BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013377
(444 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 110/281 (39%), Gaps = 56/281 (19%)
Query: 98 LNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDF----N 153
LN+ + ++++G F V +DTGS W+P V+C GQ DF
Sbjct: 7 LNNEHVSYAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCDK---PRPGQSADFCKGKG 63
Query: 154 IYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATD 213
IY+P +S+TS + P+ + Y DG+ S G L +D
Sbjct: 64 IYTPKSSTTSQNL------------------GTPFYIGY-GDGSSSQGTLYKDT------ 98
Query: 214 EKQSKSVDSRISFGCGRVQTGSFLD---GAAPNGLFGLGM-------DKTSVPSILANQG 263
+ FG + F D + P G+ G+G D +VP L NQG
Sbjct: 99 ----------VGFGGASITKQVFADITKTSIPQGILGIGYKTNEAAGDYDNVPVTLKNQG 148
Query: 264 LIP-NSFSMCFGS--DGTGRISFGDKGSPGQGETPFSLRQTHP-TYNITITQVSVGGNAV 319
+I N++S+ S TG+I FG + ++ T IT+ + G +
Sbjct: 149 VIAKNAYSLYLNSPNAATGQIIFGGVDKAKYSGSLIAVPVTSDRELRITLNSLKAVGKNI 208
Query: 320 NFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETST 360
N + DSGT+ TYL I + F + K + T
Sbjct: 209 NGNIDVLLDSGTTITYLQQDVAQDIIDAFQAELKSDGQGHT 249
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 102/259 (39%), Gaps = 49/259 (18%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSS 164
+ ++++VG V +DTGS W+P VSC +GQ D N + + S
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWVPDSQVSC------QAGQGQDPNFCKNEGTYSPS 67
Query: 165 KVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRI 224
+ L N P+ + Y DGT S G +D I
Sbjct: 68 SSSSSQNL------------NSPFSIEY-GDGTTSQGTWYKDT----------------I 98
Query: 225 SFGCGRVQTGSFLD---GAAPNGLFGLGM-------DKTSVPSILANQGLI-PNSFSMCF 273
FG + F D + G+ G+G + +VP L NQG+I N++S+
Sbjct: 99 GFGGISITKQQFADVTSTSVDQGILGIGYKTHEAEGNYDNVPVTLKNQGIISKNAYSLYL 158
Query: 274 GSDG--TGRISFGDKGSPGQGETPFSLRQTHPT-YNITITQVSVGGNAVNFEFSAIFDSG 330
S +G+I FG + T +L T I + V V G ++N + + DSG
Sbjct: 159 NSRQATSGQIIFGGVDNAKYSGTLIALPVTSDNELRIHLNTVKVAGQSINADVDVLLDSG 218
Query: 331 TSFTYLNDPAYTQISETFN 349
T+ TYL Q+ FN
Sbjct: 219 TTITYLQQGVADQVISAFN 237
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 103/264 (39%), Gaps = 57/264 (21%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDF----NIYSPNTS 160
+ +++VG V +DTGS W+P V C + S Q DF Y P+ S
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQV---TYSDQTADFCKQKGTYDPSGS 70
Query: 161 STSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSV 220
S S + N P+++ Y DG+ S G L +D
Sbjct: 71 SASQDL------------------NTPFKIGY-GDGSSSQGTLYKDT------------- 98
Query: 221 DSRISFGCGRVQTGSFLD---GAAPNGLFGLGMDKT-------SVPSILANQGLIP-NSF 269
+ FG ++ D + G+ G+G +VP L QG+I N++
Sbjct: 99 ---VGFGGVSIKNQVLADVDSTSIDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAY 155
Query: 270 SMCFGS--DGTGRISFGDKGSPGQGETPFSLRQTHP-TYNITITQVSVGGNAVNFE-FSA 325
S+ S TG+I FG + + +L T I++ V V G +N +
Sbjct: 156 SLYLNSPDAATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINTDNVDV 215
Query: 326 IFDSGTSFTYLNDPAYTQISETFN 349
+ DSGT+ TYL QI + FN
Sbjct: 216 LLDSGTTITYLQQDLADQIIKAFN 239
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 102/264 (38%), Gaps = 57/264 (21%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDF----NIYSPNTS 160
+ +++VG V +DTGS W+P + C + S Q DF Y P+ S
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQV---TYSDQTADFCKQKGTYDPSGS 70
Query: 161 STSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSV 220
S S + N P+ + Y DG+ S G L +D
Sbjct: 71 SASQDL------------------NTPFSIGY-GDGSSSQGTLYKDT------------- 98
Query: 221 DSRISFGCGRVQTGSFLD---GAAPNGLFGLGMDKT-------SVPSILANQGLIP-NSF 269
+ FG ++ D + G+ G+G +VP L QG+I N++
Sbjct: 99 ---VGFGGVSIKNQVLADVDSTSIDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAY 155
Query: 270 SMCFGS--DGTGRISFGDKGSPGQGETPFSLRQTHP-TYNITITQVSVGGNAVNFE-FSA 325
S+ S TG+I FG + + +L T I++ V V G +N +
Sbjct: 156 SLYLNSPDSATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINTDNVDV 215
Query: 326 IFDSGTSFTYLNDPAYTQISETFN 349
+ DSGT+ TYL QI + FN
Sbjct: 216 LLDSGTTITYLQQDLADQIIKAFN 239
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 102/258 (39%), Gaps = 57/258 (22%)
Query: 98 LNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDF----N 153
L++ + +++VG V +DTGS W+P V C+ G DF
Sbjct: 7 LHNEAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKG---DFCKSAG 63
Query: 154 IYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATD 213
YSP +S TS + N + ++Y DG+ + G L +D + +
Sbjct: 64 SYSPASSRTSQNL------------------NTRFDIKY-GDGSYAKGKLYKDTVGIG-- 102
Query: 214 EKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLG--------MDKTSVPSILANQGLI 265
V R T +A G+ G+G D ++P L NQG+I
Sbjct: 103 -----GVSVRDQLFANVWST------SARKGILGIGFQSGEATEFDYDNLPISLRNQGII 151
Query: 266 -PNSFSMCFGS--DGTGRISFG--DKG--SPGQGETPFSLRQTHPTYNITITQVSVGGNA 318
++S+ S TG+I FG DK S + P + + + + V+V G
Sbjct: 152 GKAAYSLYLNSAEASTGQIIFGGIDKAKYSGSLVDLPIT---SEKKLTVGLRSVNVRGRN 208
Query: 319 VNFEFSAIFDSGTSFTYL 336
V+ + + DSGT+ +Y
