Query 013377
Match_columns 444
No_of_seqs 268 out of 1637
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 03:14:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.4E-64 3E-69 513.1 42.7 382 23-443 18-420 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 1.1E-53 2.5E-58 430.9 32.7 319 100-440 42-382 (398)
3 cd05490 Cathepsin_D2 Cathepsin 100.0 3.5E-52 7.6E-57 410.3 28.8 297 99-443 1-320 (325)
4 cd05478 pepsin_A Pepsin A, asp 100.0 5E-52 1.1E-56 407.7 29.2 292 99-443 5-312 (317)
5 PTZ00165 aspartyl protease; Pr 100.0 2.2E-51 4.8E-56 418.8 34.7 298 94-443 109-440 (482)
6 cd05486 Cathespin_E Cathepsin 100.0 5.5E-51 1.2E-55 400.1 27.5 289 105-443 1-311 (316)
7 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.2E-50 4.7E-55 397.4 30.0 291 104-443 3-317 (326)
8 cd05489 xylanase_inhibitor_I_l 100.0 5.3E-50 1.1E-54 398.0 32.2 304 111-443 2-355 (362)
9 cd05477 gastricsin Gastricsins 100.0 2.9E-50 6.3E-55 395.4 29.9 290 102-443 1-312 (318)
10 cd05488 Proteinase_A_fungi Fun 100.0 1.4E-50 3E-55 397.9 27.5 293 99-443 5-315 (320)
11 cd05485 Cathepsin_D_like Cathe 100.0 2.2E-50 4.7E-55 397.7 28.8 298 99-443 6-324 (329)
12 cd06098 phytepsin Phytepsin, a 100.0 2.8E-50 6.1E-55 395.1 28.9 285 99-443 5-312 (317)
13 cd05487 renin_like Renin stimu 100.0 4.5E-50 9.8E-55 395.3 29.0 295 99-443 3-320 (326)
14 cd05472 cnd41_like Chloroplast 100.0 4.6E-49 9.9E-54 383.7 30.8 276 104-443 1-291 (299)
15 PTZ00147 plasmepsin-1; Provisi 100.0 2.8E-48 6.1E-53 393.1 30.3 299 92-443 126-443 (453)
16 cd05473 beta_secretase_like Be 100.0 3.4E-47 7.4E-52 380.2 30.2 302 103-443 2-339 (364)
17 PTZ00013 plasmepsin 4 (PM4); P 100.0 4E-47 8.7E-52 384.0 30.6 298 93-443 126-442 (450)
18 cd05475 nucellin_like Nucellin 100.0 9.4E-47 2E-51 362.4 30.3 250 104-443 2-265 (273)
19 cd06097 Aspergillopepsin_like 100.0 2.5E-46 5.5E-51 360.6 25.9 259 105-443 1-273 (278)
20 cd05476 pepsin_A_like_plant Ch 100.0 6.5E-44 1.4E-48 341.4 26.0 236 104-443 1-257 (265)
21 cd05474 SAP_like SAPs, pepsin- 100.0 3.2E-43 7E-48 341.9 25.3 257 104-443 2-289 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 6.5E-44 1.4E-48 350.0 18.8 291 104-443 1-311 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 2E-41 4.3E-46 326.8 27.3 260 105-443 1-278 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 9.8E-32 2.1E-36 237.8 15.2 157 105-285 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 1.7E-22 3.7E-27 166.6 12.4 107 107-248 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.9 1.1E-22 2.5E-27 179.6 11.0 137 304-443 1-156 (161)
27 cd05483 retropepsin_like_bacte 97.7 0.00019 4.2E-09 56.8 8.0 92 104-250 2-94 (96)
28 PF13650 Asp_protease_2: Aspar 95.2 0.19 4.2E-06 38.7 9.1 26 107-134 1-26 (90)
29 TIGR02281 clan_AA_DTGA clan AA 94.9 0.31 6.6E-06 40.6 9.9 32 101-134 8-39 (121)
30 cd05479 RP_DDI RP_DDI; retrope 93.8 0.72 1.6E-05 38.5 9.9 29 104-134 16-44 (124)
31 cd05484 retropepsin_like_LTR_2 92.0 0.19 4.1E-06 39.4 3.6 28 105-134 1-28 (91)
32 cd05479 RP_DDI RP_DDI; retrope 88.1 0.81 1.8E-05 38.2 4.5 21 422-442 100-120 (124)
33 PF11925 DUF3443: Protein of u 87.4 7.2 0.00016 38.5 11.0 28 107-134 28-58 (370)
34 PF13975 gag-asp_proteas: gag- 86.9 1.3 2.9E-05 33.0 4.6 31 102-134 6-36 (72)
35 TIGR03698 clan_AA_DTGF clan AA 84.3 4.8 0.0001 32.6 7.0 23 421-443 84-106 (107)
36 PF00077 RVP: Retroviral aspar 82.1 2.2 4.7E-05 33.8 4.2 27 106-134 7-33 (100)
37 cd06094 RP_Saci_like RP_Saci_l 81.2 7.3 0.00016 30.3 6.5 78 323-433 10-87 (89)
38 PF13650 Asp_protease_2: Aspar 78.6 2.8 6E-05 32.0 3.6 29 312-344 3-31 (90)
39 cd05484 retropepsin_like_LTR_2 73.4 4.9 0.00011 31.2 3.8 30 311-344 4-33 (91)
40 TIGR02281 clan_AA_DTGA clan AA 73.1 4.6 9.9E-05 33.5 3.7 35 302-343 9-43 (121)
41 cd05482 HIV_retropepsin_like R 72.0 5.5 0.00012 31.0 3.6 25 108-134 2-26 (87)
42 PF13975 gag-asp_proteas: gag- 71.1 8.2 0.00018 28.6 4.3 30 311-344 12-41 (72)
43 cd05483 retropepsin_like_bacte 70.4 8.8 0.00019 29.5 4.7 31 310-344 5-35 (96)
44 PF08284 RVP_2: Retroviral asp 70.2 7.2 0.00016 33.0 4.3 21 422-442 105-125 (135)
45 cd06095 RP_RTVL_H_like Retrope 68.4 6.8 0.00015 30.2 3.5 25 108-134 2-26 (86)
46 PF02160 Peptidase_A3: Caulifl 62.2 7.8 0.00017 35.1 3.1 41 378-435 65-105 (201)
47 cd06095 RP_RTVL_H_like Retrope 58.8 13 0.00029 28.5 3.6 29 312-344 3-31 (86)
48 PF12384 Peptidase_A2B: Ty3 tr 56.8 29 0.00063 30.3 5.5 21 323-343 46-66 (177)
49 PF00077 RVP: Retroviral aspar 53.0 12 0.00026 29.4 2.5 25 311-339 9-33 (100)
50 cd05481 retropepsin_like_LTR_1 49.4 14 0.0003 29.0 2.3 30 312-344 3-32 (93)
51 PF09668 Asp_protease: Asparty 48.0 15 0.00033 30.6 2.4 34 104-139 24-58 (124)
52 PF12384 Peptidase_A2B: Ty3 tr 40.7 37 0.00081 29.7 3.7 28 107-134 35-62 (177)
53 COG3577 Predicted aspartyl pro 39.8 92 0.002 28.3 6.1 38 95-134 95-133 (215)
54 PF09668 Asp_protease: Asparty 35.3 50 0.0011 27.5 3.6 29 311-343 28-56 (124)
55 COG3577 Predicted aspartyl pro 35.0 88 0.0019 28.5 5.2 32 302-340 103-134 (215)
56 COG5550 Predicted aspartyl pro 34.5 26 0.00057 29.0 1.7 20 325-344 29-49 (125)
57 PF11587 Prion_bPrPp: Major pr 31.0 41 0.00088 20.2 1.6 21 1-21 1-21 (29)
58 TIGR03698 clan_AA_DTGF clan AA 24.8 98 0.0021 24.8 3.6 27 107-133 2-33 (107)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.4e-64 Score=513.14 Aligned_cols=382 Identities=24% Similarity=0.433 Sum_probs=299.1
Q ss_pred cccCCceeEEEEEeccCCcccccccCCCCCCCCCHHHHHHHHhcChhhhhhhhhhccCCCCCCceeecCCCceeeeccCC
Q 013377 23 CCFGFGTFGFDFHHRYSDPVKGILAVDDLPKKGSFAYYSALAHRDRYFRLRGRGLAAQGNDKTPLTFSAGNDTYRLNSLG 102 (444)
Q Consensus 23 ~~~~~~~~~~~l~h~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (444)
......+++++|+||+++ +++...+..+..++++++++|++ +|++++........++ .. ++...+
T Consensus 18 ~~~~~~~~~~~l~h~~~~-----~sp~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~~--~~-----~~~~~~ 82 (431)
T PLN03146 18 AEAPKGGFTVDLIHRDSP-----KSPFYNPSETPSQRLRNAFRRSI---SRVNHFRPTDASPNDP--QS-----DLISNG 82 (431)
T ss_pred ccccCCceEEEEEeCCCC-----CCCCCCCCCChhHHHHHHHHHHH---HHHHHHhhccccCCcc--cc-----CcccCC
Confidence 334567899999999986 23322345566788999999999 4555553311111111 11 111345
Q ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCC---C
Q 013377 103 FLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK---Q 178 (444)
Q Consensus 103 ~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~---~ 178 (444)
.+|+++|.||||||++.|++||||+++||+|. |..|..+. ++.|||++|+||+.++|+++.|+... .
T Consensus 83 ~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~---------~~~fdps~SST~~~~~C~s~~C~~~~~~~~ 153 (431)
T PLN03146 83 GEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQV---------SPLFDPKKSSTYKDVSCDSSQCQALGNQAS 153 (431)
T ss_pred ccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCC---------CCcccCCCCCCCcccCCCCcccccCCCCCC
Confidence 68999999999999999999999999999999 98887653 38999999999999999999998752 4
Q ss_pred CCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCChHHH
Q 013377 179 CPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI 258 (444)
Q Consensus 179 C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q 258 (444)
|..+ +.|.|.+.| +|++.+.|.+++|+|+|++..+. ...++++.|||++.+.|.+.. ..+||||||++++|+++|
T Consensus 154 c~~~-~~c~y~i~Y-gdgs~~~G~l~~Dtltlg~~~~~-~~~v~~~~FGc~~~~~g~f~~--~~~GilGLG~~~~Sl~sq 228 (431)
T PLN03146 154 CSDE-NTCTYSYSY-GDGSFTKGNLAVETLTIGSTSGR-PVSFPGIVFGCGHNNGGTFDE--KGSGIVGLGGGPLSLISQ 228 (431)
T ss_pred CCCC-CCCeeEEEe-CCCCceeeEEEEEEEEeccCCCC-cceeCCEEEeCCCCCCCCccC--CCceeEecCCCCccHHHH
Confidence 7543 469999999 78888899999999999864321 356889999999988776532 358999999999999999
Q ss_pred HhhcCCCCceeEEeeCC-----CCCeeEEeCCCCCC---CCcccccccCCCCCeeEEEEEEEEECCEEeeccC-------
Q 013377 259 LANQGLIPNSFSMCFGS-----DGTGRISFGDKGSP---GQGETPFSLRQTHPTYNITITQVSVGGNAVNFEF------- 323 (444)
Q Consensus 259 l~~~g~i~~~FS~~L~~-----~~~G~l~fG~~d~~---~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~~------- 323 (444)
|... +.++|||||.+ ...|.|+||+.... ...+||++......+|.|.|++|+||++.+.++.
T Consensus 229 l~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~ 306 (431)
T PLN03146 229 LGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVE 306 (431)
T ss_pred hhHh--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCC
Confidence 9753 45699999975 23799999985321 3567888865445789999999999999887642
Q ss_pred --cEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEE
Q 013377 324 --SAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVI 401 (444)
Q Consensus 324 --~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~ 401 (444)
.+||||||++++||+++|++|+++|.+.+...... .....++.||+... ...+|+|+|+| +|+++.|++++|+
T Consensus 307 ~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~-~~~~~~~~C~~~~~---~~~~P~i~~~F-~Ga~~~l~~~~~~ 381 (431)
T PLN03146 307 EGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVS-DPQGLLSLCYSSTS---DIKLPIITAHF-TGADVKLQPLNTF 381 (431)
T ss_pred CCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCC-CCCCCCCccccCCC---CCCCCeEEEEE-CCCeeecCcceeE
Confidence 68999999999999999999999999988643322 22334678998532 25799999999 6899999999888
Q ss_pred EEeCCCCeeEEEEEEEeCCCceEeccceeeeeEEEEeCCCCC
Q 013377 402 VSSEPKGLYLYCLGVVKSDNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 402 ~~~~~~~~~~~Cl~~~~~~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
+....+ .+|+++....+.||||+.|||++|||||.++.+
T Consensus 382 ~~~~~~---~~Cl~~~~~~~~~IlG~~~q~~~~vvyDl~~~~ 420 (431)
T PLN03146 382 VKVSED---LVCFAMIPTSSIAIFGNLAQMNFLVGYDLESKT 420 (431)
T ss_pred EEcCCC---cEEEEEecCCCceEECeeeEeeEEEEEECCCCE
Confidence 875443 579998876668999999999999999999864
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-53 Score=430.90 Aligned_cols=319 Identities=33% Similarity=0.561 Sum_probs=263.6
Q ss_pred cCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CC-CCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCC
Q 013377 100 SLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CV-SCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK 177 (444)
Q Consensus 100 ~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~-~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~ 177 (444)
+.+.+|+++|.||||||.|.|++||||+++||+|. |. .|..+.. +.|||++|+|++.+.|.++.|....
T Consensus 42 ~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~---------~~f~p~~SSt~~~~~c~~~~c~~~~ 112 (398)
T KOG1339|consen 42 YSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHN---------PIFDPSASSTYKSVGCSSPRCKSLP 112 (398)
T ss_pred ccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCC---------CccCccccccccccCCCCccccccc
Confidence 45568999999999999999999999999999999 87 6765421 4599999999999999999999986
Q ss_pred CCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCC-CCCceEEeeCCCCCChH
Q 013377 178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDG-AAPNGLFGLGMDKTSVP 256 (444)
Q Consensus 178 ~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~-~~~dGIlGLg~~~~S~~ 256 (444)
.|..+++.|.|.+.| +|++.+.|.+++|+|+|++.+ .+..+++.|||+..+.+. +.. .+.|||||||++++|++
T Consensus 113 ~~~~~~~~C~y~i~Y-gd~~~~~G~l~~Dtv~~~~~~---~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~ 187 (398)
T KOG1339|consen 113 QSCSPNSSCPYSIQY-GDGSSTSGYLATDTVTFGGTT---SLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVP 187 (398)
T ss_pred cCcccCCcCceEEEe-CCCCceeEEEEEEEEEEcccc---ccccccEEEEeeecCccc-cccccccceEeecCCCCccce
Confidence 666667899999999 788899999999999998643 356678999999999876 333 56799999999999999
Q ss_pred HHHhhcCCCCceeEEeeCCC-----CCeeEEeCCCCCC-CCc---ccccccCCCCCeeEEEEEEEEECCEE------eec
Q 013377 257 SILANQGLIPNSFSMCFGSD-----GTGRISFGDKGSP-GQG---ETPFSLRQTHPTYNITITQVSVGGNA------VNF 321 (444)
Q Consensus 257 ~ql~~~g~i~~~FS~~L~~~-----~~G~l~fG~~d~~-~~~---~~~~~~~~~~~~y~v~l~~i~vg~~~------~~~ 321 (444)
+|+...+...++||+||.++ ..|.|+||++|.. ..+ ++|++.... .+|.|.+++|+||++. ...
