Query 013379
Match_columns 444
No_of_seqs 319 out of 1271
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 03:15:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1364 Predicted ubiquitin re 100.0 1.7E-43 3.6E-48 340.0 17.4 344 7-444 3-356 (356)
2 KOG1363 Predicted regulator of 100.0 1.7E-33 3.6E-38 287.6 11.5 286 149-444 147-460 (460)
3 cd02991 UAS_ETEA UAS family, E 99.9 9.1E-27 2E-31 198.2 14.9 114 164-277 1-116 (116)
4 smart00594 UAS UAS domain. 99.9 9.9E-26 2.1E-30 194.1 13.1 116 156-271 2-122 (122)
5 cd02990 UAS_FAF1 UAS family, F 99.9 3.6E-25 7.8E-30 191.6 14.2 114 164-277 1-136 (136)
6 cd02958 UAS UAS family; UAS is 99.9 1.7E-24 3.7E-29 184.1 14.1 113 164-276 1-113 (114)
7 KOG2507 Ubiquitin regulatory p 99.9 2.5E-21 5.4E-26 190.0 18.9 110 163-274 2-111 (506)
8 cd01770 p47_UBX p47-like ubiqu 99.8 9.7E-21 2.1E-25 149.8 10.4 77 365-444 3-79 (79)
9 cd01774 Faf1_like2_UBX Faf1 ik 99.8 2.1E-19 4.7E-24 143.9 10.0 79 364-444 2-84 (85)
10 cd01767 UBX UBX (ubiquitin reg 99.8 2.7E-19 5.8E-24 141.4 10.0 75 366-444 2-77 (77)
11 cd01773 Faf1_like1_UBX Faf1 ik 99.8 3.2E-19 7E-24 140.6 10.1 77 363-442 2-78 (82)
12 cd01771 Faf1_UBX Faf1 UBX doma 99.8 8.2E-19 1.8E-23 139.0 9.9 76 364-442 2-78 (80)
13 smart00166 UBX Domain present 99.7 1.4E-17 3E-22 132.6 9.8 76 365-443 3-80 (80)
14 PF00789 UBX: UBX domain; Int 99.7 1.1E-17 2.4E-22 133.7 8.8 79 363-443 3-82 (82)
15 cd01772 SAKS1_UBX SAKS1-like U 99.7 3.5E-17 7.5E-22 129.8 9.5 76 364-442 2-77 (79)
16 PF13899 Thioredoxin_7: Thiore 99.4 2.3E-12 5E-17 102.9 10.8 80 166-248 3-82 (82)
17 PF14555 UBA_4: UBA-like domai 99.4 6.6E-13 1.4E-17 92.6 4.3 42 11-53 1-42 (43)
18 KOG2086 Protein tyrosine phosp 99.3 2.5E-12 5.4E-17 127.0 6.5 78 364-444 303-380 (380)
19 cd02960 AGR Anterior Gradient 99.3 1.2E-11 2.7E-16 106.6 8.0 92 165-260 8-99 (130)
20 KOG2689 Predicted ubiquitin re 99.2 3E-11 6.4E-16 113.7 9.5 78 364-443 208-286 (290)
21 cd02955 SSP411 TRX domain, SSP 99.2 1.6E-10 3.5E-15 99.5 12.6 90 170-260 5-100 (124)
22 cd02951 SoxW SoxW family; SoxW 99.2 3.7E-10 8E-15 97.2 13.3 108 169-276 2-121 (125)
23 cd02953 DsbDgamma DsbD gamma f 99.0 1.9E-09 4.1E-14 89.6 10.9 100 171-270 2-103 (104)
24 PF03190 Thioredox_DsbH: Prote 98.8 1.9E-08 4.1E-13 89.9 9.8 107 165-275 22-142 (163)
25 PF13098 Thioredoxin_2: Thiore 98.8 5.4E-09 1.2E-13 87.8 5.3 94 176-270 1-112 (112)
26 COG2143 Thioredoxin-related pr 98.8 7.5E-08 1.6E-12 84.0 10.9 106 169-275 31-150 (182)
27 PRK00293 dipZ thiol:disulfide 98.6 1.8E-07 3.9E-12 100.7 12.0 105 167-273 461-569 (571)
28 cd02959 ERp19 Endoplasmic reti 98.6 1.1E-07 2.4E-12 81.1 7.7 102 168-274 7-113 (117)
29 cd02950 TxlA TRX-like protein 98.5 1.7E-06 3.6E-11 76.4 12.8 101 174-278 14-114 (142)
30 cd02956 ybbN ybbN protein fami 98.2 4E-05 8.7E-10 62.3 11.9 94 168-270 2-95 (96)
31 cd02997 PDI_a_PDIR PDIa family 98.1 4E-05 8.6E-10 62.9 11.0 90 175-269 12-103 (104)
32 PRK10996 thioredoxin 2; Provis 98.1 7.7E-05 1.7E-09 65.5 13.2 91 176-273 48-138 (139)
33 cd02949 TRX_NTR TRX domain, no 98.1 9.9E-05 2.1E-09 60.4 12.6 86 178-270 11-96 (97)
34 PF00085 Thioredoxin: Thioredo 98.1 8.2E-05 1.8E-09 60.7 12.0 96 167-272 7-102 (103)
35 KOG0910 Thioredoxin-like prote 98.1 4.7E-05 1E-09 66.9 10.8 104 162-275 43-149 (150)
36 cd02985 TRX_CDSP32 TRX family, 98.1 7.5E-05 1.6E-09 62.0 11.8 93 168-271 5-100 (103)
37 cd02963 TRX_DnaJ TRX domain, D 97.9 0.00022 4.8E-09 60.0 12.1 100 165-271 7-109 (111)
38 COG4232 Thiol:disulfide interc 97.9 6.3E-05 1.4E-09 79.1 10.3 101 171-273 463-567 (569)
39 cd02993 PDI_a_APS_reductase PD 97.9 0.00014 3E-09 60.9 10.5 95 168-268 10-107 (109)
40 cd02948 TRX_NDPK TRX domain, T 97.9 0.00037 8.1E-09 57.6 12.5 87 176-271 13-100 (102)
41 TIGR01068 thioredoxin thioredo 97.8 0.00051 1.1E-08 55.6 12.5 89 178-273 12-100 (101)
42 cd02984 TRX_PICOT TRX domain, 97.8 0.00028 6E-09 57.3 10.3 92 168-269 4-95 (97)
43 PHA02278 thioredoxin-like prot 97.7 0.00055 1.2E-08 57.0 11.8 83 178-268 12-99 (103)
44 TIGR00385 dsbE periplasmic pro 97.7 0.00031 6.8E-09 63.9 10.9 92 177-275 60-172 (173)
45 cd03002 PDI_a_MPD1_like PDI fa 97.7 0.00034 7.3E-09 58.1 10.2 99 166-270 7-108 (109)
46 TIGR01126 pdi_dom protein disu 97.7 0.00053 1.2E-08 55.8 10.6 94 168-272 5-100 (102)
47 cd02947 TRX_family TRX family; 97.7 0.0006 1.3E-08 53.6 10.5 86 175-270 5-92 (93)
48 cd02961 PDI_a_family Protein D 97.7 0.00054 1.2E-08 55.1 10.3 92 172-269 7-100 (101)
49 PRK09381 trxA thioredoxin; Pro 97.6 0.0012 2.6E-08 54.9 12.2 90 178-274 19-108 (109)
50 cd03006 PDI_a_EFP1_N PDIa fami 97.6 0.0009 1.9E-08 56.7 11.1 96 165-268 15-111 (113)
51 COG1331 Highly conserved prote 97.6 0.00033 7.1E-09 75.0 9.8 89 165-254 28-122 (667)
52 cd02996 PDI_a_ERp44 PDIa famil 97.5 0.001 2.3E-08 55.3 10.7 92 167-269 9-107 (108)
53 cd03000 PDI_a_TMX3 PDIa family 97.5 0.00092 2E-08 55.3 10.1 96 168-272 4-102 (104)
54 cd03004 PDI_a_ERdj5_C PDIa fam 97.5 0.0016 3.5E-08 53.6 11.5 93 167-268 9-102 (104)
55 PLN00410 U5 snRNP protein, DIM 97.5 0.0014 3.1E-08 57.6 11.5 98 167-275 12-121 (142)
56 cd03011 TlpA_like_ScsD_MtbDsbE 97.4 0.00055 1.2E-08 58.1 7.7 94 173-270 13-122 (123)
57 PTZ00051 thioredoxin; Provisio 97.4 0.0027 5.9E-08 51.5 11.3 80 171-260 9-90 (98)
58 cd02999 PDI_a_ERp44_like PDIa 97.4 0.0012 2.7E-08 54.4 9.2 82 177-268 15-98 (100)
59 cd03003 PDI_a_ERdj5_N PDIa fam 97.4 0.0023 5E-08 52.5 10.6 90 168-268 10-99 (101)
60 KOG0907 Thioredoxin [Posttrans 97.4 0.0026 5.6E-08 53.2 10.7 84 167-260 8-93 (106)
61 cd02954 DIM1 Dim1 family; Dim1 97.3 0.0025 5.3E-08 54.0 10.5 84 179-272 13-109 (114)
62 PRK15412 thiol:disulfide inter 97.3 0.0026 5.6E-08 58.6 10.9 91 178-275 66-177 (185)
63 cd02995 PDI_a_PDI_a'_C PDIa fa 97.2 0.0027 5.8E-08 51.8 9.6 85 177-269 15-103 (104)
64 cd02986 DLP Dim1 family, Dim1- 97.2 0.0037 7.9E-08 52.8 10.3 95 167-273 3-110 (114)
65 TIGR02740 TraF-like TraF-like 97.2 0.0048 1E-07 60.4 12.7 93 177-275 163-265 (271)
66 cd02998 PDI_a_ERp38 PDIa famil 97.2 0.0024 5.3E-08 52.1 8.9 87 177-268 15-103 (105)
67 cd02957 Phd_like Phosducin (Ph 97.2 0.0027 5.9E-08 53.4 9.2 70 180-260 24-95 (113)
68 cd02994 PDI_a_TMX PDIa family, 97.2 0.0058 1.2E-07 50.0 10.9 92 166-271 8-100 (101)
69 cd03005 PDI_a_ERp46 PDIa famil 97.2 0.0071 1.5E-07 49.2 11.3 89 168-268 9-100 (102)
70 TIGR01295 PedC_BrcD bacterioci 97.1 0.0085 1.8E-07 51.4 11.9 94 168-270 12-120 (122)
71 PRK03147 thiol-disulfide oxido 97.1 0.0061 1.3E-07 54.8 11.5 88 178-272 59-170 (173)
72 cd03065 PDI_b_Calsequestrin_N 97.1 0.008 1.7E-07 51.4 11.4 96 167-274 17-119 (120)
73 PTZ00443 Thioredoxin domain-co 97.1 0.0061 1.3E-07 57.9 11.7 104 165-275 36-140 (224)
74 PF03943 TAP_C: TAP C-terminal 97.1 0.0004 8.6E-09 50.1 2.7 41 12-53 2-42 (51)
75 cd03001 PDI_a_P5 PDIa family, 97.1 0.01 2.2E-07 48.4 11.4 86 178-269 16-101 (103)
76 cd02965 HyaE HyaE family; HyaE 97.1 0.014 3E-07 49.2 12.1 102 151-268 4-110 (111)
77 smart00804 TAP_C C-terminal do 97.0 0.0011 2.4E-08 49.9 4.5 44 5-50 8-51 (63)
78 cd02989 Phd_like_TxnDC9 Phosdu 97.0 0.0062 1.4E-07 51.4 9.5 77 174-260 16-94 (113)
79 TIGR02738 TrbB type-F conjugat 96.9 0.009 1.9E-07 53.4 10.5 91 177-273 47-152 (153)
80 cd02975 PfPDO_like_N Pyrococcu 96.9 0.015 3.3E-07 49.0 11.5 93 173-275 15-111 (113)
81 cd03010 TlpA_like_DsbE TlpA-li 96.9 0.0054 1.2E-07 52.4 8.9 83 176-265 21-125 (127)
82 cd02982 PDI_b'_family Protein 96.8 0.01 2.2E-07 48.5 9.1 89 180-273 12-102 (103)
83 TIGR02739 TraF type-F conjugat 96.8 0.018 3.9E-07 55.7 11.9 92 180-277 150-251 (256)
84 cd02966 TlpA_like_family TlpA- 96.7 0.0085 1.8E-07 48.9 8.0 79 174-259 13-116 (116)
85 cd03009 TryX_like_TryX_NRX Try 96.7 0.013 2.7E-07 50.4 9.3 72 178-256 16-115 (131)
86 PRK13703 conjugal pilus assemb 96.6 0.027 5.9E-07 54.2 12.0 92 180-277 143-244 (248)
87 cd02987 Phd_like_Phd Phosducin 96.6 0.021 4.7E-07 52.1 10.7 82 167-260 71-154 (175)
88 cd02962 TMX2 TMX2 family; comp 96.6 0.026 5.7E-07 50.3 10.8 81 167-259 36-126 (152)
89 cd00194 UBA Ubiquitin Associat 96.6 0.005 1.1E-07 41.2 4.6 36 12-49 3-38 (38)
90 PF00627 UBA: UBA/TS-N domain; 96.5 0.004 8.7E-08 41.6 4.1 34 11-46 3-36 (37)
91 PF11543 UN_NPL4: Nuclear pore 96.5 0.0057 1.2E-07 48.4 5.6 72 366-440 4-75 (80)
92 TIGR01130 ER_PDI_fam protein d 96.5 0.019 4.2E-07 59.8 11.2 92 177-275 15-110 (462)
93 TIGR00424 APS_reduc 5'-adenyly 96.5 0.025 5.4E-07 59.3 11.6 114 153-271 344-460 (463)
94 PF13728 TraF: F plasmid trans 96.5 0.029 6.4E-07 53.0 11.0 86 179-270 119-214 (215)
95 smart00165 UBA Ubiquitin assoc 96.5 0.0053 1.1E-07 40.9 4.3 36 11-48 2-37 (37)
96 cd01806 Nedd8 Nebb8-like ubiq 96.4 0.021 4.7E-07 44.1 8.3 68 368-442 2-70 (76)
97 PTZ00102 disulphide isomerase; 96.4 0.02 4.3E-07 60.3 10.1 97 167-275 40-139 (477)
98 cd01792 ISG15_repeat1 ISG15 ub 96.3 0.032 6.8E-07 44.0 8.5 71 367-442 3-74 (80)
99 PRK14018 trifunctional thiored 96.3 0.037 7.9E-07 58.9 11.4 86 179-271 55-170 (521)
100 cd03008 TryX_like_RdCVF Trypar 96.3 0.018 3.8E-07 51.1 7.7 77 179-256 24-128 (146)
101 cd01791 Ubl5 UBL5 ubiquitin-li 96.2 0.046 9.9E-07 42.5 9.0 70 367-443 2-72 (73)
102 cd02992 PDI_a_QSOX PDIa family 96.2 0.055 1.2E-06 45.6 10.0 77 167-249 9-88 (114)
103 cd01809 Scythe_N Ubiquitin-lik 96.1 0.03 6.6E-07 42.7 7.4 70 367-443 1-71 (72)
104 PLN02309 5'-adenylylsulfate re 96.0 0.068 1.5E-06 56.1 11.8 99 168-272 354-455 (457)
105 PTZ00062 glutaredoxin; Provisi 96.0 0.096 2.1E-06 49.0 11.6 85 170-273 7-93 (204)
106 cd01807 GDX_N ubiquitin-like d 96.0 0.04 8.7E-07 42.7 7.6 68 368-442 2-70 (74)
107 PF13905 Thioredoxin_8: Thiore 96.0 0.055 1.2E-06 43.5 8.8 69 180-252 1-94 (95)
108 cd02964 TryX_like_family Trypa 96.0 0.049 1.1E-06 46.9 9.0 79 171-256 8-115 (132)
109 cd01763 Sumo Small ubiquitin-r 95.8 0.1 2.2E-06 41.9 9.6 72 362-440 7-79 (87)
110 cd02952 TRP14_like Human TRX-r 95.8 0.078 1.7E-06 45.3 9.3 66 179-252 20-101 (119)
111 COG3118 Thioredoxin domain-con 95.8 0.066 1.4E-06 52.3 9.8 99 166-275 30-131 (304)
112 cd02988 Phd_like_VIAF Phosduci 95.7 0.16 3.5E-06 47.1 11.9 80 167-260 90-171 (192)
113 cd02969 PRX_like1 Peroxiredoxi 95.7 0.13 2.9E-06 46.3 10.9 93 179-278 24-156 (171)
114 PTZ00102 disulphide isomerase; 95.6 0.053 1.2E-06 57.1 9.4 101 166-275 364-466 (477)
115 PTZ00044 ubiquitin; Provisiona 95.6 0.071 1.5E-06 41.3 7.6 68 368-442 2-70 (76)
116 cd03017 PRX_BCP Peroxiredoxin 95.5 0.13 2.9E-06 44.3 10.0 39 230-269 91-138 (140)
117 cd01794 DC_UbP_C dendritic cel 95.5 0.057 1.2E-06 41.5 6.5 66 369-441 1-67 (70)
118 TIGR02187 GlrX_arch Glutaredox 95.4 0.11 2.4E-06 48.9 9.9 89 179-275 19-112 (215)
119 PLN02919 haloacid dehalogenase 95.4 0.086 1.9E-06 61.2 10.8 93 179-278 419-540 (1057)
120 PRK11509 hydrogenase-1 operon 95.4 0.13 2.7E-06 44.8 9.2 115 147-277 8-127 (132)
121 cd01804 midnolin_N Ubiquitin-l 95.4 0.11 2.3E-06 40.9 8.0 67 367-441 2-69 (78)
122 PRK13728 conjugal transfer pro 95.3 0.19 4E-06 46.2 10.6 86 184-276 73-173 (181)
123 cd01803 Ubiquitin Ubiquitin. U 95.3 0.1 2.2E-06 40.3 7.6 68 368-442 2-70 (76)
124 TIGR02661 MauD methylamine deh 95.1 0.26 5.7E-06 45.4 11.0 88 178-276 72-180 (189)
125 cd02967 mauD Methylamine utili 95.1 0.19 4.1E-06 41.6 9.2 72 179-254 20-109 (114)
126 cd01805 RAD23_N Ubiquitin-like 95.0 0.14 3.1E-06 39.7 7.6 67 368-441 2-71 (77)
127 PF13881 Rad60-SLD_2: Ubiquiti 94.9 0.13 2.9E-06 43.3 7.7 65 366-436 2-73 (111)
128 PTZ00056 glutathione peroxidas 94.9 0.25 5.5E-06 46.0 10.4 89 179-275 38-179 (199)
129 cd01812 BAG1_N Ubiquitin-like 94.9 0.15 3.3E-06 38.8 7.3 68 367-442 1-69 (71)
130 PHA02125 thioredoxin-like prot 94.8 0.18 4E-06 39.0 7.9 72 183-270 1-73 (75)
131 cd03012 TlpA_like_DipZ_like Tl 94.8 0.19 4.1E-06 42.8 8.7 74 179-259 22-124 (126)
132 cd01798 parkin_N amino-termina 94.8 0.15 3.2E-06 39.0 7.0 66 369-441 1-67 (70)
133 cd01810 ISG15_repeat2 ISG15 ub 94.7 0.15 3.2E-06 39.5 6.9 67 369-442 1-68 (74)
134 cd01814 NTGP5 Ubiquitin-like N 94.4 0.11 2.4E-06 43.5 5.9 64 365-434 3-73 (113)
135 cd01796 DDI1_N DNA damage indu 94.3 0.16 3.6E-06 39.0 6.4 66 369-440 1-67 (71)
136 PF00240 ubiquitin: Ubiquitin 94.1 0.2 4.4E-06 37.8 6.6 61 372-439 1-61 (69)
137 cd01802 AN1_N ubiquitin-like d 94.1 0.35 7.6E-06 40.2 8.3 71 365-442 26-97 (103)
138 TIGR00411 redox_disulf_1 small 94.0 0.71 1.5E-05 35.6 9.8 75 185-273 4-81 (82)
139 cd03007 PDI_a_ERp29_N PDIa fam 94.0 0.55 1.2E-05 39.9 9.5 92 167-271 9-113 (116)
140 TIGR01130 ER_PDI_fam protein d 93.9 0.32 6.9E-06 50.6 9.8 97 166-273 353-453 (462)
141 cd01808 hPLIC_N Ubiquitin-like 93.9 0.38 8.3E-06 36.8 7.7 68 368-443 2-70 (71)