Sbjct: 209 VDANTNVLLDSGTTISYF 226
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 99/251 (39%), Gaps = 60/251 (23%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTS 163
+Y V++G P F + DTGS W+ C +C SGQ Y PN SST
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC------GSGQT----KYDPNQSSTY 66
Query: 164 SKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSR 223
+ + Y DG+ ++G L +D ++L + ++++
Sbjct: 67 QA------------------DGRTWSISY-GDGSSASGILAKDNVNLGGLLIKGQTIE-- 105
Query: 224 ISFGCGRVQTGSFLDGAAPN-GLFGLGMDK-TSVPSI------LANQGLIPNS-FSMCFG 274
+ + SF G PN GL GLG D T+V + L +QGLI F + G
Sbjct: 106 ----LAKREAASFASG--PNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLG 159
Query: 275 SDGTGRI---------SFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSA 325
G S KGS T + + + IT+ + +VG + V F
Sbjct: 160 KAKNGGGGEYIFGGYDSTKFKGS----LTTVPIDNSRGWWGITVDRATVGTSTVASSFDG 215
Query: 326 IFDSGTSFTYL 336
I D+GT+ L
Sbjct: 216 ILDTGTTLLIL 226
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 88/370 (23%), Positives = 141/370 (38%), Gaps = 98/370 (26%)
Query: 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTS 163
LH+ N+ P + V +D + W+ C+ SS +
Sbjct: 22 LHWANLQKRTPLMQVPVLVDLNGNHLWVNCE----------------------QQYSSKT 59
Query: 164 SKVP-CNSTLCELQ--KQCPSAGSNCPYQVR----YLSDGTMST---------GFLVEDV 207
+ P C+ST C QC S CP R + G MST G L EDV
Sbjct: 60 YQAPFCHSTQCSRANTHQCLS----CPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDV 115
Query: 208 LHLATDEKQSKSVDSRIS-----FGCGRVQTGSFL--DGAAPN--GLFGLGMDKTSVPSI 258
L + + ++ + ++ F C SFL G N G+ GLG S+P+
Sbjct: 116 LAIHATQGSTQQLGPLVTVPQFLFSCAP----SFLVQKGLPRNTQGVAGLGHAPISLPNQ 171
Query: 259 LANQGLIPNSFSMCFGSDGT--GRISFGDKGSPGQGE-------------TPFSLRQTHP 303
LA+ + F+ C T G I FGD +P TP ++
Sbjct: 172 LASHFGLQRQFTTCLSRYPTSKGAIIFGD--APNNMRQFQNQDIFHDLAFTPLTIT-LQG 228
Query: 304 TYNITITQVSVGGNAVNFEFSAI-------------FDSGTSFTYLNDPAYTQISETF-N 349
YN+ + + + ++V F + I + T L Y ++ F
Sbjct: 229 EYNVRVNSIRINQHSV-FPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQ 287
Query: 350 SLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTM-KGGGPFF-VNDPIVIVSSEPK 407
L K+ + S + PF C+ + N+ N YP V+L M K GP + ++ ++V ++P
Sbjct: 288 QLPKQAQVKSVA--PFGLCF--NSNKIN-AYPSVDLVMDKPNGPVWRISGEDLMVQAQPG 342
Query: 408 GLYLYCLGVV 417
+ CLGV+
Sbjct: 343 ---VTCLGVM 349
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 98/263 (37%), Gaps = 54/263 (20%)
Query: 91 AGNDTYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSG 147
G+D N L +YT++++G P +F V LDTGS W+P C ++C
Sbjct: 1 GGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACF-------- 52
Query: 148 QVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDV 207
++S SS N T +Q S Y+S T+S G L
Sbjct: 53 ------LHSKYDHEASSSYKANGTEFAIQYGTGSLEG-------YISQDTLSIGDLT--- 96
Query: 208 LHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSIL------AN 261
+ + + + ++F G+ +G+ GLG D SV ++
Sbjct: 97 --IPKQDFAEATSEPGLTFAFGKF-----------DGILGLGYDTISVDKVVPPFYNAIQ 143
Query: 262 QGLI-PNSFSMCFG-----SDGTGRISFGD-KGSPGQGETPFSLRQTHPTYNITITQVSV 314
Q L+ F+ G ++ G +FG S +G+ + + + + + +
Sbjct: 144 QDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGL 203
Query: 315 GGNAVNFE-FSAIFDSGTSFTYL 336
G E A D+GTS L
Sbjct: 204 GDEYAELESHGAAIDTGTSLITL 226
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 98/263 (37%), Gaps = 54/263 (20%)
Query: 91 AGNDTYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSG 147
G+D N L +YT++++G P +F V LDTGS W+P C ++C
Sbjct: 1 GGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACF-------- 52
Query: 148 QVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDV 207
++S SS N T +Q S Y+S T+S G L
Sbjct: 53 ------LHSKYDHEASSSYKANGTEFAIQYGTGSLEG-------YISQDTLSIGDLT--- 96
Query: 208 LHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSIL------AN 261
+ + + + ++F G+ +G+ GLG D SV ++
Sbjct: 97 --IPKQDFAEATSEPGLTFAFGKF-----------DGILGLGYDTISVDKVVPPFYNAIQ 143
Query: 262 QGLI-PNSFSMCFG-----SDGTGRISFGD-KGSPGQGETPFSLRQTHPTYNITITQVSV 314
Q L+ F+ G ++ G +FG S +G+ + + + + + +
Sbjct: 144 QDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGL 203
Query: 315 GGNAVNFE-FSAIFDSGTSFTYL 336
G E A D+GTS L
Sbjct: 204 GDEYAELESHGAAIDTGTSLITL 226
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 98/263 (37%), Gaps = 54/263 (20%)
Query: 91 AGNDTYRLNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSG 147
G+D N L +YT++++G P +F V LDTGS W+P C ++C
Sbjct: 1 GGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACF-------- 52
Query: 148 QVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDV 207
++S SS N T +Q S Y+S T+S G L
Sbjct: 53 ------LHSKYDHEASSSYKANGTEFAIQYGTGSLEG-------YISQDTLSIGDLT--- 96
Query: 208 LHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSIL------AN 261
+ + + + ++F G+ +G+ GLG D SV ++
Sbjct: 97 --IPKQDFAEATSEPGLTFAFGKF-----------DGILGLGYDTISVDKVVPPFYNAIQ 143
Query: 262 QGLI-PNSFSMCFG-----SDGTGRISFGD-KGSPGQGETPFSLRQTHPTYNITITQVSV 314
