BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013375
(444 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86TV6|TTC7B_HUMAN Tetratricopeptide repeat protein 7B OS=Homo sapiens GN=TTC7B PE=1
SV=3
Length = 843
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 126/282 (44%), Gaps = 22/282 (7%)
Query: 132 FVPRNNIEEAILLLMI----LLRKVALKRIEWDPS-----------ILDHLSFAFSIAGD 176
F P+ N EEA+LLL+I R L RI S + D L+ A G
Sbjct: 319 FCPQENTEEALLLLLISESMANRDAVLSRIPEHKSDRLISLQSASVVYDLLTIALGRRGQ 378
Query: 177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236
L+ +E + ++ AL AG+ A+ +L+ + D +P L+
Sbjct: 379 YEMLSECLERAMKFAFEEFHLWYQFALSLMAAGKSARAVKVLKECIRLKPDDATIP--LL 436
Query: 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296
A+K+C EE FA ++ +G+ + ++ LG++ S Q+ A +
Sbjct: 437 AAKLCMGSLHWLEEAEKFAKTVVD-VGEKTSEFKAKGYLALGLTYSLQATDASLRGMQEV 495
Query: 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL 356
Q KAL A A S + D + L+L+ A R++ A Y + L+L+G +
Sbjct: 496 LQRKALLAF-QRAHSLSPTDHQAAFYLALQLAISRQIPEALGYVRQALQLQG-DDANSLH 553
Query: 357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398
L+A +LSAQK Y DA I++ AL + E LL +K K+Q
Sbjct: 554 LLALLLSAQKHYHDALNIIDMALSEYP--ENFILLFSKVKLQ 593
>sp|Q9ULT0|TTC7A_HUMAN Tetratricopeptide repeat protein 7A OS=Homo sapiens GN=TTC7A PE=1
SV=3
Length = 858
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 130/293 (44%), Gaps = 25/293 (8%)
Query: 132 FVPRNNIEEAILLLMI----LLRKVALKRI---EWD--------PSILDHLSFAFSIAGD 176
+ P++NIEEA+LLL+I R V L R+ E D +I D LS G
Sbjct: 336 YCPKDNIEEALLLLLISESMATRDVVLSRVPEQEEDRTVSLQNAAAIYDLLSITLGRRGQ 395
Query: 177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236
L+ +E + ++ +AL G+ A++LLR + +P L+
Sbjct: 396 YVMLSECLERAMKFAFGEFHLWYQVALSMVACGKSAYAVSLLRECVKLRPSDPTVP--LM 453
Query: 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296
A+K+C EE FA + LG+ + LG++ S Q+ A +
Sbjct: 454 AAKVCIGSLRWLEEAEHFAMMVI-SLGEEAGEFLPKGYLALGLTYSLQATDATLKSKQDE 512
Query: 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL 356
KALQ L A + ILY +SL+ A R++++A + LK+ +
Sbjct: 513 LHRKALQTLERAQQLAPSDPQVILY-VSLQLALVRQISSAMEQLQEALKVR-KDDAHALH 570
Query: 357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVE 409
L+A + SAQK ++ A ++N A+ T E L+ TK K++ V LKG E
Sbjct: 571 LLALLFSAQKHHQHALDVVNMAI--TEHPENFNLMFTKVKLEQV---LKGPEE 618
>sp|Q8BGB2|TTC7A_MOUSE Tetratricopeptide repeat protein 7A OS=Mus musculus GN=Ttc7a PE=1
SV=1
Length = 858
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 130/293 (44%), Gaps = 25/293 (8%)
Query: 132 FVPRNNIEEAILLLMI----LLRKVALKR-----------IEWDPSILDHLSFAFSIAGD 176
+ P++NIEEA+LLL+I R V L R ++ +I D LS G
Sbjct: 337 YCPKDNIEEALLLLLISESMATRDVVLSRAPEQAEDRKVSLQNASAIYDLLSITLGRRGQ 396
Query: 177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236
L+ +E + ++ +AL G+ A++LLR + +P L+
Sbjct: 397 YVMLSECLERAMKCAFGEFHLWYQVALSMVACGKSAYAVSLLRECMKLQPSDPTVP--LM 454
Query: 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296
A+K+C EE FA+ + LG+ + LG++ S Q+ A +
Sbjct: 455 AAKVCIGSLHWLEEAEHFATVVI-GLGEEAGESLPKGYLALGLTYSLQATDATLKSKQDE 513
Query: 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL 356
KALQ L AR D I++ ++L+ A R++++A + L + +
Sbjct: 514 LHRKALQTL-ERARELAPDDPQIIFYVALQLALVRQISSAMERLQEALTM-CRDDANALH 571