142 PLN02412 probable glutathione 93.9 0.37 8E-06 43.5 8.8 35 240-275 131-165 (167)
143 PLN02399 phospholipid hydroper 93.8 0.75 1.6E-05 44.1 11.2 34 240-274 201-234 (236)
144 PRK10382 alkyl hydroperoxide r 93.7 0.97 2.1E-05 41.7 11.5 90 179-271 30-153 (187)
145 PRK15000 peroxidase; Provision 93.5 0.98 2.1E-05 42.1 11.2 91 179-272 33-160 (200)
146 PF08534 Redoxin: Redoxin; In 93.4 0.65 1.4E-05 40.3 9.5 33 229-262 95-136 (146)
147 PF11976 Rad60-SLD: Ubiquitin- 93.4 0.44 9.6E-06 36.3 7.3 66 367-439 1-67 (72)
148 PRK09437 bcp thioredoxin-depen 93.1 1.2 2.5E-05 39.2 10.6 23 241-264 121-143 (154)
149 TIGR03137 AhpC peroxiredoxin. 92.7 0.83 1.8E-05 42.0 9.3 90 179-271 30-153 (187)
150 PF14836 Ubiquitin_3: Ubiquiti 92.6 0.43 9.2E-06 38.4 6.2 62 378-441 15-76 (88)
151 cd00340 GSH_Peroxidase Glutath 92.4 0.87 1.9E-05 40.2 8.8 25 242-267 125-149 (152)
152 KOG2244 Highly conserved prote 92.3 0.17 3.7E-06 53.0 4.6 82 168-249 100-187 (786)
153 PF02845 CUE: CUE domain; Int 92.3 0.29 6.2E-06 33.5 4.3 39 11-49 2-40 (42)
154 smart00213 UBQ Ubiquitin homol 92.2 0.56 1.2E-05 34.4 6.3 62 368-437 2-63 (64)
155 cd01769 UBL Ubiquitin-like dom 92.0 1 2.2E-05 33.5 7.5 66 371-443 2-68 (69)
156 KOG2501 Thioredoxin, nucleored 91.9 0.67 1.5E-05 41.3 7.3 73 178-254 31-129 (157)
157 smart00546 CUE Domain that may 91.6 0.5 1.1E-05 32.4 5.0 39 12-50 4-42 (43)
158 KOG0908 Thioredoxin-like prote 91.6 1.2 2.5E-05 42.7 8.8 90 175-275 16-107 (288)
159 PF00578 AhpC-TSA: AhpC/TSA fa 91.4 1.3 2.8E-05 37.0 8.4 70 179-255 24-123 (124)
160 TIGR02540 gpx7 putative glutat 91.4 3 6.5E-05 36.7 11.1 34 239-273 115-152 (153)
161 KOG2086 Protein tyrosine phosp 91.2 0.071 1.5E-06 53.7 0.4 40 11-51 5-44 (380)
162 TIGR02187 GlrX_arch Glutaredox 91.0 2.1 4.6E-05 40.1 10.3 83 177-272 129-214 (215)
163 cd01797 NIRF_N amino-terminal 91.0 1.5 3.2E-05 34.4 7.6 68 368-442 2-72 (78)
164 KOG4351 Uncharacterized conser 90.9 0.036 7.9E-07 51.8 -1.8 49 4-52 17-67 (244)
165 cd03015 PRX_Typ2cys Peroxiredo 90.8 1.4 3.1E-05 39.7 8.6 92 178-272 27-155 (173)
166 TIGR00601 rad23 UV excision re 90.7 0.89 1.9E-05 46.6 7.8 66 368-440 2-70 (378)
167 TIGR01626 ytfJ_HI0045 conserve 90.5 2.8 6.1E-05 38.6 10.3 37 231-268 137-174 (184)
168 PRK00522 tpx lipid hydroperoxi 90.1 3.3 7.1E-05 37.3 10.3 40 230-270 112-165 (167)
169 PF13848 Thioredoxin_6: Thiore 90.1 2.8 6E-05 37.6 9.9 90 177-271 91-183 (184)
170 TIGR00412 redox_disulf_2 small 90.0 2.6 5.5E-05 32.6 8.3 69 185-270 3-75 (76)
171 TIGR00264 alpha-NAC-related pr 89.7 0.44 9.5E-06 40.2 3.8 32 13-45 81-112 (116)
172 PRK13190 putative peroxiredoxi 88.8 3.9 8.4E-05 38.1 10.0 92 179-273 26-153 (202)
173 PRK06369 nac nascent polypepti 88.7 0.56 1.2E-05 39.6 3.8 34 12-46 78-111 (115)
174 PTZ00253 tryparedoxin peroxida 88.7 3.8 8.2E-05 38.0 9.8 90 179-271 35-161 (199)
175 cd01793 Fubi Fubi ubiquitin-li 87.5 4 8.7E-05 31.3 7.8 66 368-442 2-68 (74)
176 cd02971 PRX_family Peroxiredox 87.4 5.4 0.00012 34.0 9.5 31 230-261 91-130 (140)
177 PTZ00137 2-Cys peroxiredoxin; 87.1 8.3 0.00018 37.6 11.4 90 179-271 97-222 (261)
178 cd00196 UBQ Ubiquitin-like pro 86.9 3.1 6.6E-05 28.9 6.6 64 371-441 2-66 (69)
179 cd01813 UBP_N UBP ubiquitin pr 85.6 5.3 0.00012 30.9 7.6 69 368-441 2-71 (74)
180 PRK13191 putative peroxiredoxi 85.4 11 0.00023 35.6 11.0 91 179-272 32-159 (215)
181 PRK13189 peroxiredoxin; Provis 84.8 7.6 0.00016 36.8 9.7 42 230-272 109-161 (222)
182 PF08817 YukD: WXG100 protein 84.0 2.7 5.9E-05 32.8 5.3 71 366-441 2-77 (79)
183 KOG0191 Thioredoxin/protein di 83.7 6.8 0.00015 40.2 9.6 94 175-275 42-135 (383)
184 cd01790 Herp_N Homocysteine-re 83.3 7.6 0.00017 30.6 7.5 70 367-442 2-77 (79)
185 KOG3763 mRNA export factor TAP 83.1 1.5 3.3E-05 46.4 4.5 43 10-53 535-577 (585)
186 COG1225 Bcp Peroxiredoxin [Pos 82.5 19 0.00041 32.3 10.6 96 173-272 23-154 (157)
187 cd03014 PRX_Atyp2cys Peroxired 82.4 7 0.00015 33.7 7.9 74 179-259 25-128 (143)
188 KOG0912 Thiol-disulfide isomer 82.4 4.3 9.2E-05 40.1 6.9 93 179-274 12-106 (375)
189 cd03026 AhpF_NTD_C TRX-GRX-lik 82.2 19 0.00042 28.7 9.7 81 176-268 7-88 (89)
190 cd02968 SCO SCO (an acronym fo 82.1 7.5 0.00016 33.2 7.9 20 179-198 21-41 (142)
191 cd02970 PRX_like2 Peroxiredoxi 81.4 18 0.00039 30.9 10.1 64 180-248 24-88 (149)
192 cd01800 SF3a120_C Ubiquitin-li 81.1 6.1 0.00013 30.5 6.3 61 375-442 6-67 (76)
193 PRK10606 btuE putative glutath 81.0 17 0.00037 33.3 10.2 68 175-251 20-101 (183)
194 cd01799 Hoil1_N Ubiquitin-like 81.0 6.9 0.00015 30.4 6.5 62 372-440 8-71 (75)
195 cd03018 PRX_AhpE_like Peroxire 80.5 16 0.00035 31.4 9.6 31 229-260 97-133 (149)
196 PF09379 FERM_N: FERM N-termin 80.2 7 0.00015 30.2 6.4 63 371-435 1-65 (80)
197 PTZ00256 glutathione peroxidas 80.2 22 0.00047 32.4 10.7 38 236-274 141-181 (183)
198 PF14560 Ubiquitin_2: Ubiquiti 79.4 14 0.0003 29.3 8.0 73 367-440 2-78 (87)
199 KOG0190 Protein disulfide isom 77.3 8.3 0.00018 40.9 7.6 97 166-272 32-130 (493)
200 PF02114 Phosducin: Phosducin; 77.2 13 0.00027 36.4 8.5 101 168-278 135-238 (265)
201 cd01659 TRX_superfamily Thiore 76.9 7.7 0.00017 26.6 5.4 62 184-249 1-63 (69)
202 COG1308 EGD2 Transcription fac 76.6 3.7 8E-05 34.9 3.9 30 16-46 90-119 (122)
203 PRK13599 putative peroxiredoxi 76.5 19 0.00042 33.8 9.3 42 230-272 102-154 (215)
204 PF13192 Thioredoxin_3: Thiore 75.8 25 0.00053 27.0 8.3 69 188-270 6-75 (76)
205 CHL00098 tsf elongation factor 75.5 3.4 7.4E-05 38.5 3.8 38 12-50 3-40 (200)
206 TIGR00116 tsf translation elon 73.8 3.8 8.2E-05 40.5 3.9 38 12-50 6-43 (290)
207 PRK09377 tsf elongation factor 73.3 4 8.6E-05 40.4 3.9 38 12-50 7-44 (290)
208 cd03016 PRX_1cys Peroxiredoxin 73.1 20 0.00044 33.2 8.5 88 181-271 26-151 (203)
209 PRK12332 tsf elongation factor 72.9 4.4 9.5E-05 37.8 3.9 38 12-50 6-43 (198)
210 cd02983 P5_C P5 family, C-term 72.5 18 0.00039 31.2 7.4 66 208-276 49-117 (130)
211 cd01815 BMSC_UbP_N Ubiquitin-l 72.4 11 0.00025 29.3 5.5 52 384-441 18-72 (75)
212 COG5100 NPL4 Nuclear pore prot 71.4 15 0.00032 37.5 7.3 75 368-443 2-78 (571)
213 KOG1364 Predicted ubiquitin re 69.8 0.89 1.9E-05 45.4 -1.5 78 177-254 8-93 (356)
214 smart00295 B41 Band 4.1 homolo 68.9 34 0.00075 31.1 9.0 70 366-435 3-72 (207)
215 PRK11657 dsbG disulfide isomer 68.7 25 0.00055 33.9 8.3 41 229-271 209-249 (251)
216 KOG3414 Component of the U4/U6 68.4 78 0.0017 27.3 10.1 98 172-275 13-121 (142)
217 PRK10877 protein disulfide iso 68.2 36 0.00078 32.4 9.2 38 229-272 192-229 (232)
218 PF11470 TUG-UBL1: GLUT4 regul 66.5 14 0.00031 27.9 4.8 59 373-438 3-61 (65)
219 PF11009 DUF2847: Protein of u 66.5 51 0.0011 27.5 8.5 81 178-266 17-104 (105)
220 PF02809 UIM: Ubiquitin intera 65.4 8.2 0.00018 21.5 2.4 16 307-322 2-17 (18)
221 PLN02560 enoyl-CoA reductase 65.1 37 0.00081 33.9 8.8 72 368-442 2-81 (308)
222 PF06972 DUF1296: Protein of u 65.1 17 0.00036 26.9 4.6 39 11-50 6-45 (60)
223 PF11547 E3_UbLigase_EDD: E3 u 65.1 17 0.00036 25.7 4.4 41 10-50 9-49 (53)
224 KOG2756 Predicted Mg2+-depende 64.2 4.2 9.1E-05 39.4 1.8 35 16-50 30-64 (349)
225 cd01801 Tsc13_N Ubiquitin-like 64.2 29 0.00063 26.8 6.4 55 384-442 20-75 (77)
226 cd02973 TRX_GRX_like Thioredox 62.0 42 0.00092 24.5 6.8 53 185-245 4-58 (67)
227 COG0264 Tsf Translation elonga 61.3 11 0.00024 37.1 4.1 38 12-50 7-44 (296)
228 PF03765 CRAL_TRIO_N: CRAL/TRI 60.9 13 0.00029 26.6 3.6 25 23-47 28-52 (55)
229 PF06110 DUF953: Eukaryotic pr 56.4 18 0.00038 30.9 4.1 79 169-247 8-97 (119)
230 KOG1071 Mitochondrial translat 56.1 12 0.00027 37.0 3.5 38 11-49 47-84 (340)
231 smart00726 UIM Ubiquitin-inter 55.6 13 0.00027 22.8 2.3 18 307-324 1-18 (26)
232 cd01789 Alp11_N Ubiquitin-like 55.5 99 0.0021 24.3 8.2 73 367-441 2-78 (84)
233 KOG2792 Putative cytochrome C 53.5 35 0.00075 33.1 6.0 48 229-277 216-278 (280)
234 cd01777 SNX27_RA Ubiquitin dom 52.9 29 0.00064 27.8 4.6 34 367-400 2-35 (87)
235 cd01795 USP48_C USP ubiquitin- 52.8 61 0.0013 26.8 6.4 56 382-443 20-75 (107)
236 KOG2456 Aldehyde dehydrogenase 49.3 22 0.00048 36.6 4.2 39 154-192 334-372 (477)
237 KOG3077 Uncharacterized conser 49.1 7.9 0.00017 37.4 1.0 38 10-48 8-45 (260)
238 cd03072 PDI_b'_ERp44 PDIb' fam 48.5 50 0.0011 27.5 5.7 45 231-275 63-109 (111)
239 cd03073 PDI_b'_ERp72_ERp57 PDI 45.5 1.2E+02 0.0025 25.3 7.5 63 207-273 42-110 (111)
240 TIGR03143 AhpF_homolog putativ 44.4 1.4E+02 0.0031 32.2 9.9 80 177-270 472-554 (555)
241 KOG0190 Protein disulfide isom 44.3 61 0.0013 34.5 6.7 97 167-277 374-472 (493)
242 PF01216 Calsequestrin: Calseq 44.1 1.7E+02 0.0036 29.8 9.3 95 176-275 47-145 (383)
243 COG0526 TrxA Thiol-disulfide i 42.8 1.3E+02 0.0029 23.0 7.3 61 180-247 32-97 (127)
244 PF02966 DIM1: Mitosis protein 41.8 2.3E+02 0.005 24.6 8.7 91 177-274 17-117 (133)
245 COG2103 Predicted sugar phosph 41.3 37 0.0008 33.1 4.1 39 11-50 234-272 (298)
246 PRK05441 murQ N-acetylmuramic 41.0 29 0.00063 34.4 3.6 37 13-50 238-274 (299)
247 PF03474 DMA: DMRTA motif; In 40.7 25 0.00055 23.8 2.1 26 22-47 13-38 (39)
248 TIGR02196 GlrX_YruB Glutaredox 40.4 1.4E+02 0.003 21.5 8.5 66 186-269 4-72 (74)
249 PF14595 Thioredoxin_9: Thiore 37.6 56 0.0012 28.1 4.4 74 178-259 39-116 (129)
250 KOG4277 Uncharacterized conser 36.6 87 0.0019 31.1 5.9 102 165-273 29-131 (468)
251 PF07449 HyaE: Hydrogenase-1 e 36.5 1.5E+02 0.0032 24.8 6.6 47 212-262 57-103 (107)
252 PF13778 DUF4174: Domain of un 36.4 2.6E+02 0.0056 23.5 8.7 90 178-271 8-109 (118)
253 TIGR00274 N-acetylmuramic acid 36.2 39 0.00085 33.4 3.7 37 13-50 233-269 (291)
254 KOG0011 Nucleotide excision re 35.6 1.1E+02 0.0024 30.7 6.5 66 368-439 2-68 (340)
255 cd03013 PRX5_like Peroxiredoxi 35.3 1.3E+02 0.0029 26.4 6.7 67 179-248 28-98 (155)
256 cd03419 GRX_GRXh_1_2_like Glut 34.3 2E+02 0.0043 21.5 7.0 51 186-247 4-60 (82)
257 KOG0191 Thioredoxin/protein di 34.2 1.2E+02 0.0027 30.9 7.1 96 176-277 158-255 (383)
258 COG1999 Uncharacterized protei 33.5 2.1E+02 0.0046 26.6 8.0 38 237-275 168-205 (207)
259 PRK12570 N-acetylmuramic acid- 32.7 46 0.00099 33.0 3.5 37 13-50 234-270 (296)
260 PF00462 Glutaredoxin: Glutare 31.9 1.9E+02 0.0041 20.5 6.1 50 186-245 3-55 (60)
261 TIGR02180 GRX_euk Glutaredoxin 31.6 2E+02 0.0042 21.6 6.4 57 185-247 2-61 (84)
262 KOG0010 Ubiquitin-like protein 30.6 1.4E+02 0.0031 31.5 6.7 69 365-441 14-83 (493)
263 COG3531 Predicted protein-disu 30.5 1.1E+02 0.0023 28.6 5.1 46 227-274 162-209 (212)
264 PF03413 PepSY: Peptidase prop 30.4 2E+02 0.0043 20.4 7.6 60 168-257 3-64 (64)
265 KOG0944 Ubiquitin-specific pro 30.3 58 0.0013 35.7 3.9 40 11-52 636-675 (763)
266 PRK15317 alkyl hydroperoxide r 28.4 4.1E+02 0.0089 28.3 10.2 85 176-272 111-196 (517)
267 PF05768 DUF836: Glutaredoxin- 28.3 2.8E+02 0.006 21.3 7.1 79 184-271 2-81 (81)
268 cd03028 GRX_PICOT_like Glutare 27.7 2.8E+02 0.0062 21.7 6.8 56 180-247 7-70 (90)
269 cd03020 DsbA_DsbC_DsbG DsbA fa 27.4 3E+02 0.0066 25.0 7.9 71 193-269 119-196 (197)
270 KOG1672 ATP binding protein [P 26.4 1.1E+02 0.0024 28.5 4.5 84 168-260 73-156 (211)
271 TIGR00601 rad23 UV excision re 26.0 1.1E+02 0.0023 31.6 4.8 44 5-50 151-194 (378)
272 KOG0005 Ubiquitin-like protein 25.5 1.7E+02 0.0036 21.8 4.4 66 368-440 2-67 (70)
273 cd01760 RBD Ubiquitin-like dom 24.4 2.3E+02 0.005 21.8 5.3 44 369-413 2-45 (72)
274 cd03069 PDI_b_ERp57 PDIb famil 24.3 3.8E+02 0.0083 21.6 9.0 89 169-271 8-101 (104)
275 cd01818 TIAM1_RBD Ubiquitin do 24.1 1.7E+02 0.0037 22.9 4.5 39 371-410 4-42 (77)
276 PF02401 LYTB: LytB protein; 24.1 2.2E+02 0.0049 28.0 6.6 103 167-275 168-279 (281)
277 KOG1731 FAD-dependent sulfhydr 23.1 84 0.0018 33.9 3.5 101 166-275 46-154 (606)
278 cd04598 CBS_pair_GGDEF_assoc T 22.6 3.9E+02 0.0084 21.1 7.6 61 202-267 57-117 (119)
279 TIGR03140 AhpF alkyl hydropero 22.3 6.4E+02 0.014 26.8 10.2 88 174-273 110-198 (515)
280 PF13019 Telomere_Sde2: Telome 21.9 3.4E+02 0.0073 24.5 6.6 46 368-413 2-51 (162)
281 cd04640 CBS_pair_27 The CBS do 21.1 4.5E+02 0.0098 21.2 7.6 98 166-267 9-124 (126)
282 PTZ00381 aldehyde dehydrogenas 20.0 97 0.0021 33.0 3.4 39 154-192 340-378 (493)
No 1
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-43 Score=340.02 Aligned_cols=344 Identities=37% Similarity=0.688 Sum_probs=243.5
Q ss_pred cchHHHHHHhhcccccC-CCHHHHHHHHHHcCCCHHHHHHHHhcCCCCCCCCCCCCCCCccCCCCCCCCCCcccCCCCCC
Q 013379 7 ANDKQSMVSSFLEIAVG-QTAETAVQFLQATSWKLDEAIQLFYVGNESGAIASASRSPAEEIANPGPEENSVTAGQEIGD 85 (444)
Q Consensus 7 ~~~~~~~i~~F~~itt~-~~~~~A~~~L~~~~w~le~Av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 85 (444)
..+...+|++||+| |+ ++.+.|++||++++|||+.||++||+..+.....++ ..
