Query 013375
Match_columns 444
No_of_seqs 285 out of 2078
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 09:24:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-38 4.8E-43 315.3 34.7 340 12-423 35-374 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 4.6E-38 1.6E-42 311.6 31.1 336 15-422 4-339 (388)
3 2gw1_A Mitochondrial precursor 100.0 1.8E-34 6.3E-39 294.6 30.9 268 134-425 201-486 (514)
4 3fp2_A TPR repeat-containing p 100.0 1.3E-34 4.6E-39 297.9 30.0 371 3-425 18-499 (537)
5 2y4t_A DNAJ homolog subfamily 100.0 1.3E-33 4.4E-38 284.2 32.6 343 9-423 25-416 (450)
6 3ieg_A DNAJ homolog subfamily 100.0 7.3E-33 2.5E-37 268.7 36.6 332 10-402 3-354 (359)
7 4g1t_A Interferon-induced prot 100.0 1.5E-33 5.2E-38 285.9 31.1 372 10-425 51-467 (472)
8 2xpi_A Anaphase-promoting comp 100.0 1E-32 3.4E-37 288.0 34.8 355 9-424 199-586 (597)
9 2y4t_A DNAJ homolog subfamily 100.0 8.6E-32 2.9E-36 270.9 33.7 311 62-424 25-365 (450)
10 2xpi_A Anaphase-promoting comp 100.0 1.1E-31 3.8E-36 280.1 31.3 327 63-423 200-551 (597)
11 1fch_A Peroxisomal targeting s 100.0 3.6E-32 1.2E-36 266.1 24.0 310 65-421 27-363 (368)
12 3hym_B Cell division cycle pro 100.0 7.8E-31 2.7E-35 251.9 30.1 289 65-406 24-323 (330)
13 3hym_B Cell division cycle pro 100.0 2E-30 6.7E-35 249.1 27.7 266 131-424 31-306 (330)
14 3ieg_A DNAJ homolog subfamily 100.0 7.4E-29 2.5E-33 240.4 38.9 304 10-367 37-355 (359)
15 2gw1_A Mitochondrial precursor 100.0 2.1E-29 7.2E-34 257.1 35.7 239 128-395 243-490 (514)
16 2h6f_A Protein farnesyltransfe 100.0 3.3E-31 1.1E-35 262.7 19.3 246 154-423 90-354 (382)
17 3cv0_A Peroxisome targeting si 100.0 1E-29 3.5E-34 243.8 25.4 267 130-423 29-321 (327)
18 4eqf_A PEX5-related protein; a 100.0 2.2E-30 7.4E-35 254.0 19.4 263 131-417 74-356 (365)
19 3fp2_A TPR repeat-containing p 100.0 1.2E-28 4E-33 253.5 33.0 308 62-424 24-414 (537)
20 4g1t_A Interferon-induced prot 100.0 3.4E-29 1.1E-33 253.9 28.2 352 16-423 15-407 (472)
21 2pl2_A Hypothetical conserved 100.0 1.7E-29 5.7E-34 230.9 23.3 211 158-415 2-212 (217)
22 4eqf_A PEX5-related protein; a 100.0 1.5E-29 5.2E-34 248.0 24.6 246 160-423 64-316 (365)
23 1fch_A Peroxisomal targeting s 100.0 3.1E-29 1.1E-33 245.2 26.3 264 135-422 38-319 (368)
24 2h6f_A Protein farnesyltransfe 100.0 1.4E-29 4.8E-34 251.0 23.7 225 154-401 124-366 (382)
25 3uq3_A Heat shock protein STI1 100.0 3.8E-27 1.3E-31 218.0 24.2 231 160-422 4-241 (258)
26 3u4t_A TPR repeat-containing p 100.0 2.3E-27 7.7E-32 222.2 22.6 242 160-425 2-258 (272)
27 3cv0_A Peroxisome targeting si 100.0 7.5E-27 2.6E-31 223.8 26.6 239 160-421 20-273 (327)
28 3mkr_A Coatomer subunit epsilo 100.0 5.8E-26 2E-30 217.0 31.7 277 73-411 9-288 (291)
29 3u4t_A TPR repeat-containing p 99.9 2.3E-26 7.9E-31 215.3 19.3 243 131-402 12-269 (272)
30 3uq3_A Heat shock protein STI1 99.9 5.8E-26 2E-30 210.0 21.6 208 159-397 36-256 (258)
31 2pl2_A Hypothetical conserved 99.9 4.9E-26 1.7E-30 207.7 20.1 168 155-378 33-211 (217)
32 2xm6_A Protein corresponding t 99.9 2.3E-23 7.8E-28 213.2 42.1 345 10-418 39-433 (490)
33 2ooe_A Cleavage stimulation fa 99.9 1.3E-23 4.5E-28 217.1 40.3 378 10-441 13-518 (530)
34 3mkr_A Coatomer subunit epsilo 99.9 2.5E-25 8.4E-30 212.6 24.5 257 135-425 12-272 (291)
35 2xm6_A Protein corresponding t 99.9 3.1E-23 1E-27 212.2 41.6 310 64-417 40-396 (490)
36 3sf4_A G-protein-signaling mod 99.9 2.7E-26 9.2E-31 226.7 16.3 315 10-412 9-371 (406)
37 3vtx_A MAMA; tetratricopeptide 99.9 4.6E-25 1.6E-29 194.8 20.3 174 158-388 2-175 (184)
38 2q7f_A YRRB protein; TPR, prot 99.9 3.7E-25 1.3E-29 203.1 20.3 220 160-402 22-241 (243)
39 1xnf_A Lipoprotein NLPI; TPR, 99.9 4E-25 1.4E-29 206.8 19.8 250 130-411 13-269 (275)
40 4abn_A Tetratricopeptide repea 99.9 5.8E-25 2E-29 224.5 22.6 222 138-414 84-318 (474)
41 4a1s_A PINS, partner of inscut 99.9 6.9E-26 2.4E-30 225.1 15.2 291 63-428 48-383 (411)
42 3sf4_A G-protein-signaling mod 99.9 3.9E-25 1.3E-29 218.3 19.0 283 64-421 10-340 (406)
43 3ro2_A PINS homolog, G-protein 99.9 5.5E-25 1.9E-29 210.4 17.6 282 65-421 7-336 (338)
44 1ouv_A Conserved hypothetical 99.9 1.7E-23 5.8E-28 196.8 27.3 239 157-425 2-259 (273)
45 3vtx_A MAMA; tetratricopeptide 99.9 5.6E-24 1.9E-28 187.8 22.2 174 193-423 3-176 (184)
46 2vq2_A PILW, putative fimbrial 99.9 1.2E-23 4E-28 190.3 24.7 218 156-394 3-222 (225)
47 2ho1_A Type 4 fimbrial biogene 99.9 8.1E-24 2.8E-28 195.8 22.0 216 156-392 31-247 (252)
48 4gyw_A UDP-N-acetylglucosamine 99.9 3.5E-24 1.2E-28 228.2 21.7 176 191-423 5-180 (723)
49 2q7f_A YRRB protein; TPR, prot 99.9 1.2E-23 4.1E-28 193.0 21.4 208 194-424 22-229 (243)
50 2ho1_A Type 4 fimbrial biogene 99.9 2.9E-23 9.8E-28 192.1 24.0 213 189-424 30-245 (252)
51 2ond_A Cleavage stimulation fa 99.9 4E-23 1.4E-27 198.5 25.8 216 152-422 41-275 (308)
52 4a1s_A PINS, partner of inscut 99.9 3.4E-24 1.2E-28 212.9 18.4 288 8-383 46-374 (411)
53 3ro2_A PINS homolog, G-protein 99.9 4E-24 1.4E-28 204.4 17.6 287 9-383 4-334 (338)
54 4gyw_A UDP-N-acetylglucosamine 99.9 2.8E-24 9.7E-29 228.8 17.3 173 156-383 4-176 (723)
55 4i17_A Hypothetical protein; T 99.9 3E-23 1E-27 189.8 20.0 217 158-399 4-225 (228)
56 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.8E-24 2E-28 198.8 13.6 233 168-423 12-250 (275)
57 2ond_A Cleavage stimulation fa 99.9 2.2E-22 7.5E-27 193.4 24.5 187 139-383 81-272 (308)
58 2vq2_A PILW, putative fimbrial 99.9 4.1E-22 1.4E-26 180.1 24.7 214 190-424 3-218 (225)
59 1ouv_A Conserved hypothetical 99.9 1.4E-21 4.6E-26 183.7 27.8 206 158-391 35-259 (273)
60 4abn_A Tetratricopeptide repea 99.9 3.5E-22 1.2E-26 203.9 24.5 226 75-378 80-318 (474)
61 3ulq_A Response regulator aspa 99.9 5.6E-23 1.9E-27 203.2 18.0 242 163-423 105-374 (383)
62 3nf1_A KLC 1, kinesin light ch 99.9 2.8E-23 9.5E-28 197.4 13.2 246 156-420 22-310 (311)
63 3e4b_A ALGK; tetratricopeptide 99.9 4.9E-22 1.7E-26 201.5 22.9 226 158-417 138-387 (452)
64 2ooe_A Cleavage stimulation fa 99.9 4.3E-20 1.5E-24 190.7 35.8 161 250-422 256-425 (530)
65 3qky_A Outer membrane assembly 99.9 1.1E-21 3.8E-26 183.3 21.5 208 155-407 9-251 (261)
66 2pzi_A Probable serine/threoni 99.9 1E-22 3.6E-27 216.8 15.9 188 155-367 388-583 (681)
67 4i17_A Hypothetical protein; T 99.9 1E-21 3.4E-26 179.6 19.1 205 191-425 3-217 (228)
68 3e4b_A ALGK; tetratricopeptide 99.9 1.5E-21 5.1E-26 198.0 21.3 366 14-420 7-424 (452)
69 3dra_A Protein farnesyltransfe 99.9 5E-21 1.7E-25 183.0 22.6 227 175-423 47-294 (306)
70 3urz_A Uncharacterized protein 99.9 1.1E-21 3.7E-26 177.6 14.1 179 160-397 3-199 (208)
71 3q15_A PSP28, response regulat 99.9 1E-20 3.4E-25 186.8 21.4 242 163-423 103-371 (378)
72 3qky_A Outer membrane assembly 99.9 8.8E-21 3E-25 177.2 19.4 205 126-372 19-252 (261)
73 3dra_A Protein farnesyltransfe 99.9 3.2E-20 1.1E-24 177.4 23.4 238 138-397 49-302 (306)
74 1hz4_A MALT regulatory protein 99.9 2E-19 7E-24 176.5 26.6 284 63-420 14-325 (373)
75 3nf1_A KLC 1, kinesin light ch 99.8 2.3E-21 7.9E-26 184.0 11.5 265 9-349 26-310 (311)
76 2r5s_A Uncharacterized protein 99.8 1.3E-20 4.5E-25 165.6 14.9 170 157-380 2-172 (176)
77 3urz_A Uncharacterized protein 99.8 1.3E-20 4.6E-25 170.4 15.3 187 194-422 3-191 (208)
78 3as5_A MAMA; tetratricopeptide 99.8 2.4E-19 8.3E-24 156.3 22.6 120 298-421 58-177 (186)
79 4ga2_A E3 SUMO-protein ligase 99.8 2.1E-21 7.2E-26 166.5 8.9 145 167-366 3-148 (150)
80 3as5_A MAMA; tetratricopeptide 99.8 1.8E-19 6E-24 157.2 21.1 168 161-383 8-175 (186)
81 1qqe_A Vesicular transport pro 99.8 1.3E-20 4.5E-25 179.6 14.6 213 167-396 43-282 (292)
82 4ga2_A E3 SUMO-protein ligase 99.8 5E-21 1.7E-25 164.1 10.4 141 243-403 8-149 (150)
83 2pzi_A Probable serine/threoni 99.8 1.7E-20 6E-25 199.6 16.7 175 133-333 402-584 (681)
84 3ulq_A Response regulator aspa 99.8 1E-19 3.5E-24 179.7 20.3 234 131-383 112-370 (383)
85 1qqe_A Vesicular transport pro 99.8 2.5E-20 8.6E-25 177.7 14.5 218 176-423 32-275 (292)
86 1hz4_A MALT regulatory protein 99.8 1.4E-18 4.9E-23 170.5 25.5 293 4-383 8-324 (373)
87 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.7E-19 9.1E-24 163.7 18.2 206 160-421 3-217 (225)
88 3dss_A Geranylgeranyl transfer 99.8 1.9E-18 6.5E-23 166.2 24.6 228 173-423 41-310 (331)
89 3edt_B KLC 2, kinesin light ch 99.8 3.9E-20 1.3E-24 172.7 12.5 208 192-418 40-282 (283)
90 3qou_A Protein YBBN; thioredox 99.8 2.2E-19 7.7E-24 170.8 17.4 171 155-380 111-283 (287)
91 2r5s_A Uncharacterized protein 99.8 1.5E-19 5.1E-24 158.8 12.6 171 191-417 2-173 (176)
92 3dss_A Geranylgeranyl transfer 99.8 1E-17 3.6E-22 161.1 26.4 242 139-397 47-318 (331)
93 3qou_A Protein YBBN; thioredox 99.8 8.4E-19 2.9E-23 166.8 18.3 169 192-417 114-284 (287)
94 3gyz_A Chaperone protein IPGC; 99.8 5.7E-20 1.9E-24 157.7 9.1 121 298-422 18-138 (151)
95 2yhc_A BAMD, UPF0169 lipoprote 99.8 7.7E-19 2.6E-23 160.6 17.0 176 194-422 3-181 (225)
96 3q7a_A Farnesyltransferase alp 99.8 2.4E-18 8.2E-23 166.3 19.3 248 159-420 52-335 (349)
97 3q15_A PSP28, response regulat 99.8 8.6E-19 3E-23 172.9 16.2 254 12-348 103-367 (378)
98 4gco_A Protein STI-1; structur 99.8 8.1E-19 2.8E-23 145.7 12.6 114 307-424 4-117 (126)
99 4gco_A Protein STI-1; structur 99.8 4.5E-18 1.5E-22 141.2 15.7 114 270-398 12-125 (126)
100 4f3v_A ESX-1 secretion system 99.8 1.7E-19 6E-24 169.0 7.7 219 165-420 11-240 (282)
101 3edt_B KLC 2, kinesin light ch 99.8 1.3E-18 4.4E-23 162.2 13.7 233 134-382 13-282 (283)
102 2vsy_A XCC0866; transferase, g 99.8 5.5E-18 1.9E-22 176.5 18.3 165 174-395 2-169 (568)
103 3gyz_A Chaperone protein IPGC; 99.8 4E-18 1.4E-22 146.2 13.2 84 298-383 52-135 (151)
104 1p5q_A FKBP52, FK506-binding p 99.8 9.9E-20 3.4E-24 177.3 2.8 164 246-429 127-306 (336)
105 2c2l_A CHIP, carboxy terminus 99.8 9.2E-18 3.2E-22 159.1 15.3 199 158-382 1-200 (281)
106 1xi4_A Clathrin heavy chain; a 99.8 1E-15 3.4E-20 167.3 32.9 308 16-423 991-1315(1630)
107 2vgx_A Chaperone SYCD; alterna 99.7 1.2E-17 4E-22 142.7 13.7 118 303-424 8-125 (148)
108 3q7a_A Farnesyltransferase alp 99.7 1.9E-16 6.6E-21 152.9 23.6 239 138-397 70-346 (349)
109 3rjv_A Putative SEL1 repeat pr 99.7 7E-17 2.4E-21 146.4 19.4 190 179-397 4-209 (212)
110 2vsy_A XCC0866; transferase, g 99.7 5.6E-17 1.9E-21 168.8 18.6 156 246-421 3-161 (568)
111 2ifu_A Gamma-SNAP; membrane fu 99.7 5.7E-17 2E-21 155.5 16.9 228 135-409 4-253 (307)
112 2xcb_A PCRH, regulatory protei 99.7 2E-17 7E-22 139.8 12.2 118 303-424 5-122 (142)
113 1xi4_A Clathrin heavy chain; a 99.7 3.4E-15 1.1E-19 163.2 31.0 292 10-402 1105-1415(1630)
114 2ifu_A Gamma-SNAP; membrane fu 99.7 1.2E-17 4.1E-22 160.2 10.4 208 174-422 4-228 (307)
115 1b89_A Protein (clathrin heavy 99.7 7E-18 2.4E-22 166.8 8.5 302 11-415 33-353 (449)
116 4f3v_A ESX-1 secretion system 99.7 2.2E-17 7.4E-22 154.8 10.7 198 135-358 19-247 (282)
117 2hr2_A Hypothetical protein; a 99.7 2.6E-16 8.8E-21 134.3 14.7 107 317-426 11-140 (159)
118 2fo7_A Synthetic consensus TPR 99.7 8.7E-16 3E-20 126.0 17.5 134 272-420 2-135 (136)
119 2vgx_A Chaperone SYCD; alterna 99.7 1.6E-16 5.6E-21 135.5 11.6 118 254-391 9-126 (148)
120 1p5q_A FKBP52, FK506-binding p 99.7 3E-18 1E-22 166.8 0.8 201 135-382 78-295 (336)
121 1a17_A Serine/threonine protei 99.7 1.9E-15 6.4E-20 129.6 18.2 138 271-423 13-152 (166)
122 3rjv_A Putative SEL1 repeat pr 99.7 1.5E-15 5.3E-20 137.5 17.6 181 212-419 3-199 (212)
123 3upv_A Heat shock protein STI1 99.7 2E-15 6.9E-20 124.2 16.1 115 271-400 4-124 (126)
124 2xcb_A PCRH, regulatory protei 99.7 2.1E-16 7.1E-21 133.5 10.1 114 271-399 18-131 (142)
125 1dce_A Protein (RAB geranylger 99.7 7E-16 2.4E-20 160.2 16.1 195 171-420 38-270 (567)
126 2e2e_A Formate-dependent nitri 99.7 4.4E-16 1.5E-20 136.1 12.4 125 295-423 23-150 (177)
127 3upv_A Heat shock protein STI1 99.7 1.7E-15 5.7E-20 124.7 14.3 105 314-421 1-105 (126)
128 2c2l_A CHIP, carboxy terminus 99.7 2.9E-16 1E-20 148.7 10.6 197 192-416 1-198 (281)
129 1hh8_A P67PHOX, NCF-2, neutrop 99.6 3.4E-15 1.1E-19 134.1 15.0 133 272-422 7-155 (213)
130 4gcn_A Protein STI-1; structur 99.6 3.6E-15 1.2E-19 123.7 13.9 101 271-383 8-114 (127)
131 4gcn_A Protein STI-1; structur 99.6 1.1E-15 3.7E-20 126.8 10.7 104 315-421 6-116 (127)
132 2qfc_A PLCR protein; TPR, HTH, 99.6 1.9E-14 6.6E-19 136.6 20.7 185 192-424 72-273 (293)
133 3sz7_A HSC70 cochaperone (SGT) 99.6 4.7E-15 1.6E-19 128.1 14.9 114 270-398 10-123 (164)
134 2fo7_A Synthetic consensus TPR 99.6 1E-14 3.4E-19 119.5 16.2 133 196-383 2-134 (136)
135 1dce_A Protein (RAB geranylger 99.6 2.8E-16 9.5E-21 163.2 8.1 200 138-350 45-271 (567)
136 1hh8_A P67PHOX, NCF-2, neutrop 99.6 6.9E-15 2.4E-19 132.0 16.1 166 163-382 8-173 (213)
137 3sz7_A HSC70 cochaperone (SGT) 99.6 4.5E-15 1.5E-19 128.2 13.8 109 312-423 6-114 (164)
138 2fbn_A 70 kDa peptidylprolyl i 99.6 5.5E-16 1.9E-20 138.4 8.2 119 296-418 52-187 (198)
139 2lni_A Stress-induced-phosphop 99.6 9.5E-15 3.2E-19 120.2 14.5 120 269-403 14-133 (133)
140 3u3w_A Transcriptional activat 99.6 2.6E-14 8.8E-19 135.7 19.5 179 197-424 77-273 (293)
141 1hxi_A PEX5, peroxisome target 99.6 4.4E-15 1.5E-19 122.0 12.2 101 319-422 19-119 (121)
142 3q49_B STIP1 homology and U bo 99.6 1.8E-14 6.2E-19 119.7 16.0 108 311-421 3-110 (137)
143 1b89_A Protein (clathrin heavy 99.6 6.7E-16 2.3E-20 152.7 8.0 288 20-411 13-305 (449)
144 2vyi_A SGTA protein; chaperone 99.6 2.5E-14 8.4E-19 116.9 16.1 120 270-404 11-130 (131)
145 1hxi_A PEX5, peroxisome target 99.6 5.8E-15 2E-19 121.3 12.2 101 273-388 19-119 (121)
146 1zu2_A Mitochondrial import re 99.6 6E-15 2E-19 125.6 11.9 94 292-389 12-126 (158)
147 2hr2_A Hypothetical protein; a 99.6 5.6E-15 1.9E-19 126.1 11.2 107 271-392 11-140 (159)
148 2e2e_A Formate-dependent nitri 99.6 1.3E-14 4.6E-19 126.6 14.0 127 244-390 22-151 (177)
149 2fbn_A 70 kDa peptidylprolyl i 99.6 1.4E-15 4.8E-20 135.7 7.8 179 161-378 4-183 (198)
150 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.9E-16 6.5E-21 160.5 0.9 159 175-373 248-406 (457)
151 2qfc_A PLCR protein; TPR, HTH, 99.6 7.9E-14 2.7E-18 132.4 18.9 178 158-383 72-268 (293)
152 3rkv_A Putative peptidylprolyl 99.6 1.5E-14 5.2E-19 124.6 12.1 119 271-404 11-148 (162)
153 2lni_A Stress-induced-phosphop 99.6 9.5E-14 3.2E-18 114.1 16.2 123 190-367 11-133 (133)
154 1a17_A Serine/threonine protei 99.6 9.1E-14 3.1E-18 119.0 16.7 133 195-382 13-147 (166)
155 3q49_B STIP1 homology and U bo 99.6 3.5E-14 1.2E-18 118.0 13.4 117 271-402 9-130 (137)
156 1na0_A Designed protein CTPR3; 99.6 1.9E-13 6.5E-18 110.5 16.8 117 271-402 9-125 (125)
157 1elw_A TPR1-domain of HOP; HOP 99.6 1.6E-13 5.6E-18 109.9 16.2 113 271-398 4-116 (118)
158 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 4.9E-15 1.7E-19 150.2 8.4 153 245-417 247-415 (457)
159 2kck_A TPR repeat; tetratricop 99.5 1.1E-14 3.9E-19 115.8 8.1 107 312-421 1-110 (112)
160 1wao_1 Serine/threonine protei 99.5 3E-15 1E-19 152.5 5.4 136 271-421 6-154 (477)
161 3k9i_A BH0479 protein; putativ 99.5 1.2E-14 4.1E-19 118.3 7.8 100 295-398 3-105 (117)
162 3rkv_A Putative peptidylprolyl 99.5 9.6E-14 3.3E-18 119.5 13.2 103 317-422 11-131 (162)
163 2xev_A YBGF; tetratricopeptide 99.5 1.7E-13 6E-18 112.4 14.1 116 273-403 4-125 (129)
164 3u3w_A Transcriptional activat 99.5 4.2E-13 1.4E-17 127.3 17.7 170 166-382 80-267 (293)
165 2if4_A ATFKBP42; FKBP-like, al 99.5 2.3E-14 7.8E-19 139.4 8.1 138 271-423 179-334 (338)
166 3gw4_A Uncharacterized protein 99.5 1.8E-13 6E-18 121.4 13.2 163 245-424 5-183 (203)
167 2if4_A ATFKBP42; FKBP-like, al 99.5 1.3E-14 4.5E-19 141.1 6.4 157 192-388 176-333 (338)
168 1na0_A Designed protein CTPR3; 99.5 5E-13 1.7E-17 108.0 14.6 110 311-423 2-112 (125)
169 2dba_A Smooth muscle cell asso 99.5 2.7E-13 9.1E-18 113.7 12.7 110 311-423 22-134 (148)
170 2vyi_A SGTA protein; chaperone 99.5 2.5E-13 8.6E-18 110.8 12.1 110 311-423 6-115 (131)
171 2xev_A YBGF; tetratricopeptide 99.5 2.2E-13 7.6E-18 111.8 11.7 109 317-427 2-115 (129)
172 3mv2_B Coatomer subunit epsilo 99.5 5.8E-13 2E-17 126.3 16.0 208 180-411 85-306 (310)
173 2dba_A Smooth muscle cell asso 99.5 5E-13 1.7E-17 112.0 14.0 115 271-400 28-145 (148)
174 1elw_A TPR1-domain of HOP; HOP 99.5 4.1E-13 1.4E-17 107.5 12.8 105 316-423 3-107 (118)
175 1wao_1 Serine/threonine protei 99.5 3.5E-15 1.2E-19 152.1 0.6 162 245-424 19-204 (477)
176 1ihg_A Cyclophilin 40; ppiase 99.5 4.3E-13 1.5E-17 132.0 13.5 125 271-410 223-363 (370)
177 4b4t_Q 26S proteasome regulato 99.5 9.8E-13 3.4E-17 131.1 16.3 206 162-381 5-245 (434)
178 1elr_A TPR2A-domain of HOP; HO 99.5 6.7E-13 2.3E-17 108.3 12.4 116 271-402 4-126 (131)
179 3gw4_A Uncharacterized protein 99.4 1.1E-12 3.6E-17 116.3 14.3 165 171-383 2-178 (203)
180 3ro3_A PINS homolog, G-protein 99.4 7.2E-13 2.5E-17 112.0 12.5 140 270-421 8-162 (164)
181 1elr_A TPR2A-domain of HOP; HO 99.4 7.3E-13 2.5E-17 108.1 11.1 104 314-420 1-111 (131)
182 2kat_A Uncharacterized protein 99.4 1.3E-12 4.5E-17 105.5 11.6 82 300-383 3-84 (115)
183 1zu2_A Mitochondrial import re 99.4 3E-13 1E-17 115.1 7.9 93 328-423 13-126 (158)
184 3k9i_A BH0479 protein; putativ 99.4 3.4E-13 1.2E-17 109.6 7.3 93 329-424 2-97 (117)
185 3mv2_B Coatomer subunit epsilo 99.4 4.8E-12 1.7E-16 119.9 16.3 177 153-351 92-287 (310)
186 2kck_A TPR repeat; tetratricop 99.4 9.6E-13 3.3E-17 104.4 9.6 105 157-264 2-109 (112)
187 4e6h_A MRNA 3'-END-processing 99.4 2.8E-11 9.6E-16 127.6 22.7 230 178-423 326-576 (679)
188 2l6j_A TPR repeat-containing p 99.3 7.6E-13 2.6E-17 105.4 5.5 95 316-413 3-103 (111)
189 4e6h_A MRNA 3'-END-processing 99.3 2.9E-11 9.9E-16 127.5 17.9 217 150-384 332-573 (679)
190 1ihg_A Cyclophilin 40; ppiase 99.3 8.5E-12 2.9E-16 122.7 13.0 141 195-374 223-363 (370)
191 3ma5_A Tetratricopeptide repea 99.3 6.2E-12 2.1E-16 99.2 9.7 86 312-398 2-87 (100)
192 1na3_A Designed protein CTPR2; 99.3 1.8E-11 6.1E-16 93.7 11.5 88 312-402 3-91 (91)
193 2kat_A Uncharacterized protein 99.3 5.4E-11 1.9E-15 95.8 12.3 87 334-423 2-88 (115)
194 4b4t_Q 26S proteasome regulato 99.3 1.6E-10 5.4E-15 115.0 17.9 227 12-262 6-246 (434)
195 2l6j_A TPR repeat-containing p 99.2 3.8E-12 1.3E-16 101.3 4.3 95 271-378 4-104 (111)
196 3ro3_A PINS homolog, G-protein 99.2 9E-11 3.1E-15 98.9 12.9 141 195-383 9-160 (164)
197 2kc7_A BFR218_protein; tetratr 99.2 3.4E-11 1.2E-15 94.0 8.6 94 320-424 3-97 (99)
198 3ma5_A Tetratricopeptide repea 99.2 7.1E-11 2.4E-15 93.0 8.6 77 346-425 2-78 (100)
199 1na3_A Designed protein CTPR2; 99.1 4.7E-10 1.6E-14 85.6 11.6 83 271-366 9-91 (91)
200 2kc7_A BFR218_protein; tetratr 99.1 2.1E-10 7.2E-15 89.5 7.8 79 295-383 13-92 (99)
201 3u64_A Protein TP_0956; tetrat 99.1 2E-09 7E-14 99.7 15.5 112 271-383 152-271 (301)
202 3ly7_A Transcriptional activat 99.1 2.2E-09 7.5E-14 103.5 15.9 122 296-422 213-344 (372)
203 2uy1_A Cleavage stimulation fa 99.1 9.6E-07 3.3E-11 89.9 35.3 212 177-419 195-415 (493)
204 3n71_A Histone lysine methyltr 99.0 6.4E-10 2.2E-14 112.9 10.3 147 9-222 308-462 (490)
205 3ly7_A Transcriptional activat 99.0 8.3E-09 2.8E-13 99.5 16.8 153 189-389 188-345 (372)
206 1klx_A Cysteine rich protein B 99.0 8.5E-09 2.9E-13 86.2 14.9 110 296-417 9-126 (138)
207 1klx_A Cysteine rich protein B 99.0 8.7E-09 3E-13 86.2 14.8 120 246-395 9-136 (138)
208 3u64_A Protein TP_0956; tetrat 99.0 2.3E-09 8E-14 99.4 12.0 114 305-421 140-273 (301)
209 3bee_A Putative YFRE protein; 99.0 4.8E-09 1.6E-13 81.4 10.5 70 313-383 2-74 (93)
210 2uy1_A Cleavage stimulation fa 98.9 4.7E-07 1.6E-11 92.2 26.5 240 175-422 28-354 (493)
211 3n71_A Histone lysine methyltr 98.9 3.1E-09 1.1E-13 107.9 10.1 121 295-418 322-465 (490)
212 1pc2_A Mitochondria fission pr 98.9 1.3E-08 4.6E-13 85.5 12.1 98 297-398 13-115 (152)
213 3bee_A Putative YFRE protein; 98.8 2.4E-08 8.3E-13 77.4 9.4 74 157-232 2-78 (93)
214 3qww_A SET and MYND domain-con 98.5 2.5E-07 8.6E-12 92.4 9.9 86 296-382 312-412 (433)
215 1pc2_A Mitochondria fission pr 98.5 6.7E-07 2.3E-11 75.1 10.9 99 249-362 15-115 (152)
216 3qww_A SET and MYND domain-con 98.5 2.5E-07 8.5E-12 92.4 9.6 92 329-420 310-414 (433)
217 2v5f_A Prolyl 4-hydroxylase su 98.5 1.2E-06 4.2E-11 69.1 11.7 79 316-397 4-89 (104)
218 2v5f_A Prolyl 4-hydroxylase su 98.4 1.1E-06 3.6E-11 69.4 8.6 76 160-237 4-86 (104)
219 3qwp_A SET and MYND domain-con 98.4 1.7E-06 5.7E-11 86.4 11.5 95 326-420 296-403 (429)
220 3qwp_A SET and MYND domain-con 98.4 1.2E-06 4.1E-11 87.5 10.3 87 294-381 299-400 (429)
221 1nzn_A CGI-135 protein, fissio 98.4 4.2E-06 1.4E-10 67.7 11.3 100 297-399 16-119 (126)
222 4g26_A Pentatricopeptide repea 98.0 0.0012 4E-08 67.1 22.8 115 296-416 84-203 (501)
223 1y8m_A FIS1; mitochondria, unk 97.8 0.00051 1.7E-08 56.4 14.1 96 299-398 23-121 (144)
224 4h7y_A Dual specificity protei 97.8 0.00016 5.4E-09 59.8 10.3 109 312-423 8-129 (161)
225 3o48_A Mitochondria fission 1 97.8 0.00029 9.8E-09 57.1 11.0 84 315-400 38-124 (134)
226 1nzn_A CGI-135 protein, fissio 97.7 0.00015 5E-09 58.7 9.0 82 154-237 28-114 (126)
227 4g26_A Pentatricopeptide repea 97.7 0.0018 6.3E-08 65.6 19.0 174 67-261 30-204 (501)
228 4h7y_A Dual specificity protei 97.4 0.0046 1.6E-07 51.2 13.2 54 296-350 74-127 (161)
229 3ffl_A Anaphase-promoting comp 97.2 0.00098 3.4E-08 56.2 8.3 52 295-347 33-93 (167)
230 3o48_A Mitochondria fission 1 97.2 0.0017 5.9E-08 52.6 9.1 82 271-362 40-122 (134)
231 3ffl_A Anaphase-promoting comp 97.1 0.0032 1.1E-07 53.2 10.4 92 322-413 25-147 (167)
232 1y8m_A FIS1; mitochondria, unk 97.1 0.0025 8.5E-08 52.3 8.9 81 271-361 39-120 (144)
233 4gns_B Protein CSD3, chitin bi 96.5 0.022 7.4E-07 60.2 12.7 113 298-414 265-397 (754)
234 1zbp_A Hypothetical protein VP 96.4 0.0023 7.9E-08 58.4 4.4 124 295-429 10-141 (273)
235 3txn_A 26S proteasome regulato 96.1 0.22 7.6E-06 48.4 17.1 95 322-416 104-209 (394)
236 2ff4_A Probable regulatory pro 95.9 0.16 5.6E-06 49.3 15.0 66 354-421 173-238 (388)
237 1ya0_A SMG-7 transcript varian 95.5 0.093 3.2E-06 52.8 11.5 65 297-363 167-231 (497)
238 4gns_B Protein CSD3, chitin bi 95.3 0.16 5.4E-06 53.6 13.1 59 319-378 339-397 (754)
239 1qsa_A Protein (soluble lytic 95.1 3.4 0.00012 42.6 22.3 116 296-416 228-347 (618)
240 3txn_A 26S proteasome regulato 94.6 2.4 8.1E-05 41.1 18.5 181 62-264 18-213 (394)
241 2ff4_A Probable regulatory pro 94.4 0.62 2.1E-05 45.2 14.0 60 319-379 173-232 (388)
242 3mkq_A Coatomer beta'-subunit; 94.4 1.3 4.6E-05 46.6 17.9 48 170-222 661-708 (814)
243 3kae_A CDC27, possible protein 94.1 0.5 1.7E-05 39.8 10.4 102 312-419 28-145 (242)
244 1ya0_A SMG-7 transcript varian 94.0 0.2 6.9E-06 50.3 9.7 80 318-400 153-232 (497)
245 3kae_A CDC27, possible protein 94.0 1.2 4E-05 37.6 12.4 99 158-262 30-144 (242)
246 3mkq_B Coatomer subunit alpha; 93.6 1.1 3.7E-05 38.2 12.1 98 294-413 17-114 (177)
247 3spa_A Mtrpol, DNA-directed RN 92.1 1.7 5.8E-05 47.2 13.6 93 319-416 129-229 (1134)
248 3mkq_A Coatomer beta'-subunit; 91.9 4.2 0.00014 42.7 16.9 76 295-377 665-748 (814)
249 1zbp_A Hypothetical protein VP 91.6 0.91 3.1E-05 41.3 9.4 57 326-383 6-62 (273)
250 4b4t_R RPN7, 26S proteasome re 90.7 0.87 3E-05 44.8 9.2 118 298-416 113-236 (429)
251 4b4t_S RPN3, 26S proteasome re 89.8 0.16 5.6E-06 50.8 3.0 110 311-422 175-304 (523)
252 3mkq_B Coatomer subunit alpha; 88.2 11 0.00038 31.9 16.7 56 159-222 6-61 (177)
253 3spa_A Mtrpol, DNA-directed RN 86.3 3.4 0.00012 45.0 10.5 96 163-260 129-229 (1134)
254 4b4t_S RPN3, 26S proteasome re 86.1 0.79 2.7E-05 45.9 5.3 141 241-383 145-301 (523)
255 4b4t_P 26S proteasome regulato 85.2 19 0.00064 35.3 14.9 103 319-421 139-251 (445)
256 2wpv_A GET4, UPF0363 protein Y 84.9 25 0.00084 32.7 17.0 41 179-219 118-158 (312)
257 4fhn_B Nucleoporin NUP120; pro 83.4 4.3 0.00015 45.1 10.4 103 307-411 833-961 (1139)
258 4fhn_B Nucleoporin NUP120; pro 83.3 9.8 0.00034 42.3 13.2 55 164-222 815-869 (1139)
259 1wy6_A Hypothetical protein ST 81.6 19 0.00065 29.2 10.5 80 134-222 73-152 (172)
260 4b4t_R RPN7, 26S proteasome re 80.5 4.5 0.00015 39.6 8.2 102 162-263 132-239 (429)
261 2wpv_A GET4, UPF0363 protein Y 79.8 39 0.0013 31.4 15.2 81 298-380 116-216 (312)
262 4b4t_P 26S proteasome regulato 78.6 51 0.0018 32.1 16.5 98 163-261 139-247 (445)
263 4gq2_M Nucleoporin NUP120; bet 75.7 23 0.00077 38.5 12.7 54 166-223 815-868 (950)
264 4gq2_M Nucleoporin NUP120; bet 72.6 16 0.00053 39.8 10.5 105 153-274 832-939 (950)
265 2v6y_A AAA family ATPase, P60 71.4 8 0.00027 28.2 5.5 35 9-43 10-44 (83)
266 2dl1_A Spartin; SPG20, MIT, st 67.8 9.3 0.00032 29.7 5.3 33 12-44 24-56 (116)
267 3lpz_A GET4 (YOR164C homolog); 66.0 87 0.003 29.3 29.6 41 179-219 120-160 (336)
268 2w2u_A Hypothetical P60 katani 64.2 16 0.00054 26.6 5.8 32 298-345 16-47 (83)
269 1wy6_A Hypothetical protein ST 62.1 23 0.00079 28.7 6.7 50 296-346 105-154 (172)
270 2w2u_A Hypothetical P60 katani 61.2 12 0.0004 27.3 4.6 35 10-44 19-53 (83)
271 2crb_A Nuclear receptor bindin 60.0 19 0.00066 26.7 5.4 23 357-379 20-42 (97)
272 4ady_A RPN2, 26S proteasome re 59.1 2E+02 0.0067 31.1 15.3 178 205-405 384-577 (963)
273 2v6x_A Vacuolar protein sortin 58.8 13 0.00046 27.0 4.6 34 9-42 12-45 (85)
274 4ady_A RPN2, 26S proteasome re 56.5 1E+02 0.0034 33.3 12.5 83 171-260 384-482 (963)
275 2cpt_A SKD1 protein, vacuolar 56.3 15 0.0005 28.8 4.6 35 9-43 17-51 (117)
276 3ax2_A Mitochondrial import re 54.3 29 0.001 24.5 5.5 29 321-349 21-49 (73)
277 1om2_A Protein (mitochondrial 53.7 24 0.00081 26.4 5.1 28 322-349 25-52 (95)
278 2crb_A Nuclear receptor bindin 52.6 17 0.00059 26.9 4.1 28 195-222 15-42 (97)
279 4a5x_A MITD1, MIT domain-conta 51.6 18 0.00062 26.5 4.2 33 11-43 17-49 (86)
280 2v6y_A AAA family ATPase, P60 49.2 27 0.00094 25.3 4.9 27 394-420 17-43 (83)
281 3qnk_A Putative lipoprotein; a 48.3 40 0.0014 33.6 7.7 83 6-92 105-211 (517)
282 1wfd_A Hypothetical protein 15 46.4 24 0.00081 26.3 4.2 32 12-43 17-48 (93)
283 2eqg_A Tumor necrosis factor, 45.7 7 0.00024 24.3 0.9 10 435-444 14-23 (49)
284 4a5x_A MITD1, MIT domain-conta 45.3 38 0.0013 24.7 5.1 27 393-419 21-47 (86)
285 2ijq_A Hypothetical protein; s 43.6 97 0.0033 25.6 7.9 58 165-222 36-102 (161)
286 3ax2_A Mitochondrial import re 43.1 33 0.0011 24.3 4.3 27 166-192 22-48 (73)
287 2rpa_A Katanin P60 ATPase-cont 42.5 21 0.00072 25.6 3.2 25 321-345 16-40 (78)
288 3lxu_X Tripeptidyl-peptidase 2 42.3 4.1E+02 0.014 29.8 15.0 75 335-418 1267-1342(1354)
289 1o9d_A 14-3-3-like protein C; 42.1 1.9E+02 0.0065 25.9 14.1 57 164-220 11-71 (260)
290 1wfd_A Hypothetical protein 15 41.0 42 0.0014 24.9 4.9 26 395-420 22-47 (93)
291 2v6x_A Vacuolar protein sortin 40.7 54 0.0018 23.7 5.4 23 397-419 22-44 (85)
292 3t5x_A PCI domain-containing p 39.7 65 0.0022 27.6 6.7 32 319-350 16-47 (203)
293 1om2_A Protein (mitochondrial 38.9 49 0.0017 24.7 4.8 28 356-383 24-51 (95)
294 3jq1_A SUSD superfamily protei 38.8 63 0.0022 31.8 7.3 83 6-92 106-209 (481)
295 3ubw_A 14-3-3E, 14-3-3 protein 38.5 2.2E+02 0.0074 25.5 16.7 177 162-345 32-227 (261)
296 3lew_A SUSD-like carbohydrate 38.0 89 0.003 30.9 8.3 83 6-92 115-232 (495)
297 3kez_A Putative sugar binding 37.8 1E+02 0.0036 30.0 8.7 83 6-92 113-225 (461)
298 3mv2_A Coatomer subunit alpha; 37.6 82 0.0028 29.2 7.2 35 5-40 110-144 (325)
299 2cpt_A SKD1 protein, vacuolar 37.5 52 0.0018 25.6 5.1 26 355-380 21-46 (117)
300 3mcx_A SUSD superfamily protei 37.5 1.1E+02 0.0037 29.9 8.8 84 5-92 118-231 (477)
301 3ph0_C ASCG; type III secretio 37.5 90 0.0031 20.8 5.5 44 362-408 16-60 (61)
302 3myv_A SUSD superfamily protei 35.9 1.1E+02 0.0037 29.8 8.5 73 7-90 108-217 (454)
303 1qsa_A Protein (soluble lytic 34.2 3.9E+02 0.013 27.1 23.7 231 153-415 61-312 (618)
304 2cfu_A SDSA1; SDS-hydrolase, l 33.6 1.1E+02 0.0039 31.4 8.4 51 353-405 450-500 (658)
305 3i4g_A SUSD-like carbohydrate 33.3 82 0.0028 31.5 7.2 84 6-92 119-227 (528)
306 3t5x_A PCI domain-containing p 33.2 90 0.0031 26.7 6.5 31 353-383 15-45 (203)
307 3snx_A SUSD homolog, putative 31.2 1.9E+02 0.0064 28.2 9.3 84 6-92 103-220 (460)
308 2ijq_A Hypothetical protein; s 31.1 2.2E+02 0.0075 23.4 8.7 62 358-419 38-106 (161)
309 3lxu_X Tripeptidyl-peptidase 2 31.0 2.8E+02 0.0094 31.2 11.1 67 298-366 1265-1331(1354)
310 3esl_A Checkpoint serine/threo 30.8 1.3E+02 0.0045 25.8 7.0 73 155-228 74-148 (202)
311 3re2_A Predicted protein; meni 30.1 1.6E+02 0.0056 27.8 7.8 46 336-382 276-326 (472)
312 3mv2_A Coatomer subunit alpha; 29.5 2.8E+02 0.0095 25.7 9.3 24 69-92 34-57 (325)
313 3t5v_B Nuclear mRNA export pro 28.5 61 0.0021 31.8 5.1 62 322-383 181-252 (455)
314 4gq4_A Menin; tumor suppressor 26.6 1.8E+02 0.006 28.1 7.5 59 335-394 282-349 (489)
315 3hdx_A SUSD homolog, SUSD supe 26.5 1.4E+02 0.0048 29.1 7.5 85 6-92 108-226 (478)
316 3t5v_B Nuclear mRNA export pro 24.2 1.7E+02 0.0058 28.6 7.3 57 293-350 187-254 (455)
317 3l22_A SUSD superfamily protei 23.8 54 0.0018 31.9 3.7 83 6-90 114-228 (441)
318 3eab_A Spastin; spastin, MIT, 23.3 45 0.0015 24.6 2.2 33 12-44 18-53 (89)
319 2cfu_A SDSA1; SDS-hydrolase, l 23.1 1.5E+02 0.005 30.6 7.0 53 317-370 449-501 (658)
320 3u84_A Menin; MLL, JUND, ledgf 23.1 2.4E+02 0.0084 27.2 7.7 45 336-381 298-347 (550)
321 3iqu_A 14-3-3 protein sigma; s 22.9 3.9E+02 0.013 23.4 16.5 175 161-344 8-203 (236)
322 3uzd_A 14-3-3 protein gamma; s 21.5 4.2E+02 0.014 23.4 18.7 56 164-219 7-64 (248)
323 3re2_A Predicted protein; meni 21.0 4.7E+02 0.016 24.8 9.0 97 306-419 216-327 (472)
324 4b4t_O 26S proteasome regulato 20.9 4.2E+02 0.014 25.0 9.4 64 354-417 129-198 (393)
325 2rpa_A Katanin P60 ATPase-cont 20.8 1.3E+02 0.0045 21.4 4.3 30 394-423 18-47 (78)
326 3ihv_A SUSD homolog; NP_813570 20.6 1.7E+02 0.006 28.9 6.9 85 6-92 114-233 (535)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.4e-38 Score=315.29 Aligned_cols=340 Identities=17% Similarity=0.116 Sum_probs=282.5
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhC
Q 013375 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL 91 (444)
Q Consensus 12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~ 91 (444)
++..+|.++...|++++|+..++++++. .|.. ..++..+|.++...|++++|+..|+++++
T Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~a~~~--------~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 95 (388)
T 1w3b_A 35 VLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLL-----------AEAYSNLGNVYKERGQLQEAIEHYRHALR 95 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCc-----------hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555666666666666666666666654 2221 24666777777777777777777777777
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013375 92 PCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAF 171 (444)
Q Consensus 92 ~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l 171 (444)
. +|.+... ...++.. +...|++++|+..+ +.++..+|++..++..+|.++
T Consensus 96 ~----~p~~~~~-~~~l~~~--------------------~~~~g~~~~A~~~~-----~~al~~~p~~~~~~~~l~~~~ 145 (388)
T 1w3b_A 96 L----KPDFIDG-YINLAAA--------------------LVAAGDMEGAVQAY-----VSALQYNPDLYCVRSDLGNLL 145 (388)
T ss_dssp H----CTTCHHH-HHHHHHH--------------------HHHHSCSSHHHHHH-----HHHHHHCTTCTHHHHHHHHHH
T ss_pred c----CcchHHH-HHHHHHH--------------------HHHcCCHHHHHHHH-----HHHHHhCCCcHHHHHHHHHHH
Confidence 7 4443221 2233333 33456778888875 445678899999999999999
Q ss_pred HhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHH
Q 013375 172 SIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEG 251 (444)
Q Consensus 172 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA 251 (444)
...|++++|++.|+++++.+|+++.+|+++|.++...|++++|+..|++++ .++|+++.++..+|.++ ...|++++|
T Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~-~~~~~~~~A 222 (388)
T 1w3b_A 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV--TLDPNFLDAYINLGNVL-KEARIFDRA 222 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH-HTTTCTTHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCcHHHHHHHHHHH-HHcCCHHHH
Confidence 999999999999999999999999999999999999999999999999999 89999999988887765 457899999
Q ss_pred HHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 013375 252 ATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR 331 (444)
Q Consensus 252 ~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g 331 (444)
+..|+++++..|.+ ..++..+|.++... |++++|++.|++++ +++|+++.+++++|.++...|
T Consensus 223 ~~~~~~al~~~p~~-----~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 223 VAAYLRALSLSPNH-----AVVHGNLACVYYEQ-----------GLIDLAIDTYRRAI-ELQPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHHHHCTTC-----HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HTCSSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhCcCC-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcC
Confidence 99999999965543 46788889888764 67899999999999 999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 013375 332 KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETY 411 (444)
Q Consensus 332 ~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~ 411 (444)
++++|+..|+++++++|++ ..+|..+|.++..+|++++|+..++++++..| ++..+++++|.++..+|++++|+..|
T Consensus 286 ~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 286 SVAEAEDCYNTALRLCPTH-ADSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT--TCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999 59999999999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHHHhhhh
Q 013375 412 THLLAALQVQTK 423 (444)
Q Consensus 412 ~~al~l~~~~~~ 423 (444)
++++++.|+..+
T Consensus 363 ~~a~~~~p~~~~ 374 (388)
T 1w3b_A 363 KEAIRISPTFAD 374 (388)
T ss_dssp HHHHTTCTTCHH
T ss_pred HHHHhhCCCCHH
Confidence 999998887654
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.6e-38 Score=311.61 Aligned_cols=336 Identities=17% Similarity=0.077 Sum_probs=300.6
Q ss_pred HHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCC
Q 013375 15 LKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCW 94 (444)
Q Consensus 15 ~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~ 94 (444)
..|..+.+.|++++|++.|.++++. .|.+ ..++..++.++...|++++|+..++++++.
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~--------~p~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-- 62 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQ--------EPDN-----------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-- 62 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 4688899999999999999999887 3443 247778899999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 013375 95 NLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIA 174 (444)
Q Consensus 95 ~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~ 174 (444)
+|.+.. ....++.. +...|++++|+..+ +.++...|+++.+|..+|.++...
T Consensus 63 --~p~~~~-~~~~lg~~--------------------~~~~g~~~~A~~~~-----~~al~~~p~~~~~~~~l~~~~~~~ 114 (388)
T 1w3b_A 63 --NPLLAE-AYSNLGNV--------------------YKERGQLQEAIEHY-----RHALRLKPDFIDGYINLAAALVAA 114 (388)
T ss_dssp --CTTCHH-HHHHHHHH--------------------HHHHTCHHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred --CCCchH-HHHHHHHH--------------------HHHCCCHHHHHHHH-----HHHHHcCcchHHHHHHHHHHHHHc
Confidence 554432 22344433 34467899999886 556778899999999999999999
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHH
Q 013375 175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATF 254 (444)
Q Consensus 175 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~ 254 (444)
|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++ ..+|+++.++..+|.++ ...|++++|+..
T Consensus 115 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~ 191 (388)
T 1w3b_A 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI--ETQPNFAVAWSNLGCVF-NAQGEIWLAIHH 191 (388)
T ss_dssp SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH-HTTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHH-HHcCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 89999999998887765 567999999999
Q ss_pred HHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 013375 255 ASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLN 334 (444)
Q Consensus 255 ~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~ 334 (444)
|+++++..|.. ..++..+|.++... +++++|+..|++++ .++|+++.+++++|.++...|+++
T Consensus 192 ~~~al~~~p~~-----~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~ 254 (388)
T 1w3b_A 192 FEKAVTLDPNF-----LDAYINLGNVLKEA-----------RIFDRAVAAYLRAL-SLSPNHAVVHGNLACVYYEQGLID 254 (388)
T ss_dssp HHHHHHHCTTC-----HHHHHHHHHHHHTT-----------TCTTHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCCCc-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hhCcCCHHHHHHHHHHHHHcCCHH
Confidence 99999965543 57899999998765 56899999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013375 335 AAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (444)
Q Consensus 335 ~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 414 (444)
+|+..|+++++++|++ ..+|..+|.++...|++++|+..|+++++..| ++..++..+|.++...|++++|+..|+++
T Consensus 255 ~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 255 LAIDTYRRAIELQPHF-PDAYCNLANALKEKGSVAEAEDCYNTALRLCP--THADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHHHHTCSSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999 49999999999999999999999999999999 89999999999999999999999999999
Q ss_pred HHHHHhhh
Q 013375 415 LAALQVQT 422 (444)
Q Consensus 415 l~l~~~~~ 422 (444)
+++.|+..
T Consensus 332 l~~~p~~~ 339 (388)
T 1w3b_A 332 LEVFPEFA 339 (388)
T ss_dssp TTSCTTCH
T ss_pred HhcCCCcH
Confidence 99877654
No 3
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-34 Score=294.63 Aligned_cols=268 Identities=11% Similarity=0.043 Sum_probs=239.5
Q ss_pred CCCcHHHHHHHHHHHHH--HHHHhhC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 013375 134 PRNNIEEAILLLMILLR--KVALKRI-------EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALC 204 (444)
Q Consensus 134 ~~~~~~eAi~~l~~~~~--~~~l~~~-------p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 204 (444)
..|++++|+..+...+. +..+... |.++.++..+|.++...|++++|+..|++++..+|+ +.+|+.+|.+
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~ 279 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALI 279 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHH
Confidence 47899999988633211 0001123 445679999999999999999999999999999999 9999999999
Q ss_pred HHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhh
Q 013375 205 YYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ 284 (444)
Q Consensus 205 l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 284 (444)
+...|++++|+..|++++ ..+|+++.++..++.++.. .|++++|+..++++++..|.+ ..++..+|.++...
T Consensus 280 ~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKAL--KLDSNNSSVYYHRGQMNFI-LQNYDQAGKDFDKAKELDPEN-----IFPYIQLACLAYRE 351 (514)
T ss_dssp HHTSSCCTTGGGHHHHHH--TTCTTCTHHHHHHHHHHHH-TTCTTHHHHHHHHHHHTCSSC-----SHHHHHHHHHTTTT
T ss_pred HHHCCCHHHHHHHHHHHh--hcCcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHHc
Confidence 999999999999999999 8999999999888887654 689999999999999965543 46888999998765
Q ss_pred hhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChH------HHHHH
Q 013375 285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK------GWLLM 358 (444)
Q Consensus 285 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~------~~~~l 358 (444)
|++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..|++++.++|+++ . +|..+
T Consensus 352 -----------~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l 418 (514)
T 2gw1_A 352 -----------NKFDDCETLFSEAK-RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD-GIYVGIAPLVGK 418 (514)
T ss_dssp -----------TCHHHHHHHHHHHH-HHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS-SCSSCSHHHHHH
T ss_pred -----------CCHHHHHHHHHHHH-HHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHH
Confidence 57899999999999 99999999999999999999999999999999999999984 5 99999
Q ss_pred HHHHHH---ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhc
Q 013375 359 ARILSA---QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (444)
Q Consensus 359 a~~l~~---~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 425 (444)
|.++.. .|++++|+..++++++..| ++..+++.+|.++...|++++|+..|++++++.|+..+..
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 486 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLDP--RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL 486 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHH
Confidence 999999 9999999999999999999 8999999999999999999999999999999999876643
No 4
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.3e-34 Score=297.85 Aligned_cols=371 Identities=11% Similarity=0.030 Sum_probs=296.1
Q ss_pred hhHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHH
Q 013375 3 IHAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRET 82 (444)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA 82 (444)
...-.-.+++|+.+|.++.+.|++++|+..|+++++. .|.+ ..++..+|.+|...|++++|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~-----------~~~~~~la~~~~~~g~~~~A 78 (537)
T 3fp2_A 18 PSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--------DPNE-----------PVFYSNISACYISTGDLEKV 78 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHHTCHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--------CCCC-----------cHHHHHHHHHHHHcCCHHHH
Confidence 3344457889999999999999999999999999987 3332 25788889999999999999
Q ss_pred HHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCC-----------CCCccc--------------------------
Q 013375 83 IMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGET-----------CPPNLR-------------------------- 125 (444)
Q Consensus 83 ~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~-----------~~~~~~-------------------------- 125 (444)
+..|+++++. +|.+... ...++..+...+... .|....
T Consensus 79 ~~~~~~al~~----~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~ 153 (537)
T 3fp2_A 79 IEFTTKALEI----KPDHSKA-LLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD 153 (537)
T ss_dssp HHHHHHHHHH----CTTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHhc----CCchHHH-HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999998 4544322 122222222211100 000000
Q ss_pred --------------------------------------------cccCccccC--------CCcHHHHHHHHHHHHHHHH
Q 013375 126 --------------------------------------------SQMGSSFVP--------RNNIEEAILLLMILLRKVA 153 (444)
Q Consensus 126 --------------------------------------------~~~~~~~~~--------~~~~~eAi~~l~~~~~~~~ 153 (444)
..+..++.. .+++++|+..+ +.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~-----~~~ 228 (537)
T 3fp2_A 154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMY-----HSL 228 (537)
T ss_dssp -----CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHH-----HHH
T ss_pred ccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-----HHH
Confidence 000000000 12556666654 567
Q ss_pred HhhCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCC
Q 013375 154 LKRIEWDPS-------ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSE 226 (444)
Q Consensus 154 l~~~p~~~~-------~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~ 226 (444)
+...|+++. ++..+|.++...|++++|+..|++++..+|+ +.+|+.+|.++...|++++|+..|++++ ..
T Consensus 229 l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~ 305 (537)
T 3fp2_A 229 LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAV--DL 305 (537)
T ss_dssp HC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHH--HH
T ss_pred HHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHh--cc
Confidence 788899866 5778888999999999999999999999999 9999999999999999999999999999 89
Q ss_pred CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHH
Q 013375 227 DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV 306 (444)
Q Consensus 227 ~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~ 306 (444)
+|+++.++..+|.++. ..|++++|+..++++++..|.+ ..++..+|.++... |++++|+..|+
T Consensus 306 ~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~-----------g~~~~A~~~~~ 368 (537)
T 3fp2_A 306 NPEYPPTYYHRGQMYF-ILQDYKNAKEDFQKAQSLNPEN-----VYPYIQLACLLYKQ-----------GKFTESEAFFN 368 (537)
T ss_dssp CTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC-----SHHHHHHHHHHHHT-----------TCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHc-----------CCHHHHHHHHH
Confidence 9999999998887765 4789999999999999976544 46889999998765 67999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHc----------cCHHHH
Q 013375 307 SAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQ----------KRYEDA 371 (444)
Q Consensus 307 ~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~----------g~~~eA 371 (444)
+++ +.+|+++.+++.+|.++...|++++|+..|+++++++|++. ...+..+|.++..+ |++++|
T Consensus 369 ~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 369 ETK-LKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp HHH-HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred HHH-HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 999 99999999999999999999999999999999999998863 12356678899999 999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhc
Q 013375 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (444)
Q Consensus 372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 425 (444)
+.+++++++.+| ++..+++.+|.++..+|++++|+..|++++++.|+..+..
T Consensus 448 ~~~~~~a~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 448 IKLLTKACELDP--RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 999999999999 8999999999999999999999999999999998776643
No 5
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.3e-33 Score=284.24 Aligned_cols=343 Identities=15% Similarity=0.097 Sum_probs=292.1
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q 013375 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR 88 (444)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~ 88 (444)
..+.++.+|.++.+.|++++|+..|.++++. .|.. ..++..+|.++...|++++|+..|++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDN-----------YIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCcc-----------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3678999999999999999999999999976 2332 35788899999999999999999999
Q ss_pred HhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCH---HHHH
Q 013375 89 ALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDP---SILD 165 (444)
Q Consensus 89 aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~---~~~~ 165 (444)
+++. +|.+.. ....++. ++...|++++|+..+ +.++...|+++ .++.
T Consensus 86 al~~----~p~~~~-~~~~l~~--------------------~~~~~g~~~~A~~~~-----~~~~~~~~~~~~~~~~~~ 135 (450)
T 2y4t_A 86 VIQL----KMDFTA-ARLQRGH--------------------LLLKQGKLDEAEDDF-----KKVLKSNPSENEEKEAQS 135 (450)
T ss_dssp HHHH----CTTCHH-HHHHHHH--------------------HHHHTTCHHHHHHHH-----HHHHTSCCCHHHHHHHHH
T ss_pred HHhc----CCCcHH-HHHHHHH--------------------HHHHcCCHHHHHHHH-----HHHHhcCCCChhhHHHHH
Confidence 9998 554432 2233443 344578899999886 55678889988 7766
Q ss_pred HH------------HHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHH
Q 013375 166 HL------------SFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPA 233 (444)
Q Consensus 166 ~l------------g~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a 233 (444)
.+ |.++...|++++|+..|++++..+|+++.+++.+|.+|...|++++|+..|++++ ..+|+++.+
T Consensus 136 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 213 (450)
T 2y4t_A 136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS--KLKNDNTEA 213 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH--HHHCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCCHHH
Confidence 55 6669999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHh------------hhhhhhhhhhhhchHHHHhhHHHH
Q 013375 234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLL------------GISLSAQSKVAITDFDRATRQAKA 301 (444)
Q Consensus 234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~l------------g~~~~~~~~~~~~~~~~~~~~~eA 301 (444)
+..++.++.. .|++++|+..++++++..|.+. .++..+ |.++.. .|++++|
T Consensus 214 ~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-----------~g~~~~A 276 (450)
T 2y4t_A 214 FYKISTLYYQ-LGDHELSLSEVRECLKLDQDHK-----RCFAHYKQVKKLNKLIESAEELIR-----------DGRYTDA 276 (450)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHHHHHHHHHHHH-----------HTCHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCChH-----HHHHHHHHHHHHHHHHHHHHHHHH-----------cCCHHHH
Confidence 9988887654 7899999999999999765542 233333 555543 4789999
Q ss_pred HHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Q 013375 302 LQALVSAARSTNMRDLS----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (444)
Q Consensus 302 ~~~~~~al~~~~P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~ 377 (444)
+..|++++ .++|+++. ++..+|.++.+.|++++|+..++++++++|++ ..+|..+|.++...|++++|+.++++
T Consensus 277 ~~~~~~~l-~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 277 TSKYESVM-KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN-VNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp HHHHHHHH-HHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999 99999965 78999999999999999999999999999999 59999999999999999999999999
Q ss_pred HHhhcCCCCcHHHHHHHHHHH------------HHhC-----CHHHHHHHHHH-HHHHHHhhhh
Q 013375 378 ALDQTGKWEQGELLRTKAKVQ------------LVQG-----QLKGAVETYTH-LLAALQVQTK 423 (444)
Q Consensus 378 al~~~P~~~~~~~~~~la~~~------------~~~g-----~~~~A~~~~~~-al~l~~~~~~ 423 (444)
+++++| ++..++..++.+. ..+| ..+++...|++ ++..+|+...
T Consensus 355 al~~~p--~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 355 AQEHNE--NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp HHTTSS--SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCC
T ss_pred HHHhCc--chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCC
Confidence 999999 8999999999553 3444 66788999997 7888887653
No 6
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=7.3e-33 Score=268.68 Aligned_cols=332 Identities=15% Similarity=0.091 Sum_probs=241.4
Q ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 013375 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (444)
Q Consensus 10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (444)
.+.++.+|.++...|++++|+..|.++++. .|.. ..++..+|.++...|++++|+..|+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~ 63 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDN-----------YIAYYRRATVFLAMGKSKAALPDLTKV 63 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------Cccc-----------HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 578889999999999999999999999876 2332 247788889999999999999999999
Q ss_pred hCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCC---CCHHHHHH
Q 013375 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIE---WDPSILDH 166 (444)
Q Consensus 90 L~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p---~~~~~~~~ 166 (444)
++. +|.+.. ....++.. +...|++++|+..+ +.++...| +++.++..
T Consensus 64 ~~~----~~~~~~-~~~~l~~~--------------------~~~~~~~~~A~~~~-----~~~~~~~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 64 IAL----KMDFTA-ARLQRGHL--------------------LLKQGKLDEAEDDF-----KKVLKSNPSEQEEKEAESQ 113 (359)
T ss_dssp HHH----CTTCHH-HHHHHHHH--------------------HHHHTCHHHHHHHH-----HHHHTSCCCHHHHHHHHHH
T ss_pred HHh----CCCcch-HHHHHHHH--------------------HHHcCChHHHHHHH-----HHHHhcCCcccChHHHHHH
Confidence 988 444322 12333333 33356778887765 44567778 77777777
Q ss_pred H------------HHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH
Q 013375 167 L------------SFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (444)
Q Consensus 167 l------------g~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~ 234 (444)
+ |.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++ ..+|+++.++
T Consensus 114 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~ 191 (359)
T 3ieg_A 114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS--KLKSDNTEAF 191 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--TTCSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCCHHHH
Confidence 6 5778888888888888888888888888888888888888888888888888888 7888888887
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhh-hchHHHHhhHHHHHHHHHHHHHhhC
Q 013375 235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA-ITDFDRATRQAKALQALVSAARSTN 313 (444)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~-~~~~~~~~~~~eA~~~~~~al~~~~ 313 (444)
..+|.++.. .|++++|+..++++++..|.+. .++..++.+........ .....+.|++++|+..|++++ ..+
T Consensus 192 ~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~ 264 (359)
T 3ieg_A 192 YKISTLYYQ-LGDHELSLSEVRECLKLDQDHK-----RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM-KTE 264 (359)
T ss_dssp HHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHhhCccch-----HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcC
Confidence 777766544 5778888888888888654432 23333322211110000 011245677888888888888 888
Q ss_pred CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013375 314 MRDLS----ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (444)
Q Consensus 314 P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~ 389 (444)
|+++. ++..+|.++...|++++|+..|+++++++|++ ..+|..+|.++...|++++|+.+|+++++.+| ++..
T Consensus 265 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~ 341 (359)
T 3ieg_A 265 PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN-VNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE--NDQQ 341 (359)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCHH
T ss_pred CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CChH
Confidence 88774 35567888888888888888888888888887 48888888888888888888888888888888 7777
Q ss_pred HHHHHHHHHHHhC
Q 013375 390 LLRTKAKVQLVQG 402 (444)
Q Consensus 390 ~~~~la~~~~~~g 402 (444)
++..++.+...++
T Consensus 342 ~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 342 IREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777665543
No 7
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=285.94 Aligned_cols=372 Identities=15% Similarity=0.057 Sum_probs=275.9
Q ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCC-CCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q 013375 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEG-FPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR 88 (444)
Q Consensus 10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~ 88 (444)
+..++.+|.++..+|++++|++.|++++++..+..+.. .|. ...++..+|.+|...|++++|+..|++
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~-----------~~~~~~nla~~y~~~g~~~~A~~~~~k 119 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR-----------SLVTWGNYAWVYYHMGRLSDVQIYVDK 119 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT-----------THHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH-----------HHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34577899999999999999999999998865533221 222 234678899999999999999999999
Q ss_pred HhCcCC-C---CChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHH
Q 013375 89 ALLPCW-N---LDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSIL 164 (444)
Q Consensus 89 aL~~~~-~---~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~ 164 (444)
++++.+ . ..+.. ..+....+..++. ...+++++|+..+ +.++..+|++++++
T Consensus 120 a~~i~~~~~~~~~~~~-~~~~~~~g~~~~~------------------~~~~~y~~A~~~~-----~kal~~~p~~~~~~ 175 (472)
T 4g1t_A 120 VKHVCEKFSSPYRIES-PELDCEEGWTRLK------------------CGGNQNERAKVCF-----EKALEKKPKNPEFT 175 (472)
T ss_dssp HHHHHHHSCCSSCCCC-HHHHHHHHHHHHH------------------HCTTHHHHHHHHH-----HHHHHHSTTCHHHH
T ss_pred HHHHhHhcccccchhh-HHHHHHHHHHHHH------------------HccccHHHHHHHH-----HHHHHhCCCCHHHH
Confidence 998711 0 11111 1112223332222 1245799999986 55678899999999
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC----CCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013375 165 DHLSFAFS---IAGDLSSLATQIEELLPGIINRKERYHILALCYYGA----GEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (444)
Q Consensus 165 ~~lg~~l~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~----g~~~~A~~~~~~al~~~~~P~~~~a~~~~ 237 (444)
..+|.++. ..|+.++|++.|+++++++|+++.++..+|..+... |++++|+..|++++ ..+|+++.++..+
T Consensus 176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al--~~~~~~~~~~~~l 253 (472)
T 4g1t_A 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL--EKAPGVTDVLRSA 253 (472)
T ss_dssp HHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHH--HHCSSCHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--HhCccHHHHHHHH
Confidence 99998855 467889999999999999999999999999877664 67889999999999 8999999999988
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhc--------hHHHHhhHHHHHHHHHHHH
Q 013375 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT--------DFDRATRQAKALQALVSAA 309 (444)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~--------~~~~~~~~~eA~~~~~~al 309 (444)
|.++ ...|++++|+..++++++..|.+ ..+++.+|.+|..++..... .....+.+++|+..|++++
T Consensus 254 g~~~-~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 327 (472)
T 4g1t_A 254 AKFY-RRKDEPDKAIELLKKALEYIPNN-----AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD 327 (472)
T ss_dssp HHHH-HHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHcCchHHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 8775 45799999999999999976554 57889999998765433211 1123456789999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh--HHHHHHHHH-HHHccCHHHHHHHHHHHHhhcCC--
Q 013375 310 RSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL--KGWLLMARI-LSAQKRYEDAETILNAALDQTGK-- 384 (444)
Q Consensus 310 ~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~--~~~~~la~~-l~~~g~~~eA~~~~~~al~~~P~-- 384 (444)
.++|+++.+++++|.++...|++++|+..|+++++++|++.. ..+..+|.+ +..+|++++|+..|++++++.|+
T Consensus 328 -~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 328 -EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp -HHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred -hcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 999999999999999999999999999999999999988521 235666654 45779999999999999876541
Q ss_pred --------------------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhc
Q 013375 385 --------------------WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (444)
Q Consensus 385 --------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 425 (444)
++++.+|.++|.++..+|++++|+++|+++|++.+..++..
T Consensus 407 ~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 407 EKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 05678899999999999999999999999999988776643
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-32 Score=288.01 Aligned_cols=355 Identities=14% Similarity=0.056 Sum_probs=299.2
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHH---------------------------HH
Q 013375 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQ---------------------------ET 61 (444)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~---------------------------~~ 61 (444)
....|+.+|.+|.+.|++++|++.|+++++.. |.....+..+. ..
