BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013376
(444 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 106/236 (44%), Gaps = 46/236 (19%)
Query: 89 EDVTFCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAG 148
ED +F V+DGH RV + LL + ++ + GK+ G+ +L
Sbjct: 53 EDWSFFAVYDGHA------GSRVANYCSTHLLEHITTNEDFR-AAGKS---GSALELSV- 101
Query: 149 DSEKDGPAEDKSNSLWREAYLKAYKSMDKELKSHPNLDCFCSGSTAVTIVKQVWQGALHS 208
++ K+G ++ L + Y++ + + + SGSTAV ++ H
Sbjct: 102 ENVKNGI---RTGFLKIDEYMRNFSDLRNGMDR--------SGSTAVGVMIS----PKHI 146
Query: 209 LHLQFGEAERIKRCKGRV-FALQD-EPEVPRVWLPFDDAPG----------LAMARAFGD 256
+ G++ + G+V F+ QD +P PR +A G LA++RA GD
Sbjct: 147 YFINCGDSRAVLYRNGQVCFSTQDHKPCNPREKERIQNAGGSVMIQRVNGSLAVSRALGD 206
Query: 257 FCLK--------EYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEIVSS 304
+ K E V PE L + D+FI+LA DG+WDV+SNEE+ E V S
Sbjct: 207 YDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILAXDGIWDVMSNEELCEYVKS 262
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 343
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 95/223 (42%), Gaps = 28/223 (12%)
Query: 93 FCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQ----SRQNGPGK---------TCFN 139
F GV+DGHG GH VA RD L L + + R G G+ +CF
Sbjct: 70 FFGVYDGHG--GHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFL 127
Query: 140 GNTKKLEAGDSEKDGPAEDKSNSLWREAYLKAYKSMDKELKSHPNLDCFCSGSTAVTIV- 198
++E + DK + + + SH + C S AV
Sbjct: 128 TVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVS-NCGDSRAVLFRG 186
Query: 199 KQVWQGALHSLHLQFGEAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFC 258
K+ ++ + E RI+ G+V Q RV+ LAM+R+ GD
Sbjct: 187 KEAMPLSVDHKPDREDEYARIENAGGKVIQWQG----ARVF------GVLAMSRSIGDRY 236
Query: 259 LKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEI 301
LK Y VI PE + + D+ ++LASDG+WDV++N+EV EI
Sbjct: 237 LKPY-VIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEI 278
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
Length = 341
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 95/223 (42%), Gaps = 28/223 (12%)
Query: 93 FCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQ----SRQNGPGK---------TCFN 139
F GV+DGHG GH VA RD L L + + R G G+ +CF
Sbjct: 68 FFGVYDGHG--GHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFL 125
Query: 140 GNTKKLEAGDSEKDGPAEDKSNSLWREAYLKAYKSMDKELKSHPNLDCFCSGSTAVTIV- 198
++E + DK + + + SH + C S AV
Sbjct: 126 TVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVS-NCGDSRAVLFRG 184
Query: 199 KQVWQGALHSLHLQFGEAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFC 258
K+ ++ + E RI+ G+V Q RV+ LAM+R+ GD
Sbjct: 185 KEAMPLSVDHKPDREDEYARIENAGGKVIQWQG----ARVF------GVLAMSRSIGDRY 234
Query: 259 LKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEI 301
LK Y VI PE + + D+ ++LASDG+WDV++N+EV EI
Sbjct: 235 LKPY-VIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEI 276
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 321
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 96/228 (42%), Gaps = 38/228 (16%)
Query: 93 FCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQ---------SRQNGPGK-------- 135
F GV+DGHG GH VA RD L F LA + R G G+
Sbjct: 53 FFGVYDGHG--GHKVADYCRDRL-----HFALAEEIERIKDELCKRNTGEGRQVQWDKVF 105
Query: 136 -TCFNGNTKKLEAGDSEKDGPAEDKSNSLWREAYLKAYKSMDKELKSHPNLDCFCSGSTA 194
+CF ++E + DK + + + SH + C S A
Sbjct: 106 TSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVS-NCGDSRA 164
Query: 195 VTIV-KQVWQGALHSLHLQFGEAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARA 253
V K+ ++ + E RI+ G+V Q RV+ LAM+R+
Sbjct: 165 VLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQG----ARVF------GVLAMSRS 214
Query: 254 FGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEI 301