T Consensus 3 ~~~~~~lv~~fl~I-t~~~t~e~A~q~L~~~~~~le~ai~Lffe~~~~~~~~s~------------------------~~ 57 (356)
T KOG1364|consen 3 TGAQRALVSKFLAI-TVQQTVEIATQYLSAADWDLEAAINLFFEHGGFTQVYSS------------------------SS 57 (356)
T ss_pred cchHHHHHHHHHHH-hccccHHHHHHHHHhcCCcHHHHHHHHHHhcccccccCC------------------------cc
Confidence 34456799999999 66 899999999999999999999999997654222110 11
Q ss_pred CCCCCCcccccccccCccccCCCCCCCCCCCCCccc-ccccchhhhcCCCcccCcCCCCCCCcchHHHHHhhcCCCccCc
Q 013379 86 EVRAPLPVVRDTLYDDAMFYAGSGARYPLHEPSSLI-AFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFHLM 164 (444)
Q Consensus 86 ~VraP~~~~~~~Lv~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~f~pp~~~~ 164 (444)
.+..|+++++++|+.+. |.+ . . .+.++. +-. +|.+. +...+...+|+++|+||+.|+
T Consensus 58 ~a~sp~~~~re~l~~~~---~~~--d--~-~~~s~~~p~~----------~~~~~----s~~~~~~srL~slfrpp~~i~ 115 (356)
T KOG1364|consen 58 AAPSPIEPQREVLFDPL---GIM--D--Q-STSSILDPSE----------NQDDE----SEHASSQSRLASLFRPPTDIL 115 (356)
T ss_pred cCCCcccccceeeeccc---ccc--c--c-CcccccCccc----------ccchh----hhhccccchhhhhcCCCcchh
Confidence 12238888899887642 100 0 0 001110 111 11111 112345678999999999999
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
+.|+|++|+..|.++.+|||| ..++.||.++..+|++...|+|+
T Consensus 116 ~~gsld~ak~~a~sk~~wllV------------------------------------~~Dtseg~~~~~Fy~~~~~P~i~ 159 (356)
T KOG1364|consen 116 SHGSLDAAKSTASSKQRWLLV------------------------------------LDDTSEGQPFSAFYHISSLPHIA 159 (356)
T ss_pred hcCChhhhhhcccccceEEEE------------------------------------eeccCCCCchhhheeccCCceEE
Confidence 999999999999999999999 45678899999999999999999
Q ss_pred EEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcCCccccccccCCCCCCCCCCccccCCCCch-hHHHHHHHHHHHhHHHh
Q 013379 245 VVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKNKDKPD-IENEELLQALAASMETI 323 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~~~~~~~~l~~~r~~~~~~~~~~~~~~~~~-~qde~~~~al~~sl~~~ 323 (444)
||||+||+.|++|.|.+.+..|+..|..|++.+++++-+.+...|++... +..-.. +|+.+++.++.+++-.-
T Consensus 160 iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~~~~d~vas~t~n~~~p~~------e~~~~ss~e~~~~elai~~sv~~~ 233 (356)
T KOG1364|consen 160 IIDPITGERVKRWSGVIEPEQFLSDLNEFIDSCPHDEVASLTRNRKRPKT------EPTCLSSEEDMQMELAIKNSVVNP 233 (356)
T ss_pred EECCchhhhhhhhccccCHHHHHHHHHHHHhcCCccccccccccccCCCC------CccccccccchhhhcccccccccC
Confidence 99999999999999999999999999999999998854444333322210 001112 46666677777666542
Q ss_pred hcccCCCCCcccccCcch---hhhhhccCCCCCCCCCCCCC--CCCCceEEEEECCCCceEEEEeCCCCchHHHHHHHHh
Q 013379 324 KDASGVSSSDTDVASTDK---DEASATEKPAYPILPEEPKV--DRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYS 398 (444)
Q Consensus 324 ~~~~~~~ee~~~~~~~e~---~e~~~~~~~~~~~lp~EP~~--~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~ 398 (444)
.-....+++- ...+++. .++... ..+.+..||.. +.+-+|+|+||||||+|.+|||..+++++.||.||.+
T Consensus 234 ~~~~e~e~~~-~s~~ee~e~~~e~~~~---~~~~a~~ep~~~~~~svvt~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s 309 (356)
T KOG1364|consen 234 SSGTEFEGQG-ASDEEELETVLEEDLF---VFPVATVEPKGDCDRSVVTSIQVRFPDGRRKQRKFLKSEPVQLLWSFCYS 309 (356)
T ss_pred CCcccccCCC-Ccccchhhcccccccc---ccceeeecCCCCCCccceeEEEEecCCccHHHHhhccccHHHHHHHHHHH
Confidence 2110100000 0000000 011111 12223233332 4456889999999999999999999999999999999
Q ss_pred hcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCc--eEEEEeC
Q 013379 399 QLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANA--MISVTWE 444 (444)
Q Consensus 399 ~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~--~v~v~~~ 444 (444)
+.++++...|+|++.||++ ++|.++.+.||+++||.|+ .+.++|+
T Consensus 310 ~~dg~~k~~FkLv~a~P~~-k~l~~~~daT~~eaGL~nS~~~~~~e~e 356 (356)
T KOG1364|consen 310 HMDGSDKKRFKLVQAIPAS-KTLDYGADATFKEAGLANSETLLSVEWE 356 (356)
T ss_pred hhcccccccceeeecccch-hhhhccccchHHHhccCccccccccccC
Confidence 9999999999999999976 6888889999999999998 5566663
No 2
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-33 Score=287.63 Aligned_cols=286 Identities=20% Similarity=0.280 Sum_probs=205.2
Q ss_pred hHHHHHhhcCCCccCcccCcHHHHHHHHHHc----CCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecC
Q 013379 149 SRDNLASLYRPPFHLMFNGSFEKAKDAASVQ----DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD 224 (444)
Q Consensus 149 ~~~~l~~~f~pp~~~~~~gs~~~A~~~A~~~----~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~ 224 (444)
..+.|.++|+.+++.||.|.+..|...|..+ .|+|++|+|++.+.++..||..||||+.|++||+++||+|++++.
T Consensus 147 f~~~f~~ry~~~~p~F~~d~l~~a~~~A~~~~~~~~~~l~~~~~~~~~~~~~~F~~~iL~~e~v~~~l~~~~llw~~dvt 226 (460)
T KOG1363|consen 147 FVDNFGDRYGSELPSFYTDVLRNAFLEAFDRESEARKLLAIYLHDDKSDDTNVFCGQILCNEAVVDYLRENFLLWGWDVT 226 (460)
T ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHhhhhhhheeeEEecCCCCcccHHHHHHhhhhhHHHHHHHhhceeeeccccc
Confidence 3466889999999999999998888888543 699999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHcCCC----------------CCcEEEEEeCCCC--eeeEEEeCCCChHHHHHHHHhhhhcCCcccccccc
Q 013379 225 TSEGKKVCTYYKLD----------------SIPVVLVVDPITG--QKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVS 286 (444)
Q Consensus 225 s~eg~~~~~~y~~~----------------~~P~l~ii~p~tg--~~v~~~~G~~~~~~~l~~L~~~l~~~~~~~~~~l~ 286 (444)
+.+++.+.+.+++. .||.+.++..... +++..++|.++.++.+..+..+++.+....
T Consensus 227 ~~e~~~~~~~~~~r~~~~~~~~~~~~~~~~~fP~~~iv~~~~~~~Ell~~l~g~~~~~e~~~~~~~~~~~~~~~~----- 301 (460)
T KOG1363|consen 227 ESENLLVFNSLLNRSISSPAAVTNKASKSERFPLVRIVIGSRSPEELLRYLQGVTGVDEEMTLLLVAFEEEERRL----- 301 (460)
T ss_pred CchhhHHHHHHhhcccchhhhhhcchhhcccCchhhhhhcCCCHHHHHHHHHhcCCchHHHHHHHhhhhhhhHHH-----
Confidence 99999999998887 4555544432111 244445555555555555554444432110
Q ss_pred CCCCCCCCCCccccCCCCchhHHHHHHHHHHHhHHHhhcccCCCCCcc----cccCcchhhhhhccCCCCCCCCCCCCCC
Q 013379 287 HKRPRGSSTTPQQKNKDKPDIENEELLQALAASMETIKDASGVSSSDT----DVASTDKDEASATEKPAYPILPEEPKVD 362 (444)
Q Consensus 287 ~~r~~~~~~~~~~~~~~~~~~qde~~~~al~~sl~~~~~~~~~~ee~~----~~~~~e~~e~~~~~~~~~~~lp~EP~~~ 362 (444)
+.+...+ ...+ ....++++||.+|++++++|..+..+++...++.+ ++++++++|...+.......+|+||.+.
T Consensus 302 q~~~~~~-~er~-~r~~~~~eQd~eyq~sle~Dr~r~~e~e~~~e~~r~e~er~~~~ee~e~~R~~l~~es~lp~EP~a~ 379 (460)
T KOG1363|consen 302 QMRRSEQ-DERE-ARLALEQEQDDEYQASLEADRVREAEAEQAAEEFRLEKERKEEEEERETARQLLALESSLPPEPSAS 379 (460)
T ss_pred hhcccch-hHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHhhhccCCCCCCcC
Confidence 1111111 0000 01125567799999999999888222111111111 1111122222223345567899999778
Q ss_pred CCCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC--ceEE
Q 013379 363 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN--AMIS 440 (444)
Q Consensus 363 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~--~~v~ 440 (444)
..++++|+||+|+|.|..|||..+++++.||+||.++ +.....|.|+++|||+.+. ......||++.||.+ .+|.
T Consensus 380 ~~~~~~l~iR~P~G~r~~RrF~~s~~~q~l~~~v~~~--~~~~~e~~~~~~fPr~~~~-~~~~~~sl~~~~l~p~qe~lf 456 (460)
T KOG1363|consen 380 EEEAITVAIRLPSGTRLERRFLKSDKLQILYDYVDSN--GFHPEEYSLNTSFPRRPLG-DYEHSSSLQDIGLTPRQETLF 456 (460)
T ss_pred cccceeeEEECCCCCeeeeeeecccchhHHHHHHHhc--cCCchhhccccCCCccccc-ccccccccccCCcccccceee
Confidence 8899999999999999999999999999999999997 4578899999999999732 244589999999985 6788
Q ss_pred EEeC
Q 013379 441 VTWE 444 (444)
Q Consensus 441 v~~~ 444 (444)
|+|.
T Consensus 457 lE~~ 460 (460)
T KOG1363|consen 457 LEEI 460 (460)
T ss_pred eecC
Confidence 8873
No 3
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.95 E-value=9.1e-27 Score=198.19 Aligned_cols=114 Identities=23% Similarity=0.413 Sum_probs=109.3
Q ss_pred cccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 164 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 164 ~~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
||+|+|++|++.||++.|+||||||++.|.+|..|||++|+|++|+++|++|||+|++|+.++||+++++.+++.+||++
T Consensus 1 ff~gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~ 80 (116)
T cd02991 1 FYQGTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFL 80 (116)
T ss_pred CCcCcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCC--eeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 244 LVVDPITG--QKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 244 ~ii~p~tg--~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
+||+|+++ +++.+++|.+++++|+..|+.+++.+
T Consensus 81 ~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~~ 116 (116)
T cd02991 81 AMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDAN 116 (116)
T ss_pred EEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 99998876 47899999999999999999998753
No 4
>smart00594 UAS UAS domain.
Probab=99.93 E-value=9.9e-26 Score=194.13 Aligned_cols=116 Identities=48% Similarity=0.744 Sum_probs=109.2
Q ss_pred hcCCCc-cCcccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHH
Q 013379 156 LYRPPF-HLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTY 234 (444)
Q Consensus 156 ~f~pp~-~~~~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~ 234 (444)
.|.||+ |.||+|+|++|++.|++++|+++||+|+++|.+|+.|||+||+|+.|+++|++|||+|++++.++||..+++.
T Consensus 2 ~~~~~~~~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~ 81 (122)
T smart00594 2 LFRPPYGPLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQF 81 (122)
T ss_pred CCCCCCCCceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHh
Confidence 466777 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEEeCCCCe----eeEEEeCCCChHHHHHHHH
Q 013379 235 YKLDSIPVVLVVDPITGQ----KMRSWCGMVQPESLLEDLV 271 (444)
Q Consensus 235 y~~~~~P~l~ii~p~tg~----~v~~~~G~~~~~~~l~~L~ 271 (444)
|++.+||+++||+|.+|+ ++.+++|.+++++|+..|.
T Consensus 82 ~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l~ 122 (122)
T smart00594 82 YKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFLE 122 (122)
T ss_pred cCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhhC
Confidence 999999999999998874 5678899999999998773
No 5
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=99.93 E-value=3.6e-25 Score=191.64 Aligned_cols=114 Identities=23% Similarity=0.297 Sum_probs=106.4
Q ss_pred cccCcHHHHHHHH----HHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChh------------
Q 013379 164 MFNGSFEKAKDAA----SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE------------ 227 (444)
Q Consensus 164 ~~~gs~~~A~~~A----~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~e------------ 227 (444)
||.|+|++|++.| +++.|+|+||||++++.+++.|||++|||+.|++||++|||+|++|+..++
T Consensus 1 F~~Gs~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~ 80 (136)
T cd02990 1 FFIGSLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRH 80 (136)
T ss_pred CccCcHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhh
Confidence 6999999999999 999999999999999999999999999999999999999999999999987
Q ss_pred ----HHHHHHHcCCCCCcEEEEEeCCCC--eeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 228 ----GKKVCTYYKLDSIPVVLVVDPITG--QKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 228 ----g~~~~~~y~~~~~P~l~ii~p~tg--~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
+.+.++.+++++||+++||.+..+ +++.+++|.+++++++++|..+++.+
T Consensus 81 ~g~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve~~ 136 (136)
T cd02990 81 FGSVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAMEMF 136 (136)
T ss_pred hhHHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 556778889999999999998765 58899999999999999999998754
No 6
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.92 E-value=1.7e-24 Score=184.13 Aligned_cols=113 Identities=48% Similarity=0.900 Sum_probs=109.9
Q ss_pred cccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 164 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 164 ~~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
||.|+|++|++.|++++||||||+|+++|..|+.|++++|+|+.|+++|++|||+|.+++++++|..++..|++..+|++
T Consensus 1 f~~gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~ 80 (114)
T cd02958 1 FFQGSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHI 80 (114)
T ss_pred CccCCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhc
Q 013379 244 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 244 ~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
+||+|++|+++.++.|.+++++|+..|..+++.
T Consensus 81 ~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 81 AIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred EEEeCccCcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence 999998999999999999999999999998764
No 7
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=99.88 E-value=2.5e-21 Score=189.97 Aligned_cols=110 Identities=21% Similarity=0.381 Sum_probs=103.5
Q ss_pred CcccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013379 163 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV 242 (444)
Q Consensus 163 ~~~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~ 242 (444)
+||+|++.+|+..||..++.++|||.+++ ..++.|+|-+|.+..|.+.+...||...+...+..+.+|+.+|++...|+
T Consensus 2 lwfkGnipeAIa~aK~kkalfVVyI~gdd-E~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs 80 (506)
T KOG2507|consen 2 LWFKGNIPEAIAEAKGKKALFVVYISGDD-EESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPS 80 (506)
T ss_pred cccccchHHHHHHhhcCCeEEEEEEecCc-hHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccc
Confidence 58999999999999999999999999985 58899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 243 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 243 l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
+++|+. +|..|.++.|++++++|...|.+++
T Consensus 81 ~ffIg~-sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 81 IFFIGF-SGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred eeeecC-CCceeEEeeccccHHHHHHHHHHHH
Confidence 999995 8999999999999999988887654
No 8
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.84 E-value=9.7e-21 Score=149.77 Aligned_cols=77 Identities=23% Similarity=0.399 Sum_probs=69.9
Q ss_pred CceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCceEEEEeC
Q 013379 365 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE 444 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v~v~~~ 444 (444)
++|+||||||||+|++|||+.+|+|++||+||.++.++....+|.|+++||+|. +.++ ++||+|+||.|++|+++|.
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~--l~~~-~~Tl~eagL~~s~v~q~~~ 79 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKE--LSDE-SLTLKEANLLNAVIVQRLK 79 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcc--cCCC-CCcHHHCCCcCcEEEEEeC
Confidence 579999999999999999999999999999999976555568999999999987 6544 9999999999999999995
No 9
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.80 E-value=2.1e-19 Score=143.94 Aligned_cols=79 Identities=19% Similarity=0.381 Sum_probs=67.7
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccC----CCCcCCChhhcCCCCceE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSL----DYDSKLTFEDSGLANAMI 439 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l----~~~~~~Tl~e~gL~~~~v 439 (444)
+++|+|+||||||+|++|||+.+++|++||+||.+. +..+..|+|+++||||.+.- ..+.++||+|+||.++.+
T Consensus 2 ~~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~--~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~ 79 (85)
T cd01774 2 PDTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL--KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEV 79 (85)
T ss_pred CceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC--CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccE
Confidence 468999999999999999999999999999999764 44668999999999997221 135789999999999988
Q ss_pred EEEeC
Q 013379 440 SVTWE 444 (444)
Q Consensus 440 ~v~~~ 444 (444)
|++++
T Consensus 80 L~V~d 84 (85)
T cd01774 80 LFVQD 84 (85)
T ss_pred EEEec
Confidence 88764
No 10
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=99.80 E-value=2.7e-19 Score=141.38 Aligned_cols=75 Identities=27% Similarity=0.510 Sum_probs=68.1
Q ss_pred ceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCC-CcCCChhhcCCCCceEEEEeC
Q 013379 366 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDY-DSKLTFEDSGLANAMISVTWE 444 (444)
Q Consensus 366 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~-~~~~Tl~e~gL~~~~v~v~~~ 444 (444)
+|+|+||||||+|++|+|+.+++|++||+||.++. ....+|.|+++|||+. +.+ +.++||+|+||.|++++|+|.