Q L+ F+ G ++ G +FG S +G+ + + + + + +
Sbjct: 144 QDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGL 203
Query: 315 GGNAVNFE-FSAIFDSGTSFTYL 336
G E A D+GTS L
Sbjct: 204 GDEYAELESHGAAIDTGTSLITL 226
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 28/171 (16%)
Query: 200 TGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI- 258
TGF+ ED++ + S V+ F FL G NG+ GL + PS
Sbjct: 78 TGFVGEDLVTIPKGFNTSFLVNIATIFESENF----FLPGIKWNGILGLAYATLAKPSSS 133
Query: 259 -------LANQGLIPNSFSMCF----------GSDGTGRISFGDKGSPGQGETPFSLRQT 301
L Q IPN FSM G++G + G + S +G+ ++ +
Sbjct: 134 LETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKE 193
Query: 302 HPTYNITITQVSVGGNAVNFEF------SAIFDSGTSFTYLNDPAYTQISE 346
Y I I ++ +GG ++N + AI DSGT+ L + + E
Sbjct: 194 EWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVE 244
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 95/250 (38%), Gaps = 52/250 (20%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQVIDFNIY 155
N L ++ + +G PA F V DTGS W+P C ++C + N +
Sbjct: 8 NYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTN-----------HNRF 56
Query: 156 SPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEK 215
+P SST Q S + Y G+M TG L D + +
Sbjct: 57 NPEDSST--------------YQSTSETVSITY-----GTGSM-TGILGYDTVQVG---- 92
Query: 216 QSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGM------DKTSVPSILANQGLIPNS- 268
D+ FG + GSFL A +G+ GL T V + NQGL+
Sbjct: 93 --GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDL 150
Query: 269 FSMCFGSD---GTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323
FS+ +D G+ I G S G + + IT+ +++ G A+
Sbjct: 151 FSVYLSADDQSGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGEAIACAEGC 210
Query: 324 SAIFDSGTSF 333
AI D+GTS
Sbjct: 211 QAIVDTGTSL 220
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 95/250 (38%), Gaps = 52/250 (20%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQVIDFNIY 155
N L ++ + +G PA F V DTGS W+P C ++C + N +
Sbjct: 8 NYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTN-----------HNRF 56
Query: 156 SPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEK 215
+P SST Q S + Y G+M TG L D + +
Sbjct: 57 NPEDSST--------------YQSTSETVSITY-----GTGSM-TGILGYDTVQVGGIS- 95
Query: 216 QSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGM------DKTSVPSILANQGLIPNS- 268
D+ FG + GSFL A +G+ GL T V + NQGL+
Sbjct: 96 -----DTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDL 150
Query: 269 FSMCFGSD---GTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323
FS+ +D G+ I G S G + + IT+ +++ G A+
Sbjct: 151 FSVYLSADDQSGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGEAIACAEGC 210
Query: 324 SAIFDSGTSF 333
AI D+GTS
Sbjct: 211 QAIVDTGTSL 220
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 98/251 (39%), Gaps = 60/251 (23%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTS 163
+Y V++G P F + DTGS W+ C +C S Q Y PN SST
Sbjct: 17 YYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC------GSRQT----KYDPNQSSTY 66
Query: 164 SKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSR 223
+ + Y DG+ ++G L +D ++L + ++++
Sbjct: 67 QA------------------DGRTWSISY-GDGSSASGILAKDNVNLGGLLIKGQTIE-- 105
Query: 224 ISFGCGRVQTGSFLDGAAPN-GLFGLGMDK-TSVPSI------LANQGLIPNS-FSMCFG 274
+ + SF G PN GL GLG D T+V + L +QGLI F + G
Sbjct: 106 ----LAKREAASFASG--PNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLG 159
Query: 275 SDGTGRI---------SFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSA 325
G S KGS T + + + IT+ + +VG + V F
Sbjct: 160 KAKNGGGGEYIFGGYDSTKFKGS----LTTVPIDNSRGWWGITVDRATVGTSTVASSFDG 215
Query: 326 IFDSGTSFTYL 336
I D+GT+ L
Sbjct: 216 ILDTGTTLLIL 226
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 96/250 (38%), Gaps = 52/250 (20%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQVIDFNIY 155
N L ++ + +G PA F V DTGS W+P C ++C D N +
Sbjct: 52 NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----------DHNQF 100
Query: 156 SPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEK 215
+P+ SST +T EL + Y G+M TG L D + +
Sbjct: 101 NPDDSST-----FEATXQEL-------------SITY-GTGSM-TGILGYDTVQVG---- 136
Query: 216 QSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI------LANQGLIPNS- 268
D+ FG + GSFL A +G+ GL S L +QGL+
Sbjct: 137 --GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 194
Query: 269 FSMCFGS-DGTGRISF--GDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323
FS+ S D +G + G S G + + IT+ +++ G +
Sbjct: 195 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC 254
Query: 324 SAIFDSGTSF 333
AI D+GTS
Sbjct: 255 QAIVDTGTSL 264
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 96/250 (38%), Gaps = 52/250 (20%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQVIDFNIY 155
N L ++ + +G PA F V DTGS W+P C ++C D N +
Sbjct: 52 NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----------DHNQF 100
Query: 156 SPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEK 215