T Consensus 188 ~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~-~~y~v~l~~I~vgg~~~~~~~~~~~ 266 (398)
T KOG1339|consen 188 SQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS-TYYQVNLDGISVGGKRPIGSSLFCT 266 (398)
T ss_pred eecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC-ccEEEEEeEEEECCccCCCcceEec
Confidence 99998877666899999984 3799999999988 455 677766554 5999999999999843 223
Q ss_pred c-CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeE
Q 013377 322 E-FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIV 400 (444)
Q Consensus 322 ~-~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~ 400 (444)
+ .++|+||||++++||+++|++|.++|.+.+.. ....+.+++.|+...... ..+|.|+|+|.+|+.|.|++++|
T Consensus 267 ~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~---~~~~~~~~~~C~~~~~~~--~~~P~i~~~f~~g~~~~l~~~~y 341 (398)
T KOG1339|consen 267 DGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV---VGTDGEYFVPCFSISTSG--VKLPDITFHFGGGAVFSLPPKNY 341 (398)
T ss_pred CCCCEEEECCcceeeccHHHHHHHHHHHHhheec---cccCCceeeecccCCCCc--ccCCcEEEEECCCcEEEeCccce
Confidence 2 67999999999999999999999999987511 111133556899874311 34999999996599999999999
Q ss_pred EEEeCCCCeeEEEEEEEeCCC---ceEeccceeeeeEEEEeCC
Q 013377 401 IVSSEPKGLYLYCLGVVKSDN---VNIIGREYPIANNISLFHN 440 (444)
Q Consensus 401 ~~~~~~~~~~~~Cl~~~~~~~---~~IlG~~fl~~~yvvfD~~ 440 (444)
++...... ..|++++...+ .||||+.||++++++||..
T Consensus 342 ~~~~~~~~--~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~ 382 (398)
T KOG1339|consen 342 LVEVSDGG--GVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLG 382 (398)
T ss_pred EEEECCCC--CceeeEEecCCCCceEEEchHHhCCEEEEEeCC
Confidence 99865542 12999887643 7999999999999999995
No 3
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.5e-52 Score=410.28 Aligned_cols=297 Identities=21% Similarity=0.302 Sum_probs=236.6
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCC
Q 013377 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK 177 (444)
Q Consensus 99 ~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~ 177 (444)
|+.+.+|+++|.||||+|+|.|++||||+++||+|. |..|. ..| ..++.|||++|+|++..
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~-~~C------~~~~~y~~~~SsT~~~~----------- 62 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLD-IAC------WLHHKYNSSKSSTYVKN----------- 62 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCC-ccc------cCcCcCCcccCcceeeC-----------
Confidence 467889999999999999999999999999999998 65331 122 24589999999999873
Q ss_pred CCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCC---
Q 013377 178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS--- 254 (444)
Q Consensus 178 ~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S--- 254 (444)
+|.|.+.| ++| .+.|.+++|+|+|++ ..++++.|||++.+.+..+.....|||||||++..+
T Consensus 63 -------~~~~~i~Y-g~G-~~~G~~~~D~v~~g~------~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~ 127 (325)
T cd05490 63 -------GTEFAIQY-GSG-SLSGYLSQDTVSIGG------LQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDG 127 (325)
T ss_pred -------CcEEEEEE-CCc-EEEEEEeeeEEEECC------EEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccC
Confidence 68999999 565 579999999999984 467899999999877643333456999999997654
Q ss_pred ---hHHHHhhcCCC-CceeEEeeCCC----CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEee--ccC
Q 013377 255 ---VPSILANQGLI-PNSFSMCFGSD----GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVN--FEF 323 (444)
Q Consensus 255 ---~~~ql~~~g~i-~~~FS~~L~~~----~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~--~~~ 323 (444)
+.++|+++++| +++||+||.++ ..|+|+||++|++ +.+.+.|++.....+|.|++++|+||++... ...
T Consensus 128 ~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~ 207 (325)
T cd05490 128 VTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLTLCKGGC 207 (325)
T ss_pred CCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeeeecCCCC
Confidence 56799999999 89999999862 3699999999987 5667777776666799999999999987543 235
Q ss_pred cEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEE
Q 013377 324 SAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVS 403 (444)
Q Consensus 324 ~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~ 403 (444)
.+||||||+++++|++++++|.+++.+. . . ....+...|... ..+|+|+|+| +|+.++|++++|++.
T Consensus 208 ~aiiDSGTt~~~~p~~~~~~l~~~~~~~-~---~--~~~~~~~~C~~~------~~~P~i~f~f-gg~~~~l~~~~y~~~ 274 (325)
T cd05490 208 EAIVDTGTSLITGPVEEVRALQKAIGAV-P---L--IQGEYMIDCEKI------PTLPVISFSL-GGKVYPLTGEDYILK 274 (325)
T ss_pred EEEECCCCccccCCHHHHHHHHHHhCCc-c---c--cCCCEEeccccc------ccCCCEEEEE-CCEEEEEChHHeEEe
Confidence 7999999999999999999999888542 1 1 112223345432 5789999999 899999999999886
Q ss_pred eCC-CCeeEEEEEEEeC-------CCceEeccceeeeeEEEEeCCCCC
Q 013377 404 SEP-KGLYLYCLGVVKS-------DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 404 ~~~-~~~~~~Cl~~~~~-------~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
... +. ..|++.+.. .+.||||++|||++|+|||.++.+
T Consensus 275 ~~~~~~--~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~ 320 (325)
T cd05490 275 VSQRGT--TICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDR 320 (325)
T ss_pred ccCCCC--CEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcE
Confidence 432 22 469864422 237999999999999999999874
No 4
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=5e-52 Score=407.70 Aligned_cols=292 Identities=24% Similarity=0.367 Sum_probs=239.4
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCC
Q 013377 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK 177 (444)
Q Consensus 99 ~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~ 177 (444)
|+.+.+|+++|.||||+|++.|++||||+++||+|. |..| .| ..++.|||++|+|++..
T Consensus 5 n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~---~c------~~~~~f~~~~Sst~~~~----------- 64 (317)
T cd05478 5 NYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQ---AC------SNHNRFNPRQSSTYQST----------- 64 (317)
T ss_pred cccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcc---cc------cccCcCCCCCCcceeeC-----------
Confidence 677899999999999999999999999999999998 6442 33 23489999999999985
Q ss_pred CCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC----
Q 013377 178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT---- 253 (444)
Q Consensus 178 ~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~---- 253 (444)
.+.|.+.| ++|+ +.|.+++|+|+|++ +.++++.|||++...+.+......|||||||++.+
T Consensus 65 -------~~~~~~~y-g~gs-~~G~~~~D~v~ig~------~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~ 129 (317)
T cd05478 65 -------GQPLSIQY-GTGS-MTGILGYDTVQVGG------ISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSG 129 (317)
T ss_pred -------CcEEEEEE-CCce-EEEEEeeeEEEECC------EEECCEEEEEEEecCccccccccccceeeeccchhcccC
Confidence 68999999 5655 79999999999984 46789999999887766544445699999998754
Q ss_pred --ChHHHHhhcCCC-CceeEEeeCCC--CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeec--cCcE
Q 013377 254 --SVPSILANQGLI-PNSFSMCFGSD--GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF--EFSA 325 (444)
Q Consensus 254 --S~~~ql~~~g~i-~~~FS~~L~~~--~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~--~~~~ 325 (444)
++..+|+++|+| +++||+||.++ ..|+|+||++|++ +.+.+.|++.....+|.|.+++|+||++.+.. +..+
T Consensus 130 ~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~~~~~~~~ 209 (317)
T cd05478 130 ATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVACSGGCQA 209 (317)
T ss_pred CCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEccCCCCEE
Confidence 478899999999 89999999984 3699999999987 56677777766678999999999999998864 3579
Q ss_pred EEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEeC
Q 013377 326 IFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSE 405 (444)
Q Consensus 326 iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~ 405 (444)
||||||++++||+++|++|.+++.+... .. .++.++|... .++|.|+|+| +|+.++|++++|+...
T Consensus 210 iiDTGts~~~lp~~~~~~l~~~~~~~~~------~~-----~~~~~~C~~~-~~~P~~~f~f-~g~~~~i~~~~y~~~~- 275 (317)
T cd05478 210 IVDTGTSLLVGPSSDIANIQSDIGASQN------QN-----GEMVVNCSSI-SSMPDVVFTI-NGVQYPLPPSAYILQD- 275 (317)
T ss_pred EECCCchhhhCCHHHHHHHHHHhCCccc------cC-----CcEEeCCcCc-ccCCcEEEEE-CCEEEEECHHHheecC-
Confidence 9999999999999999999988854321 00 1334444322 5789999999 8899999999888764
Q ss_pred CCCeeEEEEEEEeC-C--CceEeccceeeeeEEEEeCCCCC
Q 013377 406 PKGLYLYCLGVVKS-D--NVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 406 ~~~~~~~Cl~~~~~-~--~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
. ..|++.+.. . +.||||++|||++|+|||.++.+
T Consensus 276 ~----~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~ 312 (317)
T cd05478 276 Q----GSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNK 312 (317)
T ss_pred C----CEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCE
Confidence 2 469864433 2 37999999999999999999864
No 5
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2.2e-51 Score=418.76 Aligned_cols=298 Identities=19% Similarity=0.295 Sum_probs=238.3
Q ss_pred ceeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCcc
Q 013377 94 DTYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTL 172 (444)
Q Consensus 94 ~~~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~ 172 (444)
...++ |+.+.+|+++|.||||||+|.|++||||+++||+|. .|....| ..|+.|||++|+||+.+.+..
T Consensus 109 ~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~--~C~~~~C------~~~~~yd~s~SSTy~~~~~~~-- 178 (482)
T PTZ00165 109 LQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSK--ECKSGGC------APHRKFDPKKSSTYTKLKLGD-- 178 (482)
T ss_pred cceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEch--hcCcccc------cccCCCCccccCCcEecCCCC--
Confidence 34455 899999999999999999999999999999999998 3333333 245899999999999853211
Q ss_pred CCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCC
Q 013377 173 CELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK 252 (444)
Q Consensus 173 C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~ 252 (444)
....+.+.| ++| .+.|.+++|+|+|++ +.++++.|||++...+..+.....|||||||++.
T Consensus 179 -----------~~~~~~i~Y-GsG-s~~G~l~~DtV~ig~------l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~ 239 (482)
T PTZ00165 179 -----------ESAETYIQY-GTG-ECVLALGKDTVKIGG------LKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPD 239 (482)
T ss_pred -----------ccceEEEEe-CCC-cEEEEEEEEEEEECC------EEEccEEEEEEEeccccccccccccceeecCCCc
Confidence 112577999 454 577999999999984 5789999999998876545555679999999986
Q ss_pred C---------ChHHHHhhcCCC-CceeEEeeCC--CCCeeEEeCCCCCCC---CcccccccCCCCCeeEEEEEEEEECCE
Q 013377 253 T---------SVPSILANQGLI-PNSFSMCFGS--DGTGRISFGDKGSPG---QGETPFSLRQTHPTYNITITQVSVGGN 317 (444)
Q Consensus 253 ~---------S~~~ql~~~g~i-~~~FS~~L~~--~~~G~l~fG~~d~~~---~~~~~~~~~~~~~~y~v~l~~i~vg~~ 317 (444)
+ ++..+|.+||++ +++||+||.+ +.+|+|+||++|+.+ .+.+.|++.....||.|.+++|+||++
T Consensus 240 ~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~ 319 (482)
T PTZ00165 240 KDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGK 319 (482)
T ss_pred ccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccccceEEEEeCeEEECCE
Confidence 4 467899999999 8999999986 346999999999862 356778877777899999999999998
Q ss_pred Eeec---cCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCc---
Q 013377 318 AVNF---EFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGG--- 391 (444)
Q Consensus 318 ~~~~---~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~--- 391 (444)
.+.. ...+|+||||+++++|+++|++|.+++... ..|... ..+|+|+|+| +|.
T Consensus 320 ~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~--------------~~C~~~------~~lP~itf~f-~g~~g~ 378 (482)
T PTZ00165 320 SLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE--------------EDCSNK------DSLPRISFVL-EDVNGR 378 (482)
T ss_pred EeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc--------------cccccc------ccCCceEEEE-CCCCCc
Confidence 7754 367999999999999999999888877421 147654 5789999999 543
Q ss_pred --cEEEcCCeEEEEe---CCCCeeEEEEE-EEeC------CCceEeccceeeeeEEEEeCCCCC
Q 013377 392 --PFFVNDPIVIVSS---EPKGLYLYCLG-VVKS------DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 392 --~~~l~~~~~~~~~---~~~~~~~~Cl~-~~~~------~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
+|.|++++|++.. ..+. ..|+. +... .+.||||++|||+||+|||.++.+
T Consensus 379 ~v~~~l~p~dYi~~~~~~~~~~--~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~r 440 (482)
T PTZ00165 379 KIKFDMDPEDYVIEEGDSEEQE--HQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMM 440 (482)
T ss_pred eEEEEEchHHeeeecccCCCCC--CeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCE
Confidence 8999999998863 2222 57964 4432 237999999999999999999864
No 6
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=5.5e-51 Score=400.14 Aligned_cols=289 Identities=21% Similarity=0.334 Sum_probs=231.2
Q ss_pred EEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCCCCCCCC
Q 013377 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAGS 184 (444)
Q Consensus 105 y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~C~~~~~ 184 (444)
|+++|.||||+|+|+|+|||||+++||+|. .|..+.| ..++.|||++|+|++..
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~--~C~~~~C------~~~~~y~~~~SsT~~~~------------------ 54 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSI--YCTSQAC------TKHNRFQPSESSTYVSN------------------ 54 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecC--CCCCccc------CccceECCCCCcccccC------------------
Confidence 789999999999999999999999999998 3333333 23488999999999885
Q ss_pred CccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCC------hHHH
Q 013377 185 NCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS------VPSI 258 (444)
Q Consensus 185 ~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S------~~~q 258 (444)
.|.|++.| ++| .+.|.+++|+|+|++ +.++++.|||+..+.+..+.....|||||||++.++ +..+
T Consensus 55 ~~~~~i~Y-g~g-~~~G~~~~D~v~ig~------~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~ 126 (316)
T cd05486 55 GEAFSIQY-GTG-SLTGIIGIDQVTVEG------ITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDN 126 (316)
T ss_pred CcEEEEEe-CCc-EEEEEeeecEEEECC------EEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHH
Confidence 78999999 565 589999999999984 567899999998776644444457999999997654 5789
Q ss_pred HhhcCCC-CceeEEeeCCC----CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeec--cCcEEEecc
Q 013377 259 LANQGLI-PNSFSMCFGSD----GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF--EFSAIFDSG 330 (444)
Q Consensus 259 l~~~g~i-~~~FS~~L~~~----~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~--~~~~iiDSG 330 (444)
|++|++| +++||+||.++ ..|+|+||++|++ +.+.+.|++.....+|.|.+++|+||++.+.. ...+|||||
T Consensus 127 l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTG 206 (316)
T cd05486 127 MMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIFCSDGCQAIVDTG 206 (316)
T ss_pred HHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCceEEEEEeeEEEEecceEecCCCCEEEECCC
Confidence 9999999 89999999863 3699999999987 55666777666678999999999999988754 357999999
Q ss_pred ccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEeC-CCCe
Q 013377 331 TSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSE-PKGL 409 (444)
Q Consensus 331 Ts~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~-~~~~ 409 (444)
|++++||++++++|.+++.+.. .+ . +|.++|... ..+|+|+|+| +|+.++|++++|++... .+.