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~--~~~~~f~L~t~~Pr~~--~~~~~~~~TL~e~gL~~s~~~~~~~ 77 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNG--PPAEPFTLMTSFPRRV--LTDLDYELTLQEAGLVNEVVFQRLK 77 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcC--CCCCCEEEEeCCCCcc--CCCCCccCcHHHcCCccceEEEEeC
Confidence 79999999999999999999999999999999874 3467899999999997 443 589999999999999999995
No 11
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.80 E-value=3.2e-19 Score=140.58 Aligned_cols=77 Identities=23% Similarity=0.317 Sum_probs=67.4
Q ss_pred CCCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCceEEEE
Q 013379 363 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVT 442 (444)
Q Consensus 363 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v~v~ 442 (444)
..++|+|+||||||+|++|||+.+++|++||.||.++ ++...+|+|+++||||++. ..+.++||+|+||.|+.++++
T Consensus 2 ~~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~--g~~~~~f~L~t~FPRr~~~-~~d~~~TL~e~GL~P~~~LfV 78 (82)
T cd01773 2 NGPKARLMLRYPDGKREQIALPEQAKLLALVRHVQSK--GYPNERFELLTNFPRRKLS-HLDYDITLQEAGLCPQETVFV 78 (82)
T ss_pred CCCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc--CCCCCCEEEecCCCCcccC-CcccCCCHHHcCCCCCcEEEE
Confidence 3568999999999999999999999999999999995 6678999999999999844 356789999999997665543
No 12
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.78 E-value=8.2e-19 Score=138.96 Aligned_cols=76 Identities=22% Similarity=0.442 Sum_probs=66.0
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCce-EEEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAM-ISVT 442 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~-v~v~ 442 (444)
.++|+|+||||||+|++|||+.+++|++||+||.++ +++...|+|+++||||++. ..+.++||+|+||.++. |+|+
T Consensus 2 ~~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~--~~~~~~f~L~t~fPRk~~~-~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 2 EPISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK--GYPIDEYKLLSSWPRRDLT-QLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc--CCCCCCEEEecCCCCCCCc-CCCCCCcHHHcCCCCCcEEEEE
Confidence 468999999999999999999999999999999986 6677899999999999843 24678999999999655 5553
No 13
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=99.73 E-value=1.4e-17 Score=132.56 Aligned_cols=76 Identities=26% Similarity=0.491 Sum_probs=64.7
Q ss_pred CceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCC-CCcCCChhhcCCC-CceEEEE
Q 013379 365 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLD-YDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~-~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
+.|+|+||||||+|++|+|+.+++|++||+||.... +....+|+|+++|||+. +. .+.++||.|+||. +++|+|+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~-~~~~~~f~L~t~~Prk~--l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAAL-TDGNDPFTLNSPFPRRT--FTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcc-cCCCCCEEEEeCCCCcC--CccccccCCHHHCCCCCceEEEEe
Confidence 589999999999999999999999999999996643 44567899999999987 43 3458999999998 5667777
Q ss_pred e
Q 013379 443 W 443 (444)
Q Consensus 443 ~ 443 (444)
|
T Consensus 80 ~ 80 (80)
T smart00166 80 P 80 (80)
T ss_pred C
Confidence 6
No 14
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=99.73 E-value=1.1e-17 Score=133.72 Aligned_cols=79 Identities=38% Similarity=0.563 Sum_probs=65.7
Q ss_pred CCCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEE
Q 013379 363 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 441 (444)
Q Consensus 363 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v 441 (444)
..+.|+|+||||||++++|+|+.++||++||+||..+........|.|+++|||+. +..+.++||+|+||. +++|+|
T Consensus 3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~--l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRE--LTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEE--CCSTTTSBTCCCTTSSCEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcC--CCccccccHHHhcCCCCeEEEE
Confidence 35799999999999999999999999999999999986543333499999999987 433336999999998 577888
Q ss_pred Ee
Q 013379 442 TW 443 (444)
Q Consensus 442 ~~ 443 (444)
+|
T Consensus 81 ~~ 82 (82)
T PF00789_consen 81 EK 82 (82)
T ss_dssp E-
T ss_pred EC
Confidence 88
No 15
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.71 E-value=3.5e-17 Score=129.78 Aligned_cols=76 Identities=17% Similarity=0.319 Sum_probs=65.0
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCceEEEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVT 442 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v~v~ 442 (444)
...|+|+||||||++++++|+.+++|++||+||.++.. ...+|.|+++||||.+. ..+.++||+|+||.|++++++
T Consensus 2 ~~~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~--~~~~f~L~t~fPrk~~~-~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 2 YTETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTG--NGGPFTLMTPFPRKVFT-EDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred CcEEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCC--CCCCEEEEeCCCCeECC-cccccCCHHHCCCCCceEEEE
Confidence 35799999999999999999999999999999998642 35789999999999733 246789999999998776654
No 16
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.40 E-value=2.3e-12 Score=102.85 Aligned_cols=80 Identities=20% Similarity=0.347 Sum_probs=71.7
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~i 245 (444)
..+|++|++.|++++|||||++++++|..|+.|.+.+|.++.|.++++++||++.++.+..++...... ..+|+++|
T Consensus 3 ~~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~---~~~P~~~~ 79 (82)
T PF13899_consen 3 QSDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR---QGYPTFFF 79 (82)
T ss_dssp ESSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH---CSSSEEEE
T ss_pred hhhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC---ccCCEEEE
Confidence 468999999999999999999999999999999999999999999999999999999988776542222 44999999
Q ss_pred EeC
Q 013379 246 VDP 248 (444)
Q Consensus 246 i~p 248 (444)
++|
T Consensus 80 ldp 82 (82)
T PF13899_consen 80 LDP 82 (82)
T ss_dssp EET
T ss_pred eCC
Confidence 987
No 17
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=99.36 E-value=6.6e-13 Score=92.58 Aligned_cols=42 Identities=26% Similarity=0.706 Sum_probs=36.3
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (444)
+++|.+||+| ||+++++|++||+++||||+.||++||+.+++
T Consensus 1 ~e~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Av~~y~~~~~~ 42 (43)
T PF14555_consen 1 DEKIAQFMSI-TGADEDVAIQYLEANNWDLEAAVNAYFDDGEA 42 (43)
T ss_dssp HHHHHHHHHH-H-SSHHHHHHHHHHTTT-HHHHHHHHHHSS-S
T ss_pred CHHHHHHHHH-HCcCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 4589999999 89999999999999999999999999997654
No 18
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=99.31 E-value=2.5e-12 Score=126.98 Aligned_cols=78 Identities=22% Similarity=0.352 Sum_probs=71.8
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCceEEEEe
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTW 443 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v~v~~ 443 (444)
.++|.|||||+||+|++-+|+.++||.+||.||....++.....|.|+++||.|. | .|.+.||++|||.|++|+++|
T Consensus 303 ~PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~--l-~D~sqTle~AgL~Nsvlvqr~ 379 (380)
T KOG2086|consen 303 EPTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKP--L-SDDSQTLEEAGLLNSVLVQRL 379 (380)
T ss_pred CCcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcc--c-CCcchhHHhccchhhhhhhhc
Confidence 4689999999999999999999999999999999988887777899999999986 5 478999999999999999987
Q ss_pred C
Q 013379 444 E 444 (444)
Q Consensus 444 ~ 444 (444)
.
T Consensus 380 ~ 380 (380)
T KOG2086|consen 380 A 380 (380)
T ss_pred C
Confidence 4
No 19
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.27 E-value=1.2e-11 Score=106.61 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=77.2
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
+..+|++|++.|++++|+|||++|+++|..|+.|.+.+|.+++|+++++++||...++.+.++...- . ....+|+++
T Consensus 8 W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~--~-~g~~vPtiv 84 (130)
T cd02960 8 WVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS--P-DGQYVPRIM 84 (130)
T ss_pred chhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC--c-cCcccCeEE
Confidence 4459999999999999999999999999999999999999999999999999988777765431110 0 114699999
Q ss_pred EEeCCCCeeeEEEeCC
Q 013379 245 VVDPITGQKMRSWCGM 260 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~ 260 (444)
|+++ +|+++.++.|.
T Consensus 85 Fld~-~g~vi~~i~Gy 99 (130)
T cd02960 85 FVDP-SLTVRADITGR 99 (130)
T ss_pred EECC-CCCCccccccc
Confidence 9998 58888888874
No 20
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3e-11 Score=113.73 Aligned_cols=78 Identities=18% Similarity=0.387 Sum_probs=67.4
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCce-EEEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAM-ISVT 442 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~-v~v~ 442 (444)
...|+||||||||+.+...|+...+|..|..||+.+. +....+|.|.++|||+.|. .+|..++|+++||.+++ |++.
T Consensus 208 ys~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~-~~~~~P~~f~t~fPR~tf~-edD~~KpLq~L~L~Psa~lil~ 285 (290)
T KOG2689|consen 208 YSQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNR-GDGLDPYSFHTGFPRVTFT-EDDELKPLQELDLVPSAVLILE 285 (290)
T ss_pred ccceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhc-cCCCCCeeeecCCCceecc-cccccccHHHhccccchheecc
Confidence 4799999999999999999999999999999999874 3345699999999999865 36789999999999866 4555
Q ss_pred e
Q 013379 443 W 443 (444)
Q Consensus 443 ~ 443 (444)
|
T Consensus 286 ~ 286 (290)
T KOG2689|consen 286 P 286 (290)
T ss_pred c
Confidence 4
No 21
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.22 E-value=1.6e-10 Score=99.50 Aligned_cols=90 Identities=16% Similarity=0.218 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChh-HHH-HH----HHcCCCCCcEE
Q 013379 170 EKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE-GKK-VC----TYYKLDSIPVV 243 (444)
Q Consensus 170 ~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~e-g~~-~~----~~y~~~~~P~l 243 (444)
++|++.|++++|++||+++.++|..|+.|.+.+|.+++|.++|+++||+..+|++... -.+ +. ..|++..+|++
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEE
Confidence 5789999999999999999999999999999999999999999999999999986532 111 21 24688999999
Q ss_pred EEEeCCCCeeeEEEeCC
Q 013379 244 LVVDPITGQKMRSWCGM 260 (444)
Q Consensus 244 ~ii~p~tg~~v~~~~G~ 260 (444)
+|++| +|+.+....+.
T Consensus 85 vfl~~-~G~~~~~~~~~ 100 (124)
T cd02955 85 VFLTP-DLKPFFGGTYF 100 (124)
T ss_pred EEECC-CCCEEeeeeec
Confidence 99998 68888666544
No 22
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.19 E-value=3.7e-10 Score=97.19 Aligned_cols=108 Identities=21% Similarity=0.294 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcC-CeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCCh-----------hHHHHHHHcC
Q 013379 169 FEKAKDAASVQD-KWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS-----------EGKKVCTYYK 236 (444)
Q Consensus 169 ~~~A~~~A~~~~-K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~-----------eg~~~~~~y~ 236 (444)
+-++++.|++++ |++||++++++|..|+.+...++.++.+...++++|+++.++++.. ....++..|+
T Consensus 2 ~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~ 81 (125)
T cd02951 2 LYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR 81 (125)
T ss_pred hHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence 567899999999 9999999999999999999999999999999998999999988754 3467889999
Q ss_pred CCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhc
Q 013379 237 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 237 ~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
+..+|+++|+++..|+++.++.|..+.+.|...|..+++.
T Consensus 82 v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 82 VRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred CccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 9999999999984378999999999999988888877653
No 23
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.05 E-value=1.9e-09 Score=89.64 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=87.3
Q ss_pred HHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCCh--hHHHHHHHcCCCCCcEEEEEeC
Q 013379 171 KAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS--EGKKVCTYYKLDSIPVVLVVDP 248 (444)
Q Consensus 171 ~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~--eg~~~~~~y~~~~~P~l~ii~p 248 (444)
+++..|.+++|++||+++.++|..|+.|...++.++.+.+.+++++++..++++.. ....+++.|++..+|+++|+++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 56777889999999999999999999998888888999999988999999887543 2568899999999999999987
Q ss_pred CCCeeeEEEeCCCChHHHHHHH
Q 013379 249 ITGQKMRSWCGMVQPESLLEDL 270 (444)
Q Consensus 249 ~tg~~v~~~~G~~~~~~~l~~L 270 (444)
-+|+.+.++.|..+.++|...|
T Consensus 82 ~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCcccccccCHHHHHHHh
Confidence 4578888899999999887765
No 24
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.83 E-value=1.9e-08 Score=89.94 Aligned_cols=107 Identities=16% Similarity=0.251 Sum_probs=70.3
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHH--------cC
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTY--------YK 236 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~--------y~ 236 (444)
...-.++|++.|++++|+|||.|..++|.-|++|.++++.|++|.++||++||...+|.+.... +... .+
T Consensus 22 W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pd--id~~y~~~~~~~~~ 99 (163)
T PF03190_consen 22 WQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPD--IDKIYMNAVQAMSG 99 (163)
T ss_dssp -B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HH--HHHHHHHHHHHHHS
T ss_pred cccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCcc--HHHHHHHHHHHhcC
Confidence 5555679999999999999999999999999999999999999999999999999988766322 2222 26
Q ss_pred CCCCcEEEEEeCCCCeeeEEEeCCCCh------HHHHHHHHhhhh
Q 013379 237 LDSIPVVLVVDPITGQKMRSWCGMVQP------ESLLEDLVPFMD 275 (444)
Q Consensus 237 ~~~~P~l~ii~p~tg~~v~~~~G~~~~------~~~l~~L~~~l~ 275 (444)
...+|..++++| .|+.+..- ++..+ ..|+..|..+-+
T Consensus 100 ~gGwPl~vfltP-dg~p~~~~-tY~P~~~~~g~~~f~~~l~~i~~ 142 (163)
T PF03190_consen 100 SGGWPLTVFLTP-DGKPFFGG-TYFPPEDRYGRPGFLQLLERIAE 142 (163)
T ss_dssp ---SSEEEEE-T-TS-EEEEE-SS--SS-BTTB--HHHHHHHHHH
T ss_pred CCCCCceEEECC-CCCeeeee-eecCCCCCCCCccHHHHHHHHHH
Confidence 789999999999 67766442 23333 255555554433
No 25
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.81 E-value=5.4e-09 Score=87.80 Aligned_cols=94 Identities=21% Similarity=0.320 Sum_probs=77.5
Q ss_pred HHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChh------------------HHHHHHHcCC
Q 013379 176 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE------------------GKKVCTYYKL 237 (444)
Q Consensus 176 A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~e------------------g~~~~~~y~~ 237 (444)
|+.++|+++|++++++|..|+.+...++.+..+...+++++.++.++..... ...++..|++
T Consensus 1 ~~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 1 AKGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp EETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 4678999999999999999999999999999999999988988888887644 2458889999
Q ss_pred CCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHH
Q 013379 238 DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 270 (444)
Q Consensus 238 ~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L 270 (444)
..+|+++++++ .|+++.++.|..++++|++.|
T Consensus 81 ~gtPt~~~~d~-~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDK-DGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTT-TSCEEEEEESS--HHHHHHHH
T ss_pred CccCEEEEEcC-CCCEEEEecCCCCHHHHHhhC
Confidence 99999999995 699899999999999998876
No 26
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=7.5e-08 Score=84.00 Aligned_cols=106 Identities=19% Similarity=0.264 Sum_probs=92.9
Q ss_pred HHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhH--------------HHHHHH
Q 013379 169 FEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------KKVCTY 234 (444)
Q Consensus 169 ~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg--------------~~~~~~ 234 (444)
.-++...|.-++|.||+-+.++.|..|..|.+++...+.+++++..||.++-++....+- ..+++.
T Consensus 31 ~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~k 110 (182)
T COG2143 31 VFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQK 110 (182)
T ss_pred hHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHH
Confidence 456667788889999999999999999999999999999999999999999987755322 468999
Q ss_pred cCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 235 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 235 y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
|+++++|++.+.|. +|+.+..+-|+++|+.|+..|.-+-+
T Consensus 111 f~vrstPtfvFfdk-~Gk~Il~lPGY~ppe~Fl~vlkYVa~ 150 (182)
T COG2143 111 FAVRSTPTFVFFDK-TGKTILELPGYMPPEQFLAVLKYVAD 150 (182)
T ss_pred hccccCceEEEEcC-CCCEEEecCCCCCHHHHHHHHHHHHH
Confidence 99999999999995 89999999999999999998875533
No 27
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.65 E-value=1.8e-07 Score=100.67 Aligned_cols=105 Identities=16% Similarity=0.277 Sum_probs=92.8
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCC--hhHHHHHHHcCCCCCcEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--SEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s--~eg~~~~~~y~~~~~P~l~ 244 (444)
.+|+++++.|+.++|+++|+++.++|..|+.+.+.++.+++|.+.++ +|++.++|++. .+...+++.|++..+|++.
T Consensus 461 ~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~ 539 (571)
T PRK00293 461 AELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTIL 539 (571)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEEE
Confidence 46889999999999999999999999999999999999999999986 68999999865 3557899999999999999
Q ss_pred EEeCCCCee--eEEEeCCCChHHHHHHHHhh
Q 013379 245 VVDPITGQK--MRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 245 ii~p~tg~~--v~~~~G~~~~~~~l~~L~~~ 273 (444)
++++ +|+. ..++.|..++++|.+.|.+.
T Consensus 540 ~~~~-~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 540 FFDA-QGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred EECC-CCCCcccccccCCCCHHHHHHHHHHh
Confidence 9986 5765 46788999999999888764
No 28
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.62 E-value=1.1e-07 Score=81.09 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=77.2
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCC--CcEEEE
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDS--IPVVLV 245 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~--~P~l~i 245 (444)
+|++|++.|+.++|++||+++.++|..|+.|...+...+.+.. ++.+||...++.+.. .....|++.. +|+++|
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~---~~~~~~~~~g~~vPt~~f 82 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEE---PKDEEFSPDGGYIPRILF 82 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCC---chhhhcccCCCccceEEE
Confidence 7999999999999999999999999999999998777666655 577899886554331 1234677754 999999
Q ss_pred EeCCCCeeeEEE---eCCCChHHHHHHHHhhh
Q 013379 246 VDPITGQKMRSW---CGMVQPESLLEDLVPFM 274 (444)
Q Consensus 246 i~p~tg~~v~~~---~G~~~~~~~l~~L~~~l 274 (444)
+++ +|+++.++ -|+.+...|...|...+
T Consensus 83 ~~~-~Gk~~~~~~~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 83 LDP-SGDVHPEIINKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred ECC-CCCCchhhccCCCCccccccCCCHHHHH
Confidence 998 68877644 35556666655555443
No 29
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.53 E-value=1.7e-06 Score=76.42 Aligned_cols=101 Identities=19% Similarity=0.228 Sum_probs=79.2
Q ss_pred HHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCee
Q 013379 174 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 253 (444)
Q Consensus 174 ~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~ 253 (444)
..|...+|+++|+++.++|..|..+...+- .+.+-....+-|+.++++..+...++..|++..+|+++|+++ +|++
T Consensus 14 ~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~---~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~-~G~~ 89 (142)
T cd02950 14 EVALSNGKPTLVEFYADWCTVCQEMAPDVA---KLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDR-EGNE 89 (142)
T ss_pred HHHHhCCCEEEEEEECCcCHHHHHhHHHHH---HHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECC-CCCE
Confidence 445678999999999999999998854321 233333345556666777666667889999999999999986 6999
Q ss_pred eEEEeCCCChHHHHHHHHhhhhcCC
Q 013379 254 MRSWCGMVQPESLLEDLVPFMDGGP 278 (444)
Q Consensus 254 v~~~~G~~~~~~~l~~L~~~l~~~~ 278 (444)
+.++.|..+.++|...|...+...+
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~~~~ 114 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVAGEP 114 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 9999999999999999988887554
No 30
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.15 E-value=4e-05 Score=62.25 Aligned_cols=94 Identities=17% Similarity=0.278 Sum_probs=71.0
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEe
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~ 247 (444)
+|++.+.. ..++++||+++.++|..|..+...+ ..+...+...+.+..++.+. ...+++.|++..+|+++|+.
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~ 74 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLL---ERLAEEYQGQFVLAKVNCDA--QPQIAQQFGVQALPTVYLFA 74 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhCCcEEEEEEeccC--CHHHHHHcCCCCCCEEEEEe
Confidence 34444442 3588999999999999999986432 34444445567777766654 45789999999999999997
Q ss_pred CCCCeeeEEEeCCCChHHHHHHH
Q 013379 248 PITGQKMRSWCGMVQPESLLEDL 270 (444)
Q Consensus 248 p~tg~~v~~~~G~~~~~~~l~~L 270 (444)
.|+.+.+..|..+.+++...|
T Consensus 75 --~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 75 --AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred --CCEEeeeecCCCCHHHHHHHh
Confidence 688888899988888776654
No 31
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.10 E-value=4e-05 Score=62.94 Aligned_cols=90 Identities=12% Similarity=0.131 Sum_probs=69.4
Q ss_pred HHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCe
Q 013379 175 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 252 (444)
Q Consensus 175 ~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~ 252 (444)
.+.+++++++|++++++|..|..+...+ ..+.+.+. ..+++..++.+..+...++..|++..+|++.++. .|+
T Consensus 12 ~~~~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~--~g~ 86 (104)
T cd02997 12 KFLKKEKHVLVMFYAPWCGHCKKMKPEF---TKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFE--NGK 86 (104)
T ss_pred HHHhhCCCEEEEEECCCCHHHHHhCHHH---HHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEe--CCC
Confidence 3345677999999999999999986543 24444444 5678887888766577889999999999987775 578
Q ss_pred eeEEEeCCCChHHHHHH
Q 013379 253 KMRSWCGMVQPESLLED 269 (444)
Q Consensus 253 ~v~~~~G~~~~~~~l~~ 269 (444)
++..+.|..+++.++..