GD LK Y VI PE + + D+ ++LASDG+WDV++N+EV EI
Sbjct: 215 IGDRYLKPY-VIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEI 261
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 337
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 96/228 (42%), Gaps = 38/228 (16%)
Query: 93 FCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQ---------SRQNGPGK-------- 135
F GV+DGHG GH VA RD L F LA + R G G+
Sbjct: 64 FFGVYDGHG--GHKVADYCRDRL-----HFALAEEIERIKDELCKRNTGEGRQVQWDKVF 116
Query: 136 -TCFNGNTKKLEAGDSEKDGPAEDKSNSLWREAYLKAYKSMDKELKSHPNLDCFCSGSTA 194
+CF ++E + DK + + + SH + C S A
Sbjct: 117 TSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVS-NCGDSRA 175
Query: 195 VTIV-KQVWQGALHSLHLQFGEAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARA 253
V K+ ++ + E RI+ G+V Q RV+ LAM+R+
Sbjct: 176 VLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQG----ARVF------GVLAMSRS 225
Query: 254 FGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEI 301
GD LK Y VI PE + + D+ ++LASDG+WDV++N+EV EI
Sbjct: 226 IGDRYLKPY-VIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEI 272
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 340
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 96/228 (42%), Gaps = 38/228 (16%)
Query: 93 FCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQ---------SRQNGPGK-------- 135
F GV+DGHG GH VA RD L F LA + R G G+
Sbjct: 67 FFGVYDGHG--GHKVADYCRDRL-----HFALAEEIERIKDELSKRNTGEGRQVQWDKVF 119
Query: 136 -TCFNGNTKKLEAGDSEKDGPAEDKSNSLWREAYLKAYKSMDKELKSHPNLDCFCSGSTA 194
+CF ++E + DK + + + SH + C S A
Sbjct: 120 TSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSN-CGDSRA 178
Query: 195 VTIV-KQVWQGALHSLHLQFGEAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARA 253
V K+ ++ + E RI+ G+V Q RV+ LAM+R+
Sbjct: 179 VLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQG----ARVF------GVLAMSRS 228
Query: 254 FGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEI 301
GD LK Y VI PE + + D+ ++LASDG+WDV++N+EV EI
Sbjct: 229 IGDRYLKPY-VIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEI 275
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 350
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 96/228 (42%), Gaps = 38/228 (16%)
Query: 93 FCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQ---------SRQNGPGK-------- 135
F GV+DGHG GH VA RD L F LA + R G G+
Sbjct: 77 FFGVYDGHG--GHKVADYCRDRL-----HFALAEEIERIKDELCKRNTGEGRQVQWDKVF 129
Query: 136 -TCFNGNTKKLEAGDSEKDGPAEDKSNSLWREAYLKAYKSMDKELKSHPNLDCFCSGSTA 194
+CF ++E + DK + + + SH + C S A
Sbjct: 130 TSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVS-NCGDSRA 188
Query: 195 VTIV-KQVWQGALHSLHLQFGEAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARA 253
V K+ ++ + E RI+ G+V Q RV+ LAM+R+
Sbjct: 189 VLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQG----ARVF------GVLAMSRS 238
Query: 254 FGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEI 301
GD LK Y VI PE + + D+ ++LASDG+WDV++N+EV EI
Sbjct: 239 IGDRYLKPY-VIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEI 285
>pdb|2I44|A Chain A, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
pdb|2I44|B Chain B, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
pdb|2I44|C Chain C, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
Length = 324
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 110/281 (39%), Gaps = 59/281 (20%)
Query: 64 SCIFTQQGRKGINQDAMIVWEDFMS--EDVTFCGVFDGHGPHGHLVARRVRDALPIKLLS 121
+ IFT G + +D + + +D F GVFDG G + V+D + +L+S
Sbjct: 24 AAIFTDIGGRKHQEDRFTLCPQLVPGRDDCAFFGVFDGTV--GDFASENVKDLVVPQLIS 81
Query: 122 FLLASQSRQNGPGKTCFNGNTKKLEAGDSEKDGPA---EDKSNSLWREAYLKAYKSMDKE 178
+ T+ L + D PA ++K L +A YK+ D E