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVD--------AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF 270 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH
Confidence 46789999999999999999999999999763 22211000000 00
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHH
Q 013375 62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA 141 (444)
Q Consensus 62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA 141 (444)
....+..++..|.+.|++++|+..|+++++.+ .++. ....++. .+...|++++|
T Consensus 271 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~l~~--------------------~~~~~g~~~~A 324 (597)
T 2xpi_A 271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGLE--KSSD----LLLCKAD--------------------TLFVRSRFIDV 324 (597)
T ss_dssp HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGG--GCHH----HHHHHHH--------------------HHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHhhcCC--chHH----HHHHHHH--------------------HHHHhcCHHHH
Confidence 11112223556778899999999999999862 1221 1233333 34457889999
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHh
Q 013375 142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTL 221 (444)
Q Consensus 142 i~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~a 221 (444)
+..+ +.++...|++..++..++.++...|++++|+..|++++..+|+++.+|+.+|.+|...|++++|+..|+++
T Consensus 325 ~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 325 LAIT-----TKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp HHHH-----HHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH-----HHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9886 45667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHH
Q 013375 222 LSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKA 301 (444)
Q Consensus 222 l~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA 301 (444)
+ ..+|+++.++..++.++. ..|++++|+..|+++++..|++ ..++..+|.+|... |++++|
T Consensus 400 ~--~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~-----------g~~~~A 460 (597)
T 2xpi_A 400 S--TMDPQFGPAWIGFAHSFA-IEGEHDQAISAYTTAARLFQGT-----HLPYLFLGMQHMQL-----------GNILLA 460 (597)
T ss_dssp H--HHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTTTC-----SHHHHHHHHHHHHH-----------TCHHHH
T ss_pred H--HhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccc-----hHHHHHHHHHHHHc-----------CCHHHH
Confidence 9 899999999988887764 4789999999999999965543 46888899988764 679999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------cCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013375 302 LQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL------EGGSNLKGWLLMARILSAQKRYEDAETIL 375 (444)
Q Consensus 302 ~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~P~~~~~~~~~la~~l~~~g~~~eA~~~~ 375 (444)
++.|++++ +.+|+++.+++.+|.++.+.|++++|++.|++++++ +|+....+|..+|.++...|++++|+..+
T Consensus 461 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 461 NEYLQSSY-ALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHH-HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHH-HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999 999999999999999999999999999999999999 55531379999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 376 ~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
+++++..| ++..+|..+|.++...|++++|+..|++++++.|++...
T Consensus 540 ~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 586 (597)
T 2xpi_A 540 NQGLLLST--NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586 (597)
T ss_dssp HHHHHHSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence 99999999 899999999999999999999999999999999987653
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=8.6e-32 Score=270.92 Aligned_cols=311 Identities=12% Similarity=0.053 Sum_probs=274.4
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHH
Q 013375 62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA 141 (444)
Q Consensus 62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA 141 (444)
...++..+|..+.+.|++++|+..|+++++. +|.+.. ....++.. +...|++++|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~-~~~~l~~~--------------------~~~~g~~~~A 79 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYI-AYYRRATV--------------------FLAMGKSKAA 79 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHH-HHHHHHHH--------------------HHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHH-HHHHHHHH--------------------HHHCCCHHHH
Confidence 4567888899999999999999999999998 544322 22334433 3456789999
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH---HHHHHH------------HHHHH
Q 013375 142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK---ERYHIL------------ALCYY 206 (444)
Q Consensus 142 i~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~l~ 206 (444)
+..+ +.++...|+++.++..+|.++...|++++|+..|++++..+|+++ .+|..+ |.++.
T Consensus 80 ~~~~-----~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 80 LPDL-----TKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp HHHH-----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9886 556788899999999999999999999999999999999999999 887766 66699
Q ss_pred HCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhh
Q 013375 207 GAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (444)
Q Consensus 207 ~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (444)
..|++++|+..|++++ ..+|+++.++..++.++. ..|++++|+..|+++++..|.+ ..+++.+|.++...
T Consensus 155 ~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~-- 224 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKIL--EVCVWDAELRELRAECFI-KEGEPRKAISDLKAASKLKNDN-----TEAFYKISTLYYQL-- 224 (450)
T ss_dssp HHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHH-HTTCGGGGHHHHHHHHHHHCSC-----HHHHHHHHHHHHHT--
T ss_pred HcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHc--
Confidence 9999999999999999 899999999998887765 4789999999999999976554 57889999998765
Q ss_pred hhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhcCCCC---
Q 013375 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL------------SLEYAEQRKLNAAHYYAKMLLKLEGGSN--- 351 (444)
Q Consensus 287 ~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~l------------g~~~~~~g~~~~A~~~~~~al~l~P~~~--- 351 (444)
|++++|+..|++++ .++|+++..+..+ |.++...|++++|+..|+++++++|+++
T Consensus 225 ---------g~~~~A~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 294 (450)
T 2y4t_A 225 ---------GDHELSLSEVRECL-KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT 294 (450)
T ss_dssp ---------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHH
T ss_pred ---------CCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHH
Confidence 67999999999999 9999999998777 9999999999999999999999999973
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 352 ~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
...+..+|.++...|++++|+..++++++.+| ++..+|+.+|.++...|++++|+..|++++++.|++...
T Consensus 295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQMEP--DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 13788999999999999999999999999999 899999999999999999999999999999998876553
No 10
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-31 Score=280.09 Aligned_cols=327 Identities=11% Similarity=-0.006 Sum_probs=275.5
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhh---------------hcCCCCCCcc---
Q 013375 63 NRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLY---------------CGGETCPPNL--- 124 (444)
Q Consensus 63 ~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~---------------~~~~~~~~~~--- 124 (444)
..++..+|.+|.+.|++++|+..|+++++. +|.+...+ ..++...+. ......+...
T Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~-~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMV----DAKCYEAF-DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHH-HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CchhhHHH-HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence 467888999999999999999999999998 44432221 111111100 0000000000
Q ss_pred ccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 013375 125 RSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALC 204 (444)
Q Consensus 125 ~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 204 (444)
...+...|...|++++|+..+ +.++.. |.++.++..++.++...|++++|+..|+++++.+|++..+|..++.+
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~-----~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 348 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYL-----SSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLAS 348 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHH-----HTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHH-----HHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHH
Confidence 012356788889999999876 333444 78999999999999999999999999999999999999999999999
Q ss_pred HHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhh
Q 013375 205 YYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ 284 (444)
Q Consensus 205 l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 284 (444)
+...|++++|+..|++++ ..+|+++.++..++.++. ..|++++|+..|+++++..|.+ ..+|..+|.+|...
T Consensus 349 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~ 420 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLV--DRHPEKAVTWLAVGIYYL-CVNKISEARRYFSKSSTMDPQF-----GPAWIGFAHSFAIE 420 (597)
T ss_dssp HHHHTCHHHHHHHHHHHH--HHCTTSHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH--hhCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHc
Confidence 999999999999999999 899999999988887765 4799999999999999965443 46889999998764
Q ss_pred hhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 013375 285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA 364 (444)
Q Consensus 285 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~ 364 (444)
|++++|++.|++++ +.+|+++.+++.+|.++...|++++|++.|+++++++|++ ..+|..+|.++..
T Consensus 421 -----------g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 487 (597)
T 2xpi_A 421 -----------GEHDQAISAYTTAA-RLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD-PLLLNELGVVAFN 487 (597)
T ss_dssp -----------TCHHHHHHHHHHHH-HTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHH
T ss_pred -----------CCHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHH
Confidence 67999999999999 9999999999999999999999999999999999999999 5999999999999
Q ss_pred ccCHHHHHHHHHHHHhh------cCCCCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 365 QKRYEDAETILNAALDQ------TGKWEQ-GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 365 ~g~~~eA~~~~~~al~~------~P~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
.|++++|+..|+++++. +| ++ ..+|..+|.++...|++++|+..|++++++.|++..
T Consensus 488 ~g~~~~A~~~~~~~~~~~~~~~~~p--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 488 KSDMQTAINHFQNALLLVKKTQSNE--KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCS--GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred hCCHHHHHHHHHHHHHhhhccccch--hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 99999999999999998 56 44 789999999999999999999999999999876543
No 11
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=3.6e-32 Score=266.10 Aligned_cols=310 Identities=14% Similarity=0.053 Sum_probs=250.0
Q ss_pred HHHHHHHHHHHhCChHHHHH-HHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHH
Q 013375 65 AVELLPELWKLADAPRETIM-SYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAIL 143 (444)
Q Consensus 65 a~~~l~~~~~~~g~~~eA~~-~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~ 143 (444)
.....+..+...|++++|+. .|++++...+..+..... ....++. .+...|++++|+.
T Consensus 27 ~~~~~~~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~-~~~~~~~--------------------~~~~~g~~~~A~~ 85 (368)
T 1fch_A 27 MAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHP-QPFEEGL--------------------RRLQEGDLPNAVL 85 (368)
T ss_dssp -------------------CHHHHCCCCCCSSCTTTTCS-SHHHHHH--------------------HHHHTTCHHHHHH
T ss_pred HHcCCchhhHHHHHHHHHHhhhhhHHHhcCCCCcccchH-HHHHHHH--------------------HHHHCCCHHHHHH
Confidence 33334456778899999999 999999882221100000 0122332 3445788999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhc
Q 013375 144 LLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLS 223 (444)
Q Consensus 144 ~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~ 223 (444)
.+ +.++...|+++.++..+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|++++
T Consensus 86 ~~-----~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 159 (368)
T 1fch_A 86 LF-----EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL- 159 (368)
T ss_dssp HH-----HHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HH-----HHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Confidence 86 556788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHH---------------HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhh
Q 013375 224 GSEDPKCLPALLIA---------------SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA 288 (444)
Q Consensus 224 ~~~~P~~~~a~~~~---------------~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~ 288 (444)
..+|++..++... .+.++ ..|++++|+..++++++..|... ...++..+|.++...
T Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~---~~~~~~~l~~~~~~~---- 230 (368)
T 1fch_A 160 -RYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI---DPDVQCGLGVLFNLS---- 230 (368)
T ss_dssp -HTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC---CHHHHHHHHHHHHHT----
T ss_pred -HhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc---cHHHHHHHHHHHHHc----
Confidence 8999988766421 23334 57899999999999999765521 256888999998764
Q ss_pred hchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCH
Q 013375 289 ITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY 368 (444)
Q Consensus 289 ~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~ 368 (444)
|++++|+..|++++ .++|+++.+++++|.++...|++++|+..|+++++++|++ ..+|..+|.++..+|++
T Consensus 231 -------g~~~~A~~~~~~al-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 231 -------GEYDKAVDCFTAAL-SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-IRSRYNLGISCINLGAH 301 (368)
T ss_dssp -------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCH
T ss_pred -------CCHHHHHHHHHHHH-HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCH
Confidence 67999999999999 9999999999999999999999999999999999999999 59999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCc-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375 369 EDAETILNAALDQTGKWEQ-----------GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 369 ~eA~~~~~~al~~~P~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~ 421 (444)
++|+.+++++++..| ++ ..+|..+|.++..+|++++|...++++++..++.
T Consensus 302 ~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 363 (368)
T 1fch_A 302 REAVEHFLEALNMQR--KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM 363 (368)
T ss_dssp HHHHHHHHHHHHHHH--TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHh
Confidence 999999999999999 66 8999999999999999999999999999887643
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.8e-31 Score=251.91 Aligned_cols=289 Identities=13% Similarity=0.027 Sum_probs=249.2
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHH
Q 013375 65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILL 144 (444)
Q Consensus 65 a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~ 144 (444)
.+..++..+...|++++|+..|+++++. +|.+... ...++.. +...|++++|+..
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~-~~~~~~~--------------------~~~~~~~~~A~~~ 78 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEK----DPFHASC-LPVHIGT--------------------LVELNKANELFYL 78 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTTT-HHHHHHH--------------------HHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCChhh-HHHHHHH--------------------HHHhhhHHHHHHH
Confidence 4455667888999999999999999998 4433211 1122222 2335688999887
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhc
Q 013375 145 LMILLRKVALKRIEWDPSILDHLSFAFSIAG-DLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLS 223 (444)
Q Consensus 145 l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~ 223 (444)
+ +.++...|+++.++..+|.++...| ++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++
T Consensus 79 ~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~- 152 (330)
T 3hym_B 79 S-----HKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAA- 152 (330)
T ss_dssp H-----HHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHH-
T ss_pred H-----HHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH-
Confidence 5 4566788999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHH
Q 013375 224 GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ 303 (444)
Q Consensus 224 ~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~ 303 (444)
...|++..++..++.++. ..|++++|+.+++++++..|.+ ..+++.+|.++... |++++|+.
T Consensus 153 -~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~-----~~~~~~l~~~~~~~-----------~~~~~A~~ 214 (330)
T 3hym_B 153 -QLMKGCHLPMLYIGLEYG-LTNNSKLAERFFSQALSIAPED-----PFVMHEVGVVAFQN-----------GEWKTAEK 214 (330)
T ss_dssp -HHTTTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTC-----HHHHHHHHHHHHHT-----------TCHHHHHH
T ss_pred -HhccccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHc-----------ccHHHHHH
Confidence 899999999888877765 4789999999999999965543 56888999998764 67999999
Q ss_pred HHHHHHHhhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH
Q 013375 304 ALVSAARSTN---------MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI 374 (444)
Q Consensus 304 ~~~~al~~~~---------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~ 374 (444)
.|++++ .+. |.++.+++++|.++...|++++|+..|+++++++|++. .+|..+|.++..+|++++|+.+
T Consensus 215 ~~~~a~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 215 WFLDAL-EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA-STYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp HHHHHH-HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS-HHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHH-HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch-HHHHHHHHHHHHhccHHHHHHH
Confidence 999999 887 88889999999999999999999999999999999995 9999999999999999999999
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHH-HHhCCHHH
Q 013375 375 LNAALDQTGKWEQGELLRTKAKVQ-LVQGQLKG 406 (444)
Q Consensus 375 ~~~al~~~P~~~~~~~~~~la~~~-~~~g~~~~ 406 (444)
++++++.+| ++..++..+|.++ ...|+.+.
T Consensus 293 ~~~al~~~p--~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 293 FHTALGLRR--DDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp HHTTTTTCS--CCHHHHHHHHHHHHTTTTC---
T ss_pred HHHHHccCC--CchHHHHHHHHHHHHHhCchhc
Confidence 999999999 8999999999988 56666543
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.98 E-value=2e-30 Score=249.12 Aligned_cols=266 Identities=11% Similarity=0.050 Sum_probs=244.7
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC-
Q 013375 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG- 209 (444)
Q Consensus 131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g- 209 (444)
.+...|++++|+..+ +.++..+|.++.++..++.++...|++++|+..++++++.+|+++.+|+.+|.++...|
T Consensus 31 ~~~~~g~~~~A~~~~-----~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (330)
T 3hym_B 31 RHYYNCDFKMCYKLT-----SVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGH 105 (330)
T ss_dssp HHHHTTCHHHHHHHH-----HHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCS
T ss_pred HHHHcCCHHHHHHHH-----HHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhh
Confidence 344568999999876 55678899999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhh
Q 013375 210 EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAI 289 (444)
Q Consensus 210 ~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~ 289 (444)
++++|+..|++++ ..+|+++.++..+|.++. ..|++++|+..++++++..|.+ ..+++.+|.++...
T Consensus 106 ~~~~A~~~~~~a~--~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~----- 172 (330)
T 3hym_B 106 KNEHARRYLSKAT--TLEKTYGPAWIAYGHSFA-VESEHDQAMAAYFTAAQLMKGC-----HLPMLYIGLEYGLT----- 172 (330)
T ss_dssp CHHHHHHHHHHHH--TTCTTCTHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTC-----SHHHHHHHHHHHHT-----
T ss_pred hHHHHHHHHHHHH--HhCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHH-----
Confidence 9999999999999 899999999998887765 4789999999999999976554 46788899988764
Q ss_pred chHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---------CCCChHHHHHHHH
Q 013375 290 TDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE---------GGSNLKGWLLMAR 360 (444)
Q Consensus 290 ~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---------P~~~~~~~~~la~ 360 (444)
|++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..+++++++. |... .+|..+|.
T Consensus 173 ------~~~~~A~~~~~~al-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~la~ 244 (330)
T 3hym_B 173 ------NNSKLAERFFSQAL-SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE-PLLNNLGH 244 (330)
T ss_dssp ------TCHHHHHHHHHHHH-TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC-HHHHHHHH
T ss_pred ------hhHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH-HHHHHHHH
Confidence 67999999999999 9999999999999999999999999999999999997 6664 89999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375 361 ILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 361 ~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
++..+|++++|+.+++++++..| ++..+++.+|.++..+|++++|+..|++++++.|++...
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIP--QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhhCc--cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH
Confidence 99999999999999999999999 899999999999999999999999999999998876553
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.98 E-value=7.4e-29 Score=240.39 Aligned_cols=304 Identities=11% Similarity=0.058 Sum_probs=253.0
Q ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 013375 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (444)
Q Consensus 10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (444)
.++++.+|.++..+|++++|+..|+++++. .|.. ..++..+|.++...|++++|+..|+++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~ 97 (359)
T 3ieg_A 37 YIAYYRRATVFLAMGKSKAALPDLTKVIAL--------KMDF-----------TAARLQRGHLLLKQGKLDEAEDDFKKV 97 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCc-----------chHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 468999999999999999999999999987 2332 257889999999999999999999999
Q ss_pred hCcCCCCCh---HHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013375 90 LLPCWNLDA---ETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDH 166 (444)
Q Consensus 90 L~~~~~~~~---~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~ 166 (444)
++. +| .+.... ..++....... ....+..+...|++++|+..+ +.++...|.++.++..
T Consensus 98 ~~~----~~~~~~~~~~~-~~l~~~~~~~~--------~~~~a~~~~~~~~~~~A~~~~-----~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 98 LKS----NPSEQEEKEAE-SQLVKADEMQR--------LRSQALDAFDGADYTAAITFL-----DKILEVCVWDAELREL 159 (359)
T ss_dssp HTS----CCCHHHHHHHH-HHHHHHHHHHH--------HHHHHHHHHHTTCHHHHHHHH-----HHHHHHCTTCHHHHHH
T ss_pred Hhc----CCcccChHHHH-HHHHHHHHHHH--------HHHHHHHHHHccCHHHHHHHH-----HHHHHhCCCchHHHHH
Confidence 999 66 443322 22211100000 011123456678999999986 5567888999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH---------
Q 013375 167 LSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA--------- 237 (444)
Q Consensus 167 lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~--------- 237 (444)
+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++ ..+|++..++...
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL--KLDQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 8999998865432
Q ss_pred ---HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC
Q 013375 238 ---SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (444)
Q Consensus 238 ---~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P 314 (444)
+.++ ...|++++|+..++++++..|.+ ......++..+|.++... |++++|+..|++++ +.+|
T Consensus 238 ~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~-~~~~ 303 (359)
T 3ieg_A 238 IESAEEL-IRDGRYTDATSKYESVMKTEPSV-AEYTVRSKERICHCFSKD-----------EKPVEAIRICSEVL-QMEP 303 (359)
T ss_dssp HHHHHHH-HHTTCHHHHHHHHHHHHHHCCSS-HHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCT
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-HhCc
Confidence 4444 45799999999999999976543 334456788899998764 68999999999999 9999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccC
Q 013375 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR 367 (444)
Q Consensus 315 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~ 367 (444)
+++.+++.+|.++...|++++|+..|+++++++|++ ..++..++.+...+++
T Consensus 304 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND-QQIREGLEKAQRLLKQ 355 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 4999999888766553
No 15
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.1e-29 Score=257.10 Aligned_cols=239 Identities=13% Similarity=0.020 Sum_probs=217.8
Q ss_pred cCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 013375 128 MGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYG 207 (444)
Q Consensus 128 ~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 207 (444)
++..+...|++++|+..+ +.++...|. +.++..+|.++...|++++|+..|++++..+|+++.+|+.+|.++..
T Consensus 243 ~~~~~~~~~~~~~A~~~~-----~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDI-----KKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHSSCHHHHHHHH-----HHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH-----HHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH
Confidence 345677789999999876 456678899 99999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhh
Q 013375 208 AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKV 287 (444)
Q Consensus 208 ~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~ 287 (444)
.|++++|+..|++++ ..+|+++.++..++.++ ...|++++|+..++++++..|.+ ..+++.+|.++...
T Consensus 317 ~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~--- 385 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAK--ELDPENIFPYIQLACLA-YRENKFDDCETLFSEAKRKFPEA-----PEVPNFFAEILTDK--- 385 (514)
T ss_dssp TTCTTHHHHHHHHHH--HTCSSCSHHHHHHHHHT-TTTTCHHHHHHHHHHHHHHSTTC-----SHHHHHHHHHHHHT---
T ss_pred hCCHHHHHHHHHHHH--HhChhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHcccC-----HHHHHHHHHHHHHC---
Confidence 999999999999999 89999999998887765 56799999999999999976544 46788999998764
Q ss_pred hhchHHHHhhHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHhhcCCCChHHHHHH
Q 013375 288 AITDFDRATRQAKALQALVSAARSTNMRDLS------ILYRLSLEYAE---QRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (444)
Q Consensus 288 ~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~------a~~~lg~~~~~---~g~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (444)
|++++|+..|++++ ..+|+++. +++.+|.++.. .|++++|+..|++++.++|++ ..+|..+
T Consensus 386 --------~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l 455 (514)
T 2gw1_A 386 --------NDFDKALKQYDLAI-ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS-EQAKIGL 455 (514)
T ss_dssp --------TCHHHHHHHHHHHH-HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred --------CCHHHHHHHHHHHH-HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc-HHHHHHH
Confidence 67999999999999 99999966 99999999999 999999999999999999999 5999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013375 359 ARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (444)
Q Consensus 359 a~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la 395 (444)
|.++...|++++|+.+|+++++.+| ++..++..+.
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~ 490 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLAR--TMEEKLQAIT 490 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS--SHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhcc--ccHHHHHHHH
Confidence 9999999999999999999999999 8888877663
No 16
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=3.3e-31 Score=262.69 Aligned_cols=246 Identities=11% Similarity=0.045 Sum_probs=225.7
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC-chHHHHHHHHhhcCCCCCCChH
Q 013375 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE-DLVALNLLRTLLSGSEDPKCLP 232 (444)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~-~~~A~~~~~~al~~~~~P~~~~ 232 (444)
+..+|+++++|..+|.++...|++++|+..|+++++++|++..+|+++|.++..+|+ +++|+..|++++ .++|+++.
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al--~l~P~~~~ 167 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII--EEQPKNYQ 167 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH--HHCTTCHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH--HHCCCCHH
Confidence 466788999999999999999999999999999999999999999999999999997 999999999999 89999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh
Q 013375 233 ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST 312 (444)
Q Consensus 233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~ 312 (444)
+++.+|.++. ..|++++|+.+|+++|++.|.+ ..+|+++|.++... |++++|+..|++++ ++
T Consensus 168 a~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~~-----~~a~~~lg~~~~~~-----------g~~~eAl~~~~~al-~l 229 (382)
T 2h6f_A 168 VWHHRRVLVE-WLRDPSQELEFIADILNQDAKN-----YHAWQHRQWVIQEF-----------KLWDNELQYVDQLL-KE 229 (382)
T ss_dssp HHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHH-----------TCCTTHHHHHHHHH-HH
T ss_pred HHHHHHHHHH-HccCHHHHHHHHHHHHHhCccC-----HHHHHHHHHHHHHc-----------CChHHHHHHHHHHH-Hh
Confidence 9999887764 5789999999999999976554 67999999999765 57899999999999 99
Q ss_pred CCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhhcCCCChHHHHHHHHHHHHcc--CHHHHHHHHHHHHhhcCC
Q 013375 313 NMRDLSILYRLSLEYAE-QRKLNAA-----HYYAKMLLKLEGGSNLKGWLLMARILSAQK--RYEDAETILNAALDQTGK 384 (444)
Q Consensus 313 ~P~~~~a~~~lg~~~~~-~g~~~~A-----~~~~~~al~l~P~~~~~~~~~la~~l~~~g--~~~eA~~~~~~al~~~P~ 384 (444)
+|+++.+|+++|.++.. .|.+++| +.+|+++++++|++ ..+|+++|.++..+| ++++|+..++++ +..|
T Consensus 230 ~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~-~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p- 306 (382)
T 2h6f_A 230 DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN-ESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH- 306 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-
T ss_pred CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-
Confidence 99999999999999999 5665888 59999999999999 599999999999988 699999999998 8899
Q ss_pred CCcHHHHHHHHHHHHHhC--------C-HHHHHHHHHHH-HHHHHhhhh
Q 013375 385 WEQGELLRTKAKVQLVQG--------Q-LKGAVETYTHL-LAALQVQTK 423 (444)
Q Consensus 385 ~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~l~~~~~~ 423 (444)
++..++..+|.++..+| + +++|+..|+++ +++.|.+.+
T Consensus 307 -~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~ 354 (382)
T 2h6f_A 307 -SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKE 354 (382)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred -CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHH
Confidence 89999999999999985 2 58999999999 888887765
No 17
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=1e-29 Score=243.77 Aligned_cols=267 Identities=15% Similarity=0.052 Sum_probs=240.5
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Q 013375 130 SSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG 209 (444)
Q Consensus 130 ~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g 209 (444)
..+...|++++|+..+ +.++...|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|
T Consensus 29 ~~~~~~~~~~~A~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 29 LSMLKLANLAEAALAF-----EAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHTTCHHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHH-----HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 3455678999999876 55677889999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhhcCCCCCCChHHHHHH--------------HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH
Q 013375 210 EDLVALNLLRTLLSGSEDPKCLPALLIA--------------SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC 275 (444)
Q Consensus 210 ~~~~A~~~~~~al~~~~~P~~~~a~~~~--------------~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~ 275 (444)
++++|+..|++++ ..+|++..++... +..++...|++++|+.+++++++..|.+ ..++.
T Consensus 104 ~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~ 176 (327)
T 3cv0_A 104 NANAALASLRAWL--LSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND-----AQLHA 176 (327)
T ss_dssp CHHHHHHHHHHHH--HTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTC-----HHHHH
T ss_pred CHHHHHHHHHHHH--HhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC-----HHHHH
Confidence 9999999999999 8999988777654 3313556789999999999999975543 56888
Q ss_pred HhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHH
Q 013375 276 LLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW 355 (444)
Q Consensus 276 ~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 355 (444)
.+|.++... |++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..|+++++++|++ ..+|
T Consensus 177 ~la~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~ 243 (327)
T 3cv0_A 177 SLGVLYNLS-----------NNYDSAAANLRRAV-ELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY-VRVM 243 (327)
T ss_dssp HHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred HHHHHHHHh-----------ccHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHH
Confidence 999988764 67999999999999 9999999999999999999999999999999999999998 5999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcCCCC------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 356 LLMARILSAQKRYEDAETILNAALDQTGKWE------------QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 356 ~~la~~l~~~g~~~eA~~~~~~al~~~P~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
..+|.++..+|++++|+.++++++...| + +..++..+|.++..+|++++|...+++++++.|+..+
T Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 244 YNMAVSYSNMSQYDLAAKQLVRAIYMQV--GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHT--TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC--ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 9999999999999999999999999999 7 7899999999999999999999999999999997655
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=2.2e-30 Score=254.04 Aligned_cols=263 Identities=16% Similarity=0.107 Sum_probs=221.2
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Q 013375 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGE 210 (444)
Q Consensus 131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~ 210 (444)
.+...|++++|+..+ +.++...|+++.++..+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|+
T Consensus 74 ~~~~~g~~~~A~~~~-----~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 148 (365)
T 4eqf_A 74 KRLKEGDLPVTILFM-----EAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH 148 (365)
T ss_dssp HHHHHTCHHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHH-----HHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc
Confidence 344567899999876 556778899999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCCCCCChHHHHHH----------HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhh
Q 013375 211 DLVALNLLRTLLSGSEDPKCLPALLIA----------SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGIS 280 (444)
Q Consensus 211 ~~~A~~~~~~al~~~~~P~~~~a~~~~----------~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 280 (444)
+++|+..|++++ .++|++..++... +. ++...|++++|+.+++++++..|... ...+++.+|.+
T Consensus 149 ~~~A~~~~~~al--~~~p~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~l~~~ 222 (365)
T 4eqf_A 149 QQDACEALKNWI--KQNPKYKYLVKNKKGSPGLTRRMSK-SPVDSSVLEGVKELYLEAAHQNGDMI---DPDLQTGLGVL 222 (365)
T ss_dssp HHHHHHHHHHHH--HHCHHHHCC--------------------CCHHHHHHHHHHHHHHHHSCSSC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhCccchHHHhhhccchHHHHHHHH-HHhhhhhHHHHHHHHHHHHHhCcCcc---CHHHHHHHHHH
Confidence 999999999999 8899877665543 33 45668899999999999999765421 25678889988
Q ss_pred hhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 013375 281 LSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMAR 360 (444)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~ 360 (444)
+... |++++|+..|++++ +++|+++.+|+++|.++...|++++|+..|+++++++|++ ..+|.++|.
T Consensus 223 ~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~ 289 (365)
T 4eqf_A 223 FHLS-----------GEFNRAIDAFNAAL-TVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF-IRSRYNLGI 289 (365)
T ss_dssp HHHH-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred HHHC-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHH
Confidence 8664 67899999999999 9999999999999999999999999999999999999998 599999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhcCCCC----------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013375 361 ILSAQKRYEDAETILNAALDQTGKWE----------QGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (444)
Q Consensus 361 ~l~~~g~~~eA~~~~~~al~~~P~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 417 (444)
++..+|++++|+.+|+++++..|+.. +..+|..++.++..+|+.+.+....++.++.
T Consensus 290 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~ 356 (365)
T 4eqf_A 290 SCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV 356 (365)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGG
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHH
Confidence 99999999999999999999988311 3678999999999999999988877765443
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=1.2e-28 Score=253.47 Aligned_cols=308 Identities=13% Similarity=0.095 Sum_probs=253.8
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHH
Q 013375 62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA 141 (444)
Q Consensus 62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA 141 (444)
...++..+|..+...|++++|+..|+++++. +|.+.. ....++.. +...|++++|
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~-~~~~la~~--------------------~~~~g~~~~A 78 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL----DPNEPV-FYSNISAC--------------------YISTGDLEKV 78 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH----CTTCHH-HHHHHHHH--------------------HHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh----CCCCcH-HHHHHHHH--------------------HHHcCCHHHH
Confidence 4578889999999999999999999999999 555432 23344443 3446789999
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHH-----------------------
Q 013375 142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERY----------------------- 198 (444)
Q Consensus 142 i~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~----------------------- 198 (444)
+..+ +.++..+|+++.++..+|.++...|++++|+..|+ ++..+|+....+
T Consensus 79 ~~~~-----~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~ 152 (537)
T 3fp2_A 79 IEFT-----TKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSK 152 (537)
T ss_dssp HHHH-----HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHH-----HHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9986 55678899999999999999999999999999996 888888765543
Q ss_pred ---------------------------------------------HHHH--------HHHHHCCCchHHHHHHHHhhcCC
Q 013375 199 ---------------------------------------------HILA--------LCYYGAGEDLVALNLLRTLLSGS 225 (444)
Q Consensus 199 ---------------------------------------------~~la--------~~l~~~g~~~~A~~~~~~al~~~ 225 (444)
..++ ......|++++|+..|++++ .
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l--~ 230 (537)
T 3fp2_A 153 DEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL--S 230 (537)
T ss_dssp ------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH--C
T ss_pred CccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH--H
Confidence 1122 22223358999999999999 8
Q ss_pred CCCCChHH-------HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhH
Q 013375 226 EDPKCLPA-------LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQ 298 (444)
Q Consensus 226 ~~P~~~~a-------~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~ 298 (444)
.+|+++.+ +..+|.+ +...|++++|+..++++++..|. ..+++.+|.++... |++
T Consensus 231 ~~p~~~~~~~~~~~~~~~~g~~-~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~l~~~~~~~-----------~~~ 292 (537)
T 3fp2_A 231 ANTVDDPLRENAALALCYTGIF-HFLKNNLLDAQVLLQESINLHPT------PNSYIFLALTLADK-----------ENS 292 (537)
T ss_dssp --CCCHHHHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHTCCS-----------SCC
T ss_pred HCCCcchhhHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHhcCCC------chHHHHHHHHHHHh-----------cCH
Confidence 99998764 4444444 44578999999999999996443 36788999998765 578
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375 299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (444)
Q Consensus 299 ~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~a 378 (444)
++|+..|++++ ..+|+++.+++.+|.++...|++++|+..|+++++++|++. .+|..+|.++...|++++|+.+++++
T Consensus 293 ~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 293 QEFFKFFQKAV-DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV-YPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp HHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS-HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999995 99999999999999999999999999
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375 379 LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 379 l~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
++..| ++..++..+|.++...|++++|+..|++++++.|+....
T Consensus 371 ~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 371 KLKFP--TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 99999 899999999999999999999999999999999977653
No 20
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=3.4e-29 Score=253.94 Aligned_cols=352 Identities=12% Similarity=0.019 Sum_probs=267.5
Q ss_pred HHhhhh--cccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcC
Q 013375 16 KAKCLQ--GLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPC 93 (444)
Q Consensus 16 ~g~~~~--~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~ 93 (444)
.-.|++ .+++.+.++..++..|...... .+... ....+..+|.++...|++++|+..|++++++.
T Consensus 15 ~l~chf~w~l~~~~~~l~~~e~~~~~~~~~----~~~~~---------~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~ 81 (472)
T 4g1t_A 15 QLKCHFTWNLMEGENSLDDFEDKVFYRTEF----QNREF---------KATMCNLLAYLKHLKGQNEAALECLRKAEELI 81 (472)
T ss_dssp TSCSTTTSCTTTTCCCHHHHHHHHHHHTTS----CC------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhhChHHHhHHHHHHHHHHHHHHHHHHHHh----CCChh---------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 335766 5677777777777666442111 11111 12467889999999999999999999999861
Q ss_pred -----CCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHH--HHHH-hhCCCCHHHHH
Q 013375 94 -----WNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLR--KVAL-KRIEWDPSILD 165 (444)
Q Consensus 94 -----~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~--~~~l-~~~p~~~~~~~ 165 (444)
...+|.... ...++| .+|...|++++|+..+..+.. .... ...+..+.++.
T Consensus 82 ~~~~~~~~~~~~~~-~~~nla--------------------~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 82 QQEHADQAEIRSLV-TWGNYA--------------------WVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHSGGGCTTTTHH-HHHHHH--------------------HHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HhcCccccchHHHH-HHHHHH--------------------HHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 011221111 112233 355668899999987643311 1000 11345778999
Q ss_pred HHHHHHHhc--CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH---HCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 013375 166 HLSFAFSIA--GDLSSLATQIEELLPGIINRKERYHILALCYY---GAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (444)
Q Consensus 166 ~lg~~l~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~---~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (444)
.+|.++... +++++|+++|+++++++|++++++..+|.++. ..|++++|+..|++++ .++|+++.++..++..
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al--~l~p~~~~~~~~l~~~ 218 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI--RLNPDNQYLKVLLALK 218 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH--HHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh--hcCCcchHHHHHHHHH
Confidence 999888765 47999999999999999999999999998855 4688899999999999 8999999988776644
Q ss_pred H---hcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH
Q 013375 241 C---GEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (444)
Q Consensus 241 ~---~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~ 317 (444)
+ ....++.++|+.++++++...|.. ..++..+|.+|... |++++|+..|++++ +.+|+++
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~al~~~~~~-----~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~ 281 (472)
T 4g1t_A 219 LHKMREEGEEEGEGEKLVEEALEKAPGV-----TDVLRSAAKFYRRK-----------DEPDKAIELLKKAL-EYIPNNA 281 (472)
T ss_dssp HHHCC------CHHHHHHHHHHHHCSSC-----HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhCccH-----HHHHHHHHHHHHHc-----------CchHHHHHHHHHHH-HhCCChH
Confidence 3 234578889999999999965543 56889999998765 67999999999999 9999999
Q ss_pred HHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375 318 SILYRLSLEYAEQ-------------------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (444)
Q Consensus 318 ~a~~~lg~~~~~~-------------------g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~a 378 (444)
.+++++|.+|... +.+++|+..|+++++++|++. .++..+|.++..+|++++|+.+|+++
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLF-RVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTC-CCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchh-hhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 9999999998643 457889999999999999995 99999999999999999999999999
Q ss_pred HhhcCCCCcH---HHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 379 LDQTGKWEQG---ELLRTKAKV-QLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 379 l~~~P~~~~~---~~~~~la~~-~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
++..| ++. .+++.+|.+ +...|++++|+..|++++++.|+...
T Consensus 361 L~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~ 407 (472)
T 4g1t_A 361 FSKEL--TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE 407 (472)
T ss_dssp HHSCC--CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred HhcCC--CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence 99998 543 346677765 45789999999999999999876543
No 21
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.97 E-value=1.7e-29 Score=230.86 Aligned_cols=211 Identities=19% Similarity=0.112 Sum_probs=176.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013375 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (444)
Q Consensus 158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~ 237 (444)
|+++.++..+|.++...|++++|+..|+++++.+|+++.+|+++|.++...|++++|+..|++++ .++|+++.++..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV--ARTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCcHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999 8999999999888
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH
Q 013375 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (444)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~ 317 (444)
|.++.... . .... .. ...|++++|+..|++++ +++|+++
T Consensus 80 g~~~~~~~--------------~-~~~~--------------~~-----------~~~g~~~~A~~~~~~al-~~~P~~~ 118 (217)
T 2pl2_A 80 SEAYVALY--------------R-QAED--------------RE-----------RGKGYLEQALSVLKDAE-RVNPRYA 118 (217)
T ss_dssp HHHHHHHH--------------H-TCSS--------------HH-----------HHHHHHHHHHHHHHHHH-HHCTTCH
T ss_pred HHHHHHhh--------------h-hhhh--------------hc-----------ccccCHHHHHHHHHHHH-HhCcccH
Confidence 77654310 0 0000 00 11367999999999999 9999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013375 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (444)
Q Consensus 318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~ 397 (444)
.+++++|.++..+|++++|+..|+++++++ ++ ..+|.++|.++..+|++++|+..|+++++.+| ++..+++++|.+
T Consensus 119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~ 194 (217)
T 2pl2_A 119 PLHLQRGLVYALLGERDKAEASLKQALALE-DT-PEIRSALAELYLSMGRLDEALAQYAKALEQAP--KDLDLRVRYASA 194 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHH
Confidence 999999999999999999999999999999 87 59999999999999999999999999999999 999999999999
Q ss_pred HHHhCCHHHHHHHHHHHH
Q 013375 398 QLVQGQLKGAVETYTHLL 415 (444)
Q Consensus 398 ~~~~g~~~~A~~~~~~al 415 (444)
+..+|++++|+..|+++-
T Consensus 195 ~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 195 LLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HTC---------------
T ss_pred HHHccCHHHHHHHHHHHh
Confidence 999999999999998864
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=1.5e-29 Score=247.98 Aligned_cols=246 Identities=14% Similarity=0.048 Sum_probs=215.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHH
Q 013375 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (444)
Q Consensus 160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~ 239 (444)
+...++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++ .++|+++.++..+|.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL--ELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCCHHHHHHHHH
Confidence 445699999999999999999999999999999999999999999999999999999999999 899999999998887
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchh-----hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC
Q 013375 240 ICGEYPDLAEEGATFASRALECLGDGCDQM-----ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (444)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~-----~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P 314 (444)
++. ..|++++|+..++++++..|...... ....+..+|.++... |++++|+..|++++ +++|
T Consensus 142 ~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al-~~~p 208 (365)
T 4eqf_A 142 SYT-NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS-----------SVLEGVKELYLEAA-HQNG 208 (365)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CC-----------HHHHHHHHHHHHHH-HHSC
T ss_pred HHH-ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh-----------hhHHHHHHHHHHHH-HhCc
Confidence 764 57899999999999999654322111 012223446666554 67999999999999 9999
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013375 315 R--DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (444)
Q Consensus 315 ~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~ 392 (444)
+ ++.+++++|.++...|++++|+..|+++++++|++ ..+|..+|.++..+|++++|+.+|+++++..| ++..+++
T Consensus 209 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~ 285 (365)
T 4eqf_A 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED-YSLWNRLGATLANGDRSEEAVEAYTRALEIQP--GFIRSRY 285 (365)
T ss_dssp SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHH
Confidence 9 99999999999999999999999999999999999 59999999999999999999999999999999 8999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 393 ~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
++|.++..+|++++|+..|++++++.|+..+
T Consensus 286 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 316 (365)
T 4eqf_A 286 NLGISCINLGAYREAVSNFLTALSLQRKSRN 316 (365)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccCC
Confidence 9999999999999999999999999998654
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=3.1e-29 Score=245.24 Aligned_cols=264 Identities=14% Similarity=0.099 Sum_probs=224.6
Q ss_pred CCcHHHHHH-HHHHHHHHHHHhhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Q 013375 135 RNNIEEAIL-LLMILLRKVALKRIEWDP----SILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG 209 (444)
Q Consensus 135 ~~~~~eAi~-~l~~~~~~~~l~~~p~~~----~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g 209 (444)
.+++++|+. .+ +.++...|.++ ..++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|
T Consensus 38 ~~~~~~a~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 38 LSDYDDLTSATY-----DKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp --------CHHH-----HCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhh-----hHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 456777776 43 33445566654 578999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh-----------HHHHHhh
Q 013375 210 EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES-----------TANCLLG 278 (444)
Q Consensus 210 ~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~-----------~a~~~lg 278 (444)
++++|+..|++++ .++|+++.++..+|.++. ..|++++|+..++++++..|.+...... ..+..+|
T Consensus 113 ~~~~A~~~~~~al--~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 1fch_A 113 QELLAISALRRCL--ELKPDNQTALMALAVSFT-NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 189 (368)
T ss_dssp CHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTH
T ss_pred CHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence 9999999999999 899999999998887765 4789999999999999966544321100 0011344
Q ss_pred hhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHH
Q 013375 279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWL 356 (444)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 356 (444)
.++ ..|++++|+..|++++ +++|+ ++.+++.+|.++...|++++|+..|+++++++|++ ..+|.
T Consensus 190 ~~~------------~~~~~~~A~~~~~~a~-~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 255 (368)
T 1fch_A 190 SLL------------SDSLFLEVKELFLAAV-RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-YLLWN 255 (368)
T ss_dssp HHH------------HHHHHHHHHHHHHHHH-HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHH
T ss_pred HHh------------hcccHHHHHHHHHHHH-HhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHH
Confidence 443 3478999999999999 99999 89999999999999999999999999999999999 59999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375 357 LMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 357 ~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
.+|.++...|++++|+..|+++++..| ++..+++.+|.++..+|++++|+..|++++++.|+..
T Consensus 256 ~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 319 (368)
T 1fch_A 256 KLGATLANGNQSEEAVAAYRRALELQP--GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 319 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999 8999999999999999999999999999999999773
No 24
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=1.4e-29 Score=250.99 Aligned_cols=225 Identities=10% Similarity=-0.020 Sum_probs=188.3
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH
Q 013375 154 LKRIEWDPSILDHLSFAFSIAGD-LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (444)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~ 232 (444)
+..+|++..+|+.+|.++...|+ +++|+..|++++.++|+++.+|+++|.++..+|++++|+..|+++| .++|++..
T Consensus 124 l~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal--~ldP~~~~ 201 (382)
T 2h6f_A 124 IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADIL--NQDAKNYH 201 (382)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH--HHCTTCHH
T ss_pred HHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCccCHH
Confidence 34457777788888888888886 8888888888888888888888888888888888888888888888 78888888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHH-----HHHHHH
Q 013375 233 ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKA-----LQALVS 307 (444)
Q Consensus 233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA-----~~~~~~ 307 (444)
++..+|.++. ..|++++|+.+|+++|++.|.+ ..+|+++|.++...+ +..++| ++.|++
T Consensus 202 a~~~lg~~~~-~~g~~~eAl~~~~~al~l~P~~-----~~a~~~lg~~l~~l~----------~~~~eA~~~~el~~~~~ 265 (382)
T 2h6f_A 202 AWQHRQWVIQ-EFKLWDNELQYVDQLLKEDVRN-----NSVWNQRYFVISNTT----------GYNDRAVLEREVQYTLE 265 (382)
T ss_dssp HHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT----------CSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhc----------CcchHHHHHHHHHHHHH
Confidence 8887776654 4678888888888888865443 568888888877632 222444 799999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc---------CHHHHHHHHH
Q 013375 308 AARSTNMRDLSILYRLSLEYAEQR--KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK---------RYEDAETILN 376 (444)
Q Consensus 308 al~~~~P~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g---------~~~eA~~~~~ 376 (444)
++ .++|++..+|+++|.++...| ++++|++.++++ +++|++ ..++..+|.++..+| .+++|+.+|+
T Consensus 266 Al-~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~-~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~ 342 (382)
T 2h6f_A 266 MI-KLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSS-PYLIAFLVDIYEDMLENQCDNKEDILNKALELCE 342 (382)
T ss_dssp HH-HHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCC-HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HH-HHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCC-HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 99 999999999999999999988 799999999998 999999 599999999999985 3699999999
Q ss_pred HH-HhhcCCCCcHHHHHHHHHHHHHh
Q 013375 377 AA-LDQTGKWEQGELLRTKAKVQLVQ 401 (444)
Q Consensus 377 ~a-l~~~P~~~~~~~~~~la~~~~~~ 401 (444)
++ ++.+| .....|..++..+..+
T Consensus 343 ~l~~~~DP--~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 343 ILAKEKDT--IRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHTTCG--GGHHHHHHHHHHHHHH
T ss_pred HHHHHhCc--hhHHHHHHHHHHHHHH
Confidence 99 99999 8999999998877654
No 25
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.8e-27 Score=217.99 Aligned_cols=231 Identities=13% Similarity=0.032 Sum_probs=211.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC-------hH
Q 013375 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC-------LP 232 (444)
Q Consensus 160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~-------~~ 232 (444)
.++++..+|.++...|++++|+..|+++++.+ +++.+|+.+|.++...|++++|+..|++++ ..+|++ +.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAV--EQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHH--HhCcccccchHHHHH
Confidence 46788999999999999999999999999999 999999999999999999999999999999 888877 67
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh
Q 013375 233 ALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST 312 (444)
Q Consensus 233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~ 312 (444)
++..+|.++. ..|++++|+.+++++++..+. .. ++. +.+++++|+..+++++ ..
T Consensus 81 ~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~------~~-------~~~-----------~~~~~~~a~~~~~~~~-~~ 134 (258)
T 3uq3_A 81 SFARIGNAYH-KLGDLKKTIEYYQKSLTEHRT------AD-------ILT-----------KLRNAEKELKKAEAEA-YV 134 (258)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCC------HH-------HHH-----------HHHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHHH-HcccHHHHHHHHHHHHhcCch------hH-------HHH-----------HHhHHHHHHHHHHHHH-Hc
Confidence 7887777654 579999999999999996432 11 222 2357899999999999 99
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013375 313 NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (444)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~ 392 (444)
+|+++.+++.+|.++...|++++|+..|+++++++|++ ..+|..+|.++...|++++|+.+++++++.+| ++..+++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~ 211 (258)
T 3uq3_A 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NFVRAYI 211 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH--HHHHHHH
Confidence 99999999999999999999999999999999999999 59999999999999999999999999999999 8999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375 393 TKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 393 ~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
.+|.++..+|++++|+..|++++++.|+..
T Consensus 212 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 241 (258)
T 3uq3_A 212 RKATAQIAVKEYASALETLDAARTKDAEVN 241 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhChhhc
Confidence 999999999999999999999999996543
No 26
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=2.3e-27 Score=222.19 Aligned_cols=242 Identities=15% Similarity=0.086 Sum_probs=211.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH----HHH
Q 013375 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP----ALL 235 (444)
Q Consensus 160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~----a~~ 235 (444)
+++++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++ . .|+++. ++.
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~-~~~~~~~~~~~~~ 78 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF--S-KVNATKAKSADFE 78 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH--T-TSCTTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH--h-ccCchhHHHHHHH
Confidence 456778999999999999999999999999999999999999999999999999999999999 6 554443 366
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC
Q 013375 236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR 315 (444)
Q Consensus 236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~ 315 (444)
.+|.++ ...|++++|+.+++++++..|.+ ..++..+|.++... |++++|+..|++++ +++|+
T Consensus 79 ~lg~~~-~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~-----------~~~~~A~~~~~~al-~~~~~ 140 (272)
T 3u4t_A 79 YYGKIL-MKKGQDSLAIQQYQAAVDRDTTR-----LDMYGQIGSYFYNK-----------GNFPLAIQYMEKQI-RPTTT 140 (272)
T ss_dssp HHHHHH-HHTTCHHHHHHHHHHHHHHSTTC-----THHHHHHHHHHHHT-----------TCHHHHHHHHGGGC-CSSCC
T ss_pred HHHHHH-HHcccHHHHHHHHHHHHhcCccc-----HHHHHHHHHHHHHc-----------cCHHHHHHHHHHHh-hcCCC
Confidence 677665 45789999999999999975544 46889999998765 67999999999999 99999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccC---HHHHHHHHHHHHhhc---CCCC---
Q 013375 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR---YEDAETILNAALDQT---GKWE--- 386 (444)
Q Consensus 316 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~---~~eA~~~~~~al~~~---P~~~--- 386 (444)
++.+++++|......+++++|+..|+++++++|++ ..++..+|.++...|+ +++|+..++++++.. | +
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~ 217 (272)
T 3u4t_A 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGG--AKYK 217 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGG--GGGH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccc--ccch
Confidence 99999999955555679999999999999999999 5999999999999999 999999999999886 5 3
Q ss_pred --cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhc
Q 013375 387 --QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (444)
Q Consensus 387 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 425 (444)
...++..+|.++...|++++|+..|++++++.|++....
T Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 218 DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAI 258 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHH
Confidence 237899999999999999999999999999999877643
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=7.5e-27 Score=223.76 Aligned_cols=239 Identities=15% Similarity=0.041 Sum_probs=215.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHH
Q 013375 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (444)
Q Consensus 160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~ 239 (444)
+...+..+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++ ..+|+++.++..++.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR--MLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCcCCHHHHHHHHH
Confidence 445778999999999999999999999999999999999999999999999999999999999 899999999988887
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHh--------------hh-hhhhhhhhhhchHHHHhhHHHHHHH
Q 013375 240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLL--------------GI-SLSAQSKVAITDFDRATRQAKALQA 304 (444)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~l--------------g~-~~~~~~~~~~~~~~~~~~~~eA~~~ 304 (444)
++. ..|++++|+..++++++..|... ..+..+ |. ++.. .|++++|+..
T Consensus 98 ~~~-~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~A~~~ 160 (327)
T 3cv0_A 98 SHT-NEHNANAALASLRAWLLSQPQYE-----QLGSVNLQADVDIDDLNVQSEDFFFAA-----------PNEYRECRTL 160 (327)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHTSTTTT-----TC--------------------CCTTS-----------HHHHHHHHHH
T ss_pred HHH-HcCCHHHHHHHHHHHHHhCCccH-----HHHHHHhHHHHHHHHHHHHHHhHHHHH-----------cccHHHHHHH
Confidence 764 57899999999999999655432 223333 33 3433 4679999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC
Q 013375 305 LVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK 384 (444)
Q Consensus 305 ~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~ 384 (444)
|++++ +.+|+++.+++.+|.++...|++++|+..++++++++|++ ..+|..+|.++...|++++|+.+++++++..|
T Consensus 161 ~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~- 237 (327)
T 3cv0_A 161 LHAAL-EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD-AQLWNKLGATLANGNRPQEALDAYNRALDINP- 237 (327)
T ss_dssp HHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHH-hhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-
Confidence 99999 9999999999999999999999999999999999999999 59999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375 385 WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 385 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~ 421 (444)
++..+++.+|.++..+|++++|+..|++++++.|+.
T Consensus 238 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 238 -GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred -CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 899999999999999999999999999999999984
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.95 E-value=5.8e-26 Score=217.02 Aligned_cols=277 Identities=10% Similarity=0.036 Sum_probs=224.2
Q ss_pred HHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHH
Q 013375 73 WKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKV 152 (444)
Q Consensus 73 ~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~ 152 (444)
.+..|++++|+..++++... +|++......-++. .|+..|++++|+..+ +
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~----~p~~~~e~~~~l~r--------------------~yi~~g~~~~al~~~-----~- 58 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS----SPERDVERDVFLYR--------------------AYLAQRKYGVVLDEI-----K- 58 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC----SHHHHHHHHHHHHH--------------------HHHHTTCHHHHHHHS-----C-
T ss_pred HHHHHHHHHHHHHHHhcccC----CchhhHHHHHHHHH--------------------HHHHCCCHHHHHHHh-----c-
Confidence 46799999999999998887 77653211122222 355678899998653 1
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC
Q 013375 153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG--IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC 230 (444)
Q Consensus 153 ~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~ 230 (444)
...|.+..++..++..+...|+.++|++.|++++.. +|+++.+++.+|.++...|++++|+..|++ |++
T Consensus 59 --~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~ 129 (291)
T 3mkr_A 59 --PSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDS 129 (291)
T ss_dssp --TTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCS
T ss_pred --ccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCC
Confidence 224556678889999999999999999999998865 699999999999999999999999998865 888
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHH
Q 013375 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAAR 310 (444)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~ 310 (444)
+.++..++.++. ..|++++|+..++++++..|.+. ...++.++.... ...|++++|+..|++++
T Consensus 130 ~~~~~~l~~~~~-~~g~~~~A~~~l~~~~~~~p~~~-------~~~l~~a~~~l~-------~~~~~~~eA~~~~~~~l- 193 (291)
T 3mkr_A 130 LECMAMTVQILL-KLDRLDLARKELKKMQDQDEDAT-------LTQLATAWVSLA-------AGGEKLQDAYYIFQEMA- 193 (291)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHH-------HCTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcCcH-------HHHHHHHHHHHH-------hCchHHHHHHHHHHHHH-
Confidence 999988888765 47999999999999999654321 222222222111 01367999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHH-HHHHHHHHHhhcCCCCcHH
Q 013375 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED-AETILNAALDQTGKWEQGE 389 (444)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~e-A~~~~~~al~~~P~~~~~~ 389 (444)
+.+|+++.+++++|.++..+|++++|+..|+++++++|++ ..+|.++|.++..+|++++ +..+++++++++| +++.
T Consensus 194 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P--~~~~ 270 (291)
T 3mkr_A 194 DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH-PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR--SHPF 270 (291)
T ss_dssp HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHH
T ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--CChH
Confidence 9999999999999999999999999999999999999999 4999999999999999987 5689999999999 8877
Q ss_pred HHHHHHHHHHHhCCHHHHHHHH
Q 013375 390 LLRTKAKVQLVQGQLKGAVETY 411 (444)
Q Consensus 390 ~~~~la~~~~~~g~~~~A~~~~ 411 (444)
+.- +..+.+.|+++...|
T Consensus 271 ~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 271 IKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHH----HHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHc
Confidence 543 456677788887766
No 29
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=2.3e-26 Score=215.32 Aligned_cols=243 Identities=12% Similarity=0.058 Sum_probs=209.7
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH----HHHHHHHHHHH
Q 013375 131 SFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK----ERYHILALCYY 206 (444)
Q Consensus 131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~l~ 206 (444)
.+...|++++|+..+ +.++..+|+++.++..+|.++...|++++|+..|++++. .|+++ .+|+.+|.++.
T Consensus 12 ~~~~~~~~~~A~~~~-----~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVF-----NKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHTTTCHHHHHHHH-----HHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHH-----HHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHH
Confidence 455678999999986 556788999999999999999999999999999999999 45444 45999999999
Q ss_pred HCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh-hhhhhhh
Q 013375 207 GAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG-ISLSAQS 285 (444)
Q Consensus 207 ~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg-~~~~~~~ 285 (444)
..|++++|+..|++++ ..+|+++.++..+|.++.. .|++++|+.+++++++..|.+ ..+++.+| .++..
T Consensus 86 ~~~~~~~A~~~~~~a~--~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~-----~~~~~~l~~~~~~~-- 155 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAV--DRDTTRLDMYGQIGSYFYN-KGNFPLAIQYMEKQIRPTTTD-----PKVFYELGQAYYYN-- 155 (272)
T ss_dssp HTTCHHHHHHHHHHHH--HHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHGGGCCSSCCC-----HHHHHHHHHHHHHT--
T ss_pred HcccHHHHHHHHHHHH--hcCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHhhcCCCc-----HHHHHHHHHHHHHH--
Confidence 9999999999999999 8999999999988887654 789999999999999964433 57889999 76654
Q ss_pred hhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhc---CCC----ChHHH
Q 013375 286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRK---LNAAHYYAKMLLKLE---GGS----NLKGW 355 (444)
Q Consensus 286 ~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~---P~~----~~~~~ 355 (444)
+++++|+..|++++ +++|+++.+++.+|.++...|+ +++|+..|++++++. |+. ...+|
T Consensus 156 ----------~~~~~A~~~~~~a~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 224 (272)
T 3u4t_A 156 ----------KEYVKADSSFVKVL-ELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN 224 (272)
T ss_dssp ----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 37899999999999 9999999999999999999999 999999999999987 542 02689
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013375 356 LLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (444)
Q Consensus 356 ~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g 402 (444)
..+|.++...|++++|+.+++++++++| ++..++-.++.+....+
T Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 225 EYIAYYYTINRDKVKADAAWKNILALDP--TNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHC-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCc--cHHHHHHHhhhhhcccc
Confidence 9999999999999999999999999999 89999988877665443
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.8e-26 Score=209.96 Aligned_cols=208 Identities=14% Similarity=0.074 Sum_probs=185.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCC-------HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh
Q 013375 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR-------KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL 231 (444)
Q Consensus 159 ~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~ 231 (444)
.++.++..+|.++...|++++|+..|++++.++|++ +.+|+.+|.++...|++++|+..|++++ .++|+ .
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~~~~~-~ 112 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL--TEHRT-A 112 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCCC-H
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH--hcCch-h
Confidence 445678889999999999999999999999998877 7999999999999999999999999999 78887 2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh
Q 013375 232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (444)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~ 311 (444)
..+ ...|++++|+..+++++... |. ...++..+|.++... |++++|+..|++++ .
T Consensus 113 ~~~--------~~~~~~~~a~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~a~-~ 167 (258)
T 3uq3_A 113 DIL--------TKLRNAEKELKKAEAEAYVN-PE----KAEEARLEGKEYFTK-----------SDWPNAVKAYTEMI-K 167 (258)
T ss_dssp HHH--------HHHHHHHHHHHHHHHHHHCC-HH----HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-H
T ss_pred HHH--------HHHhHHHHHHHHHHHHHHcC-cc----hHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-h
Confidence 222 23467899999999999943 22 357889999998764 67999999999999 9
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc------CCC
Q 013375 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT------GKW 385 (444)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~------P~~ 385 (444)
.+|+++.+++++|.++...|++++|+..|+++++++|++ ..+|..+|.++..+|++++|+.+++++++.. |
T Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p-- 244 (258)
T 3uq3_A 168 RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS-- 244 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT--
T ss_pred cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCC--
Confidence 999999999999999999999999999999999999999 5999999999999999999999999999999 8
Q ss_pred CcHHHHHHHHHH
Q 013375 386 EQGELLRTKAKV 397 (444)
Q Consensus 386 ~~~~~~~~la~~ 397 (444)
++..++..++.+
T Consensus 245 ~~~~~~~~l~~~ 256 (258)
T 3uq3_A 245 SAREIDQLYYKA 256 (258)
T ss_dssp THHHHHHHHHHT
T ss_pred chHHHHHHHHHh
Confidence 888888777654
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=4.9e-26 Score=207.73 Aligned_cols=168 Identities=20% Similarity=0.133 Sum_probs=127.1
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC-----------CCchHHHHHHHHhhc
Q 013375 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGA-----------GEDLVALNLLRTLLS 223 (444)
Q Consensus 155 ~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~-----------g~~~~A~~~~~~al~ 223 (444)
..+|+++.++..+|.++...|++++|+..|+++++++|+++.+|+++|.++... |++++|+..|++++
T Consensus 33 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al- 111 (217)
T 2pl2_A 33 KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE- 111 (217)
T ss_dssp TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH-
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHH-
Confidence 345788889999999999999999999999999999999999999999999998 77777777777777
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHH
Q 013375 224 GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ 303 (444)
Q Consensus 224 ~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~ 303 (444)
+++|+++.+++.+ |.++.. .|++++|+.
T Consensus 112 -~~~P~~~~~~~~l----------------------------------------g~~~~~-----------~g~~~~A~~ 139 (217)
T 2pl2_A 112 -RVNPRYAPLHLQR----------------------------------------GLVYAL-----------LGERDKAEA 139 (217)
T ss_dssp -HHCTTCHHHHHHH----------------------------------------HHHHHH-----------TTCHHHHHH
T ss_pred -HhCcccHHHHHHH----------------------------------------HHHHHH-----------cCChHHHHH
Confidence 6677666555544 444332 245778888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375 304 ALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (444)
Q Consensus 304 ~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~a 378 (444)
.|++++ +++ +++.+++++|.++..+|++++|+..|+++++++|++ ..++..+|.++..+|++++|+..|+++
T Consensus 140 ~~~~al-~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 140 SLKQAL-ALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD-LDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHH-HHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHTC--------------
T ss_pred HHHHHH-hcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 888888 888 888888888888888888888888888888888888 488888888888888888888888765
No 32
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.94 E-value=2.3e-23 Score=213.17 Aligned_cols=345 Identities=12% Similarity=0.025 Sum_probs=247.8
Q ss_pred HHHHHHHHhhhhc----ccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHH----hCChHH
Q 013375 10 LEAIFLKAKCLQG----LGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKL----ADAPRE 81 (444)
Q Consensus 10 ~~~~~~~g~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~----~g~~~e 81 (444)
.++++..|.+|.. .+++++|+..|+++++.. ...+...+|.+|.. .+++++
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------------------~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------------------YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 5778888888888 888888888888887531 12466677777777 777777
Q ss_pred HHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcC-CCC-------------C--CccccccCccccC----CCcHHHH
Q 013375 82 TIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGG-ETC-------------P--PNLRSQMGSSFVP----RNNIEEA 141 (444)
Q Consensus 82 A~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~-~~~-------------~--~~~~~~~~~~~~~----~~~~~eA 141 (444)
|+.+|+++.+.. ++. ....++.++..+.. ... . +.....++.+|.. .+++++|
T Consensus 98 A~~~~~~a~~~~---~~~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQ----AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHHTT---CHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHCC---CHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 777777777651 221 13445555444321 000 0 0000112222322 4567777
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----CCCchH
Q 013375 142 ILLLMILLRKVALKRIEWDPSILDHLSFAFSI----AGDLSSLATQIEELLPGIINRKERYHILALCYYG----AGEDLV 213 (444)
Q Consensus 142 i~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~----~g~~~~ 213 (444)
+..+.. ++. ..++.++..+|.+|.. .+++++|+..|+++++. +++.+++.+|.+|.. .+++++
T Consensus 171 ~~~~~~-----a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 171 REWYSK-----AAE--QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp HHHHHH-----HHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHH-----HHH--CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 776522 222 3567778888888777 77888888888887764 567778888888876 777888
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhc
Q 013375 214 ALNLLRTLLSGSEDPKCLPALLIASKICGE---YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAIT 290 (444)
Q Consensus 214 A~~~~~~al~~~~~P~~~~a~~~~~~~~~~---~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~ 290 (444)
|+..|++++ .. +++.+++.++.++.. ..++.++|+.+|+++++. .+ ..+++.+|.+|......
T Consensus 242 A~~~~~~a~--~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~-----~~a~~~Lg~~y~~~~~g--- 307 (490)
T 2xm6_A 242 SRVLFSQSA--EQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GN-----SDGQYYLAHLYDKGAEG--- 307 (490)
T ss_dssp HHHHHHHHH--TT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TC-----HHHHHHHHHHHHHCBTT---
T ss_pred HHHHHHHHH--HC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHcCCCC---
Confidence 888888877 33 556666666666543 146777888888887763 11 35677777777542000
Q ss_pred hHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH---
Q 013375 291 DFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR---KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA--- 364 (444)
Q Consensus 291 ~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~--- 364 (444)
..+++++|+..|++++ +. +++.+++++|.++...| ++++|+.+|+++++. ++ ..+++.+|.++..
T Consensus 308 ---~~~~~~~A~~~~~~a~-~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~-~~a~~~Lg~~y~~g~g 378 (490)
T 2xm6_A 308 ---VAKNREQAISWYTKSA-EQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GE-KAAQFNLGNALLQGKG 378 (490)
T ss_dssp ---BCCCHHHHHHHHHHHH-HT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTSS
T ss_pred ---CcCCHHHHHHHHHHHH-hc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHcCCC
Confidence 0157899999999999 75 67889999999999877 899999999999987 55 4999999999999
Q ss_pred -ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHH
Q 013375 365 -QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAAL 418 (444)
Q Consensus 365 -~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~ 418 (444)
.+++++|+.+|++|++. .++.+++++|.++.. .+++++|+..|+++++..
T Consensus 379 ~~~~~~~A~~~~~~A~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 379 VKKDEQQAAIWMRKAAEQ----GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 89999999999999875 467899999999998 899999999999999998
No 33
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=1.3e-23 Score=217.06 Aligned_cols=378 Identities=13% Similarity=0.016 Sum_probs=279.1
Q ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 013375 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (444)
Q Consensus 10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (444)
.++|...+. +.+.|++++|...|+++++.+ |.+ ...+...+.++.+.|++++|+..|+++
T Consensus 13 ~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--------P~~-----------~~~w~~~~~~~~~~~~~~~a~~~~~ra 72 (530)
T 2ooe_A 13 LDAWSILIR-EAQNQPIDKARKTYERLVAQF--------PSS-----------GRFWKLYIEAEIKAKNYDKVEKLFQRC 72 (530)
T ss_dssp HHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--------TTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--------CCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 467888887 477899999999999999763 432 256777888899999999999999999
Q ss_pred hCcCCCCChHHHHHHHHHHHHHHhhh-cCCC-------------------CCCccc--cccCccccC---------CCcH
Q 013375 90 LLPCWNLDAETTAKLQKEFAIFLLYC-GGET-------------------CPPNLR--SQMGSSFVP---------RNNI 138 (444)
Q Consensus 90 L~~~~~~~~~~~~~l~~~~a~~ll~~-~~~~-------------------~~~~~~--~~~~~~~~~---------~~~~ 138 (444)
++. .|.. . +...++.+.... +... .+.... .....+... +|++
T Consensus 73 l~~----~p~~-~-lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 146 (530)
T 2ooe_A 73 LMK----VLHI-D-LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 146 (530)
T ss_dssp TTT----CCCH-H-HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH
T ss_pred Hhc----CCCh-H-HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH
Confidence 999 3321 1 222222221111 1000 000000 000111111 4566
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCH--HHHHHHHH-----------------------------------------------
Q 013375 139 EEAILLLMILLRKVALKRIEWDP--SILDHLSF----------------------------------------------- 169 (444)
Q Consensus 139 ~eAi~~l~~~~~~~~l~~~p~~~--~~~~~lg~----------------------------------------------- 169 (444)
++|...+ +.++. .|... ..|.....
T Consensus 147 ~~a~~~y-----~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 147 TAVRRVY-----QRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp HHHHHHH-----HHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHHHHH-----HHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 6776664 44555 46542 22221100
Q ss_pred ----------------HHHh------cCCH----HHHHHHHHhhcCCCCCCHHHHHHHHHHHHH-------CCCch----
Q 013375 170 ----------------AFSI------AGDL----SSLATQIEELLPGIINRKERYHILALCYYG-------AGEDL---- 212 (444)
Q Consensus 170 ----------------~l~~------~g~~----~~A~~~~~~al~~~p~~~~~~~~la~~l~~-------~g~~~---- 212 (444)
+... .++. ..++..|++++..+|.++++|+.+|..+.. .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 0000 0122 367789999999999999999999999987 89987
Q ss_pred ---HHHHHHHHhhcCC-CCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhh
Q 013375 213 ---VALNLLRTLLSGS-EDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA 288 (444)
Q Consensus 213 ---~A~~~~~~al~~~-~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~ 288 (444)
+|+.+|++++ . ..|+++.++...+.+. ...|++++|...|+++++. +|... ..+|..+|.++..
T Consensus 301 ~~~~A~~~~~~Al--~~~~p~~~~l~~~~~~~~-~~~g~~~~A~~~~~~al~~-~p~~~---~~~~~~~~~~~~~----- 368 (530)
T 2ooe_A 301 FSDEAANIYERAI--STLLKKNMLLYFAYADYE-ESRMKYEKVHSIYNRLLAI-EDIDP---TLVYIQYMKFARR----- 368 (530)
T ss_dssp HHHHHHHHHHHHT--TTTCSSCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHS-SSSCH---HHHHHHHHHHHHH-----
T ss_pred hhHHHHHHHHHHH--HHhCcccHHHHHHHHHHH-HhcCCHHHHHHHHHHHhCc-cccCc---hHHHHHHHHHHHH-----
Confidence 9999999999 7 7999999998887765 4468999999999999994 44321 2578888877654
Q ss_pred hchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccC
Q 013375 289 ITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLE-YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR 367 (444)
Q Consensus 289 ~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~-~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~ 367 (444)
.|++++|++.|++++ +..|.++..+...+.+ +...|++++|...|+++++.+|++ ..+|..++.++...|+
T Consensus 369 ------~~~~~~A~~~~~~Al-~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~-~~~~~~~~~~~~~~g~ 440 (530)
T 2ooe_A 369 ------AEGIKSGRMIFKKAR-EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYLSHLNE 440 (530)
T ss_dssp ------HHHHHHHHHHHHHHH-TCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTTTC
T ss_pred ------hcCHHHHHHHHHHHH-hccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC-HHHHHHHHHHHHhCCC
Confidence 467899999999999 9999998888877766 346999999999999999999999 5999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccCccch--hhhccCCCCC
Q 013375 368 YEDAETILNAALDQTGKWEQ----GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDKRF--YKVCLSPSCP 441 (444)
Q Consensus 368 ~~eA~~~~~~al~~~P~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~--~~~~~~~~~~ 441 (444)
+++|..+|++++...| .+ ..+|..........|+.+.+...++++++..|+..+......|+ +++.+.-+|.