T Consensus 207 Ts~~~lP~~~~~~l~~~~~~~~------~~-~-----~~~~~C~~~-~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~- 271 (316)
T cd05486 207 TSLITGPSGDIKQLQNYIGATA------TD-G-----EYGVDCSTL-SLMPSVTFTI-NGIPYSLSPQAYTLEDQSDGG- 271 (316)
T ss_pred cchhhcCHHHHHHHHHHhCCcc------cC-C-----cEEEecccc-ccCCCEEEEE-CCEEEEeCHHHeEEecccCCC-
Confidence 9999999999999887774321 01 1 233444222 5799999999 88999999999888642 222
Q ss_pred eEEEEEEEeC-------CCceEeccceeeeeEEEEeCCCCC
Q 013377 410 YLYCLGVVKS-------DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 410 ~~~Cl~~~~~-------~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
..|+..+.. .+.||||++|||++|+|||.++.+
T Consensus 272 -~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~ 311 (316)
T cd05486 272 -GYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNR 311 (316)
T ss_pred -CEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCE
Confidence 469854322 137999999999999999999874
No 7
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.2e-50 Score=397.40 Aligned_cols=291 Identities=21% Similarity=0.387 Sum_probs=232.8
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCCCCCC
Q 013377 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSA 182 (444)
Q Consensus 104 ~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~C~~~ 182 (444)
+|+++|.||||+|++.|+|||||+++||+|. |..|..+. ++.|||++|+|++.++|++..|.....|.
T Consensus 3 ~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~---------~~~y~~~~Sst~~~~~C~~~~c~~~~~~~-- 71 (326)
T cd06096 3 YYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHM---------EPPYNLNNSITSSILYCDCNKCCYCLSCL-- 71 (326)
T ss_pred eEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCC---------CCCcCcccccccccccCCCccccccCcCC--
Confidence 6999999999999999999999999999999 88886532 38899999999999999999996544553
Q ss_pred CCCccceEEECCCCceEEeEEEEEEEEecCCCCCc-ccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCC----hHH
Q 013377 183 GSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQS-KSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS----VPS 257 (444)
Q Consensus 183 ~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~-~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S----~~~ 257 (444)
++.|.|.+.| ++|+.+.|.+++|+|+|++..... .....++.|||+..+.+.+... ..+||||||+...+ ...
T Consensus 72 ~~~~~~~i~Y-~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~-~~~GilGLg~~~~~~~~~~~~ 149 (326)
T cd06096 72 NNKCEYSISY-SEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQ-QATGILGLSLTKNNGLPTPII 149 (326)
T ss_pred CCcCcEEEEE-CCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCccccc-ccceEEEccCCcccccCchhH
Confidence 4579999999 777789999999999998643110 0122367899999887765433 46999999998743 223
Q ss_pred HHhhcCCC-C--ceeEEeeCCCCCeeEEeCCCCCC-CC----------cccccccCCCCCeeEEEEEEEEECCEE--e--
Q 013377 258 ILANQGLI-P--NSFSMCFGSDGTGRISFGDKGSP-GQ----------GETPFSLRQTHPTYNITITQVSVGGNA--V-- 319 (444)
Q Consensus 258 ql~~~g~i-~--~~FS~~L~~~~~G~l~fG~~d~~-~~----------~~~~~~~~~~~~~y~v~l~~i~vg~~~--~-- 319 (444)
+|.+++.+ . ++||+||.++ .|.|+||++|+. .. +.+.|++.....+|.|.+++|+|+++. .
T Consensus 150 ~l~~~~~~~~~~~~FS~~l~~~-~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~ 228 (326)
T cd06096 150 LLFTKRPKLKKDKIFSICLSED-GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGN 228 (326)
T ss_pred HHHHhcccccCCceEEEEEcCC-CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceec
Confidence 45566555 4 9999999974 599999999976 22 455666655567899999999999885 2
Q ss_pred eccCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCe
Q 013377 320 NFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPI 399 (444)
Q Consensus 320 ~~~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~ 399 (444)
..+..+||||||++++||+++|++|.+++ |+|+|+|.+|+.++|+|++
T Consensus 229 ~~~~~aivDSGTs~~~lp~~~~~~l~~~~--------------------------------P~i~~~f~~g~~~~i~p~~ 276 (326)
T cd06096 229 TKGLGMLVDSGSTLSHFPEDLYNKINNFF--------------------------------PTITIIFENNLKIDWKPSS 276 (326)
T ss_pred ccCCCEEEeCCCCcccCCHHHHHHHHhhc--------------------------------CcEEEEEcCCcEEEECHHH
Confidence 23467999999999999999998887665 7999999558999999999
Q ss_pred EEEEeCCCCeeEEEEEEEeCCCceEeccceeeeeEEEEeCCCCC
Q 013377 400 VIVSSEPKGLYLYCLGVVKSDNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 400 ~~~~~~~~~~~~~Cl~~~~~~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
|++...+. ..|+.+....+.+|||++|||++|+|||.++.+
T Consensus 277 y~~~~~~~---~c~~~~~~~~~~~ILG~~flr~~y~vFD~~~~r 317 (326)
T cd06096 277 YLYKKESF---WCKGGEKSVSNKPILGASFFKNKQIIFDLDNNR 317 (326)
T ss_pred hccccCCc---eEEEEEecCCCceEEChHHhcCcEEEEECcCCE
Confidence 98865443 335555544558999999999999999999864
No 8
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=5.3e-50 Score=398.01 Aligned_cols=304 Identities=24% Similarity=0.392 Sum_probs=239.7
Q ss_pred ecCCCeE-EEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCC------------
Q 013377 111 VGQPALS-FIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK------------ 177 (444)
Q Consensus 111 iGtP~q~-~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~------------ 177 (444)
+|||-.+ |.|++||||+++||+|. |.+|+||+.++|+++.|+...
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~----------------------~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~ 59 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD----------------------AGHSSTYQTVPCSSSVCSLANRYHCPGTCGGAP 59 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC----------------------CCCcCCCCccCcCChhhccccccCCCccccCCC
Confidence 6888777 99999999999999996 247889999999999998641
Q ss_pred --CCCCCCCCccceEE-ECCCCceEEeEEEEEEEEecCCCCCc--ccccceeEEEeeeeeccccCCCCCCceEEeeCCCC
Q 013377 178 --QCPSAGSNCPYQVR-YLSDGTMSTGFLVEDVLHLATDEKQS--KSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK 252 (444)
Q Consensus 178 --~C~~~~~~~~~~~~-Y~~d~~~~~G~l~~D~v~i~~~~~~~--~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~ 252 (444)
.|. ++.|.|... | .+++.+.|++++|+|+|+..++.. ...++++.|||+.++....+. ...|||||||+++
T Consensus 60 ~~~c~--~~~C~y~~~~y-~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~-~~~dGIlGLg~~~ 135 (362)
T cd05489 60 GPGCG--NNTCTAHPYNP-VTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLP-PGAQGVAGLGRSP 135 (362)
T ss_pred CCCCC--CCcCeeEcccc-ccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCc-cccccccccCCCc
Confidence 342 245888654 6 577899999999999998644321 136889999999886432122 2369999999999
Q ss_pred CChHHHHhhcCCCCceeEEeeCC--CCCeeEEeCCCCCC----------CCcccccccCC-CCCeeEEEEEEEEECCEEe
Q 013377 253 TSVPSILANQGLIPNSFSMCFGS--DGTGRISFGDKGSP----------GQGETPFSLRQ-THPTYNITITQVSVGGNAV 319 (444)
Q Consensus 253 ~S~~~ql~~~g~i~~~FS~~L~~--~~~G~l~fG~~d~~----------~~~~~~~~~~~-~~~~y~v~l~~i~vg~~~~ 319 (444)
+|+++||..++..+++|||||.+ +.+|.|+||+.+.. ...++|++..+ ...+|.|+|++|+||++.+
T Consensus 136 lSl~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l 215 (362)
T cd05489 136 LSLPAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAV 215 (362)
T ss_pred cchHHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEEC
Confidence 99999999876567999999987 35799999998742 46788887655 2468999999999999988
Q ss_pred ecc-----------CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCC---CCCCcCCCeEEE
Q 013377 320 NFE-----------FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSP---NQTNFEYPVVNL 385 (444)
Q Consensus 320 ~~~-----------~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~---~~~~~~~P~i~~ 385 (444)
.++ .++||||||++|+||+++|++|.++|.+++.............+.||+... ......+|+|+|
T Consensus 216 ~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~ 295 (362)
T cd05489 216 PLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDL 295 (362)
T ss_pred CCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEE
Confidence 753 369999999999999999999999999887654321111222368998542 111368999999
Q ss_pred EEcC-CccEEEcCCeEEEEeCCCCeeEEEEEEEeCC----CceEeccceeeeeEEEEeCCCCC
Q 013377 386 TMKG-GGPFFVNDPIVIVSSEPKGLYLYCLGVVKSD----NVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 386 ~f~g-g~~~~l~~~~~~~~~~~~~~~~~Cl~~~~~~----~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
+|+| |++|+|++++|+++... + .+|+++.... +.||||+.|||++|+|||.++.+
T Consensus 296 ~f~g~g~~~~l~~~ny~~~~~~-~--~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~r 355 (362)
T cd05489 296 VLDGGGVNWTIFGANSMVQVKG-G--VACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSR 355 (362)
T ss_pred EEeCCCeEEEEcCCceEEEcCC-C--cEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCE
Confidence 9976 79999999999997543 3 5799988653 37999999999999999999864
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2.9e-50 Score=395.43 Aligned_cols=290 Identities=22% Similarity=0.371 Sum_probs=234.0
Q ss_pred CceEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCCCCC
Q 013377 102 GFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPS 181 (444)
Q Consensus 102 ~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~C~~ 181 (444)
|..|+++|.||||||++.|++||||+++||+|. .|..+.| ..++.|||++|+|++..
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~--~C~~~~C------~~~~~f~~~~SsT~~~~--------------- 57 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSV--LCQSQAC------TNHTKFNPSQSSTYSTN--------------- 57 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccC--CCCCccc------cccCCCCcccCCCceEC---------------
Confidence 357999999999999999999999999999998 3333333 23489999999999984
Q ss_pred CCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCC------CCh
Q 013377 182 AGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK------TSV 255 (444)
Q Consensus 182 ~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~------~S~ 255 (444)
.|.|++.| ++|+ +.|.+++|+|+|++ +.++++.|||++...+..+.....+||||||++. .++
T Consensus 58 ---~~~~~~~Y-g~Gs-~~G~~~~D~i~~g~------~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~ 126 (318)
T cd05477 58 ---GETFSLQY-GSGS-LTGIFGYDTVTVQG------IIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTV 126 (318)
T ss_pred ---CcEEEEEE-CCcE-EEEEEEeeEEEECC------EEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCH
Confidence 78999999 5654 79999999999984 5678999999998765433333469999999853 568
Q ss_pred HHHHhhcCCC-CceeEEeeCCC---CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeec---cCcEEE
Q 013377 256 PSILANQGLI-PNSFSMCFGSD---GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF---EFSAIF 327 (444)
Q Consensus 256 ~~ql~~~g~i-~~~FS~~L~~~---~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~---~~~~ii 327 (444)
+.+|+++|+| +++||+||.++ ..|.|+||++|++ +.+.+.|++.....+|.|++++|+||++.+.. +..+||
T Consensus 127 ~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~ii 206 (318)
T cd05477 127 MQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIV 206 (318)
T ss_pred HHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeE
Confidence 8999999999 89999999873 4699999999987 55566666666678999999999999998753 357999
Q ss_pred eccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEeCCC
Q 013377 328 DSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPK 407 (444)
Q Consensus 328 DSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~ 407 (444)
||||++++||+++|++|++++.+.... . .+|.++|... ..+|+|+|+| +|+++.|++++|+... .
T Consensus 207 DSGtt~~~lP~~~~~~l~~~~~~~~~~------~-----~~~~~~C~~~-~~~p~l~~~f-~g~~~~v~~~~y~~~~-~- 271 (318)
T cd05477 207 DTGTSLLTAPQQVMSTLMQSIGAQQDQ------Y-----GQYVVNCNNI-QNLPTLTFTI-NGVSFPLPPSAYILQN-N- 271 (318)
T ss_pred CCCCccEECCHHHHHHHHHHhCCcccc------C-----CCEEEeCCcc-ccCCcEEEEE-CCEEEEECHHHeEecC-C-
Confidence 999999999999999999988654321 1 1344455332 5789999999 8899999999888764 2
Q ss_pred CeeEEEE-EEEeC------C-CceEeccceeeeeEEEEeCCCCC
Q 013377 408 GLYLYCL-GVVKS------D-NVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 408 ~~~~~Cl-~~~~~------~-~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
..|+ ++... . +.||||+.|||++|+|||.++.+
T Consensus 272 ---~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ 312 (318)
T cd05477 272 ---GYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQ 312 (318)
T ss_pred ---CeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCE
Confidence 3597 45431 1 37999999999999999999864
No 10
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.4e-50 Score=397.93 Aligned_cols=293 Identities=20% Similarity=0.337 Sum_probs=235.6
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCC
Q 013377 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQ 178 (444)
Q Consensus 99 ~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~ 178 (444)
|+.+.+|+++|.||||+|++.|++||||+++||+|. .|....| ..++.|+|++|+|++..
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~--~C~~~~C------~~~~~y~~~~Sst~~~~------------ 64 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSV--KCGSIAC------FLHSKYDSSASSTYKAN------------ 64 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcC--CCCCccc------CCcceECCCCCcceeeC------------
Confidence 667889999999999999999999999999999998 3333333 23479999999999873
Q ss_pred CCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCCh---
Q 013377 179 CPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSV--- 255 (444)
Q Consensus 179 C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S~--- 255 (444)
.|.+.+.| ++| .+.|.+++|+++|++ +.++++.|||++...+..+.....|||||||+...+.