Sbjct: 82 -------------SPAWQEVTEXLRS-----DVPATEVDEKLPQLLDQAVDDXYKNADNE 123
Query: 179 L-KSHPNLDCFCSGSTAVTIVKQ---VWQGALHSLHLQFG-------------------- 214
L K L+ + ST+VT V V G L + G
Sbjct: 124 LVKXCEQLNKDYASSTSVTAVLAKGFVAVGHLGDSRIAXGVETPNGLNCEFLTVDHKPDX 183
Query: 215 --EAERIKRCKGRVFALQDEPEVPRVW---LPFDDAPG-----LAMARAFGDFCLKEYGV 264
E RI R G V L + P + F + G L +RAFG LK YG+
Sbjct: 184 PHEKLRIXRNGGSVEYLHNHNNKPFIRGGDFSFRKSRGEQPXQLQYSRAFGGKDLKXYGL 243
Query: 265 ISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEIVSSA 305
+ P+ +T + + +LA+DG+WDV S + VEI A
Sbjct: 244 SNQPDVRVVRVTPQHRVXILATDGLWDVXSAAQAVEIAXQA 284
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 94/225 (41%), Gaps = 49/225 (21%)
Query: 93 FCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAGDSEK 152
F GV+DGHG G VA R+ + + L ++ + + C
Sbjct: 61 FFGVYDGHG--GSQVANYCRERMHLALTEEIVKEKP------EFC--------------- 97
Query: 153 DGPAEDKSNSLWREAYLKAYKSMDKELKSHPNLDCFCSGSTAVTIVKQVWQGALHSLHLQ 212
DG D W++A ++ +D E+++ + ++ V +V H
Sbjct: 98 DG---DTWQEKWKKALFNSFMRVDSEIETVAHAPETVGSTSVVAVVFPT-----HIFVAN 149
Query: 213 FGEAERIKRCKGRV---FALQDEPEVPRVWLPFDDAPG-------------LAMARAFGD 256
G++ R C+G+ ++ +P+ + A G LAM+R+ GD
Sbjct: 150 CGDS-RAVLCRGKTPLALSVDHKPDRDDEAARIEAAGGKVIRWNGARVFGVLAMSRSIGD 208
Query: 257 FCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEI 301
LK VI PE + D ++LASDG+WDV++NEEV ++
Sbjct: 209 RYLKP-SVIPDPEVTSVRRVKEDDCLILASDGLWDVMTNEEVCDL 252
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 14/125 (11%)
Query: 215 EAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSH-R 273
E ERIK+C G F + P V LAM R+ GD LK GVI+ PE +
Sbjct: 148 EKERIKKCGG--FVAWNSLGQPHV------NGRLAMTRSIGDLDLKTSGVIAEPETKRIK 199
Query: 274 LLTDRDQFIVLASDGVWDVLSNEEVVEIVSSAPTRSSAARILVDAAAREWKLKYPTSKMD 333
L D F+VL +DG+ +++++E+ + V+ + AA A E ++Y T
Sbjct: 200 LHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNEAAH-----AVTEQAIQYGTEDNS 254
Query: 334 DCAVV 338
VV
Sbjct: 255 TAVVV 259
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 14/125 (11%)
Query: 215 EAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSH-R 273
E ERIK+C G F + P V LAM R+ GD LK GVI+ PE +
Sbjct: 262 EKERIKKCGG--FVAWNSLGQPHV------NGRLAMTRSIGDLDLKTSGVIAEPETKRIK 313
Query: 274 LLTDRDQFIVLASDGVWDVLSNEEVVEIVSSAPTRSSAARILVDAAAREWKLKYPTSKMD 333
L D F+VL +DG+ +++++E+ + V+ + AA A E ++Y T
Sbjct: 314 LHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNEAAH-----AVTEQAIQYGTEDNS 368
Query: 334 DCAVV 338
VV
Sbjct: 369 TAVVV 373
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 248 LAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEI 301
LAM+R+ GD LK +I PE + D ++LASDGVWDV+++EE E+
Sbjct: 194 LAMSRSIGDRYLKP-SIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEM 246
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 248 LAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEI 301
LAM+R+ GD LK +I PE + D ++LASDGVWDV+++EE E+
Sbjct: 206 LAMSRSIGDRYLKP-SIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEM 258
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 98/227 (43%), Gaps = 55/227 (24%)
Query: 93 FCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAGDS-- 150
F GV+DGHG G VA R+ + + L A + + P L GD+
Sbjct: 54 FFGVYDGHG--GSQVANYCRERMHLAL-----AEEIAKEKP----------MLSDGDTWL 96
Query: 151 EKDGPAEDKSNSLWREAYLKAYKSMDKELKSHPNLDCFCSGSTAVTIVKQVWQGALHSLH 210
EK W++A ++ +D E++S + GST+V V V+ H
Sbjct: 97 EK-----------WKKALFNSFLRVDSEIES---VAPETVGSTSVVAV--VFPS--HIFV 138
Query: 211 LQFGEAERIKRCKGRV---FALQDEPEVPRVWLPFDDAPG-------------LAMARAF 254
G++ R C+G+ ++ +P+ + A G LAM+R+
Sbjct: 139 ANCGDS-RAVLCRGKTALPLSVDHKPDREDEAARIEAAGGKVIQWNGARVFGVLAMSRSI 197
Query: 255 GDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEI 301