T Consensus 441 ~~~Ar~~~~~al~~~~--~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~ 518 (530)
T 2ooe_A 441 DNNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMDLYPCS 518 (530)
T ss_dssp HHHHHHHHHHHHHSCC--SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHTTCHHHHHGGGTCBTTBCSSC
T ss_pred HhhHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhccCchHHHHHHHHHhcccCCCC
Confidence 9999999999999876 44 34888888899999999999999999999999766544444444 7777776673
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=2.5e-25 Score=212.64 Aligned_cols=257 Identities=16% Similarity=0.037 Sum_probs=217.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchH
Q 013375 135 RNNIEEAILLLMILLRKVALKRIEWD-PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (444)
Q Consensus 135 ~~~~~eAi~~l~~~~~~~~l~~~p~~-~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~ 213 (444)
.|++++|+..+ +.+....|++ .++...++.+|...|+++.|+..++.. +|.+..++..++..+...|++++
T Consensus 12 ~g~y~~ai~~~-----~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 12 IGSYQQCINEA-----QRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp TTCHHHHHHHH-----HHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHH-----HhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHH
Confidence 67899999864 3334455655 357788999999999999999988763 67788899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHH
Q 013375 214 ALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFD 293 (444)
Q Consensus 214 A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~ 293 (444)
|+..+++.+....+|+++.+++.+|.++. ..|++++|+..+++ |++ ..++..+|.++..+
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~-~~g~~~~Al~~l~~-----~~~-----~~~~~~l~~~~~~~--------- 143 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYF-YDQNPDAALRTLHQ-----GDS-----LECMAMTVQILLKL--------- 143 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHH-HTTCHHHHHHHHTT-----CCS-----HHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHH-HCCCHHHHHHHHhC-----CCC-----HHHHHHHHHHHHHC---------
Confidence 99999999831247999999988887765 57999999999987 332 56889999998765
Q ss_pred HHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHH
Q 013375 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLE--YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (444)
Q Consensus 294 ~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~--~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA 371 (444)
|++++|++.|++++ +.+|++.......|++ +...|++++|+..|+++++.+|++ ..+|+++|.++..+|++++|
T Consensus 144 --g~~~~A~~~l~~~~-~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~eA 219 (291)
T 3mkr_A 144 --DRLDLARKELKKMQ-DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT-LLLLNGQAACHMAQGRWEAA 219 (291)
T ss_dssp --TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHTTCHHHH
T ss_pred --CCHHHHHHHHHHHH-hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHH
Confidence 67999999999999 9999987555544433 334589999999999999999999 59999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHhhhhhc
Q 013375 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKG-AVETYTHLLAALQVQTKTF 425 (444)
Q Consensus 372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~l~~~~~~~~ 425 (444)
+..++++++.+| +++.+++++|.++..+|+.++ +...+++++++.|++....
T Consensus 220 ~~~l~~al~~~p--~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 220 EGVLQEALDKDS--GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 999999999999 999999999999999999987 5688899999999987643
No 35
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.94 E-value=3.1e-23 Score=212.23 Aligned_cols=310 Identities=13% Similarity=0.040 Sum_probs=232.2
Q ss_pred HHHHHHHHHHHH----hCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcC-CCC---------------CCc
Q 013375 64 RAVELLPELWKL----ADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGG-ETC---------------PPN 123 (444)
Q Consensus 64 ~a~~~l~~~~~~----~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~-~~~---------------~~~ 123 (444)
.+...+|.+|.. .+++++|+.+|+++++.. ++. ....++.++..+.. ... .+.
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 112 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTP----AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQ 112 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 578888999999 999999999999999871 332 24566766665421 110 000
Q ss_pred cccccCccccC----CCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhcCCCCCCH
Q 013375 124 LRSQMGSSFVP----RNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSI----AGDLSSLATQIEELLPGIINRK 195 (444)
Q Consensus 124 ~~~~~~~~~~~----~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~----~g~~~~A~~~~~~al~~~p~~~ 195 (444)
..+.++.+|.. .+++++|+..+.. +.. +.++.++..+|.+|.. .+++++|+..|+++++. +++
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~-----a~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~ 183 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRL-----AAE--QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNV 183 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHH-----HHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHH-----HHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 01223334444 5677788776532 222 4577788888888877 77888888888888765 578
Q ss_pred HHHHHHHHHHHH----CCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCCcch
Q 013375 196 ERYHILALCYYG----AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE---YPDLAEEGATFASRALECLGDGCDQ 268 (444)
Q Consensus 196 ~~~~~la~~l~~----~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~---~~~~~~eA~~~~~~al~~~~~~~~~ 268 (444)
.+++.||.+|.. .+++++|+..|++++ . ++++.+++.++.++.. ..+++++|+.+|+++++. . +
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~--~--~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~-~--- 254 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSA--T--SGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-G-N--- 254 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-T-C---
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH--H--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C-C---
Confidence 888888888887 788888888888888 3 3566677777766553 256778888888888773 1 1
Q ss_pred hhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHH
Q 013375 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ-----RKLNAAHYYAKML 343 (444)
Q Consensus 269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~-----g~~~~A~~~~~~a 343 (444)
..+++.+|.+|..... ..+++++|+..|++++ +. +++.++++||.++... +++++|+..|+++
T Consensus 255 --~~a~~~lg~~y~~g~~-------~~~d~~~A~~~~~~a~-~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 255 --SIAQFRLGYILEQGLA-------GAKEPLKALEWYRKSA-EQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp --HHHHHHHHHHHHHTTT-------SSCCHHHHHHHHHHHH-TT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHCCCC-------CCCCHHHHHHHHHHHH-Hc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 4577777877754100 0257899999999999 65 7889999999999998 9999999999999
Q ss_pred HhhcCCCChHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Q 013375 344 LKLEGGSNLKGWLLMARILSAQK---RYEDAETILNAALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLA 416 (444)
Q Consensus 344 l~l~P~~~~~~~~~la~~l~~~g---~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 416 (444)
++. ++ ..++..+|.++...| ++++|+.+|+++++. +++.+++++|.++.. .+++++|+..|+++++
T Consensus 323 ~~~--~~-~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 323 AEQ--GD-ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHT--TC-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred Hhc--CC-HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 876 45 489999999999866 899999999999976 467899999999999 8999999999999987
Q ss_pred H
Q 013375 417 A 417 (444)
Q Consensus 417 l 417 (444)
.
T Consensus 396 ~ 396 (490)
T 2xm6_A 396 Q 396 (490)
T ss_dssp T
T ss_pred C
Confidence 4
No 36
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=2.7e-26 Score=226.66 Aligned_cols=315 Identities=12% Similarity=0.011 Sum_probs=244.8
Q ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 013375 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (444)
Q Consensus 10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (444)
+.+++.+|.++...|++++|+..|+++++.. |.. .+....++..+|.++...|++++|+..|+++
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--------~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 73 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--------TED-------LKTLSAIYSQLGNAYFYLHDYAKALEYHHHD 73 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CSC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------ccc-------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4578899999999999999999999999862 221 1123467888999999999999999999998
Q ss_pred hCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013375 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (444)
Q Consensus 90 L~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (444)
+.. ... ....|....++..+|.
T Consensus 74 l~~----~~~------------------------------------------------------~~~~~~~~~~~~~la~ 95 (406)
T 3sf4_A 74 LTL----ART------------------------------------------------------IGDQLGEAKASGNLGN 95 (406)
T ss_dssp HHH----HHH------------------------------------------------------TTCHHHHHHHHHHHHH
T ss_pred HHH----HHh------------------------------------------------------ccccHHHHHHHHHHHH
Confidence 876 100 0001223456778899
Q ss_pred HHHhcCCHHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHHCCC--------------------chHHHHHHHHhhc
Q 013375 170 AFSIAGDLSSLATQIEELLPGIINR------KERYHILALCYYGAGE--------------------DLVALNLLRTLLS 223 (444)
Q Consensus 170 ~l~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~l~~~g~--------------------~~~A~~~~~~al~ 223 (444)
++...|++++|+..|++++.+.|.. ..+++.+|.++...|+ +++|+..|++++
T Consensus 96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al- 174 (406)
T 3sf4_A 96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL- 174 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH-
Confidence 9999999999999999998876654 4588899999999999 999999999888
Q ss_pred CCC------CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc-chhhhHHHHHhhhhhhhhhhhhhchHHHHh
Q 013375 224 GSE------DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGC-DQMESTANCLLGISLSAQSKVAITDFDRAT 296 (444)
Q Consensus 224 ~~~------~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~-~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 296 (444)
.+ .|....++..+|.++. ..|++++|+.+++++++..+... ......++..+|.++... |
T Consensus 175 -~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-----------g 241 (406)
T 3sf4_A 175 -SLVTALGDRAAQGRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL-----------G 241 (406)
T ss_dssp -HHHHHTTCHHHHHHHHHHHHHHHH-HHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------T
T ss_pred -HHHHhccCcHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-----------C
Confidence 44 3333445666666654 46889999999999998654322 223345788899988764 6
Q ss_pred hHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHc
Q 013375 297 RQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQ 365 (444)
Q Consensus 297 ~~~eA~~~~~~al~~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~ 365 (444)
++++|+..|++++ .+.|.. +.+++++|.++...|++++|+..|++++++.+... ..++..+|.++..+
T Consensus 242 ~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 320 (406)
T 3sf4_A 242 EFETASEYYKKTL-LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320 (406)
T ss_dssp CHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH-HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 7999999999999 998877 78999999999999999999999999999876542 36889999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 013375 366 KRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETYT 412 (444)
Q Consensus 366 g~~~eA~~~~~~al~~~P~~----~~~~~~~~la~~~~~~g~~~~A~~~~~ 412 (444)
|++++|+.+++++++..+.. ....++..+|.++..+|+...+...+.
T Consensus 321 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 371 (406)
T 3sf4_A 321 GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIM 371 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 99999999999999885411 347789999999999998855444433
No 37
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=4.6e-25 Score=194.81 Aligned_cols=174 Identities=16% Similarity=0.163 Sum_probs=142.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013375 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (444)
Q Consensus 158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~ 237 (444)
++++.+|+++|.++...|++++|++.|+++++++|+++++|+.+|.++...|++++|+..+++++ ..+|+++.++...
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~ 79 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFV--VLDTTSAEAYYIL 79 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCCCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCchhHHHHHHH
Confidence 35677888888888888888888888888888888888888888888888888888888888888 7778777665544
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH
Q 013375 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (444)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~ 317 (444)
+.++ .. .+++++|+..+.+++ .++|+++
T Consensus 80 ~~~~----------------------------------------~~-----------~~~~~~a~~~~~~a~-~~~~~~~ 107 (184)
T 3vtx_A 80 GSAN----------------------------------------FM-----------IDEKQAAIDALQRAI-ALNTVYA 107 (184)
T ss_dssp HHHH----------------------------------------HH-----------TTCHHHHHHHHHHHH-HHCTTCH
T ss_pred HHHH----------------------------------------HH-----------cCCHHHHHHHHHHHH-HhCccch
Confidence 3332 11 235678888888888 8899999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013375 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG 388 (444)
Q Consensus 318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~ 388 (444)
.++..+|.++..+|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+.+|++|++.+| +++
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~a 175 (184)
T 3vtx_A 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF-IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE--KKA 175 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH--HHH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh-hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc--cCH
Confidence 999999999999999999999999999999988 48999999999999999999999999998888 553
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=3.7e-25 Score=203.09 Aligned_cols=220 Identities=16% Similarity=0.088 Sum_probs=175.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHH
Q 013375 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASK 239 (444)
Q Consensus 160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~ 239 (444)
.+..+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++ ..+|+++.++..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKAL--ELDSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HcCCcchHHHHHHHH
Confidence 556788999999999999999999999999999999999999999999999999999999999 899999999888887
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHH
Q 013375 240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSI 319 (444)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a 319 (444)
++.. .|++++|+.+++++++..|.+ ..++..+|.++... |++++|+..|++++ +.+|+++.+
T Consensus 100 ~~~~-~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~a~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~ 161 (243)
T 2q7f_A 100 VYVV-KEMYKEAKDMFEKALRAGMEN-----GDLFYMLGTVLVKL-----------EQPKLALPYLQRAV-ELNENDTEA 161 (243)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHTCCS-----HHHHHHHHHHHHHT-----------SCHHHHHHHHHHHH-HHCTTCHHH
T ss_pred HHHH-hccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHh-----------ccHHHHHHHHHHHH-HhCCccHHH
Confidence 7654 689999999999999965543 45788888888654 57899999999999 999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013375 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL 399 (444)
Q Consensus 320 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~ 399 (444)
++.+|.++...|++++|+..+++++..+|++ ..+|..+|.++..+|++++|+.+++++++.+| ++..++..++.+..
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 162 RFQFGMCLANEGMLDEALSQFAAVTEQDPGH-ADAFYNAGVTYAYKENREKALEMLDKAIDIQP--DHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT--TCHHHHHHHTC---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHccCHHHHHHHHHHHHccCc--chHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 59999999999999999999999999999999 88888888877765
Q ss_pred HhC
Q 013375 400 VQG 402 (444)
Q Consensus 400 ~~g 402 (444)
..|
T Consensus 239 ~~~ 241 (243)
T 2q7f_A 239 HHH 241 (243)
T ss_dssp ---
T ss_pred hcc
Confidence 544
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.93 E-value=4e-25 Score=206.76 Aligned_cols=250 Identities=10% Similarity=-0.034 Sum_probs=209.5
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 013375 130 SSFVPRNNIEEAILLLMILLRKVALKR----IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCY 205 (444)
Q Consensus 130 ~~~~~~~~~~eAi~~l~~~~~~~~l~~----~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 205 (444)
......+++++|+..+ +.++.. .|.++.++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++
T Consensus 13 ~~~~~~~~~~~A~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 87 (275)
T 1xnf_A 13 VPLQPTLQQEVILARM-----EQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYL 87 (275)
T ss_dssp CCCCCCHHHHHHHHHH-----HHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred eccCccchHHHHHHHH-----HHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 3556678999999986 444554 3567789999999999999999999999999999999999999999999
Q ss_pred HHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhh
Q 013375 206 YGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS 285 (444)
Q Consensus 206 ~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~ 285 (444)
...|++++|+..|++++ ..+|+++.++..+|.++.. .|++++|+.+++++++..|.+. .....++.++
T Consensus 88 ~~~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~---- 155 (275)
T 1xnf_A 88 TQAGNFDAAYEAFDSVL--ELDPTYNYAHLNRGIALYY-GGRDKLAQDDLLAFYQDDPNDP-----FRSLWLYLAE---- 155 (275)
T ss_dssp HHTTCHHHHHHHHHHHH--HHCTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHH----
T ss_pred HHccCHHHHHHHHHHHH--hcCccccHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHH----
Confidence 99999999999999999 8999999999988887654 7999999999999999765442 2233333332
Q ss_pred hhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---hHHHHHHHHHH
Q 013375 286 KVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLMARIL 362 (444)
Q Consensus 286 ~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~~la~~l 362 (444)
..|++++|+..|++++ ...|++...+. ++.++...++.++|+..+++++..+|+.. ..+|..+|.++
T Consensus 156 --------~~~~~~~A~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 225 (275)
T 1xnf_A 156 --------QKLDEKQAKEVLKQHF-EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY 225 (275)
T ss_dssp --------HHHCHHHHHHHHHHHH-HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred --------HhcCHHHHHHHHHHHH-hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence 2468999999999999 99999977765 77778888999999999999999888530 38899999999
Q ss_pred HHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 013375 363 SAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETY 411 (444)
Q Consensus 363 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~ 411 (444)
..+|++++|+.+|++++..+| ++.. ..+.++..+|++++|++.|
T Consensus 226 ~~~g~~~~A~~~~~~al~~~p--~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 226 LSLGDLDSATALFKLAVANNV--HNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTCHHHHHHHHHHHHTTCC--TTCH---HHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHhCCc--hhHH---HHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999 6644 3477888999999999988
No 40
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.93 E-value=5.8e-25 Score=224.45 Aligned_cols=222 Identities=13% Similarity=0.071 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHH
Q 013375 138 IEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDL-SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALN 216 (444)
Q Consensus 138 ~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~ 216 (444)
+++++..+ +......|.++.++..+|.++...|++ ++|+..|+++++++|+++++|+.+|.+|...|++++|+.
T Consensus 84 ~~~al~~l-----~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQM-----EEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHH-----HHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHH-----HHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 44555443 345577788999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHH
Q 013375 217 LLRTLLSGSEDPKCLPALLIASKICGEYP-DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRA 295 (444)
Q Consensus 217 ~~~~al~~~~~P~~~~a~~~~~~~~~~~~-~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~ 295 (444)
.|++++ .++|+ ..++..+|.++.... +.. ..+.
T Consensus 159 ~~~~al--~~~p~-~~~~~~lg~~~~~~~~~~~-------------------------------------------~~~~ 192 (474)
T 4abn_A 159 CFSGAL--THCKN-KVSLQNLSMVLRQLQTDSG-------------------------------------------DEHS 192 (474)
T ss_dssp HHHHHH--TTCCC-HHHHHHHHHHHTTCCCSCH-------------------------------------------HHHH
T ss_pred HHHHHH--hhCCC-HHHHHHHHHHHHHhccCCh-------------------------------------------hhhh
Confidence 999999 88998 577776666553311 100 0124
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhcC---CCChHHHHHHHHHHHH
Q 013375 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ--------RKLNAAHYYAKMLLKLEG---GSNLKGWLLMARILSA 364 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~--------g~~~~A~~~~~~al~l~P---~~~~~~~~~la~~l~~ 364 (444)
|++++|+..|++++ +++|+++.+|+++|.++... |++++|+..|+++++++| ++ ..+|.++|.++..
T Consensus 193 g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~lg~~~~~ 270 (474)
T 4abn_A 193 RHVMDSVRQAKLAV-QMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN-PDLHLNRATLHKY 270 (474)
T ss_dssp HHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC-HHHHHHHHHHHHH
Confidence 67899999999999 99999999999999999999 999999999999999999 88 5999999999999
Q ss_pred ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013375 365 QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (444)
Q Consensus 365 ~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 414 (444)
+|++++|+.+|+++++++| ++..++..++.++..+|++++|+..+.++
T Consensus 271 ~g~~~~A~~~~~~al~l~p--~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 271 EESYGEALEGFSQAAALDP--AWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp TTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999 89999999999999999999999988665
No 41
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.93 E-value=6.9e-26 Score=225.15 Aligned_cols=291 Identities=13% Similarity=-0.011 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHH
Q 013375 63 NRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAI 142 (444)
Q Consensus 63 ~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi 142 (444)
...+..+|..+...|++++|+..|+++++. +|.+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~--------------------------------------- 84 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQA----GTEDLRT--------------------------------------- 84 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHH---------------------------------------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh----cccChhH---------------------------------------
Confidence 345566778888888888888888888877 3321100
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC------CCCCHHHHHHHHHHHHHCCCchHHHH
Q 013375 143 LLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGEDLVALN 216 (444)
Q Consensus 143 ~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~l~~~g~~~~A~~ 216 (444)
...++..+|.++...|++++|+..|++++.+ .|....+++.+|.++...|++++|+.
T Consensus 85 -----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 147 (411)
T 4a1s_A 85 -----------------LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAI 147 (411)
T ss_dssp -----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 0124556677777777777777777777666 46666777777777777777777777
Q ss_pred HHHHhhcCCC------CCCChHHHHHHHHHHhcCCCC-----------------HHHHHHHHHHHHHHcCC-CcchhhhH
Q 013375 217 LLRTLLSGSE------DPKCLPALLIASKICGEYPDL-----------------AEEGATFASRALECLGD-GCDQMEST 272 (444)
Q Consensus 217 ~~~~al~~~~------~P~~~~a~~~~~~~~~~~~~~-----------------~~eA~~~~~~al~~~~~-~~~~~~~~ 272 (444)
.|++++ .+ .|....++..+|.++.. .|+ +++|+.+++++++..+. ........
T Consensus 148 ~~~~al--~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (411)
T 4a1s_A 148 CCERHL--TLARQLGDRLSEGRALYNLGNVYHA-KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR 224 (411)
T ss_dssp HHHHHH--HHHHHHTCHHHHHHHHHHHHHHHHH-HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHH--HHHHHhhchHHHHHHHHHHHHHHHH-cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777 45 34444555555555433 456 77777777777765321 11123456
Q ss_pred HHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013375 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS------ILYRLSLEYAEQRKLNAAHYYAKMLLKL 346 (444)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~------a~~~lg~~~~~~g~~~~A~~~~~~al~l 346 (444)
++..+|.++... |++++|+..|++++ ++.|.+.. +++++|.++...|++++|+..|++++++
T Consensus 225 ~~~~la~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 225 ACGNLGNTYYLL-----------GDFQAAIEHHQERL-RIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-----------CChHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 888899988765 67999999999999 98886554 8999999999999999999999999999
Q ss_pred cCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013375 347 EGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (444)
Q Consensus 347 ~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 417 (444)
.|+.. ..++..+|.++..+|++++|+.+++++++..++. ....+++.+|.++..+|++++|+..|++++++
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 88531 3788999999999999999999999999886511 12568999999999999999999999999999
Q ss_pred HHhhhhhccCc
Q 013375 418 LQVQTKTFSSD 428 (444)
Q Consensus 418 ~~~~~~~~~~~ 428 (444)
.+...+..+..
T Consensus 373 ~~~~~~~~~~~ 383 (411)
T 4a1s_A 373 AXXXXXXXXXX 383 (411)
T ss_dssp CCHHHHHHHHH
T ss_pred Hhhcccchhhh
Confidence 87766544433
No 42
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=3.9e-25 Score=218.32 Aligned_cols=283 Identities=13% Similarity=-0.004 Sum_probs=232.4
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHH
Q 013375 64 RAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAIL 143 (444)
Q Consensus 64 ~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~ 143 (444)
.++...|..+...|++++|+..|+++++. +|.+..
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~----------------------------------------- 44 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLK----------------------------------------- 44 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHH-----------------------------------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc----CcccHH-----------------------------------------
Confidence 35677888899999999999999998887 332110
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC------CCCCHHHHHHHHHHHHHCCCchHHHHH
Q 013375 144 LLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGEDLVALNL 217 (444)
Q Consensus 144 ~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~l~~~g~~~~A~~~ 217 (444)
....++..+|.++...|++++|+..|++++.+ .|....+++.+|.++...|++++|+..
T Consensus 45 ---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 109 (406)
T 3sf4_A 45 ---------------TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVC 109 (406)
T ss_dssp ---------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 00235678999999999999999999999876 456688999999999999999999999
Q ss_pred HHHhhcCCCCCCC------hHHHHHHHHHHhcCCCC--------------------HHHHHHHHHHHHHHcCCC-cchhh
Q 013375 218 LRTLLSGSEDPKC------LPALLIASKICGEYPDL--------------------AEEGATFASRALECLGDG-CDQME 270 (444)
Q Consensus 218 ~~~al~~~~~P~~------~~a~~~~~~~~~~~~~~--------------------~~eA~~~~~~al~~~~~~-~~~~~ 270 (444)
|++++ .+.|+. ..++..+|.++. ..|+ +++|+.+++++++..... +....
T Consensus 110 ~~~al--~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~ 186 (406)
T 3sf4_A 110 CQRHL--DISRELNDKVGEARALYNLGNVYH-AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQ 186 (406)
T ss_dssp HHHHH--HHHHHHTCHHHHHHHHHHHHHHHH-HHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHH--HHHHhcccccchHHHHHHHHHHHH-HcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHH
Confidence 99999 676653 336666666654 4678 999999999999864321 12344
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS------ILYRLSLEYAEQRKLNAAHYYAKMLL 344 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~------a~~~lg~~~~~~g~~~~A~~~~~~al 344 (444)
..++..+|.++... |++++|+..|++++ ++.|.... +++++|.++...|++++|+..+++++
T Consensus 187 ~~~~~~la~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 254 (406)
T 3sf4_A 187 GRAFGNLGNTHYLL-----------GNFRDAVIAHEQRL-LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254 (406)
T ss_dssp HHHHHHHHHHHHHH-----------TBHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 56788899988764 67999999999999 88776655 89999999999999999999999999
Q ss_pred hhcCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013375 345 KLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKWE----QGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (444)
Q Consensus 345 ~l~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al 415 (444)
.+.|+.. ..++..+|.++..+|++++|+.+++++++..++.. ...++..+|.++..+|++++|+..|++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 255 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9988651 26888999999999999999999999998865211 26789999999999999999999999999
Q ss_pred HHHHhh
Q 013375 416 AALQVQ 421 (444)
Q Consensus 416 ~l~~~~ 421 (444)
++.+..
T Consensus 335 ~~~~~~ 340 (406)
T 3sf4_A 335 EISREV 340 (406)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 997755
No 43
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.93 E-value=5.5e-25 Score=210.40 Aligned_cols=282 Identities=13% Similarity=0.006 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHH
Q 013375 65 AVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILL 144 (444)
Q Consensus 65 a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~ 144 (444)
.+...|..+...|++++|+..|+++++. +|.+...
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~----------------------------------------- 41 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKT----------------------------------------- 41 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHH-----------------------------------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh----CcccHHH-----------------------------------------
Confidence 4566778888999999999999999887 3322110
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC------CCCCHHHHHHHHHHHHHCCCchHHHHHH
Q 013375 145 LMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGEDLVALNLL 218 (444)
Q Consensus 145 l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~l~~~g~~~~A~~~~ 218 (444)
...++..+|.++...|++++|+..|++++.+ .|....+++.+|.++...|++++|+..|
T Consensus 42 ---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 106 (338)
T 3ro2_A 42 ---------------LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCC 106 (338)
T ss_dssp ---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 0123445566666666666666666665554 3444556666666666666666666666
Q ss_pred HHhhcCCCCCCCh------HHHHHHHHHHhcCCCC--------------------HHHHHHHHHHHHHHcCC-Ccchhhh
Q 013375 219 RTLLSGSEDPKCL------PALLIASKICGEYPDL--------------------AEEGATFASRALECLGD-GCDQMES 271 (444)
Q Consensus 219 ~~al~~~~~P~~~------~a~~~~~~~~~~~~~~--------------------~~eA~~~~~~al~~~~~-~~~~~~~ 271 (444)
++++ .+.|+.. .++..++.++. ..|+ +++|+.+++++++.... .+.....
T Consensus 107 ~~al--~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 183 (338)
T 3ro2_A 107 QRHL--DISRELNDKVGEARALYNLGNVYH-AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQG 183 (338)
T ss_dssp HHHH--HHHHHTTCHHHHHHHHHHHHHHHH-HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHH--HHHHHhcCchHHHHHHHHHHHHHH-HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 6666 4433321 14444444432 2455 66777777777664321 1122335
Q ss_pred HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013375 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS------ILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (444)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~------a~~~lg~~~~~~g~~~~A~~~~~~al~ 345 (444)
.++..+|.++... |++++|+..|++++ .+.|.... +++++|.++...|++++|+..+++++.
T Consensus 184 ~~~~~l~~~~~~~-----------~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 184 RAFGNLGNTHYLL-----------GNFRDAVIAHEQRL-LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----------CCHHHHHHHHHHHH-HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788888888664 67899999999999 88665443 899999999999999999999999999
Q ss_pred hcCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375 346 LEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (444)
Q Consensus 346 l~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 416 (444)
+.|+.. ..++..+|.++..+|++++|+.+++++++..|+. ....++..+|.++..+|++++|...|+++++
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 887641 2688899999999999999999999999886621 1256889999999999999999999999999
Q ss_pred HHHhh
Q 013375 417 ALQVQ 421 (444)
Q Consensus 417 l~~~~ 421 (444)
+.++.
T Consensus 332 ~~~~~ 336 (338)
T 3ro2_A 332 ISREV 336 (338)
T ss_dssp C----
T ss_pred HHHhh
Confidence 98754
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.93 E-value=1.7e-23 Score=196.83 Aligned_cols=239 Identities=14% Similarity=0.068 Sum_probs=209.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----CCCchHHHHHHHHhhcCCCCCCChH
Q 013375 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYG----AGEDLVALNLLRTLLSGSEDPKCLP 232 (444)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~----~g~~~~A~~~~~~al~~~~~P~~~~ 232 (444)
.|.++.+++.+|.++...|++++|+..|+++++ |+++.+++++|.++.. .|++++|+..|++++ ..+ ++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~--~~~--~~~ 75 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC--DLN--YSN 75 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HTT--CHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH--HCC--CHH
Confidence 478999999999999999999999999999998 8899999999999999 999999999999999 554 788
Q ss_pred HHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHH
Q 013375 233 ALLIASKICGE---YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAA 309 (444)
Q Consensus 233 a~~~~~~~~~~---~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al 309 (444)
+++.+|.++.. ..+++++|+.+|+++++. . ...+++.+|.+|..... ..+++++|+..|++++
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~------~~~a~~~lg~~~~~~~~-------~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-K------YAEGCASLGGIYHDGKV-------VTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHHHCSS-------SCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-C------CccHHHHHHHHHHcCCC-------cccCHHHHHHHHHHHH
Confidence 88888877654 168999999999999994 2 25789999999875100 0257899999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHhh
Q 013375 310 RSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAALDQ 381 (444)
Q Consensus 310 ~~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~----~g~~~eA~~~~~~al~~ 381 (444)
+.+ ++.+++++|.++.. .+++++|+..|+++++.+ + ..++..+|.++.. .+++++|+.+++++++.
T Consensus 142 -~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 142 -DLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--D-SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp -HTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred -hcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C-HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 876 78999999999999 999999999999999874 4 4999999999999 99999999999999988
Q ss_pred cCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhhhhhc
Q 013375 382 TGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAALQVQTKTF 425 (444)
Q Consensus 382 ~P~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~ 425 (444)
.| ..+++++|.++.. .+++++|+..|++++++.|+.....
T Consensus 216 ~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 216 EN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp TC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred CC----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 55 5789999999999 9999999999999999988766543
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=5.6e-24 Score=187.82 Aligned_cols=174 Identities=13% Similarity=0.052 Sum_probs=158.8
Q ss_pred CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhH
Q 013375 193 NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMEST 272 (444)
Q Consensus 193 ~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~ 272 (444)
+++.+|+++|.++...|++++|+..|++++ +++|+++.++..+|.++.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~------------------------------ 50 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVL--KADPNNVETLLKLGKTYM------------------------------ 50 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHH------------------------------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHH------------------------------
Confidence 578899999999999999999999999999 899998877765554432
Q ss_pred HHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh
Q 013375 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL 352 (444)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 352 (444)
. .|++++|+..+++++ ..+|+++.++..+|.++...+++++|+..+.+++.++|++ .
T Consensus 51 ----------~-----------~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-~ 107 (184)
T 3vtx_A 51 ----------D-----------IGLPNDAIESLKKFV-VLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY-A 107 (184)
T ss_dssp ----------H-----------TTCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H
T ss_pred ----------H-----------CCCHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-h
Confidence 1 245788999999999 9999999999999999999999999999999999999999 5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
.++..+|.++..+|++++|+..|+++++.+| +++.+|+++|.++..+|++++|+..|++++++.|++..
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKP--GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHhcc--hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 9999999999999999999999999999999 89999999999999999999999999999999997654
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.92 E-value=1.2e-23 Score=190.29 Aligned_cols=218 Identities=17% Similarity=0.023 Sum_probs=195.8
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHH
Q 013375 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL 235 (444)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~ 235 (444)
..|+++.++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++ ..+|+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~ 80 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQAL--SIKPDSAEINN 80 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHH--HhCCCChHHHH
Confidence 4588899999999999999999999999999999999999999999999999999999999999999 89999999998
Q ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC
Q 013375 236 IASKICGEYP-DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (444)
Q Consensus 236 ~~~~~~~~~~-~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P 314 (444)
.++.++. .. |++++|+.+++++++ .+..+ ....+++.+|.++... |++++|+..|++++ +.+|
T Consensus 81 ~l~~~~~-~~~~~~~~A~~~~~~~~~-~~~~~--~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~-~~~~ 144 (225)
T 2vq2_A 81 NYGWFLC-GRLNRPAESMAYFDKALA-DPTYP--TPYIANLNKGICSAKQ-----------GQFGLAEAYLKRSL-AAQP 144 (225)
T ss_dssp HHHHHHH-TTTCCHHHHHHHHHHHHT-STTCS--CHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHST
T ss_pred HHHHHHH-HhcCcHHHHHHHHHHHHc-CcCCc--chHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCC
Confidence 8887754 57 899999999999998 33222 1356788899988664 67899999999999 9999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013375 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG-GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393 (444)
Q Consensus 315 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~ 393 (444)
+++.+++.+|.++...|++++|+..++++++++| ++ ...+..++.++...|++++|..+++.++...| ++..+...
T Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~ 221 (225)
T 2vq2_A 145 QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ-ADDLLLGWKIAKALGNAQAAYEYEAQLQANFP--YSEELQTV 221 (225)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--CCHHHHHH
Confidence 9999999999999999999999999999999999 87 58999999999999999999999999999999 78776654
Q ss_pred H
Q 013375 394 K 394 (444)
Q Consensus 394 l 394 (444)
+
T Consensus 222 l 222 (225)
T 2vq2_A 222 L 222 (225)
T ss_dssp H
T ss_pred h
Confidence 4
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.92 E-value=8.1e-24 Score=195.81 Aligned_cols=216 Identities=14% Similarity=0.024 Sum_probs=168.6
Q ss_pred hCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH
Q 013375 156 RIEWD-PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (444)
Q Consensus 156 ~~p~~-~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~ 234 (444)
.+|.+ +.++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++ ..+|+++.++
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~ 108 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKAL--ASDSRNARVL 108 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCcCcHHHH
Confidence 34554 77889999999999999999999999999999999999999999999999999999999999 8899988888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC
Q 013375 235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (444)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P 314 (444)
..++.++.. .|++++|+.+++++++ .+..+ ....++..+|.++... |++++|+..|++++ +.+|
T Consensus 109 ~~la~~~~~-~g~~~~A~~~~~~~~~-~~~~~--~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~-~~~~ 172 (252)
T 2ho1_A 109 NNYGGFLYE-QKRYEEAYQRLLEASQ-DTLYP--ERSRVFENLGLVSLQM-----------KKPAQAKEYFEKSL-RLNR 172 (252)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTT-CTTCT--THHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCS
T ss_pred HHHHHHHHH-HhHHHHHHHHHHHHHh-CccCc--ccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hcCc
Confidence 777766543 6777888888887776 21111 1245667777776543 46777777777777 7777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013375 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (444)
Q Consensus 315 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~ 392 (444)
+++.+++.+|.++...|++++|+..++++++.+|++ ..++..++.++...|++++|+.+++++++..| ++..++.
T Consensus 173 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~ 247 (252)
T 2ho1_A 173 NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN-ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP--GSLEYQE 247 (252)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TSHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CCHHHHH
Confidence 777777777777777777777777777777777777 47777777777777777777777777777777 6665544
No 48
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.92 E-value=3.5e-24 Score=228.15 Aligned_cols=176 Identities=14% Similarity=0.043 Sum_probs=104.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh
Q 013375 191 IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME 270 (444)
Q Consensus 191 ~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~ 270 (444)
.|+++++|++||.+|..+|++++|+..|++++ +++|++..+++.+|.+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl--~l~P~~~~a~~nLg~~------------------------------ 52 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKAL--EVFPEFAAAHSNLASV------------------------------ 52 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCSCCHHHHHHHHHH------------------------------
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHH------------------------------
Confidence 45566666666666666666666666666666 5566555444433332
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
|.. .|++++|++.|++++ +++|+++.+++++|.++..+|++++|++.|++|++++|++
T Consensus 53 ----------l~~-----------~g~~~eA~~~~~~Al-~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~ 110 (723)
T 4gyw_A 53 ----------LQQ-----------QGKLQEALMHYKEAI-RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110 (723)
T ss_dssp ----------HHH-----------TTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ----------HHH-----------cCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 211 134555666666666 6666666666666666666666666666666666666665
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
..+|.++|.++..+|++++|+..|++|++++| ++..++.++|.++..+|++++|.+.|++++++.+++.+
T Consensus 111 -~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P--~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~~ 180 (723)
T 4gyw_A 111 -ADAHSNLASIHKDSGNIPEAIASYRTALKLKP--DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLE 180 (723)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHHh
Confidence 36666666666666666666666666666666 56666666666666666666666666666666665544
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.92 E-value=1.2e-23 Score=192.97 Aligned_cols=208 Identities=12% Similarity=0.053 Sum_probs=174.5
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHH
Q 013375 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTA 273 (444)
Q Consensus 194 ~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a 273 (444)
.+.+|+.+|.++...|++++|+..|++++ ..+|+++.++..++.++. ..|++++|+..++++++..|.+ ..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l--~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~-----~~~ 93 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAI--EENKEDAIPYINFANLLS-SVNELERALAFYDKALELDSSA-----ATA 93 (243)
T ss_dssp --------------------CCTTHHHHH--TTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC-----HHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHH--HhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCcc-----hHH
Confidence 46788999999999999999999999999 899999999998887765 4789999999999999965543 568
Q ss_pred HHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChH
Q 013375 274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK 353 (444)
Q Consensus 274 ~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 353 (444)
+..+|.++... |++++|+..|++++ +.+|+++.+++.+|.++...|++++|+..++++++++|++ ..
T Consensus 94 ~~~la~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 160 (243)
T 2q7f_A 94 YYGAGNVYVVK-----------EMYKEAKDMFEKAL-RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND-TE 160 (243)
T ss_dssp HHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC-HH
T ss_pred HHHHHHHHHHh-----------ccHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-HH
Confidence 88899988764 67999999999999 9999999999999999999999999999999999999998 59
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375 354 GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 354 ~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
++..+|.++...|++++|+.+++++++..| ++..+++.+|.++...|++++|+..|++++++.|+....
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 229 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAAVTEQDP--GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHH
Confidence 999999999999999999999999999999 899999999999999999999999999999999877654
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.92 E-value=2.9e-23 Score=192.07 Aligned_cols=213 Identities=19% Similarity=0.106 Sum_probs=195.0
Q ss_pred CCCCCC-HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc
Q 013375 189 PGIINR-KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCD 267 (444)
Q Consensus 189 ~~~p~~-~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~ 267 (444)
..+|.+ +.+|+.+|.++...|++++|+..|++++ ..+|+++.++..++.++.. .|++++|+..++++++..|.+
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~-- 104 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL--EIDPSSADAHAALAVVFQT-EMEPKLADEEYRKALASDSRN-- 104 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHH--HHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC--
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH--hcCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCc--
Confidence 446666 8899999999999999999999999999 8999999999988877654 789999999999999975543
Q ss_pred hhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013375 268 QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS--TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (444)
Q Consensus 268 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 345 (444)
..++..+|.++... |++++|+..|++++ . .+|.++.+++.+|.++...|++++|+..|+++++
T Consensus 105 ---~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 105 ---ARVLNNYGGFLYEQ-----------KRYEEAYQRLLEAS-QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp ---HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHT-TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHH-----------hHHHHHHHHHHHHH-hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56888999988764 67999999999999 9 8999999999999999999999999999999999
Q ss_pred hcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375 346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 346 l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
++|++ ..++..+|.++..+|++++|+.+++++++..| ++..++..++.++...|++++|...+++++++.|+....
T Consensus 170 ~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 170 LNRNQ-PSVALEMADLLYKEREYVPARQYYDLFAQGGG--QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred cCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 99998 59999999999999999999999999999999 899999999999999999999999999999998876653
No 51
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=4e-23 Score=198.52 Aligned_cols=216 Identities=13% Similarity=0.027 Sum_probs=134.3
Q ss_pred HHHhhCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHCCCchHHHH
Q 013375 152 VALKRIEWDPSILDHLSFAFSI-------AGDL-------SSLATQIEELLP-GIINRKERYHILALCYYGAGEDLVALN 216 (444)
Q Consensus 152 ~~l~~~p~~~~~~~~lg~~l~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~l~~~g~~~~A~~ 216 (444)
.++..+|.++++|..+|..+.. .|++ ++|+..|+++++ ++|++..+|+.+|.++...|++++|+.
T Consensus 41 ~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~ 120 (308)
T 2ond_A 41 QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS 120 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence 3344455555555555555442 3443 555555555555 455555555555555555555555555
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHh
Q 013375 217 LLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296 (444)
Q Consensus 217 ~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 296 (444)
+|++++ .++|+++. .+|..+|.++.. .|
T Consensus 121 ~~~~al--~~~p~~~~---------------------------------------~~~~~~~~~~~~-----------~~ 148 (308)
T 2ond_A 121 IYNRLL--AIEDIDPT---------------------------------------LVYIQYMKFARR-----------AE 148 (308)
T ss_dssp HHHHHH--TSSSSCTH---------------------------------------HHHHHHHHHHHH-----------HH
T ss_pred HHHHHH--hccccCcc---------------------------------------HHHHHHHHHHHH-----------hc
Confidence 555555 45554443 134444444432 24
Q ss_pred hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013375 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAE-QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (444)
Q Consensus 297 ~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~ 375 (444)
++++|+..|++++ +.+|.++.+|...+.+... .|++++|+..|+++++++|++ ..+|..+|.++..+|++++|+.+|
T Consensus 149 ~~~~A~~~~~~a~-~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~ 226 (308)
T 2ond_A 149 GIKSGRMIFKKAR-EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYLSHLNEDNNTRVLF 226 (308)
T ss_dssp CHHHHHHHHHHHH-TSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5677777777777 7777777766655555433 577777777777777777777 477777777777777777777777
Q ss_pred HHHHhh---cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375 376 NAALDQ---TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 376 ~~al~~---~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
++++.. .|+ +...+|...+..+...|++++|...+++++++.|+..
T Consensus 227 ~~al~~~~l~p~-~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 227 ERVLTSGSLPPE-KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHSSSSCGG-GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHhccCCCHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 777774 441 2466777777777777777777777777777777644
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.92 E-value=3.4e-24 Score=212.88 Aligned_cols=288 Identities=14% Similarity=0.036 Sum_probs=230.2
Q ss_pred HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q 013375 8 LLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYR 87 (444)
Q Consensus 8 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~ 87 (444)
..+..++.+|.++...|++++|+..|+++++. .|... .....++..+|.+|...|++++|+..|+
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--------~~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 110 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQA--------GTEDL-------RTLSAIYSQLGNAYFYLGDYNKAMQYHK 110 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCSCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh--------cccCh-------hHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45677889999999999999999999999987 23211 1234678899999999999999999999
Q ss_pred HHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013375 88 RALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHL 167 (444)
Q Consensus 88 ~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~l 167 (444)
++++. ... ....|....++..+
T Consensus 111 ~al~~----~~~------------------------------------------------------~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 111 HDLTL----AKS------------------------------------------------------MNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHH----HHH------------------------------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHH----HHH------------------------------------------------------ccCchHHHHHHHHH
Confidence 99886 100 00012234567788
Q ss_pred HHHHHhcCCHHHHHHHHHhhcCC------CCCCHHHHHHHHHHHHHCCC-----------------chHHHHHHHHhhcC
Q 013375 168 SFAFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGE-----------------DLVALNLLRTLLSG 224 (444)
Q Consensus 168 g~~l~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~l~~~g~-----------------~~~A~~~~~~al~~ 224 (444)
|.++...|++++|+..|++++.+ .|....+++++|.++...|+ +++|+..|++++
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al-- 210 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL-- 210 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH--
Confidence 88999999999999999998887 66677789999999999999 889999888887
Q ss_pred CCC------CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhhhhhhhhhhhhchHHHHhh
Q 013375 225 SED------PKCLPALLIASKICGEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATR 297 (444)
Q Consensus 225 ~~~------P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 297 (444)
.+. |....++..+|.++. ..|++++|+.+++++++..+.. .......++..+|.++... |+
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-----------g~ 278 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYY-LLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFL-----------GQ 278 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT-----------TC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHC-----------cC
Confidence 443 233446666666654 4688999999999998865432 1122345788899888765 57
Q ss_pred HHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHcc
Q 013375 298 QAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQK 366 (444)
Q Consensus 298 ~~eA~~~~~~al~~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~g 366 (444)
+++|+..|++++ .+.|.. ..++..+|.++..+|++++|+.+|++++++.++.. ..++..+|.++..+|
T Consensus 279 ~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 357 (411)
T 4a1s_A 279 FEDAAEHYKRTL-ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG 357 (411)
T ss_dssp HHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Confidence 899999999999 988865 78899999999999999999999999999876531 258899999999999
Q ss_pred CHHHHHHHHHHHHhhcC
Q 013375 367 RYEDAETILNAALDQTG 383 (444)
Q Consensus 367 ~~~eA~~~~~~al~~~P 383 (444)
++++|+.++++++++.+
T Consensus 358 ~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 358 GHERALKYAEQHLQLAX 374 (411)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 99999999999999988
No 53
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.92 E-value=4e-24 Score=204.39 Aligned_cols=287 Identities=12% Similarity=0.002 Sum_probs=224.8
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q 013375 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR 88 (444)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~ 88 (444)
-+..++.+|.++...|++++|+..|+++++. .|.. .+....++..+|.++...|++++|+..|++
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--------~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 68 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQV--------GTED-------LKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCSC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--------Cccc-------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4568899999999999999999999999986 2321 112346788999999999999999999999
Q ss_pred HhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013375 89 ALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLS 168 (444)
Q Consensus 89 aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg 168 (444)
++.. .... ...|....++..+|
T Consensus 69 al~~----~~~~------------------------------------------------------~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 69 DLTL----ARTI------------------------------------------------------GDQLGEAKASGNLG 90 (338)
T ss_dssp HHHH----HHHH------------------------------------------------------TCHHHHHHHHHHHH
T ss_pred HHHH----hhcc------------------------------------------------------cccHHHHHHHHHHH
Confidence 9886 1100 00122244677888
Q ss_pred HHHHhcCCHHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHHCCC--------------------chHHHHHHHHhh
Q 013375 169 FAFSIAGDLSSLATQIEELLPGIINR------KERYHILALCYYGAGE--------------------DLVALNLLRTLL 222 (444)
Q Consensus 169 ~~l~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~l~~~g~--------------------~~~A~~~~~~al 222 (444)
.++...|++++|+..|++++++.|.. ..+++.+|.++...|+ +++|+..+++++
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 88889999999999998888775543 3488889999999999 888888888887
Q ss_pred cCCC------CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhhhhhhhhhhhhchHHHH
Q 013375 223 SGSE------DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRA 295 (444)
Q Consensus 223 ~~~~------~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~ 295 (444)
.+ .|....++..++.++. ..|++++|+.+++++++..+.. .......++..+|.++...
T Consensus 171 --~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 236 (338)
T 3ro2_A 171 --SLVTALGDRAAQGRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL----------- 236 (338)
T ss_dssp --HHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----------
T ss_pred --HHHHhcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-----------
Confidence 44 2333445666666554 4688999999999998864331 1223355788888888664
Q ss_pred hhHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHH
Q 013375 296 TRQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSA 364 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~ 364 (444)
|++++|+..|++++ .+.|.. +.++..+|.++...|++++|+..+++++++.|... ..++..+|.++..
T Consensus 237 g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 315 (338)
T 3ro2_A 237 GEFETASEYYKKTL-LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 315 (338)
T ss_dssp TCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 67999999999999 888776 78899999999999999999999999999876531 2488899999999
Q ss_pred ccCHHHHHHHHHHHHhhcC
Q 013375 365 QKRYEDAETILNAALDQTG 383 (444)
Q Consensus 365 ~g~~~eA~~~~~~al~~~P 383 (444)
+|++++|+.++++++++.+
T Consensus 316 ~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 316 LGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HTCHHHHHHHHHHHHHC--
T ss_pred cCChHHHHHHHHHHHHHHH
Confidence 9999999999999999887
No 54
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.91 E-value=2.8e-24 Score=228.84 Aligned_cols=173 Identities=14% Similarity=0.035 Sum_probs=154.1
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHH
Q 013375 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALL 235 (444)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~ 235 (444)
..|+++++|++||.++..+|++++|+++|+++++++|+++.+|++||.+|..+|++++|+..|++++ +++|+++.+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al--~l~P~~~~a~~ 81 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI--RISPTFADAYS 81 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHH
Confidence 3599999999999999999999999999999999999999999999999999999999999999999 89999887776
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC
Q 013375 236 IASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR 315 (444)
Q Consensus 236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~ 315 (444)
.+|.++ .. .|++++|++.|++++ +++|+
T Consensus 82 nLg~~l----------------------------------------~~-----------~g~~~~A~~~~~kAl-~l~P~ 109 (723)
T 4gyw_A 82 NMGNTL----------------------------------------KE-----------MQDVQGALQCYTRAI-QINPA 109 (723)
T ss_dssp HHHHHH----------------------------------------HH-----------TTCHHHHHHHHHHHH-HHCTT
T ss_pred HHHHHH----------------------------------------HH-----------cCCHHHHHHHHHHHH-HhCCC
Confidence 555443 22 245788888899999 89999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 316 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
++.+++++|.++..+|++++|+..|++|++++|++ ..+|.++|.++..+|++++|+..+++++++.|
T Consensus 110 ~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF-PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 99999999999999999999999999999999998 59999999999999999999999999988876
No 55
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.91 E-value=3e-23 Score=189.80 Aligned_cols=217 Identities=12% Similarity=0.067 Sum_probs=177.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHH
Q 013375 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGII-NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236 (444)
Q Consensus 158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~ 236 (444)
|.+++++..+|.++...|++++|+..|++++.++| .++.+++++|.++...|++++|+..|++++ ..+|+++.++..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI--KKNYNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTTCSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH--HhCcchHHHHHH
Confidence 67889999999999999999999999999999999 999999999999999999999999999999 899999999988
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcch--hhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC
Q 013375 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQ--MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (444)
Q Consensus 237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~--~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P 314 (444)
+|.++. ..|++++|+..++++++..|.+... ....+++.+|.++ ...|++++|++.|++++ +++|
T Consensus 82 l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~-----------~~~~~~~~A~~~~~~al-~~~p 148 (228)
T 4i17_A 82 KSAAYR-DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKF-----------QQAGNIEKAEENYKHAT-DVTS 148 (228)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-----------HHTTCHHHHHHHHHHHT-TSSC
T ss_pred HHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHH-----------HHhccHHHHHHHHHHHH-hcCC
Confidence 887765 4688999999999999976554211 1124566666665 34788999999999999 8999
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013375 315 R--DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (444)
Q Consensus 315 ~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~ 392 (444)
+ ++.+++++|.++...| ...++++..+.+.+ ...+ .+......+.|++|+.+++++++++| ++..++.
T Consensus 149 ~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~-~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p--~~~~~~~ 218 (228)
T 4i17_A 149 KKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSN-KEKY--ASEKAKADAAFKKAVDYLGEAVTLSP--NRTEIKQ 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTC-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred CcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCC-HHHH--HHHHHHHHHHHHHHHHHHHHHhhcCC--CCHHHHH
Confidence 9 8899999999987654 45577788887775 2444 34445667888999999999999999 8888888
Q ss_pred HHHHHHH
Q 013375 393 TKAKVQL 399 (444)
Q Consensus 393 ~la~~~~ 399 (444)
.++.+..
T Consensus 219 ~l~~i~~ 225 (228)
T 4i17_A 219 MQDQVKA 225 (228)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 7777653
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.91 E-value=5.8e-24 Score=198.85 Aligned_cols=233 Identities=15% Similarity=0.042 Sum_probs=202.7
Q ss_pred HHHHHhcCCHHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhc
Q 013375 168 SFAFSIAGDLSSLATQIEELLPG----IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGE 243 (444)
Q Consensus 168 g~~l~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~ 243 (444)
+..+...|++++|+..|+++++. +|.++.+|+.+|.++...|++++|+..|++++ ..+|+++.++..+|.++.
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~- 88 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL--AIRPDMPEVFNYLGIYLT- 88 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHH-
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHH-
Confidence 33455678999999999999998 45678999999999999999999999999999 899999999998888765
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013375 244 YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL 323 (444)
Q Consensus 244 ~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~l 323 (444)
..|++++|+.+|+++++..|.+ ..+++.+|.++... |++++|+..|++++ +++|+++.....+
T Consensus 89 ~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~-----------g~~~~A~~~~~~a~-~~~~~~~~~~~~~ 151 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDPTY-----NYAHLNRGIALYYG-----------GRDKLAQDDLLAFY-QDDPNDPFRSLWL 151 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC-----THHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHhcCccc-----cHHHHHHHHHHHHh-----------ccHHHHHHHHHHHH-HhCCCChHHHHHH
Confidence 4789999999999999976544 57899999998764 67999999999999 9999999887777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC--CcHHHHHHHHHHHHHh
Q 013375 324 SLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW--EQGELLRTKAKVQLVQ 401 (444)
Q Consensus 324 g~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~--~~~~~~~~la~~~~~~ 401 (444)
+.. ...|++++|+..+++++...|++. ..|. ++.++...+++++|+..+++++...|+. ++..+++.+|.++..+
T Consensus 152 ~~~-~~~~~~~~A~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 228 (275)
T 1xnf_A 152 YLA-EQKLDEKQAKEVLKQHFEKSDKEQ-WGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL 228 (275)
T ss_dssp HHH-HHHHCHHHHHHHHHHHHHHSCCCS-THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH-HHhcCHHHHHHHHHHHHhcCCcch-HHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc
Confidence 755 666999999999999999999984 6665 7778888999999999999999887710 2278999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhhh
Q 013375 402 GQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 402 g~~~~A~~~~~~al~l~~~~~~ 423 (444)
|++++|+..|++++++.|+...
T Consensus 229 g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 229 GDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp TCHHHHHHHHHHHHTTCCTTCH
T ss_pred CCHHHHHHHHHHHHhCCchhHH
Confidence 9999999999999999886544
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=2.2e-22 Score=193.37 Aligned_cols=187 Identities=7% Similarity=-0.101 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHH-HHHHHHHHHHHCCCchHHHH
Q 013375 139 EEAILLLMILLRKVALK-RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKE-RYHILALCYYGAGEDLVALN 216 (444)
Q Consensus 139 ~eAi~~l~~~~~~~~l~-~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~l~~~g~~~~A~~ 216 (444)
++|+..+ +.++. ..|++..+|..+|.++...|++++|.+.|+++++++|++++ +|.++|.++.+.|++++|+.
T Consensus 81 ~~A~~~~-----~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 155 (308)
T 2ond_A 81 DEAANIY-----ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHH-----HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHH-----HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHH
Confidence 7888775 55667 68999999999999999999999999999999999999997 99999999999999999999
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHh
Q 013375 217 LLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRAT 296 (444)
Q Consensus 217 ~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 296 (444)
.|++++ +.+|.+..+++..+.+.+...|+
T Consensus 156 ~~~~a~--~~~p~~~~~~~~~a~~~~~~~~~------------------------------------------------- 184 (308)
T 2ond_A 156 IFKKAR--EDARTRHHVYVTAALMEYYCSKD------------------------------------------------- 184 (308)
T ss_dssp HHHHHH--TSTTCCTHHHHHHHHHHHHTSCC-------------------------------------------------
T ss_pred HHHHHH--hcCCCCHHHHHHHHHHHHHHcCC-------------------------------------------------
Confidence 999999 89998877665443332222334
Q ss_pred hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cCCCChHHHHHHHHHHHHccCHHHHHH
Q 013375 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL---EGGSNLKGWLLMARILSAQKRYEDAET 373 (444)
Q Consensus 297 ~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~~la~~l~~~g~~~eA~~ 373 (444)
+++|+..|++++ +.+|+++.+|..+|.++...|++++|+..|++++.. +|+.....|..++.++...|++++|..
T Consensus 185 -~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 185 -KSVAFKIFELGL-KKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp -HHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred -HHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555555 555655556655555555556666666666666553 333113555555555555566666666
Q ss_pred HHHHHHhhcC
Q 013375 374 ILNAALDQTG 383 (444)
Q Consensus 374 ~~~~al~~~P 383 (444)
+++++++..|
T Consensus 263 ~~~~a~~~~p 272 (308)
T 2ond_A 263 VEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcc
Confidence 6666665555
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.90 E-value=4.1e-22 Score=180.07 Aligned_cols=214 Identities=19% Similarity=0.121 Sum_probs=191.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh
Q 013375 190 GIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQM 269 (444)
Q Consensus 190 ~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~ 269 (444)
.+|+++.+|+.+|.++...|++++|+..|++++ ..+|+++.++..++.++. ..|++++|+.+++++++..|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~---- 75 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDAL--KSDPKNELAWLVRAEIYQ-YLKVNDKAQESFRQALSIKPDS---- 75 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC----
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HhCccchHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCC----
Confidence 468899999999999999999999999999999 899999999988887765 4789999999999999975543
Q ss_pred hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013375 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS--TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (444)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 347 (444)
..++..+|.++... .|++++|+..|++++ + .+|+++.+++.+|.++...|++++|+..|+++++.+
T Consensus 76 -~~~~~~l~~~~~~~----------~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 143 (225)
T 2vq2_A 76 -AEINNNYGWFLCGR----------LNRPAESMAYFDKAL-ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143 (225)
T ss_dssp -HHHHHHHHHHHHTT----------TCCHHHHHHHHHHHH-TSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -hHHHHHHHHHHHHh----------cCcHHHHHHHHHHHH-cCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 46788899888654 056899999999999 9 777889999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375 348 GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 348 P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
|++ ..+|..+|.++...|++++|+.+++++++..|. ++...+..++.++...|+.++|...++.++++.|+....
T Consensus 144 ~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 144 PQF-PPAFKELARTKMLAGQLGDADYYFKKYQSRVEV-LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp TTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 999 599999999999999999999999999999982 367788889999999999999999999999988876653
No 59
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.90 E-value=1.4e-21 Score=183.75 Aligned_cols=206 Identities=14% Similarity=0.067 Sum_probs=159.8
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----CCCchHHHHHHHHhhcCCCCCC
Q 013375 158 EWDPSILDHLSFAFSI----AGDLSSLATQIEELLPGIINRKERYHILALCYYG----AGEDLVALNLLRTLLSGSEDPK 229 (444)
Q Consensus 158 p~~~~~~~~lg~~l~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~----~g~~~~A~~~~~~al~~~~~P~ 229 (444)
|.++.++..+|.++.. .|++++|+..|+++++.+ ++.+++++|.++.. .|++++|+..|++++ .. +
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~--~~--~ 108 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC--DL--K 108 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HT--T
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH--Hc--C
Confidence 4445566777777777 888888888888887764 78888888888888 888888888888888 44 4
Q ss_pred ChHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHH
Q 013375 230 CLPALLIASKICGE---YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV 306 (444)
Q Consensus 230 ~~~a~~~~~~~~~~---~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~ 306 (444)
++.+++.+|.++.. ..+++++|+.+|+++++.. + ..+++.+|.+|..... ..+++++|+..|+
T Consensus 109 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~------~~a~~~lg~~~~~~~~-------~~~~~~~A~~~~~ 174 (273)
T 1ouv_A 109 YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-D------GDGCTILGSLYDAGRG-------TPKDLKKALASYD 174 (273)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-C------HHHHHHHHHHHHHTSS-------SCCCHHHHHHHHH
T ss_pred CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-c------HHHHHHHHHHHHcCCC-------CCCCHHHHHHHHH
Confidence 67777777766543 1577888888888888742 1 4577788887764100 0256899999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHH
Q 013375 307 SAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAA 378 (444)
Q Consensus 307 ~al~~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~----~g~~~eA~~~~~~a 378 (444)
+++ +. +++.+++++|.++.. .+++++|+..|+++++.+| ..++..+|.++.. .+++++|+.+|++|
T Consensus 175 ~a~-~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 175 KAC-DL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp HHH-HT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred HHH-HC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 999 76 568899999999999 9999999999999998865 3889999999998 89999999999999
Q ss_pred HhhcCCCCcHHHH
Q 013375 379 LDQTGKWEQGELL 391 (444)
Q Consensus 379 l~~~P~~~~~~~~ 391 (444)
++..| ++...+
T Consensus 249 ~~~~~--~~a~~~ 259 (273)
T 1ouv_A 249 CKLGA--KGACDI 259 (273)
T ss_dssp HHHTC--HHHHHH
T ss_pred HHcCC--HHHHHH
Confidence 99988 554433
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=3.5e-22 Score=203.86 Aligned_cols=226 Identities=12% Similarity=-0.008 Sum_probs=189.3
Q ss_pred HhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcH-HHHHHHHHHHHHHHH
Q 013375 75 LADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNI-EEAILLLMILLRKVA 153 (444)
Q Consensus 75 ~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~eAi~~l~~~~~~~~ 153 (444)
..+++++|+..+++++.. +|.+.. ....++. .+...|++ ++|+..+ +.+
T Consensus 80 ~~~~~~~al~~l~~~~~~----~~~~a~-~~~~lg~--------------------~~~~~g~~~~~A~~~~-----~~a 129 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVLGS----AQVEAQ-ALMLKGK--------------------ALNVTPDYSPEAEVLL-----SKA 129 (474)
T ss_dssp HHHHHHHHHHHHHHHHTT----CCCCHH-HHHHHHH--------------------HHTSSSSCCHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHHHHHhcc----CchhHH-HHHHHHH--------------------HHHhccccHHHHHHHH-----HHH
Confidence 355678889999988887 443222 2233443 34456788 9999886 556
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC---------CCchHHHHHHHHhhcC
Q 013375 154 LKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGA---------GEDLVALNLLRTLLSG 224 (444)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~---------g~~~~A~~~~~~al~~ 224 (444)
+..+|+++++|..+|.++...|++++|+.+|+++++++|+ ..+|+++|.++... |++++|+..|++++
T Consensus 130 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al-- 206 (474)
T 4abn_A 130 VKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV-- 206 (474)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH--
T ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH--
Confidence 7889999999999999999999999999999999999999 79999999999999 99999999999999
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHH
Q 013375 225 SEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQA 304 (444)
Q Consensus 225 ~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~ 304 (444)
.++|+++.++..+|.++... ++..|. ..+++++|+..
T Consensus 207 ~~~p~~~~~~~~lg~~~~~~-----------------------------~~~~~~--------------~~g~~~~A~~~ 243 (474)
T 4abn_A 207 QMDVLDGRSWYILGNAYLSL-----------------------------YFNTGQ--------------NPKISQQALSA 243 (474)
T ss_dssp HHCTTCHHHHHHHHHHHHHH-----------------------------HHHTTC--------------CHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHH-----------------------------HHhhcc--------------ccchHHHHHHH
Confidence 89999998887776654321 111111 02578999999
Q ss_pred HHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375 305 LVSAARSTNM---RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (444)
Q Consensus 305 ~~~al~~~~P---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~a 378 (444)
|++++ +++| +++.+|+++|.++..+|++++|+..|+++++++|++ ..+|..++.++..+|++++|+..+.+.
T Consensus 244 ~~~al-~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 244 YAQAE-KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW-PEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHH-HHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHH-HhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999 9999 999999999999999999999999999999999999 599999999999999999999876543
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.90 E-value=5.6e-23 Score=203.19 Aligned_cols=242 Identities=10% Similarity=0.022 Sum_probs=203.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCC------CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC------
Q 013375 163 ILDHLSFAFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC------ 230 (444)
Q Consensus 163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~------ 230 (444)
.++.+|..+...|++++|+..|++++++ .+..+.+++++|.++...|++++|+..+++++ .+.++.
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~ 182 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY--EIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHTCSTTHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHhCccchHH
Confidence 4456999999999999999999999987 33356899999999999999999999999999 664443
Q ss_pred -hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHH
Q 013375 231 -LPALLIASKICGEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (444)
Q Consensus 231 -~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~a 308 (444)
..++..+|.++ ...|++++|+.+++++++..+.. +......+++++|.+|..+ |++++|+..|+++
T Consensus 183 ~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-----------g~~~~A~~~~~~a 250 (383)
T 3ulq_A 183 LLQCHSLFATNF-LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ-----------SQYEDAIPYFKRA 250 (383)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHH
Confidence 34566666665 55799999999999999975432 2334567899999999765 6799999999999
Q ss_pred HHh-----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-----CCChHHHHHHHHHHHHccC---HHHHHHH
Q 013375 309 ARS-----TN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG-----GSNLKGWLLMARILSAQKR---YEDAETI 374 (444)
Q Consensus 309 l~~-----~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-----~~~~~~~~~la~~l~~~g~---~~eA~~~ 374 (444)
+ + .+ |..+.+++++|.++..+|++++|+.++++++++.+ .. ...+..+|.++...|+ +++|+..
T Consensus 251 l-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~al~~ 328 (383)
T 3ulq_A 251 I-AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY-LSEFEFLKSLYLSGPDEEAIQGFFDF 328 (383)
T ss_dssp H-HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred H-HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9 8 57 88899999999999999999999999999999853 33 2446789999999999 8888888
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 375 LNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 375 ~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
+++. ...| +...++..+|.++..+|++++|+..|++++++.++-.+
T Consensus 329 ~~~~-~~~~--~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 329 LESK-MLYA--DLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp HHHT-TCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHC-cCHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 8887 4445 56788999999999999999999999999999886544
No 62
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.89 E-value=2.8e-23 Score=197.35 Aligned_cols=246 Identities=15% Similarity=0.073 Sum_probs=195.1
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC--------CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCC-
Q 013375 156 RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG--------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSE- 226 (444)
Q Consensus 156 ~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~- 226 (444)
.+|....++..+|.++...|++++|+..|++++++ .|....+++.+|.++...|++++|+..|++++ ..
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~ 99 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL--AIR 99 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHH
Confidence 34677789999999999999999999999999984 78888999999999999999999999999999 55
Q ss_pred -------CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-----CCCcchhhhHHHHHhhhhhhhhhhhhhchHHH
Q 013375 227 -------DPKCLPALLIASKICGEYPDLAEEGATFASRALECL-----GDGCDQMESTANCLLGISLSAQSKVAITDFDR 294 (444)
Q Consensus 227 -------~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~-----~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~ 294 (444)
+|....++..++.++ ...|++++|+.+++++++.. +.+ .....++..+|.++...
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~~la~~~~~~---------- 166 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLY-GKRGKYKEAEPLCKRALEIREKVLGKDH--PDVAKQLNNLALLCQNQ---------- 166 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHTT----------
T ss_pred HHHhCCCChHHHHHHHHHHHHH-HHcCcHHHHHHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHHc----------
Confidence 355566777777765 55799999999999999964 221 23467888999998765
Q ss_pred HhhHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC---------CC-----h
Q 013375 295 ATRQAKALQALVSAARST--------NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG---------SN-----L 352 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---------~~-----~ 352 (444)
|++++|+..|++++ .+ +|..+.+++.+|.++...|++++|+..|++++++.|+ .. .
T Consensus 167 -~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 244 (311)
T 3nf1_A 167 -GKYEEVEYYYQRAL-EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA 244 (311)
T ss_dssp -TCHHHHHHHHHHHH-HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH
T ss_pred -CCHHHHHHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Confidence 57899999999999 88 7888889999999999999999999999999986543 21 1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
..+..++..+...+++.+|+..+.+++...| ....++..+|.++..+|++++|+..|++++++.|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSP--TVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHC-------CCSCCCC---------CH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhhcCCCCc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 2333444455566777788889999999999 89999999999999999999999999999999874
No 63
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.89 E-value=4.9e-22 Score=201.55 Aligned_cols=226 Identities=12% Similarity=-0.017 Sum_probs=175.3
Q ss_pred CCCHHHHHHHHHHHHhcCC----HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC---CchHHHHHHHHhhcCCCCCCC
Q 013375 158 EWDPSILDHLSFAFSIAGD----LSSLATQIEELLPGIINRKERYHILALCYYGAG---EDLVALNLLRTLLSGSEDPKC 230 (444)
Q Consensus 158 p~~~~~~~~lg~~l~~~g~----~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g---~~~~A~~~~~~al~~~~~P~~ 230 (444)
+.++.+++.+|.++...+. .+.+...++.+...+|. ++++||.+|...| ++++|+..|++++ ...|..
T Consensus 138 ~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa--~~g~~~ 212 (452)
T 3e4b_A 138 AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGV--SRGTVT 212 (452)
T ss_dssp HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTTCSC
T ss_pred CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHH--HCCCHH
Confidence 4567788888888888874 44555567777766655 8899999999999 8899999999999 788888
Q ss_pred hHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHH
Q 013375 231 LPALLIASKICGEYP----DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV 306 (444)
Q Consensus 231 ~~a~~~~~~~~~~~~----~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~ 306 (444)
...++.+|.++ ... +++++|+.+|+++. +.+ ..+++.+|.+|.... ..+++++|+..|+
T Consensus 213 a~~~~~Lg~~y-~~g~~~~~d~~~A~~~~~~aa---~g~-----~~a~~~Lg~~~~~~~--------~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 213 AQRVDSVARVL-GDATLGTPDEKTAQALLEKIA---PGY-----PASWVSLAQLLYDFP--------ELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHHHHH-TCGGGSSCCHHHHHHHHHHHG---GGS-----THHHHHHHHHHHHSG--------GGCCHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCCCCCCCHHHHHHHHHHHc---CCC-----HHHHHHHHHHHHhCC--------CCCCHHHHHHHHH
Confidence 87767777665 333 68889999999987 332 468888888844211 1367889999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----ccCHHHHHHHHHH
Q 013375 307 SAARSTNMRDLSILYRLSLEYAEQR-----KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNA 377 (444)
Q Consensus 307 ~al~~~~P~~~~a~~~lg~~~~~~g-----~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~----~g~~~eA~~~~~~ 377 (444)
+++ +. +++.++++||.+|. .| ++++|+.+|+++. |++ ..++++||.+|.. ..++++|+.+|++
T Consensus 276 ~Aa-~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~-~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 276 NGR-AA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GRE-VAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHH-HT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTC-HHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHH-HC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 988 54 58899999998888 55 8999999999998 787 4899999988876 3489999999999
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 013375 378 ALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAA 417 (444)
Q Consensus 378 al~~~P~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l 417 (444)
|.+. .++.+++++|.++.. ..++++|..+|+++.+.