T Consensus 65 ------~~~~~~~y-~~g-~~~G~~~~D~v~ig~------~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~ 130 (320)
T cd05488 65 ------GTEFKIQY-GSG-SLEGFVSQDTLSIGD------LTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKI 130 (320)
T ss_pred ------CCEEEEEE-CCc-eEEEEEEEeEEEECC------EEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCC
Confidence 78999999 565 479999999999974 4678999999987766544444569999999987653
Q ss_pred ---HHHHhhcCCC-CceeEEeeCCC--CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeecc-CcEEE
Q 013377 256 ---PSILANQGLI-PNSFSMCFGSD--GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE-FSAIF 327 (444)
Q Consensus 256 ---~~ql~~~g~i-~~~FS~~L~~~--~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~-~~~ii 327 (444)
..+|.++|+| +++||+||.+. ..|.|+||++|+. +.+.+.|++.....+|.|++++|+||++.+..+ ..++|
T Consensus 131 ~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~iv 210 (320)
T cd05488 131 VPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELELENTGAAI 210 (320)
T ss_pred CCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEeccCCCeEEE
Confidence 3478899999 89999999973 5799999999987 555666666656679999999999999887653 67999
Q ss_pred eccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEeCCC
Q 013377 328 DSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPK 407 (444)
Q Consensus 328 DSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~ 407 (444)
||||++++||++++++|.+++.+... ...+|.++|... ..+|.|+|+| +|++++|++++|+++. .
T Consensus 211 DSGtt~~~lp~~~~~~l~~~~~~~~~-----------~~~~~~~~C~~~-~~~P~i~f~f-~g~~~~i~~~~y~~~~-~- 275 (320)
T cd05488 211 DTGTSLIALPSDLAEMLNAEIGAKKS-----------WNGQYTVDCSKV-DSLPDLTFNF-DGYNFTLGPFDYTLEV-S- 275 (320)
T ss_pred cCCcccccCCHHHHHHHHHHhCCccc-----------cCCcEEeecccc-ccCCCEEEEE-CCEEEEECHHHheecC-C-
Confidence 99999999999999998887743211 012444455332 5799999999 8899999999998753 2
Q ss_pred CeeEEEEEEEeC-------CCceEeccceeeeeEEEEeCCCCC
Q 013377 408 GLYLYCLGVVKS-------DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 408 ~~~~~Cl~~~~~-------~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
..|++.+.. .+.||||++|||++|+|||.++++
T Consensus 276 ---g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ 315 (320)
T cd05488 276 ---GSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNA 315 (320)
T ss_pred ---CeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCE
Confidence 359876542 237999999999999999999864
No 11
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2.2e-50 Score=397.73 Aligned_cols=298 Identities=21% Similarity=0.310 Sum_probs=237.8
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCC
Q 013377 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK 177 (444)
Q Consensus 99 ~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~ 177 (444)
|+.+.+|+++|.||||+|++.|++||||+++||+|. |..|.. .| ..++.|||++|+|++..
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~-~c------~~~~~y~~~~Sst~~~~----------- 67 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNI-AC------LLHNKYDSTKSSTYKKN----------- 67 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCc-cc------cCCCeECCcCCCCeEEC-----------
Confidence 688899999999999999999999999999999998 754321 12 13478999999999985
Q ss_pred CCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCC---
Q 013377 178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS--- 254 (444)
Q Consensus 178 ~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S--- 254 (444)
.|.|.+.| ++|+ +.|.+++|+++|++ ..++++.|||+..+.+..+.....+||||||++..+
T Consensus 68 -------~~~~~i~Y-~~g~-~~G~~~~D~v~ig~------~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ 132 (329)
T cd05485 68 -------GTEFAIQY-GSGS-LSGFLSTDTVSVGG------VSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDG 132 (329)
T ss_pred -------CeEEEEEE-CCce-EEEEEecCcEEECC------EEECCEEEEEEEecCCccccccccceEEEcCCccccccC
Confidence 68999999 5655 89999999999984 467899999998876643333456999999998765
Q ss_pred ---hHHHHhhcCCC-CceeEEeeCCC----CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeec-cCc
Q 013377 255 ---VPSILANQGLI-PNSFSMCFGSD----GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNF-EFS 324 (444)
Q Consensus 255 ---~~~ql~~~g~i-~~~FS~~L~~~----~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~-~~~ 324 (444)
+..+|++||+| ++.||+||.+. ..|+|+||++|+. +.+.+.+++.....+|.|.+++|+++++.+.. +..
T Consensus 133 ~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~~~~~~ 212 (329)
T cd05485 133 VVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFCSGGCQ 212 (329)
T ss_pred CCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeecCCCcE
Confidence 45799999999 89999999862 3699999999987 45566666655678999999999999987753 357
Q ss_pred EEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEe
Q 013377 325 AIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSS 404 (444)
Q Consensus 325 ~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~ 404 (444)
+||||||++++||+++|++|.+++.+.. . . ..||.++|... .++|+|+|+| +|+.++|++++|+++.
T Consensus 213 ~iiDSGtt~~~lP~~~~~~l~~~~~~~~----~--~-----~~~~~~~C~~~-~~~p~i~f~f-gg~~~~i~~~~yi~~~ 279 (329)
T cd05485 213 AIADTGTSLIAGPVDEIEKLNNAIGAKP----I--I-----GGEYMVNCSAI-PSLPDITFVL-GGKSFSLTGKDYVLKV 279 (329)
T ss_pred EEEccCCcceeCCHHHHHHHHHHhCCcc----c--c-----CCcEEEecccc-ccCCcEEEEE-CCEEeEEChHHeEEEe
Confidence 9999999999999999999888875421 1 1 12444455332 5789999999 8999999999988875
Q ss_pred CCCCeeEEEEEEEeC-------CCceEeccceeeeeEEEEeCCCCC
Q 013377 405 EPKGLYLYCLGVVKS-------DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 405 ~~~~~~~~Cl~~~~~-------~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
...+ ..+|+..+.. .+.||||+.|||++|+|||.++++
T Consensus 280 ~~~~-~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ 324 (329)
T cd05485 280 TQMG-QTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNR 324 (329)
T ss_pred cCCC-CCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCE
Confidence 4321 1579864331 137999999999999999999874
No 12
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.8e-50 Score=395.06 Aligned_cols=285 Identities=25% Similarity=0.351 Sum_probs=228.5
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCC
Q 013377 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK 177 (444)
Q Consensus 99 ~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~ 177 (444)
|+.+.+|+++|.||||+|+|.|++||||+++||+|. |.. ...| ..++.|||++|+|++..
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~--~~~C------~~~~~y~~~~SsT~~~~----------- 65 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYF--SIAC------YFHSKYKSSKSSTYKKN----------- 65 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCC--Cccc------cccCcCCcccCCCcccC-----------
Confidence 678899999999999999999999999999999998 631 1122 13488999999999984
Q ss_pred CCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCC---
Q 013377 178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS--- 254 (444)
Q Consensus 178 ~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S--- 254 (444)
.+.+.+.| ++| .+.|.+++|+|+|++ ..++++.|||++.+.+..+.....|||||||+...+
T Consensus 66 -------~~~~~i~Y-g~G-~~~G~~~~D~v~ig~------~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~ 130 (317)
T cd06098 66 -------GTSASIQY-GTG-SISGFFSQDSVTVGD------LVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGK 130 (317)
T ss_pred -------CCEEEEEc-CCc-eEEEEEEeeEEEECC------EEECCEEEEEEEecCCccccccccceeccccccchhhcC
Confidence 67889999 555 478999999999984 467899999999876543344457999999997654
Q ss_pred ---hHHHHhhcCCC-CceeEEeeCCC----CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeecc---
Q 013377 255 ---VPSILANQGLI-PNSFSMCFGSD----GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--- 322 (444)
Q Consensus 255 ---~~~ql~~~g~i-~~~FS~~L~~~----~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~--- 322 (444)
+..+|+++|+| +++||+||.++ ..|.|+||++|++ +.+.+.|++.....+|.|.+++|+||++.+...
T Consensus 131 ~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~ 210 (317)
T cd06098 131 AVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGG 210 (317)
T ss_pred CCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCC
Confidence 45689999999 89999999862 4699999999987 556667776666679999999999999987542
Q ss_pred CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEE
Q 013377 323 FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIV 402 (444)
Q Consensus 323 ~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~ 402 (444)
..+||||||++++||++++++|. +...|+.. .++|+|+|+| +|+.++|++++|++
T Consensus 211 ~~aivDTGTs~~~lP~~~~~~i~------------------~~~~C~~~------~~~P~i~f~f-~g~~~~l~~~~yi~ 265 (317)
T cd06098 211 CAAIADSGTSLLAGPTTIVTQIN------------------SAVDCNSL------SSMPNVSFTI-GGKTFELTPEQYIL 265 (317)
T ss_pred cEEEEecCCcceeCCHHHHHhhh------------------ccCCcccc------ccCCcEEEEE-CCEEEEEChHHeEE
Confidence 56999999999999997665542 11247654 5789999999 88999999999888
Q ss_pred EeCCCCeeEEEEEEEeC-------CCceEeccceeeeeEEEEeCCCCC
Q 013377 403 SSEPKGLYLYCLGVVKS-------DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 403 ~~~~~~~~~~Cl~~~~~-------~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
....+. ...|++.+.. .+.||||++|||++|+|||.++++
T Consensus 266 ~~~~~~-~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~ 312 (317)
T cd06098 266 KVGEGA-AAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLR 312 (317)
T ss_pred eecCCC-CCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCE
Confidence 643221 1479864421 137999999999999999999874
No 13
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=4.5e-50 Score=395.25 Aligned_cols=295 Identities=21% Similarity=0.373 Sum_probs=234.6
Q ss_pred ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCC
Q 013377 99 NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK 177 (444)
Q Consensus 99 ~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~ 177 (444)
|+.+.+|+++|.||||+|+++|++||||+++||+|. |..|.. .| ..++.|||++|+|++..
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~-~c------~~~~~y~~~~SsT~~~~----------- 64 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYT-AC------VTHNLYDASDSSTYKEN----------- 64 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcch-hh------cccCcCCCCCCeeeeEC-----------
Confidence 577889999999999999999999999999999998 655421 12 24589999999999984
Q ss_pred CCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC----
Q 013377 178 QCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT---- 253 (444)
Q Consensus 178 ~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~---- 253 (444)
.|.|++.| ++| .+.|.+++|+|+|++. .+ ++.||++....+.-+.....|||||||++..
T Consensus 65 -------~~~~~~~Y-g~g-~~~G~~~~D~v~~g~~------~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~ 128 (326)
T cd05487 65 -------GTEFTIHY-ASG-TVKGFLSQDIVTVGGI------PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGG 128 (326)
T ss_pred -------CEEEEEEe-CCc-eEEEEEeeeEEEECCE------Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccC
Confidence 78999999 565 5899999999999853 33 4789999876432122234699999999754
Q ss_pred --ChHHHHhhcCCC-CceeEEeeCCC----CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeecc--C
Q 013377 254 --SVPSILANQGLI-PNSFSMCFGSD----GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--F 323 (444)
Q Consensus 254 --S~~~ql~~~g~i-~~~FS~~L~~~----~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~--~ 323 (444)
++..+|++||.| +++||+||.++ ..|.|+||++|++ +.+.+.+++.....+|.|++++|+||++.+..+ .
T Consensus 129 ~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~ 208 (326)
T cd05487 129 VTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLLCEDGC 208 (326)
T ss_pred CCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEecCCCC
Confidence 456789999999 89999999863 3699999999987 566677777666789999999999999987643 5
Q ss_pred cEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEE
Q 013377 324 SAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVS 403 (444)
Q Consensus 324 ~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~ 403 (444)
.+||||||++++||.++|+++++++.+... .+ +|.++|... ..+|+|+|+| +|..++|++++|++.
T Consensus 209 ~aiiDSGts~~~lP~~~~~~l~~~~~~~~~-------~~-----~y~~~C~~~-~~~P~i~f~f-gg~~~~v~~~~yi~~ 274 (326)
T cd05487 209 TAVVDTGASFISGPTSSISKLMEALGAKER-------LG-----DYVVKCNEV-PTLPDISFHL-GGKEYTLSSSDYVLQ 274 (326)
T ss_pred EEEECCCccchhCcHHHHHHHHHHhCCccc-------CC-----CEEEecccc-CCCCCEEEEE-CCEEEEeCHHHhEEe
Confidence 699999999999999999999988854321 11 233344322 5789999999 899999999988886
Q ss_pred eCC-CCeeEEEEEEEeC-------CCceEeccceeeeeEEEEeCCCCC
Q 013377 404 SEP-KGLYLYCLGVVKS-------DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 404 ~~~-~~~~~~Cl~~~~~-------~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
... .. ..|+..+.. .+.||||++|||++|+|||.++.+
T Consensus 275 ~~~~~~--~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~ 320 (326)
T cd05487 275 DSDFSD--KLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNR 320 (326)
T ss_pred ccCCCC--CEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCE
Confidence 532 22 579754331 137999999999999999999864
No 14
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=4.6e-49 Score=383.72 Aligned_cols=276 Identities=31% Similarity=0.508 Sum_probs=224.5
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCCCCCCC
Q 013377 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAG 183 (444)
Q Consensus 104 ~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~C~~~~ 183 (444)
+|+++|.||||||++.|++||||+++||+|. .|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~--~c--------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ--PC--------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC--CC---------------------------------------------
Confidence 4999999999999999999999999999885 11
Q ss_pred CCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCChHHHHhhcC
Q 013377 184 SNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQG 263 (444)
Q Consensus 184 ~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S~~~ql~~~g 263 (444)
|.|.+.| ++|+.+.|.+++|+|+|++. ..++++.|||+....+.+. ..+||||||+..+|+++|+..+
T Consensus 34 --~~~~i~Y-g~Gs~~~G~~~~D~v~ig~~-----~~~~~~~Fg~~~~~~~~~~---~~~GilGLg~~~~s~~~ql~~~- 101 (299)
T cd05472 34 --CLYQVSY-GDGSYTTGDLATDTLTLGSS-----DVVPGFAFGCGHDNEGLFG---GAAGLLGLGRGKLSLPSQTASS- 101 (299)
T ss_pred --CeeeeEe-CCCceEEEEEEEEEEEeCCC-----CccCCEEEECCccCCCccC---CCCEEEECCCCcchHHHHhhHh-
Confidence 5789999 78888899999999999853 1568999999998876542 4689999999999999998765
Q ss_pred CCCceeEEeeCC---CCCeeEEeCCCCCC--CCcccccccCCC-CCeeEEEEEEEEECCEEeecc------CcEEEeccc
Q 013377 264 LIPNSFSMCFGS---DGTGRISFGDKGSP--GQGETPFSLRQT-HPTYNITITQVSVGGNAVNFE------FSAIFDSGT 331 (444)
Q Consensus 264 ~i~~~FS~~L~~---~~~G~l~fG~~d~~--~~~~~~~~~~~~-~~~y~v~l~~i~vg~~~~~~~------~~~iiDSGT 331 (444)
.+++||+||.+ +..|+|+||++|+. ...++|++..+. ..+|.|+|++|+||++.+..+ ..+||||||
T Consensus 102 -~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGT 180 (299)
T cd05472 102 -YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGT 180 (299)
T ss_pred -hcCceEEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCC
Confidence 36899999987 45799999999985 566777765543 358999999999999988652 479999999
Q ss_pred cccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEeCCCCeeE
Q 013377 332 SFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYL 411 (444)
Q Consensus 332 s~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~~~ 411 (444)
++++||+++|++|.+++.+.+........ ...++.||..++.. ...+|+|+|+|.+|++++|++++|++...... .