+P+ SST +T EL + Y G+M TG L D + +
Sbjct: 101 NPDDSST-----FEATSQEL-------------SITY-GTGSM-TGILGYDTVQVG---- 136
Query: 216 QSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI------LANQGLIPNS- 268
D+ FG + GSFL A +G+ GL S L +QGL+
Sbjct: 137 --GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 194
Query: 269 FSMCFGS-DGTGRISF--GDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323
FS+ S D +G + G S G + + IT+ +++ G +
Sbjct: 195 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC 254
Query: 324 SAIFDSGTSF 333
AI D+GTS
Sbjct: 255 QAIVDTGTSL 264
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 105/298 (35%), Gaps = 40/298 (13%)
Query: 162 TSSKVPCNSTLCELQKQCPSAGSNCPYQ---------VRYLSD---GTMSTGFLVEDVLH 209
+ +++ C+S C L P+ G P Y S+ G + G L
Sbjct: 46 SPAEIACSSPTCLLANAYPAPGCPAPSCGSDRHDKPCTAYPSNPVTGACAAGSLFHTRFA 105
Query: 210 LATDE--KQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPN 267
T + K V+ R+ C + + L + G+ GL ++PS +A+ +PN
Sbjct: 106 ANTTDGNKPVSEVNVRVLAACAPSKLLASLPRGS-TGVAGLAGSGLALPSQVASAQKVPN 164
Query: 268 SFSMCFGSDGTGRISFGDKGSP------GQGETPFSLRQTHPTYNITITQVSVGGNAVNF 321
F +C + G G FG P TP + P + I+ + V V
Sbjct: 165 KFLLCLPTGGPGVAIFGGGPLPWPQFTQSMDYTPLVAKGGSPAHYISARSIKVENTRVPI 224
Query: 322 EFSAIFDSGT------SFTYLNDPAYTQISETF-NSLAKEKRETSTSD------LPFEYC 368
A+ G + L Y + + F +LA + + PFE C
Sbjct: 225 SERALATGGVMLSTRLPYVLLRRDVYRPLVDAFTKALAAQPANGAPVARAVKPVAPFELC 284
Query: 369 Y---VLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVN 423
Y L N + P V L + GG + + +V +P C+ V+ V+
Sbjct: 285 YDTKTLGNNPGGYWVPNVLLELDGGSDWAMTGKNSMVDVKPG---TACVAFVEMKGVD 339
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 96/250 (38%), Gaps = 52/250 (20%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQVIDFNIY 155
N L ++ + +G PA F V DTGS W+P C ++C D N +
Sbjct: 8 NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----------DHNQF 56
Query: 156 SPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEK 215
+P+ SST +T EL + Y G+M TG L D + +
Sbjct: 57 NPDDSST-----FEATXQEL-------------SITY-GTGSM-TGILGYDTVQVG---- 92
Query: 216 QSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI------LANQGLIPNS- 268
D+ FG + GSFL A +G+ GL S L +QGL+
Sbjct: 93 --GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 150
Query: 269 FSMCFGS-DGTGRISF--GDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323
FS+ S D +G + G S G + + IT+ +++ G +
Sbjct: 151 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC 210
Query: 324 SAIFDSGTSF 333
AI D+GTS
Sbjct: 211 QAIVDTGTSL 220
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 96/250 (38%), Gaps = 52/250 (20%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQVIDFNIY 155
N L ++ + +G PA F V DTGS W+P C ++C D N +
Sbjct: 8 NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----------DHNQF 56
Query: 156 SPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEK 215
+P+ SST +T EL + Y G+M TG L D + +
Sbjct: 57 NPDDSST-----FEATXQEL-------------SITY-GTGSM-TGILGYDTVQVG---- 92
Query: 216 QSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI------LANQGLIPNS- 268
D+ FG + GSFL A +G+ GL S L +QGL+
Sbjct: 93 --GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 150
Query: 269 FSMCFGS-DGTGRISF--GDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323
FS+ S D +G + G S G + + IT+ +++ G +
Sbjct: 151 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC 210
Query: 324 SAIFDSGTSF 333
AI D+GTS
Sbjct: 211 QAIVDTGTSL 220
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 95/265 (35%), Gaps = 41/265 (15%)
Query: 164 SKVPCNSTLCELQKQCPSAGSNCP-------------YQVRYLSDGTMSTGFLVEDVLHL 210
+++PC+S C L P+ G P Y +S G + G L +
Sbjct: 46 AEIPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVS-GACAAGSL-SHTRFV 103
Query: 211 ATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNG---LFGLGMDKTSVPSILANQGLIPN 267
A SK V S+++ G S L + P G + GL ++P+ +A+ + N
Sbjct: 104 ANTTDGSKPV-SKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVAN 162
Query: 268 SFSMCFGSDGTGRISFGDKGSP------GQGETPFSLRQTHPTYNITITQVSVGGNAVNF 321
F +C + G G FG P TP + P + I+ + VG V
Sbjct: 163 RFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPV 222
Query: 322 EFSAIFDSGT------SFTYLNDPAYTQISETF-NSLAKEKRETS------TSDLPFEYC 368
A+ G + L Y + + F +LA + + + PF C
Sbjct: 223 PEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVC 282
Query: 369 Y---VLSPNQTNFEYPVVNLTMKGG 390
Y L N + P V L + GG
Sbjct: 283 YDTKTLGNNLGGYAVPNVQLGLDGG 307
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 100/250 (40%), Gaps = 53/250 (21%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLN-SSSGQVIDFNIYSPNTSSTS 163
+ + VSVG V +DTGS FW+ C G++ SSG ++P++SS+
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSG------TFTPSSSSSY 67
Query: 164 SKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHL---------ATDE 214
+ + +RY DG+ S G +D + + D
Sbjct: 68 KNL------------------GAAFTIRY-GDGSTSQGTWGKDTVTINGVSITGQQIADV 108