T Consensus 87 ~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 87 FVEKYEGERTAEDIIEF 103 (104)
T ss_pred eeEEeCCCCCHHHHHhh
Confidence 88889998888877653
No 32
>PRK10996 thioredoxin 2; Provisional
Probab=98.09 E-value=7.7e-05 Score=65.52 Aligned_cols=91 Identities=15% Similarity=0.203 Sum_probs=72.2
Q ss_pred HHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeE
Q 013379 176 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR 255 (444)
Q Consensus 176 A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~ 255 (444)
+.+++|+++|+++.++|..|+.+.. +| ..+.+-...++.+..++.+.. ..++..|++..+|+++|+. +|+++.
T Consensus 48 ~i~~~k~vvv~F~a~wC~~C~~~~~-~l--~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~V~~~Ptlii~~--~G~~v~ 120 (139)
T PRK10996 48 LLQDDLPVVIDFWAPWCGPCRNFAP-IF--EDVAAERSGKVRFVKVNTEAE--RELSARFRIRSIPTIMIFK--NGQVVD 120 (139)
T ss_pred HHhCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhCCCeEEEEEeCCCC--HHHHHhcCCCccCEEEEEE--CCEEEE
Confidence 4466899999999999999999854 33 334445556788887777553 4688999999999998885 799999
Q ss_pred EEeCCCChHHHHHHHHhh
Q 013379 256 SWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 256 ~~~G~~~~~~~l~~L~~~ 273 (444)
++.|..+.+.|...|.+.
T Consensus 121 ~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 121 MLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEcCCCCHHHHHHHHHHh
Confidence 999998888888877654
No 33
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.07 E-value=9.9e-05 Score=60.36 Aligned_cols=86 Identities=14% Similarity=0.122 Sum_probs=69.3
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEE
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW 257 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~ 257 (444)
+.+|+++|++.+++|..|..+...+ +++.+-++.++.++.++.+.. ..++..|++..+|+++|+. .|+++..+
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~~~v~~~~id~d~~--~~l~~~~~v~~vPt~~i~~--~g~~v~~~ 83 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPIL---NKVIDEFDGAVHFVEIDIDED--QEIAEAAGIMGTPTVQFFK--DKELVKEI 83 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCCC--HHHHHHCCCeeccEEEEEE--CCeEEEEE
Confidence 4889999999999999999986543 455555666788887777643 3578899999999999996 58999999
Q ss_pred eCCCChHHHHHHH
Q 013379 258 CGMVQPESLLEDL 270 (444)
Q Consensus 258 ~G~~~~~~~l~~L 270 (444)
.|..+.++|.+.|
T Consensus 84 ~g~~~~~~~~~~l 96 (97)
T cd02949 84 SGVKMKSEYREFI 96 (97)
T ss_pred eCCccHHHHHHhh
Confidence 9988888877655
No 34
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.06 E-value=8.2e-05 Score=60.69 Aligned_cols=96 Identities=24% Similarity=0.363 Sum_probs=74.2
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii 246 (444)
-+|++.+.. .+++++|+++.++|..|+.+...+ ..+.+....++.++.++.+ +...+++.|++..+|++.++
T Consensus 7 ~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 7 ENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPIL---EKLAKEYKDNVKFAKVDCD--ENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp TTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHH---HHHHHHTTTTSEEEEEETT--TSHHHHHHTTCSSSSEEEEE
T ss_pred HHHHHHHHc---cCCCEEEEEeCCCCCcccccccee---cccccccccccccchhhhh--ccchhhhccCCCCCCEEEEE
Confidence 455665554 579999999999999999984221 2233333457888876665 55789999999999999999
Q ss_pred eCCCCeeeEEEeCCCChHHHHHHHHh
Q 013379 247 DPITGQKMRSWCGMVQPESLLEDLVP 272 (444)
Q Consensus 247 ~p~tg~~v~~~~G~~~~~~~l~~L~~ 272 (444)
. .|+.+.++.|..+++.+.+.|.+
T Consensus 79 ~--~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 79 K--NGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp E--TTEEEEEEESSSSHHHHHHHHHH
T ss_pred E--CCcEEEEEECCCCHHHHHHHHHc
Confidence 7 58888899999999998887754
No 35
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=4.7e-05 Score=66.87 Aligned_cols=104 Identities=23% Similarity=0.334 Sum_probs=84.4
Q ss_pred cCcccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh---cCEEEEEeecCChhHHHHHHHcCCC
Q 013379 162 HLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLD 238 (444)
Q Consensus 162 ~~~~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~---~~fV~w~~~~~s~eg~~~~~~y~~~ 238 (444)
.++-.-+..+-...-.+..+|+||.+|.+||-.|..+. |.+-++.. +.|-|+.++. .+--.++..|++.
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~------P~l~~~~~~~~g~~k~~kvdt--D~~~ela~~Y~I~ 114 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLG------PILEELVSEYAGKFKLYKVDT--DEHPELAEDYEIS 114 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhh------HHHHHHHHhhcCeEEEEEEcc--ccccchHhhccee
Confidence 34445577777788889999999999999999999984 44444444 5788986554 4567799999999
Q ss_pred CCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 239 SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 239 ~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
.+|+++++. +|+.+.++.|..+.+.+...|.+++.
T Consensus 115 avPtvlvfk--nGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 115 AVPTVLVFK--NGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eeeEEEEEE--CCEEeeeecccCCHHHHHHHHHHHhc
Confidence 999999998 79999999999999888888887764
No 36
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.05 E-value=7.5e-05 Score=61.96 Aligned_cols=93 Identities=17% Similarity=0.333 Sum_probs=69.5
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCCh-hHHHHHHHcCCCCCcEEE
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTS-EGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~-eg~~~~~~y~~~~~P~l~ 244 (444)
.|++++..+ .+|++||+++.++|..|..+. +.+.++-+ .++.|..++.+.. +...+++.|++..+|++.
T Consensus 5 ~~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~------p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~ 76 (103)
T cd02985 5 ELDEALKKA--KGRLVVLEFALKHSGPSVKIY------PTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFL 76 (103)
T ss_pred HHHHHHHHc--CCCEEEEEEECCCCHhHHHHh------HHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEE
Confidence 455555433 489999999999999999884 44544443 3678888887654 346799999999999988
Q ss_pred EEeCCCCeeeEEEeCCCChHHHHHHHH
Q 013379 245 VVDPITGQKMRSWCGMVQPESLLEDLV 271 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~~~~~~~l~~L~ 271 (444)
|+ +.|+++.++.| ..+.++...+.
T Consensus 77 ~~--~~G~~v~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 77 FY--KDGEKIHEEEG-IGPDELIGDVL 100 (103)
T ss_pred EE--eCCeEEEEEeC-CCHHHHHHHHH
Confidence 77 37999999999 45666666554
No 37
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.90 E-value=0.00022 Score=59.99 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=72.2
Q ss_pred ccCcHHHHHHHHH--HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCChhHHHHHHHcCCCCCc
Q 013379 165 FNGSFEKAKDAAS--VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIP 241 (444)
Q Consensus 165 ~~gs~~~A~~~A~--~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~eg~~~~~~y~~~~~P 241 (444)
|.-+.++..+.+. ..++++||++++++|..|..+...+ . ++.+-++. ++.+..++.+. ...++..|++.++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~-~--~l~~~~~~~~v~~~~vd~d~--~~~l~~~~~V~~~P 81 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVW-K--EVIQELEPLGVGIATVNAGH--ERRLARKLGAHSVP 81 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHH-H--HHHHHHHhcCceEEEEeccc--cHHHHHHcCCccCC
Confidence 3344455544443 4789999999999999999886432 1 34444443 57777766654 34678999999999
Q ss_pred EEEEEeCCCCeeeEEEeCCCChHHHHHHHH
Q 013379 242 VVLVVDPITGQKMRSWCGMVQPESLLEDLV 271 (444)
Q Consensus 242 ~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~ 271 (444)
+++|+. .|+.+....|..+.+.+...|.
T Consensus 82 t~~i~~--~g~~~~~~~G~~~~~~l~~~i~ 109 (111)
T cd02963 82 AIVGII--NGQVTFYHDSSFTKQHVVDFVR 109 (111)
T ss_pred EEEEEE--CCEEEEEecCCCCHHHHHHHHh
Confidence 999995 6888888899888877766654
No 38
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.89 E-value=6.3e-05 Score=79.13 Aligned_cols=101 Identities=14% Similarity=0.183 Sum_probs=85.2
Q ss_pred HHHHHHHHcCC--eEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCC--hhHHHHHHHcCCCCCcEEEEE
Q 013379 171 KAKDAASVQDK--WLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--SEGKKVCTYYKLDSIPVVLVV 246 (444)
Q Consensus 171 ~A~~~A~~~~K--~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s--~eg~~~~~~y~~~~~P~l~ii 246 (444)
..++.+..++| |++|+++.++|..|+.+.+.+++++.|..-+. ++|+.+.|+.. ++-..+...|++-..|.+.+.
T Consensus 463 ~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff 541 (569)
T COG4232 463 AELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGVPTYLFF 541 (569)
T ss_pred HHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 36666666666 99999999999999999999999888877666 89999999854 555678899999999999999
Q ss_pred eCCCCeeeEEEeCCCChHHHHHHHHhh
Q 013379 247 DPITGQKMRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 247 ~p~tg~~v~~~~G~~~~~~~l~~L~~~ 273 (444)
++...+... +.|.++.+.|++.|+++
T Consensus 542 ~~~g~e~~~-l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 542 GPQGSEPEI-LTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCCCcCcC-CcceecHHHHHHHHHHh
Confidence 986555444 88999999999998765
No 39
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.88 E-value=0.00014 Score=60.90 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=69.4
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCChhHHHHHH-HcCCCCCcEEEE
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCT-YYKLDSIPVVLV 245 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~eg~~~~~-~y~~~~~P~l~i 245 (444)
+|+ ++..+++.+|++||+++.++|..|+.+... | ..+.+.++. ++.+..++.+.. ...++. .|++..||++.+
T Consensus 10 ~~~-~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~-~--~~la~~~~~~~~~~~~vd~d~~-~~~~~~~~~~v~~~Pti~~ 84 (109)
T cd02993 10 EIE-ALAKGERRNQSTLVVLYAPWCPFCQAMEAS-Y--EELAEKLAGSNVKVAKFNADGE-QREFAKEELQLKSFPTILF 84 (109)
T ss_pred HHH-HHHhhhhcCCCEEEEEECCCCHHHHHHhHH-H--HHHHHHhccCCeEEEEEECCcc-chhhHHhhcCCCcCCEEEE
Confidence 444 566667889999999999999999999654 4 346666665 588888887653 344564 699999999999
Q ss_pred EeCCCCeeeEEEeCC-CChHHHHH
Q 013379 246 VDPITGQKMRSWCGM-VQPESLLE 268 (444)
Q Consensus 246 i~p~tg~~v~~~~G~-~~~~~~l~ 268 (444)
+.+. +..+....|. .+.+.++.
T Consensus 85 f~~~-~~~~~~y~g~~~~~~~l~~ 107 (109)
T cd02993 85 FPKN-SRQPIKYPSEQRDVDSLLM 107 (109)
T ss_pred EcCC-CCCceeccCCCCCHHHHHh
Confidence 9763 3345567774 57777654
No 40
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.86 E-value=0.00037 Score=57.59 Aligned_cols=87 Identities=11% Similarity=0.093 Sum_probs=64.2
Q ss_pred HHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeee
Q 013379 176 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 254 (444)
Q Consensus 176 A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v 254 (444)
+.+.+++++|+++.++|..|..+... + ..+.+-... ...|..++.+. ...++.|++..+|+++++. .|+.+
T Consensus 13 ~i~~~~~vvv~F~a~wC~~Ck~~~p~-l--~~~~~~~~~~~~~~~~vd~d~---~~~~~~~~v~~~Pt~~~~~--~g~~~ 84 (102)
T cd02948 13 LLSNKGLTVVDVYQEWCGPCKAVVSL-F--KKIKNELGDDLLHFATAEADT---IDTLKRYRGKCEPTFLFYK--NGELV 84 (102)
T ss_pred HHccCCeEEEEEECCcCHhHHHHhHH-H--HHHHHHcCCCcEEEEEEeCCC---HHHHHHcCCCcCcEEEEEE--CCEEE
Confidence 34579999999999999999998542 2 233333333 34566667663 3578999999999988885 79999
Q ss_pred EEEeCCCChHHHHHHHH
Q 013379 255 RSWCGMVQPESLLEDLV 271 (444)
Q Consensus 255 ~~~~G~~~~~~~l~~L~ 271 (444)
.++.|. +++.+.+.|.
T Consensus 85 ~~~~G~-~~~~~~~~i~ 100 (102)
T cd02948 85 AVIRGA-NAPLLNKTIT 100 (102)
T ss_pred EEEecC-ChHHHHHHHh
Confidence 999994 7777776664
No 41
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.81 E-value=0.00051 Score=55.64 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=68.1
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEE
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW 257 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~ 257 (444)
..++.++|++++++|..|..+...+ ..+.+-++.++.++.++.+.. ..+++.|++..+|+++++. .|+.+...
T Consensus 12 ~~~~~vvi~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~P~~~~~~--~g~~~~~~ 84 (101)
T TIGR01068 12 SSDKPVLVDFWAPWCGPCKMIAPIL---EELAKEYEGKVKFVKLNVDEN--PDIAAKYGIRSIPTLLLFK--NGKEVDRS 84 (101)
T ss_pred hcCCcEEEEEECCCCHHHHHhCHHH---HHHHHHhcCCeEEEEEECCCC--HHHHHHcCCCcCCEEEEEe--CCcEeeee
Confidence 4578999999999999999885432 244434455688887777654 3568899999999999995 68888888
Q ss_pred eCCCChHHHHHHHHhh
Q 013379 258 CGMVQPESLLEDLVPF 273 (444)
Q Consensus 258 ~G~~~~~~~l~~L~~~ 273 (444)
.|..+.+++...|.+.
T Consensus 85 ~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 85 VGALPKAALKQLINKN 100 (101)
T ss_pred cCCCCHHHHHHHHHhh
Confidence 8988888887777654
No 42
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.78 E-value=0.00028 Score=57.26 Aligned_cols=92 Identities=14% Similarity=0.327 Sum_probs=66.6
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEe
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~ 247 (444)
+|++++..+. +|+++|+++.++|..|..+... | +.+..-+..++.++.++.+ +...++..|++..+|+++++.
T Consensus 4 ~~~~~~~~~~--~~~v~v~f~~~~C~~C~~~~~~-l--~~l~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~ 76 (97)
T cd02984 4 EFEELLKSDA--SKLLVLHFWAPWAEPCKQMNQV-F--EELAKEAFPSVLFLSIEAE--ELPEISEKFEITAVPTFVFFR 76 (97)
T ss_pred HHHHHHhhCC--CCEEEEEEECCCCHHHHHHhHH-H--HHHHHHhCCceEEEEEccc--cCHHHHHhcCCccccEEEEEE
Confidence 4566665554 7999999999999999998542 2 2233333447888877664 345678999999999999996
Q ss_pred CCCCeeeEEEeCCCChHHHHHH
Q 013379 248 PITGQKMRSWCGMVQPESLLED 269 (444)
Q Consensus 248 p~tg~~v~~~~G~~~~~~~l~~ 269 (444)
.|+.+.++.|. .++.+.+.
T Consensus 77 --~g~~~~~~~g~-~~~~l~~~ 95 (97)
T cd02984 77 --NGTIVDRVSGA-DPKELAKK 95 (97)
T ss_pred --CCEEEEEEeCC-CHHHHHHh
Confidence 68889999885 45555544
No 43
>PHA02278 thioredoxin-like protein
Probab=97.75 E-value=0.00055 Score=57.00 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=63.2
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCChh--HHHHHHHcCCCCCcEEEEEeCCCCe
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSE--GKKVCTYYKLDSIPVVLVVDPITGQ 252 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s~e--g~~~~~~y~~~~~P~l~ii~p~tg~ 252 (444)
+++++++|+++.++|..|..+. |.+.++-.+ ..-++.++++..+ ...++..|++.+.|+++++. +|+
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~------p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk--~G~ 83 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILK------SVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK--DGQ 83 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHH------HHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEE--CCE
Confidence 5899999999999999999984 334443322 2335666766432 35589999999999999997 699
Q ss_pred eeEEEeCCCChHHHHH
Q 013379 253 KMRSWCGMVQPESLLE 268 (444)
Q Consensus 253 ~v~~~~G~~~~~~~l~ 268 (444)
.+.++.|..+++.+.+
T Consensus 84 ~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 84 LVKKYEDQVTPMQLQE 99 (103)
T ss_pred EEEEEeCCCCHHHHHh
Confidence 9999999888776544
No 44
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.72 E-value=0.00031 Score=63.90 Aligned_cols=92 Identities=16% Similarity=0.145 Sum_probs=71.2
Q ss_pred HHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChh--HH-------------------HHHHHc
Q 013379 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE--GK-------------------KVCTYY 235 (444)
Q Consensus 177 ~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~e--g~-------------------~~~~~y 235 (444)
...+|+++||+..++|..|..+. +.+.++.+.++.+++++.+... .. .++..|
T Consensus 60 ~~~gk~vll~F~a~wC~~C~~~~------p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~ 133 (173)
T TIGR00385 60 FIQGKPVLLNVWASWCPPCRAEH------PYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDL 133 (173)
T ss_pred hcCCCEEEEEEECCcCHHHHHHH------HHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhc
Confidence 34689999999999999999863 4556666667777777764321 11 234567
Q ss_pred CCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 236 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 236 ~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
++..+|+.++|++ +|+++.++.|..+.+++.+.|.+++.
T Consensus 134 ~v~~~P~~~~id~-~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 134 GVYGAPETFLVDG-NGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CCeeCCeEEEEcC-CceEEEEEeccCCHHHHHHHHHHHhh
Confidence 7788999999997 69999999999999999999888764
No 45
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.72 E-value=0.00034 Score=58.07 Aligned_cols=99 Identities=14% Similarity=0.219 Sum_probs=71.4
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~i 245 (444)
..+|++.+. +.++++||++++++|..|+.+... | ..+.+-++..+.+..++.+..+...++..|++..+|++.|
T Consensus 7 ~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~-~--~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 7 PKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPE-Y--AKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred hhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChH-H--HHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 345666654 568999999999999999988532 1 1344444556677777877766678999999999999999
Q ss_pred EeCCC---CeeeEEEeCCCChHHHHHHH
Q 013379 246 VDPIT---GQKMRSWCGMVQPESLLEDL 270 (444)
Q Consensus 246 i~p~t---g~~v~~~~G~~~~~~~l~~L 270 (444)
+.+.. +.......|..+.+++...|
T Consensus 81 ~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 81 FRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EeCCCcccccccccccCccCHHHHHHHh
Confidence 98642 13455677888877776544
No 46
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.67 E-value=0.00053 Score=55.77 Aligned_cols=94 Identities=13% Similarity=0.212 Sum_probs=68.1
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~i 245 (444)
+|++++ .++++++|++++++|..|+.+- ..| +.+.+.+.. ++.+.. ++..+...++..|++..+|.+++
T Consensus 5 ~~~~~~----~~~~~~~i~f~~~~C~~c~~~~-~~~--~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 5 NFDDIV----LSNKDVLVEFYAPWCGHCKNLA-PEY--EKLAKELKGDPDIVLAK--VDATAEKDLASRFGVSGFPTIKF 75 (102)
T ss_pred hHHHHh----ccCCcEEEEEECCCCHHHHhhC-hHH--HHHHHHhccCCceEEEE--EEccchHHHHHhCCCCcCCEEEE
Confidence 455554 3799999999999999999883 333 334555554 465554 44455678889999999999999
Q ss_pred EeCCCCeeeEEEeCCCChHHHHHHHHh
Q 013379 246 VDPITGQKMRSWCGMVQPESLLEDLVP 272 (444)
Q Consensus 246 i~p~tg~~v~~~~G~~~~~~~l~~L~~ 272 (444)
+++ ++. +....|..+.+.|...|.+
T Consensus 76 ~~~-~~~-~~~~~g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 76 FPK-GKK-PVDYEGGRDLEAIVEFVNE 100 (102)
T ss_pred ecC-CCc-ceeecCCCCHHHHHHHHHh
Confidence 985 333 6678898888887776654
No 47
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.67 E-value=0.0006 Score=53.58 Aligned_cols=86 Identities=19% Similarity=0.189 Sum_probs=65.4
Q ss_pred HHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCe
Q 013379 175 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 252 (444)
Q Consensus 175 ~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~ 252 (444)
.+..+.+++||++.+++|..|..+.. .+.++.+ .++.+..++.+. ...++..|++..+|+++++. .|+
T Consensus 5 ~~~~~~~~~ll~~~~~~C~~C~~~~~------~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~--~g~ 74 (93)
T cd02947 5 ELIKSAKPVVVDFWAPWCGPCKAIAP------VLEELAEEYPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFK--NGK 74 (93)
T ss_pred HHHhcCCcEEEEEECCCChhHHHhhH------HHHHHHHHCCCceEEEEECCC--ChhHHHhcCcccccEEEEEE--CCE
Confidence 33444499999999999999998753 3444443 677787767655 45678899999999999996 588
Q ss_pred eeEEEeCCCChHHHHHHH
Q 013379 253 KMRSWCGMVQPESLLEDL 270 (444)
Q Consensus 253 ~v~~~~G~~~~~~~l~~L 270 (444)
.+..+.|..+.+.+...|
T Consensus 75 ~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 75 EVDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEEecCCCHHHHHHHh
Confidence 888899988877776654
No 48
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.66 E-value=0.00054 Score=55.07 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=68.0
Q ss_pred HHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHH--hcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCC
Q 013379 172 AKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI--STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI 249 (444)
Q Consensus 172 A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l--~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~ 249 (444)
.+..+.+++++++|++.+++|..|..+... | ..+.+.+ +.++.+..++.+. ...++..|++..+|+++++.+.