T Consensus 181 t~~~lp~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~C~~~~~~~-~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~--~ 256 (299)
T cd05472 181 VITRLPPSAYAALRDAFRAAMAAYPRAPG-FSILDTCYDLSGFR-SVSVPTVSLHFQGGADVELDASGVLYPVDDSS--Q 256 (299)
T ss_pred cceecCHHHHHHHHHHHHHHhccCCCCCC-CCCCCccCcCCCCc-CCccCCEEEEECCCCEEEeCcccEEEEecCCC--C
Confidence 99999999999999999987653321111 12344699876533 26799999999658999999999988433333 5
Q ss_pred EEEEEEeCC---CceEeccceeeeeEEEEeCCCCC
Q 013377 412 YCLGVVKSD---NVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 412 ~Cl~~~~~~---~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
.|+++.... +.||||+.|||++|+|||.++++
T Consensus 257 ~C~~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~~ 291 (299)
T cd05472 257 VCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGR 291 (299)
T ss_pred EEEEEeCCCCCCCCEEEchHHccceEEEEECCCCE
Confidence 799877652 37999999999999999999864
No 15
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=2.8e-48 Score=393.13 Aligned_cols=299 Identities=19% Similarity=0.284 Sum_probs=233.5
Q ss_pred CCceeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCC
Q 013377 92 GNDTYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCN 169 (444)
Q Consensus 92 ~~~~~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~ 169 (444)
.+..+++ |+.+.+|+++|.||||+|+|.|++||||+++||+|. |.. ..| ..++.|||++|+|++..
T Consensus 126 ~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~---~~C------~~~~~yd~s~SsT~~~~--- 193 (453)
T PTZ00147 126 EFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTT---EGC------ETKNLYDSSKSKTYEKD--- 193 (453)
T ss_pred CCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCc---ccc------cCCCccCCccCcceEEC---
Confidence 3455677 788899999999999999999999999999999998 643 233 23489999999999985
Q ss_pred CccCCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccc--cCCCCCCceEEe
Q 013377 170 STLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGS--FLDGAAPNGLFG 247 (444)
Q Consensus 170 ~~~C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~--~~~~~~~dGIlG 247 (444)
.+.|++.| ++| .+.|.+++|+|+|++ ..++ ..|+|+.+..+. +......|||||
T Consensus 194 ---------------~~~f~i~Y-g~G-svsG~~~~DtVtiG~------~~v~-~qF~~~~~~~~f~~~~~~~~~DGILG 249 (453)
T PTZ00147 194 ---------------GTKVEMNY-VSG-TVSGFFSKDLVTIGN------LSVP-YKFIEVTDTNGFEPFYTESDFDGIFG 249 (453)
T ss_pred ---------------CCEEEEEe-CCC-CEEEEEEEEEEEECC------EEEE-EEEEEEEeccCcccccccccccceec
Confidence 78999999 565 589999999999985 3455 579998876542 223345699999
Q ss_pred eCCCCCC------hHHHHhhcCCC-CceeEEeeCC--CCCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCE
Q 013377 248 LGMDKTS------VPSILANQGLI-PNSFSMCFGS--DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGN 317 (444)
Q Consensus 248 Lg~~~~S------~~~ql~~~g~i-~~~FS~~L~~--~~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~ 317 (444)
||++.++ ++.+|.+|++| +++||+||++ ...|.|+||++|++ +.+.+.|++.....+|.|.++ +.+|+.
T Consensus 250 LG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~ 328 (453)
T PTZ00147 250 LGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNV 328 (453)
T ss_pred ccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCE
Confidence 9998764 56699999999 8999999987 35799999999987 566777777666678999998 578775
Q ss_pred EeeccCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcC
Q 013377 318 AVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVND 397 (444)
Q Consensus 318 ~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~ 397 (444)
.. ....+||||||+++++|+++++++.+++.+.. .... ..+...|+. ..+|+|+|+| +|..++|++
T Consensus 329 ~~-~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~----~~~~-~~y~~~C~~-------~~lP~~~f~f-~g~~~~L~p 394 (453)
T PTZ00147 329 SS-EKANVIVDSGTSVITVPTEFLNKFVESLDVFK----VPFL-PLYVTTCNN-------TKLPTLEFRS-PNKVYTLEP 394 (453)
T ss_pred ec-CceeEEECCCCchhcCCHHHHHHHHHHhCCee----cCCC-CeEEEeCCC-------CCCCeEEEEE-CCEEEEECH
Confidence 32 34679999999999999999999988875421 1111 112334543 4689999999 789999999
Q ss_pred CeEEEEeCC-CCeeEEEEE-EEeC---CCceEeccceeeeeEEEEeCCCCC
Q 013377 398 PIVIVSSEP-KGLYLYCLG-VVKS---DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 398 ~~~~~~~~~-~~~~~~Cl~-~~~~---~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
++|+....+ .. ..|+. +... .+.||||++|||++|+|||.++.+
T Consensus 395 ~~yi~~~~~~~~--~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~r 443 (453)
T PTZ00147 395 EYYLQPIEDIGS--ALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHT 443 (453)
T ss_pred HHheeccccCCC--cEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCE
Confidence 988875322 22 46975 4432 237999999999999999999864
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=3.4e-47 Score=380.23 Aligned_cols=302 Identities=18% Similarity=0.223 Sum_probs=223.4
Q ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCCCCCC
Q 013377 103 FLHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSA 182 (444)
Q Consensus 103 ~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~C~~~ 182 (444)
..|+++|.||||+|+|.|+|||||+++||+|. .|.. .++.|||++|+|++..
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~--~~~~----------~~~~f~~~~SsT~~~~---------------- 53 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAA--PHPF----------IHTYFHRELSSTYRDL---------------- 53 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcC--CCcc----------ccccCCchhCcCcccC----------------
Confidence 36999999999999999999999999999997 2311 2378999999999986
Q ss_pred CCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC--------C
Q 013377 183 GSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT--------S 254 (444)
Q Consensus 183 ~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~--------S 254 (444)
.|.|++.| ++| .+.|.+++|+|+|++.. .. ...+.|++.....+.+......|||||||++.+ +
T Consensus 54 --~~~~~i~Y-g~G-s~~G~~~~D~v~ig~~~---~~-~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~ 125 (364)
T cd05473 54 --GKGVTVPY-TQG-SWEGELGTDLVSIPKGP---NV-TFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEP 125 (364)
T ss_pred --CceEEEEE-Ccc-eEEEEEEEEEEEECCCC---cc-ceEEeeEEEeccccceecccccceeeeecccccccCCCCCCC
Confidence 78999999 565 57899999999998521 11 122345666655544433335699999999765 3
Q ss_pred hHHHHhhcCCCCceeEEeeCC-----------CCCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEeecc
Q 013377 255 VPSILANQGLIPNSFSMCFGS-----------DGTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE 322 (444)
Q Consensus 255 ~~~ql~~~g~i~~~FS~~L~~-----------~~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~ 322 (444)
+..+|.+|+.++++||+||.. ...|.|+||++|+. +.+.+.|++.....+|.|.+++|+||++.+..+
T Consensus 126 ~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~ 205 (364)
T cd05473 126 FFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLD 205 (364)
T ss_pred HHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccc
Confidence 556898888887899998742 13699999999987 444455555555678999999999999988653
Q ss_pred ------CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCC-CCCcccccccCCCCCCcCCCeEEEEEcCC-----
Q 013377 323 ------FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTS-DLPFEYCYVLSPNQTNFEYPVVNLTMKGG----- 390 (444)
Q Consensus 323 ------~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~C~~~~~~~~~~~~P~i~~~f~gg----- 390 (444)
..+||||||++++||+++|++|.+++.++.......... ......|+..... ....+|+|+|+|+++
T Consensus 206 ~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~~P~i~~~f~g~~~~~~ 284 (364)
T cd05473 206 CKEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTT-PWEIFPKISIYLRDENSSQS 284 (364)
T ss_pred cccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCc-hHhhCCcEEEEEccCCCCce
Confidence 269999999999999999999999998875422111100 0112358764321 113699999999542
Q ss_pred ccEEEcCCeEEEEeCC--CCeeEEEEEEE--eCCCceEeccceeeeeEEEEeCCCCC
Q 013377 391 GPFFVNDPIVIVSSEP--KGLYLYCLGVV--KSDNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 391 ~~~~l~~~~~~~~~~~--~~~~~~Cl~~~--~~~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
..++|++++|+..... .. ..|+++. ...+.||||+.|||++|+|||.++.+
T Consensus 285 ~~l~l~p~~Y~~~~~~~~~~--~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~r 339 (364)
T cd05473 285 FRITILPQLYLRPVEDHGTQ--LDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKR 339 (364)
T ss_pred EEEEECHHHhhhhhccCCCc--ceeeEEeeecCCCceEEeeeeEcceEEEEECCCCE
Confidence 3678888888765321 22 4697533 23347999999999999999999864
No 17
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=4e-47 Score=383.96 Aligned_cols=298 Identities=19% Similarity=0.273 Sum_probs=229.5
Q ss_pred Cceeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCC
Q 013377 93 NDTYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNS 170 (444)
Q Consensus 93 ~~~~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~ 170 (444)
+..+++ |+.+.+||++|.||||+|+|.|++||||+++||+|. |. ...| ..++.|||++|+|++..
T Consensus 126 ~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~---~~~C------~~~~~yd~s~SsT~~~~---- 192 (450)
T PTZ00013 126 NDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD---SIGC------SIKNLYDSSKSKSYEKD---- 192 (450)
T ss_pred CCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC---cccc------ccCCCccCccCcccccC----
Confidence 345666 778889999999999999999999999999999998 64 2223 23488999999999985
Q ss_pred ccCCCCCCCCCCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeecc--ccCCCCCCceEEee
Q 013377 171 TLCELQKQCPSAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTG--SFLDGAAPNGLFGL 248 (444)
Q Consensus 171 ~~C~~~~~C~~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g--~~~~~~~~dGIlGL 248 (444)
.|.+.+.| ++| .+.|.+++|+|+|++ +.++ ..|+++.+..+ ..+.....||||||
T Consensus 193 --------------~~~~~i~Y-G~G-sv~G~~~~Dtv~iG~------~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGL 249 (450)
T PTZ00013 193 --------------GTKVDITY-GSG-TVKGFFSKDLVTLGH------LSMP-YKFIEVTDTDDLEPIYSSSEFDGILGL 249 (450)
T ss_pred --------------CcEEEEEE-CCc-eEEEEEEEEEEEECC------EEEc-cEEEEEEeccccccceecccccceecc
Confidence 78999999 555 489999999999985 3444 57888876542 12233356999999
Q ss_pred CCCCCC------hHHHHhhcCCC-CceeEEeeCCC--CCeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEE
Q 013377 249 GMDKTS------VPSILANQGLI-PNSFSMCFGSD--GTGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNA 318 (444)
Q Consensus 249 g~~~~S------~~~ql~~~g~i-~~~FS~~L~~~--~~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~ 318 (444)
|++.++ ++.+|++||+| +++||+||.++ ..|.|+|||+|++ +.+.+.|++.....+|.|.++ +.+|...
T Consensus 250 g~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~ 328 (450)
T PTZ00013 250 GWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQT 328 (450)
T ss_pred cCCccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECcee
Confidence 998654 56799999999 89999999863 4799999999987 566777777666779999998 7776543
Q ss_pred eeccCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCC
Q 013377 319 VNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDP 398 (444)
Q Consensus 319 ~~~~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~ 398 (444)
. .+..+||||||+++++|+++++++.+++.... .... ..+...|+. ..+|+|+|+| +|..++|+++
T Consensus 329 ~-~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~----~~~~-~~y~~~C~~-------~~lP~i~F~~-~g~~~~L~p~ 394 (450)
T PTZ00013 329 M-QKANVIVDSGTTTITAPSEFLNKFFANLNVIK----VPFL-PFYVTTCDN-------KEMPTLEFKS-ANNTYTLEPE 394 (450)
T ss_pred c-cccceEECCCCccccCCHHHHHHHHHHhCCee----cCCC-CeEEeecCC-------CCCCeEEEEE-CCEEEEECHH
Confidence 3 45679999999999999999888888774321 1011 112334532 4689999999 8899999998
Q ss_pred eEEEEeC-CCCeeEEEEEEE-eC---CCceEeccceeeeeEEEEeCCCCC
Q 013377 399 IVIVSSE-PKGLYLYCLGVV-KS---DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 399 ~~~~~~~-~~~~~~~Cl~~~-~~---~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
+|+.... .+. ..|+..+ +. .+.||||++|||++|+|||.++.+
T Consensus 395 ~Yi~~~~~~~~--~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~r 442 (450)
T PTZ00013 395 YYMNPLLDVDD--TLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKES 442 (450)
T ss_pred HheehhccCCC--CeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCE
Confidence 8876421 122 4697544 32 237999999999999999999864
No 18
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=9.4e-47 Score=362.43 Aligned_cols=250 Identities=34% Similarity=0.632 Sum_probs=204.7
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeEecC--CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCCCCC
Q 013377 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCD--CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPS 181 (444)
Q Consensus 104 ~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~--C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~C~~ 181 (444)
+|+++|.||||||++.|++||||+++||+|. |..|
T Consensus 2 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------- 38 (273)
T cd05475 2 YYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------- 38 (273)
T ss_pred ceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------------------------------
Confidence 5999999999999999999999999999984 3222
Q ss_pred CCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccC-CCCCCceEEeeCCCCCChHHHHh
Q 013377 182 AGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFL-DGAAPNGLFGLGMDKTSVPSILA 260 (444)
Q Consensus 182 ~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~-~~~~~dGIlGLg~~~~S~~~ql~ 260 (444)
.|.|++.| +|++.+.|.+++|+|+|+..++ ...++++.|||+..+.+.+. .....|||||||+++.|+++||.