GD LK +I PE + D ++LASDGVWDV+++EE E+
Sbjct: 198 GDRYLKP-SIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEM 243
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
PHOSPHATASE 2C AT 2 A Resolution
Length = 382
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 27/137 (19%)
Query: 190 SGSTAVTIVKQVWQGALHSLHLQFGEAERIKRCKGR---VFALQDEPEVPRVWLPFDDAP 246
SGSTAV ++ H+ + G++ R C+ R F +P P +A
Sbjct: 125 SGSTAVGVLIS----PQHTYFINCGDS-RGLLCRNRKVHFFTQDHKPSNPLEKERIQNAG 179
Query: 247 G----------LAMARAFGDF---CLKEYG----VISIPEFSHRL--LTDRDQFIVLASD 287
G LA++RA GDF C+ G ++S H + + DQFI+LA D
Sbjct: 180 GSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACD 239
Query: 288 GVWDVLSNEEVVEIVSS 304
G+WDV+ NEE+ + V S
Sbjct: 240 GIWDVMGNEELCDFVRS 256
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 3 Mm Of Mn2+
pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 10 Mm Of Mn2+
pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 1 Mm Of Mn2+
pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 10 Mm Of Mn2+
pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 1 Mm Of Mn2+
Length = 390
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 27/137 (19%)
Query: 190 SGSTAVTIVKQVWQGALHSLHLQFGEAERIKRCKGR---VFALQDEPEVPRVWLPFDDAP 246
SGSTAV ++ H+ + G++ R C+ R F +P P +A
Sbjct: 125 SGSTAVGVLIS----PQHTYFINCGDS-RGLLCRNRKVHFFTQDHKPSNPLEKERIQNAG 179
Query: 247 G----------LAMARAFGDF---CLKEYG----VISIPEFSHRL--LTDRDQFIVLASD 287
G LA++RA GDF C+ G ++S H + + DQFI+LA D
Sbjct: 180 GSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACD 239
Query: 288 GVWDVLSNEEVVEIVSS 304
G+WDV+ NEE+ + V S
Sbjct: 240 GIWDVMGNEELCDFVRS 256
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 237 RVWLPFDDAPGLAMARAFGDFCLK--------EYGVISIPEFSHRLLTDRDQFIVLASDG 288
RV L GL ++RA GD K E + ++P+ + D+F+VLA DG
Sbjct: 186 RVTLDGRVNGGLNLSRAIGDHGYKMNKSLPAEEQMISALPDIEKITVGPEDEFMVLACDG 245
Query: 289 VWDVLSNEEVVEIV 302
+W+ +++E+VV+ V
Sbjct: 246 IWNFMTSEQVVQFV 259
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
Length = 467
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 268 PEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEIV 302
PE ++ L +D+F+VLA+DG+W+ + ++VV IV
Sbjct: 328 PEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIV 362
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 268 PEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEIV 302
PE ++ L +D+F+VLA+DG+W+ + ++VV IV
Sbjct: 328 PEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIV 362
>pdb|4I43|B Chain B, Crystal Structure Of Prp8:aar2 Complex
Length = 1564
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 166 EAYLKAYKSMDKELKSHPNLDCFCSGSTAVTIVKQVWQGALHSLHLQFGEA 216
+AYLK + K+ S SGST T V W +L SL F EA
Sbjct: 450 KAYLKVSEEEIKKFDSRIRGILMASGSTTFTKVAAKWNTSLISLFTYFREA 500
>pdb|3ZEF|B Chain B, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
pdb|3ZEF|E Chain E, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
Length = 1531
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 166 EAYLKAYKSMDKELKSHPNLDCFCSGSTAVTIVKQVWQGALHSLHLQFGEA 216
+AYLK + K+ S SGST T V W +L SL F EA
Sbjct: 417 KAYLKVSEEEIKKFDSRIRGILMASGSTTFTKVAAKWNTSLISLFTYFREA 467
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,071,845
Number of Sequences: 62578
Number of extensions: 603060
Number of successful extensions: 1139
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1100
Number of HSP's gapped (non-prelim): 33
length of query: 444
length of database: 14,973,337
effective HSP length: 102
effective length of query: 342
effective length of database: 8,590,381
effective search space: 2937910302
effective search space used: 2937910302
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)