T Consensus 348 Aa~~----g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 348 AARN----GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HHTT----TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHhh----ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 8863 456788889988864 45888999999888753
No 64
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=4.3e-20 Score=190.69 Aligned_cols=161 Identities=12% Similarity=0.053 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHH-------HHHHHHHHHHHh-hCCCCHHHHH
Q 013375 250 EGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQA-------KALQALVSAARS-TNMRDLSILY 321 (444)
Q Consensus 250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~-------eA~~~~~~al~~-~~P~~~~a~~ 321 (444)
+++..|++++...|.+ ..+|+.+|..+....... ...|+++ +|+..|++++ + ++|+++.+|+
T Consensus 256 ~a~~~y~~al~~~p~~-----~~~w~~~~~~~~~~~~~~----~~~g~~~~a~~~~~~A~~~~~~Al-~~~~p~~~~l~~ 325 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHH-----PDIWYEAAQYLEQSSKLL----AEKGDMNNAKLFSDEAANIYERAI-STLLKKNMLLYF 325 (530)
T ss_dssp HHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHH----HTTTCCHHHHHHHHHHHHHHHHHT-TTTCSSCHHHHH
T ss_pred HHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhchhh----hhccchhhhhhhhHHHHHHHHHHH-HHhCcccHHHHH
Confidence 6677888888866544 467888887765410000 0023333 7788888888 7 6788888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH-HH
Q 013375 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ-LV 400 (444)
Q Consensus 322 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~-~~ 400 (444)
.+|.++...|++++|...|+++++++|+++..+|..+|.++..+|++++|+.+|++|++..| .+...+...+.+. ..
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~--~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT--CCTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC--CchHHHHHHHHHHHHH
Confidence 88888888888888888888888887776324777777777777777777777777777766 5555555544442 34
Q ss_pred hCCHHHHHHHHHHHHHHHHhhh
Q 013375 401 QGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 401 ~g~~~~A~~~~~~al~l~~~~~ 422 (444)
.|++++|...|+++++..|++.
T Consensus 404 ~~~~~~A~~~~e~al~~~p~~~ 425 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKYGDIP 425 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCH
T ss_pred cCChhHHHHHHHHHHHHCCCCH
Confidence 6777777777777777776543
No 65
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.89 E-value=1.1e-21 Score=183.32 Aligned_cols=208 Identities=13% Similarity=0.045 Sum_probs=157.0
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh
Q 013375 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR---KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL 231 (444)
Q Consensus 155 ~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~ 231 (444)
...|.+++.++.+|..+...|++++|+..|+++++.+|++ +.+++.+|.++..+|++++|+..|++++ ..+|+++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l--~~~p~~~ 86 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFI--QIYQIDP 86 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH--HHCCCCc
Confidence 3456777777777777777777777777777777777777 7777777777777777777777777777 6666543
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh
Q 013375 232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (444)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~ 311 (444)
.. ..+++.+|.++...+... ....|++++|+..|++++ .
T Consensus 87 ~~-------------------------------------~~a~~~lg~~~~~~~~~~---~~~~~~~~~A~~~~~~~l-~ 125 (261)
T 3qky_A 87 RV-------------------------------------PQAEYERAMCYYKLSPPY---ELDQTDTRKAIEAFQLFI-D 125 (261)
T ss_dssp TH-------------------------------------HHHHHHHHHHHHHHCCCT---TSCCHHHHHHHHHHHHHH-H
T ss_pred hh-------------------------------------HHHHHHHHHHHHHhcccc---cccchhHHHHHHHHHHHH-H
Confidence 21 234455555554310000 001367999999999999 9
Q ss_pred hCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHc-------
Q 013375 312 TNMRDLSIL-----------------YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--LKGWLLMARILSAQ------- 365 (444)
Q Consensus 312 ~~P~~~~a~-----------------~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~~la~~l~~~------- 365 (444)
.+|+++.+. +.+|.++...|++++|+..|+++++..|+++ ..++..+|.++..+
T Consensus 126 ~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~ 205 (261)
T 3qky_A 126 RYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRA 205 (261)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGG
T ss_pred HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhh
Confidence 999998777 8899999999999999999999999999952 36899999999977
Q ss_pred ---cCHHHHHHHHHHHHhhcCCCCcH---HHHHHHHHHHHHhCCHHHH
Q 013375 366 ---KRYEDAETILNAALDQTGKWEQG---ELLRTKAKVQLVQGQLKGA 407 (444)
Q Consensus 366 ---g~~~eA~~~~~~al~~~P~~~~~---~~~~~la~~~~~~g~~~~A 407 (444)
|++++|+..|+++++.+| ++. .+...++.+...+++++++
T Consensus 206 ~~~~~~~~A~~~~~~~~~~~p--~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 206 RQPERYRRAVELYERLLQIFP--DSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp GHHHHHHHHHHHHHHHHHHCT--TCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccchHHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999 663 5556666676666666543
No 66
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.89 E-value=1e-22 Score=216.76 Aligned_cols=188 Identities=9% Similarity=-0.080 Sum_probs=120.0
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc--------CCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCC
Q 013375 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELL--------PGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSE 226 (444)
Q Consensus 155 ~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~ 226 (444)
..+|+++.++...| ...|++++|++.|++++ +.+|+++++|+.+|.++..+|++++|+..|++++ +.
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al--~~ 462 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLA--ER 462 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH--HH
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHh--cc
Confidence 45678888887766 77899999999999999 8889999999999999999999999999999999 78
Q ss_pred CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHH
Q 013375 227 DPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALV 306 (444)
Q Consensus 227 ~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~ 306 (444)
+|++..+++.+|.+++. .|++++|+..|+++++..|.+ ..+++++|.++... |++++ ++.|+
T Consensus 463 ~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~-----~~~~~~lg~~~~~~-----------g~~~~-~~~~~ 524 (681)
T 2pzi_A 463 VGWRWRLVWYRAVAELL-TGDYDSATKHFTEVLDTFPGE-----LAPKLALAATAELA-----------GNTDE-HKFYQ 524 (681)
T ss_dssp HCCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTC-----SHHHHHHHHHHHHH-----------TCCCT-TCHHH
T ss_pred CcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHc-----------CChHH-HHHHH
Confidence 88888877766655433 455555555555555533322 23455555554432 33445 55555
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccC
Q 013375 307 SAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKR 367 (444)
Q Consensus 307 ~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~ 367 (444)
+++ +++|+++.+++++|.++..+|++++|+..|+++++++|++ ..+|.++|.++...|+
T Consensus 525 ~al-~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 525 TVW-STNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF-TTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH-HHHHHHHHHHTC----
T ss_pred HHH-HhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc-HHHHHHHHHHHHccCC
Confidence 555 5555555555555555555555555555555555555554 3555555555544444
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=1e-21 Score=179.57 Aligned_cols=205 Identities=9% Similarity=-0.006 Sum_probs=174.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCC-CChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh
Q 013375 191 IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP-KCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQM 269 (444)
Q Consensus 191 ~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P-~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~ 269 (444)
.+.++++++++|.++...|++++|+..|++++ .++| .+..+++.+|.++ ...|++++|+.+++++++..|.
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~----- 74 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYL--KLTNNQDSVTAYNCGVCA-DNIKKYKEAADYFDIAIKKNYN----- 74 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHTTTCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTTCS-----
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHH--hccCCCCcHHHHHHHHHH-HHhhcHHHHHHHHHHHHHhCcc-----
Confidence 35678999999999999999999999999999 8998 8888888776654 5579999999999999995443
Q ss_pred hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 013375 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL-------SILYRLSLEYAEQRKLNAAHYYAKM 342 (444)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~ 342 (444)
...+++.+|.++..+ |++++|+..|++++ +++|+++ .+++++|.++...|++++|+..|++
T Consensus 75 ~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 142 (228)
T 4i17_A 75 LANAYIGKSAAYRDM-----------KNNQEYIATLTEGI-KAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH 142 (228)
T ss_dssp HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc-----------ccHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 257899999998765 67899999999999 9999999 6799999999999999999999999
Q ss_pred HHhhcCC--CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375 343 LLKLEGG--SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 343 al~l~P~--~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
+++++|+ + ..+|.++|.++..+|+ ..++++..+.+ .+... ..+......+.+++|+..|++++++.|+
T Consensus 143 al~~~p~~~~-~~~~~~l~~~~~~~~~-----~~~~~a~~~~~--~~~~~--~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 143 ATDVTSKKWK-TDALYSLGVLFYNNGA-----DVLRKATPLAS--SNKEK--YASEKAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HTTSSCHHHH-HHHHHHHHHHHHHHHH-----HHHHHHGGGTT--TCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHhcCCCccc-HHHHHHHHHHHHHHHH-----HHHHHHHhccc--CCHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999 8 5999999999977654 45677777777 44333 3455666778899999999999999998
Q ss_pred hhhhc
Q 013375 421 QTKTF 425 (444)
Q Consensus 421 ~~~~~ 425 (444)
+.+..
T Consensus 213 ~~~~~ 217 (228)
T 4i17_A 213 RTEIK 217 (228)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 87643
No 68
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.88 E-value=1.5e-21 Score=197.97 Aligned_cols=366 Identities=15% Similarity=0.061 Sum_probs=249.4
Q ss_pred HHHHhhhhcccchHHHHHHHHHHHHHHHhh--h-------cCCCC---CCCCccc-cHHHHHHHHHHHHHHHHHHhC---
Q 013375 14 FLKAKCLQGLGRFKEAAQSCKVILDIVESS--F-------AEGFP---ENLGADC-KLQETLNRAVELLPELWKLAD--- 77 (444)
Q Consensus 14 ~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~--~-------~~~~~---~~~~~~~-~l~~~~~~a~~~l~~~~~~~g--- 77 (444)
...|..+.+.|++++|++.|+++++..... . ..+.+ .....++ +.-+....+...+|.++...|
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 346777777888888888888876542110 0 00111 0000000 000112346667777565555
Q ss_pred --ChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCC---------------CccccccCccccCCCcHHH
Q 013375 78 --APRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCP---------------PNLRSQMGSSFVPRNNIEE 140 (444)
Q Consensus 78 --~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~---------------~~~~~~~~~~~~~~~~~~e 140 (444)
++++|+.+|+++++.. ++. ....++.++..+...... +...+.++.+|...+.+++
T Consensus 87 ~~~~~~A~~~~~~Aa~~g---~~~----A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANG---EGN----TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp HHHHHHHHHHHHHHHHTT---CSS----CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred CcCHHHHHHHHHHHHHCC---CHH----HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 7789999999998862 111 134566666654321110 0001123334444443433
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC----CCchH
Q 013375 141 AILLLMILLRKVALKRIEWDPSILDHLSFAFSIAG---DLSSLATQIEELLPGIINRKERYHILALCYYGA----GEDLV 213 (444)
Q Consensus 141 Ai~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~----g~~~~ 213 (444)
++..... +.+.+. +.++.+++.+|.++...| ++++|+..|+++....|..+..+++||.+|... +++++
T Consensus 160 ~~~~a~~-~~~~a~---~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 160 HLDDVER-ICKAAL---NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GHHHHHH-HHHHHT---TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred CHHHHHH-HHHHHH---cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 3333111 123332 445669999999999999 999999999999999999999999999999776 79999
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhch
Q 013375 214 ALNLLRTLLSGSEDPKCLPALLIASKICG--EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITD 291 (444)
Q Consensus 214 A~~~~~~al~~~~~P~~~~a~~~~~~~~~--~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~ 291 (444)
|+..|+++. |+++.+++.+|.+++ ...+++++|+.+|+++++. . ...+++.||.+|.. |...
T Consensus 236 A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g------~~~A~~~Lg~~y~~-G~g~--- 299 (452)
T 3e4b_A 236 AQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D------QPRAELLLGKLYYE-GKWV--- 299 (452)
T ss_dssp HHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHHH-CSSS---
T ss_pred HHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C------CHHHHHHHHHHHHc-CCCC---
Confidence 999999965 889999999998855 5578999999999999983 2 25789999999873 2100
Q ss_pred HHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH---
Q 013375 292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA--- 364 (444)
Q Consensus 292 ~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~--- 364 (444)
..++++|+..|++++ |+++.++++||.+|.. .+++++|+..|+++.+ ++++ .+.++||.+|..
T Consensus 300 ---~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~-~A~~~Lg~~y~~G~g 369 (452)
T 3e4b_A 300 ---PADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQN-SADFAIAQLFSQGKG 369 (452)
T ss_dssp ---CCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCT-THHHHHHHHHHSCTT
T ss_pred ---CCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChH-HHHHHHHHHHHhCCC
Confidence 127899999999885 9999999999999887 4599999999999977 4564 899999999975
Q ss_pred -ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHh
Q 013375 365 -QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ--GQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 365 -~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~l~~~ 420 (444)
.+++++|+.+|++|.+..+ ..+...++.+...+ ++..+|....++-....+.
T Consensus 370 ~~~d~~~A~~~~~~A~~~g~----~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~ 424 (452)
T 3e4b_A 370 TKPDPLNAYVFSQLAKAQDT----PEANDLATQLEAPLTPAQRAEGQRLVQQELAARGT 424 (452)
T ss_dssp BCCCHHHHHHHHHHHHTTCC----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 4689999999999998754 45566666664332 3555666666666555544
No 69
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.88 E-value=5e-21 Score=183.04 Aligned_cols=227 Identities=10% Similarity=-0.037 Sum_probs=172.5
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC--CchHHHHHHHHhhcCCCCCCChHHHHHHHHHH----hcC--CC
Q 013375 175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAG--EDLVALNLLRTLLSGSEDPKCLPALLIASKIC----GEY--PD 246 (444)
Q Consensus 175 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g--~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~----~~~--~~ 246 (444)
...++|+.+++++|.++|++..+|+..|.++...| ++++++..+.+++ ..+|++..++...+.+. ... .+
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L--~~nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIA--LDNEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH--HHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH--HHCcccHHHHHHHHHHHHHHHHhccccC
Confidence 34467888888888888888888888888888888 8888888888888 78888888887766654 221 15
Q ss_pred CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHH--HHHHHHHHHHHhhCCCCHHHHHHHH
Q 013375 247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQA--KALQALVSAARSTNMRDLSILYRLS 324 (444)
Q Consensus 247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~--eA~~~~~~al~~~~P~~~~a~~~lg 324 (444)
++++++.++.++++..|.+ ..+|++.|.++... +.++ ++++.+++++ +.||.|..+|.+.+
T Consensus 125 ~~~~EL~~~~~~l~~~pkn-----y~aW~~R~~vl~~l-----------~~~~~~~EL~~~~~~i-~~d~~N~sAW~~R~ 187 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKN-----HHVWSYRKWLVDTF-----------DLHNDAKELSFVDKVI-DTDLKNNSAWSHRF 187 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHT-----------TCTTCHHHHHHHHHHH-HHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHh-----------cccChHHHHHHHHHHH-HhCCCCHHHHHHHH
Confidence 6778888888888865543 46788888777554 3345 7888888888 88888888888888
Q ss_pred HHHHHcCC------HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHH-HHHHHHHHHhhc---CCCCcHHHHHHH
Q 013375 325 LEYAEQRK------LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED-AETILNAALDQT---GKWEQGELLRTK 394 (444)
Q Consensus 325 ~~~~~~g~------~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~e-A~~~~~~al~~~---P~~~~~~~~~~l 394 (444)
.++...++ ++++++++++++.++|++ ..+|+.++.++...|+..+ ....+.+++++. | .+..++..+
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n-~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~al~~l 264 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQN-PSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQV--TSSFALETL 264 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEE--SCHHHHHHH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCC--CCHHHHHHH
Confidence 88887776 888888888888888888 4888888888888887554 445677777665 6 677888888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHH-HHHhhhh
Q 013375 395 AKVQLVQGQLKGAVETYTHLLA-ALQVQTK 423 (444)
Q Consensus 395 a~~~~~~g~~~~A~~~~~~al~-l~~~~~~ 423 (444)
+.++.+.|+.++|+++|+.+.+ +.|.+.+
T Consensus 265 a~~~~~~~~~~~A~~~~~~l~~~~Dpir~~ 294 (306)
T 3dra_A 265 AKIYTQQKKYNESRTVYDLLKSKYNPIRSN 294 (306)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHccCCHHHHHHHHHHHHhccChHHHH
Confidence 8888888888888888888876 5665543
No 70
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.87 E-value=1.1e-21 Score=177.64 Aligned_cols=179 Identities=17% Similarity=0.062 Sum_probs=126.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHH----------------HHHHHHHCCCchHHHHHHHHhhc
Q 013375 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHI----------------LALCYYGAGEDLVALNLLRTLLS 223 (444)
Q Consensus 160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~l~~~g~~~~A~~~~~~al~ 223 (444)
+++.+...|..+...|++++|+..|+++++.+|+++++|+. +|.++...|++++|+..|++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al- 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL- 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
Confidence 45566778888888888888888888888888888888888 7777777777777777777777
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHH
Q 013375 224 GSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ 303 (444)
Q Consensus 224 ~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~ 303 (444)
.++|+++.+++.+ |.++.. .|++++|+.
T Consensus 82 -~~~p~~~~~~~~l----------------------------------------g~~~~~-----------~g~~~~A~~ 109 (208)
T 3urz_A 82 -QKAPNNVDCLEAC----------------------------------------AEMQVC-----------RGQEKDALR 109 (208)
T ss_dssp -HHCTTCHHHHHHH----------------------------------------HHHHHH-----------HTCHHHHHH
T ss_pred -HHCCCCHHHHHHH----------------------------------------HHHHHH-----------cCCHHHHHH
Confidence 6677666555444 444432 245778888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013375 304 ALVSAARSTNMRDLSILYRLSLEYAEQRK--LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (444)
Q Consensus 304 ~~~~al~~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~ 381 (444)
.|++++ +++|+++.+++++|.+|...|+ ...+...|++++..+|. ..+|+.+|.++...|+|++|+.+|++|+++
T Consensus 110 ~~~~al-~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 110 MYEKIL-QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM--QYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHH-HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH--HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch--hHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 888888 8888888888888888776653 45567777777654443 256777788888888888888888888888
Q ss_pred cCCCCcHHHHHHHHHH
Q 013375 382 TGKWEQGELLRTKAKV 397 (444)
Q Consensus 382 ~P~~~~~~~~~~la~~ 397 (444)
+| +. .+...+..+
T Consensus 187 ~P--~~-~~~~~l~~i 199 (208)
T 3urz_A 187 FP--ST-EAQKTLDKI 199 (208)
T ss_dssp SC--CH-HHHHHHHHH
T ss_pred CC--CH-HHHHHHHHH
Confidence 88 43 344444443
No 71
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.86 E-value=1e-20 Score=186.83 Aligned_cols=242 Identities=14% Similarity=0.056 Sum_probs=202.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC------
Q 013375 163 ILDHLSFAFSIAGDLSSLATQIEELLPGI------INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC------ 230 (444)
Q Consensus 163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~------ 230 (444)
.++.+|..+...|++++|+..|++++++. |..+.+++++|.++...|++++|+..+++++ .+.++.
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al--~~~~~~~~~~~~ 180 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL--DIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH--HHHHhCCCchhh
Confidence 56788999999999999999999999873 3357799999999999999999999999999 554432
Q ss_pred -hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHH
Q 013375 231 -LPALLIASKICGEYPDLAEEGATFASRALECLGD-GCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (444)
Q Consensus 231 -~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~a 308 (444)
..++..+|.++ ...|++++|+.+++++++..+. .+......++.++|.+|..+ |++++|+..|+++
T Consensus 181 ~~~~~~~lg~~y-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-----------~~~~~A~~~~~~a 248 (378)
T 3q15_A 181 TIQSLFVIAGNY-DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS-----------GDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHH
Confidence 33555666665 5579999999999999997532 22334567899999999765 6799999999999
Q ss_pred HHh-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-----CCChHHHHHHHHHHHHccC---HHHHHHHH
Q 013375 309 ARS-----TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG-----GSNLKGWLLMARILSAQKR---YEDAETIL 375 (444)
Q Consensus 309 l~~-----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-----~~~~~~~~~la~~l~~~g~---~~eA~~~~ 375 (444)
+ . .+|..+.+++++|.++..+|++++|+.++++++++.+ .. ...+..++.++...|+ +.+|+.++
T Consensus 249 l-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 249 A-KVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY-KELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp H-HHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH-HHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred H-HHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 9 9 8899999999999999999999999999999999854 33 3456778888888888 88888888
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 376 NAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 376 ~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
++. ...| +...++..+|.++...|++++|+..|++++++.++-.+
T Consensus 327 ~~~-~~~~--~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 327 EKK-NLHA--YIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHT-TCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CChh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 873 3344 56778889999999999999999999999999886655
No 72
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=8.8e-21 Score=177.19 Aligned_cols=205 Identities=13% Similarity=0.025 Sum_probs=170.7
Q ss_pred cccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCC---CHHHHH
Q 013375 126 SQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWD---PSILDHLSFAFSIAGDLSSLATQIEELLPGIIN---RKERYH 199 (444)
Q Consensus 126 ~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~---~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~---~~~~~~ 199 (444)
+..+..+...|++++|+..+ +.++...|++ +.+++.+|.++...|++++|+..|+++++..|+ .+.+++
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~-----~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYF-----KAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHH-----HHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH-----HHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 45677889999999999986 5678889998 899999999999999999999999999999775 478999
Q ss_pred HHHHHHHH--------CCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013375 200 ILALCYYG--------AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (444)
Q Consensus 200 ~la~~l~~--------~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (444)
.+|.++.. .|++++|+..|++++ ..+|+++.+......+ ..... ...
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l--~~~p~~~~~~~a~~~~---------------~~~~~--------~~~ 148 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFI--DRYPNHELVDDATQKI---------------RELRA--------KLA 148 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHH--HHCTTCTTHHHHHHHH---------------HHHHH--------HHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHH--HHCcCchhHHHHHHHH---------------HHHHH--------HHH
Confidence 99999999 999999999999999 8999988765432221 11111 123
Q ss_pred HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHc----------CCHHHHHH
Q 013375 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR---DLSILYRLSLEYAEQ----------RKLNAAHY 338 (444)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~---~~~a~~~lg~~~~~~----------g~~~~A~~ 338 (444)
..++.+|.+|... |++++|+..|++++ +..|+ .+.+++.+|.++..+ |++++|+.
T Consensus 149 ~~~~~la~~~~~~-----------g~~~~A~~~~~~~l-~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~ 216 (261)
T 3qky_A 149 RKQYEAARLYERR-----------ELYEAAAVTYEAVF-DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVE 216 (261)
T ss_dssp HHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHH
Confidence 5678899988764 67999999999999 99999 567999999999977 99999999
Q ss_pred HHHHHHhhcCCCC--hHHHHHHHHHHHHccCHHHHH
Q 013375 339 YAKMLLKLEGGSN--LKGWLLMARILSAQKRYEDAE 372 (444)
Q Consensus 339 ~~~~al~l~P~~~--~~~~~~la~~l~~~g~~~eA~ 372 (444)
.|+++++..|+++ ..+...++.++...++++++.
T Consensus 217 ~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 217 LYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999985 145667777777777776543
No 73
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.86 E-value=3.2e-20 Score=177.44 Aligned_cols=238 Identities=13% Similarity=0.065 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHhhcCCCCCCHHHHHHHHHHH----HHC---
Q 013375 138 IEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAG--DLSSLATQIEELLPGIINRKERYHILALCY----YGA--- 208 (444)
Q Consensus 138 ~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~l----~~~--- 208 (444)
.++|+.+ .+.++..+|++..+|+..+.++...| ++++++..+++++..+|++..+|+..+.++ ...
T Consensus 49 s~~aL~~-----t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 49 SERALHI-----TELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp SHHHHHH-----HHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHH-----HHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc
Confidence 3577766 36778999999999999999999999 999999999999999999999999999999 777
Q ss_pred CCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhh
Q 013375 209 GEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE--EGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (444)
Q Consensus 209 g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~--eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (444)
+++++++..+.+++ ..+|++..++...+.+. ...+.++ +++.+++++++..+.+ ..||.+.|.++...+.
T Consensus 124 ~~~~~EL~~~~~~l--~~~pkny~aW~~R~~vl-~~l~~~~~~~EL~~~~~~i~~d~~N-----~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 124 FDPYREFDILEAML--SSDPKNHHVWSYRKWLV-DTFDLHNDAKELSFVDKVIDTDLKN-----NSAWSHRFFLLFSKKH 195 (306)
T ss_dssp CCTHHHHHHHHHHH--HHCTTCHHHHHHHHHHH-HHTTCTTCHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHSSGG
T ss_pred CCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHH-HHhcccChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhccc
Confidence 89999999999999 89999999999887665 4467777 9999999999975544 5799999988876542
Q ss_pred hhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhc---CCCChHHHHHHHHHH
Q 013375 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNA-AHYYAKMLLKLE---GGSNLKGWLLMARIL 362 (444)
Q Consensus 287 ~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~-A~~~~~~al~l~---P~~~~~~~~~la~~l 362 (444)
.. ....++++++.+++++ .++|+|..+|++++.++...|+..+ ....+.+++.++ |.+ ..++..++.++
T Consensus 196 ~~-----~~~~~~eEl~~~~~aI-~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~al~~la~~~ 268 (306)
T 3dra_A 196 LA-----TDNTIDEELNYVKDKI-VKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS-SFALETLAKIY 268 (306)
T ss_dssp GC-----CHHHHHHHHHHHHHHH-HHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC-HHHHHHHHHHH
T ss_pred cc-----hhhhHHHHHHHHHHHH-HhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHH
Confidence 11 0123899999999999 9999999999999999999998555 667888888887 888 49999999999
Q ss_pred HHccCHHHHHHHHHHHHh-hcCCCCcHHHHHHHHHH
Q 013375 363 SAQKRYEDAETILNAALD-QTGKWEQGELLRTKAKV 397 (444)
Q Consensus 363 ~~~g~~~eA~~~~~~al~-~~P~~~~~~~~~~la~~ 397 (444)
.+.|++++|+.+|+++.+ .+| .....|..++..
T Consensus 269 ~~~~~~~~A~~~~~~l~~~~Dp--ir~~yW~~~~~~ 302 (306)
T 3dra_A 269 TQQKKYNESRTVYDLLKSKYNP--IRSNFWDYQISK 302 (306)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCG--GGHHHHHHHHHT
T ss_pred HccCCHHHHHHHHHHHHhccCh--HHHHHHHHHHhh
Confidence 999999999999999997 799 899999888764
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.85 E-value=2e-19 Score=176.53 Aligned_cols=284 Identities=13% Similarity=-0.021 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHH
Q 013375 63 NRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAI 142 (444)
Q Consensus 63 ~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi 142 (444)
..+....|.++...|++++|+..+++++...+..++..
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------------------------ 51 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS------------------------------------------ 51 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHH------------------------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhH------------------------------------------
Confidence 45666778888999999999999999988721111100
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH------HHHHHHHHHHHHCCCchHHHH
Q 013375 143 LLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK------ERYHILALCYYGAGEDLVALN 216 (444)
Q Consensus 143 ~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~l~~~g~~~~A~~ 216 (444)
...++..+|.++...|++++|...+++++.+.|... .+++++|.++...|++++|+.
T Consensus 52 -----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 114 (373)
T 1hz4_A 52 -----------------RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWE 114 (373)
T ss_dssp -----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 011345677777778888888888888877654332 336778888888888888888
Q ss_pred HHHHhhcCCCC--------CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhh
Q 013375 217 LLRTLLSGSED--------PKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVA 288 (444)
Q Consensus 217 ~~~~al~~~~~--------P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~ 288 (444)
.|++++ .+. |....++..++.+++ ..|++++|+.+++++++..+...+.....++..+|.++...
T Consensus 115 ~~~~al--~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~---- 187 (373)
T 1hz4_A 115 TQEKAF--QLINEQHLEQLPMHEFLVRIRAQLLW-AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR---- 187 (373)
T ss_dssp HHHHHH--HHHHHTTCTTSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH----
T ss_pred HHHHHH--HHHHHhccccCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc----
Confidence 888887 443 223344555565554 35788888888888888655432222346777888887654
Q ss_pred hchHHHHhhHHHHHHHHHHHHHhhCC--CCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHhhcCCCC---hHHHHHH
Q 013375 289 ITDFDRATRQAKALQALVSAARSTNM--RDLSILY-----RLSLEYAEQRKLNAAHYYAKMLLKLEGGSN---LKGWLLM 358 (444)
Q Consensus 289 ~~~~~~~~~~~eA~~~~~~al~~~~P--~~~~a~~-----~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~~l 358 (444)
|++++|+..+++++ .+.+ +++..+. .++.++...|++++|...+++++...|..+ ...+..+
T Consensus 188 -------g~~~~A~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 188 -------GDLDNARSQLNRLE-NLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp -------TCHHHHHHHHHHHH-HHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred -------CCHHHHHHHHHHHH-HHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 67899999999998 7632 3322222 244557899999999999999998877531 1367889
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375 359 ARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 359 a~~l~~~g~~~eA~~~~~~al~~~P~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
|.++..+|++++|+..+++++...+.. +...++..+|.++..+|++++|...|++++++.+.
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999775410 12357888999999999999999999999998874
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.3e-21 Score=184.03 Aligned_cols=265 Identities=14% Similarity=0.068 Sum_probs=164.0
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q 013375 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR 88 (444)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~ 88 (444)
..++++.+|.++...|++++|+..++++++..++...... +....++..+|.+|...|++++|+..|++
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 94 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDH-----------PDVATMLNILALVYRDQNKYKDAANLLND 94 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSS-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC-----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4678999999999999999999999999987655321111 12456888999999999999999999999
Q ss_pred HhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013375 89 ALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLS 168 (444)
Q Consensus 89 aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg 168 (444)
++.. .... .-...|....++..+|
T Consensus 95 al~~----~~~~----------------------------------------------------~~~~~~~~~~~~~~l~ 118 (311)
T 3nf1_A 95 ALAI----REKT----------------------------------------------------LGKDHPAVAATLNNLA 118 (311)
T ss_dssp HHHH----HHHH----------------------------------------------------HCTTCHHHHHHHHHHH
T ss_pred HHHH----HHHH----------------------------------------------------hCCCChHHHHHHHHHH
Confidence 9886 1000 0001122344566777
Q ss_pred HHHHhcCCHHHHHHHHHhhcCCC--------CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCC--------CCCChH
Q 013375 169 FAFSIAGDLSSLATQIEELLPGI--------INRKERYHILALCYYGAGEDLVALNLLRTLLSGSE--------DPKCLP 232 (444)
Q Consensus 169 ~~l~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~--------~P~~~~ 232 (444)
.++...|++++|+..|++++++. |....+++++|.++...|++++|+..|++++ .. +|....
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~ 196 (311)
T 3nf1_A 119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL--EIYQTKLGPDDPNVAK 196 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHHHHTSCTTCHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHhCCCCHHHHH
Confidence 77777777777777777777652 5556677777777777777777777777777 44 455555
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC----cchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHH
Q 013375 233 ALLIASKICGEYPDLAEEGATFASRALECLGDG----CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (444)
Q Consensus 233 a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~----~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~a 308 (444)
++..++.++. ..|++++|+.+++++++..+.. ........+...+......+. ....+.+.+|+..++++
T Consensus 197 ~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~ 270 (311)
T 3nf1_A 197 TKNNLASCYL-KQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK-----QKDGTSFGEYGGWYKAC 270 (311)
T ss_dssp HHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------------CCSCCCC------
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc-----hhhHHHHHHHHHHHhhc
Confidence 5665655543 3567777777777777642110 000011122222222211110 01223455667777777
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375 309 ARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 309 l~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 349 (444)
+ ..+|.++.+++.+|.++..+|++++|+.+|++++++.|+
T Consensus 271 ~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 271 K-VDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred C-CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 7 777777777777777777777777777777777777765
No 76
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.85 E-value=1.3e-20 Score=165.59 Aligned_cols=170 Identities=16% Similarity=0.071 Sum_probs=142.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHH
Q 013375 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLI 236 (444)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~ 236 (444)
+|...+.+..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++ ..+| ++..+..
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~--~~~p-~~~~~~~ 78 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP--LEYQ-DNSYKSL 78 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC--GGGC-CHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh--hccC-ChHHHHH
Confidence 355566788999999999999999999999999999999999999999999999999999999999 8999 7654332
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC
Q 013375 237 ASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~ 316 (444)
.+.+.+. . .+...+|+..|++++ +++|++
T Consensus 79 ~~~~~~~----------------~----------------------------------~~~~~~a~~~~~~al-~~~P~~ 107 (176)
T 2r5s_A 79 IAKLELH----------------Q----------------------------------QAAESPELKRLEQEL-AANPDN 107 (176)
T ss_dssp HHHHHHH----------------H----------------------------------HHTSCHHHHHHHHHH-HHSTTC
T ss_pred HHHHHHH----------------h----------------------------------hcccchHHHHHHHHH-HhCCCC
Confidence 2211100 0 011235789999999 999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013375 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-LKGWLLMARILSAQKRYEDAETILNAALD 380 (444)
Q Consensus 317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-~~~~~~la~~l~~~g~~~eA~~~~~~al~ 380 (444)
+.+++++|.++...|++++|+..|+++++++|++. ..+|.++|.++..+|++++|+..|++++.
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999852 26999999999999999999999999985
No 77
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.85 E-value=1.3e-20 Score=170.41 Aligned_cols=187 Identities=10% Similarity=0.038 Sum_probs=155.8
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHH
Q 013375 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTA 273 (444)
Q Consensus 194 ~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a 273 (444)
+++.++..|..+...|++++|+..|++++ ..+|+++.+++..+. . .. .......
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~~~~---~--~~-------------------~~~~~~~ 56 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTI--ALNIDRTEMYYWTNV---D--KN-------------------SEISSKL 56 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCHHHHHHHHHHHS---C--TT-------------------SHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCChHHHHHhhh---c--ch-------------------hhhhHHH
Confidence 57788999999999999999999999999 899999988765321 1 00 0112334
Q ss_pred HHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChH
Q 013375 274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK 353 (444)
Q Consensus 274 ~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 353 (444)
.+.+|.++... |++++|+..|++++ +++|+++.+++++|.++...|++++|+..|+++++++|++ ..
T Consensus 57 ~~~lg~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~ 123 (208)
T 3urz_A 57 ATELALAYKKN-----------RNYDKAYLFYKELL-QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-LA 123 (208)
T ss_dssp HHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HH
T ss_pred HHHHHHHHHHC-----------CCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HH
Confidence 56688888664 67999999999999 9999999999999999999999999999999999999999 59
Q ss_pred HHHHHHHHHHHccC--HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375 354 GWLLMARILSAQKR--YEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 354 ~~~~la~~l~~~g~--~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
+|+++|.++..+|+ .+.+...+++++...| ...+++++|.++...|++++|+..|++++++.|+..
T Consensus 124 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK---MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---CCCH---HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 99999999987765 4567788888875444 345788999999999999999999999999999643
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.84 E-value=2.4e-19 Score=156.31 Aligned_cols=120 Identities=13% Similarity=0.115 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Q 013375 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (444)
Q Consensus 298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~ 377 (444)
+++|+..+++++ +.+|+++.+++.+|.++...|++++|+..+++++.++|++ ..++..+|.++...|++++|+.++++
T Consensus 58 ~~~A~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 58 VDRGTELLERSL-ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-FNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp HHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-HHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 445555555555 5555555555555555555555555555555555555555 35555555555555555555555555
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375 378 ALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 378 al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~ 421 (444)
+++..| ++..+++.+|.++...|++++|+..|++++++.|+.
T Consensus 136 ~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 136 ALGLRP--NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHhcCc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 555555 555555555555555555555555555555555543
No 79
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.84 E-value=2.1e-21 Score=166.45 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=75.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCC
Q 013375 167 LSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPD 246 (444)
Q Consensus 167 lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~ 246 (444)
||.++...|++++|++.|+++++.+|+++.+++.+|.+|...|++++|+..|++++ .++|+++.++..+|.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al--~~~p~~~~a~~~lg~~------ 74 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI--NVQERDPKAHRFLGLL------ 74 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHH------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHH------
Confidence 45555555555555555555555555555555555555555555555555555555 4555554444333222
Q ss_pred CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013375 247 LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLE 326 (444)
Q Consensus 247 ~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~ 326 (444)
+.. .|++++|+..|++++ +++|+++.+++++|.+
T Consensus 75 ----------------------------------~~~-----------~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~ 108 (150)
T 4ga2_A 75 ----------------------------------YEL-----------EENTDKAVECYRRSV-ELNPTQKDLVLKIAEL 108 (150)
T ss_dssp ----------------------------------HHH-----------TTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHH
T ss_pred ----------------------------------HHH-----------cCchHHHHHHHHHHH-HhCCCCHHHHHHHHHH
Confidence 111 123455555555555 5555555555555555
Q ss_pred HHHcCCHHHHHHH-HHHHHhhcCCCChHHHHHHHHHHHHcc
Q 013375 327 YAEQRKLNAAHYY-AKMLLKLEGGSNLKGWLLMARILSAQK 366 (444)
Q Consensus 327 ~~~~g~~~~A~~~-~~~al~l~P~~~~~~~~~la~~l~~~g 366 (444)
+...|++++|... +++|++++|+++ .+|..++.++..+|
T Consensus 109 ~~~~~~~~~aa~~~~~~al~l~P~~~-~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 109 LCKNDVTDGRAKYWVERAAKLFPGSP-AVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHCSSSSHHHHHHHHHHHHSTTCH-HHHHHHHHHHHTCC
T ss_pred HHHcCChHHHHHHHHHHHHHhCcCCH-HHHHHHHHHHHHhC
Confidence 5555555544433 355555555553 55555555555544
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.84 E-value=1.8e-19 Score=157.22 Aligned_cols=168 Identities=17% Similarity=0.163 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 013375 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (444)
Q Consensus 161 ~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (444)
..++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++ ..+|+++.++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~--- 82 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSL--ADAPDNVKVATVL--- 82 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHH---
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCCHHHHHHH---
Confidence 45677788888888888888888888888888888888888888888888888888888888 6777766554433
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013375 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL 320 (444)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~ 320 (444)
|.++.. .|++++|+..|++++ ..+|+++.++
T Consensus 83 -------------------------------------a~~~~~-----------~~~~~~A~~~~~~~~-~~~~~~~~~~ 113 (186)
T 3as5_A 83 -------------------------------------GLTYVQ-----------VQKYDLAVPLLIKVA-EANPINFNVR 113 (186)
T ss_dssp -------------------------------------HHHHHH-----------HTCHHHHHHHHHHHH-HHCTTCHHHH
T ss_pred -------------------------------------HHHHHH-----------hcCHHHHHHHHHHHH-hcCcHhHHHH
Confidence 333322 245788888888888 8888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
+.+|.++...|++++|+..++++++.+|++ ..++..+|.++..+|++++|+.+++++++..|
T Consensus 114 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 114 FRLGVALDNLGRFDEAIDSFKIALGLRPNE-GKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 888888888888999999999888888888 48888888888888889999988888888888
No 81
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.84 E-value=1.3e-20 Score=179.60 Aligned_cols=213 Identities=7% Similarity=-0.038 Sum_probs=167.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCCCC------CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC------hHHH
Q 013375 167 LSFAFSIAGDLSSLATQIEELLPGII------NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC------LPAL 234 (444)
Q Consensus 167 lg~~l~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~------~~a~ 234 (444)
.|.++...|++++|+.+|++++.+.+ ..+.+|.++|.+|..+|++++|+..|++++ .+.|+. ..++
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al--~l~~~~g~~~~~a~~~ 120 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI--QIFTHRGQFRRGANFK 120 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHHcCCHHHHHHHH
Confidence 36788899999999999999998743 236799999999999999999999999999 777753 3466
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc-hhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC
Q 013375 235 LIASKICGEYPDLAEEGATFASRALECLGDGCD-QMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (444)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~-~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~ 313 (444)
..+|.++....|++++|+.+|++++++.+.... .....++..+|.++..+ |++++|+..|++++ ++.
T Consensus 121 ~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al-~~~ 188 (292)
T 1qqe_A 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD-----------GQYIEASDIYSKLI-KSS 188 (292)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHH-HHH
Confidence 667776544349999999999999997654321 22246788899988765 67999999999999 999
Q ss_pred CCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHH-----HHHHHHHHH--HccCHHHHHHHHHHHH
Q 013375 314 MRDLS-------ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG-----WLLMARILS--AQKRYEDAETILNAAL 379 (444)
Q Consensus 314 P~~~~-------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~-----~~~la~~l~--~~g~~~eA~~~~~~al 379 (444)
|+++. +++++|.++..+|++++|+..|+++++++|++. .. +..++..+. ..+++++|+..|++++
T Consensus 189 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 189 MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA-DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 98764 679999999999999999999999999999974 43 344555554 4578999999999999
Q ss_pred hhcCCCCcHHHHHHHHH
Q 013375 380 DQTGKWEQGELLRTKAK 396 (444)
Q Consensus 380 ~~~P~~~~~~~~~~la~ 396 (444)
.++| .+..++...-.
T Consensus 268 ~l~~--~~~~~~~~~k~ 282 (292)
T 1qqe_A 268 RLDK--WKITILNKIKE 282 (292)
T ss_dssp CCCH--HHHHHHHHHHH
T ss_pred ccHH--HHHHHHHHHHH
Confidence 9999 66655554433
No 82
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.84 E-value=5e-21 Score=164.13 Aligned_cols=141 Identities=11% Similarity=0.024 Sum_probs=116.8
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013375 243 EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYR 322 (444)
Q Consensus 243 ~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~ 322 (444)
...|++++|+..+++++...|. ...+++.+|.+|... |++++|++.|++++ +++|+++.+|++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~-----~~~~~~~la~~y~~~-----------~~~~~A~~~~~~al-~~~p~~~~a~~~ 70 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQ-----KSIKGFYFAKLYYEA-----------KEYDLAKKYICTYI-NVQERDPKAHRF 70 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHH-----HHTTHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHH
T ss_pred HHcChHHHHHHHHHHhcccCcc-----cHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHH
Confidence 3445555555555555542111 234566677777554 57899999999999 999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHH-HHHHHhhcCCCCcHHHHHHHHHHHHHh
Q 013375 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETI-LNAALDQTGKWEQGELLRTKAKVQLVQ 401 (444)
Q Consensus 323 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~-~~~al~~~P~~~~~~~~~~la~~~~~~ 401 (444)
+|.++...|++++|+..|+++++++|++ ..+|.++|.++..+|++++|... +++|++++| +++.++..++.++..+
T Consensus 71 lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P--~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 71 LGLLYELEENTDKAVECYRRSVELNPTQ-KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP--GSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST--TCHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999 59999999999999999887765 599999999 8999999999999888
Q ss_pred CC
Q 013375 402 GQ 403 (444)
Q Consensus 402 g~ 403 (444)
|+
T Consensus 148 G~ 149 (150)
T 4ga2_A 148 GE 149 (150)
T ss_dssp CC
T ss_pred Cc
Confidence 85
No 83
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.84 E-value=1.7e-20 Score=199.63 Aligned_cols=175 Identities=14% Similarity=0.028 Sum_probs=154.5
Q ss_pred cCCCcHHHHHHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 013375 133 VPRNNIEEAILLLMILLRKVAL--------KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALC 204 (444)
Q Consensus 133 ~~~~~~~eAi~~l~~~~~~~~l--------~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 204 (444)
...+++++|+..+ +.++ ..+|++.+++..+|.++...|++++|++.|+++++.+|+++.+|+++|.+
T Consensus 402 ~~~~~~~~A~~~~-----~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSL-----RAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHH-----HHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHH-----HHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 4578899999876 4456 77899999999999999999999999999999999999999999999999
Q ss_pred HHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhh
Q 013375 205 YYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQ 284 (444)
Q Consensus 205 l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 284 (444)
+..+|++++|+..|++++ +++|+++.+++.+|.++. ..|++++ +.+|+++++..|.+ ..+++++|.++...
T Consensus 477 ~~~~g~~~~A~~~~~~al--~l~P~~~~~~~~lg~~~~-~~g~~~~-~~~~~~al~~~P~~-----~~a~~~lg~~~~~~ 547 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVL--DTFPGELAPKLALAATAE-LAGNTDE-HKFYQTVWSTNDGV-----ISAAFGLARARSAE 547 (681)
T ss_dssp HHHHTCHHHHHHHHHHHH--HHSTTCSHHHHHHHHHHH-HHTCCCT-TCHHHHHHHHCTTC-----HHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHH-HcCChHH-HHHHHHHHHhCCch-----HHHHHHHHHHHHHc
Confidence 999999999999999999 899999999998887764 4688999 99999999965544 57899999999765
Q ss_pred hhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 013375 285 SKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL 333 (444)
Q Consensus 285 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~ 333 (444)
|++++|++.|++++ +++|+++.+++++|.++...++.
T Consensus 548 -----------g~~~~A~~~~~~al-~l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 548 -----------GDRVGAVRTLDEVP-PTSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp -----------TCHHHHHHHHHTSC-TTSTTHHHHHHHHHHHTC-----
T ss_pred -----------CCHHHHHHHHHhhc-ccCcccHHHHHHHHHHHHccCCC
Confidence 67999999999999 99999999999999999887763
No 84
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.84 E-value=1e-19 Score=179.72 Aligned_cols=234 Identities=10% Similarity=-0.033 Sum_probs=187.2
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCC-------CCHHHHHH
Q 013375 131 SFVPRNNIEEAILLLMILLRKVALKRIEW---DPSILDHLSFAFSIAGDLSSLATQIEELLPGII-------NRKERYHI 200 (444)
Q Consensus 131 ~~~~~~~~~eAi~~l~~~~~~~~l~~~p~---~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~ 200 (444)
.+...|++++|+..+..++. .....|+ ...++..+|.++...|++++|+..|++++++.+ ....++++
T Consensus 112 ~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAES--KLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHT--TGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH--HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 45567899999998743321 1122343 457999999999999999999999999998743 34568999
Q ss_pred HHHHHHHCCCchHHHHHHHHhhcCCCCCCCh------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcc-hhhhHH
Q 013375 201 LALCYYGAGEDLVALNLLRTLLSGSEDPKCL------PALLIASKICGEYPDLAEEGATFASRALECLGDGCD-QMESTA 273 (444)
Q Consensus 201 la~~l~~~g~~~~A~~~~~~al~~~~~P~~~------~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~-~~~~~a 273 (444)
+|.++..+|++++|+..|++++ .+.|+.. .++..+|.++ ...|++++|+.++++++++...... +....+
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~lg~~y-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAY--SMAEAEKQPQLMGRTLYNIGLCK-NSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH--HHHHHcCChHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 9999999999999999999999 6655432 3666676665 4579999999999999996432222 334788
Q ss_pred HHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHh
Q 013375 274 NCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST-----NMRDLSILYRLSLEYAEQRK---LNAAHYYAKMLLK 345 (444)
Q Consensus 274 ~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~-----~P~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~ 345 (444)
++.+|.++... |++++|+..|++++ ++ +|.....+..+|.++...|+ +++|+..+++. .
T Consensus 267 ~~~l~~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~ 333 (383)
T 3ulq_A 267 YFLITQIHYKL-----------GKIDKAHEYHSKGM-AYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-M 333 (383)
T ss_dssp HHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHC-----------CCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-c
Confidence 99999999765 67999999999999 88 45555556789999999999 89999999988 4
Q ss_pred hcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375 346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 346 l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
..|.. ..++..+|.++..+|++++|+.+++++++...
T Consensus 334 ~~~~~-~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 334 LYADL-EDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp CHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45555 47899999999999999999999999998765
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=2.5e-20 Score=177.65 Aligned_cols=218 Identities=14% Similarity=0.004 Sum_probs=172.9
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC------ChHHHHHHHHHHhcCCCCHH
Q 013375 176 DLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK------CLPALLIASKICGEYPDLAE 249 (444)
Q Consensus 176 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~------~~~a~~~~~~~~~~~~~~~~ 249 (444)
++++|+.+|+++ |.+|...|++++|+..|++++ .+.+. ...++..+|.+ +...|+++
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~a~~~~~lg~~-~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAA--DYQKKAGNEDEAGNTYVEAYKC-FKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHH-HHHTTCHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHH-HHHCCCHH
Confidence 599999999988 778999999999999999999 66432 24566666665 45679999
Q ss_pred HHHHHHHHHHHHcCCCc-chhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC------HHHHHH
Q 013375 250 EGATFASRALECLGDGC-DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD------LSILYR 322 (444)
Q Consensus 250 eA~~~~~~al~~~~~~~-~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~------~~a~~~ 322 (444)
+|+.+|++++++.+... ......++..+|.+|..+ .|++++|+..|++++ ++.|++ ..++.+
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~----------lg~~~~A~~~~~~Al-~~~~~~~~~~~~~~~~~~ 163 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND----------LHDYAKAIDCYELAG-EWYAQDQSVALSNKCFIK 163 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------TCCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh----------hcCHHHHHHHHHHHH-HHHHhCCChHHHHHHHHH
Confidence 99999999999764321 122356788899988652 157999999999999 998865 578999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCCh------HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH-----H
Q 013375 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNL------KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL-----L 391 (444)
Q Consensus 323 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~------~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-----~ 391 (444)
+|.++..+|++++|+..|+++++++|+++. .+|.++|.++..+|++++|+.+|+++++++| +.... +
T Consensus 164 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~~~l 241 (292)
T 1qqe_A 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP--NFADSRESNFL 241 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCCCcHHHHHH
Confidence 999999999999999999999999998741 1688999999999999999999999999999 54432 3
Q ss_pred HHHHHHHH--HhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 392 RTKAKVQL--VQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 392 ~~la~~~~--~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
..++..+. ..+++++|+..|++++.+.|....
T Consensus 242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 242 KSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 34455443 467899999999999888886654
No 86
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.83 E-value=1.4e-18 Score=170.45 Aligned_cols=293 Identities=15% Similarity=0.039 Sum_probs=216.1
Q ss_pred hHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHH
Q 013375 4 HAISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETI 83 (444)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~ 83 (444)
....+..+.+..+|..+...|++++|...++++++.. |... ......++..+|.++...|++++|+
T Consensus 8 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~ 73 (373)
T 1hz4_A 8 REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL--------PPGW------FYSRIVATSVLGEVLHCKGELTRSL 73 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------CTTC------HHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------CCCc------hhHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3456677889999999999999999999999998752 2110 0113356778899999999999999
Q ss_pred HHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 013375 84 MSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSI 163 (444)
Q Consensus 84 ~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~ 163 (444)
..|++++.. .+.. +... ....+
T Consensus 74 ~~~~~al~~----~~~~-----------------------------------~~~~-------------------~~~~~ 95 (373)
T 1hz4_A 74 ALMQQTEQM----ARQH-----------------------------------DVWH-------------------YALWS 95 (373)
T ss_dssp HHHHHHHHH----HHHT-----------------------------------TCHH-------------------HHHHH
T ss_pred HHHHHHHHH----HHhc-----------------------------------CcHH-------------------HHHHH
Confidence 999999987 2210 0000 00124
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCCC--------CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC-----
Q 013375 164 LDHLSFAFSIAGDLSSLATQIEELLPGI--------INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC----- 230 (444)
Q Consensus 164 ~~~lg~~l~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~----- 230 (444)
+..+|.++...|++++|+..|++++++. |....++.++|.++...|++++|+..+++++ ...|+.
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~ 173 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI--EVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHTTTSCGGGG
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhhccCcHHH
Confidence 5678888888888888888888888764 4456677888999999999999999999988 565542
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH--HhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHH
Q 013375 231 LPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC--LLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (444)
Q Consensus 231 ~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~--~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~a 308 (444)
..++..++.++. ..|++++|+.+++++++..+.........+.. .++.++. ..|++++|...++++
T Consensus 174 ~~~~~~la~~~~-~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 174 LQCLAMLIQCSL-ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ-----------MTGDKAAAANWLRHT 241 (373)
T ss_dssp HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-----------HTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH-----------HCCCHHHHHHHHHhC
Confidence 234555666554 46888999999999888643321111111111 1222232 247899999999999
Q ss_pred HHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC-----ChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013375 309 ARSTNMRD----LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS-----NLKGWLLMARILSAQKRYEDAETILNAAL 379 (444)
Q Consensus 309 l~~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-----~~~~~~~la~~l~~~g~~~eA~~~~~~al 379 (444)
+ ...|.+ ..++..+|.++...|++++|+..+++++...+.. ...++..+|.++..+|++++|...+++++
T Consensus 242 ~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 242 A-KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp C-CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred C-CCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9 888764 3467899999999999999999999999886542 12478889999999999999999999999
Q ss_pred hhcC
Q 013375 380 DQTG 383 (444)
Q Consensus 380 ~~~P 383 (444)
...+
T Consensus 321 ~~~~ 324 (373)
T 1hz4_A 321 KLAN 324 (373)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8876
No 87
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.82 E-value=2.7e-19 Score=163.72 Aligned_cols=206 Identities=10% Similarity=-0.034 Sum_probs=142.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH---H
Q 013375 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINR---KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP---A 233 (444)
Q Consensus 160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~---a 233 (444)
.+.+++.+|..+...|++++|+..|+++++..|++ +++++.+|.++...|++++|+..|++++ +.+|+++. +
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l--~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI--RLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHCcCCCcHHHH
Confidence 46788999999999999999999999999988876 4799999999999999999999999999 89999875 5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC
Q 013375 234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (444)
Q Consensus 234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~ 313 (444)
++.+|.++... +. .. ...+..++..+.. .|++++|+..|++++ +.+
T Consensus 81 ~~~~g~~~~~~-~~-----~~----------------~~~~~~~~~~~~~-----------~~~~~~A~~~~~~~l-~~~ 126 (225)
T 2yhc_A 81 MYMRGLTNMAL-DD-----SA----------------LQGFFGVDRSDRD-----------PQQARAAFSDFSKLV-RGY 126 (225)
T ss_dssp HHHHHHHHHHH-HC-----------------------------------C-----------CHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHhh-hh-----hh----------------hhhhhccchhhcC-----------cHHHHHHHHHHHHHH-HHC
Confidence 56555544321 10 00 1122333433332 357899999999999 999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH---HH
Q 013375 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG---EL 390 (444)
Q Consensus 314 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~---~~ 390 (444)
|+++.++..+..+.. +.+.. ......+|.++..+|++++|+..|+++++..| +++ .+
T Consensus 127 P~~~~a~~a~~~l~~-----------------~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~a 186 (225)
T 2yhc_A 127 PNSQYTTDATKRLVF-----------------LKDRL-AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP--DTQATRDA 186 (225)
T ss_dssp TTCTTHHHHHHHHHH-----------------HHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TSHHHHHH
T ss_pred cCChhHHHHHHHHHH-----------------HHHHH-HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc--CCCccHHH
Confidence 999876643221111 11111 23445667777777777777777777777777 443 56
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 391 ~~~la~~~~~~g~~~~A~~~~~~al~l~~~~ 421 (444)
++.+|.++.++|++++|+..++++....|+.
T Consensus 187 ~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 187 LPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 7777777777777777777777776655544
No 88
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.82 E-value=1.9e-18 Score=166.25 Aligned_cols=228 Identities=13% Similarity=0.011 Sum_probs=155.8
Q ss_pred hcCCH-HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC----------chHHHHHHHHhhcCCCCCCChHHHHHHHHHH
Q 013375 173 IAGDL-SSLATQIEELLPGIINRKERYHILALCYYGAGE----------DLVALNLLRTLLSGSEDPKCLPALLIASKIC 241 (444)
Q Consensus 173 ~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~----------~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~ 241 (444)
..|.+ ++|+.++++++.++|++..+|+..+.++...|+ +++++..+..++ ..+|++..++...+.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L--~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL--RVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHH
Confidence 44555 367777777777777777777777777777665 567777777777 67777777777666554
Q ss_pred hcCCC--CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhh-HHHHHHHHHHHHHhhCCCCHH
Q 013375 242 GEYPD--LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATR-QAKALQALVSAARSTNMRDLS 318 (444)
Q Consensus 242 ~~~~~--~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~-~~eA~~~~~~al~~~~P~~~~ 318 (444)
.. .+ .+++++.++.++++..|.+ ..||.+.|.+.... +. .+++++.+.+++ +.+|.|..
T Consensus 119 ~~-l~~~~~~~EL~~~~k~l~~dprN-----y~AW~~R~~vl~~l-----------~~~~~eel~~~~~~I-~~~p~N~S 180 (331)
T 3dss_A 119 SR-LPEPNWARELELCARFLEADERN-----FHCWDYRRFVAAQA-----------AVAPAEELAFTDSLI-TRNFSNYS 180 (331)
T ss_dssp HH-CSSCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHT-----------TCCHHHHHHHHHHHH-HHCSCCHH
T ss_pred hc-cCcccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHh-----------CcCHHHHHHHHHHHH-HHCCCCHH
Confidence 33 34 3677777777777754443 45777777766543 23 467777888888 78888888
Q ss_pred HHHHHHHHHHHc--------------CCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc-----------cCHHHHHH
Q 013375 319 ILYRLSLEYAEQ--------------RKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-----------KRYEDAET 373 (444)
Q Consensus 319 a~~~lg~~~~~~--------------g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~-----------g~~~eA~~ 373 (444)
+|.+++.++... +.++++++++.+++.++|++ ..+|+.+..++... +.+++++.
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d-~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND-QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 888887777766 45777888888888888887 47776555555444 45777888
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 374 ILNAALDQTGKWEQGELLRTKAKVQL---VQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 374 ~~~~al~~~P~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
+++++++..| ++.-.+..++.+.. ..|..++....+.+++++.|.+.+
T Consensus 260 ~~~elle~~p--d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~ 310 (331)
T 3dss_A 260 SCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 310 (331)
T ss_dssp HHHHHHHHCT--TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHhhCc--ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhh
Confidence 8888888888 66333333322221 346677777788888877777655
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.82 E-value=3.9e-20 Score=172.65 Aligned_cols=208 Identities=18% Similarity=0.117 Sum_probs=141.4
Q ss_pred CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCC--------CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-
Q 013375 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSE--------DPKCLPALLIASKICGEYPDLAEEGATFASRALECL- 262 (444)
Q Consensus 192 p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~--------~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~- 262 (444)
|..+.+++.+|.++...|++++|+..|++++ .+ +|....++..+|.++ ...|++++|+.+++++++..
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDAL--AIREKTLGKDHPAVAATLNNLAVLY-GKRGKYKEAEPLCKRALEIRE 116 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHTCTTCHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHH--HHHHHHcCCcchHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555 33 233333444444433 33455555555555555532
Q ss_pred ---CCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcC
Q 013375 263 ---GDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST--------NMRDLSILYRLSLEYAEQR 331 (444)
Q Consensus 263 ---~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~--------~P~~~~a~~~lg~~~~~~g 331 (444)
+++ ......++..+|.++... |++++|+..|++++ .+ +|....++.++|.++..+|
T Consensus 117 ~~~~~~-~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 117 KVLGKF-HPDVAKQLNNLALLCQNQ-----------GKAEEVEYYYRRAL-EIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHTT-----------TCHHHHHHHHHHHH-HHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCC-ChHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 111 123457888899988765 57899999999999 88 7888899999999999999
Q ss_pred CHHHHHHHHHHHHhh---------cCCCChHHHHHHHHHHHHccC------HHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 013375 332 KLNAAHYYAKMLLKL---------EGGSNLKGWLLMARILSAQKR------YEDAETILNAALDQTGKWEQGELLRTKAK 396 (444)
Q Consensus 332 ~~~~A~~~~~~al~l---------~P~~~~~~~~~la~~l~~~g~------~~eA~~~~~~al~~~P~~~~~~~~~~la~ 396 (444)
++++|+..+++++++ +|.. ...|..++......+. +.++...++......| +...++..+|.
T Consensus 184 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~la~ 260 (283)
T 3edt_B 184 KYQDAETLYKEILTRAHEKEFGSVNGDN-KPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP--TVNTTLRSLGA 260 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSSCCSSC-CCHHHHHHHHHHTTCCCCC------------CCCCCCH--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcchhH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHH
Confidence 999999999999997 4555 3788888887776554 4444444544444556 67889999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHH
Q 013375 397 VQLVQGQLKGAVETYTHLLAAL 418 (444)
Q Consensus 397 ~~~~~g~~~~A~~~~~~al~l~ 418 (444)
++..+|++++|+..|++++++.
T Consensus 261 ~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 261 LYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhh
Confidence 9999999999999999998753
No 90
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.82 E-value=2.2e-19 Score=170.77 Aligned_cols=171 Identities=13% Similarity=0.069 Sum_probs=148.4
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH
Q 013375 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL 234 (444)
Q Consensus 155 ~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~ 234 (444)
...|.+++.+..+|..+...|++++|+..|+++++.+|+++++++.+|.++...|++++|+..|++++ ..+|+.....
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~--~~~p~~~~~~ 188 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP--LQDQDTRYQG 188 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC--GGGCSHHHHH
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc--hhhcchHHHH
Confidence 34599999999999999999999999999999999999999999999999999999999999999999 8899543222
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC
Q 013375 235 LIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM 314 (444)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P 314 (444)
+ .+.+ .+.. .++.++|+..|++++ +.+|
T Consensus 189 ~-~~~~---------------------------------------~l~~-----------~~~~~~a~~~l~~al-~~~P 216 (287)
T 3qou_A 189 L-VAQI---------------------------------------ELLX-----------QAADTPEIQQLQQQV-AENP 216 (287)
T ss_dssp H-HHHH---------------------------------------HHHH-----------HHTSCHHHHHHHHHH-HHCT
T ss_pred H-HHHH---------------------------------------HHHh-----------hcccCccHHHHHHHH-hcCC
Confidence 2 1111 1111 134567899999999 9999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 013375 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS--NLKGWLLMARILSAQKRYEDAETILNAALD 380 (444)
Q Consensus 315 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--~~~~~~~la~~l~~~g~~~eA~~~~~~al~ 380 (444)
+++.+++++|.++...|++++|+..|+++++++|++ . .++.+++.++..+|+.++|+..|++++.
T Consensus 217 ~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~-~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 217 EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG-QTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG-HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc-hHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999987 5 8999999999999999999999999885
No 91
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.81 E-value=1.5e-19 Score=158.81 Aligned_cols=171 Identities=17% Similarity=0.033 Sum_probs=135.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh
Q 013375 191 IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME 270 (444)
Q Consensus 191 ~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~ 270 (444)
+|...+.++.+|..+...|++++|+..|++++ ..+|+++.+++.+|.++.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~la~~~~---------------------------- 51 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLS--DELQSRGDVKLAKADCLL---------------------------- 51 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSC--HHHHTSHHHHHHHHHHHH----------------------------
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCcHHHHHHHHHHHH----------------------------
Confidence 45555667788888888888888888888888 778877776665554432
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhcCC
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEY-AEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~-~~~g~~~~A~~~~~~al~l~P~ 349 (444)
. .|++++|+..|++++ ..+| ++..+..++.+. ...++..+|+..++++++++|+
T Consensus 52 ------------~-----------~g~~~~A~~~~~~a~-~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~ 106 (176)
T 2r5s_A 52 ------------E-----------TKQFELAQELLATIP-LEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPD 106 (176)
T ss_dssp ------------H-----------TTCHHHHHHHHTTCC-GGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT
T ss_pred ------------H-----------CCCHHHHHHHHHHhh-hccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC
Confidence 2 245677888888888 8888 777766666443 2334455689999999999999
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013375 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (444)
Q Consensus 350 ~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 417 (444)
+ ..+|+.+|.++..+|++++|+..|+++++.+|++.+..++.++|.++..+|+.++|+..|++++..
T Consensus 107 ~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 107 N-FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 9 599999999999999999999999999999993334679999999999999999999999999864
No 92
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.81 E-value=1e-17 Score=161.08 Aligned_cols=242 Identities=11% Similarity=-0.024 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC
Q 013375 139 EEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGD----------LSSLATQIEELLPGIINRKERYHILALCYYGA 208 (444)
Q Consensus 139 ~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~ 208 (444)
++|+.+ .+.++..+|++..+|+..+.++...|+ +++++..++.++..+|.+..+|+..+.++...
T Consensus 47 ~eaL~~-----t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l 121 (331)
T 3dss_A 47 ESVLEL-----TSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 121 (331)
T ss_dssp HHHHHH-----HHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc
Confidence 477776 367889999999999999999998876 68999999999999999999999999999999
Q ss_pred CC--chHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhh
Q 013375 209 GE--DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDL-AEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS 285 (444)
Q Consensus 209 g~--~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~-~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~ 285 (444)
|+ +++++..+.+++ ..+|.|..++...+.+... .|. .++++.+++++++..|.+ ..||+++|.++....
T Consensus 122 ~~~~~~~EL~~~~k~l--~~dprNy~AW~~R~~vl~~-l~~~~~eel~~~~~~I~~~p~N-----~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 122 PEPNWARELELCARFL--EADERNFHCWDYRRFVAAQ-AAVAPAEELAFTDSLITRNFSN-----YSSWHYRSCLLPQLH 193 (331)
T ss_dssp SSCCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHCSCC-----HHHHHHHHHHHHHHS
T ss_pred CcccHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHhh
Confidence 95 899999999999 8999999999988777544 566 699999999999976554 578999998887652
Q ss_pred hhhhchH---HHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhcCCCC
Q 013375 286 KVAITDF---DRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ-----------RKLNAAHYYAKMLLKLEGGSN 351 (444)
Q Consensus 286 ~~~~~~~---~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~-----------g~~~~A~~~~~~al~l~P~~~ 351 (444)
....... ...+.++++++.+.+++ .++|+|..+|+++..++... +.++++++.+++++++.|++
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai-~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAF-FTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred hccccccccccchHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 1110000 01256899999999999 99999999998887776655 46899999999999999997
Q ss_pred hHHHHHHHHHHH---HccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013375 352 LKGWLLMARILS---AQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (444)
Q Consensus 352 ~~~~~~la~~l~---~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~ 397 (444)
.-++..++.+.. ..|.+++...++.+.++++| ....-|.-++.-
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp--~r~~~y~d~~~~ 318 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP--MRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG--GGHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc--chhhHHHHHHHH
Confidence 344444443332 35788999999999999999 666666555443
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.81 E-value=8.4e-19 Score=166.78 Aligned_cols=169 Identities=15% Similarity=-0.008 Sum_probs=153.6
Q ss_pred CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013375 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (444)
Q Consensus 192 p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (444)
|++++.++.+|..+...|++++|+..|++++ ..+|+++.+++.+|.++..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~la~~~~~---------------------------- 163 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAW--QLSNQNGEIGLLLAETLIA---------------------------- 163 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHTTSCHHHHHHHHHHHHH----------------------------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHH--HhCCcchhHHHHHHHHHHH----------------------------
Confidence 8899999999999999999999999999999 8999998887766655432
Q ss_pred HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013375 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (444)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 351 (444)
.|++++|+..|++++ ..+|++...+...+..+...++.++|+..|+++++++|++
T Consensus 164 -----------------------~g~~~~A~~~l~~~~-~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~- 218 (287)
T 3qou_A 164 -----------------------LNRSEDAEAVLXTIP-LQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED- 218 (287)
T ss_dssp -----------------------TTCHHHHHHHHTTSC-GGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC-
T ss_pred -----------------------CCCHHHHHHHHHhCc-hhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc-
Confidence 245788888888888 8999878788888888999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013375 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ--GELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (444)
Q Consensus 352 ~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~l 417 (444)
..+++++|.++...|++++|+..|+++++.+| ++ ..++.+++.++..+|+.++|...|++++..
T Consensus 219 ~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p--~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 219 AALATQLALQLHQVGRNEEALELLFGHLRXDL--TAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc--ccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 59999999999999999999999999999999 66 899999999999999999999999999874
No 94
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.81 E-value=5.7e-20 Score=157.75 Aligned_cols=121 Identities=10% Similarity=0.113 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Q 013375 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (444)
Q Consensus 298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~ 377 (444)
...+-..+++++ .++|+++.+++.+|.++..+|++++|+..|+++++++|++ ..+|.++|.++..+|+|++|+.+|++
T Consensus 18 ~~~~~~~l~~al-~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~-~~~~~~lg~~~~~~g~~~~Ai~~~~~ 95 (151)
T 3gyz_A 18 AINSGATLKDIN-AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-VDYIMGLAAIYQIKEQFQQAADLYAV 95 (151)
T ss_dssp HHHTSCCTGGGC-CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHCCCCHHHHh-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 344556788999 9999999999999999999999999999999999999999 59999999999999999999999999
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375 378 ALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 378 al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
+++++| +++.+|+++|.++..+|++++|+..|++++++.|+..
T Consensus 96 al~l~P--~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 96 AFALGK--NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHSS--SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999 8999999999999999999999999999999998654
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.80 E-value=7.7e-19 Score=160.64 Aligned_cols=176 Identities=11% Similarity=-0.053 Sum_probs=118.0
Q ss_pred CHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh
Q 013375 194 RKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL---PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQME 270 (444)
Q Consensus 194 ~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~---~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~ 270 (444)
.++.++++|..++..|++++|+..|++++ ...|+++ .+++.+|.+++ ..|++++|+..|+++++..|.+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~--~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~--~ 77 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALD--NRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPN--I 77 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTT--H
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCc--H
Confidence 57789999999999999999999999999 7888764 46666665544 357777777777777776554421 2
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
..+++.+|.++...+. .....+..++.++...|++++|+..|+++++..|++
T Consensus 78 ~~a~~~~g~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~ 129 (225)
T 2yhc_A 78 DYVMYMRGLTNMALDD----------------------------SALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS 129 (225)
T ss_dssp HHHHHHHHHHHHHHHC------------------------------------------CCHHHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHhhhh----------------------------hhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC
Confidence 3466777776654321 111234445556666788888999999999888888
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
+ .++..+..+. .+.+ ......+.+|.++...|++++|+..|+++++..|+..
T Consensus 130 ~-~a~~a~~~l~-----------------~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 181 (225)
T 2yhc_A 130 Q-YTTDATKRLV-----------------FLKD--RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ 181 (225)
T ss_dssp T-THHHHHHHHH-----------------HHHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred h-hHHHHHHHHH-----------------HHHH--HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence 5 5554322211 1112 2234457899999999999999999999999988754
No 96
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.79 E-value=2.4e-18 Score=166.26 Aligned_cols=248 Identities=10% Similarity=-0.051 Sum_probs=190.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC-CchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013375 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAG-EDLVALNLLRTLLSGSEDPKCLPALLIA 237 (444)
Q Consensus 159 ~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g-~~~~A~~~~~~al~~~~~P~~~~a~~~~ 237 (444)
+..+++..+..++...+..++|++.++++|.++|++..+|+..+.++...| .+++++..+.+++ ..+|++..++...