T Consensus 39 ---~c~~~i~Y-gd~~~~~G~~~~D~v~~~~~~~--~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~ 112 (273)
T cd05475 39 ---QCDYEIEY-ADGGSSMGVLVTDIFSLKLTNG--SRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLA 112 (273)
T ss_pred ---cCccEeEe-CCCCceEEEEEEEEEEEeecCC--CcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHH
Confidence 47899999 6788999999999999975432 24568999999987765432 33456999999999999999999
Q ss_pred hcCCCCceeEEeeCCCCCeeEEeCCCCCC--CCcccccccCCCCCeeEEEEEEEEECCEEeec-cCcEEEeccccccccC
Q 013377 261 NQGLIPNSFSMCFGSDGTGRISFGDKGSP--GQGETPFSLRQTHPTYNITITQVSVGGNAVNF-EFSAIFDSGTSFTYLN 337 (444)
Q Consensus 261 ~~g~i~~~FS~~L~~~~~G~l~fG~~d~~--~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~-~~~~iiDSGTs~~~lp 337 (444)
++++|+++||+||+++..|.|+||+.... ...++|+...+...+|.|++.+|+||++.+.. ...+||||||++++||
T Consensus 113 ~~~~i~~~Fs~~l~~~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp 192 (273)
T cd05475 113 SQGIIKNVIGHCLSSNGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFN 192 (273)
T ss_pred hcCCcCceEEEEccCCCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcC
Confidence 99988999999999877799999964322 35566665544346899999999999986543 3579999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCC---ccEEEcCCeEEEEeCCCCeeEEEE
Q 013377 338 DPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGG---GPFFVNDPIVIVSSEPKGLYLYCL 414 (444)
Q Consensus 338 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg---~~~~l~~~~~~~~~~~~~~~~~Cl 414 (444)
+++| +|+|+|+|+++ ++++|++++|++....+ ..|+
T Consensus 193 ~~~y--------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~---~~Cl 231 (273)
T cd05475 193 AQAY--------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKG---NVCL 231 (273)
T ss_pred Cccc--------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCC---CEEE
Confidence 9765 58999999443 79999999998865433 4699
Q ss_pred EEEeCC-----CceEeccceeeeeEEEEeCCCCC
Q 013377 415 GVVKSD-----NVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 415 ~~~~~~-----~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
+++... +.||||+.|||++|+|||.++.+
T Consensus 232 ~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~r 265 (273)
T cd05475 232 GILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQ 265 (273)
T ss_pred EEecCCCcCCCceEEECceEEEeeEEEEECcCCE
Confidence 988543 37999999999999999999864
No 19
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=2.5e-46 Score=360.62 Aligned_cols=259 Identities=21% Similarity=0.316 Sum_probs=211.2
Q ss_pred EEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCCCCCCC
Q 013377 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAG 183 (444)
Q Consensus 105 y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~C~~~~ 183 (444)
|+++|.||||+|++.|++||||+++||+|. |..|... .++.|||++|+|++..
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~---------~~~~y~~~~Sst~~~~----------------- 54 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQG---------GHKLYDPSKSSTAKLL----------------- 54 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhc---------cCCcCCCccCccceec-----------------
Confidence 789999999999999999999999999999 8777532 3378999999999875
Q ss_pred CCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC---------C
Q 013377 184 SNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT---------S 254 (444)
Q Consensus 184 ~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~---------S 254 (444)
..|.|.+.| ++|+.+.|.+++|+|+|++ ..++++.|||++...+.++.....|||||||+... +
T Consensus 55 ~~~~~~i~Y-~~G~~~~G~~~~D~v~ig~------~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~ 127 (278)
T cd06097 55 PGATWSISY-GDGSSASGIVYTDTVSIGG------VEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKT 127 (278)
T ss_pred CCcEEEEEe-CCCCeEEEEEEEEEEEECC------EEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCC
Confidence 368999999 6777899999999999984 46789999999987664445456799999999765 3
Q ss_pred hHHHHhhcCCCCceeEEeeCCCCCeeEEeCCCCCC-CCcccccccCCC-CCeeEEEEEEEEECCEEee--ccCcEEEecc
Q 013377 255 VPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSP-GQGETPFSLRQT-HPTYNITITQVSVGGNAVN--FEFSAIFDSG 330 (444)
Q Consensus 255 ~~~ql~~~g~i~~~FS~~L~~~~~G~l~fG~~d~~-~~~~~~~~~~~~-~~~y~v~l~~i~vg~~~~~--~~~~~iiDSG 330 (444)
+..+|.+++. ++.||+||.++..|+|+||++|+. +.+.+.|++... ..+|.|++++|+||++... .+..+|||||
T Consensus 128 ~~~~l~~~~~-~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSG 206 (278)
T cd06097 128 FFENALSSLD-APLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWSRSGFSAIADTG 206 (278)
T ss_pred HHHHHHHhcc-CceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceeecCCceEEeecC
Confidence 5667888765 899999999767899999999987 566666666544 5789999999999998432 4467999999
Q ss_pred ccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEeCCCCee
Q 013377 331 TSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLY 410 (444)
Q Consensus 331 Ts~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~~ 410 (444)
|+++++|++++++|.+++.... . + ....+|.++|+. .+|+|+|+|
T Consensus 207 Ts~~~lP~~~~~~l~~~l~g~~----~--~---~~~~~~~~~C~~---~~P~i~f~~----------------------- 251 (278)
T cd06097 207 TTLILLPDAIVEAYYSQVPGAY----Y--D---SEYGGWVFPCDT---TLPDLSFAV----------------------- 251 (278)
T ss_pred CchhcCCHHHHHHHHHhCcCCc----c--c---CCCCEEEEECCC---CCCCEEEEE-----------------------
Confidence 9999999999988888773211 1 0 011356667753 389999999
Q ss_pred EEEEEEEeCCCceEeccceeeeeEEEEeCCCCC
Q 013377 411 LYCLGVVKSDNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 411 ~~Cl~~~~~~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
.||||++|||++|+|||.++.+
T Consensus 252 -----------~~ilGd~fl~~~y~vfD~~~~~ 273 (278)
T cd06097 252 -----------FSILGDVFLKAQYVVFDVGGPK 273 (278)
T ss_pred -----------EEEEcchhhCceeEEEcCCCce
Confidence 5999999999999999999864
No 20
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=6.5e-44 Score=341.42 Aligned_cols=236 Identities=30% Similarity=0.547 Sum_probs=200.0
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCCCCCCC
Q 013377 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAG 183 (444)
Q Consensus 104 ~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~C~~~~ 183 (444)
+|+++|.||||+|++.|++||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 499999999999999999999999999975
Q ss_pred CCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCChHHHHhhcC
Q 013377 184 SNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQG 263 (444)
Q Consensus 184 ~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S~~~ql~~~g 263 (444)
|.|.+.| +|++.+.|.+++|+|+|++.. ..++++.|||++...+ + .....+||||||+...|+++||..++
T Consensus 31 --~~~~~~Y-~dg~~~~G~~~~D~v~~g~~~----~~~~~~~Fg~~~~~~~-~-~~~~~~GIlGLg~~~~s~~~ql~~~~ 101 (265)
T cd05476 31 --CSYEYSY-GDGSSTSGVLATETFTFGDSS----VSVPNVAFGCGTDNEG-G-SFGGADGILGLGRGPLSLVSQLGSTG 101 (265)
T ss_pred --CceEeEe-CCCceeeeeEEEEEEEecCCC----CccCCEEEEecccccC-C-ccCCCCEEEECCCCcccHHHHhhccc
Confidence 4578899 678899999999999998531 2578999999999876 2 33456999999999999999999876
Q ss_pred CCCceeEEeeCC----CCCeeEEeCCCCCC---CCcccccccCC-CCCeeEEEEEEEEECCEEeec-----------cCc
Q 013377 264 LIPNSFSMCFGS----DGTGRISFGDKGSP---GQGETPFSLRQ-THPTYNITITQVSVGGNAVNF-----------EFS 324 (444)
Q Consensus 264 ~i~~~FS~~L~~----~~~G~l~fG~~d~~---~~~~~~~~~~~-~~~~y~v~l~~i~vg~~~~~~-----------~~~ 324 (444)
++||+||.+ +..|+|+||++|+. ...++|++..+ ...+|.|++++|+|+++.+.+ ...
T Consensus 102 ---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ 178 (265)
T cd05476 102 ---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGG 178 (265)
T ss_pred ---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCc
Confidence 899999986 34799999999984 56677776543 246899999999999998752 356
Q ss_pred EEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEe
Q 013377 325 AIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSS 404 (444)
Q Consensus 325 ~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~ 404 (444)
+||||||++++||+++| |+|+|+|.+|.++.+++++|++..
T Consensus 179 ai~DTGTs~~~lp~~~~---------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~ 219 (265)
T cd05476 179 TIIDSGTTLTYLPDPAY---------------------------------------PDLTLHFDGGADLELPPENYFVDV 219 (265)
T ss_pred EEEeCCCcceEcCcccc---------------------------------------CCEEEEECCCCEEEeCcccEEEEC
Confidence 99999999999998765 789999955899999999998864
Q ss_pred CCCCeeEEEEEEEeC--CCceEeccceeeeeEEEEeCCCCC
Q 013377 405 EPKGLYLYCLGVVKS--DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 405 ~~~~~~~~Cl~~~~~--~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
..+ ..|++++.. .+.||||++|||++|+|||.++++
T Consensus 220 ~~~---~~C~~~~~~~~~~~~ilG~~fl~~~~~vFD~~~~~ 257 (265)
T cd05476 220 GEG---VVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSR 257 (265)
T ss_pred CCC---CEEEEEecCCCCCcEEEChhhcccEEEEEECCCCE
Confidence 433 579998876 348999999999999999999874
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=3.2e-43 Score=341.93 Aligned_cols=257 Identities=24% Similarity=0.418 Sum_probs=208.4
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCCCCCCC
Q 013377 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAG 183 (444)
Q Consensus 104 ~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~C~~~~ 183 (444)
.|+++|.||||+|++.|++||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 58999999999999999999999999995
Q ss_pred CCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCC----------
Q 013377 184 SNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT---------- 253 (444)
Q Consensus 184 ~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~---------- 253 (444)
.|++.| ++++.+.|.+++|+|+|++ ..++++.|||++... ..+||||||+.+.
T Consensus 31 ---~~~~~Y-~~g~~~~G~~~~D~v~~g~------~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~ 93 (295)
T cd05474 31 ---DFSISY-GDGTSASGTWGTDTVSIGG------ATVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTY 93 (295)
T ss_pred ---eeEEEe-ccCCcEEEEEEEEEEEECC------eEecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcC
Confidence 257889 6778999999999999985 357899999999732 3489999999886
Q ss_pred -ChHHHHhhcCCC-CceeEEeeCC--CCCeeEEeCCCCCC-C---CcccccccCCC---CCeeEEEEEEEEECCEEee--
Q 013377 254 -SVPSILANQGLI-PNSFSMCFGS--DGTGRISFGDKGSP-G---QGETPFSLRQT---HPTYNITITQVSVGGNAVN-- 320 (444)
Q Consensus 254 -S~~~ql~~~g~i-~~~FS~~L~~--~~~G~l~fG~~d~~-~---~~~~~~~~~~~---~~~y~v~l~~i~vg~~~~~-- 320 (444)
+++.||.++|+| ++.||+||.+ ...|.|+||++|.. + ..++|++.... ..+|.|.+++|+++++.+.
T Consensus 94 ~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~ 173 (295)
T cd05474 94 PNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTT 173 (295)
T ss_pred CCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCccc
Confidence 689999999999 8999999998 35799999999976 3 44555554432 1679999999999998753
Q ss_pred ---ccCcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcC
Q 013377 321 ---FEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVND 397 (444)
Q Consensus 321 ---~~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~ 397 (444)
.+..+||||||++++||.++|++|.+++.+..... ...+...|+.. .. |+|+|+| +|.+++|++
T Consensus 174 ~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~-----~~~~~~~C~~~------~~-p~i~f~f-~g~~~~i~~ 240 (295)
T cd05474 174 LLSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDSD-----EGLYVVDCDAK------DD-GSLTFNF-GGATISVPL 240 (295)
T ss_pred ccCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcCC-----CcEEEEeCCCC------CC-CEEEEEE-CCeEEEEEH
Confidence 33679999999999999999999999997654321 12233445443 33 9999999 789999999
Q ss_pred CeEEEEeCC---CCeeEEEE-EEEeCC-CceEeccceeeeeEEEEeCCCCC
Q 013377 398 PIVIVSSEP---KGLYLYCL-GVVKSD-NVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 398 ~~~~~~~~~---~~~~~~Cl-~~~~~~-~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
++|++.... .. .+|+ ++.... +.||||++|||++|+|||.++.+
T Consensus 241 ~~~~~~~~~~~~~~--~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ 289 (295)
T cd05474 241 SDLVLPASTDDGGD--GACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNE 289 (295)
T ss_pred HHhEeccccCCCCC--CCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCE
Confidence 988886532 22 5695 555544 58999999999999999999875
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=6.5e-44 Score=350.01 Aligned_cols=291 Identities=26% Similarity=0.444 Sum_probs=234.0
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCCCCCC
Q 013377 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSA 182 (444)
Q Consensus 104 ~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~C~~~ 182 (444)
+|+++|.||||+|++.|++||||+++||++. |..|. .| ..+..|+|++|+|++..
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~--~~------~~~~~y~~~~S~t~~~~---------------- 56 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCS--SC------ASSGFYNPSKSSTFSNQ---------------- 56 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHT--HH------CTSC-BBGGGSTTEEEE----------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceecccccc--cc------ccccccccccccccccc----------------
Confidence 4999999999999999999999999999998 76661 11 12389999999999986
Q ss_pred CCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCC-------CCh
Q 013377 183 GSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK-------TSV 255 (444)
Q Consensus 183 ~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~-------~S~ 255 (444)
.+.+.+.| +++. ++|.+++|+|+|++ +.+.++.||++....+..+.....+||||||+.. .++
T Consensus 57 --~~~~~~~y-~~g~-~~G~~~~D~v~ig~------~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~ 126 (317)
T PF00026_consen 57 --GKPFSISY-GDGS-VSGNLVSDTVSIGG------LTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTF 126 (317)
T ss_dssp --EEEEEEEE-TTEE-EEEEEEEEEEEETT------EEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SH
T ss_pred --eeeeeeec-cCcc-cccccccceEeeee------ccccccceeccccccccccccccccccccccCCcccccccCCcc
Confidence 68899999 5655 99999999999984 5678899999999755433334569999999743 578
Q ss_pred HHHHhhcCCC-CceeEEeeCCCC--CeeEEeCCCCCC-CCcccccccCCCCCeeEEEEEEEEECCEEee--ccCcEEEec
Q 013377 256 PSILANQGLI-PNSFSMCFGSDG--TGRISFGDKGSP-GQGETPFSLRQTHPTYNITITQVSVGGNAVN--FEFSAIFDS 329 (444)
Q Consensus 256 ~~ql~~~g~i-~~~FS~~L~~~~--~G~l~fG~~d~~-~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~--~~~~~iiDS 329 (444)
+.+|.++|+| +++||++|.+.. .|.|+||++|++ +.+.+.|++.....+|.|.+++|.++++... .+..++|||
T Consensus 127 ~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~~~~~~~~~~~Dt 206 (317)
T PF00026_consen 127 LDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESVFSSSGQQAILDT 206 (317)
T ss_dssp HHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEEEEEEEEEEEEET
T ss_pred eecchhhccccccccceeeeecccccchheeeccccccccCceeccCcccccccccccccccccccccccccceeeeccc
Confidence 8999999999 999999999843 799999999988 5566677776677889999999999999332 236799999
Q ss_pred cccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEeCCCCe
Q 013377 330 GTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGL 409 (444)
Q Consensus 330 GTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~ 409 (444)
||++++||.+++++|++++...... .++.++|+.. ..+|.|+|+| ++.+++|++++|+.......