Query: 215 KQSKSVDSRISFGCGRVQTGSFLDGAA----PNGLFGLGMDKTSVPSILANQGLI-PNSF 269
Q+ SVD I G G + D + PN +VP L QG I N++
Sbjct: 109 TQT-SVDQGI-LGIGYTSNEAVYDTSGRQTTPN--------YDNVPVTLKKQGKIRTNAY 158
Query: 270 SMCFGSDG--TGRISFGD-KGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAI 326
S+ S TG I FG + G+ + I++ V++ G++ +F A+
Sbjct: 159 SLYLNSPSAETGTIIFGGVDNAKYSGKLVAEQVTSSQALTISLASVNLKGSSFSFGDGAL 218
Query: 327 FDSGTSFTYL 336
DSGT+ TY
Sbjct: 219 LDSGTTLTYF 228
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 96/250 (38%), Gaps = 52/250 (20%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQVIDFNIY 155
N L ++ + +G PA F V DTGS W+P C ++C D N +
Sbjct: 8 NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----------DHNQF 56
Query: 156 SPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEK 215
+P+ SST +T EL + Y G+M TG L D + +
Sbjct: 57 NPDDSST-----FEATSQEL-------------SITY-GTGSM-TGILGYDTVQVG---- 92
Query: 216 QSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI------LANQGLIPNS- 268
D+ FG + GSFL A +G+ GL S L +QGL+
Sbjct: 93 --GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 150
Query: 269 FSMCFGS-DGTGRISF--GDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323
FS+ S D +G + G S G + + IT+ +++ G +
Sbjct: 151 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC 210
Query: 324 SAIFDSGTSF 333
AI D+GTS
Sbjct: 211 QAIVDTGTSL 220
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 96/250 (38%), Gaps = 52/250 (20%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQVIDFNIY 155
N L ++ + +G PA F V DTGS W+P C ++C D N +
Sbjct: 8 NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----------DHNQF 56
Query: 156 SPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEK 215
+P+ SST +T EL + Y G+M TG L D + +
Sbjct: 57 NPDDSST-----FEATSQEL-------------SITY-GTGSM-TGILGYDTVQVG---- 92
Query: 216 QSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI------LANQGLIPNS- 268
D+ FG + GSFL A +G+ GL S L +QGL+
Sbjct: 93 --GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 150
Query: 269 FSMCFGS-DGTGRISF--GDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323
FS+ S D +G + G S G + + IT+ +++ G +
Sbjct: 151 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC 210
Query: 324 SAIFDSGTSF 333
AI D+GTS
Sbjct: 211 QAIVDTGTSL 220
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 96/250 (38%), Gaps = 52/250 (20%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQVIDFNIY 155
N L ++ + +G PA F V DTGS W+P C ++C D N +
Sbjct: 8 NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----------DHNQF 56
Query: 156 SPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEK 215
+P+ SST +T EL + Y G+M TG L D + +
Sbjct: 57 NPDDSST-----FEATSQEL-------------SITY-GTGSM-TGILGYDTVQVG---- 92
Query: 216 QSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI------LANQGLIPNS- 268
D+ FG + GSFL A +G+ GL S L +QGL+
Sbjct: 93 --GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDL 150
Query: 269 FSMCFGS-DGTGRISF--GDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323
FS+ S D +G + G S G + + IT+ +++ G +
Sbjct: 151 FSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGC 210
Query: 324 SAIFDSGTSF 333
AI D+GTS
Sbjct: 211 QAIVDTGTSL 220
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 131/351 (37%), Gaps = 68/351 (19%)
Query: 93 NDTYRLNSLG-FLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQ 148
ND+ L+ + + Y +G F+ DTGS W+P CD + C S+
Sbjct: 3 NDSIELDDVANLMFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCDSIGC------STKH 56
Query: 149 VIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVL 208
+ D +S S + T E+ S GS GT+ G+ +DV+
Sbjct: 57 LYD--------ASASKSYEKDGTKVEI-----SYGS-----------GTVR-GYFSKDVI 91
Query: 209 HLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI------LANQ 262
L K ++ + + +GS D G+ GLG S+ SI L Q
Sbjct: 92 SLGDLSLPYKFIEVTDADDLEPIYSGSEFD-----GILGLGWKDLSIGSIDPVVVELKKQ 146
Query: 263 GLIPN---SFSMCFGSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAV 319
I N +F + G ++ G S E P + + + I G V
Sbjct: 147 NKIDNALFTFYLPVHDKHVGYLTIGGIESDFY-EGPLTYEKLNHDLYWQIDLDIHFGKYV 205
Query: 320 NFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFE 379
+ +A+ DSGTS I+ + L K R+ + +PF YV + + N +
Sbjct: 206 MQKANAVVDSGTS----------TITAPTSFLNKFFRDMNVIKVPFLPLYVTTCD--NDD 253
Query: 380 YPVVNLTMKGGG----PFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIG 426
P + + P F DP+ + +P LY L V DN I+G
Sbjct: 254 LPTLEFHSRNNKYTLEPEFYMDPLSDI--DPALCMLYILPVDIDDNTFILG 302
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 97/256 (37%), Gaps = 58/256 (22%)
Query: 94 DTYRLNSLG-FLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQV 149
D+ LN + ++Y +G F DTGS W+P C+ + C
Sbjct: 11 DSVTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTK-------- 62
Query: 150 IDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLH 209
N+Y N S T K + T E+ Y+S GT+S GF +D++