T Consensus 52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L--~~nPKny~aW~hR 129 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFA--VQNLKSYQVWHHR 129 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH--HTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--HhCCCcHHHHHHH
Confidence 344455566666666777788999999999999999999999999999888 4889999999999 8899999888877
Q ss_pred HHHHhcCCC-CHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC
Q 013375 238 SKICGEYPD-LAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD 316 (444)
Q Consensus 238 ~~~~~~~~~-~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~ 316 (444)
+.+.....+ ++++++.++.++++..|.+ ..+|.+.+.++...+...... .....++++.+++++ +.+|.|
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkN-----y~AW~~R~wvl~~l~~~~~~~---~~~~~eELe~~~k~I-~~dp~N 200 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLLPDPKN-----YHTWAYLHWLYSHFSTLGRIS---EAQWGSELDWCNEML-RVDGRN 200 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTSSCTTC-----HHHHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHHHH-HHCTTC
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhccccccc---hhhHHHHHHHHHHHH-HhCCCC
Confidence 766544325 7788899999998854443 568888888876654321000 012349999999999 999999
Q ss_pred HHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCH--------------------H
Q 013375 317 LSILYRLSLEYAEQRK-------LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY--------------------E 369 (444)
Q Consensus 317 ~~a~~~lg~~~~~~g~-------~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~--------------------~ 369 (444)
..+|++.+.++...++ ++++++++++++.++|++ ..+|+.+..++...|+- .
T Consensus 201 ~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n-~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (349)
T 3q7a_A 201 NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN-VSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIE 279 (349)
T ss_dssp HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCCcccccccccccccccccccch
Confidence 9999999999999987 799999999999999999 59999999999888774 2
Q ss_pred HHHHHHHHHHhhc------CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHh
Q 013375 370 DAETILNAALDQT------GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL-AALQV 420 (444)
Q Consensus 370 eA~~~~~~al~~~------P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~l~~~ 420 (444)
+-...+...+... + ....++..++.++...|+.++|+++|+.+. +..|-
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~--~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 280 TVEAFGFPMPSDPLPEDTPL--PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp ------CCCCC-CCCSSCCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred hHHHHHHHHHhcccccccCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 3333333333322 3 577899999999999999999999999986 34443
No 97
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.79 E-value=8.6e-19 Score=172.89 Aligned_cols=254 Identities=9% Similarity=-0.002 Sum_probs=173.6
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhC
Q 013375 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL 91 (444)
Q Consensus 12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~ 91 (444)
.++.+|..+...|++++|+..|+++++..... ++ .+....++..+|.+|...|++++|+..|++++.
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----~~--------~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~ 169 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFV-----SD--------DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD 169 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-----CC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC-----CC--------hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56778888888888888888888888654321 11 112456777888888888888888888888887
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013375 92 PCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAF 171 (444)
Q Consensus 92 ~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l 171 (444)
. .+.. +.+. +....++..+|.++
T Consensus 170 ~----~~~~-----------------------------------~~~~------------------~~~~~~~~~lg~~y 192 (378)
T 3q15_A 170 I----YQNH-----------------------------------PLYS------------------IRTIQSLFVIAGNY 192 (378)
T ss_dssp H----HHTS-----------------------------------TTCH------------------HHHHHHHHHHHHHH
T ss_pred H----HHhC-----------------------------------CCch------------------hhHHHHHHHHHHHH
Confidence 6 1100 0000 01234567888888
Q ss_pred HhcCCHHHHHHHHHhhcCCCC------CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCC-----CCCCChHHHHHHHHH
Q 013375 172 SIAGDLSSLATQIEELLPGII------NRKERYHILALCYYGAGEDLVALNLLRTLLSGS-----EDPKCLPALLIASKI 240 (444)
Q Consensus 172 ~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~-----~~P~~~~a~~~~~~~ 240 (444)
...|++++|++.|++++++.+ ....+++++|.++..+|++++|+..|++++ . .+|..+.++..+|.+
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA--KVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHHHHHCGGGHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHhhCChhHHHHHHHHHHH
Confidence 888888888888888887532 234678888888888899999999998888 7 777777777777777
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013375 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL 320 (444)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~ 320 (444)
+.. .|++++|+.++++++++.+.............++..+...+.. ..+.+|+..+++. ...|+...++
T Consensus 271 ~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~--------~~~~~al~~~~~~--~~~~~~~~~~ 339 (378)
T 3q15_A 271 LCK-AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE--------RKIHDLLSYFEKK--NLHAYIEACA 339 (378)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH--------HHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHH-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH--------HHHHHHHHHHHhC--CChhHHHHHH
Confidence 654 6888889999988888754422211122334455554433210 2356777777652 3445556677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013375 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEG 348 (444)
Q Consensus 321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P 348 (444)
..+|.++...|++++|+.+|++++++..
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 7778888888888888888887776643
No 98
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.79 E-value=8.1e-19 Score=145.72 Aligned_cols=114 Identities=12% Similarity=-0.025 Sum_probs=105.6
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC
Q 013375 307 SAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE 386 (444)
Q Consensus 307 ~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~ 386 (444)
++. .+||+.++++.++|.++.+.|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+..|+++++++| +
T Consensus 4 r~a-~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~ 79 (126)
T 4gco_A 4 RLA-YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN-AILYSNRAACLTKLMEFQRALDDCDTCIRLDS--K 79 (126)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T
T ss_pred HHH-HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh--h
Confidence 455 7999999999999999999999999999999999999999 59999999999999999999999999999999 8
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375 387 QGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 387 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
+..+|+++|.++..+|++++|+..|++++++.|++.+.
T Consensus 80 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 80 FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999999999999999999999987663
No 99
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.78 E-value=4.5e-18 Score=141.20 Aligned_cols=114 Identities=12% Similarity=0.090 Sum_probs=107.3
Q ss_pred hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 349 (444)
.+.++..+|..+... |++++|++.|++++ +++|+++.+|+++|.++..+|++++|+..|+++++++|+
T Consensus 12 ~a~~~~~~G~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 12 LAQEEKNKGNEYFKK-----------GDYPTAMRHYNEAV-KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 367888999998765 67999999999999 999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (444)
Q Consensus 350 ~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~ 398 (444)
+ ..+|.++|.++..+|++++|+..|+++++++| ++..++..++.++
T Consensus 80 ~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P--~~~~a~~~l~~~l 125 (126)
T 4gco_A 80 F-IKGYIRKAACLVAMREWSKAQRAYEDALQVDP--SNEEAREGVRNCL 125 (126)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHC
T ss_pred h-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc--CCHHHHHHHHHhc
Confidence 9 59999999999999999999999999999999 9999999988764
No 100
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.78 E-value=1.7e-19 Score=168.96 Aligned_cols=219 Identities=12% Similarity=-0.015 Sum_probs=179.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHH-------HHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013375 165 DHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHIL-------ALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (444)
Q Consensus 165 ~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~ 237 (444)
+..|..+ ..+++..|.+.|.+++.++|+.+++|..+ +.++...+++.+++..+++++ .+.|+...+++..
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEEC
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhcc
Confidence 3445555 68999999999999999999999999999 899999999999999999999 9999987766531
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH
Q 013375 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (444)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~ 317 (444)
++++ |+. + .+-. .....+..++.++.. .|++++|.+.|..++ ..+|++.
T Consensus 88 ~g~y----~~~-----------~-~~v~---~r~dl~LayA~~L~~-----------~g~y~eA~~~l~~~~-~~~p~~~ 136 (282)
T 4f3v_A 88 GGLY----GDI-----------T-YPVT---SPLAITMGFAACEAA-----------QGNYADAMEALEAAP-VAGSEHL 136 (282)
T ss_dssp CTTT----CCC-----------E-EECS---SHHHHHHHHHHHHHH-----------HTCHHHHHHHHTSSC-CTTCHHH
T ss_pred CCcc----ccc-----------c-cccC---CHhHHHHHHHHHHHH-----------CCCHHHHHHHHHHHH-hcCCchH
Confidence 2211 000 0 1111 012344555555544 467999999999999 9999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc--CCCC-cHHHHHH
Q 013375 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLE-GGSNLKGWLLMARILSAQKRYEDAETILNAALDQT--GKWE-QGELLRT 393 (444)
Q Consensus 318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~--P~~~-~~~~~~~ 393 (444)
+++.+|.++.+.|++++|+..|++++... |.....+++++|.++..+|++++|+.+|++++... | . ..+++++
T Consensus 137 -~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P--~~~~da~~~ 213 (282)
T 4f3v_A 137 -VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGE--ACARAIAWY 213 (282)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTT--TTHHHHHHH
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCc--cccHHHHHH
Confidence 99999999999999999999999887753 22112589999999999999999999999999654 6 4 6789999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375 394 KAKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 394 la~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
+|.++..+|+.++|...|+++++..|+
T Consensus 214 ~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 214 LAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999997
No 101
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.78 E-value=1.3e-18 Score=162.22 Aligned_cols=233 Identities=16% Similarity=0.050 Sum_probs=178.2
Q ss_pred CCCcHHHHHHHHHHHHH--HHHHh-hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC--------CCCCHHHHHHHH
Q 013375 134 PRNNIEEAILLLMILLR--KVALK-RIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPG--------IINRKERYHILA 202 (444)
Q Consensus 134 ~~~~~~eAi~~l~~~~~--~~~l~-~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la 202 (444)
..|++++|+..+..++. +.+.. ..|..+.++..+|.++...|++++|+..|++++++ +|....++.++|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45666677776644421 22222 23667789999999999999999999999999976 577788999999
Q ss_pred HHHHHCCCchHHHHHHHHhhcCCC--------CCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc---CCCcchhhh
Q 013375 203 LCYYGAGEDLVALNLLRTLLSGSE--------DPKCLPALLIASKICGEYPDLAEEGATFASRALECL---GDGCDQMES 271 (444)
Q Consensus 203 ~~l~~~g~~~~A~~~~~~al~~~~--------~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~---~~~~~~~~~ 271 (444)
.++...|++++|+..|++++ .. +|....++..+|.++ ...|++++|+.+++++++.. .+...+...
T Consensus 93 ~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRAL--EIREKVLGKFHPDVAKQLNNLALLC-QNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHH--HHHHHHHCTTCHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHH--HHHHHHcCCCChHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 99999999999999999999 66 466677788777765 45799999999999999962 111122346
Q ss_pred HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHcCC------HHHH
Q 013375 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST---------NMRDLSILYRLSLEYAEQRK------LNAA 336 (444)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~---------~P~~~~a~~~lg~~~~~~g~------~~~A 336 (444)
.++..+|.++... |++++|+..|++++ ++ +|.....+..++......+. +.++
T Consensus 170 ~~~~~la~~~~~~-----------g~~~~A~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (283)
T 3edt_B 170 KTKNNLASCYLKQ-----------GKYQDAETLYKEIL-TRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY 237 (283)
T ss_dssp HHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-HHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------
T ss_pred HHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 7889999998765 67899999999999 87 67777788888887776444 4555
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013375 337 HYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (444)
Q Consensus 337 ~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~ 382 (444)
...++......|+. ..++..+|.++..+|++++|+.+++++++..
T Consensus 238 ~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 238 GSWYKACKVDSPTV-NTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp -----CCCCCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 55555555556666 4899999999999999999999999999753
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.77 E-value=5.5e-18 Score=176.46 Aligned_cols=165 Identities=13% Similarity=-0.011 Sum_probs=93.6
Q ss_pred cCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHH
Q 013375 174 AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGAT 253 (444)
Q Consensus 174 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~ 253 (444)
.|++++|++.|+++++.+|+++.+|+++|.++...|++++|+..|++++ .++|+++.++..+|.++.. .|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~-~g~------ 72 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL--ALHPGHPEAVARLGRVRWT-QQR------ 72 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--TTSTTCHHHHHHHHHHHHH-TTC------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHH-CCC------
Confidence 4788999999999999999999999999999999999999999999999 8999888777666555432 344
Q ss_pred HHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 013375 254 FASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL 333 (444)
Q Consensus 254 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~ 333 (444)
+++|++.|++++ +++|+++.+++++|.++..+|++
T Consensus 73 --------------------------------------------~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~ 107 (568)
T 2vsy_A 73 --------------------------------------------HAEAAVLLQQAS-DAAPEHPGIALWLGHALEDAGQA 107 (568)
T ss_dssp --------------------------------------------HHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCH
T ss_pred --------------------------------------------HHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHcCCH
Confidence 455555555555 55555555555555555555555
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc---cCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013375 334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ---KRYEDAETILNAALDQTGKWEQGELLRTKA 395 (444)
Q Consensus 334 ~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~---g~~~eA~~~~~~al~~~P~~~~~~~~~~la 395 (444)
++|++.|+++++++|++ ..++.++|.++..+ |++++|+..++++++.+| ++...+..++
T Consensus 108 ~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~ 169 (568)
T 2vsy_A 108 EAAAAAYTRAHQLLPEE-PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV--GAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC--CCSCHHHHTT
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC--cccChHHHhC
Confidence 55555555555555555 35555555555555 555555555555555555 4444444333
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.76 E-value=4e-18 Score=146.17 Aligned_cols=84 Identities=8% Similarity=0.025 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Q 013375 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNA 377 (444)
Q Consensus 298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~ 377 (444)
+++|+..|++++ .++|+++.+|+++|.++..+|++++|+..|+++++++|+++ .+|+++|.++..+|++++|+.+|++
T Consensus 52 ~~eA~~~~~~al-~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~-~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 52 IEEAEVFFRFLC-IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY-TPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC-HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc-HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444 44444444444444444444444444444444444444442 4444444444444444444444444
Q ss_pred HHhhcC
Q 013375 378 ALDQTG 383 (444)
Q Consensus 378 al~~~P 383 (444)
++++.|
T Consensus 130 al~l~~ 135 (151)
T 3gyz_A 130 VIQHSN 135 (151)
T ss_dssp HHHHCC
T ss_pred HHHhCC
Confidence 444444
No 104
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.76 E-value=9.9e-20 Score=177.31 Aligned_cols=164 Identities=15% Similarity=0.019 Sum_probs=136.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC---------
Q 013375 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD--------- 316 (444)
Q Consensus 246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~--------- 316 (444)
+.+++|+..++++++..| ....++..+|.++... +++++|+..|++++ .++|++
T Consensus 127 ~~~~~A~~~~~~a~~~~p-----~~a~~~~~~g~~~~~~-----------g~~~~A~~~y~~Al-~~~p~~~~~~~~~~~ 189 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKL-----EQSTIVKERGTVYFKE-----------GKYKQALLQYKKIV-SWLEYESSFSNEEAQ 189 (336)
T ss_dssp EEEECCCCGGGCCHHHHH-----HHHHHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-HHTTTCCCCCSHHHH
T ss_pred eecccccchhcCCHHHHH-----HHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHH-HHhhccccCChHHHH
Confidence 445556666665555322 1256677777777654 56788888888888 888888
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013375 317 ------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (444)
Q Consensus 317 ------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~ 390 (444)
..+++++|.++..+|++++|+..|+++++++|++ ..+|+++|.++..+|++++|+..|+++++++| ++..+
T Consensus 190 ~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~a 266 (336)
T 1p5q_A 190 KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN-EKGLSRRGEAHLAVNDFELARADFQKVLQLYP--NNKAA 266 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHH
Confidence 6999999999999999999999999999999999 59999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHhCCHHHH-HHHHHHHHHHHHhhhhhccCcc
Q 013375 391 LRTKAKVQLVQGQLKGA-VETYTHLLAALQVQTKTFSSDK 429 (444)
Q Consensus 391 ~~~la~~~~~~g~~~~A-~~~~~~al~l~~~~~~~~~~~~ 429 (444)
+..++.++..+|++++| ...|+++++......+......
T Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 306 (336)
T 1p5q_A 267 KTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEA 306 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 99999999999999999 6689999988776666544443
No 105
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.75 E-value=9.2e-18 Score=159.10 Aligned_cols=199 Identities=13% Similarity=-0.018 Sum_probs=163.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHH
Q 013375 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIA 237 (444)
Q Consensus 158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~ 237 (444)
|.++..+..+|.++...|++++|+..|++++..+|+++.+|+++|.++..+|++++|+..|++++ .++|+++.+++.+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL--ELDGQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT--TSCTTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhCCCCHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999999999999999999 8999999999988
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH
Q 013375 238 SKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL 317 (444)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~ 317 (444)
|.++. ..|++++|+..|+++++..|.+...+...++..+ +..++........ ...|.++
T Consensus 79 g~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~-~~~~~~~ 137 (281)
T 2c2l_A 79 GQCQL-EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-------------------RIAKKKRWNSIEE-RRIHQES 137 (281)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH-------------------HHHHHHHHHHHHH-TCCCCCC
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-------------------HHHHHHHHHHHHH-HHHhhhH
Confidence 87765 5789999999999999976543222212222211 1234444555566 7889999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc-cCHHHHHHHHHHHHhhc
Q 013375 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-KRYEDAETILNAALDQT 382 (444)
Q Consensus 318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~-g~~~eA~~~~~~al~~~ 382 (444)
.+...++.++ .|++++|++.++++++++|++ ......++.++... +++++|...|.++.+..
T Consensus 138 ~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 138 ELHSYLTRLI--AAERERELEECQRNHEGHEDD-GHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCH-HHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhhhccccch-hhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9988888765 689999999999999999987 47777777777666 77899999999887644
No 106
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=1e-15 Score=167.29 Aligned_cols=308 Identities=11% Similarity=0.035 Sum_probs=213.9
Q ss_pred HHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCcc-----ccHHH---HHHHHHH--------HHHHHHHHhCCh
Q 013375 16 KAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGAD-----CKLQE---TLNRAVE--------LLPELWKLADAP 79 (444)
Q Consensus 16 ~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~l~~---~~~~a~~--------~l~~~~~~~g~~ 79 (444)
..++|...|.+.+|++.+++++-. ++.+. ++.... +.+.. -...... ..|.++...|.+
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~-~s~fs----~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLD-NSVFS----EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELF 1065 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcC-CCccc----ccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCH
Confidence 455666899999999999998822 11000 000000 00000 0111222 257889999999
Q ss_pred HHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCC
Q 013375 80 RETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEW 159 (444)
Q Consensus 80 ~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~ 159 (444)
+||+..|+++-.. + . .. ..++ ...+++++|+... . ..+
T Consensus 1066 EEAf~IYkKa~~~----~-~-------A~-~VLi-------------------e~i~nldrAiE~A---------e-rvn 1103 (1630)
T 1xi4_A 1066 EEAFAIFRKFDVN----T-S-------AV-QVLI-------------------EHIGNLDRAYEFA---------E-RCN 1103 (1630)
T ss_pred HHHHHHHHHcCCH----H-H-------HH-HHHH-------------------HHHhhHHHHHHHH---------H-hcC
Confidence 9999999997532 1 1 01 1111 1245788888764 1 257
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCC-hHHHHHHH
Q 013375 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKC-LPALLIAS 238 (444)
Q Consensus 160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~-~~a~~~~~ 238 (444)
.+.+|+.+|.++...|++++|+.+|.++ ++++.|+.+|.++...|++++|++.|..|. +..|+. +... ++
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mAr--k~~~e~~Idt~--La 1174 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMAR--KKARESYVETE--LI 1174 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhcccccccHH--HH
Confidence 8999999999999999999999999886 889999999999999999999999999999 666542 3322 33
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHH
Q 013375 239 KICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLS 318 (444)
Q Consensus 239 ~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~ 318 (444)
.++.+.+++++ +..| ++ .++ ...+..+|..+... |++++|+..|.++-
T Consensus 1175 -faYAKl~rlee-le~f---I~--~~n-----~ad~~~iGd~le~e-----------g~YeeA~~~Y~kA~--------- 1222 (1630)
T 1xi4_A 1175 -FALAKTNRLAE-LEEF---IN--GPN-----NAHIQQVGDRCYDE-----------KMYDAAKLLYNNVS--------- 1222 (1630)
T ss_pred -HHHHhhcCHHH-HHHH---Hh--CCC-----HHHHHHHHHHHHhc-----------CCHHHHHHHHHhhh---------
Confidence 34455678764 4433 32 222 24566788888664 57899999998763
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~ 398 (444)
.|..+|.++.++|++++|++.+++| .+ ..+|...+.+....|+|..|..+... +..+| + -+..++..+
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA-----~n-~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~--d---eLeeli~yY 1290 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKA-----NS-TRTWKEVCFACVDGKEFRLAQMCGLH-IVVHA--D---ELEELINYY 1290 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHh-----CC-HHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCH--H---HHHHHHHHH
Confidence 6889999999999999999999998 33 37787777777777778877777663 55555 3 333667777
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 399 LVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 399 ~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
...|.+++|+..|+++|.+.+.+.+
T Consensus 1291 e~~G~feEAI~LlE~aL~LeraH~g 1315 (1630)
T 1xi4_A 1291 QDRGYFEELITMLEAALGLERAHMG 1315 (1630)
T ss_pred HHcCCHHHHHHHHHHHhccChhHhH
Confidence 7778888888888777777665544
No 107
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.75 E-value=1.2e-17 Score=142.70 Aligned_cols=118 Identities=14% Similarity=0.067 Sum_probs=113.0
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013375 303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (444)
Q Consensus 303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~ 382 (444)
..|++++ .++|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|.++|.++..+|++++|+.+|++++.++
T Consensus 8 ~~~~~al-~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLN-EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-SRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHT-TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHH-cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4688999 9999999999999999999999999999999999999999 5999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375 383 GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 383 P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
| +++.+++++|.++..+|++++|+..|++++++.|++...
T Consensus 86 p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 86 I--XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp T--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred C--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 9 899999999999999999999999999999999976543
No 108
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.75 E-value=1.9e-16 Score=152.93 Aligned_cols=239 Identities=9% Similarity=0.000 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC-C-CchHH
Q 013375 138 IEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAG-DLSSLATQIEELLPGIINRKERYHILALCYYGA-G-EDLVA 214 (444)
Q Consensus 138 ~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~-g-~~~~A 214 (444)
.++|+.+. +.++..+|++..+|+..+.++...| .+++++..+++++..+|++..+|+..+.++... + +++++
T Consensus 70 se~AL~lt-----~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 70 SERALELT-----EIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp SHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CHHHHHHH-----HHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 45677653 6678999999999999999999999 599999999999999999999999999999998 8 99999
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHH--------HHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhh
Q 013375 215 LNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE--------EGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (444)
Q Consensus 215 ~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~--------eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (444)
+..+.+++ ..+|+|..++...+.+. ...+.++ +++.+++++++..+.+ ..||++.|.++...+.
T Consensus 145 L~~~~k~L--~~dpkNy~AW~~R~wvl-~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N-----~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 145 IEYIHGSL--LPDPKNYHTWAYLHWLY-SHFSTLGRISEAQWGSELDWCNEMLRVDGRN-----NSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHHT--SSCTTCHHHHHHHHHHH-HHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHTTSTT
T ss_pred HHHHHHHH--HhCCCCHHHHHHHHHHH-HHhccccccchhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhccc
Confidence 99999999 99999999998776664 3344555 9999999999975544 5799999998877543
Q ss_pred hhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHhh
Q 013375 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL--------------------NAAHYYAKMLLKL 346 (444)
Q Consensus 287 ~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~--------------------~~A~~~~~~al~l 346 (444)
... ....++++++.+++++ .++|+|..+|+++..++...|+. .+-...+...+..
T Consensus 217 ~~~----~~~~~~eELe~~~~aI-~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 217 AET----SSRSLQDELIYILKSI-HLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp CCC----CHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred ccc----chHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 110 1124789999999999 99999999999999999887764 3344444444443
Q ss_pred c------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHH-hhcCCCCcHHHHHHHHHH
Q 013375 347 E------GGSNLKGWLLMARILSAQKRYEDAETILNAAL-DQTGKWEQGELLRTKAKV 397 (444)
Q Consensus 347 ~------P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al-~~~P~~~~~~~~~~la~~ 397 (444)
. +.+ .-++..++.++..+|+.++|+.+|+... +.+| -....|..++..
T Consensus 292 ~~~~~~~~~s-~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp--ir~~yw~~~~~~ 346 (349)
T 3q7a_A 292 PLPEDTPLPV-PLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ--MRAGYWEFRRRE 346 (349)
T ss_dssp CCCSSCCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG--GGHHHHHHHHHH
T ss_pred ccccccCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh--HHHHHHHHHHHh
Confidence 3 455 4899999999999999999999999987 6788 778888777654
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.75 E-value=7e-17 Score=146.38 Aligned_cols=190 Identities=16% Similarity=0.080 Sum_probs=147.5
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCC----CHHHHHHH
Q 013375 179 SLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPD----LAEEGATF 254 (444)
Q Consensus 179 ~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~----~~~eA~~~ 254 (444)
+|+..|+++.+. +++.++++||.+|...|++++|+..|++++ . ++++.+++.+|.++.. + ++++|+.+
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~--~--~g~~~a~~~lg~~y~~--~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAA--A--QGDGDALALLAQLKIR--NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--H--TTCHHHHHHHHHHTTS--STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH--H--cCCHHHHHHHHHHHHc--CCCCCCHHHHHHH
Confidence 466777777764 778888888888888888888888888888 3 4677788777776544 4 78888888
Q ss_pred HHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH---
Q 013375 255 ASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNM--RDLSILYRLSLEYAE--- 329 (444)
Q Consensus 255 ~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P--~~~~a~~~lg~~~~~--- 329 (444)
|+++++. .+ ..+++.||.+|..-.. -.+++++|+..|++++ +.+| +++.++++||.+|..
T Consensus 76 ~~~A~~~--g~-----~~a~~~Lg~~y~~g~g-------~~~d~~~A~~~~~~A~-~~~~~~~~~~a~~~Lg~~y~~g~g 140 (212)
T 3rjv_A 76 AEKAVEA--GS-----KSGEIVLARVLVNRQA-------GATDVAHAITLLQDAA-RDSESDAAVDAQMLLGLIYASGVH 140 (212)
T ss_dssp HHHHHHT--TC-----HHHHHHHHHHHTCGGG-------SSCCHHHHHHHHHHHT-SSTTSHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHC--CC-----HHHHHHHHHHHHcCCC-------CccCHHHHHHHHHHHH-HcCCCcchHHHHHHHHHHHHcCCC
Confidence 8888762 21 4678888888764110 0246899999999999 9988 459999999999999
Q ss_pred -cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc-c-----CHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013375 330 -QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ-K-----RYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (444)
Q Consensus 330 -~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~-g-----~~~eA~~~~~~al~~~P~~~~~~~~~~la~~ 397 (444)
.+++++|+.+|++++++ |.++ .++++||.+|... | ++++|+.+|++|++..+ ..+...++.+
T Consensus 141 ~~~d~~~A~~~~~~A~~~-~~~~-~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~----~~A~~~l~~l 209 (212)
T 3rjv_A 141 GPEDDVKASEYFKGSSSL-SRTG-YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF----DTGCEEFDRI 209 (212)
T ss_dssp SSCCHHHHHHHHHHHHHT-SCTT-HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC----HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCCH-HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHh
Confidence 88999999999999998 6665 8999999999765 3 89999999999998754 3455555443
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.73 E-value=5.6e-17 Score=168.81 Aligned_cols=156 Identities=10% Similarity=-0.099 Sum_probs=128.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013375 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL 325 (444)
Q Consensus 246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~ 325 (444)
|++++|+..|+++++..|.+ ..+++.+|.++... |++++|++.|++++ +++|+++.+++++|.
T Consensus 3 g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~lg~ 65 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQD-----FVAWLMLADAELGM-----------GDTTAGEMAVQRGL-ALHPGHPEAVARLGR 65 (568)
T ss_dssp ------------------CC-----HHHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-TTSTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHHH
Confidence 45667777777777744332 45677777777654 57899999999999 999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh---C
Q 013375 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ---G 402 (444)
Q Consensus 326 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~---g 402 (444)
++..+|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+.+|+++++.+| ++..++.++|.++..+ |
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~g 142 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDAAPEH-PGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEPYITAQLLNWRRRLCDWR 142 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999 59999999999999999999999999999999 8999999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 013375 403 QLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 403 ~~~~A~~~~~~al~l~~~~ 421 (444)
++++|++.|+++++..|+.
T Consensus 143 ~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 143 ALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp THHHHHHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHHHhcCCcc
Confidence 9999999999999998864
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.73 E-value=5.7e-17 Score=155.47 Aligned_cols=228 Identities=13% Similarity=0.044 Sum_probs=161.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchH
Q 013375 135 RNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSI-AGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (444)
Q Consensus 135 ~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~ 213 (444)
.|++++|..++.. +.+..+.. +.. .+++++|+..|+++ |.+|...|++++
T Consensus 4 ~~~~~eA~~~~~~-----a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~ 54 (307)
T 2ifu_A 4 AQKISEAHEHIAK-----AEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQ 54 (307)
T ss_dssp HHHHHHHHHHHHH-----HHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHH
T ss_pred cchHHHHHHHHHH-----HHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHH
Confidence 4577888877532 22322321 112 47888888887765 667888888888
Q ss_pred HHHHHHHhhcCCCCCCC------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhhhhhhhhh
Q 013375 214 ALNLLRTLLSGSEDPKC------LPALLIASKICGEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSK 286 (444)
Q Consensus 214 A~~~~~~al~~~~~P~~------~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~ 286 (444)
|+..|.+++ .+.+.. ..++..+|.+ +...|++++|+.+|++++++.... +......++..+|.+|..
T Consensus 55 A~~~~~~al--~~~~~~~~~~~~a~~~~~lg~~-~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~--- 128 (307)
T 2ifu_A 55 AKDAYLQEA--EAHANNRSLFHAAKAFEQAGMM-LKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP--- 128 (307)
T ss_dssp HHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHH-HHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc---
Confidence 888888888 555432 2344444444 455678888888888888864322 122335678888888854
Q ss_pred hhhchHHHHhhHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHH
Q 013375 287 VAITDFDRATRQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGW 355 (444)
Q Consensus 287 ~~~~~~~~~~~~~eA~~~~~~al~~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~ 355 (444)
|++++|+..|++++ .+.|.+ ..++.++|.++..+|++++|+.+|++++++.|++. ..++
T Consensus 129 ---------g~~~~A~~~~~~Al-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (307)
T 2ifu_A 129 ---------LDLSKAVHLYQQAA-AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKC 198 (307)
T ss_dssp ---------TCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 46899999999999 888765 57889999999999999999999999999987653 2478
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc---HHHHHHHHHHHHHhCCHHHHHH
Q 013375 356 LLMARILSAQKRYEDAETILNAALDQTGKWEQ---GELLRTKAKVQLVQGQLKGAVE 409 (444)
Q Consensus 356 ~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~---~~~~~~la~~~~~~g~~~~A~~ 409 (444)
..+|.++..+|++++|+.+|++++ ..|+... ...+..++..+ ..|+.+....
T Consensus 199 ~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 199 IAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 889999999999999999999999 9983211 12233444444 5666654443
No 112
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.73 E-value=2e-17 Score=139.80 Aligned_cols=118 Identities=18% Similarity=0.115 Sum_probs=110.2
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013375 303 QALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (444)
Q Consensus 303 ~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~ 382 (444)
..|++++ .++|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++..+|++++|+.+|++++.++
T Consensus 5 ~~l~~al-~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLR-GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-ARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCT-TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHH-cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 5788899 9999999999999999999999999999999999999999 5999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375 383 GKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 383 P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
| +++.+++++|.++..+|++++|+..|++++++.|++...
T Consensus 83 p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 83 I--NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp T--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred C--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence 9 899999999999999999999999999999999976654
No 113
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=3.4e-15 Score=163.20 Aligned_cols=292 Identities=11% Similarity=0.020 Sum_probs=213.5
Q ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 013375 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRA 89 (444)
Q Consensus 10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~a 89 (444)
.+.|++.|+++++.|++++|+..|.++ + . ..++...+.++.+.|++++|+.+|..+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA---------d-D--------------~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA---------D-D--------------PSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc---------C-C--------------hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 578899999999999999999988653 0 1 135666788899999999999999998
Q ss_pred hCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013375 90 LLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSF 169 (444)
Q Consensus 90 L~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~ 169 (444)
.+. +++.. +...++. .|.+.+++++ +..+ + ..| +...+..+|.
T Consensus 1161 rk~----~~e~~--Idt~Laf--------------------aYAKl~rlee-le~f--------I-~~~-n~ad~~~iGd 1203 (1630)
T 1xi4_A 1161 RKK----ARESY--VETELIF--------------------ALAKTNRLAE-LEEF--------I-NGP-NNAHIQQVGD 1203 (1630)
T ss_pred Hhh----ccccc--ccHHHHH--------------------HHHhhcCHHH-HHHH--------H-hCC-CHHHHHHHHH
Confidence 887 21110 0111222 2233456654 3322 1 234 4456667999
Q ss_pred HHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHH
Q 013375 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAE 249 (444)
Q Consensus 170 ~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~ 249 (444)
.+...|++++|..+|.++ ..|..+|.+|..+|++++|++++++|. . +.+|...+..|.. .|++.
T Consensus 1204 ~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~--n-----~~aWkev~~acve-~~Ef~ 1267 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--S-----TRTWKEVCFACVD-GKEFR 1267 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC--C-----HHHHHHHHHHHhh-hhHHH
Confidence 999999999999999986 588999999999999999999999987 2 3566655556654 57787
Q ss_pred HHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013375 250 EGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE 329 (444)
Q Consensus 250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~ 329 (444)
.|..+... +... +.-+..++..|. +.|.+++|+..+++++ .++|.+...+..||.++.+
T Consensus 1268 LA~~cgl~-Iiv~--------~deLeeli~yYe-----------~~G~feEAI~LlE~aL-~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1268 LAQMCGLH-IVVH--------ADELEELINYYQ-----------DRGYFEELITMLEAAL-GLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHh-hhcC--------HHHHHHHHHHHH-----------HcCCHHHHHHHHHHHh-ccChhHhHHHHHHHHHHHh
Confidence 88777664 3211 122334444443 3578999999999999 9999999999999988876
Q ss_pred --cCCHHHHHHHHHHHHhhcC-----CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh------------cCCCCcHHH
Q 013375 330 --QRKLNAAHYYAKMLLKLEG-----GSNLKGWLLMARILSAQKRYEDAETILNAALDQ------------TGKWEQGEL 390 (444)
Q Consensus 330 --~g~~~~A~~~~~~al~l~P-----~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~------------~P~~~~~~~ 390 (444)
-++..++++.|...+.+.| ++ ...|..+..+|.+.|+|+.|+..+-..... .+ .|+++
T Consensus 1327 y~peklmEhlk~f~~rini~k~~r~~e~-~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv--~n~el 1403 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVNIPKVLRAAEQ-AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKV--ANVEL 1403 (1630)
T ss_pred CCHHHHHHHHHHHHHhcccchHhHHHHH-HHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhccc--ccHHH
Confidence 4688999999999999888 66 489999999999999999999554443322 44 68898
Q ss_pred HHHHHHHHHHhC
Q 013375 391 LRTKAKVQLVQG 402 (444)
Q Consensus 391 ~~~la~~~~~~g 402 (444)
++.-..-+...+
T Consensus 1404 yykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1404 YYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHhhC
Confidence 888877777655
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.72 E-value=1.2e-17 Score=160.19 Aligned_cols=208 Identities=13% Similarity=0.024 Sum_probs=167.2
Q ss_pred cCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH-CCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHH
Q 013375 174 AGDLSSLATQIEELLPGIINRKERYHILALCYYG-AGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGA 252 (444)
Q Consensus 174 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~-~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~ 252 (444)
.|++++|.+.++++.+..+.. ++. .|++++|+..|.++. . ++...|++++|+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a~--~---------------~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKAA--V---------------AFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHHH--H---------------HHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHHH--H---------------HHHHcCCHHHHH
Confidence 578889999999888765542 122 588999999999876 1 234468999999
Q ss_pred HHHHHHHHHcCCC-cchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC--C----HHHHHHHHH
Q 013375 253 TFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--D----LSILYRLSL 325 (444)
Q Consensus 253 ~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~--~----~~a~~~lg~ 325 (444)
.+|.+++++.+.. +......++..+|.+|..+ |++++|+..|++++ ++.+. + ..++.++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-----------g~~~~A~~~~~~Al-~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDL-----------QRMPEAVQYIEKAS-VMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------TCGGGGHHHHHHHH-HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHH
Confidence 9999999975422 1223356788899988764 57899999999999 88542 2 468899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc----HHHHHHHHH
Q 013375 326 EYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ----GELLRTKAK 396 (444)
Q Consensus 326 ~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~----~~~~~~la~ 396 (444)
+|.. |++++|+.+|++|+++.|+.. ..++.++|.++..+|+|++|+.+|++++++.|+... ..++..+|.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 9998 999999999999999988641 368899999999999999999999999998772111 347888999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375 397 VQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 397 ~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
++..+|++++|+..|++++ +.|...
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 9999999999999999999 877543
No 115
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=7e-18 Score=166.80 Aligned_cols=302 Identities=12% Similarity=0.024 Sum_probs=161.2
Q ss_pred HHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 013375 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (444)
Q Consensus 11 ~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL 90 (444)
+.|..+|.++.+.|++++|++.|.++-+ + .++...+..+...|++++|+.+++.++
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika~D----------~--------------~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKADD----------P--------------SSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCC----------H--------------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5788888888888888888888865311 1 133444456677888899988888887
Q ss_pred CcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013375 91 LPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFA 170 (444)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~ 170 (444)
+. .++ ..+. ..+...|.+.|+++++...+ ..| +..+|..+|..
T Consensus 89 k~----~~~--~~i~--------------------~~Li~~Y~Klg~l~e~e~f~----------~~p-n~~a~~~IGd~ 131 (449)
T 1b89_A 89 KK----ARE--SYVE--------------------TELIFALAKTNRLAELEEFI----------NGP-NNAHIQQVGDR 131 (449)
T ss_dssp ----------------------------------------------CHHHHTTTT----------TCC------------
T ss_pred Hh----Ccc--chhH--------------------HHHHHHHHHhCCHHHHHHHH----------cCC-cHHHHHHHHHH
Confidence 75 111 0011 11224566678888876542 224 44699999999
Q ss_pred HHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHH
Q 013375 171 FSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEE 250 (444)
Q Consensus 171 l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~e 250 (444)
+...|++++|..+|.++ ..|..||.++..+|++++|+.+|+++- ++..|......|.. .|+++.
T Consensus 132 ~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~-------~~~~Wk~v~~aCv~-~~ef~l 195 (449)
T 1b89_A 132 CYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVD-GKEFRL 195 (449)
T ss_dssp -----CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC-------CchhHHHHHHHHHH-cCcHHH
Confidence 99999999999999977 478899999999999999999999984 45666666666755 678888
Q ss_pred HHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 013375 251 GATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE- 329 (444)
Q Consensus 251 A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~- 329 (444)
|..+....+ . +++ -...+...|. +.|++++|+..+++++ .++|.+..++..||.+|.+
T Consensus 196 A~~~~l~L~-~---~ad-----~l~~lv~~Ye-----------k~G~~eEai~lLe~aL-~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 196 AQMCGLHIV-V---HAD-----ELEELINYYQ-----------DRGYFEELITMLEAAL-GLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHTTTTTT-T---CHH-----HHHHHHHHHH-----------HTTCHHHHHHHHHHHT-TSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH-h---CHh-----hHHHHHHHHH-----------HCCCHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHhc
Confidence 877665422 1 111 1112334443 4578999999999999 9999999999999998875
Q ss_pred -cCCHHHHHHHHHHHHhhcC-----CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh------------cCCCCcHHHH
Q 013375 330 -QRKLNAAHYYAKMLLKLEG-----GSNLKGWLLMARILSAQKRYEDAETILNAALDQ------------TGKWEQGELL 391 (444)
Q Consensus 330 -~g~~~~A~~~~~~al~l~P-----~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~------------~P~~~~~~~~ 391 (444)
.+++.++++.|...+.+.| +++ ..|..+..+|...++|+.|+...-..... .+ .|.+++
T Consensus 255 ~p~k~~ehl~~~~~~ini~k~~~~~~~~-~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv--~n~ely 331 (449)
T 1b89_A 255 KPQKMREHLELFWSRVNIPKVLRAAEQA-HLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKV--ANVELY 331 (449)
T ss_dssp CHHHHHHHHHHHSTTSCHHHHHHHHHTT-TCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHC--SSTHHH
T ss_pred CHHHHHHHHHHHHHHhcCcHHHHHHHHH-HHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhch--hHHHHH
Confidence 4689999999999999999 874 99999999999999999999877665544 55 688888
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Q 013375 392 RTKAKVQLVQGQLKGAVETYTHLL 415 (444)
Q Consensus 392 ~~la~~~~~~g~~~~A~~~~~~al 415 (444)
+.....+. ++.+.++..+..++
T Consensus 332 Ykai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 332 YRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp HHHHHHHH--HHCGGGHHHHHHHH
T ss_pred HHHHHHHH--hcCHHHHHHHHHHH
Confidence 87766666 44566677777776
No 116
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.71 E-value=2.2e-17 Score=154.77 Aligned_cols=198 Identities=13% Similarity=0.005 Sum_probs=154.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHH-------
Q 013375 135 RNNIEEAILLLMILLRKVALKRIEWDPSILDHL-------SFAFSIAGDLSSLATQIEELLPGIINRKERYHI------- 200 (444)
Q Consensus 135 ~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~l-------g~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~------- 200 (444)
.++.++|...+ ..++..+|+..++|..+ +.++...+++.+++..+++.+.+.|+...++++
T Consensus 19 ~~d~~~A~~~F-----~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 19 PMSEARSLDLF-----TEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTCHHHHHHHH-----HHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred CCCHHHHHHHH-----HHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 46788888875 56678999999999999 899999999999999999999998887666666
Q ss_pred --------------HHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc
Q 013375 201 --------------LALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGC 266 (444)
Q Consensus 201 --------------la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~ 266 (444)
+|.+|...|++++|...|..++ ...|+++ +.+..+.+++. .+++++|+.++++++. .++
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~--~~~p~~~-~~~~~a~l~~~-~~r~~dA~~~l~~a~~-~~d-- 166 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAP--VAGSEHL-VAWMKAVVYGA-AERWTDVIDQVKSAGK-WPD-- 166 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC--CTTCHHH-HHHHHHHHHHH-TTCHHHHHHHHTTGGG-CSC--
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCchH-HHHHHHHHHHH-cCCHHHHHHHHHHhhc-cCC--
Confidence 8899999999999999999999 8999888 77777766654 6788888888876655 221
Q ss_pred chhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013375 267 DQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN--MR-DLSILYRLSLEYAEQRKLNAAHYYAKML 343 (444)
Q Consensus 267 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~--P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 343 (444)
+.....+++++|.++... |++++|+..|++++ ... |. .+++++++|.++.++|+.++|...|+++
T Consensus 167 ~~~~~~a~~~LG~al~~L-----------G~~~eAl~~l~~a~-~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANL-----------ALFTEAERRLTEAN-DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHh-cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 112235677777777554 56778888888777 544 55 5567778888888888888888888888
Q ss_pred HhhcCCCChHHHHHH
Q 013375 344 LKLEGGSNLKGWLLM 358 (444)
Q Consensus 344 l~l~P~~~~~~~~~l 358 (444)
++.+|+ + .++..|
T Consensus 235 ~a~~P~-~-~~~~aL 247 (282)
T 4f3v_A 235 QTTHPE-P-KVAAAL 247 (282)
T ss_dssp HHHSCC-H-HHHHHH
T ss_pred HhcCCc-H-HHHHHH
Confidence 888777 4 655544
No 117
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.70 E-value=2.6e-16 Score=134.33 Aligned_cols=107 Identities=10% Similarity=0.103 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC-------CChH-----HHHHHHHHHHHccCHHHHHHHHHHHHhh---
Q 013375 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG-------SNLK-----GWLLMARILSAQKRYEDAETILNAALDQ--- 381 (444)
Q Consensus 317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-------~~~~-----~~~~la~~l~~~g~~~eA~~~~~~al~~--- 381 (444)
+..+.++|..+...|++++|+..|++|++++|+ + .. +|.++|.++..+|+|++|+.+|++||++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~-~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD-HAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCC-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhh-hccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 457889999999999999999999999999999 4 24 9999999999999999999999999999
Q ss_pred ----cCCCCcHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhcc
Q 013375 382 ----TGKWEQGELL----RTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFS 426 (444)
Q Consensus 382 ----~P~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~ 426 (444)
+| ++..+| +++|.++..+|++++|+.+|++++++.|++.....
T Consensus 90 ~~e~~p--d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 90 RGELNQ--DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp HCCTTS--THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred cccCCC--chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 99 999999 99999999999999999999999999998766443
No 118
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.70 E-value=8.7e-16 Score=126.01 Aligned_cols=134 Identities=22% Similarity=0.232 Sum_probs=125.3
Q ss_pred HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013375 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (444)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 351 (444)
.+++.+|.++... |++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..+++++..+|++
T Consensus 2 ~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~- 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQ-----------GDYDEAIEYYQKAL-ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS- 68 (136)
T ss_dssp HHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-
T ss_pred cHHHHHHHHHHHc-----------CcHHHHHHHHHHHH-HcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc-
Confidence 3577788877654 67899999999999 9999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 352 ~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
..+|..+|.++...|++++|+.++++++...| ++..+++.+|.++...|++++|+..|++++++.|+
T Consensus 69 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 59999999999999999999999999999999 88999999999999999999999999999988764
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.68 E-value=1.6e-16 Score=135.52 Aligned_cols=118 Identities=11% Similarity=-0.056 Sum_probs=102.9
Q ss_pred HHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 013375 254 FASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL 333 (444)
Q Consensus 254 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~ 333 (444)
.|+++++.. |+ ...+++.+|.++... |++++|+..|++++ .++|+++.+|+++|.++...|++
T Consensus 9 ~~~~al~~~-p~----~~~~~~~~g~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~ 71 (148)
T 2vgx_A 9 TIAMLNEIS-SD----TLEQLYSLAFNQYQS-----------GXYEDAHXVFQALC-VLDHYDSRFFLGLGACRQAMGQY 71 (148)
T ss_dssp SHHHHTTCC-HH----HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHcCC-Hh----hHHHHHHHHHHHHHc-----------CChHHHHHHHHHHH-HcCcccHHHHHHHHHHHHHHhhH
Confidence 456666632 21 256777888887654 67999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013375 334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (444)
Q Consensus 334 ~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~ 391 (444)
++|+..|+++++++|+++ .+|+++|.++..+|++++|+.+|++++++.| +++...
T Consensus 72 ~~A~~~~~~al~l~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~ 126 (148)
T 2vgx_A 72 DLAIHSYSYGAVMDIXEP-RFPFHAAECLLQXGELAEAESGLFLAQELIA--NXPEFX 126 (148)
T ss_dssp HHHHHHHHHHHHHSTTCT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT--TCGGGH
T ss_pred HHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CCCcch
Confidence 999999999999999995 9999999999999999999999999999999 665543
No 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.68 E-value=3e-18 Score=166.79 Aligned_cols=201 Identities=10% Similarity=-0.001 Sum_probs=161.4
Q ss_pred CCcHHHHHHHHHHHHHHH----HHhhCCCCHHHHHHHHHHHH------------hcCCHHHHHHHHHhhcCCCCCCHHHH
Q 013375 135 RNNIEEAILLLMILLRKV----ALKRIEWDPSILDHLSFAFS------------IAGDLSSLATQIEELLPGIINRKERY 198 (444)
Q Consensus 135 ~~~~~eAi~~l~~~~~~~----~l~~~p~~~~~~~~lg~~l~------------~~g~~~~A~~~~~~al~~~p~~~~~~ 198 (444)
.+.+++|+..+ +. .+...|+. +|..+|.... ..+++++|++.|++++..+|+++.+|
T Consensus 78 ~~~~e~al~~~-----~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~ 150 (336)
T 1p5q_A 78 PYGLERAIQRM-----EKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIV 150 (336)
T ss_dssp CHHHHHHHTTC-----CTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHH
T ss_pred chHHHHHHhcC-----CCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHH
Confidence 34577776643 22 34556665 5556665443 56778889999999999999999999
Q ss_pred HHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhh
Q 013375 199 HILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLG 278 (444)
Q Consensus 199 ~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg 278 (444)
+++|.++...|++++|+..|++++ .++|++... .. +++. +. ......+++++|
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al--~~~p~~~~~-----------~~--~~~~-------~~-----~~~~~~~~~nla 203 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIV--SWLEYESSF-----------SN--EEAQ-------KA-----QALRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH--HHTTTCCCC-----------CS--HHHH-------HH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH--HHhhccccC-----------Ch--HHHH-------HH-----HHHHHHHHHHHH
Confidence 999999999999999999999999 889987531 00 1111 10 012356889999
Q ss_pred hhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHH
Q 013375 279 ISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLM 358 (444)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~l 358 (444)
.++... +++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|++ ..++..+
T Consensus 204 ~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~l 270 (336)
T 1p5q_A 204 MCHLKL-----------QAFSAAIESCNKAL-ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN-KAAKTQL 270 (336)
T ss_dssp HHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHH
T ss_pred HHHHHc-----------CCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHH
Confidence 999765 67999999999999 9999999999999999999999999999999999999999 5999999
Q ss_pred HHHHHHccCHHHH-HHHHHHHHhhc
Q 013375 359 ARILSAQKRYEDA-ETILNAALDQT 382 (444)
Q Consensus 359 a~~l~~~g~~~eA-~~~~~~al~~~ 382 (444)
+.++..+|++++| ...|++.+...
T Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 271 AVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 56778777543
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.68 E-value=1.9e-15 Score=129.64 Aligned_cols=138 Identities=12% Similarity=0.023 Sum_probs=124.5
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
+..++.+|.++... |++++|+..|++++ ..+|+++.+++++|.++...|++++|+..|+++++++|++
T Consensus 13 ~~~~~~~a~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 13 AEELKTQANDYFKA-----------KDYENAIKFYSQAI-ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 56778888887654 67999999999999 9999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH--HHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT--KAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
..+|..+|.++..+|++++|+.+++++++.+| ++..++.. ++..+...|++++|+..++++.++.+....
T Consensus 81 -~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 152 (166)
T 1a17_A 81 -IKGYYRRAASNMALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI 152 (166)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccch
Confidence 59999999999999999999999999999999 78888744 555588999999999999999988875443
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.67 E-value=1.5e-15 Score=137.46 Aligned_cols=181 Identities=9% Similarity=-0.069 Sum_probs=155.2
Q ss_pred hHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhch
Q 013375 212 LVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITD 291 (444)
Q Consensus 212 ~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~ 291 (444)
.+|+..|+++. . .+++.+++.+|.++.. .+++++|+.+|+++++. .+ ..+++.+|.+|...+.
T Consensus 3 ~eA~~~~~~aa--~--~g~~~a~~~lg~~~~~-~~~~~~A~~~~~~a~~~--g~-----~~a~~~lg~~y~~~g~----- 65 (212)
T 3rjv_A 3 TEPGSQYQQQA--E--AGDRRAQYYLADTWVS-SGDYQKAEYWAQKAAAQ--GD-----GDALALLAQLKIRNPQ----- 65 (212)
T ss_dssp -CTTHHHHHHH--H--TTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHT--TC-----HHHHHHHHHHTTSSTT-----
T ss_pred chHHHHHHHHH--H--CCCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHcCCC-----
Confidence 46889999999 3 4889999988888655 68999999999999984 22 5789999999876211
Q ss_pred HHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhcC--CCChHHHHHHHHHHHH-
Q 013375 292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAE----QRKLNAAHYYAKMLLKLEG--GSNLKGWLLMARILSA- 364 (444)
Q Consensus 292 ~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P--~~~~~~~~~la~~l~~- 364 (444)
..++++|+..|++++ . ++++.++++||.+|.. .+++++|+.+|+++++..| ++ ..++++||.++..
T Consensus 66 ---~~~~~~A~~~~~~A~-~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~-~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 66 ---QADYPQARQLAEKAV-E--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA-VDAQMLLGLIYASG 138 (212)
T ss_dssp ---SCCHHHHHHHHHHHH-H--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH-HHHHHHHHHHHHHT
T ss_pred ---CCCHHHHHHHHHHHH-H--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch-HHHHHHHHHHHHcC
Confidence 126899999999998 4 6899999999999998 8999999999999999998 34 4999999999999
Q ss_pred ---ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh-C-----CHHHHHHHHHHHHHHHH
Q 013375 365 ---QKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ-G-----QLKGAVETYTHLLAALQ 419 (444)
Q Consensus 365 ---~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~l~~ 419 (444)
.+++++|+.+|++|++. | .+..+++++|.++..- | ++++|+..|+++.+.-.
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~-~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSL-S--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHT-S--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHc-C--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88999999999999998 6 5778999999999764 3 89999999999998743
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2e-15 Score=124.25 Aligned_cols=115 Identities=15% Similarity=0.075 Sum_probs=98.6
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
+..++.+|..+... |++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 4 a~~~~~~g~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 4 AEEARLEGKEYFTK-----------SDWPNAVKAYTEMI-KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 45677788777654 57889999999999 8999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc------CCCCcHHHHHHHHHHHHH
Q 013375 351 NLKGWLLMARILSAQKRYEDAETILNAALDQT------GKWEQGELLRTKAKVQLV 400 (444)
Q Consensus 351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~------P~~~~~~~~~~la~~~~~ 400 (444)
..+|..+|.++..+|++++|+..|+++++++ | ++..++..++.+...
T Consensus 72 -~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p--~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 72 -VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS--SAREIDQLYYKASQQ 124 (126)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT--THHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCch--hHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999998 8 788888877776544
No 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.67 E-value=2.1e-16 Score=133.54 Aligned_cols=114 Identities=11% Similarity=-0.069 Sum_probs=101.1
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
..+++.+|.++... |++++|+..|++++ ..+|+++.+|+.+|.++...|++++|+..|+++++++|++
T Consensus 18 ~~~~~~~a~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 18 LEQLYALGFNQYQA-----------GKWDDAQKIFQALC-MLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHH-----------ccHHHHHHHHHHHH-HhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 45667777777554 67999999999999 9999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013375 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQL 399 (444)
Q Consensus 351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~ 399 (444)
+ .+|+.+|.++..+|++++|+.+|+++++..| +++.....+..+..
T Consensus 86 ~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 86 P-RFPFHAAECHLQLGDLDGAESGFYSARALAA--AQPAHEALAARAGA 131 (142)
T ss_dssp T-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--TCGGGHHHHHHHHH
T ss_pred c-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCcchHHHHHHHHH
Confidence 6 9999999999999999999999999999999 77666555544433
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=7e-16 Score=160.17 Aligned_cols=195 Identities=10% Similarity=0.005 Sum_probs=166.1
Q ss_pred HHhcCCH-HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC----------chHHHHHHHHhhcCCCCCCChHHHHHHHH
Q 013375 171 FSIAGDL-SSLATQIEELLPGIINRKERYHILALCYYGAGE----------DLVALNLLRTLLSGSEDPKCLPALLIASK 239 (444)
Q Consensus 171 l~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~----------~~~A~~~~~~al~~~~~P~~~~a~~~~~~ 239 (444)
+...|++ ++|++.+++++.++|++..+|+..+.++...|+ +++++..+++++ ..+|++..+|...+.
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l--~~~pK~y~aW~hR~w 115 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL--RVNPKSYGTWHHRCW 115 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH--HHCTTCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHH--HhCCCCHHHHHHHHH
Confidence 4455555 688999999999999999999999999999988 788888888888 788888877766554
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHH
Q 013375 240 ICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSI 319 (444)
Q Consensus 240 ~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a 319 (444)
+.. ..++ .+++++++.+.+++ ++||.|..+
T Consensus 116 ~l~-~l~~------------------------------------------------~~~~~el~~~~k~l-~~d~~N~~a 145 (567)
T 1dce_A 116 LLS-RLPE------------------------------------------------PNWARELELCARFL-EADERNFHC 145 (567)
T ss_dssp HHH-TCSS------------------------------------------------CCHHHHHHHHHHHH-HHCTTCHHH
T ss_pred HHH-Hccc------------------------------------------------ccHHHHHHHHHHHH-hhccccccH
Confidence 432 1110 03578999999999 999999999
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHc--------------cCHHHHHHHHHHHHhhcCC
Q 013375 320 LYRLSLEYAEQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQ--------------KRYEDAETILNAALDQTGK 384 (444)
Q Consensus 320 ~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~--------------g~~~eA~~~~~~al~~~P~ 384 (444)
|++.|+++...| .++++++++.++++++|.+ ..+|+.++.++... +++++|++++++|+..+|
T Consensus 146 W~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n-~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P- 223 (567)
T 1dce_A 146 WDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP- 223 (567)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC-HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC-ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC-
Confidence 999999999999 9999999999999999999 59999999999885 678999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHHHHHh
Q 013375 385 WEQGELLRTKAKVQLVQGQLKG------------AVETYTHLLAALQV 420 (444)
Q Consensus 385 ~~~~~~~~~la~~~~~~g~~~~------------A~~~~~~al~l~~~ 420 (444)
++..+|++++.++...+++++ |+..|.+++.+.|.
T Consensus 224 -~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 224 -NDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp -SCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred -CCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 899999999999999988766 56667777776664
No 126
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.66 E-value=4.4e-16 Score=136.12 Aligned_cols=125 Identities=15% Similarity=0.148 Sum_probs=116.8
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHH-HHHccCH--HHH
Q 013375 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI-LSAQKRY--EDA 371 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~-l~~~g~~--~eA 371 (444)
.+++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..|+++++++|++ ..+|..+|.+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKI-RANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN-AELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHH-HHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhcCCcchHHH
Confidence 467899999999999 9999999999999999999999999999999999999999 5999999999 8899999 999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
+.+++++++.+| ++..+++.+|.++..+|++++|+..|++++++.|+...
T Consensus 101 ~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 101 RAMIDKALALDS--NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHhCC--CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999 89999999999999999999999999999999987654
No 127
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.7e-15 Score=124.73 Aligned_cols=105 Identities=15% Similarity=0.040 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 013375 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRT 393 (444)
Q Consensus 314 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~ 393 (444)
|.++..++.+|..+...|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+..++++++.+| ++..+++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~ 77 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NFVRAYIR 77 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CcHHHHHH
Confidence 5667899999999999999999999999999999999 59999999999999999999999999999999 89999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375 394 KAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 394 la~~~~~~g~~~~A~~~~~~al~l~~~~ 421 (444)
+|.++..+|++++|+..|++++++.|+.
T Consensus 78 lg~~~~~~~~~~~A~~~~~~al~~~p~~ 105 (126)
T 3upv_A 78 KATAQIAVKEYASALETLDAARTKDAEV 105 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999554
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.65 E-value=2.9e-16 Score=148.73 Aligned_cols=197 Identities=10% Similarity=0.011 Sum_probs=156.1
Q ss_pred CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013375 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (444)
Q Consensus 192 p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (444)
|.++.+++.+|..+...|++++|+..|++++ ..+|+++.++..+|.++. ..|++++|+..++++++..|.+ .
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~-----~ 72 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAI--TRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQS-----V 72 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTC-----H
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCC-----H
Confidence 6788999999999999999999999999999 899999999988877654 4789999999999999854433 5
Q ss_pred HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013375 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (444)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 351 (444)
.+++.+|.++... |++++|+..|++++ +++|+++..+........ +..++...........|.++
T Consensus 73 ~~~~~lg~~~~~~-----------g~~~~A~~~~~~al-~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 137 (281)
T 2c2l_A 73 KAHFFLGQCQLEM-----------ESYDEAIANLQRAY-SLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQES 137 (281)
T ss_dssp HHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhH
Confidence 7888999988764 57899999999999 999987544333332222 23334444445556677775
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHH
Q 013375 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQ-GQLKGAVETYTHLLA 416 (444)
Q Consensus 352 ~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 416 (444)
.....++.++ .|++++|+..++++++.+| ++..+...++.++... +++++|...|+++.+
T Consensus 138 -~i~~~l~~l~--~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 138 -ELHSYLTRLI--AAERERELEECQRNHEGHE--DDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp -HHHHHHHHHH--HHHHHHHHTTTSGGGTTTS--CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -HHHHHHHHHH--HHHHHHHHHHHHhhhcccc--chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777787765 6999999999999999999 8888888887777666 678888888888765
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.63 E-value=3.4e-15 Score=134.11 Aligned_cols=133 Identities=14% Similarity=0.069 Sum_probs=120.6
Q ss_pred HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013375 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (444)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 351 (444)
..++.+|.++... |++++|+..|++++ +.++.+++++|.++...|++++|+..|+++++++|++
T Consensus 7 ~~~~~~g~~~~~~-----------~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~- 70 (213)
T 1hh8_A 7 ISLWNEGVLAADK-----------KDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL- 70 (213)
T ss_dssp HHHHHHHHHHHHT-----------TCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred HHHHHHHHHHHHh-----------CCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-
Confidence 4567778777654 67999999999887 3378999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH----------------HHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013375 352 LKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG----------------ELLRTKAKVQLVQGQLKGAVETYTHLL 415 (444)
Q Consensus 352 ~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al 415 (444)
..+|.++|.++..+|++++|+..|+++++..| ++. .+++++|.++..+|++++|+..|++++
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR--GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT--TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 59999999999999999999999999999888 555 999999999999999999999999999
Q ss_pred HHHHhhh
Q 013375 416 AALQVQT 422 (444)
Q Consensus 416 ~l~~~~~ 422 (444)
++.|+..
T Consensus 149 ~~~p~~~ 155 (213)
T 1hh8_A 149 SMKSEPR 155 (213)
T ss_dssp TTCCSGG
T ss_pred HcCcccc
Confidence 9988653
No 130
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.63 E-value=3.6e-15 Score=123.66 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=82.5
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
+.++..+|.++..+ |++++|+..|++++ +++|+++.+|+++|.+|..+|++++|+..|+++++++|++
T Consensus 8 A~a~~~lG~~~~~~-----------~~~~~A~~~y~~Al-~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQ-----------KDFEKAHVHYDKAI-ELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 45677788887654 56888888888888 8888888888888888888888888888888888888875
Q ss_pred C------hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375 351 N------LKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 351 ~------~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
. +.+|..+|.++..+|++++|+.+|++++...|
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 3 14677788888888888888888888888887
No 131
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.63 E-value=1.1e-15 Score=126.81 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=96.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc-------
Q 013375 315 RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ------- 387 (444)
Q Consensus 315 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~------- 387 (444)
+.+.++.++|.++.+.|++++|+..|++|++++|++ ..+|.++|.++..+|+|++|+..++++++++| ++
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~-~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~ 82 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN-ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR--ETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc--ccchhhHHH
Confidence 446688999999999999999999999999999999 59999999999999999999999999999988 43
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375 388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 388 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~ 421 (444)
..+++++|.++..+|++++|+..|++++++.|+.
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 3588999999999999999999999999987753
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.63 E-value=1.9e-14 Score=136.63 Aligned_cols=185 Identities=13% Similarity=0.090 Sum_probs=135.9
Q ss_pred CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013375 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (444)
Q Consensus 192 p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (444)
|+....+...+..+...|++++|+..+++++ ...|........ .
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l--~~~~~~~~~~~~----------------------------------~ 115 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNEL--KKEEYHPEFQQF----------------------------------L 115 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTCCCCHHHHHH----------------------------------H
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh--ccccCChhHHHH----------------------------------H
Confidence 3445566777888888999999999999888 666654321100 1
Q ss_pred HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Q 013375 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLL- 344 (444)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al- 344 (444)
..++.+|.++... |++++|+..|++++ .+.+.. ..+++++|.+|..+|++++|+.+|++++
T Consensus 116 ~~~~~~~~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~ 183 (293)
T 2qfc_A 116 QWQYYVAAYVLKK-----------VDYEYCILELKKLL-NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHHHHHHHHHTS-----------SCHHHHHHHHHHHH-TTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-----------CCHHHHHHHHHHHH-HHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1233344444332 45778888888887 765544 5688899999999999999999999998
Q ss_pred --hhcCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC----cHHHHHHHHHHHHHhCCHHHH-HHHHHHH
Q 013375 345 --KLEGGSN---LKGWLLMARILSAQKRYEDAETILNAALDQTGKWE----QGELLRTKAKVQLVQGQLKGA-VETYTHL 414 (444)
Q Consensus 345 --~l~P~~~---~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~----~~~~~~~la~~~~~~g~~~~A-~~~~~~a 414 (444)
...|++. ..++.++|.++..+|+|++|+.+++++++..++.+ ...+++++|.++..+|++++| ...|+++
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4455531 15888999999999999999999999998765101 278889999999999999999 7779999
Q ss_pred HHHHHhhhhh
Q 013375 415 LAALQVQTKT 424 (444)
Q Consensus 415 l~l~~~~~~~ 424 (444)
+.+.....+.
T Consensus 264 l~~~~~~~~~ 273 (293)
T 2qfc_A 264 SFFFDILEMH 273 (293)
T ss_dssp HHHHHHTTCH
T ss_pred HHHHHHhCcH
Confidence 9988765543
No 133
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.63 E-value=4.7e-15 Score=128.08 Aligned_cols=114 Identities=16% Similarity=0.122 Sum_probs=104.4
Q ss_pred hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 349 (444)
.+.+++.+|.++... +++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|+
T Consensus 10 ~a~~~~~~g~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 10 ESDKLKSEGNAAMAR-----------KEYSKAIDLYTQAL-SIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 467788899888764 67999999999999 999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (444)
Q Consensus 350 ~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~ 398 (444)
+ ..+|+++|.++..+|++++|+.+|+++++++| ++..+|+.++...
T Consensus 78 ~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 78 Y-SKAWSRLGLARFDMADYKGAKEAYEKGIEAEG--NGGSDAMKRGLET 123 (164)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS--SSCCHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CchHHHHHHHHHH
Confidence 9 59999999999999999999999999999999 7877777766543
No 134
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.63 E-value=1e-14 Score=119.54 Aligned_cols=133 Identities=23% Similarity=0.291 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHH
Q 013375 196 ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANC 275 (444)
Q Consensus 196 ~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~ 275 (444)
++|+.+|.++...|++++|+..|++++ ..+|+++.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~--------------------------------------- 40 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKAL--ELDPRSAEAWYN--------------------------------------- 40 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTCHHHHHH---------------------------------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHH--HcCCcchhHHHH---------------------------------------
Confidence 456666777777777777777777766 555655443332
Q ss_pred HhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHH
Q 013375 276 LLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGW 355 (444)
Q Consensus 276 ~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 355 (444)
+|.++.. .+++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..+++++..+|++ ..+|
T Consensus 41 -~a~~~~~-----------~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~ 106 (136)
T 2fo7_A 41 -LGNAYYK-----------QGDYDEAIEYYQKAL-ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAW 106 (136)
T ss_dssp -HHHHHHH-----------HTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred -HHHHHHH-----------hcCHHHHHHHHHHHH-HHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHH
Confidence 2333222 245677777777777 7777777777788888888888888888888888887777 4777
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375 356 LLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 356 ~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
..+|.++...|++++|+.++++++..+|
T Consensus 107 ~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 107 YNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 7788888888888888888888877777
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=2.8e-16 Score=163.21 Aligned_cols=200 Identities=10% Similarity=-0.058 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 013375 138 IEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGD----------LSSLATQIEELLPGIINRKERYHILALCYYG 207 (444)
Q Consensus 138 ~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 207 (444)
.++|+..+ +.++..+|++..+|+..+.++...|+ ++++++.+++++..+|++..+|++.+.++..
T Consensus 45 ~eeal~~~-----~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 45 DESVLELT-----SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp SHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHH-----HHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35777764 66789999999999999999999998 9999999999999999999999999999999
Q ss_pred CC--CchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhh
Q 013375 208 AG--EDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQS 285 (444)
Q Consensus 208 ~g--~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~ 285 (444)
.| ++++|+..+.+++ ..+|++..+|...+.+........++++++++++|+..|.+ ..+|+++|.++....
T Consensus 120 l~~~~~~~el~~~~k~l--~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n-----~saW~~r~~ll~~l~ 192 (567)
T 1dce_A 120 LPEPNWARELELCARFL--EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-----YSSWHYRSCLLPQLH 192 (567)
T ss_dssp CSSCCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC-----HHHHHHHHHHHHHHS
T ss_pred cccccHHHHHHHHHHHH--hhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC-----ccHHHHHHHHHHhhc
Confidence 99 6699999999999 89999999999888776553338999999999999965544 579999999887642
Q ss_pred hhhhch---HHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHhhcCCC
Q 013375 286 KVAITD---FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNA------------AHYYAKMLLKLEGGS 350 (444)
Q Consensus 286 ~~~~~~---~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~------------A~~~~~~al~l~P~~ 350 (444)
...... ....+.+++|++.+.+++ .++|+|..+|++++.++...+++++ |+..|.+++.++|..
T Consensus 193 ~~~~~~~~~~~~~~~~~eel~~~~~ai-~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 193 PQPDSGPQGRLPENVLLKELELVQNAF-FTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp CCCCSSSCCSSCHHHHHHHHHHHHHHH-HHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred ccccccccccccHHHHHHHHHHHHHHH-hhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 211000 001257899999999999 9999999999999999999999777 777899999999873
No 136
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.63 E-value=6.9e-15 Score=132.05 Aligned_cols=166 Identities=10% Similarity=-0.001 Sum_probs=131.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHh
Q 013375 163 ILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICG 242 (444)
Q Consensus 163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~ 242 (444)
.++.+|.++...|++++|+..|++++ +| ++.+|+++|.++...|++++|+..|++++ ..+|+++.+++.+|.++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSI--NRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCccchHHHHHHHHHHH
Confidence 46789999999999999999999997 33 78999999999999999999999999999 899999988888777654
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013375 243 EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYR 322 (444)
Q Consensus 243 ~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~ 322 (444)
. .|++++|+.+|+++++..|.+.. ..+.. ..+ ..+|.++.++++
T Consensus 83 ~-~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~-----------------------~~~-~~~~~~~~~~~~ 126 (213)
T 1hh8_A 83 Q-TEKYDLAIKDLKEALIQLRGNQL-----------IDYKI-----------------------LGL-QFKLFACEVLYN 126 (213)
T ss_dssp H-TTCHHHHHHHHHHHHHTTTTCSE-----------EECGG-----------------------GTB-CCEEEHHHHHHH
T ss_pred H-cccHHHHHHHHHHHHHhCCCccH-----------HHHHH-----------------------hcc-ccCccchHHHHH
Confidence 4 67888888888888885544321 00111 112 466777799999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013375 323 LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (444)
Q Consensus 323 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~ 382 (444)
+|.++..+|++++|+..|+++++++|++. .++.++|+..+.+.....