T Consensus 207 gt~~i~lp~~~~~~i~~~l~~~~~~------------~~~~~~c~~~-~~~p~l~f~~-~~~~~~i~~~~~~~~~~~~~- 271 (317)
T PF00026_consen 207 GTSYIYLPRSIFDAIIKALGGSYSD------------GVYSVPCNST-DSLPDLTFTF-GGVTFTIPPSDYIFKIEDGN- 271 (317)
T ss_dssp TBSSEEEEHHHHHHHHHHHTTEEEC------------SEEEEETTGG-GGSEEEEEEE-TTEEEEEEHHHHEEEESSTT-
T ss_pred ccccccccchhhHHHHhhhcccccc------------eeEEEecccc-cccceEEEee-CCEEEEecchHhcccccccc-
Confidence 9999999999999999998765432 2344444332 5789999999 88999999998888765431
Q ss_pred eEEEEEEEeC------CCceEeccceeeeeEEEEeCCCCC
Q 013377 410 YLYCLGVVKS------DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 410 ~~~Cl~~~~~------~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
...|+..+.. .+.+|||.+|||++|+|||.|+++
T Consensus 272 ~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ 311 (317)
T PF00026_consen 272 GGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNR 311 (317)
T ss_dssp SSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTE
T ss_pred cceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCE
Confidence 1379764443 238999999999999999999875
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2e-41 Score=326.83 Aligned_cols=260 Identities=27% Similarity=0.469 Sum_probs=209.0
Q ss_pred EEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCCCCCCC
Q 013377 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSAG 183 (444)
Q Consensus 105 y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~C~~~~ 183 (444)
|+++|.||||+|++.|++||||+++||+|. |..|....+ ....|++..|+++..
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~-------~~~~~~~~~s~~~~~------------------ 55 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKH-------PRFKYDSSKSSTYKD------------------ 55 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccC-------CCCccCccCCceeec------------------
Confidence 789999999999999999999999999999 877754432 111378888887776
Q ss_pred CCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCC------CChHH
Q 013377 184 SNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK------TSVPS 257 (444)
Q Consensus 184 ~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~------~S~~~ 257 (444)
..|.|.+.| ++ +.+.|.+++|+|+|++. .++++.|||++...+.+ .....+||||||+.. .+++.
T Consensus 56 ~~~~~~~~Y-~~-g~~~g~~~~D~v~~~~~------~~~~~~fg~~~~~~~~~-~~~~~~GilGLg~~~~~~~~~~s~~~ 126 (283)
T cd05471 56 TGCTFSITY-GD-GSVTGGLGTDTVTIGGL------TIPNQTFGCATSESGDF-SSSGFDGILGLGFPSLSVDGVPSFFD 126 (283)
T ss_pred CCCEEEEEE-CC-CeEEEEEEEeEEEECCE------EEeceEEEEEeccCCcc-cccccceEeecCCcccccccCCCHHH
Confidence 379999999 45 57899999999999853 47899999999887532 233568999999998 78999
Q ss_pred HHhhcCCC-CceeEEeeCCC----CCeeEEeCCCCCC-CCcccccccCCC--CCeeEEEEEEEEECCEE--e-eccCcEE
Q 013377 258 ILANQGLI-PNSFSMCFGSD----GTGRISFGDKGSP-GQGETPFSLRQT--HPTYNITITQVSVGGNA--V-NFEFSAI 326 (444)
Q Consensus 258 ql~~~g~i-~~~FS~~L~~~----~~G~l~fG~~d~~-~~~~~~~~~~~~--~~~y~v~l~~i~vg~~~--~-~~~~~~i 326 (444)
||.+++.| +++||+||.+. ..|.|+||++|+. ..+.+.|++... ..+|.|.+++|.|+++. . .....++
T Consensus 127 ~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~i 206 (283)
T cd05471 127 QLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAI 206 (283)
T ss_pred HHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEE
Confidence 99999998 99999999973 6899999999986 333344444333 56899999999999973 2 2346899
Q ss_pred EeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEEEeCC
Q 013377 327 FDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEP 406 (444)
Q Consensus 327 iDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~ 406 (444)
|||||++++||+++|++|.+++.+.... ...|+...|.. ...+|+|+|+|
T Consensus 207 iDsGt~~~~lp~~~~~~l~~~~~~~~~~----------~~~~~~~~~~~-~~~~p~i~f~f------------------- 256 (283)
T cd05471 207 VDSGTSLIYLPSSVYDAILKALGAAVSS----------SDGGYGVDCSP-CDTLPDITFTF------------------- 256 (283)
T ss_pred EecCCCCEeCCHHHHHHHHHHhCCcccc----------cCCcEEEeCcc-cCcCCCEEEEE-------------------
Confidence 9999999999999999999999877543 11233333322 26899999999
Q ss_pred CCeeEEEEEEEeCCCceEeccceeeeeEEEEeCCCCC
Q 013377 407 KGLYLYCLGVVKSDNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 407 ~~~~~~Cl~~~~~~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
.+|||++|||++|+|||.++.+
T Consensus 257 ---------------~~ilG~~fl~~~y~vfD~~~~~ 278 (283)
T cd05471 257 ---------------LWILGDVFLRNYYTVFDLDNNR 278 (283)
T ss_pred ---------------EEEccHhhhhheEEEEeCCCCE
Confidence 5899999999999999999853
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.98 E-value=9.8e-32 Score=237.81 Aligned_cols=157 Identities=38% Similarity=0.757 Sum_probs=129.0
Q ss_pred EEEEEEecCCCeEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCC----CCC
Q 013377 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCDCVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQK----QCP 180 (444)
Q Consensus 105 y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~----~C~ 180 (444)
|+++|.||||+|++.|+|||||+++|++|. . +.|+|++|+||+.++|+++.|...+ .|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~-----------~------~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~ 63 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP-----------D------PPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCC 63 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET---------------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCT
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC-----------C------cccCCccCCcccccCCCCcchhhcccccccCC
Confidence 899999999999999999999999999982 1 8999999999999999999998653 455
Q ss_pred CCCCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCCCCCChHHHHh
Q 013377 181 SAGSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILA 260 (444)
Q Consensus 181 ~~~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~~~~S~~~ql~ 260 (444)
..+..|.|.+.| .|++.+.|.+++|+|+++...+. ...+.++.|||++...|.+. ..+||||||++++|+++||+
T Consensus 64 ~~~~~C~y~~~y-~~~s~~~G~l~~D~~~~~~~~~~-~~~~~~~~FGC~~~~~g~~~---~~~GilGLg~~~~Sl~sQl~ 138 (164)
T PF14543_consen 64 CSNNSCPYSQSY-GDGSSSSGFLASDTLTFGSSSGG-SNSVPDFIFGCATSNSGLFY---GADGILGLGRGPLSLPSQLA 138 (164)
T ss_dssp CESSEEEEEEEE-TTTEEEEEEEEEEEEEEEEESSS-SEEEEEEEEEEE-GGGTSST---TEEEEEE-SSSTTSHHHHHH
T ss_pred CCcCcccceeec-CCCccccCceEEEEEEecCCCCC-CceeeeEEEEeeeccccCCc---CCCcccccCCCcccHHHHHH
Confidence 667789999999 78999999999999999875432 25678999999999987654 45899999999999999998
Q ss_pred hcCCCCceeEEeeCC---CCCeeEEeCC
Q 013377 261 NQGLIPNSFSMCFGS---DGTGRISFGD 285 (444)
Q Consensus 261 ~~g~i~~~FS~~L~~---~~~G~l~fG~ 285 (444)
++ ..++|||||.+ +..|.|+||+
T Consensus 139 ~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 139 SS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp HH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred Hh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 88 58999999998 5689999995
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=1.7e-22 Score=166.65 Aligned_cols=107 Identities=31% Similarity=0.558 Sum_probs=89.7
Q ss_pred EEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCC-CCCCCCCcccccCCCccCCCCCCCCCCCC
Q 013377 107 TNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIY-SPNTSSTSSKVPCNSTLCELQKQCPSAGS 184 (444)
Q Consensus 107 ~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~y-dps~SsT~~~~~C~~~~C~~~~~C~~~~~ 184 (444)
++|.||||+|++.|+|||||+++||+|. |..|..+.+ +.| +|++|++++..
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~---------~~~~~~~~sst~~~~------------------ 53 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSH---------SSYDDPSASSTYSDN------------------ 53 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccc---------cccCCcCCCCCCCCC------------------
Confidence 4799999999999999999999999999 776654322 455 99999999884
Q ss_pred CccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEee
Q 013377 185 NCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGL 248 (444)
Q Consensus 185 ~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGL 248 (444)
.|.|.+.| +++ .+.|.+++|+|+|++ ..++++.|||++...+.++.....+|||||
T Consensus 54 ~~~~~~~Y-~~g-~~~g~~~~D~v~ig~------~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 54 GCTFSITY-GTG-SLSGGLSTDTVSIGD------IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CcEEEEEe-CCC-eEEEEEEEEEEEECC------EEECCEEEEEEEecCCccccccccccccCC
Confidence 78999999 565 578999999999984 457899999999998765554567999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.88 E-value=1.1e-22 Score=179.62 Aligned_cols=137 Identities=27% Similarity=0.500 Sum_probs=106.6
Q ss_pred eeEEEEEEEEECCEEeeccC----------cEEEeccccccccCHHHHHHHHHHHHHhhhccccC--CCCCCCccccccc
Q 013377 304 TYNITITQVSVGGNAVNFEF----------SAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRET--STSDLPFEYCYVL 371 (444)
Q Consensus 304 ~y~v~l~~i~vg~~~~~~~~----------~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~--~~~~~~~~~C~~~ 371 (444)
+|+|+|++|+||++++.++. .+||||||++|+||+++|++|+++|.+++...... ......++.||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 59999999999999998653 48999999999999999999999999999876421 2334577899999
Q ss_pred CC---CCCCcCCCeEEEEEcCCccEEEcCCeEEEEeCCCCeeEEEEEEEeC----CCceEeccceeeeeEEEEeCCCCC
Q 013377 372 SP---NQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKS----DNVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 372 ~~---~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~~~~Cl~~~~~----~~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
+. +.....+|+|+|||++|++++|++++|++...+ + .+|+++... .+..|||+.+|++++++||.++.+
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~-~--~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ 156 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSP-G--VFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGR 156 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECT-T--EEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccC-C--CEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCE
Confidence 76 244578999999998899999999998888764 3 789999987 349999999999999999999864
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.69 E-value=0.00019 Score=56.79 Aligned_cols=92 Identities=13% Similarity=0.120 Sum_probs=60.5
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCCCCCCCCCCCcccCCCCCCCCCCCcccccCCCccCCCCCCCCCC
Q 013377 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCVHGLNSSSGQVIDFNIYSPNTSSTSSKVPCNSTLCELQKQCPSA 182 (444)
Q Consensus 104 ~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~ydps~SsT~~~~~C~~~~C~~~~~C~~~ 182 (444)
.|++++.|+ .+++.+++|||++.+|+... ...+. . ...
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~--------------~-------~~~------------------ 40 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLG--------------L-------PLT------------------ 40 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC--------------C-------Ccc------------------
Confidence 488999999 79999999999999999875 11111 0 000
Q ss_pred CCCccceEEECCCCceEEeEEEEEEEEecCCCCCcccccceeEEEeeeeeccccCCCCCCceEEeeCC
Q 013377 183 GSNCPYQVRYLSDGTMSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGM 250 (444)
Q Consensus 183 ~~~~~~~~~Y~~d~~~~~G~l~~D~v~i~~~~~~~~~~~~~~~fg~~~~~~g~~~~~~~~dGIlGLg~ 250 (444)
......+.. .+|.........+.++|++ ..+.++.+........ ..|||||+..
T Consensus 41 -~~~~~~~~~-~~G~~~~~~~~~~~i~ig~------~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 41 -LGGKVTVQT-ANGRVRAARVRLDSLQIGG------ITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred -CCCcEEEEe-cCCCccceEEEcceEEECC------cEEeccEEEEeCCccc------CCceEeChHH
Confidence 123445555 4555556666688899984 3456666666554321 3589999853
No 28
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.20 E-value=0.19 Score=38.71 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=21.3
Q ss_pred EEEEecCCCeEEEEEEeCCCCceeEecC
Q 013377 107 TNVSVGQPALSFIVALDTGSDLFWLPCD 134 (444)
Q Consensus 107 ~~v~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (444)
+++.|+ .+++.+++|||++.+.+...
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~ 26 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRS 26 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHH
Confidence 356677 78999999999998888764
No 29
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=94.94 E-value=0.31 Score=40.59 Aligned_cols=32 Identities=19% Similarity=0.079 Sum_probs=27.5
Q ss_pred CCceEEEEEEecCCCeEEEEEEeCCCCceeEecC
Q 013377 101 LGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (444)
Q Consensus 101 ~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (444)
.++.|++++.|. .+++.+++|||++.+-+...
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~ 39 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEE 39 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHH
Confidence 346789999997 78999999999999988764
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.85 E-value=0.72 Score=38.48 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=26.3
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeEecC
Q 013377 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (444)
Q Consensus 104 ~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (444)
.+++++.|+ .+++.+++|||++.+++...
T Consensus 16 ~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 16 MLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred EEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 578999998 88999999999999999875
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=92.02 E-value=0.19 Score=39.37 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=25.5
Q ss_pred EEEEEEecCCCeEEEEEEeCCCCceeEecC
Q 013377 105 HYTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (444)
Q Consensus 105 y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (444)
||+++.|+ .+++.+++||||+.+++...
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 57889999 89999999999999999875
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=88.14 E-value=0.81 Score=38.16 Aligned_cols=21 Identities=10% Similarity=-0.072 Sum_probs=19.0
Q ss_pred ceEeccceeeeeEEEEeCCCC
Q 013377 422 VNIIGREYPIANNISLFHNCY 442 (444)
Q Consensus 422 ~~IlG~~fl~~~yvvfD~~~~ 442 (444)
..|||..||+.+-.+.|.++.
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~ 120 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKEN 120 (124)
T ss_pred CEEecHHHHHhCCeEEECCCC
Confidence 679999999999999998875
No 33
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=87.39 E-value=7.2 Score=38.49 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=20.0
Q ss_pred EEEEe-cCCC-eEE-EEEEeCCCCceeEecC
Q 013377 107 TNVSV-GQPA-LSF-IVALDTGSDLFWLPCD 134 (444)
Q Consensus 107 ~~v~i-GtP~-q~~-~v~vDTGS~~~Wv~~~ 134 (444)
++|.+ ||-. |.+ +|+|||||.=+=+...
T Consensus 28 VtVC~PGts~CqTIdnvlVDTGS~GLRi~~s 58 (370)
T PF11925_consen 28 VTVCAPGTSNCQTIDNVLVDTGSYGLRIFAS 58 (370)
T ss_pred EEEeCCCCCCceeeCcEEEeccchhhhHHHh
Confidence 55555 6632 666 8999999998777654
No 34
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=86.88 E-value=1.3 Score=32.96 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=27.9
Q ss_pred CceEEEEEEecCCCeEEEEEEeCCCCceeEecC
Q 013377 102 GFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (444)
Q Consensus 102 ~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (444)
...+++++.|| .+.+.+++|||++...++..
