BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013379
         (444 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DLX|A Chain A, Solution Structure Of The Uas Domain Of Human Ubx Domain-
           Containing Protein 7
          Length = 153

 Score =  131 bits (329), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 83/133 (62%), Gaps = 1/133 (0%)

Query: 142 AASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRD 201
            +S  D     LA L+RPP  LM  GSFE AK+   +Q+KWL++N+Q+ ++F+   LNRD
Sbjct: 4   GSSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRD 63

Query: 202 TWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV 261
            W+NEAV   I  +FIFWQVY D+ EG++   +YKL   P V ++DP TGQK+  W   +
Sbjct: 64  VWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEW-HQL 122

Query: 262 QPESLLEDLVPFM 274
              S L+ +  F+
Sbjct: 123 DVSSFLDQVTGFL 135


>pdb|2CR5|A Chain A, Solution Structure Of The Ubx Domain Of D0h8s2298e Protein
          Length = 109

 Score = 36.6 bits (83), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 353 PILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTH 412
           P LPEEP      +  V +R P+GR ++R F ++   Q+L  +      G     +RL+ 
Sbjct: 10  PDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV--GYHKSLYRLST 67

Query: 413 AIPGATKSLDYDSKLTFEDSGLA 435
           + P   ++L+ +   + ED G+ 
Sbjct: 68  SFP--RRALEVEGGSSLEDIGIT 88


>pdb|2DZL|A Chain A, Solution Structure Of The Uba Domain In Human Protein
          Fam100b
          Length = 66

 Score = 32.0 bits (71), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFY 48
          Q M++ F+ +A G  A+ A Q LQA  W+ + A+  F+
Sbjct: 18 QVMINQFV-LAAGCAADQAKQLLQAAHWQFETALSTFF 54


>pdb|1Y8B|A Chain A, Solution Nmr-Derived Global Fold Of Malate Synthase G From
           E.Coli
          Length = 731

 Score = 30.4 bits (67), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 93  VVRDTLYDDAMFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESE 139
           +VR  L DD  + A  G+   LH   SL+  RN    M  P +W+SE
Sbjct: 309 IVR-KLNDDRHYTAADGSEISLH-GRSLLFIRNVGHLMTIPVIWDSE 353


>pdb|2JQX|A Chain A, Solution Structure Of Malate Synthase G From Joint
           Refinement Against Nmr And Saxs Data
          Length = 723

 Score = 30.4 bits (67), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 93  VVRDTLYDDAMFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESE 139
           +VR  L DD  + A  G+   LH   SL+  RN    M  P +W+SE
Sbjct: 309 IVR-KLNDDRHYTAADGSEISLH-GRSLLFIRNVGHLMTIPVIWDSE 353


>pdb|1P7T|A Chain A, Structure Of Escherichia Coli Malate Synthase
           G:pyruvate:acetyl- Coenzyme A Abortive Ternary Complex
           At 1.95 Angstrom Resolution
          Length = 731

 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 93  VVRDTLYDDAMFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESE 139
           +VR  L DD  + A  G+   LH   SL+  RN    M  P +W+SE
Sbjct: 309 IVR-KLNDDRHYTAADGSEISLH-GRSLLFIRNVGHLMTIPVIWDSE 353


>pdb|1P7T|B Chain B, Structure Of Escherichia Coli Malate Synthase
           G:pyruvate:acetyl- Coenzyme A Abortive Ternary Complex
           At 1.95 Angstrom Resolution
          Length = 731

 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 93  VVRDTLYDDAMFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESE 139
           +VR  L DD  + A  G+   LH   SL+  RN    M  P +W+SE
Sbjct: 309 IVR-KLNDDRHYTAADGSEISLH-GRSLLFIRNVGHLMTIPVIWDSE 353


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.129    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,751,379
Number of Sequences: 62578
Number of extensions: 519490
Number of successful extensions: 842
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 840
Number of HSP's gapped (non-prelim): 8
length of query: 444
length of database: 14,973,337
effective HSP length: 102
effective length of query: 342
effective length of database: 8,590,381
effective search space: 2937910302
effective search space used: 2937910302
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)