T Consensus 127 l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------------~~~~~~a~~~~~~~~~~~ 173 (213)
T 1hh8_A 127 IAFMYAKKEEWKKAEEQLALATSMKSEPR-------------HSKIDKAMECVWKQKLYE 173 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSGG-------------GGHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcCcccc-------------cchHHHHHHHHHhccccc
Confidence 99999999999999999999999999863 245566666666554433
No 137
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.62 E-value=4.5e-15 Score=128.24 Aligned_cols=109 Identities=14% Similarity=-0.020 Sum_probs=104.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013375 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (444)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~ 391 (444)
.+|.++.+++.+|.++...|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+.+|+++++++| ++..+|
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~ 82 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN-PIYLSNRAAAYSASGQHEKAAEDAELATVVDP--KYSKAW 82 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHH
Confidence 457778999999999999999999999999999999999 59999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 392 ~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
+++|.++..+|++++|+..|++++++.|++..
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 99999999999999999999999999998765
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.62 E-value=5.5e-16 Score=138.40 Aligned_cols=119 Identities=13% Similarity=0.024 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHH
Q 013375 296 TRQAKALQALVSAARSTNMRDL----------------SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMA 359 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~----------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la 359 (444)
+++++|+..|++++ .+.|+++ .+++++|.++..+|++++|+..|+++++++|++ ..+++.+|
T Consensus 52 ~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg 129 (198)
T 2fbn_A 52 NEINEAIVKYKEAL-DFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN-VKALYKLG 129 (198)
T ss_dssp TCHHHHHHHHHHHH-HTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHH
T ss_pred CCHHHHHHHHHHHH-HHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc-HHHHHHHH
Confidence 34555555555555 5555555 789999999999999999999999999999998 59999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHH
Q 013375 360 RILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAV-ETYTHLLAAL 418 (444)
Q Consensus 360 ~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~l~ 418 (444)
.++..+|++++|+.+|+++++++| ++..++..++.++..+++.+++. ..|++.+...
T Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 130 VANMYFGFLEEAKENLYKAASLNP--NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999 89999999999999999988887 6666665543
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.61 E-value=9.5e-15 Score=120.16 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=111.5
Q ss_pred hhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013375 269 MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG 348 (444)
Q Consensus 269 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 348 (444)
....+++.+|.++... +++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..|+++++++|
T Consensus 14 ~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 81 (133)
T 2lni_A 14 DLALMVKNKGNECFQK-----------GDYPQAMKHYTEAI-KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP 81 (133)
T ss_dssp CHHHHHHHHHHHHHHT-----------TCSHHHHHHHHHHH-TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT
T ss_pred ccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 3467889999988664 57899999999999 99999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCC
Q 013375 349 GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQ 403 (444)
Q Consensus 349 ~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~ 403 (444)
++ ..+|..+|.++...|++++|+.+++++++.+| ++..++..++.++..+|+
T Consensus 82 ~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 82 TF-IKGYTRKAAALEAMKDYTKAMDVYQKALDLDS--SCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG--GGTHHHHHHHHHHHHHTC
T ss_pred Cc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHhcC
Confidence 98 59999999999999999999999999999999 889999999999988774
No 140
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.61 E-value=2.6e-14 Score=135.74 Aligned_cols=179 Identities=12% Similarity=0.045 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHH
Q 013375 197 RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCL 276 (444)
Q Consensus 197 ~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~ 276 (444)
.+...+..+...|++++|+..+++++ ...|.++..... ...+..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l--~~~~~~~~~~~~----------------------------------~~~~~~ 120 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNEL--KKEEYHPEFQQF----------------------------------LQWQYY 120 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH--TTCCCCHHHHHH----------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHh--ccccCChHHHHH----------------------------------HHHHHH
Confidence 34445778888999999999999999 666665542100 011222
Q ss_pred hhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---
Q 013375 277 LGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLE--- 347 (444)
Q Consensus 277 lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--- 347 (444)
+|.++... +++++|+..|++++ .+.+.. ..+++++|.+|..+|++++|+.+|++++++-
T Consensus 121 l~~~~~~~-----------~~~~~Ai~~~~~al-~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 188 (293)
T 3u3w_A 121 VAAYVLKK-----------VDYEYCILELKKLL-NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188 (293)
T ss_dssp HHHHHTTS-----------SCHHHHHHHHHHHH-HTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcc-----------cCHHHHHHHHHHHH-HHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 34433322 35677777777777 654433 2378999999999999999999999999532
Q ss_pred ----CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHH
Q 013375 348 ----GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQ-LKGAVETYTHLLAAL 418 (444)
Q Consensus 348 ----P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~----~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~l~ 418 (444)
|.. ..++.++|.++..+|+|++|+.+++++++..++. .-..+++++|.++..+|+ +++|+..|++++.+.
T Consensus 189 ~~~~~~~-~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 189 HDNEEFD-VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp SCCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ccchhHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 222 3588999999999999999999999999887521 127899999999999995 699999999999999
Q ss_pred Hhhhhh
Q 013375 419 QVQTKT 424 (444)
Q Consensus 419 ~~~~~~ 424 (444)
....+.
T Consensus 268 ~~~~~~ 273 (293)
T 3u3w_A 268 DILEMH 273 (293)
T ss_dssp HHTTCT
T ss_pred HHhCCH
Confidence 866553
No 141
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.61 E-value=4.4e-15 Score=122.05 Aligned_cols=101 Identities=12% Similarity=-0.000 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~ 398 (444)
.++.+|.++.+.|++++|+..|+++++++|++ ..+|..+|.++...|++++|+.+|+++++++| ++..+++.+|.++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence 46777777777788888888888888888877 47777788888778888888888888888877 7777777788888
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhhh
Q 013375 399 LVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 399 ~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
..+|++++|+..|++++++.|+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC------
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCC
Confidence 788888888888888777777543
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.61 E-value=1.8e-14 Score=119.74 Aligned_cols=108 Identities=13% Similarity=-0.051 Sum_probs=102.4
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013375 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (444)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~ 390 (444)
..+|.++..++.+|.++...|++++|+..|++++.++|++ ..+|.++|.++..+|++++|+..++++++.+| ++..+
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~ 79 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKA 79 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--hhHHH
Confidence 4678999999999999999999999999999999999999 59999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 391 ~~~la~~~~~~g~~~~A~~~~~~al~l~~~~ 421 (444)
++.+|.++..+|++++|+..|++++++.|++
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 9999999999999999999999999999984
No 143
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.61 E-value=6.7e-16 Score=152.67 Aligned_cols=288 Identities=14% Similarity=0.061 Sum_probs=137.8
Q ss_pred hhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChH
Q 013375 20 LQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAE 99 (444)
Q Consensus 20 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~ 99 (444)
+++.|++++|.+-++++ . .| .++..+|..+.+.|++++|+..|.++- ||.
T Consensus 13 l~~~~~ld~A~~fae~~-~---------~~--------------~vWs~La~A~l~~g~~~eAIdsfika~------D~~ 62 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC-N---------EP--------------AVWSQLAKAQLQKGMVKEAIDSYIKAD------DPS 62 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhC-C---------Ch--------------HHHHHHHHHHHHcCCHHHHHHHHHcCC------CHH
Confidence 45677888887766654 1 12 366788899999999999999997741 332
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHH
Q 013375 100 TTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSS 179 (444)
Q Consensus 100 ~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~ 179 (444)
... ..+..+...|++++|+..+.. +.+. ..++.+...++.+|.+.|++++
T Consensus 63 ~y~------------------------~V~~~ae~~g~~EeAi~yl~~-----ark~-~~~~~i~~~Li~~Y~Klg~l~e 112 (449)
T 1b89_A 63 SYM------------------------EVVQAANTSGNWEELVKYLQM-----ARKK-ARESYVETELIFALAKTNRLAE 112 (449)
T ss_dssp ----------------------------------------------------------------------------CHHH
T ss_pred HHH------------------------HHHHHHHhCCCHHHHHHHHHH-----HHHh-CccchhHHHHHHHHHHhCCHHH
Confidence 211 111234457889999986532 2232 3347788899999999999999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 013375 180 LATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRAL 259 (444)
Q Consensus 180 A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al 259 (444)
+.+.++. | +..+|..+|..+...|++++|...|.++- .+..++. |+.++|++++|++.|+++.
T Consensus 113 ~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a~----------n~~~LA~-~L~~Lg~yq~AVea~~KA~ 175 (449)
T 1b89_A 113 LEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLAS-TLVHLGEYQAAVDGARKAN 175 (449)
T ss_dssp HTTTTTC-----C-----------------CTTTHHHHHHHTT----------CHHHHHH-HHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHhh----------hHHHHHH-HHHHhccHHHHHHHHHHcC
Confidence 8887752 4 44699999999999999999999999863 2333444 5667899999999999992
Q ss_pred HHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 013375 260 ECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYY 339 (444)
Q Consensus 260 ~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 339 (444)
. ...|...+.++... |+++.|..+... + ..+|++ ...+...|.+.|++++|+..
T Consensus 176 ~----------~~~Wk~v~~aCv~~-----------~ef~lA~~~~l~-L-~~~ad~---l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 176 S----------TRTWKEVCFACVDG-----------KEFRLAQMCGLH-I-VVHADE---LEELINYYQDRGYFEELITM 229 (449)
T ss_dssp C----------HHHHHHHHHHHHHT-----------TCHHHHHHTTTT-T-TTCHHH---HHHHHHHHHHTTCHHHHHHH
T ss_pred C----------chhHHHHHHHHHHc-----------CcHHHHHHHHHH-H-HhCHhh---HHHHHHHHHHCCCHHHHHHH
Confidence 1 35677766666543 578899887775 5 566655 44688899999999999999
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHc--cCHHHHHHHHHHHHhhcCC---CCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 013375 340 AKMLLKLEGGSNLKGWLLMARILSAQ--KRYEDAETILNAALDQTGK---WEQGELLRTKAKVQLVQGQLKGAVETY 411 (444)
Q Consensus 340 ~~~al~l~P~~~~~~~~~la~~l~~~--g~~~eA~~~~~~al~~~P~---~~~~~~~~~la~~~~~~g~~~~A~~~~ 411 (444)
+++++.++|.+ ...|..+|.++.+- ++..|++..|...+.+.|- -++..+|..+..++...++++.|+...
T Consensus 230 Le~aL~le~ah-~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 230 LEAALGLERAH-MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHTTSTTCC-HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCcHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 99999999999 69999999998776 6788888888776655440 024577889999999999999988654
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.60 E-value=2.5e-14 Score=116.87 Aligned_cols=120 Identities=13% Similarity=0.029 Sum_probs=111.9
Q ss_pred hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 349 (444)
...+++.+|.++... +++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..++++++++|+
T Consensus 11 ~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 78 (131)
T 2vyi_A 11 EAERLKTEGNEQMKV-----------ENFEAAVHFYGKAI-ELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78 (131)
T ss_dssp HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence 356778888887654 67999999999999 999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCH
Q 013375 350 SNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQL 404 (444)
Q Consensus 350 ~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~ 404 (444)
+ ..+|..+|.++...|++++|+.+++++++..| ++..++..+|.++..+|++
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 Y-SKAYGRMGLALSSLNKHVEAVAYYKKALELDP--DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTTC
T ss_pred C-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHhcC
Confidence 9 59999999999999999999999999999999 8999999999999999875
No 145
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.60 E-value=5.8e-15 Score=121.30 Aligned_cols=101 Identities=17% Similarity=0.024 Sum_probs=89.1
Q ss_pred HHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh
Q 013375 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL 352 (444)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 352 (444)
.++.+|..+... |++++|+..|++++ +.+|+++.+|+.+|.++...|++++|+..|+++++++|++ .
T Consensus 19 ~~~~~g~~~~~~-----------g~~~~A~~~~~~al-~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~ 85 (121)
T 1hxi_A 19 NPMEEGLSMLKL-----------ANLAEAALAFEAVC-QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-I 85 (121)
T ss_dssp CHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H
T ss_pred hHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H
Confidence 466777777554 67999999999999 9999999999999999999999999999999999999999 5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013375 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG 388 (444)
Q Consensus 353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~ 388 (444)
.+|..+|.++...|++++|+.+++++++.+| ++.
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P--~~~ 119 (121)
T 1hxi_A 86 AVHAALAVSHTNEHNANAALASLRAWLLSQP--QYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCC
Confidence 9999999999999999999999999999999 554
No 146
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.60 E-value=6e-15 Score=125.63 Aligned_cols=94 Identities=15% Similarity=0.098 Sum_probs=87.0
Q ss_pred HHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 013375 292 FDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL----------NAAHYYAKMLLKLEGGSNLKGWLLMARI 361 (444)
Q Consensus 292 ~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~l~P~~~~~~~~~la~~ 361 (444)
..|.+++++|++.|++++ +++|+++++|+++|.++...+++ ++|+..|++|++++|++ ..+|+++|.+
T Consensus 12 ~~r~~~feeA~~~~~~Ai-~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTY-KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-HHHHHHHHHH
Confidence 356788999999999999 99999999999999999999875 59999999999999999 5999999999
Q ss_pred HHHcc-----------CHHHHHHHHHHHHhhcCCCCcHH
Q 013375 362 LSAQK-----------RYEDAETILNAALDQTGKWEQGE 389 (444)
Q Consensus 362 l~~~g-----------~~~eA~~~~~~al~~~P~~~~~~ 389 (444)
|..+| ++++|+.+|++|++++| ++..
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P--~~~~ 126 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP--DNTH 126 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT--TCHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCC--CCHH
Confidence 99885 89999999999999999 7653
No 147
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.59 E-value=5.6e-15 Score=126.06 Aligned_cols=107 Identities=15% Similarity=0.008 Sum_probs=95.3
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHH
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR-------DLS-----ILYRLSLEYAEQRKLNAAHY 338 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~-------~~~-----a~~~lg~~~~~~g~~~~A~~ 338 (444)
+..+...|..+... |++++|+..|++++ +++|+ +.. +|+++|.++..+|++++|+.
T Consensus 11 a~~~~~~G~~l~~~-----------g~~eeAi~~Y~kAL-~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~ 78 (159)
T 2hr2_A 11 AYLALSDAQRQLVA-----------GEYDEAAANCRRAM-EISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALH 78 (159)
T ss_dssp HHHHHHHHHHHHHH-----------TCHHHHHHHHHHHH-HHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHH-hhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHH
Confidence 34567788877654 67999999999999 99999 544 99999999999999999999
Q ss_pred HHHHHHhh-------cCCCChHHH----HHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHH
Q 013375 339 YAKMLLKL-------EGGSNLKGW----LLMARILSAQKRYEDAETILNAALDQTGKWEQGELLR 392 (444)
Q Consensus 339 ~~~~al~l-------~P~~~~~~~----~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~ 392 (444)
.|++||++ +|++ ..+| +++|.++..+|++++|+..|++|+++.| ++..+.-
T Consensus 79 ~~~kAL~l~n~~~e~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p--~d~~~~~ 140 (159)
T 2hr2_A 79 SADKALHYFNRRGELNQDE-GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE--ERKGETP 140 (159)
T ss_dssp HHHHHHHHHHHHCCTTSTH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HCCSCCT
T ss_pred HHHHHHHhhhccccCCCch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC--CcHHHHH
Confidence 99999999 9999 5999 9999999999999999999999999999 6544433
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.59 E-value=1.3e-14 Score=126.60 Aligned_cols=127 Identities=15% Similarity=0.105 Sum_probs=108.4
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013375 244 YPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRL 323 (444)
Q Consensus 244 ~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~l 323 (444)
..|++++|+..++++++..|.+ ..+++.+|.++... |++++|+..|++++ +++|+++.+++.+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~l 84 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQN-----SEQWALLGEYYLWQ-----------NDYSNSLLAYRQAL-QLRGENAELYAAL 84 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSC-----HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHCSCHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HcCCCCHHHHHHH
Confidence 4577888889999998865443 46788888888654 57899999999999 9999999999999
Q ss_pred HHH-HHHcCCH--HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013375 324 SLE-YAEQRKL--NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (444)
Q Consensus 324 g~~-~~~~g~~--~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~ 390 (444)
|.+ +...|++ ++|+..|+++++++|++ ..+|..+|.++..+|++++|+.+++++++.+| ++...
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~ 151 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALALDSNE-ITALMLLASDAFMQANYAQAIELWQKVMDLNS--PRINR 151 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC--TTSCH
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC--CCccH
Confidence 999 7899998 99999999999999998 59999999999999999999999999999999 55443
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.59 E-value=1.4e-15 Score=135.70 Aligned_cols=179 Identities=10% Similarity=-0.074 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 013375 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKI 240 (444)
Q Consensus 161 ~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~ 240 (444)
+....+.+......|+++++.+.++......+..+..+..+|..++..|++++|+..|++++ .+.|+++.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~---- 77 (198)
T 2fbn_A 4 SHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEAL--DFFIHTEEWDDQ---- 77 (198)
T ss_dssp ------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTTTTCTTCCCH----
T ss_pred cccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHhcccccchh----
Confidence 34455667777788889888888887777777788999999999999999999999999999 888887632100
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHH
Q 013375 241 CGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSIL 320 (444)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~ 320 (444)
......+.+ ...+++.+|.++... +++++|+..|++++ +++|+++.++
T Consensus 78 ----------~~~~~~~~~----------~~~~~~~la~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~ 125 (198)
T 2fbn_A 78 ----------ILLDKKKNI----------EISCNLNLATCYNKN-----------KDYPKAIDHASKVL-KIDKNNVKAL 125 (198)
T ss_dssp ----------HHHHHHHHH----------HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHH
T ss_pred ----------hHHHHHHHH----------HHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-HhCcccHHHH
Confidence 001111111 246788899998764 67999999999999 9999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHH-HHHHHH
Q 013375 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAE-TILNAA 378 (444)
Q Consensus 321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~-~~~~~a 378 (444)
+++|.++..+|++++|+..|+++++++|++ ..++..++.++..+++++++. ..+.+.
T Consensus 126 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 126 YKLGVANMYFGFLEEAKENLYKAASLNPNN-LDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 599999999999998888776 333333
No 150
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.58 E-value=1.9e-16 Score=160.55 Aligned_cols=159 Identities=12% Similarity=0.037 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHH
Q 013375 175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATF 254 (444)
Q Consensus 175 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~ 254 (444)
+++++|+..|++++..+|+.+.+|+++|.+++..|++++|+..|++++ .++|++.... .++..
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al--~~~p~~~~~~-------------~~~~~-- 310 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIV--SWLEMEYGLS-------------EKESK-- 310 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHTTCCSCC-------------HHHHH--
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHhcccccCC-------------hHHHH--
Confidence 345566666666666666666777777777777777777777777777 5666553210 00000
Q ss_pred HHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 013375 255 ASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLN 334 (444)
Q Consensus 255 ~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~ 334 (444)
.+ ......+|+++|.+|... +++++|+..|++++ +++|+++.+++++|.+|..+|+++
T Consensus 311 ---~~-------~~~~~~~~~nla~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~a~~~~g~a~~~~g~~~ 368 (457)
T 1kt0_A 311 ---AS-------ESFLLAAFLNLAMCYLKL-----------REYTKAVECCDKAL-GLDSANEKGLYRRGEAQLLMNEFE 368 (457)
T ss_dssp ---HH-------HHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHH
T ss_pred ---HH-------HHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHccCHH
Confidence 00 012245677777777654 56778888888888 788888888888888888888888
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH
Q 013375 335 AAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (444)
Q Consensus 335 ~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~ 373 (444)
+|+..|+++++++|++. .++..++.++..+|++++|..
T Consensus 369 ~A~~~~~~al~l~P~~~-~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 369 SAKGDFEKVLEVNPQNK-AARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888774 778888888888887777664
No 151
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.58 E-value=7.9e-14 Score=132.36 Aligned_cols=178 Identities=7% Similarity=-0.037 Sum_probs=137.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH------HHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh
Q 013375 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRK------ERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL 231 (444)
Q Consensus 158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~ 231 (444)
|.....+...+..+...|++++|++.|+++++..|... ..++.+|.++...|++++|+..|++++ ...++..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~~~~~ 149 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL--NQQLTGI 149 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH--TTCCCSS
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HHHhcCC
Confidence 44455667788899999999999999999999887755 346778999999999999999999999 6655431
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh
Q 013375 232 PALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (444)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~ 311 (444)
... ....+++.+|.+|..+ |++++|+..|++++ .
T Consensus 150 ~~~----------------------------------~~~~~~~~lg~~y~~~-----------~~~~~A~~~~~kal-~ 183 (293)
T 2qfc_A 150 DVY----------------------------------QNLYIENAIANIYAEN-----------GYLKKGIDLFEQIL-K 183 (293)
T ss_dssp CTT----------------------------------HHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-H
T ss_pred chH----------------------------------HHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-H
Confidence 100 0123566666666553 45677777777776 4
Q ss_pred h---CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHccCHHHH-HHHHHHH
Q 013375 312 T---NMRDL----SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDA-ETILNAA 378 (444)
Q Consensus 312 ~---~P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~g~~~eA-~~~~~~a 378 (444)
+ .|++. .+++++|.+|..+|++++|+.+|++++++.++.. ..++.++|.++..+|++++| ..++++|
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4 34433 5889999999999999999999999999875410 37899999999999999999 7889999
Q ss_pred HhhcC
Q 013375 379 LDQTG 383 (444)
Q Consensus 379 l~~~P 383 (444)
+.+..
T Consensus 264 l~~~~ 268 (293)
T 2qfc_A 264 SFFFD 268 (293)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97653
No 152
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.57 E-value=1.5e-14 Score=124.59 Aligned_cols=119 Identities=19% Similarity=0.137 Sum_probs=104.8
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHcCC
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST------------------NMRDLSILYRLSLEYAEQRK 332 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~------------------~P~~~~a~~~lg~~~~~~g~ 332 (444)
+..+...|..+... |++++|+..|++++ .+ +|.++.+++++|.++..+|+
T Consensus 11 a~~~~~~G~~~~~~-----------~~~~~A~~~y~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~ 78 (162)
T 3rkv_A 11 VEALRQKGNELFVQ-----------KDYKEAIDAYRDAL-TRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD 78 (162)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 45677888887654 67999999999999 99 77888999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH-HHHHHHHHHHHHhCCH
Q 013375 333 LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG-ELLRTKAKVQLVQGQL 404 (444)
Q Consensus 333 ~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~-~~~~~la~~~~~~g~~ 404 (444)
+++|+..++++++++|++ ..+|+.+|.++..+|++++|+..|+++++++| ++. .+...++.+....++.
T Consensus 79 ~~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 79 LHEAEETSSEVLKREETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRNHP--AAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 59999999999999999999999999999999 787 6666666666554433
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.57 E-value=9.5e-14 Score=114.08 Aligned_cols=123 Identities=11% Similarity=-0.047 Sum_probs=98.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh
Q 013375 190 GIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQM 269 (444)
Q Consensus 190 ~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~ 269 (444)
..|.++.+|+.+|.++...|++++|+..|++++ ..+|+++.++..+|.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~--------------------------- 61 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAI--KRNPKDAKLYSNRAACYT--------------------------- 61 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHH--TTCTTCHHHHHHHHHHHT---------------------------
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHH---------------------------
Confidence 457788889999999999999999999999999 788887766655444331
Q ss_pred hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 349 (444)
. .+++++|+..|++++ +.+|+++.+++++|.++...|++++|+..|+++++++|+
T Consensus 62 -------------~-----------~~~~~~A~~~~~~a~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 62 -------------K-----------LLEFQLALKDCEECI-QLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116 (133)
T ss_dssp -------------T-----------TTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred -------------H-----------hccHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC
Confidence 1 135678888888888 888888888888888888888899999999988888888
Q ss_pred CChHHHHHHHHHHHHccC
Q 013375 350 SNLKGWLLMARILSAQKR 367 (444)
Q Consensus 350 ~~~~~~~~la~~l~~~g~ 367 (444)
+. .++..++.++..+|+
T Consensus 117 ~~-~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 117 CK-EAADGYQRCMMAQYN 133 (133)
T ss_dssp GT-HHHHHHHHHHHHHTC
T ss_pred ch-HHHHHHHHHHHHhcC
Confidence 84 888888888877664
No 154
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.57 E-value=9.1e-14 Score=118.97 Aligned_cols=133 Identities=14% Similarity=0.048 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013375 195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN 274 (444)
Q Consensus 195 ~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~ 274 (444)
+..|+.+|.++...|++++|+..|++++ ..+|+++.++..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~-------------------------------------- 52 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAI--ELNPSNAIYYGN-------------------------------------- 52 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHSTTCHHHHHH--------------------------------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCChHHHHH--------------------------------------
Confidence 4567777777777777777777777777 666666544433
Q ss_pred HHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHH
Q 013375 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG 354 (444)
Q Consensus 275 ~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 354 (444)
+|.++.. .|++++|+..|++++ .++|+++.+++++|.++...|++++|+..|+++++++|++ ..+
T Consensus 53 --~a~~~~~-----------~~~~~~A~~~~~~a~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~ 117 (166)
T 1a17_A 53 --RSLAYLR-----------TECYGYALGDATRAI-ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDA 117 (166)
T ss_dssp --HHHHHHH-----------TTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHH
T ss_pred --HHHHHHH-----------cCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHH
Confidence 3333322 245778888888888 8888888888888888888888888888888888888887 477
Q ss_pred HHHHHH--HHHHccCHHHHHHHHHHHHhhc
Q 013375 355 WLLMAR--ILSAQKRYEDAETILNAALDQT 382 (444)
Q Consensus 355 ~~~la~--~l~~~g~~~eA~~~~~~al~~~ 382 (444)
+..++. .+...|++++|+..+.++....
T Consensus 118 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 118 KMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 754444 4778888888888888876554
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.56 E-value=3.5e-14 Score=118.02 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=105.0
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
+..++.+|.++... |++++|+..|++++ .++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 9 ~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 9 AQELKEQGNRLFVG-----------RKYPEAAACYGRAI-TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHh-----------CcHHHHHHHHHHHH-hhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 56788899888764 67999999999999 9999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC-----cHHHHHHHHHHHHHhC
Q 013375 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE-----QGELLRTKAKVQLVQG 402 (444)
Q Consensus 351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~-----~~~~~~~la~~~~~~g 402 (444)
..+|..+|.++..+|++++|+.+|+++++..| + +..++..+..+.....
T Consensus 77 -~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 77 -VKAHFFLGQCQLEMESYDEAIANLQRAYSLAK--EQRLNFGDDIPSALRIAKKKRW 130 (137)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCCCTTHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh--hHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999 5 5666666666654443
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.55 E-value=1.9e-13 Score=110.52 Aligned_cols=117 Identities=20% Similarity=0.241 Sum_probs=107.7
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
..+++.+|.++... +++++|++.|++++ ..+|+++.+++.+|.++...|++++|+..+++++.++|++
T Consensus 9 ~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 9 AEAWYNLGNAYYKQ-----------GDYDEAIEYYQKAL-ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 46778888887654 67899999999999 9999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013375 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (444)
Q Consensus 351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g 402 (444)
..+|..+|.++...|++++|+.+++++++.+| ++..++..+|.++..+|
T Consensus 77 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 77 -AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHhcc
Confidence 59999999999999999999999999999999 89999999999887765
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.55 E-value=1.6e-13 Score=109.87 Aligned_cols=113 Identities=17% Similarity=0.113 Sum_probs=103.7
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
..+++.+|.++... |++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..++++++++|++
T Consensus 4 ~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (118)
T 1elw_A 4 VNELKEKGNKALSV-----------GNIDDALQCYSEAI-KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW 71 (118)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHc-----------ccHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc
Confidence 45677788877654 67999999999999 9999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (444)
Q Consensus 351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~ 398 (444)
..+|..+|.++...|++++|+.+++++++.+| ++..++..++.+.
T Consensus 72 -~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~ 116 (118)
T 1elw_A 72 -GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA--NNPQLKEGLQNME 116 (118)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHhh
Confidence 59999999999999999999999999999999 8999999888764
No 158
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.55 E-value=4.9e-15 Score=150.16 Aligned_cols=153 Identities=12% Similarity=0.023 Sum_probs=125.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC--------
Q 013375 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD-------- 316 (444)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~-------- 316 (444)
.+++++|+..++++++..+ ..+.++..+|.++... +++++|+..|++++ +++|++
T Consensus 247 l~~~~~A~~~~~~~~~~~~-----~~a~~~~~~G~~~~~~-----------g~~~~A~~~y~~Al-~~~p~~~~~~~~~~ 309 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKL-----EQAAIVKEKGTVYFKG-----------GKYMQAVIQYGKIV-SWLEMEYGLSEKES 309 (457)
T ss_dssp EEEEECCCCGGGSCHHHHH-----HHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHTTCCSCCHHHH
T ss_pred hhhcccCcchhhcCHHHHH-----HHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHH-HHhcccccCChHHH
Confidence 3455666666666665322 1356788888887654 57889999999999 899988
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013375 317 -------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (444)
Q Consensus 317 -------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~ 389 (444)
..+++++|.++.++|++++|+..|+++++++|++ ..+|+++|.++..+|++++|+..|++|++++| ++..
T Consensus 310 ~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P--~~~~ 386 (457)
T 1kt0_A 310 KASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN-EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP--QNKA 386 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------C
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHH
Confidence 6999999999999999999999999999999999 59999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHhCCHHHHHH-HHHHHHHH
Q 013375 390 LLRTKAKVQLVQGQLKGAVE-TYTHLLAA 417 (444)
Q Consensus 390 ~~~~la~~~~~~g~~~~A~~-~~~~al~l 417 (444)
++..++.++..+|++++|.. .|++.+.-
T Consensus 387 a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998874 45555543
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.54 E-value=1.1e-14 Score=115.75 Aligned_cols=107 Identities=14% Similarity=0.118 Sum_probs=101.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCC--cHH
Q 013375 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWE--QGE 389 (444)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~--~~~ 389 (444)
++|+++.+++.+|.++...|++++|+..|+++++++|++ ..+|..+|.++..+|++++|+.+++++++..| + +..
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~ 77 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE-SKYWLMKGKALYNLERYEEAVDCYNYVINVIE--DEYNKD 77 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC--CTTCHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--ccchHH
Confidence 479999999999999999999999999999999999998 59999999999999999999999999999999 8 899
Q ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhh
Q 013375 390 LLRTKAKVQLVQ-GQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 390 ~~~~la~~~~~~-g~~~~A~~~~~~al~l~~~~ 421 (444)
+++.+|.++..+ |++++|++.+++++...|..
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999999999999 99999999999999877643
No 160
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.53 E-value=3e-15 Score=152.47 Aligned_cols=136 Identities=12% Similarity=0.005 Sum_probs=118.3
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
+.++..+|.++..+ |++++|++.|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 6 a~~~~~lg~~~~~~-----------g~~~~A~~~~~~Al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 6 AEELKTQANDYFKA-----------KDYENAIKFYSQAI-ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp HTTSSSSSSSTTTT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHh-----------CCHHHHHHHHHHHH-HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 34566677777654 67999999999999 9999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH--HHHhCCHHHHHHHHH-----------HHHHH
Q 013375 351 NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV--QLVQGQLKGAVETYT-----------HLLAA 417 (444)
Q Consensus 351 ~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~l 417 (444)
..+|.++|.++..+|++++|+..|+++++.+| ++..++..++.+ +..+|++++|++.|+ +++++
T Consensus 74 -~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~ 150 (477)
T 1wao_1 74 -IKGYYRRAASNMALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTI 150 (477)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCC
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccc
Confidence 59999999999999999999999999999999 888899999988 889999999999999 66665
Q ss_pred HHhh
Q 013375 418 LQVQ 421 (444)
Q Consensus 418 ~~~~ 421 (444)
.|+.
T Consensus 151 ~~~~ 154 (477)
T 1wao_1 151 EDEY 154 (477)
T ss_dssp CTTC
T ss_pred cccc
Confidence 5544
No 161
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.53 E-value=1.2e-14 Score=118.29 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=87.9
Q ss_pred HhhHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHH
Q 013375 295 ATRQAKALQALVSAARST---NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA 371 (444)
.|++++|+..|++++ ++ +|+++.+++++|.++..+|++++|+..|+++++++|++ ..++.++|.++..+|++++|
T Consensus 3 ~g~~~~A~~~~~~al-~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAI-ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-QALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHH-HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCHHHH
Confidence 467899999999999 99 69999999999999999999999999999999999999 59999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375 372 ETILNAALDQTGKWEQGELLRTKAKVQ 398 (444)
Q Consensus 372 ~~~~~~al~~~P~~~~~~~~~~la~~~ 398 (444)
+..+++++...| ++..+......+.
T Consensus 81 ~~~~~~al~~~p--~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 81 VELLLKIIAETS--DDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHHHHHHC--CCHHHHHTHHHHH
T ss_pred HHHHHHHHHhCC--CcHHHHHHHHHHH
Confidence 999999999999 7877654443333
No 162
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.52 E-value=9.6e-14 Score=119.54 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------cCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKL------------------EGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (444)
Q Consensus 317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------------------~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~a 378 (444)
+..+..+|..+...|++++|+..|++++.+ +|.+ ..+|.++|.++..+|+|++|+..++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN-IPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTH-HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH-HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 567899999999999999999999999999 8887 599999999999999999999999999
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375 379 LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 379 l~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
++++| ++..+|+.+|.++..+|++++|+..|++++++.|++.
T Consensus 90 l~~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 90 LKREE--TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HhcCC--cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 99999 8999999999999999999999999999999999876
No 163
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.52 E-value=1.7e-13 Score=112.45 Aligned_cols=116 Identities=14% Similarity=0.095 Sum_probs=96.9
Q ss_pred HHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375 273 ANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL---SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 273 a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 349 (444)
+++.+|.++... |++++|+..|++++ ..+|+++ .+++.+|.++...|++++|+..|++++..+|+
T Consensus 4 ~~~~~a~~~~~~-----------~~~~~A~~~~~~~~-~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (129)
T 2xev_A 4 TAYNVAFDALKN-----------GKYDDASQLFLSFL-ELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT 71 (129)
T ss_dssp CHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHh-----------CCHHHHHHHHHHHH-HHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 456667666543 67899999999999 9999998 79999999999999999999999999999999
Q ss_pred C---ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCC
Q 013375 350 S---NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQ 403 (444)
Q Consensus 350 ~---~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~ 403 (444)
+ + .+++.+|.++..+|++++|+.+|+++++..| ++..+...+..+....++
T Consensus 72 ~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 72 HDKAA-GGLLKLGLSQYGEGKNTEAQQTLQQVATQYP--GSDAARVAQERLQSIRLG 125 (129)
T ss_dssp STTHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TSHHHHHHHHHHHHHC--
T ss_pred CcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHHhh
Confidence 7 4 7799999999999999999999999999999 787777766666554443
No 164
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.51 E-value=4.2e-13 Score=127.31 Aligned_cols=170 Identities=10% Similarity=0.004 Sum_probs=119.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCCCCCCHH------HHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCCh------HH
Q 013375 166 HLSFAFSIAGDLSSLATQIEELLPGIINRKE------RYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCL------PA 233 (444)
Q Consensus 166 ~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~------~a 233 (444)
.....+...|++++|+..|++++...+..++ .++.+|.++...|++++|+..|++++ .+.++.. .+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al--~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL--NQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH--HTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHH--HHhcccccHHHHHHH
Confidence 3466788999999999999999998887766 33358999999999999999999999 5544322 24
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC
Q 013375 234 LLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN 313 (444)
Q Consensus 234 ~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~ 313 (444)
+..+|.++ ...|++++|+.+|+++++.....+ ...
T Consensus 158 ~~~lg~~y-~~~g~~~~A~~~~~~al~~~~~~~--------------------------------------------~~~ 192 (293)
T 3u3w_A 158 ENAIANIY-AENGYLKKGIDLFEQILKQLEALH--------------------------------------------DNE 192 (293)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHSS--------------------------------------------CCH
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhcc--------------------------------------------cch
Confidence 56666554 557899999999999997431100 011
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHccC-HHHHHHHHHHHHhhc
Q 013375 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKR-YEDAETILNAALDQT 382 (444)
Q Consensus 314 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~g~-~~eA~~~~~~al~~~ 382 (444)
|..+.+++++|.+|..+|++++|+.++++++++.++.. ..++.++|.++..+|+ +++|+.+|++|+.+.
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 22245566777777777777777777777776654431 2567777777777773 577777777777554
No 165
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.50 E-value=2.3e-14 Score=139.41 Aligned_cols=138 Identities=12% Similarity=0.086 Sum_probs=90.2
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcCCH
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL-----------------SILYRLSLEYAEQRKL 333 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~-----------------~a~~~lg~~~~~~g~~ 333 (444)
+..+..+|..+... +++++|+..|++++ .++|++. .+++++|.++..+|++
T Consensus 179 a~~~~~~g~~~~~~-----------g~~~~A~~~y~~Al-~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~ 246 (338)
T 2if4_A 179 ADRRKMDGNSLFKE-----------EKLEEAMQQYEMAI-AYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRY 246 (338)
T ss_dssp HHHHHHHHHHTCSS-----------SCCHHHHHHHHHHH-HHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHH-HHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 45677888887664 57899999999999 9999988 4999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH-HHHhCCHHHHHHHHH
Q 013375 334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV-QLVQGQLKGAVETYT 412 (444)
Q Consensus 334 ~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~-~~~~g~~~~A~~~~~ 412 (444)
++|+..|+++++++|++ ..+|+++|.++..+|++++|+.+|+++++++| ++..++..++.+ ....+..+++...|+
T Consensus 247 ~~A~~~~~~al~~~p~~-~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p--~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 247 DEAIGHCNIVLTEEEKN-PKALFRRGKAKAELGQMDSARDDFRKAQKYAP--DDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 59999999999999999999999999999999 899999999998 455677888999999
Q ss_pred HHHHHHHhhhh
Q 013375 413 HLLAALQVQTK 423 (444)
Q Consensus 413 ~al~l~~~~~~ 423 (444)
+++...|++..
T Consensus 324 ~~l~~~p~~~~ 334 (338)
T 2if4_A 324 GIFKGKDEGGA 334 (338)
T ss_dssp -----------
T ss_pred HhhCCCCCCCC
Confidence 99999987654
No 166
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.50 E-value=1.8e-13 Score=121.42 Aligned_cols=163 Identities=11% Similarity=-0.005 Sum_probs=119.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh------hCCCCHH
Q 013375 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS------TNMRDLS 318 (444)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~------~~P~~~~ 318 (444)
.|++++|+..++.+.. .+. ....++..+|.++... |++++|+..|++++ . ..|..+.
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~----~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~ 67 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPA----TASGARFMLGYVYAFM-----------DRFDEARASFQALQ-QQAQKSGDHTAEHR 67 (203)
T ss_dssp --CHHHHHHHHHHHHT-STT----THHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHTTCCHHHHHH
T ss_pred cccHHHHHHHHHHhcC-ChH----HHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHH-HHHHHcCCcHHHHH
Confidence 4566666664433322 221 1355667777776554 46777888888777 6 4556677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh---cCCC---ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc----H
Q 013375 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKL---EGGS---NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ----G 388 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~---~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~----~ 388 (444)
+++++|.++...|++++|+..+++++++ .|++ ...++.++|.++..+|++++|+.+++++++..++..+ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 8899999999999999999999999998 3422 1357889999999999999999999999976431112 3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 389 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
.++.++|.++..+|++++|+..+++++++.+...+.
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 183 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDS 183 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 446889999999999999999999999998876553
No 167
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.50 E-value=1.3e-14 Score=141.07 Aligned_cols=157 Identities=10% Similarity=0.051 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhh
Q 013375 192 INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMES 271 (444)
Q Consensus 192 p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~ 271 (444)
+.....|+.+|..++..|++++|+..|++++ .+.|++.. +...++.+++...+ ..
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al--~~~p~~~~---------~~~~~~~~~~~~~l--------------~~ 230 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAI--AYMGDDFM---------FQLYGKYQDMALAV--------------KN 230 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHH--HHSCHHHH---------HTCCHHHHHHHHHH--------------HT
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHhccchh---------hhhcccHHHHHHHH--------------HH
Confidence 4456789999999999999999999999999 88887642 22344554544322 13
Q ss_pred HHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013375 272 TANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (444)
Q Consensus 272 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 351 (444)
.+++++|.++... +++++|+..|++++ +++|+++.+++++|.+|..+|++++|+..|+++++++|++.
T Consensus 231 ~~~~nla~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~ 298 (338)
T 2if4_A 231 PCHLNIAACLIKL-----------KRYDEAIGHCNIVL-TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298 (338)
T ss_dssp HHHHHHHHHHHTT-----------TCCHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence 4789999999765 57899999999999 99999999999999999999999999999999999999995
Q ss_pred hHHHHHHHHHH-HHccCHHHHHHHHHHHHhhcCCCCcH
Q 013375 352 LKGWLLMARIL-SAQKRYEDAETILNAALDQTGKWEQG 388 (444)
Q Consensus 352 ~~~~~~la~~l-~~~g~~~eA~~~~~~al~~~P~~~~~ 388 (444)
.++..++.+. ...+..+++...|.+++...| ++.
T Consensus 299 -~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p--~~~ 333 (338)
T 2if4_A 299 -AIRRELRALAEQEKALYQKQKEMYKGIFKGKD--EGG 333 (338)
T ss_dssp --------------------------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CCC
Confidence 9999999884 455778889999999999999 553
No 168
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.50 E-value=5e-13 Score=108.00 Aligned_cols=110 Identities=19% Similarity=0.264 Sum_probs=100.3
Q ss_pred hhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013375 311 STNMRD-LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (444)
Q Consensus 311 ~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~ 389 (444)
..+|.+ +.+++.+|.++...|++++|+..|++++..+|++ ..+|..+|.++...|++++|+.++++++...| ++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~ 78 (125)
T 1na0_A 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAE 78 (125)
T ss_dssp -----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH
T ss_pred CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--ccHH
Confidence 467877 8899999999999999999999999999999998 59999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 390 LLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 390 ~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
+++.+|.++...|++++|+..|++++++.|+...
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 112 (125)
T 1na0_A 79 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence 9999999999999999999999999999886654
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.7e-13 Score=113.67 Aligned_cols=110 Identities=15% Similarity=0.071 Sum_probs=90.9
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc
Q 013375 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS---NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ 387 (444)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~ 387 (444)
..+|+++..++.+|..+...|++++|+..|+++++++|++ . .+|..+|.++...|++++|+.+++++++.+| ++
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~ 98 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQA-VLHRNRAACHLKLEDYDKAETEASKAIEKDG--GD 98 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--CC
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHH-HHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--cC
Confidence 4567888888888888888888888888888888888875 4 7788888888888888888888888888888 77
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 388 GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 388 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
..+++.+|.++..+|++++|+..|++++++.|++..
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV 134 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 888888888888888888888888888888776554
No 170
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.49 E-value=2.5e-13 Score=110.75 Aligned_cols=110 Identities=13% Similarity=-0.011 Sum_probs=103.7
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013375 311 STNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (444)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~ 390 (444)
..+|+++.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++...|++++|+.++++++...| ++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~ 82 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-AVYFCNRAAAYSKLGNYAGAVQDCERAICIDP--AYSKA 82 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc--cCHHH
Confidence 5667888999999999999999999999999999999998 59999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 391 LRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 391 ~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
++.+|.++...|++++|+..|++++++.|+...
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 115 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKALELDPDNET 115 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCccchH
Confidence 999999999999999999999999999886544
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.48 E-value=2.2e-13 Score=111.82 Aligned_cols=109 Identities=12% Similarity=0.092 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh--HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc---HHHH
Q 013375 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL--KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ---GELL 391 (444)
Q Consensus 317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~--~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~---~~~~ 391 (444)
+.+++.+|.++...|++++|+..|+++++.+|+++. .+++.+|.++..+|++++|+.+|+++++..| ++ ..++
T Consensus 2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~ 79 (129)
T 2xev_A 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP--THDKAAGGL 79 (129)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TSTTHHHHH
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC--CCcccHHHH
Confidence 346889999999999999999999999999999831 6999999999999999999999999999999 77 8899
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccC
Q 013375 392 RTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSS 427 (444)
Q Consensus 392 ~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 427 (444)
+.+|.++..+|++++|+..|+++++..|+.......
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a 115 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVA 115 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 999999999999999999999999999977665443
No 172
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.48 E-value=5.8e-13 Score=126.27 Aligned_cols=208 Identities=14% Similarity=0.021 Sum_probs=153.1
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCC--CChHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 013375 180 LATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP--KCLPALLIASKICGEYPDLAEEGATFASR 257 (444)
Q Consensus 180 A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P--~~~~a~~~~~~~~~~~~~~~~eA~~~~~~ 257 (444)
|+..|++.+...+.+..+++.+|.++...|++++|++.+.+++ ..+| ++.+++...+.+++. .|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i--~~~~~~~~lea~~l~vqi~L~-~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGI--DNDEAEGTTELLLLAIEVALL-NNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--TSSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccCCCcCcHHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 6788888888766677777889999999999999999999998 7776 788888777777665 6889999999998
Q ss_pred HHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHH
Q 013375 258 ALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--DLSILYRLSLEYAEQRKLNA 335 (444)
Q Consensus 258 al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~--~~~a~~~lg~~~~~~g~~~~ 335 (444)
+.+. +++..........++..++..... ..+++.+|+..|+++. ...|+ ++..+++ ++..+|++++
T Consensus 162 ~~~~-~~d~~~~~d~~l~~Laea~v~l~~-------g~~~~q~A~~~f~El~-~~~p~~~~~~lLln---~~~~~g~~~e 229 (310)
T 3mv2_B 162 YTNA-IEDTVSGDNEMILNLAESYIKFAT-------NKETATSNFYYYEELS-QTFPTWKTQLGLLN---LHLQQRNIAE 229 (310)
T ss_dssp HHHH-SCHHHHHHHHHHHHHHHHHHHHHH-------TCSTTTHHHHHHHHHH-TTSCSHHHHHHHHH---HHHHHTCHHH
T ss_pred HHhc-CccccccchHHHHHHHHHHHHHHh-------CCccHHHHHHHHHHHH-HhCCCcccHHHHHH---HHHHcCCHHH
Confidence 8774 331000001223333333222110 0136889999999998 88887 4556666 8999999999
Q ss_pred HHHHHHHHHhh----------cCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH
Q 013375 336 AHYYAKMLLKL----------EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK 405 (444)
Q Consensus 336 A~~~~~~al~l----------~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~ 405 (444)
|...+++++++ +|+++ .++.++..+...+|+ +|..+++++.+.+| +++.+.-.. .+...||
T Consensus 230 Ae~~L~~l~~~~p~~~~k~~~~p~~~-~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P--~hp~i~d~~----~k~~~Fd 300 (310)
T 3mv2_B 230 AQGIVELLLSDYYSVEQKENAVLYKP-TFLANQITLALMQGL--DTEDLTNQLVKLDH--EHAFIKHHQ----EIDAKFD 300 (310)
T ss_dssp HHHHHHHHHSHHHHTTTCHHHHSSHH-HHHHHHHHHHHHTTC--TTHHHHHHHHHTTC--CCHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHhcccccccccCCCCCH-HHHHHHHHHHHHhCh--HHHHHHHHHHHhCC--CChHHHHHH----HHHHHHH
Confidence 99999998887 58884 999888888888897 99999999999999 777654432 2334455
Q ss_pred HHHHHH
Q 013375 406 GAVETY 411 (444)
Q Consensus 406 ~A~~~~ 411 (444)
++..-|
T Consensus 301 ~~~~ky 306 (310)
T 3mv2_B 301 ELVRKY 306 (310)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 554433
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5e-13 Score=111.99 Aligned_cols=115 Identities=13% Similarity=0.034 Sum_probs=105.5
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD---LSILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 347 (444)
...++.+|..+... +++++|+..|++++ +.+|++ +.+++++|.++...|++++|+..|++++.++
T Consensus 28 ~~~~~~~a~~~~~~-----------~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 95 (148)
T 2dba_A 28 VEQLRKEGNELFKC-----------GDYGGALAAYTQAL-GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD 95 (148)
T ss_dssp HHHHHHHHHHHHTT-----------TCHHHHHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh-----------CCHHHHHHHHHHHH-HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 56778888887664 67999999999999 999998 8999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH
Q 013375 348 GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLV 400 (444)
Q Consensus 348 P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~ 400 (444)
|++ ..+|..+|.++..+|++++|+.+|+++++.+| ++..++..++.+...
T Consensus 96 ~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 96 GGD-VKALYRRSQALEKLGRLDQAVLDLQRCVSLEP--KNKVFQEALRNISGP 145 (148)
T ss_dssp SCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHCS
T ss_pred ccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHhh
Confidence 999 59999999999999999999999999999999 888988888777543
No 174
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.48 E-value=4.1e-13 Score=107.51 Aligned_cols=105 Identities=13% Similarity=0.034 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013375 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (444)
Q Consensus 316 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la 395 (444)
.+.+++.+|.++...|++++|+..|++++.++|++ ..+|..+|.++...|++++|+..++++++..| ++..+++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--ccHHHHHHHH
Confidence 46789999999999999999999999999999998 59999999999999999999999999999999 8999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 396 KVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
.++..+|++++|+..|++++++.|+...
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 107 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNPQ 107 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 9999999999999999999999886654
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.48 E-value=3.5e-15 Score=152.06 Aligned_cols=162 Identities=14% Similarity=0.059 Sum_probs=99.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013375 245 PDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLS 324 (444)
Q Consensus 245 ~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg 324 (444)
.|++++|+.+|+++++..|.+ ..+++++|.++..+ +++++|++.|++++ +++|+++.+++++|
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~-----~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al-~l~p~~~~~~~~lg 81 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSN-----AIYYGNRSLAYLRT-----------ECYGYALGDATRAI-ELDKKYIKGYYRRA 81 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HSCTTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-HhCCCCHHHHHHHH
Confidence 344444444444444432221 34555556555443 45778888888888 88888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHH--HHHccCHHHHHHHHH-----------HHHhhcCCCC-----
Q 013375 325 LEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI--LSAQKRYEDAETILN-----------AALDQTGKWE----- 386 (444)
Q Consensus 325 ~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~--l~~~g~~~eA~~~~~-----------~al~~~P~~~----- 386 (444)
.++..+|++++|++.|+++++++|++. .++..++.+ +..+|++++|+..++ ++++..|++.
T Consensus 82 ~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 160 (477)
T 1wao_1 82 ASNMALGKFRAALRDYETVVKVKPHDK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLE 160 (477)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCT-THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCG
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccc
Confidence 888888888888888888888888874 788777777 777788888888888 7777766310
Q ss_pred ----cHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHhhhhh
Q 013375 387 ----QGELLRTKAKVQLVQGQ--LKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 387 ----~~~~~~~la~~~~~~g~--~~~A~~~~~~al~l~~~~~~~ 424 (444)
....+..+...+...+. .++....+.++.++.....+.
T Consensus 161 ~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e~~~ 204 (477)
T 1wao_1 161 DGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTL 204 (477)
T ss_dssp GGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTSCSE
T ss_pred cccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccCCCe
Confidence 01111122222223333 345556788888887776653
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.45 E-value=4.3e-13 Score=131.99 Aligned_cols=125 Identities=14% Similarity=0.047 Sum_probs=115.0
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcCCHH
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARS----------------TNMRDLSILYRLSLEYAEQRKLN 334 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~----------------~~P~~~~a~~~lg~~~~~~g~~~ 334 (444)
+..+..+|..+... +++++|+..|++++ + ++|.++.+++++|.++..+|+++
T Consensus 223 a~~~~~~g~~~~~~-----------g~~~~Ai~~y~kAl-~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~ 290 (370)
T 1ihg_A 223 SEDLKNIGNTFFKS-----------QNWEMAIKKYTKVL-RYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQ 290 (370)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-HHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence 34577788877654 67999999999999 8 88999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 013375 335 AAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVET 410 (444)
Q Consensus 335 ~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~ 410 (444)
+|+..|+++++++|++ ..+|+.+|.++..+|++++|+..|++|++++| ++..++..++.++..+++.+++...
T Consensus 291 ~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P--~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 291 GAVDSCLEALEIDPSN-TKALYRRAQGWQGLKEYDQALADLKKAQEIAP--EDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCchh-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 59999999999999999999999999999999 8999999999999999988887654
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.45 E-value=9.8e-13 Score=131.06 Aligned_cols=206 Identities=9% Similarity=-0.021 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCH-----------------HHHHHHHHHHHHCCCchHHHHHHHHhhcC
Q 013375 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIINRK-----------------ERYHILALCYYGAGEDLVALNLLRTLLSG 224 (444)
Q Consensus 162 ~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~l~~~g~~~~A~~~~~~al~~ 224 (444)
.....-|..+...|++++|++.|.++++.+|... .++.++|.+|...|++++|+..|.+++
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~-- 82 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST-- 82 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--
Confidence 3445567778888999999999999998887754 357888999999999999999998888
Q ss_pred CCCCCChHHH-----HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-cchhhhHHHHHhhhhhhhhhhhhhchHHHHhhH
Q 013375 225 SEDPKCLPAL-----LIASKICGEYPDLAEEGATFASRALECLGDG-CDQMESTANCLLGISLSAQSKVAITDFDRATRQ 298 (444)
Q Consensus 225 ~~~P~~~~a~-----~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~ 298 (444)
...+....+. ....+.++...|..++|+.++++++...... .......++..+|.+|... |++
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------g~~ 151 (434)
T 4b4t_Q 83 EYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK-----------KQY 151 (434)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH-----------TCH
T ss_pred HHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc-----------cCh
Confidence 5544432221 1112233444566666666666666542211 1112233444444444332 334
Q ss_pred HHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC------hHHHHHHHHHHHHcc
Q 013375 299 AKALQALVSAARST------NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN------LKGWLLMARILSAQK 366 (444)
Q Consensus 299 ~eA~~~~~~al~~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~------~~~~~~la~~l~~~g 366 (444)
++|+..+++++ .. .|...+++..+|.++...|++++|...+++++.+.|..+ ...+..+|.++...|
T Consensus 152 ~~A~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 230 (434)
T 4b4t_Q 152 KDSLALINDLL-REFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDK 230 (434)
T ss_dssp HHHHHHHHHHH-HHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHH-HHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 45555554444 32 222233444445555555555555555555544432210 123334444444444
Q ss_pred CHHHHHHHHHHHHhh
Q 013375 367 RYEDAETILNAALDQ 381 (444)
Q Consensus 367 ~~~eA~~~~~~al~~ 381 (444)
+|++|..+|.++++.
T Consensus 231 ~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 231 DYKTAFSYFFESFES 245 (434)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 555555544444443
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.45 E-value=6.7e-13 Score=108.33 Aligned_cols=116 Identities=13% Similarity=0.175 Sum_probs=97.7
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
+.+++.+|.++... |++++|+..|++++ ..+|+++.+++++|.++...|++++|+..|++++.++|++
T Consensus 4 ~~~~~~l~~~~~~~-----------~~~~~A~~~~~~a~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 4 ALKEKELGNDAYKK-----------KDFDTALKHYDKAK-ELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 45677788777654 57899999999999 9999999999999999999999999999999999998875
Q ss_pred -------ChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC
Q 013375 351 -------NLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG 402 (444)
Q Consensus 351 -------~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g 402 (444)
. .+|..+|.++...|++++|+.+|+++++..| + ...+..++.+....+
T Consensus 72 ~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~-~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 72 REDYRQIA-KAYARIGNSYFKEEKYKDAIHFYNKSLAEHR--T-PDVLKKCQQAEKILK 126 (131)
T ss_dssp TTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--C-HHHHHHHHHHHHHHH
T ss_pred chhHHHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHHHH
Confidence 4 7889999999999999999999999999888 3 667777777665543
No 179
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.45 E-value=1.1e-12 Score=116.31 Aligned_cols=165 Identities=13% Similarity=0.011 Sum_probs=117.8
Q ss_pred HHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHH
Q 013375 171 FSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEE 250 (444)
Q Consensus 171 l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~e 250 (444)
+...|++++|.+.++......+..+.+++.+|.++...|++++|+..|++++ .+. ...+.
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~---------------~~~~~--- 61 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ--QQA---------------QKSGD--- 61 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHH---------------HTTCC---
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH--HHH---------------HHcCC---
Confidence 3456777777774444444333567777777777777777777777777777 211 01111
Q ss_pred HHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh---CCCC----HHHHHHH
Q 013375 251 GATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST---NMRD----LSILYRL 323 (444)
Q Consensus 251 A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~---~P~~----~~a~~~l 323 (444)
......++..+|.++... |++++|+..|++++ ++ .|++ ..+++++
T Consensus 62 ----------------~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~l 113 (203)
T 3gw4_A 62 ----------------HTAEHRALHQVGMVERMA-----------GNWDAARRCFLEER-ELLASLPEDPLAASANAYEV 113 (203)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHSCCCHHHHHHHHHHH
T ss_pred ----------------cHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-HHHHHcCccHHHHHHHHHHH
Confidence 112346777888887654 57899999999999 87 4433 4678999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375 324 SLEYAEQRKLNAAHYYAKMLLKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 324 g~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
|.++...|++++|+..+++++++.+... ..++.++|.++..+|++++|+.++++++++..
T Consensus 114 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 114 ATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998754321 23468999999999999999999999998765
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.45 E-value=7.2e-13 Score=112.03 Aligned_cols=140 Identities=14% Similarity=0.008 Sum_probs=118.7
Q ss_pred hhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013375 270 ESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL------SILYRLSLEYAEQRKLNAAHYYAKML 343 (444)
Q Consensus 270 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~------~a~~~lg~~~~~~g~~~~A~~~~~~a 343 (444)
...++..+|.++... +++++|+..|++++ .+.|... .++.++|.++...|++++|+..++++
T Consensus 8 ~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLL-----------GNFRDAVIAHEQRL-LIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456788888888664 57899999999999 8866543 48899999999999999999999999
Q ss_pred HhhcCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013375 344 LKLEGGSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTGKW----EQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (444)
Q Consensus 344 l~l~P~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a 414 (444)
+++.+... ..++..+|.++..+|++++|+.+++++++..++. ....++..+|.++..+|++++|+..++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99876531 3678899999999999999999999999774311 23577899999999999999999999999
Q ss_pred HHHHHhh
Q 013375 415 LAALQVQ 421 (444)
Q Consensus 415 l~l~~~~ 421 (444)
+++.++.
T Consensus 156 ~~~~~~~ 162 (164)
T 3ro3_A 156 LEISREV 162 (164)
T ss_dssp HHHHTTC
T ss_pred HHHHHHh
Confidence 9998754
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.43 E-value=7.3e-13 Score=108.08 Aligned_cols=104 Identities=12% Similarity=0.097 Sum_probs=97.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc------
Q 013375 314 MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ------ 387 (444)
Q Consensus 314 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~------ 387 (444)
|..+.+++.+|.++...|++++|+..|++++.++|++ ..++..+|.++...|++++|+.++++++...| ++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~ 77 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-MTYITNQAAVYFEKGDYNKCRELCEKAIEVGR--ENREDYRQ 77 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HSTTCHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc--ccchhHHH
Confidence 4457889999999999999999999999999999998 59999999999999999999999999999988 65
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375 388 -GELLRTKAKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 388 -~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
..+++.+|.++...|++++|+..|++++++.|+
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 899999999999999999999999999998763
No 182
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.42 E-value=1.3e-12 Score=105.49 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013375 300 KALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (444)
Q Consensus 300 eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al 379 (444)
+|+..|++++ +.+|+++.+++++|.++...|++++|+..|+++++++|++ ..+|..+|.++..+|++++|+.+|++++
T Consensus 3 ~a~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAML-AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY-SVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHH-TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5889999999 9999999999999999999999999999999999999999 5999999999999999999999999999
Q ss_pred hhcC
Q 013375 380 DQTG 383 (444)
Q Consensus 380 ~~~P 383 (444)
+..|
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 9988
No 183
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.42 E-value=3e-13 Score=115.14 Aligned_cols=93 Identities=11% Similarity=0.015 Sum_probs=86.1
Q ss_pred HHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCH----------HHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013375 328 AEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRY----------EDAETILNAALDQTGKWEQGELLRTKAKV 397 (444)
Q Consensus 328 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~----------~eA~~~~~~al~~~P~~~~~~~~~~la~~ 397 (444)
.+.+++++|++.++++++++|++ .++|.++|.++..++++ ++|+..|++||+++| ++..+|+++|.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~-aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLD-ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc--CcHHHHHHHHHH
Confidence 45678999999999999999999 59999999999999886 599999999999999 899999999999
Q ss_pred HHHhC-----------CHHHHHHHHHHHHHHHHhhhh
Q 013375 398 QLVQG-----------QLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 398 ~~~~g-----------~~~~A~~~~~~al~l~~~~~~ 423 (444)
+..+| ++++|+.+|++++++.|++..
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 99885 899999999999999997643
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.40 E-value=3.4e-13 Score=109.59 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=84.1
Q ss_pred HcCCHHHHHHHHHHHHhh---cCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH
Q 013375 329 EQRKLNAAHYYAKMLLKL---EGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK 405 (444)
Q Consensus 329 ~~g~~~~A~~~~~~al~l---~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~ 405 (444)
.+|++++|+..|++++++ +|++ ..+|.++|.++..+|++++|+.+++++++.+| ++..+++++|.++..+|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDL-AECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--NHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCHH
Confidence 368999999999999999 7988 59999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 013375 406 GAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 406 ~A~~~~~~al~l~~~~~~~ 424 (444)
+|+..|++++++.|+....
T Consensus 79 ~A~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 79 QGVELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHhCCCcHHH
Confidence 9999999999999877654
No 185
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.40 E-value=4.8e-12 Score=119.94 Aligned_cols=177 Identities=14% Similarity=-0.041 Sum_probs=142.4
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCC--CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCC--
Q 013375 153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGII--NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP-- 228 (444)
Q Consensus 153 ~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P-- 228 (444)
.+...+.+..++..+|.++...|++++|+..+.+.+..+| ++.+++..++.++..+||.+.|.+.+++.. +.+|
T Consensus 92 l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~--~~~~d~ 169 (310)
T 3mv2_B 92 LLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT--NAIEDT 169 (310)
T ss_dssp TTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHSCHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCccc
Confidence 3444456677788999999999999999999999999997 899999999999999999999999999998 7899
Q ss_pred ----CChHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHH
Q 013375 229 ----KCLPALLIASKICG-EYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQ 303 (444)
Q Consensus 229 ----~~~~a~~~~~~~~~-~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~ 303 (444)
+.+...+..+.+.+ ...+++.+|...|+++.+..|.. .....+++ ++. +.|++++|.+
T Consensus 170 ~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~---~~~~lLln---~~~-----------~~g~~~eAe~ 232 (310)
T 3mv2_B 170 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTW---KTQLGLLN---LHL-----------QQRNIAEAQG 232 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH---HHHHHHHH---HHH-----------HHTCHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc---ccHHHHHH---HHH-----------HcCCHHHHHH
Confidence 34444444454333 23458999999999988754320 01122222 443 3578999999
Q ss_pred HHHHHHHhh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Q 013375 304 ALVSAARST----------NMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN 351 (444)
Q Consensus 304 ~~~~al~~~----------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 351 (444)
.++.++ +. +|+|++++.|+..+...+|+ +|.++++++..++|+++
T Consensus 233 ~L~~l~-~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 233 IVELLL-SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHHH-SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HHHHHH-HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 999888 77 59999999999999999998 99999999999999996
No 186
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.40 E-value=9.6e-13 Score=104.37 Aligned_cols=105 Identities=10% Similarity=-0.013 Sum_probs=97.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC--ChHHH
Q 013375 157 IEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK--CLPAL 234 (444)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~--~~~a~ 234 (444)
+|+++.++..+|.++...|++++|+..|+++++.+|+++.+|+++|.++...|++++|+..|++++ ..+|+ ++.++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~ 79 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVI--NVIEDEYNKDVW 79 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTSCCTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCcccchHHHH
Confidence 588899999999999999999999999999999999999999999999999999999999999999 89999 99998
Q ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHcCC
Q 013375 235 LIASKICGEYP-DLAEEGATFASRALECLGD 264 (444)
Q Consensus 235 ~~~~~~~~~~~-~~~~eA~~~~~~al~~~~~ 264 (444)
..++.++ ... |++++|+.++++++...|+
T Consensus 80 ~~l~~~~-~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 80 AAKADAL-RYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHH-TTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHH-HHHhCCHHHHHHHHHHHhhcccC
Confidence 8887765 568 8999999999999996554
No 187
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=2.8e-11 Score=127.57 Aligned_cols=230 Identities=9% Similarity=-0.005 Sum_probs=186.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHH-HHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHH
Q 013375 178 SSLATQIEELLPGIINRKERYHILALCYYGAGEDLVAL-NLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFAS 256 (444)
Q Consensus 178 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~-~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~ 256 (444)
+.....|++++...|.+++.|+.+|..+...|+.++|. .+|++|+ ...|++...++..+.+. ...|++++|...|+
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi--~~~P~s~~Lwl~~a~~e-e~~~~~e~aR~iye 402 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ--QCIPNSAVLAFSLSEQY-ELNTKIPEIETTIL 402 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH--HHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHH-HHhCCHHHHHHHHH
Confidence 44567899999999999999999999999999999997 9999999 89999988777666654 44688999999999
Q ss_pred HHHHHcC----------CCcch-------hhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhh-CCCCHH
Q 013375 257 RALECLG----------DGCDQ-------MESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARST-NMRDLS 318 (444)
Q Consensus 257 ~al~~~~----------~~~~~-------~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~-~P~~~~ 318 (444)
++++..+ |..+. ....+|....... .+.+..+.|...|.+|+ +. .+..+.
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e-----------rR~~~l~~AR~vf~~A~-~~~~~~~~~ 470 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM-----------KRIQGLAASRKIFGKCR-RLKKLVTPD 470 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH-----------HHHHCHHHHHHHHHHHH-HTGGGSCTH
T ss_pred HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH-----------HHcCCHHHHHHHHHHHH-HhcCCCChH
Confidence 9998531 11000 0122344333332 23467899999999999 77 556678
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCC-CcHHHHHHHHH
Q 013375 319 ILYRLSLEYAEQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKW-EQGELLRTKAK 396 (444)
Q Consensus 319 a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~-~~~~~~~~la~ 396 (444)
+|...|.+..+.+ +++.|.+.|+++++..|++ ...|...+..+...|+.+.|..+|++|+...|+. ....+|.....
T Consensus 471 lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~-~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~ 549 (679)
T 4e6h_A 471 IYLENAYIEYHISKDTKTACKVLELGLKYFATD-GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIF 549 (679)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8888787777665 5999999999999999998 4999999999999999999999999999988711 25678888899
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 397 VQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 397 ~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
.....|..+.+...++++++..|+...
T Consensus 550 fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 550 FESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 999999999999999999999997644
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.34 E-value=7.6e-13 Score=105.40 Aligned_cols=95 Identities=15% Similarity=0.034 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCc------HH
Q 013375 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQ------GE 389 (444)
Q Consensus 316 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~------~~ 389 (444)
++.+++.+|.++...|++++|+..|+++++++|++ ..+|.++|.++..+|++++|+..++++++.+| ++ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN-PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS--TAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS--STTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CccHHHHHHH
Confidence 56889999999999999999999999999999999 59999999999999999999999999999999 77 88
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Q 013375 390 LLRTKAKVQLVQGQLKGAVETYTH 413 (444)
Q Consensus 390 ~~~~la~~~~~~g~~~~A~~~~~~ 413 (444)
+++.+|.++..+|++++|+..+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 999999999999988877765543
No 189
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.32 E-value=2.9e-11 Score=127.46 Aligned_cols=217 Identities=7% Similarity=-0.127 Sum_probs=177.4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCC--
Q 013375 150 RKVALKRIEWDPSILDHLSFAFSIAGDLSSLA-TQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSE-- 226 (444)
Q Consensus 150 ~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~-- 226 (444)
++.++...|.++++|...+..+...|+.++|. ..|++++...|.+...|+.++......|++++|..+|++++ ..
T Consensus 332 Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l--~~l~ 409 (679)
T 4e6h_A 332 YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI--DRIH 409 (679)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH--HHHH
Confidence 56677889999999999999999999999997 99999999999999999999999999999999999999999 43
Q ss_pred ---------CCC-----------ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhh
Q 013375 227 ---------DPK-----------CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSK 286 (444)
Q Consensus 227 ---------~P~-----------~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~ 286 (444)
.|. ...++...+....+ .+..+.|...|.++++..++.. ...|...+......
T Consensus 410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR-~~~l~~AR~vf~~A~~~~~~~~----~~lyi~~A~lE~~~-- 482 (679)
T 4e6h_A 410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR-IQGLAASRKIFGKCRRLKKLVT----PDIYLENAYIEYHI-- 482 (679)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHTGGGSC----THHHHHHHHHHHTT--
T ss_pred HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHh--
Confidence 253 23355555554433 4678999999999998523221 23333333222111
Q ss_pred hhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC--CChHHHHHHHHHHHH
Q 013375 287 VAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG--SNLKGWLLMARILSA 364 (444)
Q Consensus 287 ~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~~~~~~la~~l~~ 364 (444)
.++.+.|...|++++ +..|+++..|...+......|+.+.|...|++|+...|+ .....|.........
T Consensus 483 --------~~d~e~Ar~ife~~L-k~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 483 --------SKDTKTACKVLELGL-KYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp --------TSCCHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHH-HHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 134689999999999 999999999999999999999999999999999999884 224788888899999
Q ss_pred ccCHHHHHHHHHHHHhhcCC
Q 013375 365 QKRYEDAETILNAALDQTGK 384 (444)
Q Consensus 365 ~g~~~eA~~~~~~al~~~P~ 384 (444)
.|..+.+..+.+++++..|+
T Consensus 554 ~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 554 VGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp TCCSHHHHHHHHHHHHHSTT
T ss_pred cCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999994
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.32 E-value=8.5e-12 Score=122.71 Aligned_cols=141 Identities=10% Similarity=0.048 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013375 195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN 274 (444)
Q Consensus 195 ~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~ 274 (444)
+..|..+|..+...|++++|+..|++++ .+.|+.+. . .. ..+..+. ......++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl--~~~~~~~~----------~--~~-------~~~~~~~-----~~~~~~~~ 276 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVL--RYVEGSRA----------A--AE-------DADGAKL-----QPVALSCV 276 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHH----------H--SC-------HHHHGGG-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhhcCcc----------c--cC-------hHHHHHH-----HHHHHHHH
Confidence 4568899999999999999999999999 55443210 0 00 1111111 11235788
Q ss_pred HHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHH
Q 013375 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG 354 (444)
Q Consensus 275 ~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 354 (444)
+++|.++..+ +++++|+..+++++ +++|+++.+++++|.++..+|++++|+..|+++++++|++ ..+
T Consensus 277 ~nla~~~~~~-----------g~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~-~~~ 343 (370)
T 1ihg_A 277 LNIGACKLKM-----------SDWQGAVDSCLEAL-EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-KAI 343 (370)
T ss_dssp HHHHHHHHHT-----------TCHHHHHHHHHHHH-TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHH
T ss_pred HHHHHHHHhc-----------cCHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHH
Confidence 9999998764 67999999999999 9999999999999999999999999999999999999999 599
Q ss_pred HHHHHHHHHHccCHHHHHHH
Q 013375 355 WLLMARILSAQKRYEDAETI 374 (444)
Q Consensus 355 ~~~la~~l~~~g~~~eA~~~ 374 (444)
+..++.++..+++++++...