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISES 36 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCHH
Confidence 35688999999 79999999999999999876
No 35
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=84.34 E-value=4.8 Score=32.59 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=20.1
Q ss_pred CceEeccceeeeeEEEEeCCCCC
Q 013377 421 NVNIIGREYPIANNISLFHNCYS 443 (444)
Q Consensus 421 ~~~IlG~~fl~~~yvvfD~~~~~ 443 (444)
+..+||..||+.+-++.|+.+..
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~ 106 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQG 106 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCc
Confidence 47899999999999999988754
No 36
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=82.14 E-value=2.2 Score=33.76 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.2
Q ss_pred EEEEEecCCCeEEEEEEeCCCCceeEecC
Q 013377 106 YTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (444)
Q Consensus 106 ~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (444)
+.+|.|. .+++.+++||||+.+-++..
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccc
Confidence 3677787 78999999999999998875
No 37
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=81.17 E-value=7.3 Score=30.34 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=44.3
Q ss_pred CcEEEeccccccccCHHHHHHHHHHHHHhhhccccCCCCCCCcccccccCCCCCCcCCCeEEEEEcCCccEEEcCCeEEE
Q 013377 323 FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIV 402 (444)
Q Consensus 323 ~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~ 402 (444)
...+||||.....+|.+..+. . .+-.+++++=++|..+..-+.....
T Consensus 10 ~~fLVDTGA~vSviP~~~~~~---------------------------~------~~~~~~~l~AANgt~I~tyG~~~l~ 56 (89)
T cd06094 10 LRFLVDTGAAVSVLPASSTKK---------------------------S------LKPSPLTLQAANGTPIATYGTRSLT 56 (89)
T ss_pred cEEEEeCCCceEeeccccccc---------------------------c------ccCCceEEEeCCCCeEeeeeeEEEE
Confidence 357999999999999742110 0 1123556666677776655443222
Q ss_pred EeCCCCeeEEEEEEEeCCCceEeccceeeee
Q 013377 403 SSEPKGLYLYCLGVVKSDNVNIIGREYPIAN 433 (444)
Q Consensus 403 ~~~~~~~~~~Cl~~~~~~~~~IlG~~fl~~~ 433 (444)
-+-+..+...+...+..-+..|||.-||++|
T Consensus 57 ldlGlrr~~~w~FvvAdv~~pIlGaDfL~~~ 87 (89)
T cd06094 57 LDLGLRRPFAWNFVVADVPHPILGADFLQHY 87 (89)
T ss_pred EEcCCCcEEeEEEEEcCCCcceecHHHHHHc
Confidence 2222211122333333335789999999876
No 38
>PF13650 Asp_protease_2: Aspartyl protease
Probab=78.63 E-value=2.8 Score=32.04 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=22.7
Q ss_pred EEECCEEeeccCcEEEeccccccccCHHHHHHH
Q 013377 312 VSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 344 (444)
Q Consensus 312 i~vg~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 344 (444)
++|+|+.+ .++||||.+.+.+.++.++++
T Consensus 3 v~vng~~~----~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV----RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE----EEEEcCCCCcEEECHHHHHHc
Confidence 67787743 699999999999998765544
No 39
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=73.41 E-value=4.9 Score=31.21 Aligned_cols=30 Identities=17% Similarity=0.482 Sum_probs=24.1
Q ss_pred EEEECCEEeeccCcEEEeccccccccCHHHHHHH
Q 013377 311 QVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 344 (444)
Q Consensus 311 ~i~vg~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 344 (444)
.+.|+|+.+ .+++|||++.+.++++.+..+
T Consensus 4 ~~~Ing~~i----~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPL----KFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEE----EEEEcCCcceEEeCHHHHHHh
Confidence 467888865 589999999999999766544
No 40
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=73.09 E-value=4.6 Score=33.50 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=25.5
Q ss_pred CCeeEEEEEEEEECCEEeeccCcEEEeccccccccCHHHHHH
Q 013377 302 HPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQ 343 (444)
Q Consensus 302 ~~~y~v~l~~i~vg~~~~~~~~~~iiDSGTs~~~lp~~~~~~ 343 (444)
.++|.+ .+.|+|++ ..++||||.+.+.++++..++
T Consensus 9 ~g~~~v---~~~InG~~----~~flVDTGAs~t~is~~~A~~ 43 (121)
T TIGR02281 9 DGHFYA---TGRVNGRN----VRFLVDTGATSVALNEEDAQR 43 (121)
T ss_pred CCeEEE---EEEECCEE----EEEEEECCCCcEEcCHHHHHH
Confidence 345543 46678874 469999999999999865433
No 41
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=72.05 E-value=5.5 Score=30.99 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=21.2
Q ss_pred EEEecCCCeEEEEEEeCCCCceeEecC
Q 013377 108 NVSVGQPALSFIVALDTGSDLFWLPCD 134 (444)
Q Consensus 108 ~v~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (444)
.+.|+ .|.+.+++|||.+++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45666 89999999999999998764
No 42
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=71.07 E-value=8.2 Score=28.62 Aligned_cols=30 Identities=27% Similarity=0.626 Sum_probs=23.3
Q ss_pred EEEECCEEeeccCcEEEeccccccccCHHHHHHH
Q 013377 311 QVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 344 (444)
Q Consensus 311 ~i~vg~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 344 (444)
.+.|+++.+ .+++|||.+-.+++....+.+
T Consensus 12 ~~~I~g~~~----~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQV----KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEE----EEEEeCCCcceecCHHHHHHh
Confidence 466777665 399999999999998765544
No 43
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=70.40 E-value=8.8 Score=29.51 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=23.3
Q ss_pred EEEEECCEEeeccCcEEEeccccccccCHHHHHHH
Q 013377 310 TQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 344 (444)
Q Consensus 310 ~~i~vg~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 344 (444)
..+.|+++.+ .++||||++.+.++.+..+.+
T Consensus 5 v~v~i~~~~~----~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 5 VPVTINGQPV----RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCEEE----EEEEECCCCcEEcCHHHHHHc
Confidence 3467777654 699999999999998765443
No 44
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=70.18 E-value=7.2 Score=33.05 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=17.4
Q ss_pred ceEeccceeeeeEEEEeCCCC
Q 013377 422 VNIIGREYPIANNISLFHNCY 442 (444)
Q Consensus 422 ~~IlG~~fl~~~yvvfD~~~~ 442 (444)
..|||..+|+.+..+-|-.++
T Consensus 105 DvILGm~WL~~~~~~IDw~~k 125 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATK 125 (135)
T ss_pred eeEeccchHHhCCCEEEccCC
Confidence 579999999999888876554
No 45
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=68.38 E-value=6.8 Score=30.16 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=20.9
Q ss_pred EEEecCCCeEEEEEEeCCCCceeEecC
Q 013377 108 NVSVGQPALSFIVALDTGSDLFWLPCD 134 (444)
Q Consensus 108 ~v~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (444)
.+.|. .+++.+++|||.+.+-+...
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHH
Confidence 34555 78999999999999999775
No 46
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=62.17 E-value=7.8 Score=35.09 Aligned_cols=41 Identities=12% Similarity=0.026 Sum_probs=25.2
Q ss_pred cCCCeEEEEEcCCccEEEcCCeEEEEeCCCCeeEEEEEEEeCCCceEeccceeeeeEE
Q 013377 378 FEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGREYPIANNI 435 (444)
Q Consensus 378 ~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~~~~Cl~~~~~~~~~IlG~~fl~~~yv 435 (444)
...+.+.+.+ ++..|.+| .-|..+ ++-..|||++|+|.|+=
T Consensus 65 ~~~~~~~i~I-~~~~F~IP-~iYq~~---------------~g~d~IlG~NF~r~y~P 105 (201)
T PF02160_consen 65 KKAKNGKIQI-ADKIFRIP-TIYQQE---------------SGIDIILGNNFLRLYEP 105 (201)
T ss_pred EEecCceEEE-ccEEEecc-EEEEec---------------CCCCEEecchHHHhcCC
Confidence 3456777777 66777766 222111 12267999999997753
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=58.84 E-value=13 Score=28.48 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=22.9
Q ss_pred EEECCEEeeccCcEEEeccccccccCHHHHHHH
Q 013377 312 VSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 344 (444)
Q Consensus 312 i~vg~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 344 (444)
+.|+|+.+ .+++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~----~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI----VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE----EEEEECCCCeEEECHHHhhhc
Confidence 56777754 589999999999998766553
No 48
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=56.79 E-value=29 Score=30.29 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=15.8
Q ss_pred CcEEEeccccccccCHHHHHH
Q 013377 323 FSAIFDSGTSFTYLNDPAYTQ 343 (444)
Q Consensus 323 ~~~iiDSGTs~~~lp~~~~~~ 343 (444)
..++||||+...++-.+..+.
T Consensus 46 i~vLfDSGSPTSfIr~di~~k 66 (177)
T PF12384_consen 46 IKVLFDSGSPTSFIRSDIVEK 66 (177)
T ss_pred EEEEEeCCCccceeehhhHHh
Confidence 369999999988877655433
No 49
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=53.00 E-value=12 Score=29.41 Aligned_cols=25 Identities=20% Similarity=0.600 Sum_probs=19.9
Q ss_pred EEEECCEEeeccCcEEEeccccccccCHH
Q 013377 311 QVSVGGNAVNFEFSAIFDSGTSFTYLNDP 339 (444)
Q Consensus 311 ~i~vg~~~~~~~~~~iiDSGTs~~~lp~~ 339 (444)
.|.++++.+ .++||||...+.++.+
T Consensus 9 ~v~i~g~~i----~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 9 TVKINGKKI----KALLDTGADVSIISEK 33 (100)
T ss_dssp EEEETTEEE----EEEEETTBSSEEESSG
T ss_pred EEeECCEEE----EEEEecCCCcceeccc
Confidence 366677644 5999999999999974
No 50
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=49.39 E-value=14 Score=29.00 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=22.4
Q ss_pred EEECCEEeeccCcEEEeccccccccCHHHHHHH
Q 013377 312 VSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 344 (444)
Q Consensus 312 i~vg~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 344 (444)
+.++++ .+..+.+|||.+...||...|+.+
T Consensus 3 ~~i~g~---~~v~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 3 MKINGK---QSVKFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred eEeCCc---eeEEEEEecCCEEEeccHHHHhhh
Confidence 556663 234689999999999998776554
No 51
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=48.05 E-value=15 Score=30.61 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=26.0
Q ss_pred eEEEEEEecCCCeEEEEEEeCCCCceeEecC-CCCCC
Q 013377 104 LHYTNVSVGQPALSFIVALDTGSDLFWLPCD-CVSCV 139 (444)
Q Consensus 104 ~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~-C~~C~ 139 (444)
..|+++.|. .+++++++|||.-.+-+... +..|.
T Consensus 24 mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~g 58 (124)
T PF09668_consen 24 MLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERCG 58 (124)
T ss_dssp --EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHTT
T ss_pred eEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHcC
Confidence 478999999 89999999999999999876 35663
No 52
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=40.67 E-value=37 Score=29.66 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=23.3
Q ss_pred EEEEecCCCeEEEEEEeCCCCceeEecC
Q 013377 107 TNVSVGQPALSFIVALDTGSDLFWLPCD 134 (444)
Q Consensus 107 ~~v~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (444)
..+.+++-..++.+++||||..-.+...
T Consensus 35 ~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEeecCcEEEEEEeCCCccceeehh
Confidence 5666677789999999999999888764
No 53
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=39.82 E-value=92 Score=28.35 Aligned_cols=38 Identities=21% Similarity=0.054 Sum_probs=31.3
Q ss_pred eeee-ccCCceEEEEEEecCCCeEEEEEEeCCCCceeEecC
Q 013377 95 TYRL-NSLGFLHYTNVSVGQPALSFIVALDTGSDLFWLPCD 134 (444)
Q Consensus 95 ~~~~-~~~~~~y~~~v~iGtP~q~~~v~vDTGS~~~Wv~~~ 134 (444)
++.+ ...++.|+++..|- .|++..++|||-+.+-++..
T Consensus 95 ~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~ 133 (215)
T COG3577 95 EVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEE 133 (215)
T ss_pred EEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHH
Confidence 4555 45667788999998 99999999999999988764
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=35.34 E-value=50 Score=27.51 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=21.7
Q ss_pred EEEECCEEeeccCcEEEeccccccccCHHHHHH
Q 013377 311 QVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQ 343 (444)
Q Consensus 311 ~i~vg~~~~~~~~~~iiDSGTs~~~lp~~~~~~ 343 (444)
.++++|+.+ .++||||+..+.++.+..++
T Consensus 28 ~~~ing~~v----kA~VDtGAQ~tims~~~a~r 56 (124)
T PF09668_consen 28 NCKINGVPV----KAFVDTGAQSTIMSKSCAER 56 (124)
T ss_dssp EEEETTEEE----EEEEETT-SS-EEEHHHHHH
T ss_pred EEEECCEEE----EEEEeCCCCccccCHHHHHH
Confidence 467888875 59999999999999876554
No 55
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=35.00 E-value=88 Score=28.48 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=25.0
Q ss_pred CCeeEEEEEEEEECCEEeeccCcEEEeccccccccCHHH
Q 013377 302 HPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPA 340 (444)
Q Consensus 302 ~~~y~v~l~~i~vg~~~~~~~~~~iiDSGTs~~~lp~~~ 340 (444)
+++|.+ ...|||+.+ ..++|||.|.+.|+++.
T Consensus 103 ~GHF~a---~~~VNGk~v----~fLVDTGATsVal~~~d 134 (215)
T COG3577 103 DGHFEA---NGRVNGKKV----DFLVDTGATSVALNEED 134 (215)
T ss_pred CCcEEE---EEEECCEEE----EEEEecCcceeecCHHH
Confidence 455553 567899876 48999999999999864
No 56
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=34.54 E-value=26 Score=29.00 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=16.7
Q ss_pred EEEecccc-ccccCHHHHHHH
Q 013377 325 AIFDSGTS-FTYLNDPAYTQI 344 (444)
Q Consensus 325 ~iiDSGTs-~~~lp~~~~~~l 344 (444)
.+||||-+ ++.+|.++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999876654
No 57
>PF11587 Prion_bPrPp: Major prion protein bPrPp - N terminal; PDB: 1SKH_A.
Probab=31.03 E-value=41 Score=20.20 Aligned_cols=21 Identities=19% Similarity=0.051 Sum_probs=14.4
Q ss_pred CCCcccccchhhHHHHHhhhc
Q 013377 1 MASSYRNSPVCVLLILLSCCA 21 (444)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (444)
|+.++-.+++++|+++...=+
T Consensus 1 M~k~~lgcWilvLfvatwsdv 21 (29)
T PF11587_consen 1 MVKSHLGCWILVLFVATWSDV 21 (29)
T ss_dssp --TTTTTTHHHHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHHhhh
Confidence 788888999888887765433
No 58
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=24.78 E-value=98 Score=24.85 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEEEecCC----CeEEEEEEeCCCCcee-Eec
Q 013377 107 TNVSVGQP----ALSFIVALDTGSDLFW-LPC 133 (444)
Q Consensus 107 ~~v~iGtP----~q~~~v~vDTGS~~~W-v~~ 133 (444)
+++.|..| .-++.+++|||.+..- ++.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~ 33 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPP 33 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCH
Confidence 57777777 2378999999999764 554
Done!