Sbjct: 63 ---NLYDSNKSKTYEK---DGTKVEM---------------NYVS-GTVS-GFFSKDIVT 99
Query: 210 LATDEKQSKSVDSRISFGCGRVQT-GSFLDGAAPNGLFGLGMDKTSVPSI------LANQ 262
+A K ++ + G T G F +G+ GLG S+ S+ L NQ
Sbjct: 100 IANLSFPYKFIEVTDTNGFEPAYTLGQF------DGIVGLGWKDLSIGSVDPVVVELKNQ 153
Query: 263 GLIPN---SFSMCFGSDGTGRISFG---DKGSPGQGETPFSLRQTHPTYNITITQVSVGG 316
I +F + F G ++ G D+ GQ + H Y + G
Sbjct: 154 NKIEQAVFTFYLPFDDKHKGYLTIGGIEDRFYEGQLTYE---KLNHDLYWQVDLDLHFGN 210
Query: 317 NAVNFEFSAIFDSGTS 332
V + +AI DSGTS
Sbjct: 211 LTVE-KATAIVDSGTS 225
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 95/246 (38%), Gaps = 54/246 (21%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSCVHGLNSSSGQVIDFNIYSPNTSS 161
++ +S+G P +F+V DTGS W+P C +C + ++P+ SS
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACT-----------SHSRFNPSESS 62
Query: 162 TSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVD 221
T S N LQ G++ TGF D L + QS V
Sbjct: 63 TYST---NGQTFSLQ----------------YGSGSL-TGFFGYDTLTV-----QSIQVP 97
Query: 222 SRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSV-PSILANQGLIPNS------FSMCF- 273
++ FG + G+ A +G+ GL SV + A QG++ FS+
Sbjct: 98 NQ-EFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLS 156
Query: 274 ---GSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNF---EFSAIF 327
GS G + G S G+ ++ + I I + +GG A + AI
Sbjct: 157 NQQGSSGGAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQAIV 216
Query: 328 DSGTSF 333
D+GTS
Sbjct: 217 DTGTSL 222
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 94/265 (35%), Gaps = 41/265 (15%)
Query: 164 SKVPCNSTLCELQKQCPSAGSNCP-------------YQVRYLSDGTMSTGFLVEDVLHL 210
+++PC+S C L P+ G P Y +S G + G L +
Sbjct: 46 AEIPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVS-GACAAGSL-SHTRFV 103
Query: 211 ATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNG---LFGLGMDKTSVPSILANQGLIPN 267
A SK V S+++ G S L + P G + GL ++P+ +A+ + N
Sbjct: 104 ANTTDGSKPV-SKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVAN 162
Query: 268 SFSMCFGSDGTGRISFGDKGSP------GQGETPFSLRQTHPTYNITITQVSVGGNAVNF 321
F +C + G G FG P TP + P + I+ + VG V
Sbjct: 163 RFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPV 222
Query: 322 EFSAIFDSGT------SFTYLNDPAYTQISETF-NSLAKEKRE------TSTSDLPFEYC 368
A+ G + L Y + + F +LA + + PF C
Sbjct: 223 PEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVVAVAPFGVC 282
Query: 369 Y---VLSPNQTNFEYPVVNLTMKGG 390
Y L N + P V L + GG
Sbjct: 283 YDTKTLGNNLGGYAVPNVQLGLDGG 307
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 98 LNSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSC 138
+N L ++ +S+G P +F V DTGS W+P C +C
Sbjct: 18 INYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPAC 61
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 104/278 (37%), Gaps = 43/278 (15%)
Query: 64 AHRDRYFRLRGRGLAAQGNDKTPLTFSAGNDTYRLNSLGFLHYTNVSVGQPALSFIVALD 123
H+ + + G KT S+ ++ ++ + Y + VG F LD
Sbjct: 99 THKLKNYIKESVNFLNSGLTKTNYLGSSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILD 158
Query: 124 TGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAG 183
TGS W+P V C ++ + ++Y + S T K
Sbjct: 159 TGSANLWVP--SVKC------TTAGCLTKHLYDSSKSRTYEK------------------ 192
Query: 184 SNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPN 243
++ Y+S GT+S GF +D++ + K ++ + G T S D
Sbjct: 193 DGTKVEMNYVS-GTVS-GFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFD----- 245
Query: 244 GLFGLGMDKTSVPSI------LANQGLIPN---SFSMCFGSDGTGRISFGDKGSPGQGET 294
G+ GLG S+ S+ L NQ I N +F + TG ++ G E
Sbjct: 246 GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFY-EG 304
Query: 295 PFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTS 332
P + + + IT + GN + + + I DSGTS
Sbjct: 305 PLTYEKLNHDLYWQITLDAHVGNIMLEKANCIVDSGTS 342
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 104/278 (37%), Gaps = 43/278 (15%)
Query: 64 AHRDRYFRLRGRGLAAQGNDKTPLTFSAGNDTYRLNSLGFLHYTNVSVGQPALSFIVALD 123
H+ + + G KT S+ ++ ++ + Y + VG F LD
Sbjct: 26 THKLKNYIKESVNFLNSGLTKTNYLGSSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILD 85
Query: 124 TGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAG 183
TGS W+P V C ++ + ++Y + S T K
Sbjct: 86 TGSANLWVP--SVKC------TTAGCLTKHLYDSSKSRTYEK------------------ 119
Query: 184 SNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPN 243
++ Y+S GT+S GF +D++ + K ++ + G T S D
Sbjct: 120 DGTKVEMNYVS-GTVS-GFFSKDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFD----- 172
Query: 244 GLFGLGMDKTSVPSI------LANQGLIPN---SFSMCFGSDGTGRISFGDKGSPGQGET 294
G+ GLG S+ S+ L NQ I N +F + TG ++ G E
Sbjct: 173 GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFY-EG 231
Query: 295 PFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTS 332
P + + + IT + GN + + + I DSGTS
Sbjct: 232 PLTYEKLNHDLYWQITLDAHVGNIMLEKANCIVDSGTS 269
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 56/272 (20%), Positives = 100/272 (36%), Gaps = 57/272 (20%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDF----NIYSPNTS 160