T Consensus 344 ~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 344 QAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988653
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.32 E-value=6.2e-12 Score=99.22 Aligned_cols=86 Identities=12% Similarity=0.095 Sum_probs=70.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013375 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (444)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~ 391 (444)
.+|+++.+++++|.++...|++++|+..|+++++++|+++ .+|..+|.++..+|++++|+..|++++++.|+..+....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV-GTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 5799999999999999999999999999999999999995 999999999999999999999999999988722233333
Q ss_pred HHHHHHH
Q 013375 392 RTKAKVQ 398 (444)
Q Consensus 392 ~~la~~~ 398 (444)
..+..++
T Consensus 81 ~~l~~~l 87 (100)
T 3ma5_A 81 SELQDAK 87 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.31 E-value=1.8e-11 Score=93.66 Aligned_cols=88 Identities=19% Similarity=0.285 Sum_probs=80.7
Q ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHH
Q 013375 312 TNM-RDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGEL 390 (444)
Q Consensus 312 ~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~ 390 (444)
++| +++.+++.+|.++...|++++|+..|+++++++|++ ..+|..+|.++...|++++|+.+++++++.+| ++..+
T Consensus 3 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~ 79 (91)
T 1na3_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEA 79 (91)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH
T ss_pred CcccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCHHH
Confidence 344 467899999999999999999999999999999999 59999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHhC
Q 013375 391 LRTKAKVQLVQG 402 (444)
Q Consensus 391 ~~~la~~~~~~g 402 (444)
+.++|.++..+|
T Consensus 80 ~~~l~~~~~~~g 91 (91)
T 1na3_A 80 KQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999988765
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.26 E-value=5.4e-11 Score=95.80 Aligned_cols=87 Identities=20% Similarity=0.158 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013375 334 NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTH 413 (444)
Q Consensus 334 ~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 413 (444)
++|+..|+++++++|++ ..+|..+|.++...|++++|+.+|+++++.+| ++..+|+++|.++..+|++++|+..|++
T Consensus 2 ~~a~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQGTDN-MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--TYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTTCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36899999999999999 59999999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHHhhhh
Q 013375 414 LLAALQVQTK 423 (444)
Q Consensus 414 al~l~~~~~~ 423 (444)
++++.|+..+
T Consensus 79 al~~~~~~~~ 88 (115)
T 2kat_A 79 GLAAAQSRGD 88 (115)
T ss_dssp HHHHHHHHTC
T ss_pred HHHhcccccc
Confidence 9999997654
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.6e-10 Score=114.98 Aligned_cols=227 Identities=13% Similarity=0.016 Sum_probs=156.8
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhC
Q 013375 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALL 91 (444)
Q Consensus 12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~ 91 (444)
+....|..+.+.|+|++|++.|.++++..+..... ..............+.++..+|.+|...|++++|+..|+++++
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSA--AAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSB--SSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchh--HHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999999764321100 0000011122334678899999999999999999999999998
Q ss_pred cCCCCChHHH-HHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHH-HHhhCCCCHHHHHHHHH
Q 013375 92 PCWNLDAETT-AKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKV-ALKRIEWDPSILDHLSF 169 (444)
Q Consensus 92 ~~~~~~~~~~-~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~-~l~~~p~~~~~~~~lg~ 169 (444)
..+....... ..+...++ .++...|.+++|+..+..++.-. -....+.-..++..+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~--------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 143 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIE--------------------KFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLAT 143 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHH--------------------HHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHH--------------------HHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 7211111111 11111122 23445678999998775442111 11222334568899999
Q ss_pred HHHhcCCHHHHHHHHHhhcCC------CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC---Ch--H-HHHHH
Q 013375 170 AFSIAGDLSSLATQIEELLPG------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK---CL--P-ALLIA 237 (444)
Q Consensus 170 ~l~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~---~~--~-a~~~~ 237 (444)
++...|++++|+..+++++.. .|...+++..+|.+|...|++++|...|++++ ...|. .+ . .....
T Consensus 144 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~ 221 (434)
T 4b4t_Q 144 LHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR--TAANSIYCPTQTVAELDLM 221 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHSCCCHHHHHHHHHH
T ss_pred HHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH--HHhhcCCCchHHHHHHHHH
Confidence 999999999999999988754 45567899999999999999999999999998 44432 21 1 22333
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHc
Q 013375 238 SKICGEYPDLAEEGATFASRALECL 262 (444)
Q Consensus 238 ~~~~~~~~~~~~eA~~~~~~al~~~ 262 (444)
.+..+...+++++|..+|.++++..
T Consensus 222 ~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 222 SGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 4455677899999999999999854
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.24 E-value=3.8e-12 Score=101.28 Aligned_cols=95 Identities=9% Similarity=-0.059 Sum_probs=85.8
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
..+++.+|.++... |++++|+..|++++ +++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 4 ~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQ-----------GLYREAVHCYDQLI-TAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 46788899888765 67999999999999 9999999999999999999999999999999999999997
Q ss_pred ------ChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375 351 ------NLKGWLLMARILSAQKRYEDAETILNAA 378 (444)
Q Consensus 351 ------~~~~~~~la~~l~~~g~~~eA~~~~~~a 378 (444)
. .++..+|.++...|++++|+..+++.
T Consensus 72 ~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 72 EHVAIRS-KLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp TSHHHHH-HHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred cHHHHHH-HHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 5 78999999999999998887766543
No 196
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.23 E-value=9e-11 Score=98.86 Aligned_cols=141 Identities=13% Similarity=-0.009 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013375 195 KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN 274 (444)
Q Consensus 195 ~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~ 274 (444)
..+++.+|.++...|++++|+..|++++ ...|+.. +......++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al--~~~~~~~----------------------------------~~~~~~~~~ 52 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRL--LIAKEFG----------------------------------DKAAERIAY 52 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHT----------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHhC----------------------------------CchHHHHHH
Confidence 4567777777777777777777777777 3322100 011123466
Q ss_pred HHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Q 013375 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRD------LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG 348 (444)
Q Consensus 275 ~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 348 (444)
..+|.++... |++++|+..|++++ .+.+.. ..+++++|.++...|++++|+..+++++++.+
T Consensus 53 ~~l~~~~~~~-----------g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 53 SNLGNAYIFL-----------GEFETASEYYKKTL-LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp HHHHHHHHHT-----------TCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-----------CCHHHHHHHHHHHH-HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 7777777654 56888888888888 776543 56889999999999999999999999998754
Q ss_pred CCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375 349 GSN-----LKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 349 ~~~-----~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
... ..++..+|.++..+|++++|+.+++++++...
T Consensus 121 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 121 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 321 35788999999999999999999999998865
No 197
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.21 E-value=3.4e-11 Score=94.04 Aligned_cols=94 Identities=12% Similarity=0.093 Sum_probs=78.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChH-HHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375 320 LYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLK-GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQ 398 (444)
Q Consensus 320 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~-~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~ 398 (444)
.+.+|.++...|++++|+..|+++++++|++ .. +|..+|.++..+|++++|+.+|+++++.+| ++..++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~----- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP--DSPALQAR----- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSTHHHHH-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHHHH-----
Confidence 3577888888999999999999999999988 48 899999999999999999999999999999 77777654
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhhhhh
Q 013375 399 LVQGQLKGAVETYTHLLAALQVQTKT 424 (444)
Q Consensus 399 ~~~g~~~~A~~~~~~al~l~~~~~~~ 424 (444)
+.+.+++..|++++.+.|++...
T Consensus 75 ---~~~~~a~~~~~~~~~~~p~~~~~ 97 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDMYNQLEHHHH 97 (99)
T ss_dssp ---HHHHHHHHHHCCTTHHHHCCSSC
T ss_pred ---HHHHHHHHHHHHHhccCcccccC
Confidence 56788888888888888866543
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.17 E-value=7.1e-11 Score=93.04 Aligned_cols=77 Identities=8% Similarity=0.001 Sum_probs=70.1
Q ss_pred hcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhc
Q 013375 346 LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTF 425 (444)
Q Consensus 346 l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 425 (444)
.+|++ ..+|+.+|.++..+|++++|+.+|+++++.+| ++..+|+++|.++..+|++++|+..|++++++.+...+..
T Consensus 2 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 78 (100)
T 3ma5_A 2 EDPED-PFTRYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK 78 (100)
T ss_dssp ---CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred CCccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence 47998 59999999999999999999999999999999 8999999999999999999999999999999998776543
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.14 E-value=4.7e-10 Score=85.56 Aligned_cols=83 Identities=18% Similarity=0.144 Sum_probs=76.2
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
..+++.+|.++... +++++|+..|++++ +.+|+++.+++++|.++...|++++|+..|+++++++|++
T Consensus 9 ~~~~~~la~~~~~~-----------~~~~~A~~~~~~a~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 9 AEAWYNLGNAYYKQ-----------GDYDEAIEYYQKAL-ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHHT-----------TCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHc-----------cCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 56788899888654 67999999999999 9999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcc
Q 013375 351 NLKGWLLMARILSAQK 366 (444)
Q Consensus 351 ~~~~~~~la~~l~~~g 366 (444)
..++.++|.++..+|
T Consensus 77 -~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 77 -AEAKQNLGNAKQKQG 91 (91)
T ss_dssp -HHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHhcC
Confidence 599999999987664
No 200
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.09 E-value=2.1e-10 Score=89.45 Aligned_cols=79 Identities=18% Similarity=0.040 Sum_probs=73.5
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH
Q 013375 295 ATRQAKALQALVSAARSTNMRDLS-ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~ 373 (444)
.|++++|+..|++++ +.+|+++. +++++|.++..+|++++|+..|+++++++|++. .++.. +.+.+|+.
T Consensus 13 ~~~~~~A~~~~~~al-~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~--------~~~~~a~~ 82 (99)
T 2kc7_A 13 QGDIENALQALEEFL-QTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP-ALQAR--------KMVMDILN 82 (99)
T ss_dssp HTCHHHHHHHHHHHH-HHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-HHHHH--------HHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-HHHHH--------HHHHHHHH
Confidence 467999999999999 99999999 999999999999999999999999999999995 87754 78889999
Q ss_pred HHHHHHhhcC
Q 013375 374 ILNAALDQTG 383 (444)
Q Consensus 374 ~~~~al~~~P 383 (444)
.|++++..+|
T Consensus 83 ~~~~~~~~~p 92 (99)
T 2kc7_A 83 FYNKDMYNQL 92 (99)
T ss_dssp HHCCTTHHHH
T ss_pred HHHHHhccCc
Confidence 9999999888
No 201
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.09 E-value=2e-09 Score=99.74 Aligned_cols=112 Identities=14% Similarity=0.052 Sum_probs=88.9
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHH
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR--DLSILYRLSLEYAEQ-----RKLNAAHYYAKML 343 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~--~~~a~~~lg~~~~~~-----g~~~~A~~~~~~a 343 (444)
..+++-.|+++..-......+....+...+|...+++++ ++||+ +..+|..||.+|... |+.++|..+|++|
T Consensus 152 ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAl-eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 152 VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERAC-DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHH-HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHH-HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 455555665554321110011112346789999999999 99999 788999999999995 9999999999999
Q ss_pred HhhcCCCChHHHHHHHHHHHHc-cCHHHHHHHHHHHHhhcC
Q 013375 344 LKLEGGSNLKGWLLMARILSAQ-KRYEDAETILNAALDQTG 383 (444)
Q Consensus 344 l~l~P~~~~~~~~~la~~l~~~-g~~~eA~~~~~~al~~~P 383 (444)
++++|+.....++..|..+... |++++|..++++|+...|
T Consensus 231 L~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 231 TRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred HHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 9999975249999999999885 999999999999999888
No 202
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.08 E-value=2.2e-09 Score=103.53 Aligned_cols=122 Identities=11% Similarity=-0.017 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---C-----CHHHHHHHHH--HHHhhcCCCChHHHHHHHHHHHHc
Q 013375 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQ---R-----KLNAAHYYAK--MLLKLEGGSNLKGWLLMARILSAQ 365 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~---g-----~~~~A~~~~~--~al~l~P~~~~~~~~~la~~l~~~ 365 (444)
..+.+|+.+|++|+ +++|+++.++-.++.++... + ........++ .++.++|.+ ..++..++.++...
T Consensus 213 ~~~~~A~~l~e~Al-~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~-a~~~~alal~~l~~ 290 (372)
T 3ly7_A 213 KSLNRASELLGEIV-QSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL-SIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcC-HHHHHHHHHHHHhC
Confidence 35789999999999 99999999999988888531 1 1111111222 234678888 49999999999999
Q ss_pred cCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375 366 KRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 366 g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
|++++|+..+++|+.++| +...|..+|.++...|++++|++.|++|+.+.|...
T Consensus 291 gd~d~A~~~l~rAl~Ln~---s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEM---SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CCHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 999999999999999998 467889999999999999999999999999999664
No 203
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.05 E-value=9.6e-07 Score=89.90 Aligned_cols=212 Identities=8% Similarity=-0.054 Sum_probs=157.9
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHH
Q 013375 177 LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFAS 256 (444)
Q Consensus 177 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~ 256 (444)
.+.....|++++...|..+..|+.++..+...|+.++|..+|++|+ .. |.+...++..+.. ...+ +. ++
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi--~~-P~~~~l~~~y~~~--~e~~---~~---~~ 263 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI--EM-SDGMFLSLYYGLV--MDEE---AV---YG 263 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HH-CCSSHHHHHHHHH--TTCT---HH---HH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hC-CCcHHHHHHHHhh--cchh---HH---HH
Confidence 3456789999999999999999999999999999999999999999 67 9987766543332 1111 11 33
Q ss_pred HHHHHcC--CC------cchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013375 257 RALECLG--DG------CDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYA 328 (444)
Q Consensus 257 ~al~~~~--~~------~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~ 328 (444)
++.+... .. ........|....... .+.+..+.|...|+++. . .+....+|...|.+..
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~-----------~r~~~~~~AR~i~~~A~-~-~~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYV-----------LKKRGLELFRKLFIELG-N-EGVGPHVFIYCAFIEY 330 (493)
T ss_dssp HHHHHTC----------CHHHHHHHHHHHHHHH-----------HHHHCHHHHHHHHHHHT-T-SCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhccchhhhhcccccHHHHHHHHHHH-----------HHcCCHHHHHHHHHHhh-C-CCCChHHHHHHHHHHH
Confidence 3333210 00 0000112233322222 23456899999999993 3 3346777777776666
Q ss_pred HcC-CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHH
Q 013375 329 EQR-KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGA 407 (444)
Q Consensus 329 ~~g-~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A 407 (444)
..+ +.+.|...|+++++..|+.+ ..|...+..+...|+.+.|...|+++ + ....+|..........|+.+.+
T Consensus 331 ~~~~d~~~ar~ife~al~~~~~~~-~~~~~yid~e~~~~~~~~aR~l~er~----~--k~~~lw~~~~~fE~~~G~~~~~ 403 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKHPDST-LLKEEFFLFLLRIGDEENARALFKRL----E--KTSRMWDSMIEYEFMVGSMELF 403 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHS----C--CBHHHHHHHHHHHHHHSCHHHH
T ss_pred HHCCChHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH----H--HHHHHHHHHHHHHHHCCCHHHH
Confidence 655 69999999999999999985 88888888889999999999999998 4 5678888888888999999999
Q ss_pred HHHHHHHHHHHH
Q 013375 408 VETYTHLLAALQ 419 (444)
Q Consensus 408 ~~~~~~al~l~~ 419 (444)
...+++++....
T Consensus 404 r~v~~~~~~~~~ 415 (493)
T 2uy1_A 404 RELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999998665
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.03 E-value=6.4e-10 Score=112.94 Aligned_cols=147 Identities=13% Similarity=0.001 Sum_probs=113.3
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q 013375 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRR 88 (444)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~ 88 (444)
.+.....++..+..+|+|++|+..|+++|++.++.+..+.|. +...+..+|.+|..+|++++|+.+|++
T Consensus 308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~-----------~a~~~~nLa~~y~~~g~~~eA~~~~~~ 376 (490)
T 3n71_A 308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLY-----------VLRLLSIASEVLSYLQAYEEASHYARR 376 (490)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHH-----------HHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 445566788889999999999999999999987765443332 567889999999999999999999999
Q ss_pred HhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013375 89 ALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLMILLRKVALKRIEWDPSILDHLS 168 (444)
Q Consensus 89 aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg 168 (444)
+|.+ - ...++ ..+|+-...+++||
T Consensus 377 aL~i----~-------~~~lG---------------------------------------------~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 377 MVDG----Y-------MKLYH---------------------------------------------HNNAQLGMAVMRAG 400 (490)
T ss_dssp HHHH----H-------HHHSC---------------------------------------------TTCHHHHHHHHHHH
T ss_pred HHHH----H-------HHHcC---------------------------------------------CCCHHHHHHHHHHH
Confidence 9987 0 00000 11233334678999
Q ss_pred HHHHhcCCHHHHHHHHHhhcCC-----CCCC---HHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013375 169 FAFSIAGDLSSLATQIEELLPG-----IINR---KERYHILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 169 ~~l~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~l~~~g~~~~A~~~~~~al 222 (444)
.+|..+|++++|+..|++|+++ .|++ .+...+|+.++..+|++++|+..|+++.
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999854 4454 4556678888888888888888888876
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.01 E-value=8.3e-09 Score=99.51 Aligned_cols=153 Identities=10% Similarity=-0.007 Sum_probs=109.4
Q ss_pred CCCCCCHHHHHH--HHHHHHHCCC---chHHHHHHHHhhcCCCCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Q 013375 189 PGIINRKERYHI--LALCYYGAGE---DLVALNLLRTLLSGSEDPKCLPALLIASKICGEYPDLAEEGATFASRALECLG 263 (444)
Q Consensus 189 ~~~p~~~~~~~~--la~~l~~~g~---~~~A~~~~~~al~~~~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~ 263 (444)
..-|.++++|-. .|..++..+. +.+|+.+|++|+ +++|++..++..++..+.. +....
T Consensus 188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al--~lDP~~a~A~A~la~a~~~---------------~~~~~ 250 (372)
T 3ly7_A 188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIV--QSSPEFTYARAEKALVDIV---------------RHSQH 250 (372)
T ss_dssp HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHH---------------HHHHS
T ss_pred ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHH---------------HhccC
Confidence 334566555433 4666666544 467888888888 8888888887654433210 00011
Q ss_pred CCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013375 264 DGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKML 343 (444)
Q Consensus 264 ~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 343 (444)
+... ........|+... .++ ..+|.++.++..+|.++...|++++|+..+++|
T Consensus 251 ~~~~-------------------------~~~~~l~~a~~a~-~a~-~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rA 303 (372)
T 3ly7_A 251 PLDE-------------------------KQLAALNTEIDNI-VTL-PELNNLSIIYQIKAVSALVKGKTDESYQAINTG 303 (372)
T ss_dssp CCCH-------------------------HHHHHHHHHHHHH-HTC-GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCch-------------------------hhHHHHHHHHHHH-Hhc-ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1100 0001123344422 466 788999999999999999999999999999999
Q ss_pred HhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHH
Q 013375 344 LKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGE 389 (444)
Q Consensus 344 l~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~ 389 (444)
++++|+ +.+|..+|.++.-.|++++|++.|++|+.++| ....
T Consensus 304 l~Ln~s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P--~~~t 345 (372)
T 3ly7_A 304 IDLEMS--WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP--GANT 345 (372)
T ss_dssp HHHCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC--SHHH
T ss_pred HhcCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CcCh
Confidence 999985 58999999999999999999999999999999 5543
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.01 E-value=8.5e-09 Score=86.24 Aligned_cols=110 Identities=20% Similarity=0.086 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----ccCHHHH
Q 013375 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDA 371 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~----~g~~~eA 371 (444)
+++++|+..|+++. +..+.+ +. ||.+|...+.+++|++.|+++.+. ++ ..+++++|.++.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa-~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~-~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKAC-ELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NS-GNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHH-HTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHH-cCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CC-HHHHHHHHHHHHcCCCCCccHHHH
Confidence 46899999999999 887444 44 999999999999999999999887 56 5999999999998 8999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 013375 372 ETILNAALDQTGKWEQGELLRTKAKVQLV----QGQLKGAVETYTHLLAA 417 (444)
Q Consensus 372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l 417 (444)
+.+|++|.+. .++.+++++|.++.. .+++++|+..|+++.+.
T Consensus 81 ~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9999999976 478999999999999 99999999999999876
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.01 E-value=8.7e-09 Score=86.16 Aligned_cols=120 Identities=17% Similarity=0.075 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013375 246 DLAEEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDLSILYRLSL 325 (444)
Q Consensus 246 ~~~~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~ 325 (444)
+++++|+.+|+++.+.-++ .+. +|.+|... ...++|+..|+++. +. +++.++++||.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-------~a~--lg~~y~~g-----------~~~~~A~~~~~~Aa-~~--g~~~a~~~Lg~ 65 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-------FGC--LSLVSNSQ-----------INKQKLFQYLSKAC-EL--NSGNGCRFLGD 65 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-------THH--HHHHTCTT-----------SCHHHHHHHHHHHH-HT--TCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH-------hhh--HHHHHHcC-----------CCHHHHHHHHHHHH-cC--CCHHHHHHHHH
Confidence 4678999999999985322 244 88887653 34567999999999 76 89999999999
Q ss_pred HHHH----cCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 013375 326 EYAE----QRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSA----QKRYEDAETILNAALDQTGKWEQGELLRTKA 395 (444)
Q Consensus 326 ~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~----~g~~~eA~~~~~~al~~~P~~~~~~~~~~la 395 (444)
+|.. .+++++|+..|++|.+. .+ ..++++||.++.. .+++++|+.+|++|.+.. +..+..+++
T Consensus 66 ~y~~G~g~~~d~~~A~~~~~~Aa~~--g~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~A~~~l~ 136 (138)
T 1klx_A 66 FYENGKYVKKDLRKAAQYYSKACGL--ND-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG----SEDACGILN 136 (138)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHC-
T ss_pred HHHcCCCCCccHHHHHHHHHHHHcC--CC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHh
Confidence 9999 89999999999999886 56 4999999999999 899999999999999874 445555554
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.00 E-value=2.3e-09 Score=99.37 Aligned_cols=114 Identities=17% Similarity=0.114 Sum_probs=98.7
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHhhcCC--CChHHHHHHHHHHHHc-----c
Q 013375 305 LVSAARSTNMRDLSILYRLSLEYAE---Q--R------KLNAAHYYAKMLLKLEGG--SNLKGWLLMARILSAQ-----K 366 (444)
Q Consensus 305 ~~~al~~~~P~~~~a~~~lg~~~~~---~--g------~~~~A~~~~~~al~l~P~--~~~~~~~~la~~l~~~-----g 366 (444)
+.+++...+|+++++++..|.+... . | ...+|...+++|++++|+ + ..+|..+|.+|... |
T Consensus 140 ~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~-GsA~~~LG~lY~~vPp~~gG 218 (301)
T 3u64_A 140 LHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQE-GAVWNVLTKFYAAAPESFGG 218 (301)
T ss_dssp HHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHH-HHHHHHHHHHHHHSCTTTTC
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCccc-CHHHHHHHHHHHhCCCccCC
Confidence 3444448899999999999888754 1 2 357899999999999999 5 36999999999995 9
Q ss_pred CHHHHHHHHHHHHhhcCCCCc-HHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhh
Q 013375 367 RYEDAETILNAALDQTGKWEQ-GELLRTKAKVQLV-QGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 367 ~~~eA~~~~~~al~~~P~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~l~~~~ 421 (444)
+.++|..+|++|++++| +. ...++..|..+.. +|++++|...+++++...|..
T Consensus 219 d~ekA~~~ferAL~LnP--~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 219 GMEKAHTAFEHLTRYCS--AHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp CHHHHHHHHHHHHHHCC--TTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred CHHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999 64 9999999999988 499999999999999988863
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.96 E-value=4.8e-09 Score=81.43 Aligned_cols=70 Identities=17% Similarity=0.057 Sum_probs=66.8
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375 313 NMRDLSILYRLSLEYAEQRK---LNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 313 ~P~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
+|+|++++..+|.+++..++ .++|...++++++++|++ ..++..+|.+++..|+|++|+.+|+++++.+|
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN-EAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 79999999999999987666 799999999999999999 59999999999999999999999999999999
No 210
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.91 E-value=4.7e-07 Score=92.20 Aligned_cols=240 Identities=8% Similarity=-0.072 Sum_probs=152.2
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC-chHHHHHHHHhhc-CCCCCCChHHHHHHHHHHhc---CCCCHH
Q 013375 175 GDLSSLATQIEELLPGIINRKERYHILALCYYGAGE-DLVALNLLRTLLS-GSEDPKCLPALLIASKICGE---YPDLAE 249 (444)
Q Consensus 175 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~-~~~A~~~~~~al~-~~~~P~~~~a~~~~~~~~~~---~~~~~~ 249 (444)
|+++.+...|++++...| +.+.|..+.......|. .+.....|+.++. ...+|.+...+......+.. ..++.+
T Consensus 28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~ 106 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIE 106 (493)
T ss_dssp TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHH
T ss_pred CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHH
Confidence 778888888888888777 77788877777666653 3456677777773 02366666666544333211 123456
Q ss_pred HHHHHHHHHHHHcCCCcchhhhHHHHHhhhh-----------------------hhhhhhhhh----------chHHHH-
Q 013375 250 EGATFASRALECLGDGCDQMESTANCLLGIS-----------------------LSAQSKVAI----------TDFDRA- 295 (444)
Q Consensus 250 eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~-----------------------~~~~~~~~~----------~~~~~~- 295 (444)
.+...|+++|. .|..........+...... |........ .+.++.
T Consensus 107 ~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 107 KIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 67778888887 4443211100111110000 000000000 001111
Q ss_pred -------hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHH-------
Q 013375 296 -------TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARI------- 361 (444)
Q Consensus 296 -------~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~------- 361 (444)
+..+.....|++++ ...|.++..|+..+..+.+.|+.++|...|++|+.. |.+. ..|...+..
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al-~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~-~l~~~y~~~~e~~~~~ 262 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYIL-DSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM-FLSLYYGLVMDEEAVY 262 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHH-HHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS-HHHHHHHHHTTCTHHH
T ss_pred CccCcchhhHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH-HHHHHHHhhcchhHHH
Confidence 11345678999999 999999999999999999999999999999999999 9874 666544432
Q ss_pred ---------------------------------HHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhC-CHHHH
Q 013375 362 ---------------------------------LSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQG-QLKGA 407 (444)
Q Consensus 362 ---------------------------------l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g-~~~~A 407 (444)
+...+..+.|...|++| . .|+ ....+|...|.+....| +++.|
T Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~-~~~~v~i~~A~lE~~~~~d~~~a 339 (493)
T 2uy1_A 263 GDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEG-VGPHVFIYCAFIEYYATGSRATP 339 (493)
T ss_dssp HHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC-CCHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC-CChHHHHHHHHHHHHHCCChHHH
Confidence 22356788899999999 4 442 35677777787777777 58999
Q ss_pred HHHHHHHHHHHHhhh
Q 013375 408 VETYTHLLAALQVQT 422 (444)
Q Consensus 408 ~~~~~~al~l~~~~~ 422 (444)
...|+.+++..|+..
T Consensus 340 r~ife~al~~~~~~~ 354 (493)
T 2uy1_A 340 YNIFSSGLLKHPDST 354 (493)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCCH
Confidence 999999988766543
No 211
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.91 E-value=3.1e-09 Score=107.86 Aligned_cols=121 Identities=9% Similarity=-0.004 Sum_probs=102.6
Q ss_pred HhhHHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-----CCCC--hHHHHHHH
Q 013375 295 ATRQAKALQALVSAARST-----NMRDL---SILYRLSLEYAEQRKLNAAHYYAKMLLKLE-----GGSN--LKGWLLMA 359 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~-----~P~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~~~--~~~~~~la 359 (444)
.|++++|+..|++++ ++ .|+++ .++.+||.+|..+|++++|+.++++++++. |+|+ +..+++||
T Consensus 322 qg~~~eA~~l~~~aL-~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 322 EGLYHEVVKLCRECL-EKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTCHHHHHHHHHHHH-HHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 478999999999998 74 45565 567899999999999999999999999863 6664 35688999
Q ss_pred HHHHHccCHHHHHHHHHHHHhh-----cCCCCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 013375 360 RILSAQKRYEDAETILNAALDQ-----TGKWEQ---GELLRTKAKVQLVQGQLKGAVETYTHLLAAL 418 (444)
Q Consensus 360 ~~l~~~g~~~eA~~~~~~al~~-----~P~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 418 (444)
.+|..+|+|++|+..|++|+++ -| ++ .....+++.++.++|++++|...|+++.+-.
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~--~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGP--SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCT--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999964 35 44 5666789999999999999999999997644
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.90 E-value=1.3e-08 Score=85.47 Aligned_cols=98 Identities=11% Similarity=0.037 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhc-C-CCChHHHHHHHHHHHHccCHHHH
Q 013375 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQR---KLNAAHYYAKMLLKLE-G-GSNLKGWLLMARILSAQKRYEDA 371 (444)
Q Consensus 297 ~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~-P-~~~~~~~~~la~~l~~~g~~~eA 371 (444)
....+.+.|.+.+ ..+|.+.++.+++|+++.+.+ ++++++..++..++.+ | ++ .++++++|..+++.|+|++|
T Consensus 13 ~l~~~~~~y~~e~-~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~-rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEK-AAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQ-RDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHH-HTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH-HHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHH-ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccch-HHHHHHHHHHHHHccCHHHH
Confidence 4678889999999 999999999999999999998 6779999999999999 8 44 59999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHH
Q 013375 372 ETILNAALDQTGKWEQGELLRTKAKVQ 398 (444)
Q Consensus 372 ~~~~~~al~~~P~~~~~~~~~~la~~~ 398 (444)
+.+++++|+..| +|..+...+-.+.
T Consensus 91 ~~y~~~lL~ieP--~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 91 LKYVRGLLQTEP--QNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CCHHHHHHHHHHH
Confidence 999999999999 8888877765554
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.80 E-value=2.4e-08 Score=77.38 Aligned_cols=74 Identities=11% Similarity=-0.027 Sum_probs=67.6
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH
Q 013375 157 IEWDPSILDHLSFAFSIAGD---LSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (444)
Q Consensus 157 ~p~~~~~~~~lg~~l~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~ 232 (444)
+|++++++..+|.++...++ .++|...++++++++|+++.+++.+|..++..|+|++|+..+++++ ..+|+++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l--~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLL--DSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--TCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCcc
Confidence 58999999999999987665 6999999999999999999999999999999999999999999999 88998544
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.52 E-value=2.5e-07 Score=92.36 Aligned_cols=86 Identities=14% Similarity=0.149 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHHhh-----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----cCCCC--hHHHHHHHH
Q 013375 296 TRQAKALQALVSAARST-----NMRDLS---ILYRLSLEYAEQRKLNAAHYYAKMLLKL-----EGGSN--LKGWLLMAR 360 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~-----~P~~~~---a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~--~~~~~~la~ 360 (444)
|++++|+..|++++ ++ .|+++. ++.+||.+|..+|++++|+.++++++++ -|+++ +..+++||.
T Consensus 312 g~~~eA~~~~~~~L-~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 312 KSPSELLEICELSQ-EKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp SCHHHHHHHHHHHH-HHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH-HHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 57899999999998 73 566664 5689999999999999999999999875 35553 356889999
Q ss_pred HHHHccCHHHHHHHHHHHHhhc
Q 013375 361 ILSAQKRYEDAETILNAALDQT 382 (444)
Q Consensus 361 ~l~~~g~~~eA~~~~~~al~~~ 382 (444)
+|..+|+|++|+..|++|+++.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999653
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.52 E-value=6.7e-07 Score=75.08 Aligned_cols=99 Identities=12% Similarity=0.012 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhC-C-CCHHHHHHHHHH
Q 013375 249 EEGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTN-M-RDLSILYRLSLE 326 (444)
Q Consensus 249 ~eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~-P-~~~~a~~~lg~~ 326 (444)
..+...|.+.++..+++ ..+.+.+|.++.... ..++.++++..++.++ +.+ | ++.+.+|+||..
T Consensus 15 ~~~~~~y~~e~~~~~~~-----~~~~F~ya~~Lv~S~--------~~~~~~~gI~lLe~ll-~~~~p~~~rd~lY~LAv~ 80 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVS-----KSTQFEYAWCLVRSK--------YNDDIRKGIVLLEELL-PKGSKEEQRDYVFYLAVG 80 (152)
T ss_dssp HHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHTCS--------SHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCc-----HHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHHH-hcCCccchHHHHHHHHHH
Confidence 34556667776633322 567888888886532 1246789999999999 888 7 678999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 013375 327 YAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARIL 362 (444)
Q Consensus 327 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l 362 (444)
++++|+|++|+++++++|+++|++. .+......+-
T Consensus 81 ~~kl~~Y~~A~~y~~~lL~ieP~n~-QA~~Lk~~ie 115 (152)
T 1pc2_A 81 NYRLKEYEKALKYVRGLLQTEPQNN-QAKELERLID 115 (152)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHH
Confidence 9999999999999999999999994 8877655543
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.51 E-value=2.5e-07 Score=92.39 Aligned_cols=92 Identities=7% Similarity=-0.011 Sum_probs=78.0
Q ss_pred HcCCHHHHHHHHHHHHhh-----cCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhc-----CC-CCcHHHHHHHH
Q 013375 329 EQRKLNAAHYYAKMLLKL-----EGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQT-----GK-WEQGELLRTKA 395 (444)
Q Consensus 329 ~~g~~~~A~~~~~~al~l-----~P~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~-----P~-~~~~~~~~~la 395 (444)
..|++++|+..|++++++ .|+|+ +..+.++|.+|..+|+|++|+.+++++++.. |+ ++-...++++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 358999999999999985 45653 3568899999999999999999999999652 30 04467789999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375 396 KVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
.++..+|++++|+..|+++++|...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999864
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.51 E-value=1.2e-06 Score=69.09 Aligned_cols=79 Identities=8% Similarity=-0.008 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC-------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcH
Q 013375 316 DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG-------GSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQG 388 (444)
Q Consensus 316 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-------~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~ 388 (444)
++.-.+.+|..+...|++..|+..|++|+...+ .. ..++..+|.++.++|++++|+.++++++++.| ++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~-~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P--~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDK-VSVLDYLSYAVYQQGDLDKALLLTKKLLELDP--EHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccH-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCH
Confidence 456678999999999999999999999998752 23 47899999999999999999999999999999 888
Q ss_pred HHHHHHHHH
Q 013375 389 ELLRTKAKV 397 (444)
Q Consensus 389 ~~~~~la~~ 397 (444)
.+..+++.+
T Consensus 81 ~~~~n~~~~ 89 (104)
T 2v5f_A 81 RANGNLKYF 89 (104)
T ss_dssp HHHHHHHHH
T ss_pred HHHhhHHHH
Confidence 888877633
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.39 E-value=1.1e-06 Score=69.44 Aligned_cols=76 Identities=21% Similarity=0.108 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC-------CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChH
Q 013375 160 DPSILDHLSFAFSIAGDLSSLATQIEELLPG-------IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLP 232 (444)
Q Consensus 160 ~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~ 232 (444)
++.-.+.+|..+...|+|..|+..|+.|++. .+..++++.+||.++..+|++++|+..+++++ .++|++..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al--~l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL--ELDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH--hcCCCCHH
Confidence 4556788999999999999999999999975 35678999999999999999999999999999 89999988
Q ss_pred HHHHH
Q 013375 233 ALLIA 237 (444)
Q Consensus 233 a~~~~ 237 (444)
+..+.
T Consensus 82 ~~~n~ 86 (104)
T 2v5f_A 82 ANGNL 86 (104)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 76544
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.37 E-value=1.7e-06 Score=86.41 Aligned_cols=95 Identities=16% Similarity=0.079 Sum_probs=74.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhh-----cCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhhc-----CC-CCcHHHHH
Q 013375 326 EYAEQRKLNAAHYYAKMLLKL-----EGGSN--LKGWLLMARILSAQKRYEDAETILNAALDQT-----GK-WEQGELLR 392 (444)
Q Consensus 326 ~~~~~g~~~~A~~~~~~al~l-----~P~~~--~~~~~~la~~l~~~g~~~eA~~~~~~al~~~-----P~-~~~~~~~~ 392 (444)
-+..+|++++|+..+++++++ .|+|+ ...+.++|.+|..+|+|++|+.+++++++.. |+ ++-...++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 355678999999999999875 35553 3567889999999999999999999998542 30 03356688
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375 393 TKAKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 393 ~la~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
++|.++..+|++++|+..|+++++|...
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.37 E-value=1.2e-06 Score=87.45 Aligned_cols=87 Identities=14% Similarity=0.069 Sum_probs=75.2
Q ss_pred HHhhHHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-----CCCC--hHHHHHH
Q 013375 294 RATRQAKALQALVSAARST-----NMRDL---SILYRLSLEYAEQRKLNAAHYYAKMLLKLE-----GGSN--LKGWLLM 358 (444)
Q Consensus 294 ~~~~~~eA~~~~~~al~~~-----~P~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~~~--~~~~~~l 358 (444)
+.|++++|++.+++++ ++ .|+++ .++.+||.+|..+|++++|+.++++++++. |+++ +..+++|
T Consensus 299 ~~g~~~~a~~~~~~~L-~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAII-SSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HTTCHHHHHHHHHHHH-TCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHH-HhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 4578999999999999 75 56665 467899999999999999999999999763 6664 2468899
Q ss_pred HHHHHHccCHHHHHHHHHHHHhh
Q 013375 359 ARILSAQKRYEDAETILNAALDQ 381 (444)
Q Consensus 359 a~~l~~~g~~~eA~~~~~~al~~ 381 (444)
|.+|..+|++++|+..+++|+++
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999965
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.36 E-value=4.2e-06 Score=67.72 Aligned_cols=100 Identities=12% Similarity=0.017 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhc-CCCChHHHHHHHHHHHHccCHHHHH
Q 013375 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNA---AHYYAKMLLKLE-GGSNLKGWLLMARILSAQKRYEDAE 372 (444)
Q Consensus 297 ~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~---A~~~~~~al~l~-P~~~~~~~~~la~~l~~~g~~~eA~ 372 (444)
....+...|.+.+ ..++.+.++.+++|+++...++... ++..++..+.-+ |...-++++.||..+++.|+|++|+
T Consensus 16 ~l~~~~~~y~~e~-~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEK-AAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHH-HHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHh-ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 4567888999999 8999999999999999999887777 999999999987 6333589999999999999999999
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 013375 373 TILNAALDQTGKWEQGELLRTKAKVQL 399 (444)
Q Consensus 373 ~~~~~al~~~P~~~~~~~~~~la~~~~ 399 (444)
.+++..|+..| +|..+...+..+..
T Consensus 95 ~~~~~lL~~eP--~n~QA~~Lk~~i~~ 119 (126)
T 1nzn_A 95 KYVRGLLQTEP--QNNQAKELERLIDK 119 (126)
T ss_dssp HHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence 99999999999 88888877766544
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.97 E-value=0.0012 Score=67.14 Aligned_cols=115 Identities=8% Similarity=0.008 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcCCCChHHHHHHHHHHHHccCHHHHH
Q 013375 296 TRQAKALQALVSAARSTN-MRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK--LEGGSNLKGWLLMARILSAQKRYEDAE 372 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~~la~~l~~~g~~~eA~ 372 (444)
+..++|.+.|++.. ... +.|..++..+-..+.+.|++++|+..|++..+ +.|+ ...|..+-..+.+.|+.++|.
T Consensus 84 ~~l~~A~~lf~~M~-~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 84 PGLSRGFDIFKQMI-VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR--LRSYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp HHHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--cceehHHHHHHHHCCCHHHHH
Confidence 45788999999987 543 44778899999999999999999999999876 4576 488999999999999999999
Q ss_pred HHHHHHHhh--cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375 373 TILNAALDQ--TGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (444)
Q Consensus 373 ~~~~~al~~--~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 416 (444)
..+++..+. .| +...|..+-..+.+.|+.++|.+.+++.-+
T Consensus 161 ~l~~~M~~~G~~P---d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 161 EVDAHMVESEVVP---EEPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHTTCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCC---CHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 999998864 46 667788899999999999999999988754
No 223
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.85 E-value=0.00051 Score=56.40 Aligned_cols=96 Identities=8% Similarity=0.038 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013375 299 AKALQALVSAARSTNMRDLSILYRLSLEYAEQRKL---NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (444)
Q Consensus 299 ~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~---~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~ 375 (444)
....+.|.+-. .++-++++.|++|+++.+..+. .+++..++..+.-+|+..-++++.+|..+.++|+|++|..++
T Consensus 23 ~~lr~qY~~E~--~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~ 100 (144)
T 1y8m_A 23 EILRQQVVSEG--GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV 100 (144)
T ss_dssp HHHHHHHHHTT--STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHhc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444444332 2467899999999999998755 479999999999999765689999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHH
Q 013375 376 NAALDQTGKWEQGELLRTKAKVQ 398 (444)
Q Consensus 376 ~~al~~~P~~~~~~~~~~la~~~ 398 (444)
+..|+..| +|..+...+..+.
T Consensus 101 d~lL~~eP--~n~QA~~Lk~~Ie 121 (144)
T 1y8m_A 101 DTLFEHER--NNKQVGALKSMVE 121 (144)
T ss_dssp HHHHHTCC--CCHHHHHHHHHHH
T ss_pred HHHHhcCC--CcHHHHHHHHHHH
Confidence 99999999 8888777665554
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.80 E-value=0.00016 Score=59.82 Aligned_cols=109 Identities=13% Similarity=0.028 Sum_probs=91.6
Q ss_pred hCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhcCCCC-------hHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375 312 TNMRDLSILYRLSLEYAEQRKL------NAAHYYAKMLLKLEGGSN-------LKGWLLMARILSAQKRYEDAETILNAA 378 (444)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~g~~------~~A~~~~~~al~l~P~~~-------~~~~~~la~~l~~~g~~~eA~~~~~~a 378 (444)
..|+|++.|......+...|+. ++-++.|++|++.-|-.. ...|...|.. ...++.++|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 6899999999999999988999 899999999998776521 2456666655 5669999999999999
Q ss_pred HhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 379 LDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 379 l~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
+.+.. ..+.+|...|.....+|+.+.|...+.+++.+.|+...
T Consensus 87 ~~~hK--kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 87 RANCK--KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHCT--TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHhH--HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 99876 67999999999999999999999999999998886544
No 225
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.75 E-value=0.00029 Score=57.13 Aligned_cols=84 Identities=6% Similarity=0.012 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH
Q 013375 315 RDLSILYRLSLEYAEQRKL---NAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL 391 (444)
Q Consensus 315 ~~~~a~~~lg~~~~~~g~~---~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~ 391 (444)
-.+.+.+++|+++.+..+. .+++..++..++-+|...-++++.+|..+.+.|+|++|+.+++..|+..| +|..+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP--~N~QA~ 115 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER--NNKQVG 115 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT--TCHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC--CCHHHH
Confidence 4678999999999998755 47999999999999965458999999999999999999999999999999 888888
Q ss_pred HHHHHHHHH
Q 013375 392 RTKAKVQLV 400 (444)
Q Consensus 392 ~~la~~~~~ 400 (444)
..+..+..+
T Consensus 116 ~Lk~~Ie~k 124 (134)
T 3o48_A 116 ALKSMVEDK 124 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666544
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.73 E-value=0.00015 Score=58.65 Aligned_cols=82 Identities=21% Similarity=0.136 Sum_probs=73.1
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHhhcCCC-C-CCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCC
Q 013375 154 LKRIEWDPSILDHLSFAFSIAGDLSS---LATQIEELLPGI-I-NRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP 228 (444)
Q Consensus 154 l~~~p~~~~~~~~lg~~l~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P 228 (444)
+...+...++.+++|.+|.+..+... ++..++..++.+ | ..-+..|.||..+++.|+|++|...++.+| +.+|
T Consensus 28 ~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL--~~eP 105 (126)
T 1nzn_A 28 KAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL--QTEP 105 (126)
T ss_dssp HHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCT
T ss_pred hccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HhCC
Confidence 45567889999999999999988766 999999999987 5 678999999999999999999999999999 8999
Q ss_pred CChHHHHHH
Q 013375 229 KCLPALLIA 237 (444)
Q Consensus 229 ~~~~a~~~~ 237 (444)
+|..+..+.
T Consensus 106 ~n~QA~~Lk 114 (126)
T 1nzn_A 106 QNNQAKELE 114 (126)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999887543
No 227
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.70 E-value=0.0018 Score=65.65 Aligned_cols=174 Identities=9% Similarity=0.007 Sum_probs=119.3
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHHHHHHH
Q 013375 67 ELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEAILLLM 146 (444)
Q Consensus 67 ~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eAi~~l~ 146 (444)
..+-..+.+.|++++|+..|+++.+..-.++..... .+-..+...+. .......+..++|..++.
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn----~Li~~c~~~~~-----------~~~~~~~~~l~~A~~lf~ 94 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYN----VLLYVCSLAEA-----------ATESSPNPGLSRGFDIFK 94 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHH----HHHHHHTTCCC-----------CSSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHH----HHHHHHHhCCc-----------hhhhhhcchHHHHHHHHH
Confidence 333466789999999999999998763222322111 11111111110 011234556788887762
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCC
Q 013375 147 ILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI-INRKERYHILALCYYGAGEDLVALNLLRTLLSGS 225 (444)
Q Consensus 147 ~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~ 225 (444)
+-...-.+-|...|..+-.++.+.|++++|.+.|++..+.. ..+...|..+-..|.+.|+.++|..+|++-.+..
T Consensus 95 ----~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 95 ----QMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp ----HHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ----HHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 21222234477889999999999999999999999887542 3367889999999999999999999999988656
Q ss_pred CCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 013375 226 EDPKCLPALLIASKICGEYPDLAEEGATFASRALEC 261 (444)
Q Consensus 226 ~~P~~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~ 261 (444)
..|+... +..+...+ ...|+.++|...+++.-+.
T Consensus 171 ~~Pd~~t-y~~Li~~~-~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 171 VVPEEPE-LAALLKVS-MDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp CCCCHHH-HHHHHHHH-HHTTCHHHHHHHHHHHHHH
T ss_pred CCCCHHH-HHHHHHHH-hhCCCHHHHHHHHHHHHHh
Confidence 7787543 33333443 3478999999999998774
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.36 E-value=0.0046 Score=51.17 Aligned_cols=54 Identities=6% Similarity=-0.077 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
++.++|.+.|+.++ .++...+.+|...|..-.++|++..|.+.+.+|+.+.|..
T Consensus 74 ~D~d~aR~vy~~a~-~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMAR-ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHH-HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 45677788888888 7777777777777777778888888888888888887774
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.25 E-value=0.00098 Score=56.25 Aligned_cols=52 Identities=10% Similarity=-0.038 Sum_probs=41.8
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 013375 295 ATRQAKALQALVSAARSTNMRDLS---------ILYRLSLEYAEQRKLNAAHYYAKMLLKLE 347 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 347 (444)
.+.|+-|+-....++ .+..++++ +++.+|.+++..|+|..|...|++||.+.
T Consensus 33 ~~LY~sA~~La~lLl-Sl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 33 AGLHSNVRLLSSLLL-TLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp TTCHHHHHHHHHHHH-HHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH-HhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 356888888887766 55544444 78999999999999999999999997654
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.22 E-value=0.0017 Score=52.57 Aligned_cols=82 Identities=12% Similarity=0.104 Sum_probs=66.0
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR-DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 349 (444)
..+.+.++.++..-. ...+..++|..++..+ +.+|. .-+.+|.||..++++|+|++|.++.+..|++.|+
T Consensus 40 ~qt~F~yAw~Lv~S~--------~~~d~~~GI~LLe~l~-~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 40 IQSRFNYAWGLIKST--------DVNDERLGVKILTDIY-KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp HHHHHHHHHHHHHSS--------CHHHHHHHHHHHHHHH-HHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred hhhHHHHHHHHHcCC--------CHHHHHHHHHHHHHHH-hcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 466777777665421 1235679999999999 89994 5789999999999999999999999999999999
Q ss_pred CChHHHHHHHHHH
Q 013375 350 SNLKGWLLMARIL 362 (444)
Q Consensus 350 ~~~~~~~~la~~l 362 (444)
+. .+......|-
T Consensus 111 N~-QA~~Lk~~Ie 122 (134)
T 3o48_A 111 NK-QVGALKSMVE 122 (134)
T ss_dssp CH-HHHHHHHHHH
T ss_pred CH-HHHHHHHHHH
Confidence 94 8777655543
No 231
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.15 E-value=0.0032 Score=53.15 Aligned_cols=92 Identities=21% Similarity=0.143 Sum_probs=72.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCCCC--------hHHHHHHHHHHHHccCHHHHHHHHHHHHhhc---CCC-----
Q 013375 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGGSN--------LKGWLLMARILSAQKRYEDAETILNAALDQT---GKW----- 385 (444)
Q Consensus 322 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--------~~~~~~la~~l~~~g~~~eA~~~~~~al~~~---P~~----- 385 (444)
.-...+...|.|+.|+-....++.+..+++ .+++..+|.+++.+|+|..|...|++||... |+.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 334456678999999999999887765443 1378889999999999999999999998542 210
Q ss_pred ---------------CcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013375 386 ---------------EQGELLRTKAKVQLVQGQLKGAVETYTH 413 (444)
Q Consensus 386 ---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 413 (444)
...++.|..+.|+.++|++++|+..++.
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1237889999999999999999998764
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.09 E-value=0.0025 Score=52.31 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=65.1
Q ss_pred hHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375 271 STANCLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMR-DLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 271 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 349 (444)
....|+++.++..-. ...+..+++..++..+ ..+|. .-+.+|.||..++++|+|++|.++++..|++.|+
T Consensus 39 ~~t~F~YAw~Lv~S~--------~~~di~~GI~LLe~l~-~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 39 IQSRFNYAWGLIKST--------DVNDERLGVKILTDIY-KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp HHHHHHHHHHHHHSS--------SHHHHHHHHHHHHHHH-HHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHHH-hcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 456677777665421 1245679999999999 89984 5689999999999999999999999999999999
Q ss_pred CChHHHHHHHHH
Q 013375 350 SNLKGWLLMARI 361 (444)
Q Consensus 350 ~~~~~~~~la~~ 361 (444)
+. ++..+...+
T Consensus 110 n~-QA~~Lk~~I 120 (144)
T 1y8m_A 110 NK-QVGALKSMV 120 (144)
T ss_dssp CH-HHHHHHHHH
T ss_pred cH-HHHHHHHHH
Confidence 94 777665544
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.022 Score=60.18 Aligned_cols=113 Identities=12% Similarity=0.020 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--c-CCHHHHHHHHHHHHh--------hcCCCC---------hHHHHH
Q 013375 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAE--Q-RKLNAAHYYAKMLLK--------LEGGSN---------LKGWLL 357 (444)
Q Consensus 298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~--~-g~~~~A~~~~~~al~--------l~P~~~---------~~~~~~ 357 (444)
++.|+..+++.. ..+|... +++..+.+... . .+--+|+....++++ +.+.+. ...+..
T Consensus 265 ~~~a~~~le~L~-~~~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~ 342 (754)
T 4gns_B 265 VDFTIDYLKGLT-KKDPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNI 342 (754)
T ss_dssp HHHHHHHHHHHH-HHCGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhCCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHH
Confidence 588999999999 9999764 33333333221 2 233468877777764 223321 123444
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 013375 358 MARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHL 414 (444)
Q Consensus 358 la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 414 (444)
-+..+..+|+|+-|+.+.++|+...| ..+..|+.++.+|..+|+++.|+-.+...
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aP--seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELAL--DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCc--hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 47778888999999999999999999 89999999999999999999999887665
No 234
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.42 E-value=0.0023 Score=58.40 Aligned_cols=124 Identities=13% Similarity=0.001 Sum_probs=92.0
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHH-HHHHHHHccCHHHHHH
Q 013375 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLL-MARILSAQKRYEDAET 373 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~-la~~l~~~g~~~eA~~ 373 (444)
.+..++|++.....| +.+|.|++....|-..+.-.|+++.|.+.++-+.+++|+.. ..-.. ...|.. .
T Consensus 10 ~g~L~~al~~~~~~V-R~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~-~~a~~yr~lI~a--------E- 78 (273)
T 1zbp_A 10 EGQLQQALELLIEAI-KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL-PGASQLRHLVKA--------A- 78 (273)
T ss_dssp TTCHHHHHHHHHHHH-HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHH--------H-
T ss_pred CCCHHHHHHHHHHHH-HhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHH--------H-
Confidence 467899999999999 99999999999999999999999999999999999999973 33222 111111 1
Q ss_pred HHHHHH-h--hcCC----CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhhccCcc
Q 013375 374 ILNAAL-D--QTGK----WEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQTKTFSSDK 429 (444)
Q Consensus 374 ~~~~al-~--~~P~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 429 (444)
..+..+ . ..|. +.........+......|+.++|.+.-.++++..|...++.....
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~~~~ 141 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTS 141 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETTEE
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcCCCC
Confidence 112222 1 1121 023445566788888899999999999999999987777555433
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.15 E-value=0.22 Score=48.40 Aligned_cols=95 Identities=18% Similarity=0.121 Sum_probs=52.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcC--CCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHhhc----CCC-CcHHHH
Q 013375 322 RLSLEYAEQRKLNAAHYYAKMLLKLEG--GSN---LKGWLLMARILSAQKRYEDAETILNAALDQT----GKW-EQGELL 391 (444)
Q Consensus 322 ~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~---~~~~~~la~~l~~~g~~~eA~~~~~~al~~~----P~~-~~~~~~ 391 (444)
.||..|...|++.+|.+.+.+.+.--. |+. .+.+..-..++..+|++.++..++.+|.... |+| -.+.+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 566666666666666666666654211 111 2344455556666666666666666665332 200 013334
Q ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHH
Q 013375 392 RTKAKVQL-VQGQLKGAVETYTHLLA 416 (444)
Q Consensus 392 ~~la~~~~-~~g~~~~A~~~~~~al~ 416 (444)
..-|..+. ..++|.+|...|-++++
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 45566666 66666666666666553
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.87 E-value=0.16 Score=49.35 Aligned_cols=66 Identities=14% Similarity=0.019 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375 354 GWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 354 ~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~ 421 (444)
+...++..+...|++.+|+..+.+++..+| -+..+|..+-.++...|+..+|+..|+++-+...+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P--~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~e 238 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADD 238 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 344566677778888888888888888888 777788888888888888888888888877655443
No 237
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.46 E-value=0.093 Score=52.77 Aligned_cols=65 Identities=11% Similarity=-0.021 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 013375 297 RQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILS 363 (444)
Q Consensus 297 ~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~ 363 (444)
.+..|...|.+|+ .+.|++...++.||.+....|+.-+|+-+|-|++.....++ .++.++..++.
T Consensus 167 ~~~~A~~~Y~~A~-~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~-~a~~nL~~~f~ 231 (497)
T 1ya0_A 167 QTSQAESYYRHAA-QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP-AASTNLQKALS 231 (497)
T ss_dssp CHHHHHHHHHHHH-HHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCCh-hHHHHHHHHHH
Confidence 4567777777777 77777777777777777777777777777777776665563 77777766554
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.16 Score=53.65 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013375 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAA 378 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~a 378 (444)
.+.--+..+...|+++-|++..++|+.+.|.. ..+|..|+.+|..+|+|+.|+-.+...
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse-F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDS-FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchh-hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34444666778899999999999999999998 699999999999999999999887655
No 239
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.11 E-value=3.4 Score=42.56 Aligned_cols=116 Identities=11% Similarity=-0.007 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHH
Q 013375 296 TRQAKALQALVSAARSTNMRDLSILYR----LSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDA 371 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~a~~~----lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA 371 (444)
.+.+.|...+.+.. ...+-+...... +|.-+...+...++...+.+.....+++ .......+. ....|+++.|
T Consensus 228 ~d~~~A~~~~~~~~-~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~r~-Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLA-QAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERRVRM-ALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHHH-HHHHTCHHHH
T ss_pred cCHHHHHHHHHhhh-hccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh-HHHHHHHHH-HHHCCCHHHH
Confidence 35688888888876 554445443332 2333333454678888888876554443 233233344 4467999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (444)
Q Consensus 372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 416 (444)
..++++.-...+ ......|=+|.++..+|+.++|...|+++..
T Consensus 305 ~~~~~~l~~~~~--~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAK--EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGG--GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcccccc--ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999977655433 4567777789999999999999999999875
No 240
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.64 E-value=2.4 Score=41.10 Aligned_cols=181 Identities=14% Similarity=0.010 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHhCcCCCCChHHHHHHHHHHHHHHhhhcCCCCCCccccccCccccCCCcHHHH
Q 013375 62 LNRAVELLPELWKLADAPRETIMSYRRALLPCWNLDAETTAKLQKEFAIFLLYCGGETCPPNLRSQMGSSFVPRNNIEEA 141 (444)
Q Consensus 62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~~~~~~~~~~~~l~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA 141 (444)
-+.++..+|.+|.+.|+.++-..........=..+.-.-+..+.+.+-.... . ++ +..+.-
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~--~----------------~~-~~~~~~ 78 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFL--D----------------MD-AGTGIE 78 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHT--T----------------SC-CCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHh--c----------------CC-CcHHHH
Confidence 3578899999999999999999988877554111121112222222222211 0 01 122333
Q ss_pred HHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHhhcCC----CCC--CHHHHHHHHHHHHHCCCc
Q 013375 142 ILLLMILLRKVALKRIEWDPS----ILDHLSFAFSIAGDLSSLATQIEELLPG----IIN--RKERYHILALCYYGAGED 211 (444)
Q Consensus 142 i~~l~~~~~~~~l~~~p~~~~----~~~~lg~~l~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~la~~l~~~g~~ 211 (444)
+.+...++... .+.+-.. +-..+|..|...|++.+|...+.+.++- +.. -.+.+..-..+|...|++
T Consensus 79 ~~~~~~~~~~a---~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~ 155 (394)
T 3txn_A 79 VQLCKDCIEWA---KQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNL 155 (394)
T ss_dssp HHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccH
Confidence 33332221110 1011111 1227899999999999998888777642 211 235666678889999999
Q ss_pred hHHHHHHHHhhcC--C--CCCCChHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHcCC
Q 013375 212 LVALNLLRTLLSG--S--EDPKCLPALLIASKICGE-YPDLAEEGATFASRALECLGD 264 (444)
Q Consensus 212 ~~A~~~~~~al~~--~--~~P~~~~a~~~~~~~~~~-~~~~~~eA~~~~~~al~~~~~ 264 (444)
.++...|.++.+. . .+|.-...+...+++++. ..+++++|..+|-.+++-.+.
T Consensus 156 ~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 156 PKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 9999999988621 1 122211223344566666 789999999999998875543
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.43 E-value=0.62 Score=45.23 Aligned_cols=60 Identities=10% Similarity=-0.120 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 013375 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL 379 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al 379 (444)
+...++..+...|++++|+..+.+++..+|-+ -.+|..+-.++...|+..+|+..|++.-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~-E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYR-EPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556677788999999999999999999998 4899999999999999999999988764
No 242
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.42 E-value=1.3 Score=46.61 Aligned_cols=48 Identities=8% Similarity=0.011 Sum_probs=38.7
Q ss_pred HHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013375 170 AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 170 ~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al 222 (444)
.....|++++|.+..+. .+++..|..+|..+...|+++.|+.+|.++=
T Consensus 661 ~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34567899988887542 3578899999999999999999999999876
No 243
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.06 E-value=0.5 Score=39.78 Aligned_cols=102 Identities=11% Similarity=0.032 Sum_probs=75.1
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH--hh--cCCC--
Q 013375 312 TNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAAL--DQ--TGKW-- 385 (444)
Q Consensus 312 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al--~~--~P~~-- 385 (444)
+-|..++--..++.++.-.|.+..|+-.+.+ + +...+.+..+.++.+.++|..|+..+++.+ +. +|+.
T Consensus 28 L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~---l---NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~ 101 (242)
T 3kae_A 28 LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK---L---NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDA 101 (242)
T ss_dssp HC----CTHHHHHHHHHHTTCHHHHHHHHHT---C---CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCH
T ss_pred HccCChHHHhhhhhhhhhcchHhHHHHHHHh---c---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccc
Confidence 4566667778889999999999998877632 2 225777778999999999999999999999 22 3321
Q ss_pred ---------CcHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013375 386 ---------EQGE-LLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 386 ---------~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 419 (444)
.+.+ .+..+|.++.+.|..+||+..|.....+.+
T Consensus 102 ~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 102 RIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp HHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence 2333 345679999999999999999988776543
No 244
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.03 E-value=0.2 Score=50.30 Aligned_cols=80 Identities=10% Similarity=-0.076 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 013375 318 SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKV 397 (444)
Q Consensus 318 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~ 397 (444)
..+..||.+..-...++.|..+|.+|+.++|++ ...++.||.+....|+.-+|+-+|-+++.... ....+..++..+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~-G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~--Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN-GQPYNQLAILASSKGDHLTTIFYYCRSIAVKF--PFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB-SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB--CCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCC-CchHHHHHHHHhcccccHHHHHHHHHHHhcCC--CChhHHHHHHHH
Confidence 357789999888899999999999999999999 59999999999999999999999999997655 477778888777
Q ss_pred HHH
Q 013375 398 QLV 400 (444)
Q Consensus 398 ~~~ 400 (444)
+..
T Consensus 230 f~~ 232 (497)
T 1ya0_A 230 LSK 232 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 245
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.98 E-value=1.2 Score=37.59 Aligned_cols=99 Identities=18% Similarity=0.275 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCC------------
Q 013375 158 EWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGS------------ 225 (444)
Q Consensus 158 p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~------------ 225 (444)
|..++-..+++..+.-.|.+..++-.+.. -+...+.+.-+.+|....+|..|+.+++..++.+
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 66666677889999999999998877653 3456777778999999999999999999988322
Q ss_pred ---CCCCChHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 013375 226 ---EDPKCLPALL-IASKICGEYPDLAEEGATFASRALECL 262 (444)
Q Consensus 226 ---~~P~~~~a~~-~~~~~~~~~~~~~~eA~~~~~~al~~~ 262 (444)
.+|.+-+... .+|.+| .+.|..+||+.++.+...+.
T Consensus 105 ~ffvd~~DkEfFy~l~a~ll-tq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLC-TLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC
T ss_pred eeeeccchHHHHHHHHHHHH-HHhcCHHHhhhHhhhhcCCc
Confidence 2344444443 345554 56789999999999887753
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.58 E-value=1.1 Score=38.18 Aligned_cols=98 Identities=12% Similarity=0.023 Sum_probs=56.8
Q ss_pred HHhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH
Q 013375 294 RATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (444)
Q Consensus 294 ~~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~ 373 (444)
..|+++.|.+..+ ++ ++...|..||......|+++-|+.+|+++= + .. .+..+|...|+.+.-..
T Consensus 17 ~lg~l~~A~e~a~----~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D-~~---~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 17 EYGNLDAALDEAK----KL--NDSITWERLIQEALAQGNASLAEMIYQTQH-----S-FD---KLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HTTCHHHHHHHHH----HH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----C-HH---HHHHHHHHHTCHHHHHH
T ss_pred hcCCHHHHHHHHH----Hh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----C-HH---HHHHHHHHhCCHHHHHH
Confidence 4566666666544 33 567888888888888888888888888772 2 12 23344555677665444
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013375 374 ILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTH 413 (444)
Q Consensus 374 ~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 413 (444)
.-+.|....- + . ....++..+|+++++++.|.+
T Consensus 82 la~iA~~~g~---~-n---~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRED---F-G---SMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTTC---H-H---HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCcc---H-H---HHHHHHHHcCCHHHHHHHHHH
Confidence 4444433321 1 1 112233445566666555533
No 247
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.06 E-value=1.7 Score=47.21 Aligned_cols=93 Identities=12% Similarity=-0.084 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-----hhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh--cCCCCcHHHH
Q 013375 319 ILYRLSLEYAEQRKLNAAHYYAKMLL-----KLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQ--TGKWEQGELL 391 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al-----~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~ 391 (444)
.+..|=..|.+.|++++|...|.+.. ...|+ ...|+.+-..+.+.|+.++|+..|++..+. .| |...|
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd--vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P---DvvTY 203 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT--LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP---DLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC---CHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC--HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---cHHHH
Confidence 34455556666677777777775432 23454 466776666677777777777777766643 34 44556
Q ss_pred HHHHHHHHHhCCH-HHHHHHHHHHHH
Q 013375 392 RTKAKVQLVQGQL-KGAVETYTHLLA 416 (444)
Q Consensus 392 ~~la~~~~~~g~~-~~A~~~~~~al~ 416 (444)
..+-..+.+.|+. ++|...+++..+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 5565666666663 566666666543
No 248
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.89 E-value=4.2 Score=42.73 Aligned_cols=76 Identities=9% Similarity=-0.083 Sum_probs=53.2
Q ss_pred HhhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------hcCCCChHHHHHHHHHHHHcc
Q 013375 295 ATRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK--------LEGGSNLKGWLLMARILSAQK 366 (444)
Q Consensus 295 ~~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--------l~P~~~~~~~~~la~~l~~~g 366 (444)
.|++++|.+..+ ..+++..|-.+|..+.+.|+++.|+.+|.++=. ...++ .+.+..++.+....|
T Consensus 665 ~~~~~~A~~~~~------~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~-~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 665 VGQLTLARDLLT------DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNN-KEGLVTLAKDAETTG 737 (814)
T ss_dssp HTCHHHHHHHHT------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC-HHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHH------hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCC-HHHHHHHHHHHHHcC
Confidence 367788877633 346789999999999999999999999998622 22333 245555666666666
Q ss_pred CHHHHHHHHHH
Q 013375 367 RYEDAETILNA 377 (444)
Q Consensus 367 ~~~eA~~~~~~ 377 (444)
++..|..+|.+
T Consensus 738 ~~~~A~~~~~~ 748 (814)
T 3mkq_A 738 KFNLAFNAYWI 748 (814)
T ss_dssp CHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 66666655433
No 249
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.57 E-value=0.91 Score=41.34 Aligned_cols=57 Identities=12% Similarity=0.038 Sum_probs=53.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375 326 EYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 326 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
.+.+.|++++|+......++-+|.+ +.....+-.++.-.|+++.|...++-+.+++|
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~d-a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKD-ASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 3556799999999999999999999 69999999999999999999999999999999
No 250
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.65 E-value=0.87 Score=44.82 Aligned_cols=118 Identities=16% Similarity=0.040 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC--CCChHHHHHHHHHHHHccCHHHHHHHH
Q 013375 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEG--GSNLKGWLLMARILSAQKRYEDAETIL 375 (444)
Q Consensus 298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~~la~~l~~~g~~~eA~~~~ 375 (444)
+++.+..+++-. ..+..-..++..+|..|.+.|++++|.+.|.++..... ++..+.+.....+....+++..+...+
T Consensus 113 l~~~~~~~~~~~-~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~ 191 (429)
T 4b4t_R 113 LNEKIQKLEEDD-EGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKL 191 (429)
T ss_dssp HHHHHHHHHHCC-SCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhhc-cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 444444443322 23333456789999999999999999999999987553 333467777888888899999999999
Q ss_pred HHHHhhcCCCCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 013375 376 NAALDQTGKWEQ----GELLRTKAKVQLVQGQLKGAVETYTHLLA 416 (444)
Q Consensus 376 ~~al~~~P~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 416 (444)
.++-.......+ ..+....|.++...++|.+|...|-.++.
T Consensus 192 ~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 192 EAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 998765321122 23445667778889999999998877654
No 251
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.76 E-value=0.16 Score=50.81 Aligned_cols=110 Identities=12% Similarity=0.077 Sum_probs=59.3
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHH--------------HHHHH-HhhcCCCChHHHHHHHHHHHHccCHHHHHHHH
Q 013375 311 STNMRDLSILYRLSLEYAEQRKLNAAHY--------------YAKML-LKLEGGSNLKGWLLMARILSAQKRYEDAETIL 375 (444)
Q Consensus 311 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~--------------~~~~a-l~l~P~~~~~~~~~la~~l~~~g~~~eA~~~~ 375 (444)
.+|+=.+.+|++.+.++...|+...... .++.| +..|++..+..|+.+-..|...+.|+.|....
T Consensus 175 tlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lv 254 (523)
T 4b4t_S 175 SLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFI 254 (523)
T ss_dssp ----------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHH
Confidence 4566778889999998888887765432 22222 23344433467888888899999999999999
Q ss_pred HHHHhhcCCC--Cc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Q 013375 376 NAALDQTGKW--EQ---GELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQT 422 (444)
Q Consensus 376 ~~al~~~P~~--~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~~ 422 (444)
.++. +|.. .+ ...+|..|.+..-+++|.+|.+++..|+..+|...