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPE-Y--EKLAKELKGDGKVVVAKVDCTA--NNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHH-H--HHHHHHhccCCceEEEEeeccc--hHHHHHhCCCCCCCEEEEEcCC
Confidence 344556666799999999999999998543 3 3445556 4677777666554 5678999999999999999863
Q ss_pred CCeeeEEEeCCCChHHHHHH
Q 013379 250 TGQKMRSWCGMVQPESLLED 269 (444)
Q Consensus 250 tg~~v~~~~G~~~~~~~l~~ 269 (444)
|..+.+..|..+++++.+.
T Consensus 82 -~~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 82 -SKEPVKYEGPRTLESLVEF 100 (101)
T ss_pred -CcccccCCCCcCHHHHHhh
Confidence 3566677787788777653
No 49
>PRK09381 trxA thioredoxin; Provisional
Probab=97.63 E-value=0.0012 Score=54.94 Aligned_cols=90 Identities=16% Similarity=0.181 Sum_probs=66.3
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEE
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW 257 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~ 257 (444)
+.+++++|++++++|..|..+...+ +.+.+-...++.+..++.+.. ..++..|++.++|+++|+. .|+.+.+.
T Consensus 19 ~~~~~vvv~f~~~~C~~C~~~~p~~---~~l~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~--~G~~~~~~ 91 (109)
T PRK09381 19 KADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLLLFK--NGEVAATK 91 (109)
T ss_pred cCCCeEEEEEECCCCHHHHHHhHHH---HHHHHHhCCCcEEEEEECCCC--hhHHHhCCCCcCCEEEEEe--CCeEEEEe
Confidence 4588999999999999999884221 123333345566776676554 3467889999999999995 68888889
Q ss_pred eCCCChHHHHHHHHhhh
Q 013379 258 CGMVQPESLLEDLVPFM 274 (444)
Q Consensus 258 ~G~~~~~~~l~~L~~~l 274 (444)
.|..+.+++...|...+
T Consensus 92 ~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 92 VGALSKGQLKEFLDANL 108 (109)
T ss_pred cCCCCHHHHHHHHHHhc
Confidence 99888887776666543
No 50
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.60 E-value=0.0009 Score=56.69 Aligned_cols=96 Identities=15% Similarity=0.190 Sum_probs=71.1
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHH-HHcCCCCCcEE
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVC-TYYKLDSIPVV 243 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~-~~y~~~~~P~l 243 (444)
-..+|+++... .++++++||.++.++|..|+.|...+ +++.+.+++...|.++|.+... .++ ..|++.+||++
T Consensus 15 ~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~---~~la~~~~~~v~~~~Vd~d~~~--~l~~~~~~I~~~PTl 88 (113)
T cd03006 15 YKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEF---EQVAQKLSDQVLFVAINCWWPQ--GKCRKQKHFFYFPVI 88 (113)
T ss_pred chhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEECCCCh--HHHHHhcCCcccCEE
Confidence 35577776553 67889999999999999999985311 2444445567777877776443 456 58999999999
Q ss_pred EEEeCCCCeeeEEEeCCCChHHHHH
Q 013379 244 LVVDPITGQKMRSWCGMVQPESLLE 268 (444)
Q Consensus 244 ~ii~p~tg~~v~~~~G~~~~~~~l~ 268 (444)
.+.. +|+......|..+++.++.
T Consensus 89 ~lf~--~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 89 HLYY--RSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred EEEE--CCccceEEeCCCCHHHHHh
Confidence 8884 5776677889888887765
No 51
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00033 Score=75.02 Aligned_cols=89 Identities=15% Similarity=0.256 Sum_probs=72.7
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCC-hhH----HHHHHHcC-CC
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SEG----KKVCTYYK-LD 238 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s-~eg----~~~~~~y~-~~ 238 (444)
+..-=++|...|++++|||||.|--.+|.=|++|.++.+.|++|-++||++||..++|-.. |+- ..+++... -.
T Consensus 28 W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~G 107 (667)
T COG1331 28 WYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQG 107 (667)
T ss_pred ccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCC
Confidence 4455589999999999999999999999999999999999999999999999999877533 322 12344443 35
Q ss_pred CCcEEEEEeCCCCeee
Q 013379 239 SIPVVLVVDPITGQKM 254 (444)
Q Consensus 239 ~~P~l~ii~p~tg~~v 254 (444)
.+|.-+|+.| .|+..
T Consensus 108 GWPLtVfLTP-d~kPF 122 (667)
T COG1331 108 GWPLTVFLTP-DGKPF 122 (667)
T ss_pred CCceeEEECC-CCcee
Confidence 7999999999 67654
No 52
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.54 E-value=0.001 Score=55.29 Aligned_cols=92 Identities=20% Similarity=0.287 Sum_probs=64.5
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc------CEEEEEeecCChhHHHHHHHcCCCCC
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST------NFIFWQVYDDTSEGKKVCTYYKLDSI 240 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~------~fV~w~~~~~s~eg~~~~~~y~~~~~ 240 (444)
.+|++++ +.++++||++++++|..|..+... |. .+.+.+++ ++.+..++.+.. ..++..|++.+|
T Consensus 9 ~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~-~~--~~a~~~~~~~~~~~~~~~~~vd~d~~--~~l~~~~~v~~~ 79 (108)
T cd02996 9 GNIDDIL----QSAELVLVNFYADWCRFSQMLHPI-FE--EAAAKIKEEFPDAGKVVWGKVDCDKE--SDIADRYRINKY 79 (108)
T ss_pred hhHHHHH----hcCCEEEEEEECCCCHHHHhhHHH-HH--HHHHHHhhccCCCCcEEEEEEECCCC--HHHHHhCCCCcC
Confidence 3555543 567899999999999999998643 22 22222221 466776776654 468999999999
Q ss_pred cEEEEEeCCCCe-eeEEEeCCCChHHHHHH
Q 013379 241 PVVLVVDPITGQ-KMRSWCGMVQPESLLED 269 (444)
Q Consensus 241 P~l~ii~p~tg~-~v~~~~G~~~~~~~l~~ 269 (444)
|++.++. .|+ ......|..+.+++.+.
T Consensus 80 Ptl~~~~--~g~~~~~~~~g~~~~~~l~~f 107 (108)
T cd02996 80 PTLKLFR--NGMMMKREYRGQRSVEALAEF 107 (108)
T ss_pred CEEEEEe--CCcCcceecCCCCCHHHHHhh
Confidence 9999885 576 34666787787776653
No 53
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.53 E-value=0.00092 Score=55.26 Aligned_cols=96 Identities=8% Similarity=0.136 Sum_probs=67.8
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
+|+++..++++ ++++||+++.++|..|..+.. +|. .+.+-++. ++.+..++.+. ...+++.|++.++|++.
T Consensus 4 ~~~~~~~~~~~-~~~vlv~f~a~wC~~C~~~~p-~l~--~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 4 DLDDSFKDVRK-EDIWLVDFYAPWCGHCKKLEP-VWN--EVGAELKSSGSPVRVGKLDATA--YSSIASEFGVRGYPTIK 77 (104)
T ss_pred echhhhhhhcc-CCeEEEEEECCCCHHHHhhCh-HHH--HHHHHHHhcCCcEEEEEEECcc--CHhHHhhcCCccccEEE
Confidence 56677777644 678999999999999999864 332 33333332 36666666544 34678899999999999
Q ss_pred EEeCCCCeeeEEEeCCCChHHHHHHHHh
Q 013379 245 VVDPITGQKMRSWCGMVQPESLLEDLVP 272 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~~~~~~~l~~L~~ 272 (444)
++. .| .+....|..+.+++...+..
T Consensus 78 l~~--~~-~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 78 LLK--GD-LAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred EEc--CC-CceeecCCCCHHHHHHHHHh
Confidence 995 34 34567888888877766654
No 54
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.52 E-value=0.0016 Score=53.58 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=65.8
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii 246 (444)
.+|++.+. ..+++++|++++++|..|+.+.. +| +.+.+-+...+.+..++.+. ...+++.|++..+|++.++
T Consensus 9 ~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p-~~--~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~ 80 (104)
T cd03004 9 EDFPELVL---NRKEPWLVDFYAPWCGPCQALLP-EL--RKAARALKGKVKVGSVDCQK--YESLCQQANIRAYPTIRLY 80 (104)
T ss_pred HHHHHHHh---cCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhcCCcEEEEEECCc--hHHHHHHcCCCcccEEEEE
Confidence 35555543 45779999999999999999853 12 22233334456677666654 4568899999999999999
Q ss_pred eCCCCeeeEEEeCCCC-hHHHHH
Q 013379 247 DPITGQKMRSWCGMVQ-PESLLE 268 (444)
Q Consensus 247 ~p~tg~~v~~~~G~~~-~~~~l~ 268 (444)
.. .|+.+....|..+ .+++..
T Consensus 81 ~~-g~~~~~~~~G~~~~~~~l~~ 102 (104)
T cd03004 81 PG-NASKYHSYNGWHRDADSILE 102 (104)
T ss_pred cC-CCCCceEccCCCCCHHHHHh
Confidence 74 3477888889876 777654
No 55
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.51 E-value=0.0014 Score=57.63 Aligned_cols=98 Identities=9% Similarity=0.098 Sum_probs=71.4
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHH---hcCEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI---STNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l---~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
..|++++..+ .+|+++|.+..++|..|..+. |-+.++- ++...|+.+|++. ...++..|++.+.|.+
T Consensus 12 ~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m~------p~l~~la~~~~~~~~~~kVDVDe--~~dla~~y~I~~~~t~ 81 (142)
T PLN00410 12 WAVDQAILAE--EERLVVIRFGHDWDETCMQMD------EVLASVAETIKNFAVIYLVDITE--VPDFNTMYELYDPCTV 81 (142)
T ss_pred HHHHHHHHhc--CCCEEEEEEECCCChhHHHHH------HHHHHHHHHcCCceEEEEEECCC--CHHHHHHcCccCCCcE
Confidence 3566666533 789999999999999999984 3333333 3335568777774 4589999999977666
Q ss_pred EEEeCCCCe-eeEEEeC--------CCChHHHHHHHHhhhh
Q 013379 244 LVVDPITGQ-KMRSWCG--------MVQPESLLEDLVPFMD 275 (444)
Q Consensus 244 ~ii~p~tg~-~v~~~~G--------~~~~~~~l~~L~~~l~ 275 (444)
.++- ++|+ .+.+..| ..+.++|+..+..++.
T Consensus 82 ~~ff-k~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 82 MFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred EEEE-ECCeEEEEEecccccccccccCCHHHHHHHHHHHHH
Confidence 6443 2687 7888888 4688899998888765
No 56
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.42 E-value=0.00055 Score=58.08 Aligned_cols=94 Identities=19% Similarity=0.178 Sum_probs=63.6
Q ss_pred HHHHHHcCCeEEEEEeCCCchhhHHHHhhcc----------------CChhHHHHHhcCEEEEEeecCChhHHHHHHHcC
Q 013379 173 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTW----------------ANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYK 236 (444)
Q Consensus 173 ~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~----------------~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~ 236 (444)
+..+...+|+++|++.+++|..|..+...+- ..+.+..+++++-+-|....+ +...+++.|+
T Consensus 13 ~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~ 90 (123)
T cd03011 13 FDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVIND--PDGVISARWG 90 (123)
T ss_pred eeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEEC--CCcHHHHhCC
Confidence 3344456699999999999999988742221 123444444443333322221 2245888999
Q ss_pred CCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHH
Q 013379 237 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 270 (444)
Q Consensus 237 ~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L 270 (444)
+..+|++.||++ +| ++.+..|..+++.+.+++
T Consensus 91 i~~~P~~~vid~-~g-i~~~~~g~~~~~~~~~~~ 122 (123)
T cd03011 91 VSVTPAIVIVDP-GG-IVFVTTGVTSEWGLRLRL 122 (123)
T ss_pred CCcccEEEEEcC-CC-eEEEEeccCCHHHHHhhc
Confidence 999999999997 56 888899999999887653
No 57
>PTZ00051 thioredoxin; Provisional
Probab=97.40 E-value=0.0027 Score=51.51 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=59.9
Q ss_pred HHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeC
Q 013379 171 KAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDP 248 (444)
Q Consensus 171 ~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p 248 (444)
+.+....+.+++++|+++.++|..|..+.. .+..+.++ ++.+..++.+ +...++..|++..+|+++++.
T Consensus 9 ~~~~~~~~~~~~vli~f~~~~C~~C~~~~~------~l~~l~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~- 79 (98)
T PTZ00051 9 AEFESTLSQNELVIVDFYAEWCGPCKRIAP------FYEECSKEYTKMVFVKVDVD--ELSEVAEKENITSMPTFKVFK- 79 (98)
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHhH------HHHHHHHHcCCcEEEEEECc--chHHHHHHCCCceeeEEEEEe-
Confidence 344556678999999999999999999843 33333332 4666655554 456789999999999988774
Q ss_pred CCCeeeEEEeCC
Q 013379 249 ITGQKMRSWCGM 260 (444)
Q Consensus 249 ~tg~~v~~~~G~ 260 (444)
.|+++.++.|.
T Consensus 80 -~g~~~~~~~G~ 90 (98)
T PTZ00051 80 -NGSVVDTLLGA 90 (98)
T ss_pred -CCeEEEEEeCC
Confidence 78999999995
No 58
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.40 E-value=0.0012 Score=54.44 Aligned_cols=82 Identities=11% Similarity=0.099 Sum_probs=60.9
Q ss_pred HHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeee
Q 013379 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 254 (444)
Q Consensus 177 ~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v 254 (444)
...+|++||+++.++|..|+.+. +.+.++-+ .++.+..++.+. +-..++..|++..||++.+++. | .+
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~------p~l~~la~~~~~~~~~~vd~~~-~~~~l~~~~~V~~~PT~~lf~~--g-~~ 84 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFR------PHFNALSSMFPQIRHLAIEESS-IKPSLLSRYGVVGFPTILLFNS--T-PR 84 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHh------HHHHHHHHHhccCceEEEECCC-CCHHHHHhcCCeecCEEEEEcC--C-ce
Confidence 46799999999999999999874 23333322 246666666541 2346889999999999999974 5 67
Q ss_pred EEEeCCCChHHHHH
Q 013379 255 RSWCGMVQPESLLE 268 (444)
Q Consensus 255 ~~~~G~~~~~~~l~ 268 (444)
.+..|..+.+.+.+
T Consensus 85 ~~~~G~~~~~~l~~ 98 (100)
T cd02999 85 VRYNGTRTLDSLAA 98 (100)
T ss_pred eEecCCCCHHHHHh
Confidence 78889888877665
No 59
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.37 E-value=0.0023 Score=52.47 Aligned_cols=90 Identities=21% Similarity=0.320 Sum_probs=66.7
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEe
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~ 247 (444)
+|++.+ ..++++||++++++|..|..+.. +| ..+.+-++.++.|..++.+.. ..+++.|++..||++.++.
T Consensus 10 ~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p-~~--~~~a~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 10 DFDAAV----NSGEIWFVNFYSPRCSHCHDLAP-TW--REFAKEMDGVIRIGAVNCGDD--RMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred hHHHHh----cCCCeEEEEEECCCChHHHHhHH-HH--HHHHHHhcCceEEEEEeCCcc--HHHHHHcCCCccCEEEEEc
Confidence 555544 45699999999999999998853 22 134444556778887787653 5688999999999998884
Q ss_pred CCCCeeeEEEeCCCChHHHHH
Q 013379 248 PITGQKMRSWCGMVQPESLLE 268 (444)
Q Consensus 248 p~tg~~v~~~~G~~~~~~~l~ 268 (444)
+|..+....|..+.+.+..
T Consensus 81 --~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 81 --SGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred --CCCCcccCCCCCCHHHHHh
Confidence 6877778889888776654
No 60
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0026 Score=53.23 Aligned_cols=84 Identities=15% Similarity=0.262 Sum_probs=70.9
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
.+++.....+...+|+++|++.+++|..|..+ .|.+.++-.+ +-+|+.+|++. -..+++.|++...|++.
T Consensus 8 ~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i------~P~~~~La~~y~~v~Flkvdvde--~~~~~~~~~V~~~PTf~ 79 (106)
T KOG0907|consen 8 SDLDLVLSAAEAGDKLVVVDFYATWCGPCKAI------APKFEKLAEKYPDVVFLKVDVDE--LEEVAKEFNVKAMPTFV 79 (106)
T ss_pred hhHHHHHHHhhCCCCeEEEEEECCCCcchhhh------hhHHHHHHHHCCCCEEEEEeccc--CHhHHHhcCceEeeEEE
Confidence 46677777777778999999999999999987 4666666653 58899899988 88899999999999999
Q ss_pred EEeCCCCeeeEEEeCC
Q 013379 245 VVDPITGQKMRSWCGM 260 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~ 260 (444)
++. .|+.+..+.|.
T Consensus 80 f~k--~g~~~~~~vGa 93 (106)
T KOG0907|consen 80 FYK--GGEEVDEVVGA 93 (106)
T ss_pred EEE--CCEEEEEEecC
Confidence 994 79988888885
No 61
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.34 E-value=0.0025 Score=54.03 Aligned_cols=84 Identities=12% Similarity=0.170 Sum_probs=63.8
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeE
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR 255 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~ 255 (444)
.+++++|+++.++|.+|..|. +.+.++-.+ ...|+.++++. -..++..|++.+.|+++++. +|+.+.
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~------P~le~la~~~~~~v~f~kVDvD~--~~~la~~~~V~~iPTf~~fk--~G~~v~ 82 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMD------EVLAKIAEDVSNFAVIYLVDIDE--VPDFNKMYELYDPPTVMFFF--RNKHMK 82 (114)
T ss_pred CCCEEEEEEECCCChhHHHHH------HHHHHHHHHccCceEEEEEECCC--CHHHHHHcCCCCCCEEEEEE--CCEEEE
Confidence 688999999999999999984 445455443 34578777765 45789999999999999997 698888
Q ss_pred EEeCCC----------ChHHHHHHHHh
Q 013379 256 SWCGMV----------QPESLLEDLVP 272 (444)
Q Consensus 256 ~~~G~~----------~~~~~l~~L~~ 272 (444)
+..|.. +.++||..+..