Query: 357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVE 409
L+A + SAQK Y+ A ++N A+ T E L+ TK K++ V LKG E
Sbjct: 572 LLALLFSAQKYYQHALDVINMAI--TEHPENFNLMFTKVKLEQV---LKGPEE 619
>sp|P34231|YKS7_YEAST Uncharacterized protein YKL187C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YKL187C PE=1 SV=1
Length = 750
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQAL 305
DL E+ T +S A + ME++ N + ++ S QS A+T+ ++T+Q L +
Sbjct: 307 DLLEQNLTQSSSAKKAFAALTQLMENSDNSTMVVT-SVQSLAAVTNTTQSTQQLIGLDDV 365
Query: 306 VSAARSTNMRDLSILYRL 323
+S++ +TN LSIL L
Sbjct: 366 ISSSSNTN-ETLSILSEL 382
>sp|A2Z9W7|MRS2G_ORYSI Putative magnesium transporter MRS2-G OS=Oryza sativa subsp. indica
GN=MRS2-G PE=3 SV=2
Length = 468
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 26/147 (17%)
Query: 294 RATRQAKALQALVSAARS-------TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLL-- 344
R Q + ++AL+S+A S T++ L+ +R S+ A L+ +MLL
Sbjct: 301 RKQLQNQQVEALISSAASNSIVPGGTSLSRLNNSFRRSVSIATSMHLDNDVEDLEMLLEA 360
Query: 345 ---KLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ 401
+L+G N RILS ++ +D E +N LD ++ EL+ + ++ L
Sbjct: 361 YFMQLDGIRN--------RILSVREYIDDTEDYVNIQLDN----QRNELI--QLQLTLTI 406
Query: 402 GQLKGAVETYTHLLAALQVQTKTFSSD 428
AV T+ A+ +Q+K +S D
Sbjct: 407 ASFGIAVNTFIAGAFAMNIQSKLYSID 433
>sp|A3BV82|MRS2G_ORYSJ Putative magnesium transporter MRS2-G OS=Oryza sativa subsp.
japonica GN=MRS2-G PE=1 SV=2
Length = 468
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 26/147 (17%)
Query: 294 RATRQAKALQALVSAARS-------TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLL-- 344
R Q + ++AL+S+A S T++ L+ +R S+ A L+ +MLL
Sbjct: 301 RKQLQNQQVEALISSAASNSIVPGGTSLSRLNNSFRRSVSIATSMHLDNDVEDLEMLLEA 360
Query: 345 ---KLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ 401
+L+G N RILS ++ +D E +N LD ++ EL+ + ++ L
Sbjct: 361 YFMQLDGIRN--------RILSVREYIDDTEDYVNIQLDN----QRNELI--QLQLTLTI 406
Query: 402 GQLKGAVETYTHLLAALQVQTKTFSSD 428
AV T+ A+ +Q+K +S D
Sbjct: 407 ASFGIAVNTFIAGAFAMNIQSKLYSID 433
>sp|Q7V1T1|ILVD_PROMP Dihydroxy-acid dehydratase OS=Prochlorococcus marinus subsp.
pastoris (strain CCMP1986 / MED4) GN=ilvD PE=3 SV=1
Length = 559
Score = 32.0 bits (71), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 28/152 (18%)
Query: 188 LPGIINRKERYHILALCYYGA--------GEDLV---ALNLLRTLLSGSEDPKCLPALLI 236
+PG + R +I ++ YG GEDL A + L SG + K L+
Sbjct: 126 MPGAMIAIARMNIPSIFIYGGTIKPGKLNGEDLTVVSAFEAVGQLTSGKINEK---RLIE 182
Query: 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296
K C P G F + + + + +LG+SL S +A D+++
Sbjct: 183 VEKNC--IPGAGSCGGMFTANTMSAVIE-----------VLGLSLPYSSTMAAEDYEKEV 229
Query: 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYA 328
K+ + LV A R ++R L+++ + S E A
Sbjct: 230 SAEKSAEILVDAIRK-DIRPLTLMTKESFENA 260
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,052,473
Number of Sequences: 539616
Number of extensions: 5516659
Number of successful extensions: 12789
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 12784
Number of HSP's gapped (non-prelim): 13
length of query: 444
length of database: 191,569,459
effective HSP length: 121
effective length of query: 323
effective length of database: 126,275,923
effective search space: 40787123129
effective search space used: 40787123129
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)