T Consensus 255 sk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 255 SKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred hcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 9884 5521 11 45667889999999999999999999998777543
No 252
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=88.18 E-value=11 Score=31.89 Aligned_cols=56 Identities=21% Similarity=0.190 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013375 159 WDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 159 ~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al 222 (444)
.|++..+.++ ...|+++.|.+..+.. ++..-|..||...+..|+++-|+.+|+++=
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 4555544443 4679999999888765 678899999999999999999999999876
No 253
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=86.25 E-value=3.4 Score=44.96 Aligned_cols=96 Identities=10% Similarity=-0.030 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHHHHHH
Q 013375 163 ILDHLSFAFSIAGDLSSLATQIEELLPG----IINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPALLIAS 238 (444)
Q Consensus 163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~~~~~ 238 (444)
.|+.+-..|++.|+.++|...|+..-.. -..+...|+.|-..|.+.|+.++|..+|++-.+....||....-....
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 3455555666666666666666443211 123455666666666666666666666666554345554332222222
Q ss_pred HHHhcCCCC-HHHHHHHHHHHHH
Q 013375 239 KICGEYPDL-AEEGATFASRALE 260 (444)
Q Consensus 239 ~~~~~~~~~-~~eA~~~~~~al~ 260 (444)
+.| +.|+ .++|...+++..+
T Consensus 209 glc--K~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 209 CMG--RQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHH--HHTCCHHHHHHHHHHHHH
T ss_pred HHH--hCCCcHHHHHHHHHHHHH
Confidence 222 1233 3455566655555
No 254
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.09 E-value=0.79 Score=45.90 Aligned_cols=141 Identities=10% Similarity=0.093 Sum_probs=58.9
Q ss_pred HhcCCCCHHHHHHHHHHHH--HHcCC----CcchhhhHHHHHhhhhhhhhhhhhhchH--HHHh-hHHHHHHHHHHHHHh
Q 013375 241 CGEYPDLAEEGATFASRAL--ECLGD----GCDQMESTANCLLGISLSAQSKVAITDF--DRAT-RQAKALQALVSAARS 311 (444)
Q Consensus 241 ~~~~~~~~~eA~~~~~~al--~~~~~----~~~~~~~~a~~~lg~~~~~~~~~~~~~~--~~~~-~~~eA~~~~~~al~~ 311 (444)
++...+++++|..+....+ +.+.. .-+...+..|++.+.++...+....... .... =...=+..++.+.-.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 3444566666666665544 22211 1123456788888887766543211000 0000 001223455555402
Q ss_pred hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC------hHHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375 312 TNMRD-LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSN------LKGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 312 ~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~------~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
.|+.. +..++-+=..|...+.++.|.....++. .|... +..++.+|.++..+++|.+|..++..|+...|
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 23332 2344556677888999999999999995 45421 24456789999999999999999999999887
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.23 E-value=19 Score=35.35 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-cCCCC----hHHHHHHHHHHHHccCHHHHHHHHHHHHh---hcCCCCc--H
Q 013375 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKL-EGGSN----LKGWLLMARILSAQKRYEDAETILNAALD---QTGKWEQ--G 388 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~----~~~~~~la~~l~~~g~~~eA~~~~~~al~---~~P~~~~--~ 388 (444)
....|+.++...|++.+|...+.....- .-.+. .+.+.....++...+++..|...+.++.. ..+.+.. .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3467888999999999999999887532 11111 35677778888899999999999988742 1220011 3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Q 013375 389 ELLRTKAKVQLVQGQLKGAVETYTHLLAALQVQ 421 (444)
Q Consensus 389 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~~ 421 (444)
..+...|.++...++|.+|-.+|..+++.....
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~ 251 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK 251 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence 455677888999999999999999998866543
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.94 E-value=25 Score=32.70 Aligned_cols=41 Identities=2% Similarity=-0.205 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHH
Q 013375 179 SLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLR 219 (444)
Q Consensus 179 ~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~ 219 (444)
+|+..-.+.-...-++++.|..+|..|...|++.+|..+|-
T Consensus 118 ~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 118 GMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 34444333333345789999999999999999999999886
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.39 E-value=4.3 Score=45.15 Aligned_cols=103 Identities=16% Similarity=0.057 Sum_probs=78.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hcCC-------------------C--ChHHHHHHHHHHHH
Q 013375 307 SAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK-LEGG-------------------S--NLKGWLLMARILSA 364 (444)
Q Consensus 307 ~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~P~-------------------~--~~~~~~~la~~l~~ 364 (444)
..+ ..-|.++-.-|-+|.++...|++++|..+|++|-. +.++ . ....|..+..++..
T Consensus 833 ~l~-~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~ 911 (1139)
T 4fhn_B 833 QLI-GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFE 911 (1139)
T ss_dssp HHH-HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHH
T ss_pred HHh-hhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHH
Confidence 345 56788888889999999999999999999998732 1111 0 01356677788888
Q ss_pred ccCHHHHHHHHHHHHhhcCCCCcH----HHHHHHHHHHHHhCCHHHHHHHH
Q 013375 365 QKRYEDAETILNAALDQTGKWEQG----ELLRTKAKVQLVQGQLKGAVETY 411 (444)
Q Consensus 365 ~g~~~eA~~~~~~al~~~P~~~~~----~~~~~la~~~~~~g~~~~A~~~~ 411 (444)
.|.++.++.....|++..+. ++. ..|.++=+.....|+|++|-.+.
T Consensus 912 ~~~~~~vi~fa~lAi~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 912 ESAYIDALEFSLLADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp TSCCHHHHHHHHHHHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred cCCHHHHHHHHHHHHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 99999999999999987642 232 36777777888999999986555
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.25 E-value=9.8 Score=42.28 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013375 164 LDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 164 ~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al 222 (444)
...+...+...|+++-+.+. +...|.++..-|-+|.++...|++++|..+|+++-
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 33455567777888766553 34456677778999999999999999999999986
No 259
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=81.65 E-value=19 Score=29.22 Aligned_cols=80 Identities=14% Similarity=-0.012 Sum_probs=62.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchH
Q 013375 134 PRNNIEEAILLLMILLRKVALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLV 213 (444)
Q Consensus 134 ~~~~~~eAi~~l~~~~~~~~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~ 213 (444)
+.++...-+..+ .+...+.+....--..+..+|+-++-...+...+.-++-+++..+.+|.+|.+.|+..+
T Consensus 73 ~C~NlKrVi~C~---------~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~ 143 (172)
T 1wy6_A 73 KCQNLKSVVECG---------VINNTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERD 143 (172)
T ss_dssp GCSCTHHHHHHH---------HHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhcHHHHHHHH---------HHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhh
Confidence 456666666553 12244555555555678899999999999999888888899999999999999999999
Q ss_pred HHHHHHHhh
Q 013375 214 ALNLLRTLL 222 (444)
Q Consensus 214 A~~~~~~al 222 (444)
|...+.+|.
T Consensus 144 a~eLl~~AC 152 (172)
T 1wy6_A 144 ATTLLIEAC 152 (172)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999998
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.51 E-value=4.5 Score=39.64 Aligned_cols=102 Identities=13% Similarity=-0.024 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcCCC---CCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCCChHHH---H
Q 013375 162 SILDHLSFAFSIAGDLSSLATQIEELLPGI---INRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPKCLPAL---L 235 (444)
Q Consensus 162 ~~~~~lg~~l~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~~~~a~---~ 235 (444)
.++..+|..+.+.|++++|.++|.++.... ....+.++....++...+++..+...+.++-.......++... -
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 477899999999999999999999987543 3457889999999999999999999999975201122222221 1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcC
Q 013375 236 IASKICGEYPDLAEEGATFASRALECLG 263 (444)
Q Consensus 236 ~~~~~~~~~~~~~~eA~~~~~~al~~~~ 263 (444)
...++.+...+++.+|...|-.++....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 1223344557899999999988887543
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.81 E-value=39 Score=31.36 Aligned_cols=81 Identities=9% Similarity=-0.030 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------hh---cCCCChHHHHHH
Q 013375 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLL----------------KL---EGGSNLKGWLLM 358 (444)
Q Consensus 298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al----------------~l---~P~~~~~~~~~l 358 (444)
..+|+.+-.+.- ...-.||+.+..+|..+.+.|++.+|..+|-..- .. .|.. ...+...
T Consensus 116 i~~ai~WS~~~g-~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e-~dlf~~R 193 (312)
T 2wpv_A 116 ITGMNNWSIKFS-EYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDST-VAEFFSR 193 (312)
T ss_dssp HHHHHHHHHHTS-SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHH-HHHHHHH
T ss_pred HHHHHHHHhhcC-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcch-HHHHHHH
Confidence 345666655443 3345799999999999999999999999884221 11 1111 1333333
Q ss_pred HH-HHHHccCHHHHHHHHHHHHh
Q 013375 359 AR-ILSAQKRYEDAETILNAALD 380 (444)
Q Consensus 359 a~-~l~~~g~~~eA~~~~~~al~ 380 (444)
+. -+...|+...|...++...+
T Consensus 194 aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 194 LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 33 35567888888877776553
No 262
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.63 E-value=51 Score=32.13 Aligned_cols=98 Identities=16% Similarity=0.031 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCC----CC--CCHHHHHHHHHHHHHCCCchHHHHHHHHhhc-CCCCCCChH---
Q 013375 163 ILDHLSFAFSIAGDLSSLATQIEELLPG----II--NRKERYHILALCYYGAGEDLVALNLLRTLLS-GSEDPKCLP--- 232 (444)
Q Consensus 163 ~~~~lg~~l~~~g~~~~A~~~~~~al~~----~p--~~~~~~~~la~~l~~~g~~~~A~~~~~~al~-~~~~P~~~~--- 232 (444)
+...|+.++...|++.+|...+.....- .+ ...+.+.....++...+++.+|...+.++.. ....|.++.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 4467899999999999999988887521 11 1256777789999999999999999998631 012333332
Q ss_pred -HHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 013375 233 -ALLIASKICGEYPDLAEEGATFASRALEC 261 (444)
Q Consensus 233 -a~~~~~~~~~~~~~~~~eA~~~~~~al~~ 261 (444)
.+...|.+ +...+++.+|-.+|..+++.
T Consensus 219 ~~~~~~~~~-~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 219 EYYNLLVKI-SLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHH-HHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHhhhHHHHHHHHHHHHhc
Confidence 22334444 44568899999999988874
No 263
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.75 E-value=23 Score=38.52 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhc
Q 013375 166 HLSFAFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLS 223 (444)
Q Consensus 166 ~lg~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~ 223 (444)
.+...+...|+++-|.+ .+..-|.++-.-|-+|.++...|++++|..+|++|-.
T Consensus 815 ~l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 36667778888876543 5566777777889999999999999999999999773
No 264
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.60 E-value=16 Score=39.79 Aligned_cols=105 Identities=7% Similarity=-0.120 Sum_probs=60.2
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC-CCC--HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC
Q 013375 153 ALKRIEWDPSILDHLSFAFSIAGDLSSLATQIEELLPGI-INR--KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK 229 (444)
Q Consensus 153 ~l~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~-p~~--~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~ 229 (444)
.+.-.|.++..-+.+|.++...|++++|..+|++|-..- .++ .........++- .. ..+.-
T Consensus 832 L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~--------------~~--e~~~~ 895 (950)
T 4gq2_M 832 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE--------------KY--HHQNL 895 (950)
T ss_dssp HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHH--------------HT--TTCSH
T ss_pred HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccC--------------cc--cccch
Confidence 456678899888999999999999999999999986321 111 000011111111 11 11111
Q ss_pred ChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhhHHH
Q 013375 230 CLPALLIASKICGEYPDLAEEGATFASRALECLGDGCDQMESTAN 274 (444)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~a~ 274 (444)
....|+.... .++..+-++-++.+.+.||+...++++......|
T Consensus 896 ~~~YY~hV~~-LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~ 939 (950)
T 4gq2_M 896 LSCYYLHLSK-KLFEESAYIDALEFSLLADASKETDDEDLSIAIT 939 (950)
T ss_dssp HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHH
T ss_pred hHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 1111222222 3455677888888888888866655554444433
No 265
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=71.43 E-value=8 Score=28.22 Aligned_cols=35 Identities=11% Similarity=0.147 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhh
Q 013375 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESS 43 (444)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~ 43 (444)
-+-.+..+|....+.|+|++|+..|..+|+.+-+.
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~ 44 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQI 44 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 34456788999999999999999999999876543
No 266
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.83 E-value=9.3 Score=29.74 Aligned_cols=33 Identities=18% Similarity=0.078 Sum_probs=28.9
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHhhh
Q 013375 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF 44 (444)
Q Consensus 12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~ 44 (444)
.+.++|+.+.+.|+-++|++.|++-|+.+++.+
T Consensus 24 ~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl 56 (116)
T 2dl1_A 24 LFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGI 56 (116)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhc
Confidence 355799999999999999999999999888755
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=66.00 E-value=87 Score=29.27 Aligned_cols=41 Identities=17% Similarity=0.054 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHH
Q 013375 179 SLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLR 219 (444)
Q Consensus 179 ~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~ 219 (444)
+|+..=.+.=...-++++.|..+|..|+..|++.+|..+|-
T Consensus 120 ~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 120 EMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 33433333223346789999999999999999999999983
No 268
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=64.18 E-value=16 Score=26.62 Aligned_cols=32 Identities=13% Similarity=0.077 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013375 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLK 345 (444)
Q Consensus 298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 345 (444)
.++|++..++|+ +. -..|++++|+.+|..+++
T Consensus 16 ~~~Ai~lv~~Av-e~---------------D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 16 EEMARKYAINAV-KA---------------DKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHH-HH---------------HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HH---------------HHhccHHHHHHHHHHHHH
Confidence 467777777777 33 345777777766666644
No 269
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=62.14 E-value=23 Score=28.72 Aligned_cols=50 Identities=14% Similarity=-0.050 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013375 296 TRQAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKL 346 (444)
Q Consensus 296 ~~~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 346 (444)
|..++--+.+...+ .-+|-+|+.++.+|.+|.+.|+..+|-+..++|.+-
T Consensus 105 ~KkDqLdki~~~~l-~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 105 GKRDKLEEIGREIL-KNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp TCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccHhHHHHHHHHHh-ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 44555556666666 566777888888888888888888888888888663
No 270
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=61.17 E-value=12 Score=27.33 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhhh
Q 013375 10 LEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESSF 44 (444)
Q Consensus 10 ~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~~ 44 (444)
+-.+..+|+...+.|+|++|+..|..+|+.+.+..
T Consensus 19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~al 53 (83)
T 2w2u_A 19 ARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLV 53 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 34466789999999999999999999998765543
No 271
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=60.01 E-value=19 Score=26.67 Aligned_cols=23 Identities=30% Similarity=0.216 Sum_probs=12.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHH
Q 013375 357 LMARILSAQKRYEDAETILNAAL 379 (444)
Q Consensus 357 ~la~~l~~~g~~~eA~~~~~~al 379 (444)
..+..+.+.|+|++||.+.++|.
T Consensus 20 RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHH
Confidence 34444555555555555555543
No 272
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=59.15 E-value=2e+02 Score=31.10 Aligned_cols=178 Identities=14% Similarity=0.092 Sum_probs=98.3
Q ss_pred HHHCCCchHHHHHHHHhhcCCCC-CCCh----HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---C--cchhhhHHH
Q 013375 205 YYGAGEDLVALNLLRTLLSGSED-PKCL----PALLIASKICGEYPDLAEEGATFASRALECLGD---G--CDQMESTAN 274 (444)
Q Consensus 205 l~~~g~~~~A~~~~~~al~~~~~-P~~~----~a~~~~~~~~~~~~~~~~eA~~~~~~al~~~~~---~--~~~~~~~a~ 274 (444)
....|+.++++..+.+-+ .-. .+++ .+++.+|.+. .|..++++..+...+..... + .+.....+-
T Consensus 384 lIh~g~~~~gl~~L~~yL--~~~~s~~~~ik~GAllaLGli~---ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAa 458 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYL--PGSRASSRFIKGGSLYGLGLIY---AGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGAS 458 (963)
T ss_dssp HHTSSCTTTHHHHHTTTS--TTSCCSCHHHHHHHHHHHHHHT---TTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhc--cccCCCcHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHcCccccccccccHHHHHHHH
Confidence 335677788888888877 321 2222 2344444433 34445788888777763220 0 122222344
Q ss_pred HHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCh
Q 013375 275 CLLGISLSAQSKVAITDFDRATRQAKALQALVSAARSTNMRDL--SILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNL 352 (444)
Q Consensus 275 ~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 352 (444)
.-||.++...+ .+++++.+..++ .-+.... .+-+.||.++.-.|+-+-....+..+.+-..+. +
T Consensus 459 LGLGla~~GS~------------~eev~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~-v 524 (963)
T 4ady_A 459 LGIGLAAMGSA------------NIEVYEALKEVL-YNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGN-I 524 (963)
T ss_dssp HHHHHHSTTCC------------CHHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHH-H
T ss_pred HHHHHHhcCCC------------CHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHH-H
Confidence 55666554322 367888888888 5333211 344677888888888777666666666532221 2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHH----HHHHHHHHHhCCHH
Q 013375 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELL----RTKAKVQLVQGQLK 405 (444)
Q Consensus 353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~----~~la~~~~~~g~~~ 405 (444)
.-...+|..+...|+.+.+-..++... ..+ ++... +.+|..+...|+..
T Consensus 525 rR~aalgLGll~~g~~e~~~~li~~L~-~~~---dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 525 TRGLAVGLALINYGRQELADDLITKML-ASD---ESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp HHHHHHHHHHHTTTCGGGGHHHHHHHH-HCS---CHHHHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHHHHhhhCCChHHHHHHHHHHH-hCC---CHHHHHHHHHHHHHHhcCCCCHH
Confidence 222334444556688776666655544 333 33333 35666677888853
No 273
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=58.85 E-value=13 Score=27.03 Aligned_cols=34 Identities=21% Similarity=0.032 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHh
Q 013375 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVES 42 (444)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~ 42 (444)
-+-.+..+|+-....|+|++|+..|..+++.+-.
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3445667888999999999999999999987543
No 274
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=56.49 E-value=1e+02 Score=33.33 Aligned_cols=83 Identities=18% Similarity=0.101 Sum_probs=47.9
Q ss_pred HHhcCCHHHHHHHHHhhcCCC-CCC----HHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC-------Ch----HHH
Q 013375 171 FSIAGDLSSLATQIEELLPGI-INR----KERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK-------CL----PAL 234 (444)
Q Consensus 171 l~~~g~~~~A~~~~~~al~~~-p~~----~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~-------~~----~a~ 234 (444)
....|+.++++..+.+-+..+ .++ ..+.+.+|.++...+ .+++..+...+ . +++ +. .+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L--~-~~~~~~~~~~~~~ir~gAa 458 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNII--V-ENSGTSGDEDVDVLLHGAS 458 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHH--H-HHSSCCSCHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHH--c-CccccccccccHHHHHHHH
Confidence 445678888888888888632 122 334555565555444 57888888888 2 232 12 233
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH
Q 013375 235 LIASKICGEYPDLAEEGATFASRALE 260 (444)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~ 260 (444)
+.+|.++.. .+ -+++...+..++.
T Consensus 459 LGLGla~~G-S~-~eev~e~L~~~L~ 482 (963)
T 4ady_A 459 LGIGLAAMG-SA-NIEVYEALKEVLY 482 (963)
T ss_dssp HHHHHHSTT-CC-CHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CC-CHHHHHHHHHHHh
Confidence 444444332 22 3467777777776
No 275
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=56.33 E-value=15 Score=28.81 Aligned_cols=35 Identities=17% Similarity=0.056 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHhh
Q 013375 9 LLEAIFLKAKCLQGLGRFKEAAQSCKVILDIVESS 43 (444)
Q Consensus 9 ~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~ 43 (444)
-+..+..+|+-....|+|++|+..|..+|+.+-..
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~a 51 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHV 51 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 34456678889999999999999999999876443
No 276
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=54.31 E-value=29 Score=24.52 Aligned_cols=29 Identities=14% Similarity=0.040 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375 321 YRLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 321 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 349 (444)
..+|-.+...|++++|..+|-+|+..-|.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34555555556666666666666665555
No 277
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=53.73 E-value=24 Score=26.43 Aligned_cols=28 Identities=14% Similarity=0.050 Sum_probs=23.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcCC
Q 013375 322 RLSLEYAEQRKLNAAHYYAKMLLKLEGG 349 (444)
Q Consensus 322 ~lg~~~~~~g~~~~A~~~~~~al~l~P~ 349 (444)
.+|-.+...|+++.|+.+|-+|+..-|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 5788888888888888888888888887
No 278
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=52.61 E-value=17 Score=26.90 Aligned_cols=28 Identities=18% Similarity=-0.005 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHhh
Q 013375 195 KERYHILALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 195 ~~~~~~la~~l~~~g~~~~A~~~~~~al 222 (444)
+..+-..+..+...|+|++||.+.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444556777777777777777777666
No 279
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=51.63 E-value=18 Score=26.50 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhcccchHHHHHHHHHHHHHHHhh
Q 013375 11 EAIFLKAKCLQGLGRFKEAAQSCKVILDIVESS 43 (444)
Q Consensus 11 ~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~ 43 (444)
-.+..+|+-..+.|+|++|+..|..+|+.+-..
T Consensus 17 ~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~a 49 (86)
T 4a5x_A 17 ATVLKRAVELDSESRYPQALVCYQEGIDLLLQV 49 (86)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 345678888999999999999999999876443
No 280
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=49.21 E-value=27 Score=25.27 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=17.6
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375 394 KAKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 394 la~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
.|.-....|++++|+..|.++++....
T Consensus 17 ~Ave~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 17 LAVKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 344445567777777777777776554
No 281
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=48.26 E-value=40 Score=33.59 Aligned_cols=83 Identities=14% Similarity=0.105 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhhhhcccc-------------hH--------HHHHHHHHHHHHHHhhh---cCCCCCCCCccccHHHH
Q 013375 6 ISLLLEAIFLKAKCLQGLGR-------------FK--------EAAQSCKVILDIVESSF---AEGFPENLGADCKLQET 61 (444)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~g~-------------~~--------~A~~~~~~~l~~~~~~~---~~~~~~~~~~~~~l~~~ 61 (444)
-++..|+++.+|.+|+.+-+ .+ ...+.|..+++.++.+. |...+..... ++ +
T Consensus 105 ~~~~aea~flRA~~yf~L~~~~G~VP~~~~~~~~~~~~~~~r~~~~ev~~~I~~dL~~A~~~Lp~~~~~~~~g--r~--t 180 (517)
T 3qnk_A 105 SRLTGEVHFLRAMFYFEMVKRYGGVILLDKVLTMEDNWEIPRSSEKECYDFILEDLKKATEMLPASYGSREKG--RA--T 180 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCCSSCCCTTSCCCCCCCCHHHHHHHHHHHHHHHHHHSCSCCCSTTTT--SC--C
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCceeeCCcCCccccccCCCCCHHHHHHHHHHHHHHHHHhCccccCCcccC--cc--c
Confidence 46889999999999998732 01 13566666666554433 2210111000 11 1
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHhCc
Q 013375 62 LNRAVELLPELWKLADAPRETIMSYRRALLP 92 (444)
Q Consensus 62 ~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~ 92 (444)
-..|..+++.+|+-.+++++|++..++++..
T Consensus 181 k~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 181 KGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2357888999999999999999999999975
No 282
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=46.35 E-value=24 Score=26.25 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=27.1
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHhh
Q 013375 12 AIFLKAKCLQGLGRFKEAAQSCKVILDIVESS 43 (444)
Q Consensus 12 ~~~~~g~~~~~~g~~~~A~~~~~~~l~~~~~~ 43 (444)
.+..+|+-....|+|++|+..|..+|+.+-..
T Consensus 17 ~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~a 48 (93)
T 1wfd_A 17 AVLKRAVELDAESRYQQALVCYQEGIDMLLQV 48 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999876443
No 283
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=45.69 E-value=7 Score=24.34 Aligned_cols=10 Identities=50% Similarity=1.650 Sum_probs=8.3
Q ss_pred ccCCCCCCCC
Q 013375 435 CLSPSCPFLL 444 (444)
Q Consensus 435 ~~~~~~~~~~ 444 (444)
|..|.|||.+
T Consensus 14 CeTPnCpF~m 23 (49)
T 2eqg_A 14 CETPNCPFFM 23 (49)
T ss_dssp CSSTTCCSBC
T ss_pred ecCCCCCeEE
Confidence 7889999963
No 284
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=45.27 E-value=38 Score=24.72 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=14.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013375 393 TKAKVQLVQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 393 ~la~~~~~~g~~~~A~~~~~~al~l~~ 419 (444)
..|.-....|++++|+..|..++++..
T Consensus 21 ~~Ave~D~~g~y~eAl~lY~~Aie~ll 47 (86)
T 4a5x_A 21 KRAVELDSESRYPQALVCYQEGIDLLL 47 (86)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 334444555666666666666665543
No 285
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=43.60 E-value=97 Score=25.57 Aligned_cols=58 Identities=14% Similarity=-0.012 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCCCCCC------HHHHHH-H--HHHHHHCCCchHHHHHHHHhh
Q 013375 165 DHLSFAFSIAGDLSSLATQIEELLPGIINR------KERYHI-L--ALCYYGAGEDLVALNLLRTLL 222 (444)
Q Consensus 165 ~~lg~~l~~~g~~~~A~~~~~~al~~~p~~------~~~~~~-l--a~~l~~~g~~~~A~~~~~~al 222 (444)
..-|..++..|+|=+|.+++|.+....++. .....+ + |....+.|+...|...+.+++
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345677888899999999999999887665 122223 2 334566788888999998887
No 286
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=43.08 E-value=33 Score=24.26 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCCCC
Q 013375 166 HLSFAFSIAGDLSSLATQIEELLPGII 192 (444)
Q Consensus 166 ~lg~~l~~~g~~~~A~~~~~~al~~~p 192 (444)
.+|..+...|++++|+.+|-+|+...|
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~ 48 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCG 48 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 455666666666666666655555543
No 287
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=42.54 E-value=21 Score=25.65 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 013375 321 YRLSLEYAEQRKLNAAHYYAKMLLK 345 (444)
Q Consensus 321 ~~lg~~~~~~g~~~~A~~~~~~al~ 345 (444)
..+|.-++..|+|+.|+.+|+.++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4567777788888888888888876
No 288
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=42.32 E-value=4.1e+02 Score=29.83 Aligned_cols=75 Identities=9% Similarity=0.107 Sum_probs=46.9
Q ss_pred HHHHHHHHHHh-hcCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 013375 335 AAHYYAKMLLK-LEGGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTH 413 (444)
Q Consensus 335 ~A~~~~~~al~-l~P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 413 (444)
+-.+.|.+.++ .++.+. .+...-.+=....|+|-.|++++.+.++..| .-+.+-.++.+...+| |.++.+
T Consensus 1267 ~~~~~~~el~k~~d~~d~-k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~---~~~~~~~~~~~~~~l~-----w~h~~~ 1337 (1354)
T 3lxu_X 1267 EINELYTEIIKFVDANDS-KAIQFALWHAYAHGHYGRMYKYVVKLIEEKR---TRDHFVELAAINGALG-----HEHIRT 1337 (1354)
T ss_dssp HHHHHHHHHTTSSCTTST-TTHHHHHHHHHHHTCHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHS-----CHHHHH
T ss_pred HHHHHHHHHHhhcccCCc-eeehhHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHcC-----CHHHHH
Confidence 33444444444 344542 3332222223367999999999999999888 4567777888877776 555555
Q ss_pred HHHHH
Q 013375 414 LLAAL 418 (444)
Q Consensus 414 al~l~ 418 (444)
-++-|
T Consensus 1338 ~~~~~ 1342 (1354)
T 3lxu_X 1338 VINRM 1342 (1354)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 55544
No 289
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=42.12 E-value=1.9e+02 Score=25.86 Aligned_cols=57 Identities=11% Similarity=0.156 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCCC--CC-CHHHHHHHHHHHHHC-CCchHHHHHHHH
Q 013375 164 LDHLSFAFSIAGDLSSLATQIEELLPGI--IN-RKERYHILALCYYGA-GEDLVALNLLRT 220 (444)
Q Consensus 164 ~~~lg~~l~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~l~~~-g~~~~A~~~~~~ 220 (444)
...++.+..+.++|++.+.+..++...+ ++ +.+-..-|..+|-.. |....+++.+..
T Consensus 11 ~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiiss 71 (260)
T 1o9d_A 11 NVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISS 71 (260)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 3456667777899999999999988876 43 455555566665442 444444544443
No 290
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=40.98 E-value=42 Score=24.86 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=14.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHh
Q 013375 395 AKVQLVQGQLKGAVETYTHLLAALQV 420 (444)
Q Consensus 395 a~~~~~~g~~~~A~~~~~~al~l~~~ 420 (444)
|.-....|++++|+..|..++++...
T Consensus 22 Ave~D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 22 AVELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 33334455666666666666655443
No 291
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=40.66 E-value=54 Score=23.67 Aligned_cols=23 Identities=22% Similarity=0.036 Sum_probs=13.0
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHH
Q 013375 397 VQLVQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 397 ~~~~~g~~~~A~~~~~~al~l~~ 419 (444)
-....|++++|+..|..++++..
T Consensus 22 ~~D~~g~y~eAl~~Y~~aie~l~ 44 (85)
T 2v6x_A 22 DLDTATQYEEAYTAYYNGLDYLM 44 (85)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHH
Confidence 33445666666666666665544
No 292
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=39.69 E-value=65 Score=27.63 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Q 013375 319 ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGS 350 (444)
Q Consensus 319 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 350 (444)
-.|++|..+...+++.+|.+.+..|+..-|..
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 46788888888888888888888888887765
No 293
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=38.92 E-value=49 Score=24.70 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=24.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375 356 LLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 356 ~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
..+|..+..+|+++.|+.++-+|+...|
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 3578888899999999999999999988
No 294
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=38.83 E-value=63 Score=31.82 Aligned_cols=83 Identities=14% Similarity=0.064 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhhhhcccc---------------------hHHHHHHHHHHHHHHHhhhcCCCCCCCCccccHHHHHHH
Q 013375 6 ISLLLEAIFLKAKCLQGLGR---------------------FKEAAQSCKVILDIVESSFAEGFPENLGADCKLQETLNR 64 (444)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~g~---------------------~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 64 (444)
-++..|+.+.+|.+|+.+-+ -....+.|..+++.++.+... .|.... .-++. -..
T Consensus 106 ~~~~aEa~flRA~~yf~L~~~fG~VP~~~~~~~~~~~~~~~r~~~~evy~~I~~DL~~A~~~-Lp~~~~-~gr~t--k~a 181 (481)
T 3jq1_A 106 NSVKGECLFIRGFYLFQLAKEFKDAPLRLTASQSPSTFPLAKSSQADIWAQAKEDLKTAASL-LPITNK-IGKPT--QGA 181 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSEECCCCCCSSCCCSCCCEECHHHHHHHHHHHHHHHHHH-SCSSCS-TTSCC--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCeeeeccCCCCccccccCCCCHHHHHHHHHHHHHHHHHh-CCCCCC-CCccc--HHH
Confidence 36789999999999998732 012356677776655443321 111110 00111 125
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhCc
Q 013375 65 AVELLPELWKLADAPRETIMSYRRALLP 92 (444)
Q Consensus 65 a~~~l~~~~~~~g~~~eA~~~y~~aL~~ 92 (444)
|..+++.+|+-.|++++|++..++++..
T Consensus 182 A~allarvyL~~~~~~~A~~~a~~vi~~ 209 (481)
T 3jq1_A 182 AYAALGKIYVYEENWQEAINVLEPLTQN 209 (481)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHGGGGST
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence 7788999999999999999999999864
No 295
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=38.47 E-value=2.2e+02 Score=25.48 Aligned_cols=177 Identities=15% Similarity=0.102 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHC-CCchHHHHHHHHhhcCCC-CCCChHHHHHHH
Q 013375 162 SILDHLSFAFSIAGDLSSLATQIEELLPGIIN-RKERYHILALCYYGA-GEDLVALNLLRTLLSGSE-DPKCLPALLIAS 238 (444)
Q Consensus 162 ~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~-g~~~~A~~~~~~al~~~~-~P~~~~a~~~~~ 238 (444)
+-...++.+..+.++|++.+++..++...+++ +.+-.+-|..+|-.. |....+++.+....+ +. ..++.. .....
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieq-kee~~g~~~-~~~~i 109 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQ-KEENKGGED-KLKMI 109 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTTCHH-HHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHH-hhhccccHH-HHHHH
Confidence 34455677778889999999999999888765 455566666666542 445555555543321 10 111111 11111
Q ss_pred HHHhcCCCCH-HHHHHHHHHHHHHcCCC----cchhhhHHHH--HhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHHHHh
Q 013375 239 KICGEYPDLA-EEGATFASRALECLGDG----CDQMESTANC--LLGISLSAQSKVAITDFDRATRQAKALQALVSAARS 311 (444)
Q Consensus 239 ~~~~~~~~~~-~eA~~~~~~al~~~~~~----~~~~~~~a~~--~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~al~~ 311 (444)
.-+ + .+. +|=...+..++.+++.. .....+.+++ ..|..|...+..... ..+..-.+.|..+|++|. .
T Consensus 110 ~~y-r--~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g-~~rk~~~e~a~~aY~~A~-~ 184 (261)
T 3ubw_A 110 REY-R--QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATG-NDRKEAAENSLVAYKAAS-D 184 (261)
T ss_dssp HHH-H--HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHH-H--HHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCc-hHHHHHHHHHHHHHHHHH-H
Confidence 111 0 011 12233344444433111 1111223322 245555444333221 123344567777777765 3
Q ss_pred -----hCCCCHHHH---HHHHHHHHH-cCCHHHHHHHHHHHHh
Q 013375 312 -----TNMRDLSIL---YRLSLEYAE-QRKLNAAHYYAKMLLK 345 (444)
Q Consensus 312 -----~~P~~~~a~---~~lg~~~~~-~g~~~~A~~~~~~al~ 345 (444)
+.|.+|--+ .|.+..|++ +++.++|....++|+.
T Consensus 185 iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 185 IAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567777432 344555555 5788887777766643
No 296
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=38.04 E-value=89 Score=30.85 Aligned_cols=83 Identities=11% Similarity=0.054 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhhhhcc----c----------c-------h--H--H-------HHHHHHHHHHHHHhhh---cCCCCC
Q 013375 6 ISLLLEAIFLKAKCLQGL----G----------R-------F--K--E-------AAQSCKVILDIVESSF---AEGFPE 50 (444)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~----g----------~-------~--~--~-------A~~~~~~~l~~~~~~~---~~~~~~ 50 (444)
-++..|+++.+|.+|+.+ | . . + . ..+.|..+++.++.+. |...+.
T Consensus 115 ~~~~gEA~flRA~~Yf~L~~~fG~~y~~~~~~~~VPl~~~~~~~~~~~~~~~r~t~~evy~~I~~DL~~A~~~Lp~~~~~ 194 (495)
T 3lew_A 115 NRIKGQALALRGFLYLHLASCYSFAIDKDPDAVCAPIYTQSTDETIAAEGKPASSVSEVYAQSINDLEEALELIPETYVR 194 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCTTTCTTSEEECCCCSCC-CHHHHSCCCCEEHHHHHHHHHHHHHHHHHHSCTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccccCCCCceEEecCCCccccccCCCCCCHHHHHHHHHHHHHHHHHhcccccCc
Confidence 467899999999999976 4 1 0 0 0 1466777766554433 221111
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCc
Q 013375 51 NLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLP 92 (444)
Q Consensus 51 ~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~ 92 (444)
.... ++ +-..|..+++.+|+-.|++++|+...++++..
T Consensus 195 ~~~g--r~--tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 195 DAKH--KI--DNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp SSTT--SC--CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCC--cc--cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 0000 11 12357788999999999999999999999864
No 297
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=37.85 E-value=1e+02 Score=29.98 Aligned_cols=83 Identities=17% Similarity=0.170 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhhhhcc----cc------------------h--------HHHHHHHHHHHHHHHhhhcCCCCCCCCcc
Q 013375 6 ISLLLEAIFLKAKCLQGL----GR------------------F--------KEAAQSCKVILDIVESSFAEGFPENLGAD 55 (444)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~----g~------------------~--------~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 55 (444)
-++..|+++.+|.+|+.+ |. . ....+.|..+++.++.+... .|.... .
T Consensus 113 ~~~~gEA~flRA~~yf~L~~~fG~py~~~~~~~~~vPl~~~~~~~~~~~~r~t~~evy~~I~~DL~~A~~~-L~~~~~-~ 190 (461)
T 3kez_A 113 NDLKGQALAIRGMALFDLTRIFGYPYLKDNGASLGVPIVKELSTIDSKPARNTVAECYTEIISDLKNSTEL-LSGDFN-K 190 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCHHHHTTCSBCCCCCCSCCCTTCCCCCCBHHHHHHHHHHHHHHHHHH-SCCSCC-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccccCCcCceeEEeccCCcCCCCCCCCHHHHHHHHHHHHHHHHHh-CccccC-C
Confidence 468899999999999987 41 0 01256667776655443321 111110 0
Q ss_pred ccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCc
Q 013375 56 CKLQETLNRAVELLPELWKLADAPRETIMSYRRALLP 92 (444)
Q Consensus 56 ~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~ 92 (444)
-++ +-..|..+++.+|+-.|++++|+...+.++..
T Consensus 191 gr~--tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 191 GKV--NRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp TSC--CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred Cee--eHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 011 12357788999999999999999999999864
No 298
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=37.57 E-value=82 Score=29.25 Aligned_cols=35 Identities=9% Similarity=-0.007 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Q 013375 5 AISLLLEAIFLKAKCLQGLGRFKEAAQSCKVILDIV 40 (444)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~~l~~~ 40 (444)
++..+.+ -.+.|..+...|+|++|+..|+.+|...
T Consensus 110 ~l~~L~~-~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i 144 (325)
T 3mv2_A 110 GLDVVNE-KMNEGYKNFKLNKPDIAIECFREAIYRI 144 (325)
T ss_dssp CHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 4455555 6789999999999999999999998764
No 299
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=37.50 E-value=52 Score=25.58 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=16.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh
Q 013375 355 WLLMARILSAQKRYEDAETILNAALD 380 (444)
Q Consensus 355 ~~~la~~l~~~g~~~eA~~~~~~al~ 380 (444)
+...|.-.-..|+|++|+.+|..|++
T Consensus 21 lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 21 LASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34445555555777777777776653
No 300
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=37.47 E-value=1.1e+02 Score=29.94 Aligned_cols=84 Identities=12% Similarity=0.130 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhhhhcc----cc------------------h--------HHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 013375 5 AISLLLEAIFLKAKCLQGL----GR------------------F--------KEAAQSCKVILDIVESSFAEGFPENLGA 54 (444)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~----g~------------------~--------~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 54 (444)
.-++..|+++.+|.+|+.+ |. . ....+.|..+++.++.+.+. .|....
T Consensus 118 ~~~~~gEa~flRA~~yf~L~~~fG~~y~~~~~~~~~vPl~~~~~~~~~~~~r~t~~evy~~I~~DL~~A~~~-L~~~~~- 195 (477)
T 3mcx_A 118 LNRIKSEALVMRGLSLFNLTRLFGMPYTNDKGASLGVPIETSPSDPTHKPSRSTVAQCYEQVVSDMSNALSG-LRQETS- 195 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCGGGTTTCSBCCCCCCSSCCTTCCCCCCBHHHHHHHHHHHHHHHGGG-SCSSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccCCceeeecccCcccCCCCCCHHHHHHHHHHHHHHHHHh-Cccccc-
Confidence 3468899999999999987 41 0 01356777777766554422 121110
Q ss_pred cccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCc
Q 013375 55 DCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLP 92 (444)
Q Consensus 55 ~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~ 92 (444)
.-++ +-..|..+++.+|+-.|++++|+...++++..
T Consensus 196 ~gr~--tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 196 NGYI--NYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp TTSC--CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcC--cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 0011 12357788999999999999999999999864
No 301
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=37.46 E-value=90 Score=20.78 Aligned_cols=44 Identities=16% Similarity=0.119 Sum_probs=20.1
Q ss_pred HHHccCHHHHHHHHHHHHhhcCCCC-cHHHHHHHHHHHHHhCCHHHHH
Q 013375 362 LSAQKRYEDAETILNAALDQTGKWE-QGELLRTKAKVQLVQGQLKGAV 408 (444)
Q Consensus 362 l~~~g~~~eA~~~~~~al~~~P~~~-~~~~~~~la~~~~~~g~~~~A~ 408 (444)
-....+.+||..+-+ -++..+ + ...+-..+...+..+|+|++|+
T Consensus 16 ~TG~HcH~EA~tIA~-~L~~~~--~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 16 GTGHHCHQEAASIAD-WLAQEE--CMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHTTTCHHHHHHHHH-HHHTSS--TTHHHHHHHHHHHHHHC-------
T ss_pred HccchHHHHHHHHHH-HHHhCC--CHHHHHHHHHHHHHHccchHhHhh
Confidence 334456777655443 344444 3 3444455666677777777765
No 302
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=35.86 E-value=1.1e+02 Score=29.77 Aligned_cols=73 Identities=16% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhcc----c-----------c----------------------hHHHHHHHHHHHHHHHhhhcCCCC
Q 013375 7 SLLLEAIFLKAKCLQGL----G-----------R----------------------FKEAAQSCKVILDIVESSFAEGFP 49 (444)
Q Consensus 7 ~~~~~~~~~~g~~~~~~----g-----------~----------------------~~~A~~~~~~~l~~~~~~~~~~~~ 49 (444)
++..|+++.+|.+|+.+ | . |+.-+..+..++..++.....+.+
T Consensus 108 ~~~gEa~flRA~~yf~L~~~fG~~y~~~~~~~~~vPl~~~~~~~~~~~~r~t~~evy~~I~~DL~~A~~~L~~~~~~gr~ 187 (454)
T 3myv_A 108 ALKGETMAVIALCQFDLTRCFGYPYTKDKGASLGAPLIDHLVGTYENPPRSTVAQAYDFIIETLEEAVTLMSEEKNNGRM 187 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCHHHHTTCSEEEECCCSCCCTTCCCCEEEHHHHHHHHHHHHHHHHHHCCCSCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCccccccCCCceeeEeccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhccccccCCee
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 013375 50 ENLGADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (444)
Q Consensus 50 ~~~~~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL 90 (444)
. -..|..+++.+|+-.|++++|+...+.++
T Consensus 188 t-----------k~aa~allarvyL~~~~~~~A~~~a~~vi 217 (454)
T 3myv_A 188 N-----------KYAARALLARIYLYHDDNRKAFDLADQLI 217 (454)
T ss_dssp C-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred c-----------HHHHHHHHHHHHHhcccHHHHHHHHHHHH
No 303
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=34.15 E-value=3.9e+02 Score=27.15 Aligned_cols=231 Identities=11% Similarity=0.010 Sum_probs=122.5
Q ss_pred HHhhCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCCC
Q 013375 153 ALKRIEWDPSILDHLSF---AFSIAGDLSSLATQIEELLPGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDPK 229 (444)
Q Consensus 153 ~l~~~p~~~~~~~~lg~---~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P~ 229 (444)
.+..+|+-|..-.+... .+.+.+++..-++.|.. .|.+.+....++..+...|+..+|....+++- .-...
T Consensus 61 Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW--~~~~~ 134 (618)
T 1qsa_A 61 FVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELW--LTGKS 134 (618)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH--SCSSC
T ss_pred HHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH--hCCCC
Confidence 45778888765444433 44456788877775554 38899999999999999999999988888876 22222
Q ss_pred ChHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHcCCCcchhhhHHHHHhhhhhhhhhhhhhchHHHHhhHHHHHHHHHH
Q 013375 230 CLPALLIASKICGEYPDLAE--EGATFASRALECLGDGCDQMESTANCLLGISLSAQSKVAITDFDRATRQAKALQALVS 307 (444)
Q Consensus 230 ~~~a~~~~~~~~~~~~~~~~--eA~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~ 307 (444)
.+..+-.+...... .|... .-..-++.++.. .+. ..+......+ .. . ..++..-..
T Consensus 135 ~p~~c~~l~~~~~~-~g~lt~~~~~~R~~~al~~--~~~----~~a~~l~~~l-~~-------------~-~~~~a~~~~ 192 (618)
T 1qsa_A 135 QPNACDKLFSVWRA-SGKQDPLAYLERIRLAMKA--GNT----GLVTVLAGQM-PA-------------D-YQTIASAII 192 (618)
T ss_dssp CCTHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHT--TCH----HHHHHHHHTC-CG-------------G-GHHHHHHHH
T ss_pred CcHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHC--CCH----HHHHHHHHhC-CH-------------H-HHHHHHHHH
Confidence 33333222222221 12221 222222333331 110 1121111111 00 0 001111111
Q ss_pred HHHhhCCCCHH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHH---HHHHHHHHHHccCHHHH
Q 013375 308 AARSTNMRDLS-------------ILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKG---WLLMARILSAQKRYEDA 371 (444)
Q Consensus 308 al~~~~P~~~~-------------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~---~~~la~~l~~~g~~~eA 371 (444)
++ ..+|.+.. ....++......++.+.|...+.+...-.+-++... +..++.-+...+...++
T Consensus 193 al-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~ 271 (618)
T 1qsa_A 193 SL-ANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQ 271 (618)
T ss_dssp HH-HHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHH
T ss_pred HH-HhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHH
Confidence 22 23333322 223345555556688999999988765333332122 22333333334546788
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 013375 372 ETILNAALDQTGKWEQGELLRTKAKVQLVQGQLKGAVETYTHLL 415 (444)
Q Consensus 372 ~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 415 (444)
..++.+.....+ ++....+..+. ....|+.+.|...++++-
T Consensus 272 ~~~~~~~~~~~~--~~~~~e~~~r~-Alr~~d~~~a~~~~~~l~ 312 (618)
T 1qsa_A 272 AKWRDDAIMRSQ--STSLIERRVRM-ALGTGDRRGLNTWLARLP 312 (618)
T ss_dssp HHHHHHHHHTCC--CHHHHHHHHHH-HHHHTCHHHHHHHHHHSC
T ss_pred HHHHHhccccCC--ChHHHHHHHHH-HHHCCCHHHHHHHHHHcc
Confidence 888888776555 44444444444 456799999999887653
No 304
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=33.56 E-value=1.1e+02 Score=31.41 Aligned_cols=51 Identities=16% Similarity=0.046 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHhCCHH
Q 013375 353 KGWLLMARILSAQKRYEDAETILNAALDQTGKWEQGELLRTKAKVQLVQGQLK 405 (444)
Q Consensus 353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~la~~~~~~g~~~ 405 (444)
......|.-....|+|.-|....+.++..+| +|..+...++.++.++|.-.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p--~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEP--DNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHHhc
Confidence 3344455666677777777777777777777 77777777777777776444
No 305
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=33.35 E-value=82 Score=31.46 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhhhhcccc-------------hHH--------HHHHHHHHHHHHHhhhcCCCCC--CC--CccccHHH
Q 013375 6 ISLLLEAIFLKAKCLQGLGR-------------FKE--------AAQSCKVILDIVESSFAEGFPE--NL--GADCKLQE 60 (444)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~g~-------------~~~--------A~~~~~~~l~~~~~~~~~~~~~--~~--~~~~~l~~ 60 (444)
-++..|+.+.+|.+|+.+-+ .++ ..+.+..+++.++.+... .|. .. ...-++
T Consensus 119 ~~~~aEa~flRA~~Yf~L~~~yG~VPl~~~~~~~~~~~~~~r~~~~ev~~~I~~DL~~A~~~-Lp~~~~~~~~~~gr~-- 195 (528)
T 3i4g_A 119 TRMIAEARFLRATQYFYLASYFKNVPLVENVLTGEEANNVTKTSQADILKWCVTEFTAAAAD-LPRFSAIPAGEAGRA-- 195 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSBCCCCSCCCHHHHTTCCCBCHHHHHHHHHHHHHHHHHH-SCCGGGCCGGGTTSC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcceeCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHh-CCccccCCcccCCcC--
Confidence 46889999999999998832 111 245666666655443321 121 00 000011
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHhCc
Q 013375 61 TLNRAVELLPELWKLADAPRETIMSYRRALLP 92 (444)
Q Consensus 61 ~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~ 92 (444)
+-..|..+++.+|+-.+++++|++..+.++..
T Consensus 196 tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 196 CKQAALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 12357888999999999999999999999864
No 306
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=33.23 E-value=90 Score=26.72 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhcC
Q 013375 353 KGWLLMARILSAQKRYEDAETILNAALDQTG 383 (444)
Q Consensus 353 ~~~~~la~~l~~~g~~~eA~~~~~~al~~~P 383 (444)
...+.+|.+++.+++|.+|...+..|+...|
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~ 45 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCH 45 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCC
Confidence 5677899999999999999999999999988
No 307
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=31.15 E-value=1.9e+02 Score=28.18 Aligned_cols=84 Identities=17% Similarity=0.048 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhhhhcc----c----------c----------------hHHHHHHHHHHHHHHHhhhcCCCCCCCC-c
Q 013375 6 ISLLLEAIFLKAKCLQGL----G----------R----------------FKEAAQSCKVILDIVESSFAEGFPENLG-A 54 (444)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~----g----------~----------------~~~A~~~~~~~l~~~~~~~~~~~~~~~~-~ 54 (444)
-++..|+++.+|.+|+.+ | . -....+.|..+++.++.+...- |.... .
T Consensus 103 ~~~~gEA~flRA~~yf~L~~~fG~~Y~~~~~~~~VPl~~~~~~~~~~~~~r~t~~evy~~I~~DL~~A~~~L-~~~~~~~ 181 (460)
T 3snx_A 103 RQAQGQALALRAFCYLHLVQHYQFTYLKDKDAPCVPIYTEPTTSGTKPKGKSTVAQVYQQIFDDLNLAQDYL-TNYVRKG 181 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCTTTCTTSBCCCCCCSCCCTTCCCCCCCBHHHHHHHHHHHHHHHHHHT-TTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccCCCCCCceEEeccCCccccCCCCCCHHHHHHHHHHHHHHHHHhc-ccccCCc
Confidence 467899999999999876 3 1 0113566777766554433211 11000 0
Q ss_pred ---cccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCc
Q 013375 55 ---DCKLQETLNRAVELLPELWKLADAPRETIMSYRRALLP 92 (444)
Q Consensus 55 ---~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~ 92 (444)
..++. -..|..+++.+|+-.|++++|+...+.++..
T Consensus 182 ~~~~gr~t--k~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 182 DGQKFKPN--TDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp GGGTTSCC--HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred cccCcccC--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 00111 2357788999999999999999999999975
No 308
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.10 E-value=2.2e+02 Score=23.37 Aligned_cols=62 Identities=10% Similarity=0.096 Sum_probs=38.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhcCCCC-c-----HHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013375 358 MARILSAQKRYEDAETILNAALDQTGKWE-Q-----GELL-RTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 358 la~~l~~~g~~~eA~~~~~~al~~~P~~~-~-----~~~~-~~la~~~~~~g~~~~A~~~~~~al~l~~ 419 (444)
-+..++..|+|=+|=++++.+-...|..+ . ..+. ..-|......|+...|...+++++..-.
T Consensus 38 ~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~ 106 (161)
T 2ijq_A 38 HGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFR 106 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45566666777777777777776665210 1 1112 2223344667888888888888887543
No 309
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=30.98 E-value=2.8e+02 Score=31.20 Aligned_cols=67 Identities=10% Similarity=0.006 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHcc
Q 013375 298 QAKALQALVSAARSTNMRDLSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQK 366 (444)
Q Consensus 298 ~~eA~~~~~~al~~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g 366 (444)
.++-.+.|.+.++-.|++|..+....-+-....++|..|++++.|.++-.|. -+.+..+..++..+|
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~~--~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEKRT--RDHFVELAAINGALG 1331 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHcC
Confidence 3444566777774567888776655555555789999999999999998885 377777777665554
No 310
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=30.77 E-value=1.3e+02 Score=25.76 Aligned_cols=73 Identities=12% Similarity=-0.062 Sum_probs=0.0
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc--CCCCCCHHHHHHHHHHHHHCCCchHHHHHHHHhhcCCCCC
Q 013375 155 KRIEWDPSILDHLSFAFSIAGDLSSLATQIEELL--PGIINRKERYHILALCYYGAGEDLVALNLLRTLLSGSEDP 228 (444)
Q Consensus 155 ~~~p~~~~~~~~lg~~l~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~l~~~g~~~~A~~~~~~al~~~~~P 228 (444)
..+|....+|...+... ..+....+.+.|..+. .+.-..+..|...|..+...|++.+|..+|+.+++....|
T Consensus 74 kND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
No 311
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=30.12 E-value=1.6e+02 Score=27.79 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhc-----CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhc
Q 013375 336 AHYYAKMLLKLE-----GGSNLKGWLLMARILSAQKRYEDAETILNAALDQT 382 (444)
Q Consensus 336 A~~~~~~al~l~-----P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~ 382 (444)
++..|.+|+... ..+ .--|..+|..+.+.+++.||+..+-.|-..-
T Consensus 276 ~l~L~~~AI~sa~~yY~n~H-vYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi 326 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHH-IYPYTYLGGYYYRKKKYYEAIASWVDAGYVA 326 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCC-SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCC-ccchhhhhhhhhhcchHHHHHHHHHHHHHHH
Confidence 666666666543 233 3567778888888888888888887776543
No 312
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=29.47 E-value=2.8e+02 Score=25.67 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=20.1
Q ss_pred HHHHHHHhCChHHHHHHHHHHhCc
Q 013375 69 LPELWKLADAPRETIMSYRRALLP 92 (444)
Q Consensus 69 l~~~~~~~g~~~eA~~~y~~aL~~ 92 (444)
++.-+...|.++.|...+.+=+-.
T Consensus 34 laadhvAAGsFetAm~lLnrQvGi 57 (325)
T 3mv2_A 34 LPAVLVAAGAFDAAVQALSKQVGV 57 (325)
T ss_dssp SHHHHHHTTCHHHHHHHHHHHHCB
T ss_pred cHHHHHHccCHHHHHHHHHHHhCc
Confidence 345677899999999999998877
No 313
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=28.46 E-value=61 Score=31.76 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcC--CC-------ChHHHHHHHHHHHHccCHHHHHHHHHHHHhh-cC
Q 013375 322 RLSLEYAEQRKLNAAHYYAKMLLKLEG--GS-------NLKGWLLMARILSAQKRYEDAETILNAALDQ-TG 383 (444)
Q Consensus 322 ~lg~~~~~~g~~~~A~~~~~~al~l~P--~~-------~~~~~~~la~~l~~~g~~~eA~~~~~~al~~-~P 383 (444)
.|-.+|.+.|+..-+...++..-.-.+ .. -+...+.+|.+++.+++|.+|...+..|+.. .|
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCC
Confidence 344556667777766666654422221 10 0234445566666666666666666666655 55
No 314
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=26.64 E-value=1.8e+02 Score=28.11 Aligned_cols=59 Identities=7% Similarity=0.020 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhc-----CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhhcCC----CCcHHHHHHH
Q 013375 335 AAHYYAKMLLKLE-----GGSNLKGWLLMARILSAQKRYEDAETILNAALDQTGK----WEQGELLRTK 394 (444)
Q Consensus 335 ~A~~~~~~al~l~-----P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~~P~----~~~~~~~~~l 394 (444)
.++..|++|+... ..+ +-.|..+|..+...++|.+|+..+-.|-..--+ -++.++|..+
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~h-vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~ 349 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEH-IYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEF 349 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCC-SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCc-ccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHH
Confidence 4566777777643 234 467888899999999999999999887654221 1455665433
No 315
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=26.53 E-value=1.4e+02 Score=29.15 Aligned_cols=85 Identities=8% Similarity=-0.078 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhhhcccc-----------h----------HHHHHHHHHHHHHHHhhh---cCCCCCCCC--------
Q 013375 6 ISLLLEAIFLKAKCLQGLGR-----------F----------KEAAQSCKVILDIVESSF---AEGFPENLG-------- 53 (444)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~g~-----------~----------~~A~~~~~~~l~~~~~~~---~~~~~~~~~-------- 53 (444)
-++..|+++.+|.+|+.+=+ . ....+.|..+++.++.+. |...+....
T Consensus 108 ~~~~gEa~flRA~~yf~L~~~fG~VP~~~~~~~~~~~~~~~r~~~~evy~~I~~DL~~A~~~Lp~~~~~~~~~~~~~~~~ 187 (478)
T 3hdx_A 108 KYDIAQVRALRAFAYFYMVRIWGDVPLVTYSYDNGTFPSMPRTDAQTVLSYAKAELLTAIEDLPYQYGTQTNLYYGSYGA 187 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSBCCCCSCCCTTCCCCCCCBCHHHHHHHHHHHHHHHHHHCCSSCCCSSSCBTTBCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCeeeeccCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhCcccccCCcccccccccc
Confidence 46889999999999998722 1 013566677766554433 221111000
Q ss_pred cc--ccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhCc
Q 013375 54 AD--CKLQETLNRAVELLPELWKLADAPRETIMSYRRALLP 92 (444)
Q Consensus 54 ~~--~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL~~ 92 (444)
.+ .++ +-..|..+++.+|+-.|++++|+...++++..
T Consensus 188 ~~~~~r~--tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 188 QWQGKLF--NKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp GGTTTSC--CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccc--cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 00 011 12357788999999999999999999999863
No 316
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=24.23 E-value=1.7e+02 Score=28.61 Aligned_cols=57 Identities=11% Similarity=0.028 Sum_probs=42.1
Q ss_pred HHHhhHHHHHHHHHHHHHhhCC--C--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-cCCC
Q 013375 293 DRATRQAKALQALVSAARSTNM--R--------DLSILYRLSLEYAEQRKLNAAHYYAKMLLKL-EGGS 350 (444)
Q Consensus 293 ~~~~~~~eA~~~~~~al~~~~P--~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~ 350 (444)
.+.++..-+...++..- ...+ . -..-+|++|..+..++++.+|.+.+..|+.. -|..
T Consensus 187 Fkl~~~~lckni~k~i~-~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 187 FRIESPQLCSNIFKNFQ-PKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHSSCCTTHHHHHHTHH-HHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHcCCHHHHHHHHHHhc-cCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 45566666666665554 3332 1 1245689999999999999999999999998 8865
No 317
>3l22_A SUSD superfamily protein; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.05A {Bacteroides fragilis}
Probab=23.82 E-value=54 Score=31.87 Aligned_cols=83 Identities=16% Similarity=0.055 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhhhhcc----c----------c------h----H-------HHHHHHHHHHHHHHhhhcCCCCCCCC-
Q 013375 6 ISLLLEAIFLKAKCLQGL----G----------R------F----K-------EAAQSCKVILDIVESSFAEGFPENLG- 53 (444)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~----g----------~------~----~-------~A~~~~~~~l~~~~~~~~~~~~~~~~- 53 (444)
-++..|+++.+|.+|+.+ | . . + ...+.|..+++.++.+ . ..|....
T Consensus 114 ~~~~gEa~flRA~~yf~L~~~fG~~y~~~~~~~~VPl~~~~~~~~~~~~~~r~t~~evy~~I~~DL~~A-~-~Lp~~~~~ 191 (441)
T 3l22_A 114 DRYVQEAKFVRALAYYYLNNLYPTPYSVNPDAKSVPLRLTAEAGTENNNMPRSTVKQIYEHILSDLENI-S-ALDTEVNT 191 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSCCTTTCTTCBCCCCCCSCCCSSTTCCCCCCBHHHHHHHHHHHTSCC-T-TSBCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcceEecccccccccCCCCCCHHHHHHHHHHHHHHH-h-cccccccc
Confidence 467899999999999987 4 1 0 0 1367788888776655 2 2333211
Q ss_pred ccccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q 013375 54 ADCKLQETLNRAVELLPELWKLADAPRETIMSYRRAL 90 (444)
Q Consensus 54 ~~~~l~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~aL 90 (444)
....-..+-..|..+++.+|+-.|++++|++..+.++
T Consensus 192 ~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi 228 (441)
T 3l22_A 192 YTGVTHATQAAANMLKMRVYMAMNEWDKAITAGELVT 228 (441)
T ss_dssp HHHHHSCBHHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred CccCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 0000001123577889999999999999999999998
No 318
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=23.27 E-value=45 Score=24.55 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=27.3
Q ss_pred HHHHHHhhhhcc---cchHHHHHHHHHHHHHHHhhh
Q 013375 12 AIFLKAKCLQGL---GRFKEAAQSCKVILDIVESSF 44 (444)
Q Consensus 12 ~~~~~g~~~~~~---g~~~~A~~~~~~~l~~~~~~~ 44 (444)
.+.++|+..... |+-++|++.|++-|+.+++-.
T Consensus 18 ~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi 53 (89)
T 3eab_A 18 EYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGI 53 (89)
T ss_dssp HHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhc
Confidence 355789999999 999999999999988776643
No 319
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=23.10 E-value=1.5e+02 Score=30.56 Aligned_cols=53 Identities=11% Similarity=-0.068 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHH
Q 013375 317 LSILYRLSLEYAEQRKLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYED 370 (444)
Q Consensus 317 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~e 370 (444)
.+.....|......|+|.-|.+....++..+|++ .++...++.+|..+|...+
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~-~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDN-RAARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhcc
Confidence 3455666777778999999999999999999999 5999999998887775443
No 320
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=23.07 E-value=2.4e+02 Score=27.16 Aligned_cols=45 Identities=4% Similarity=-0.022 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhc-----CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 013375 336 AHYYAKMLLKLE-----GGSNLKGWLLMARILSAQKRYEDAETILNAALDQ 381 (444)
Q Consensus 336 A~~~~~~al~l~-----P~~~~~~~~~la~~l~~~g~~~eA~~~~~~al~~ 381 (444)
++..|.+|+... ..+ .--|..+|..+.+.+++.||+..+-.|-..
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~H-vYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEH-IYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCC-SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCC-ccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 555555555432 223 356677888888888888888888777654
No 321
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=22.90 E-value=3.9e+02 Score=23.44 Aligned_cols=175 Identities=17% Similarity=0.093 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHC-CCchHHHHHHHHhhc---CCCCCCChHHH-
Q 013375 161 PSILDHLSFAFSIAGDLSSLATQIEELLPGIIN-RKERYHILALCYYGA-GEDLVALNLLRTLLS---GSEDPKCLPAL- 234 (444)
Q Consensus 161 ~~~~~~lg~~l~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~-g~~~~A~~~~~~al~---~~~~P~~~~a~- 234 (444)
.+-...++.+..+.++|++.+++..++...+++ +.+-.+-|..+|-.. |....++..+....+ .+-+++.....
T Consensus 8 re~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~~~~i~ 87 (236)
T 3iqu_A 8 RASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKGPEVR 87 (236)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCSHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 344456677777888888888888888777665 455566666666542 555555555533221 01122222111
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC----cchhhhHHHH--HhhhhhhhhhhhhhchHHHHhhHHHHHHHHHHH
Q 013375 235 LIASKICGEYPDLAEEGATFASRALECLGDG----CDQMESTANC--LLGISLSAQSKVAITDFDRATRQAKALQALVSA 308 (444)
Q Consensus 235 ~~~~~~~~~~~~~~~eA~~~~~~al~~~~~~----~~~~~~~a~~--~lg~~~~~~~~~~~~~~~~~~~~~eA~~~~~~a 308 (444)
-+...+ -+|=...+..++.+++.. .....+.+++ ..|..|...+.....+ .+..-.+.|..+|++|
T Consensus 88 ~yr~ki-------e~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~-~r~~~~e~a~~aY~~A 159 (236)
T 3iqu_A 88 EYREKV-------ETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGD-DKKRIIDSARSAYQEA 159 (236)
T ss_dssp HHHHHH-------HHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHH
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHH
Confidence 000001 112233444444443221 0011122222 2444444433332211 2333356677777776
Q ss_pred HHh-----hCCCCHHHH---HHHHHHHHH-cCCHHHHHHHHHHHH
Q 013375 309 ARS-----TNMRDLSIL---YRLSLEYAE-QRKLNAAHYYAKMLL 344 (444)
Q Consensus 309 l~~-----~~P~~~~a~---~~lg~~~~~-~g~~~~A~~~~~~al 344 (444)
. . +.|.||--+ .|.+..|++ +++.++|....++|+
T Consensus 160 ~-~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 160 M-DISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp H-HHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred H-HHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5 3 567776422 344445453 477777777666664
No 322
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=21.54 E-value=4.2e+02 Score=23.38 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHH-CCCchHHHHHHH
Q 013375 164 LDHLSFAFSIAGDLSSLATQIEELLPGIIN-RKERYHILALCYYG-AGEDLVALNLLR 219 (444)
Q Consensus 164 ~~~lg~~l~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~-~g~~~~A~~~~~ 219 (444)
...++.+..+.++|++.+++..+++..++. +.+-.+-|..+|-. .|....+++.+.
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiis 64 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVIS 64 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 445677777888888888888888877665 45556666666654 255555555553
No 323
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=20.98 E-value=4.7e+02 Score=24.76 Aligned_cols=97 Identities=10% Similarity=-0.044 Sum_probs=62.8
Q ss_pred HHHHHhhCCC------CHHH---HHHHHHHHHHcC---CHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHccCHHHHHH
Q 013375 306 VSAARSTNMR------DLSI---LYRLSLEYAEQR---KLNAAHYYAKMLLKLEGGSNLKGWLLMARILSAQKRYEDAET 373 (444)
Q Consensus 306 ~~al~~~~P~------~~~a---~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~~~~~~la~~l~~~g~~~eA~~ 373 (444)
--+. .+||. +.+. ...|=++++..| +|.-|+-.+-..-++.|.. ||. .++.
T Consensus 216 a~Vs-aiNPsi~~~tDs~El~~LQq~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~---------------gr~-~~l~ 278 (472)
T 3re2_A 216 SIIS-SINPNINHTTDSIQLSQLQQELLWLLYDMGHIKTYPMAIANLGDLEEISPTP---------------GRP-PAEE 278 (472)
T ss_dssp HHHH-TCCCEEETTEECHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCT---------------TSC-CHHH
T ss_pred HHHH-hcCCccccccchHHHHHHHHHHHHHHHhccchhhCchhhcchhhHHhcCCCC---------------CCC-CHHH
Confidence 3344 67775 3332 356677777776 5667887777777777763 221 2555
Q ss_pred HHHHHHhhcC---CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 013375 374 ILNAALDQTG---KWEQGELLRTKAKVQLVQGQLKGAVETYTHLLAALQ 419 (444)
Q Consensus 374 ~~~~al~~~P---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 419 (444)
.|.+|+...- .+.+.--|..+|..+.+.+++.+|+.+|..+-..-.
T Consensus 279 L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~ 327 (472)
T 3re2_A 279 LFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAG 327 (472)
T ss_dssp HHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHH
Confidence 6666664321 114555677788899999999999988887765443
No 324
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.95 E-value=4.2e+02 Score=24.99 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhh---cCCCC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 013375 354 GWLLMARILSAQKRYEDAETILNAALDQ---TGKWE---QGELLRTKAKVQLVQGQLKGAVETYTHLLAA 417 (444)
Q Consensus 354 ~~~~la~~l~~~g~~~eA~~~~~~al~~---~P~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 417 (444)
++..++..+...|+.++|...++++-.. .++++ +...+...+..+...+++.++-...-..+..
T Consensus 129 i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 129 IDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4455666777777777777777766532 11101 2344445566666667776554444444443
No 325
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.85 E-value=1.3e+02 Score=21.44 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=13.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Q 013375 394 KAKVQLVQGQLKGAVETYTHLLAALQVQTK 423 (444)
Q Consensus 394 la~~~~~~g~~~~A~~~~~~al~l~~~~~~ 423 (444)
+|.=+...|+|+.|+.+|+.++..-.++-.
T Consensus 18 ~ARe~Al~GnYdta~~yY~g~~~qI~k~l~ 47 (78)
T 2rpa_A 18 LAREYALLGNYDSAMVYYQGVLDQMNKYLY 47 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555444444333
No 326
>3ihv_A SUSD homolog; NP_813570.1, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.60 E-value=1.7e+02 Score=28.93 Aligned_cols=85 Identities=14% Similarity=0.068 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhhhhcccc----------hH------------HHHHHHHHHHHHHHhhh---cCCCCCC-CC-ccccH
Q 013375 6 ISLLLEAIFLKAKCLQGLGR----------FK------------EAAQSCKVILDIVESSF---AEGFPEN-LG-ADCKL 58 (444)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~g~----------~~------------~A~~~~~~~l~~~~~~~---~~~~~~~-~~-~~~~l 58 (444)
-++..|+++.+|.+|+.+=+ .. ...+.|..+++.++.+. |...+.. .+ ...++
T Consensus 114 ~~~~aEa~flRA~~Yf~L~~~~G~VPl~~~~~~~~~~~~~~~r~~~~ev~~~I~~DL~~A~~~Lp~~~~~~~~g~~~~r~ 193 (535)
T 3ihv_A 114 TLYIAEARALRGMFYFELVRRFGNVVLMTSTQMSNQNPATYVQSAPEKVYEYIEDDLLYACDILPYATDDQYRESNDYRF 193 (535)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCCCSHHHHTSCGGGCCCCCHHHHHHHHHHHHHHHHHHCCCTTTCCSSSCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCceeeCCcCCCccccccCCCCCHHHHHHHHHHHHHHHHHhCCcccccccccccccCc
Confidence 36789999999999998732 10 12466777776554433 2211110 01 00011
Q ss_pred HHHHHHHHHHHHHHHHHh--------CChHHHHHHHHHHhCc
Q 013375 59 QETLNRAVELLPELWKLA--------DAPRETIMSYRRALLP 92 (444)
Q Consensus 59 ~~~~~~a~~~l~~~~~~~--------g~~~eA~~~y~~aL~~ 92 (444)
+-..|..+++.+|+-. +++++|+...+.++..
T Consensus 194 --tk~aA~allarvyL~~a~~~~~~~~~~~~A~~~a~~vi~~ 233 (535)
T 3ihv_A 194 --SKGAALGLLTKVYATWAGYPVKDESKWEAAAKTARILVES 233 (535)
T ss_dssp --CHHHHHHHHHHHHHHHHSTTTCCTTHHHHHHHHHHHHHHT
T ss_pred --cHHHHHHHHHHHHHHccCCcccCHHHHHHHHHHHHHHHhc
Confidence 1235777888888876 5799999999999875
Done!