T Consensus 83 ~~~G~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02954 83 IDLGTGNNNKINWVFEDKQEFIDIIET 109 (114)
T ss_pred EEcCCCCCceEEEecCcHHHHHHHHHH
Confidence 887632 45666665543
No 62
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.28 E-value=0.0026 Score=58.58 Aligned_cols=91 Identities=13% Similarity=0.126 Sum_probs=68.3
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCC-hh-HHH-------------------HHHHcC
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SE-GKK-------------------VCTYYK 236 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s-~e-g~~-------------------~~~~y~ 236 (444)
..+|+++||+..++|..|...- +.+.++-+.++.+++++.+. .+ ... ++..|+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~------p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 139 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEH------QYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 139 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHH------HHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence 3689999999999999998864 34555555577777777543 22 221 334678
Q ss_pred CCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 237 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 237 ~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
+..+|+.+|||+ +|+++.+..|..+.+++-..+...+.
T Consensus 140 v~~~P~t~vid~-~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 140 VYGAPETFLIDG-NGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CCcCCeEEEECC-CceEEEEEecCCCHHHHHHHHHHHHH
Confidence 888999999997 59999999999988888777777664
No 63
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.24 E-value=0.0027 Score=51.85 Aligned_cols=85 Identities=18% Similarity=0.189 Sum_probs=63.0
Q ss_pred HHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCe--
Q 013379 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ-- 252 (444)
Q Consensus 177 ~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~-- 252 (444)
.+.++++||++++++|..|+.|...+ ..+.+.+++ ++.+..++.+.. .++..+++..+|++.++.. |.
T Consensus 15 ~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~---~~~~~~~~~~~Pt~~~~~~--~~~~ 86 (104)
T cd02995 15 LDSDKDVLVEFYAPWCGHCKALAPIY---EELAEKLKGDDNVVIAKMDATAN---DVPSEFVVDGFPTILFFPA--GDKS 86 (104)
T ss_pred hCCCCcEEEEEECCCCHHHHHHhhHH---HHHHHHhcCCCCEEEEEEeCcch---hhhhhccCCCCCEEEEEcC--CCcC
Confidence 35568999999999999999986433 455555554 688888887653 4677888899999999964 43
Q ss_pred eeEEEeCCCChHHHHHH
Q 013379 253 KMRSWCGMVQPESLLED 269 (444)
Q Consensus 253 ~v~~~~G~~~~~~~l~~ 269 (444)
......|..+...|+..
T Consensus 87 ~~~~~~g~~~~~~l~~f 103 (104)
T cd02995 87 NPIKYEGDRTLEDLIKF 103 (104)
T ss_pred CceEccCCcCHHHHHhh
Confidence 45567788777776653
No 64
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.24 E-value=0.0037 Score=52.81 Aligned_cols=95 Identities=16% Similarity=0.283 Sum_probs=70.5
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cC-EEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TN-FIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~-fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
..|++++..+ ++|+++|.+..++|.+|..+. |-+.++-+ .+ .+|+.+|++ |...+++.|.+...|+.
T Consensus 3 ~~~d~~i~~~--~~klVVVdF~a~WC~pCk~md------p~l~ela~~~~~~~~f~kVDVD--ev~dva~~y~I~amPtf 72 (114)
T cd02986 3 KEVDQAIKST--AEKVLVLRFGRDEDAVCLQLD------DILSKTSHDLSKMASIYLVDVD--KVPVYTQYFDISYIPST 72 (114)
T ss_pred HHHHHHHHhc--CCCEEEEEEeCCCChhHHHHH------HHHHHHHHHccCceEEEEEecc--ccHHHHHhcCceeCcEE
Confidence 4577888877 899999999999999999984 55555554 35 889988876 56679999999999999
Q ss_pred EEEeCCCCeee---------EEEeCCC-ChHHHHHHHHhh
Q 013379 244 LVVDPITGQKM---------RSWCGMV-QPESLLEDLVPF 273 (444)
Q Consensus 244 ~ii~p~tg~~v---------~~~~G~~-~~~~~l~~L~~~ 273 (444)
+++- +|+-+ ..|.+.+ +.++|+..+...
T Consensus 73 vffk--ngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 73 IFFF--NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred EEEE--CCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 9876 45422 2333433 668888877654
No 65
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.23 E-value=0.0048 Score=60.40 Aligned_cols=93 Identities=14% Similarity=0.123 Sum_probs=70.9
Q ss_pred HHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCChh---------HHHHHHHcCCCCCcEEEEE
Q 013379 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSE---------GKKVCTYYKLDSIPVVLVV 246 (444)
Q Consensus 177 ~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~e---------g~~~~~~y~~~~~P~l~ii 246 (444)
.-.+|+.||++..++|..|+.+ .+.+.++-++ ++.+..++++... ...++..|++..+|+++|+
T Consensus 163 ~l~~k~~Lv~F~AswCp~C~~~------~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv 236 (271)
T TIGR02740 163 DLAKKSGLFFFFKSDCPYCHQQ------APILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLA 236 (271)
T ss_pred HhcCCeEEEEEECCCCccHHHH------hHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEE
Confidence 3458999999999999999986 3566666654 4666666665421 1346889999999999999
Q ss_pred eCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 247 DPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 247 ~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
++.+|.+.....|.++.+++...+.....
T Consensus 237 ~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 237 DPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred ECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 98767666566799999999988876644
No 66
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.20 E-value=0.0024 Score=52.10 Aligned_cols=87 Identities=15% Similarity=0.202 Sum_probs=61.8
Q ss_pred HHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeee
Q 013379 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 254 (444)
Q Consensus 177 ~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v 254 (444)
+..+|+++|++++++|..|..+... | ..+.+.+. .++.+..++.+.. ...+++.|++..+|++.++.+ .|...
T Consensus 15 ~~~~~~~~v~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~i~~~P~~~~~~~-~~~~~ 89 (105)
T cd02998 15 GDDKKDVLVEFYAPWCGHCKNLAPE-Y--EKLAAVFANEDDVVIAKVDADEA-NKDLAKKYGVSGFPTLKFFPK-GSTEP 89 (105)
T ss_pred cCCCCcEEEEEECCCCHHHHhhChH-H--HHHHHHhCCCCCEEEEEEECCCc-chhhHHhCCCCCcCEEEEEeC-CCCCc
Confidence 4456899999999999999987322 1 12233333 3588887666553 457889999999999999985 34555
Q ss_pred EEEeCCCChHHHHH
Q 013379 255 RSWCGMVQPESLLE 268 (444)
Q Consensus 255 ~~~~G~~~~~~~l~ 268 (444)
....|..+.+.+..
T Consensus 90 ~~~~g~~~~~~l~~ 103 (105)
T cd02998 90 VKYEGGRDLEDLVK 103 (105)
T ss_pred cccCCccCHHHHHh
Confidence 66778777777654
No 67
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.19 E-value=0.0027 Score=53.43 Aligned_cols=70 Identities=13% Similarity=0.300 Sum_probs=54.6
Q ss_pred CCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEE
Q 013379 180 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW 257 (444)
Q Consensus 180 ~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~ 257 (444)
+++++|++++++|..|..+. +.+.++..+ +..|..++.+.. .+++.|++..+|+++++. .|+.+.++
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~------~~l~~la~~~~~v~f~~vd~~~~---~l~~~~~i~~~Pt~~~f~--~G~~v~~~ 92 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILD------SHLEELAAKYPETKFVKINAEKA---FLVNYLDIKVLPTLLVYK--NGELIDNI 92 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHH------HHHHHHHHHCCCcEEEEEEchhh---HHHHhcCCCcCCEEEEEE--CCEEEEEE
Confidence 58999999999999999884 344444442 355666666543 889999999999999886 69999999
Q ss_pred eCC
Q 013379 258 CGM 260 (444)
Q Consensus 258 ~G~ 260 (444)
.|.
T Consensus 93 ~G~ 95 (113)
T cd02957 93 VGF 95 (113)
T ss_pred ecH
Confidence 883
No 68
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.18 E-value=0.0058 Score=49.95 Aligned_cols=92 Identities=11% Similarity=0.234 Sum_probs=63.9
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
..+|++++ +++| ||+++.++|..|..+... |. .+.+..+. ++.+..++.+.. ..++..|++..+|++.
T Consensus 8 ~~~f~~~~-----~~~~-lv~f~a~wC~~C~~~~p~-~~--~l~~~~~~~~v~~~~vd~~~~--~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 8 DSNWTLVL-----EGEW-MIEFYAPWCPACQQLQPE-WE--EFADWSDDLGINVAKVDVTQE--PGLSGRFFVTALPTIY 76 (101)
T ss_pred hhhHHHHh-----CCCE-EEEEECCCCHHHHHHhHH-HH--HHHHhhccCCeEEEEEEccCC--HhHHHHcCCcccCEEE
Confidence 34566544 3455 699999999999998542 22 22333332 577787777643 4578899999999998
Q ss_pred EEeCCCCeeeEEEeCCCChHHHHHHHH
Q 013379 245 VVDPITGQKMRSWCGMVQPESLLEDLV 271 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~~~~~~~l~~L~ 271 (444)
++. .|++ ....|..+.+++.+.|.
T Consensus 77 ~~~--~g~~-~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 77 HAK--DGVF-RRYQGPRDKEDLISFIE 100 (101)
T ss_pred EeC--CCCE-EEecCCCCHHHHHHHHh
Confidence 873 5764 67789888887776654
No 69
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.16 E-value=0.0071 Score=49.23 Aligned_cols=89 Identities=16% Similarity=0.316 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
+|++++ ..+ ++||+++.++|..|+.+... |. .+.+..+. ++.+..++.+.. ..+++.|++..+|++.
T Consensus 9 ~f~~~~----~~~-~~lv~f~a~wC~~C~~~~p~-~~--~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~ 78 (102)
T cd03005 9 NFDHHI----AEG-NHFVKFFAPWCGHCKRLAPT-WE--QLAKKFNNENPSVKIAKVDCTQH--RELCSEFQVRGYPTLL 78 (102)
T ss_pred HHHHHh----hcC-CEEEEEECCCCHHHHHhCHH-HH--HHHHHHhccCCcEEEEEEECCCC--hhhHhhcCCCcCCEEE
Confidence 455555 233 49999999999999988432 21 23333333 577777776543 3678899999999999
Q ss_pred EEeCCCCeeeEEEeCCCChHHHHH
Q 013379 245 VVDPITGQKMRSWCGMVQPESLLE 268 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~~~~~~~l~ 268 (444)
++. .|..+.+..|..+.+++..
T Consensus 79 ~~~--~g~~~~~~~G~~~~~~l~~ 100 (102)
T cd03005 79 LFK--DGEKVDKYKGTRDLDSLKE 100 (102)
T ss_pred EEe--CCCeeeEeeCCCCHHHHHh
Confidence 994 5777778889888776544
No 70
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.14 E-value=0.0085 Score=51.40 Aligned_cols=94 Identities=9% Similarity=0.145 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCCh---------hHHHHHHHcCC
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS---------EGKKVCTYYKL 237 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~---------eg~~~~~~y~~ 237 (444)
+.++.. ...+.++..+||+..++|..|+.| .|.+.++.++ +.-+|.++++.. +-..+...|++
T Consensus 12 t~~~~~-~~i~~~~~~iv~f~~~~Cp~C~~~------~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 12 TVVRAL-EALDKKETATFFIGRKTCPYCRKF------SGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred CHHHHH-HHHHcCCcEEEEEECCCChhHHHH------hHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 444433 334678889999999999999998 4777777764 344666677632 23356667665
Q ss_pred C----CCcEEEEEeCCCCeeeEEEeCC-CChHHHHHHH
Q 013379 238 D----SIPVVLVVDPITGQKMRSWCGM-VQPESLLEDL 270 (444)
Q Consensus 238 ~----~~P~l~ii~p~tg~~v~~~~G~-~~~~~~l~~L 270 (444)
. ..|+++++. .|+.+.++.|. .+.+++...|
T Consensus 85 ~~~i~~~PT~v~~k--~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 85 PTSFMGTPTFVHIT--DGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred cccCCCCCEEEEEe--CCeEEEEEeCCCCCHHHHHHHh
Confidence 4 599999997 79999999894 4566665543
No 71
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.12 E-value=0.0061 Score=54.85 Aligned_cols=88 Identities=19% Similarity=0.252 Sum_probs=65.0
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHH----hcCEEEEEeecCChh--------------------HHHHHH
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSE--------------------GKKVCT 233 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l----~~~fV~w~~~~~s~e--------------------g~~~~~ 233 (444)
-.+|+++|++.+++|..|.... +.+.++. ..++.++.++.+... ...+++
T Consensus 59 ~~~k~~~l~f~a~~C~~C~~~~------~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 132 (173)
T PRK03147 59 LKGKGVFLNFWGTWCKPCEKEM------PYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVID 132 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHH------HHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHH
Confidence 3578899999999998887653 3333333 344667777665432 135678
Q ss_pred HcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHh
Q 013379 234 YYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 272 (444)
Q Consensus 234 ~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~ 272 (444)
.|++..+|++.||++ +|+++..+.|..+.+++.+.|..
T Consensus 133 ~~~v~~~P~~~lid~-~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 133 AYGVGPLPTTFLIDK-DGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred HcCCCCcCeEEEECC-CCcEEEEEeCCCCHHHHHHHHHH
Confidence 899999999999997 68999899999988888777654
No 72
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.11 E-value=0.008 Score=51.44 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=69.0
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchh--hHHHHhhccCC----hhHHHHH-hcCEEEEEeecCChhHHHHHHHcCCCC
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFS--SHMLNRDTWAN----EAVSQTI-STNFIFWQVYDDTSEGKKVCTYYKLDS 239 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~--~~~f~rdv~~~----~~V~~~l-~~~fV~w~~~~~s~eg~~~~~~y~~~~ 239 (444)
.+|++. -++..++++|+....+|-. |. ...-. +.-.+++ .....+..+|++. ...+++.|++.+
T Consensus 17 ~nF~~~---v~~~~~~vvv~f~a~wc~p~~Ck----~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~--~~~La~~~~I~~ 87 (120)
T cd03065 17 KNYKQV---LKKYDVLCLLYHEPVESDKEAQK----QFQMEELVLELAAQVLEDKGIGFGLVDSKK--DAKVAKKLGLDE 87 (120)
T ss_pred hhHHHH---HHhCCceEEEEECCCcCChhhCh----hhcchhhHHHHHHHHhhcCCCEEEEEeCCC--CHHHHHHcCCcc
Confidence 455544 3466678888888888754 55 22234 2233344 3468888777764 478999999999
Q ss_pred CcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 240 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 240 ~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
+|++.++. +|+.+. +.|..+.+.+...|...+
T Consensus 88 iPTl~lfk--~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 88 EDSIYVFK--DDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccEEEEEE--CCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 99999996 798877 889999999888887654
No 73
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.11 E-value=0.0061 Score=57.93 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=75.8
Q ss_pred ccCcHHHHHHHHH-HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 165 FNGSFEKAKDAAS-VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 165 ~~gs~~~A~~~A~-~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
-..+|++.+.... ...+++||+++.++|..|..+... | +.+.+-++..+.+..++. .+...+++.|++..||++
T Consensus 36 t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~-~--e~la~~~~~~v~~~~VD~--~~~~~l~~~~~I~~~PTl 110 (224)
T PTZ00443 36 NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPA-W--ERLAKALKGQVNVADLDA--TRALNLAKRFAIKGYPTL 110 (224)
T ss_pred CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHH-H--HHHHHHcCCCeEEEEecC--cccHHHHHHcCCCcCCEE
Confidence 3567887666553 356889999999999999998653 3 445555555555554444 445678999999999999
Q ss_pred EEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 244 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 244 ~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
.++. .|+.+....|..+.+++...+..-+.
T Consensus 111 ~~f~--~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 111 LLFD--KGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred EEEE--CCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 9998 58877777788888887776655543
No 74
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=97.09 E-value=0.0004 Score=50.07 Aligned_cols=41 Identities=24% Similarity=0.384 Sum_probs=35.7
Q ss_pred HHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013379 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (444)
Q Consensus 12 ~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (444)
++|.+|+.. ||-+.+=|..+|+.++||++.|+..|......
T Consensus 2 ~mv~~~s~~-Tgmn~~~s~~CL~~n~Wd~~~A~~~F~~l~~~ 42 (51)
T PF03943_consen 2 EMVQQFSQQ-TGMNLEWSQKCLEENNWDYERALQNFEELKAQ 42 (51)
T ss_dssp HHHHHHHHH-CSS-CCHHHHHHHHTTT-CCHHHHHHHHCCCT
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 488999999 99999999999999999999999999986544
No 75
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.08 E-value=0.01 Score=48.38 Aligned_cols=86 Identities=13% Similarity=0.171 Sum_probs=60.3
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEE
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW 257 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~ 257 (444)
+.+++++|++++++|..|..|... | ..+.+-+...+.+..++.+ +...+++.|++..+|++.++.+. .......
T Consensus 16 ~~~~~vlv~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~id~~--~~~~~~~~~~i~~~P~~~~~~~~-~~~~~~~ 89 (103)
T cd03001 16 NSDDVWLVEFYAPWCGHCKNLAPE-W--KKAAKALKGIVKVGAVDAD--VHQSLAQQYGVRGFPTIKVFGAG-KNSPQDY 89 (103)
T ss_pred cCCCcEEEEEECCCCHHHHHHhHH-H--HHHHHHhcCCceEEEEECc--chHHHHHHCCCCccCEEEEECCC-Ccceeec
Confidence 457789999999999999998422 2 2233334445566655554 34568899999999999999742 2445567
Q ss_pred eCCCChHHHHHH
Q 013379 258 CGMVQPESLLED 269 (444)
Q Consensus 258 ~G~~~~~~~l~~ 269 (444)
.|..+.+.+...
T Consensus 90 ~g~~~~~~l~~~ 101 (103)
T cd03001 90 QGGRTAKAIVSA 101 (103)
T ss_pred CCCCCHHHHHHH
Confidence 788888777654
No 76
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.05 E-value=0.014 Score=49.17 Aligned_cols=102 Identities=9% Similarity=0.075 Sum_probs=74.1
Q ss_pred HHHHhhcCCCccCcccCcHHHHHHHHHHcCCeEEEEEeCC--CchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCC
Q 013379 151 DNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQST--KEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDT 225 (444)
Q Consensus 151 ~~l~~~f~pp~~~~~~gs~~~A~~~A~~~~K~LlVyl~~~--~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s 225 (444)
++|..+-+ +|-.-..+|++-. +.+..++|.++.+ +|.+|..+. +.+.++.++ .+.|+.++.+.
T Consensus 4 ~~~~~~~~--~~~~~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~------P~leela~e~~~~v~f~kVdid~ 71 (111)
T cd02965 4 ARLQTRHG--WPRVDAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVA------VVLPELLKAFPGRFRAAVVGRAD 71 (111)
T ss_pred HHHHHhcC--CcccccccHHHHH----hCCCCEEEEecCCcccCcchhhhH------hHHHHHHHHCCCcEEEEEEECCC
Confidence 34544443 3334567888655 6667788888888 499999873 555555553 35566666655
Q ss_pred hhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHH
Q 013379 226 SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLE 268 (444)
Q Consensus 226 ~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~ 268 (444)
. ..++..|++.+.|+++++. +|+.+..+.|..+.+++..
T Consensus 72 ~--~~la~~f~V~sIPTli~fk--dGk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 72 E--QALAARFGVLRTPALLFFR--DGRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred C--HHHHHHcCCCcCCEEEEEE--CCEEEEEEeCccCHHHHhh
Confidence 4 3899999999999999997 6999999999888877653
No 77
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=97.01 E-value=0.0011 Score=49.87 Aligned_cols=44 Identities=30% Similarity=0.443 Sum_probs=38.7
Q ss_pred CCcchHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 5 LSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 5 l~~~~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
++..+ +.+|..|+.. ||.+.+=+..+|+.+|||++.|+..|-+-
T Consensus 8 ~~~~q-~~~v~~~~~~-Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~l 51 (63)
T smart00804 8 LSPEQ-QEMVQAFSAQ-TGMNAEYSQMCLEDNNWDYERALKNFTEL 51 (63)
T ss_pred CCHHH-HHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33444 5589999999 99999999999999999999999999874
No 78
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.98 E-value=0.0062 Score=51.42 Aligned_cols=77 Identities=9% Similarity=0.220 Sum_probs=58.8
Q ss_pred HHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCC
Q 013379 174 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITG 251 (444)
Q Consensus 174 ~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg 251 (444)
..+.++.++++|+++.++|..|+.+. +.+.++.++ +..|+.++.+. ...+++.|++...|+++++. .|
T Consensus 16 ~~~i~~~~~vvV~f~a~~c~~C~~~~------p~l~~la~~~~~i~f~~Vd~~~--~~~l~~~~~v~~vPt~l~fk--~G 85 (113)
T cd02989 16 FEIVKSSERVVCHFYHPEFFRCKIMD------KHLEILAKKHLETKFIKVNAEK--APFLVEKLNIKVLPTVILFK--NG 85 (113)
T ss_pred HHHHhCCCcEEEEEECCCCccHHHHH------HHHHHHHHHcCCCEEEEEEccc--CHHHHHHCCCccCCEEEEEE--CC
Confidence 33345678999999999999999884 445555543 46677656544 45689999999999999997 69
Q ss_pred eeeEEEeCC
Q 013379 252 QKMRSWCGM 260 (444)
Q Consensus 252 ~~v~~~~G~ 260 (444)
+.+.++.|.
