....-.
T Consensus 6 iY~~p~Cst~RKA~~wL~~~gi~~-~~~d~----~~~ppt~~eL~~~l~~-------~g~~~~~lint~~~~yr------ 67 (141)
T PRK10026 6 IYHNPACGTSRNTLEMIRNSGTEP-TIIHY----LETPPTRDELVKLIAD-------MGISVRALLRKNVEPYE------ 67 (141)
T ss_pred EEeCCCCHHHHHHHHHHHHCCCCc-EEEee----eCCCcCHHHHHHHHHh-------CCCCHHHHHHcCCchHH------
Confidence 445556678899999999998764 23331 1123688888888763 13356777775221111
Q ss_pred CCeEecCCCCHHHHHHHHHhcC--CCEEEEEeCCCCeEEEEEeHHHHHHHhHcCCCcc
Q 013373 374 PPITCKLESTLGSVIHSLASKS--VHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNH 429 (444)
Q Consensus 374 ~~~~v~~~~tl~~a~~~m~~~~--~~~l~VVd~~~~~lvGvIT~~DIl~~l~~e~~~~ 429 (444)
..-.-..+.+..++++.|.++. +.|=.|+++++ .++|- ....|+..+-+.+.+.
T Consensus 68 ~L~~~~~~ls~~e~l~ll~~~P~LIKRPIi~~~~~-a~i~R-p~e~v~~~l~~~~~~~ 123 (141)
T PRK10026 68 ELGLAEDKFTDDQLIDFMLQHPILINRPIVVTPLG-TRLCR-PSEVVLEILPDAQKGA 123 (141)
T ss_pred HcCCCccCCCHHHHHHHHHhCccceeCcEEEcCCC-eEEEC-CHHHHHHHhccccccc
Confidence 1111113578899999999975 45545566665 78887 5555555553444443
No 215
>PF11112 PyocinActivator: Pyocin activator protein PrtN
Probab=27.34 E-value=2.2e+02 Score=21.48 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHCCCccCceecCCCCCCCCcccceeEEEehhHHHHHHHhhhh
Q 013373 63 DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAE 116 (444)
Q Consensus 63 ~~si~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~~Giv~~~di~~~~l~~~~ 116 (444)
+.+...|.+....+.+ .+||+.-+++ .|---+|.+.|+..|+=+..+
T Consensus 27 ~lt~~~a~rk~~~g~l-plPv~rl~~S------qKs~~~V~v~dLA~yiD~~~~ 73 (76)
T PF11112_consen 27 HLTPKTAKRKANAGEL-PLPVFRLDDS------QKSPKFVHVQDLAAYIDKRRE 73 (76)
T ss_pred cCCHHHHHHHHHCCCC-CCceeecCCc------ccCCceeeHHHHHHHHHHHHH
Confidence 4566777777777777 8999997653 355558999999999855443
No 216
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=26.03 E-value=60 Score=25.08 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=24.9
Q ss_pred CCCCCCCCeEEEeCCCCHHHHHHHHHHCCC
Q 013373 49 FPNVPGGRVIEIMADTTIPDAVKILSECNI 78 (444)
Q Consensus 49 ~~~~~~~~~i~v~~~~si~~A~~~l~~~~i 78 (444)
+....+.+.+.|++.+|.++++++|.+++-
T Consensus 8 ~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h 37 (85)
T cd01787 8 YSEDGASKSLEVDERMTARDVCQLLVDKNH 37 (85)
T ss_pred EecCCCeeEEEEcCCCcHHHHHHHHHHHhC
Confidence 344467899999999999999999998654
No 217
>smart00594 UAS UAS domain.
Probab=23.39 E-value=92 Score=25.52 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=38.0
Q ss_pred CCCCcHHHhhhhcCCCCceEeeCCCCHHHHHHHHHhCCCCE---EEEecCCCC--------cEEEEEeHHHHHHHh
Q 013373 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN---VPIIEPGTP--------DIKNYITQSAVVQGL 264 (444)
Q Consensus 200 ~~~~~v~di~~~~~~~~~v~v~~~~sl~~a~~~l~~~~i~~---lpVvd~~~~--------~l~Givt~~di~~~l 264 (444)
+.+..|.+.+. +.++....+.+-.++..++...+++. +.+++...| ++-|.++..+++..|
T Consensus 50 l~~~~V~~~i~----~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 50 LCNEAVKSLIR----ENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred ccCHHHHHHHH----cCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 55666888877 45777666655566666666666655 447776521 345666666666544
No 218
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=20.82 E-value=1.3e+02 Score=31.43 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013373 381 ESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 421 (444)
Q Consensus 381 ~~tl~~a~~~m~~~~~~~l~VVd~~~~~lvGvIT~~DIl~~ 421 (444)
...+..+.+...+.+-.-++|+.+ ++++|+|-+.|+++-
T Consensus 412 p~~l~~~~~~vs~~GGTPL~V~~~--~~~~GVI~LkDivK~ 450 (681)
T COG2216 412 PEDLDAAVDEVSRLGGTPLVVVEN--GRILGVIYLKDIVKP 450 (681)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEC--CEEEEEEEehhhcch
Confidence 345778888888888888988875 599999999999874
No 219
>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases []. This type of polymerases are thought to be involved in UV protection and mutation [, ]. ; PDB: 3PZP_B 2OH2_B 2W7O_B 3IN5_B 1T94_A 2W7P_B 2W8K_A 2AGQ_A 1RYR_A 3RAX_A ....
Probab=20.50 E-value=91 Score=19.07 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=14.9
Q ss_pred HHHHHHhhcCCccCCCCC
Q 013373 35 ETLTAAFARIPVLSFPNV 52 (444)
Q Consensus 35 ~~~~~~~~~~~v~~~~~~ 52 (444)
|.+.+|++.+||++|+++
T Consensus 2 e~v~~~l~~lpi~~~~GI 19 (32)
T PF11798_consen 2 EDVPEFLWPLPIRKFWGI 19 (32)
T ss_dssp HHHHHHHHCSBGGGSTTS
T ss_pred hHHHHHHhcCCHHhhCCc
Confidence 456789999999999875
Done!