+ ++ VG V +DTGS W+ C + SGQ +F + P++S
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQV---TYSGQTNNFCKQEGTFDPSSS 70
Query: 161 STSSKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSV 220
S++ + N + + Y D T S G +D
Sbjct: 71 SSAQNL------------------NQDFSIEY-GDLTSSQGSFYKDT------------- 98
Query: 221 DSRISFGCGRVQTGSFLD---GAAPNGLFGLGMDKT--------SVPSILANQGLI-PNS 268
+ FG ++ F D + G+ G+G +VP L QG+I N+
Sbjct: 99 ---VGFGGISIKNQQFADVTTTSVDQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNA 155
Query: 269 FSMCFGSD--GTGRISFGDKGSPGQGETPFSLRQTHPT-YNITITQVSVGGNAVNFEFSA 325
+S+ S+ TG+I FG + T +L T + + ++ G +V+
Sbjct: 156 YSLYLNSEDASTGKIIFGGVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSVSTNADV 215
Query: 326 IFDSGTSFTYLNDPAYTQISETFNSLAKEKRE 357
+ DSGT+ TY + + + + + E
Sbjct: 216 VLDSGTTITYFSQSTADKFARIVGATWDSRNE 247
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 101/271 (37%), Gaps = 50/271 (18%)
Query: 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTS 163
+ Y + VG F LDTGS W+P V C ++ + ++Y + S T
Sbjct: 17 MFYGDAEVGDNQQPFTFILDTGSANLWVP--SVKC------TTAGCLTKHLYDSSKSRTY 68
Query: 164 SKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSR 223
K ++ Y+S GT+S GF +D++ + K ++
Sbjct: 69 EK------------------DGTKVEMNYVS-GTVS-GFFSKDLVTVGNLSLPYKFIEVI 108
Query: 224 ISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI------LANQGLIPN---SFSMCFG 274
+ G T S D G+ GLG S+ S+ L NQ I N +F +
Sbjct: 109 DTNGFEPTYTASTFD-----GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVH 163
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFT 334
TG ++ G E P + + + IT + GN + + + I DSGTS
Sbjct: 164 DKHTGFLTIGGIEERFY-EGPLTYEKLNHDLYWQITLDAHVGNIMLEKANCIVDSGTS-- 220
Query: 335 YLNDPAYTQISETFNSLAKEKRETSTSDLPF 365
A T ++ N + + LPF
Sbjct: 221 -----AITVPTDFLNKMLQNLDVIKVPFLPF 246
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 91/238 (38%), Gaps = 43/238 (18%)
Query: 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTS 163
+ Y + VG F LDTGS W+P V C ++ + ++Y + S T
Sbjct: 15 MFYGDAEVGDNQQPFTFILDTGSANLWVP--SVKC------TTAGCLTKHLYDSSKSRTY 66
Query: 164 SKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSR 223
K ++ Y+S GT+S GF +D++ + K ++
Sbjct: 67 EK------------------DGTKVEMNYVS-GTVS-GFFSKDLVTVGNLSLPYKFIEVI 106
Query: 224 ISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI------LANQGLIPN---SFSMCFG 274
+ G T S D G+ GLG S+ S+ L NQ I N +F +
Sbjct: 107 DTNGFEPTYTASTFD-----GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVH 161
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTS 332
TG ++ G E P + + + IT + GN + + + I DSGTS
Sbjct: 162 DKHTGFLTIGGIEERFY-EGPLTYEKLNHDLYWQITLDAHVGNIMLEKANCIVDSGTS 218
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCD 134
+ NV VG PA ++ + +DTGS WL D
Sbjct: 14 YVVNVGVGSPATTYSLLVDTGSSNTWLGAD 43
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 86 PLTFSAGNDTYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP 132
PL D L N + ++ + VG P F V DTGS W+P
Sbjct: 34 PLRSEEEGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVP 81
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLP 132
++ + +G P F V DTGS + W+P
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWVP 42
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 70 FRLRGRGLAAQGNDKT-PLT-FSAGNDTYRL---NSLGFLHYTNVSVGQPALSFIVALDT 124
+ RG +A G + + P+ + GN T + N + +Y + +G P +F V DT
Sbjct: 23 LKERGVDMARLGPEWSQPMKRLTLGNTTSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDT 82
Query: 125 GSDLFWLP 132
GS W+P
Sbjct: 83 GSSNVWVP 90
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 90/238 (37%), Gaps = 43/238 (18%)
Query: 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTS 163
+ Y + VG F LDTGS W+P V C ++ + ++Y + S T
Sbjct: 17 MFYGDAEVGDNQQPFTFILDTGSANLWVP--SVKC------TTAGCLTKHLYDSSKSRTY 68
Query: 164 SKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSR 223
K ++ Y+S GT+S GF +D++ + K ++
Sbjct: 69 EK------------------DGTKVEMNYVS-GTVS-GFFSKDLVTVGNLSLPYKFIEVI 108
Query: 224 ISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI------LANQGLIPN---SFSMCFG 274
+ G T S D G+ GLG S+ S+ L NQ I N +F +
Sbjct: 109 DTNGFEPTYTASTFD-----GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVH 163
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTS 332
TG ++ G E P + + + IT + GN + + I DSGTS
Sbjct: 164 DKHTGFLTIGGIEERFY-EGPLTYEKLNHDLYWQITLDAHVGNISLEKANCIVDSGTS 220
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP 132
N + +Y + +G P F V DTGS W+P
Sbjct: 9 NYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVP 42
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSC 138
N L ++ + +G P F V DTGS FW+P C +C
Sbjct: 10 NYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNAC 52
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSC 138
N L ++ + +G P F V DTGS FW+P C +C
Sbjct: 10 NYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNAC 52
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 90/238 (37%), Gaps = 43/238 (18%)
Query: 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTS 163
+ Y + VG F LDTGS W+P V C ++ + ++Y + S T
Sbjct: 15 MFYGDAEVGDNQQPFTFILDTGSANLWVP--SVKC------TTAGCLTKHLYDSSKSRTY 66
Query: 164 SKVPCNSTLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSR 223
K ++ Y+S GT+S GF +D++ + K ++
Sbjct: 67 EK------------------DGTKVEMNYVS-GTVS-GFFSKDLVTVGNLSLPYKFIEVI 106
Query: 224 ISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI------LANQGLIPN---SFSMCFG 274
+ G T S D G+ GLG S+ S+ L NQ I N +F +
Sbjct: 107 DTNGFEPTYTASTFD-----GILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVH 161
Query: 275 SDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTS 332
TG ++ G E P + + + IT + GN + + I DSGTS
Sbjct: 162 DKHTGFLTIGGIEERFY-EGPLTYEKLNHDLYWQITLDAHVGNISLEKANCIVDSGTS 218
>pdb|1BLF|A Chain A, Structure Of Diferric Bovine Lactoferrin At 2.8 Angstroms
Resolution
Length = 689
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 23/107 (21%)
Query: 75 RGLAAQGNDKTPL----TFSAGNDTYRLNSLGF----------LHYTNVSVGQPALSFIV 120
R +A + D L F AG D Y+L + HY V+V + +F +
Sbjct: 47 RAIAEKKADAVTLDGGMVFEAGRDPYKLRPVAAEIYGTKESPQTHYYAVAVVKKGSNFQL 106
Query: 121 ALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVP 167
G SC GL S+G +I I P S T S P
Sbjct: 107 DQLQGRK---------SCHTGLGRSAGWIIPMGILRPYLSWTESLEP 144
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLP 132
+Y + +G P +F V DTGS W+P
Sbjct: 13 YYGEIGIGTPPQTFKVVFDTGSSNVWVP 40
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLP 132
+Y + +G P +F V DTGS W+P
Sbjct: 17 YYGEIGIGTPPQTFKVVFDTGSSNVWVP 44
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLP 132
+Y + +G P +F V DTGS W+P
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVP 47
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLP 132
+Y + +G P +F V DTGS W+P
Sbjct: 16 YYGEIGIGTPPQTFKVVFDTGSSNVWVP 43
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLP 132
N L +Y + +G P +F V DTGS W+P
Sbjct: 11 NYLNSQYYGEIGIGTPPQTFKVIFDTGSANLWVP 44
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLP 132
+Y + +G P +F V DTGS W+P
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVP 47
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLP 132
+Y + +G P +F V DTGS W+P
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVP 47
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLP 132
+Y + +G P +F V DTGS W+P
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVP 47
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLP---CDCVSC 138
+Y +S+G P SF V DTGS W+ C +C
Sbjct: 14 YYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQAC 50
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 109 VSVGQPALSFIVALDTGSDLFWLP 132
VS+G P F++ DTGS W+P
Sbjct: 24 VSIGTPGQDFLLLFDTGSSDTWVP 47
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 65/185 (35%), Gaps = 40/185 (21%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSS 164
+ T ++ P +S + +D G W+ CD SST
Sbjct: 22 YVTTINQRTPLVSENLVVDLGGRFLWVDCD---------------------QNYVSSTYR 60
Query: 165 KVPCNSTLCELQKQC--------PSAGSN---CPYQVRYLSDGTMSTGFLVEDVLHL-AT 212
V C ++ C L P G N C T + G + EDV+ + +T
Sbjct: 61 PVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVEST 120
Query: 213 DEKQSKSVDS--RISFGCGRVQTGSFLDGAAPN--GLFGLGMDKTSVPSILANQGLIPNS 268
D S V + R F C S L A G+ GLG + ++PS A+
Sbjct: 121 DGSSSGRVVTVPRFIFSCAPT---SLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRK 177
Query: 269 FSMCF 273
F+MC
Sbjct: 178 FAMCL 182
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 65/185 (35%), Gaps = 40/185 (21%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSS 164
+ T ++ P +S + +D G W+ CD SST
Sbjct: 22 YVTTINQRTPLVSENLVVDLGGRFLWVDCD---------------------QNYVSSTYR 60
Query: 165 KVPCNSTLCELQKQC--------PSAGSN---CPYQVRYLSDGTMSTGFLVEDVLHL-AT 212
V C ++ C L P G N C T + G + EDV+ + +T
Sbjct: 61 PVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVEST 120
Query: 213 DEKQSKSVDS--RISFGCGRVQTGSFLDGAAPN--GLFGLGMDKTSVPSILANQGLIPNS 268
D S V + R F C S L A G+ GLG + ++PS A+
Sbjct: 121 DGSSSGRVVTVPRFIFSCAPT---SLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRK 177
Query: 269 FSMCF 273
F+MC
Sbjct: 178 FAMCL 182
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 105 HYTNVSVGQPALSFIVALDTGSDLFWLP 132
++ + +G P F V DTGS W+P
Sbjct: 13 YFGKIYIGTPPQEFTVVFDTGSSDLWVP 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,502,204
Number of Sequences: 62578
Number of extensions: 585348
Number of successful extensions: 1322
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1257
Number of HSP's gapped (non-prelim): 73
length of query: 444
length of database: 14,973,337
effective HSP length: 102
effective length of query: 342
effective length of database: 8,590,381
effective search space: 2937910302
effective search space used: 2937910302
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)