T Consensus 86 ~~v~~~~g~ 94 (113)
T cd02989 86 KTVDRIVGF 94 (113)
T ss_pred EEEEEEECc
Confidence 999888874
No 79
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=96.94 E-value=0.009 Score=53.40 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=63.0
Q ss_pred HHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCChh-----------HHHHHHHc---CCCCCc
Q 013379 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSE-----------GKKVCTYY---KLDSIP 241 (444)
Q Consensus 177 ~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~e-----------g~~~~~~y---~~~~~P 241 (444)
....++.|||+..++|..|... .+.+.++-++ +|.+..++.+... +......| ++..+|
T Consensus 47 ~~l~~~~lvnFWAsWCppCr~e------~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iP 120 (153)
T TIGR02738 47 ANQDDYALVFFYQSTCPYCHQF------APVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTP 120 (153)
T ss_pred hhcCCCEEEEEECCCChhHHHH------HHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCC
Confidence 3445667999999999999986 3556665553 4555555554321 22223455 788999
Q ss_pred EEEEEeCCCCeeeEEEeCCCChHHHHHHHHhh
Q 013379 242 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 242 ~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~ 273 (444)
+.+|||+..|.+..+..|.++.+++...|...
T Consensus 121 Tt~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 121 ATFLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred eEEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 99999986555666788999988887776654
No 80
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.93 E-value=0.015 Score=49.00 Aligned_cols=93 Identities=11% Similarity=0.057 Sum_probs=64.4
Q ss_pred HHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCC
Q 013379 173 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPIT 250 (444)
Q Consensus 173 ~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~t 250 (444)
+..+....+.++|+++.++|..|+.+-+ -+.++.. ...-+..++.+ +...++..|++.+.|+++|...
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~------~l~~la~~~~~i~~~~vd~d--~~~~l~~~~~v~~vPt~~i~~~-- 84 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQ------LLEELSELSDKLKLEIYDFD--EDKEKAEKYGVERVPTTIFLQD-- 84 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHH------HHHHHHHhcCceEEEEEeCC--cCHHHHHHcCCCcCCEEEEEeC--
Confidence 3344567788999999999999998732 2222222 34445655665 4568999999999999999973
Q ss_pred CeeeE--EEeCCCChHHHHHHHHhhhh
Q 013379 251 GQKMR--SWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 251 g~~v~--~~~G~~~~~~~l~~L~~~l~ 275 (444)
|.... ++.|..+..+|.+.|...+.
T Consensus 85 g~~~~~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 85 GGKDGGIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred CeecceEEEEecCchHHHHHHHHHHHh
Confidence 32222 57798888888877776554
No 81
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=96.93 E-value=0.0054 Score=52.39 Aligned_cols=83 Identities=13% Similarity=0.142 Sum_probs=57.5
Q ss_pred HHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcC-EEEEEeecCC---------------------hhHHHHHH
Q 013379 176 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN-FIFWQVYDDT---------------------SEGKKVCT 233 (444)
Q Consensus 176 A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~-fV~w~~~~~s---------------------~eg~~~~~ 233 (444)
+.-.+|+++|++.+.+|..|...- +.+.++-+.. +.+++++.+. .....++.
T Consensus 21 ~~~~gk~vvv~F~a~~C~~C~~~~------~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 94 (127)
T cd03010 21 ADLKGKPYLLNVWASWCAPCREEH------PVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGI 94 (127)
T ss_pred HHcCCCEEEEEEEcCcCHHHHHHH------HHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHH
Confidence 333589999999999999998764 2333333322 4445444311 12234667
Q ss_pred HcCCCCCcEEEEEeCCCCeeeEEEeCCCChHH
Q 013379 234 YYKLDSIPVVLVVDPITGQKMRSWCGMVQPES 265 (444)
Q Consensus 234 ~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~ 265 (444)
.|++..+|+.+||++ +|.++.++.|.++.+.
T Consensus 95 ~~~v~~~P~~~~ld~-~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 95 DLGVYGVPETFLIDG-DGIIRYKHVGPLTPEV 125 (127)
T ss_pred hcCCCCCCeEEEECC-CceEEEEEeccCChHh
Confidence 899999999999996 6999999999887664
No 82
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.80 E-value=0.01 Score=48.52 Aligned_cols=89 Identities=22% Similarity=0.277 Sum_probs=61.3
Q ss_pred CCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCC--CCcEEEEEeCCCCeeeEEE
Q 013379 180 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLD--SIPVVLVVDPITGQKMRSW 257 (444)
Q Consensus 180 ~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~--~~P~l~ii~p~tg~~v~~~ 257 (444)
+++++|.+.+++|..|..+-..+ .+|.+-.+..+.|.. ++..+...++..|++. .+|+++++...+|.+....
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~---~~vA~~~~~~v~f~~--vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~ 86 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERF---KEVAKKFKGKLLFVV--VDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMP 86 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHH---HHHHHHhCCeEEEEE--EchHhhHHHHHHcCCChhhCCEEEEEecccccccCCC
Confidence 68899999999888888874211 233333345566664 4445566799999998 9999999997556665555
Q ss_pred eCCCChHHHHHHHHhh
Q 013379 258 CGMVQPESLLEDLVPF 273 (444)
Q Consensus 258 ~G~~~~~~~l~~L~~~ 273 (444)
.|..+.+.+...|..+
T Consensus 87 ~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 87 EEELTAESLEEFVEDF 102 (103)
T ss_pred ccccCHHHHHHHHHhh
Confidence 5556777766665543
No 83
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.76 E-value=0.018 Score=55.69 Aligned_cols=92 Identities=12% Similarity=0.148 Sum_probs=74.5
Q ss_pred CCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCCh--hH-------HHHHHHcCCCCCcEEEEEeCC
Q 013379 180 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS--EG-------KKVCTYYKLDSIPVVLVVDPI 249 (444)
Q Consensus 180 ~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~--eg-------~~~~~~y~~~~~P~l~ii~p~ 249 (444)
.+|-||++....|..|+.|. +-|+.|-+. +|-+..+++|.. .+ ...++.+++..+|.+++|+|.
T Consensus 150 ~~~gL~fFy~~~C~~C~~~a------pil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~ 223 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMA------PVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPK 223 (256)
T ss_pred hceeEEEEECCCCchhHHHH------HHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECC
Confidence 46999999999999999983 566666654 677777777654 11 345778899999999999999
Q ss_pred CCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 250 TGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 250 tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
|++..-.-.|.++.++|+.++..+...+
T Consensus 224 t~~~~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 224 SQKMSPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred CCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 8887777789999999999999888766
No 84
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=96.69 E-value=0.0085 Score=48.91 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=56.0
Q ss_pred HHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh----cCEEEEEeecCC--hhH-------------------
Q 013379 174 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDT--SEG------------------- 228 (444)
Q Consensus 174 ~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~----~~fV~w~~~~~s--~eg------------------- 228 (444)
..+...+|+++|++..++|..|..+. +.+.++.+ .++.++.++.+. .+.
T Consensus 13 ~~~~~~~k~~ll~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (116)
T cd02966 13 SLSDLKGKVVLVNFWASWCPPCRAEM------PELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPD 86 (116)
T ss_pred ehHHcCCCEEEEEeecccChhHHHHh------HHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCc
Confidence 33444589999999999998887652 33444333 356677767765 222
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCeeeEEEeC
Q 013379 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCG 259 (444)
Q Consensus 229 ~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G 259 (444)
..++..|++..+|.++|+++ +|+++....|
T Consensus 87 ~~~~~~~~~~~~P~~~l~d~-~g~v~~~~~g 116 (116)
T cd02966 87 GELAKAYGVRGLPTTFLIDR-DGRIRARHVG 116 (116)
T ss_pred chHHHhcCcCccceEEEECC-CCcEEEEecC
Confidence 55778899999999999997 5888877665
No 85
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=96.68 E-value=0.013 Score=50.42 Aligned_cols=72 Identities=14% Similarity=0.259 Sum_probs=51.1
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh------cCEEEEEeecCChh----------------------HH
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS------TNFIFWQVYDDTSE----------------------GK 229 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~------~~fV~w~~~~~s~e----------------------g~ 229 (444)
-.+|++|||+..++|..|..+. +.+.++.+ .++.++.++.+..+ ..
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~------p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFT------PKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRS 89 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHh------HHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHH
Confidence 3679999999999999998764 34443332 14656656655432 13
Q ss_pred HHHHHcCCCCCcEEEEEeCCCCeeeEE
Q 013379 230 KVCTYYKLDSIPVVLVVDPITGQKMRS 256 (444)
Q Consensus 230 ~~~~~y~~~~~P~l~ii~p~tg~~v~~ 256 (444)
.++..|++..+|+++||++ +|+++.+
T Consensus 90 ~~~~~~~v~~~P~~~lid~-~G~i~~~ 115 (131)
T cd03009 90 RLNRTFKIEGIPTLIILDA-DGEVVTT 115 (131)
T ss_pred HHHHHcCCCCCCEEEEECC-CCCEEcc
Confidence 5678899999999999997 6876644
No 86
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.64 E-value=0.027 Score=54.18 Aligned_cols=92 Identities=13% Similarity=0.166 Sum_probs=72.8
Q ss_pred CCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCCh---h------HHHHHHHcCCCCCcEEEEEeCC
Q 013379 180 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS---E------GKKVCTYYKLDSIPVVLVVDPI 249 (444)
Q Consensus 180 ~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~---e------g~~~~~~y~~~~~P~l~ii~p~ 249 (444)
++|-||+++.+.|..|+.|. +-|+.|-+. +|-++.+++|.. + ....+..+++..+|.+++|+|.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~a------Pil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~ 216 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLA------QVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPK 216 (248)
T ss_pred hcceEEEEECCCCchhHHHH------HHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECC
Confidence 46999999999999999983 666666654 677877777541 1 1123467899999999999999
Q ss_pred CCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 250 TGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 250 tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
|++..-.-.|.++.++|..++..+...+
T Consensus 217 t~~~~pv~~G~iS~deL~~Ri~~v~t~~ 244 (248)
T PRK13703 217 SGSVRPLSYGFITQDDLAKRFLNVSTDF 244 (248)
T ss_pred CCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 9887777789999999999999887655
No 87
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.61 E-value=0.021 Score=52.12 Aligned_cols=82 Identities=16% Similarity=0.263 Sum_probs=60.6
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
..|.+++..+. .+++++|+++.++|..|..|+ +.+..+..+ +..|+.++++.. .++..|++..+|+++
T Consensus 71 ~~f~~~v~~~~-~~~~VVV~Fya~wc~~Ck~m~------~~l~~LA~~~~~vkF~kVd~d~~---~l~~~f~v~~vPTll 140 (175)
T cd02987 71 EQFLDAIDKEG-KDTTVVVHIYEPGIPGCAALN------SSLLCLAAEYPAVKFCKIRASAT---GASDEFDTDALPALL 140 (175)
T ss_pred HHHHHHHHhcC-CCcEEEEEEECCCCchHHHHH------HHHHHHHHHCCCeEEEEEeccch---hhHHhCCCCCCCEEE
Confidence 44554443221 235999999999999999985 344444443 477887777653 788999999999999
Q ss_pred EEeCCCCeeeEEEeCC
Q 013379 245 VVDPITGQKMRSWCGM 260 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~ 260 (444)
|+- .|+.+.++.|.
T Consensus 141 lyk--~G~~v~~~vG~ 154 (175)
T cd02987 141 VYK--GGELIGNFVRV 154 (175)
T ss_pred EEE--CCEEEEEEech
Confidence 997 69999888874
No 88
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=96.58 E-value=0.026 Score=50.32 Aligned_cols=81 Identities=11% Similarity=0.146 Sum_probs=60.0
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh----cCEEEEEeecCChhHHHHHHHcCCCC---
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEGKKVCTYYKLDS--- 239 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~----~~fV~w~~~~~s~eg~~~~~~y~~~~--- 239 (444)
.+|++.+. ...+++++|+++.++|..|+.+. +.+.++.+ .++.|..++.+.. ..+++.|++..
T Consensus 36 ~~f~~~l~--~~~~~~vvV~Fya~wC~~Ck~l~------p~l~~la~~~~~~~v~f~~VDvd~~--~~la~~~~V~~~~~ 105 (152)
T cd02962 36 KTLEEELE--RDKRVTWLVEFFTTWSPECVNFA------PVFAELSLKYNNNNLKFGKIDIGRF--PNVAEKFRVSTSPL 105 (152)
T ss_pred HHHHHHHH--hcCCCEEEEEEECCCCHHHHHHH------HHHHHHHHHcccCCeEEEEEECCCC--HHHHHHcCceecCC
Confidence 34555443 23568999999999999999884 34444443 3588888887654 36788888877
Q ss_pred ---CcEEEEEeCCCCeeeEEEeC
Q 013379 240 ---IPVVLVVDPITGQKMRSWCG 259 (444)
Q Consensus 240 ---~P~l~ii~p~tg~~v~~~~G 259 (444)
+|++.+.. .|+.+.++.|
T Consensus 106 v~~~PT~ilf~--~Gk~v~r~~G 126 (152)
T cd02962 106 SKQLPTIILFQ--GGKEVARRPY 126 (152)
T ss_pred cCCCCEEEEEE--CCEEEEEEec
Confidence 99999886 7998888886
No 89
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=96.56 E-value=0.005 Score=41.24 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=32.5
Q ss_pred HHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013379 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (444)
Q Consensus 12 ~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (444)
+.|++++++ |-+.+.|+..|..++||++.|++..|+
T Consensus 3 ~~v~~L~~m--Gf~~~~~~~AL~~~~~d~~~A~~~L~~ 38 (38)
T cd00194 3 EKLEQLLEM--GFSREEARKALRATNNNVERAVEWLLE 38 (38)
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 478899998 899999999999999999999987763
No 90
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=96.54 E-value=0.004 Score=41.62 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=30.2
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHH
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQL 46 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~ 46 (444)
++.|.+.+++ |.+.+.|+..|..|+||++.|++.
T Consensus 3 ~~~v~~L~~m--Gf~~~~~~~AL~~~~~nve~A~~~ 36 (37)
T PF00627_consen 3 EEKVQQLMEM--GFSREQAREALRACNGNVERAVDW 36 (37)
T ss_dssp HHHHHHHHHH--TS-HHHHHHHHHHTTTSHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHh
Confidence 4588999999 999999999999999999999974
No 91
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=96.54 E-value=0.0057 Score=48.44 Aligned_cols=72 Identities=17% Similarity=0.097 Sum_probs=42.9
Q ss_pred ceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCceEE
Q 013379 366 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMIS 440 (444)
Q Consensus 366 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v~ 440 (444)
..-|+||-|||...+ ....++++.+|++-|...+ +.+...|.|....++.. .+..+.++||.++||.++.++
T Consensus 4 ~milRvrS~dG~~Ri-e~~~~~t~~~L~~kI~~~l-~~~~~~~~L~~~~~~~~-~l~s~~~~tl~~lglkHGdml 75 (80)
T PF11543_consen 4 SMILRVRSKDGMKRI-EVSPSSTLSDLKEKISEQL-SIPDSSQSLSKDRNNKE-ELKSSDSKTLSSLGLKHGDML 75 (80)
T ss_dssp --EEEEE-SSEEEEE-EE-TTSBHHHHHHHHHHHS----TTT---BSSGGGGG-CSSS-TT-CCCCT---TT-EE
T ss_pred cEEEEEECCCCCEEE-EcCCcccHHHHHHHHHHHc-CCCCcceEEEecCCCCc-ccccCCcCCHHHcCCCCccEE
Confidence 457999999997333 5789999999999999876 44556888887765543 333457899999999966554
No 92
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.52 E-value=0.019 Score=59.82 Aligned_cols=92 Identities=12% Similarity=0.205 Sum_probs=68.2
Q ss_pred HHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCee
Q 013379 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 253 (444)
Q Consensus 177 ~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~ 253 (444)
.+++++++|++++++|..|..+...+ ..+.+.++. ++.+..++.+ +...++..|++..||++.++. .|..
T Consensus 15 i~~~~~~~v~f~a~wC~~c~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~--~g~~ 87 (462)
T TIGR01130 15 IKSHEFVLVEFYAPWCGHCKSLAPEY---EKAADELKKKGPPIKLAKVDAT--EEKDLAQKYGVSGYPTLKIFR--NGED 87 (462)
T ss_pred HhcCCCEEEEEECCCCHHHHhhhHHH---HHHHHHHhhcCCceEEEEEECC--CcHHHHHhCCCccccEEEEEe--CCcc
Confidence 35688999999999999999985432 234444442 3666655554 346789999999999999986 5665
Q ss_pred -eEEEeCCCChHHHHHHHHhhhh
Q 013379 254 -MRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 254 -v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
+....|..+.+.+...+...+.
T Consensus 88 ~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 88 SVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred ceeEecCCCCHHHHHHHHHHhcC
Confidence 6778898888888877776654
No 93
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.49 E-value=0.025 Score=59.34 Aligned_cols=114 Identities=11% Similarity=0.072 Sum_probs=75.6
Q ss_pred HHhhcCCCccC-cccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCChhHHH
Q 013379 153 LASLYRPPFHL-MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKK 230 (444)
Q Consensus 153 l~~~f~pp~~~-~~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~eg~~ 230 (444)
..++|-.+.-+ +-..+|++.+.. +..++++||+++.++|..|+.|...+ +++.+-+.. .+.|..++++..+...
T Consensus 344 ~~dl~~~~~Vv~L~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~---eelA~~~~~~~v~~~kVdvD~~~~~~ 419 (463)
T TIGR00424 344 VADIFDSNNVVSLSRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASY---LELAEKLAGSGVKVAKFRADGDQKEF 419 (463)
T ss_pred cccccCCCCeEECCHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhccCCcEEEEEECCCCccHH
Confidence 35788444322 334568876643 67899999999999999999996432 444444443 3667777777543334
Q ss_pred HHHHcCCCCCcEEEEEeCCCCeeeEEEe-CCCChHHHHHHHH
Q 013379 231 VCTYYKLDSIPVVLVVDPITGQKMRSWC-GMVQPESLLEDLV 271 (444)
Q Consensus 231 ~~~~y~~~~~P~l~ii~p~tg~~v~~~~-G~~~~~~~l~~L~ 271 (444)
.++.|++..||++.++....... .... |.-+.+.|+..+.
T Consensus 420 ~~~~~~I~~~PTii~Fk~g~~~~-~~Y~~g~R~~e~L~~Fv~ 460 (463)
T TIGR00424 420 AKQELQLGSFPTILFFPKHSSRP-IKYPSEKRDVDSLMSFVN 460 (463)
T ss_pred HHHHcCCCccceEEEEECCCCCc-eeCCCCCCCHHHHHHHHH
Confidence 45789999999999997532222 2344 4678887766554
No 94
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.48 E-value=0.029 Score=52.99 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=67.9
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCCh---------hHHHHHHHcCCCCCcEEEEEeC
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS---------EGKKVCTYYKLDSIPVVLVVDP 248 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~---------eg~~~~~~y~~~~~P~l~ii~p 248 (444)
.++|-||++..++|..|+.+. +-|..+-++ +|-++.++.|.. .-...+..+++..+|.+++|+|
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~------pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~ 192 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQA------PILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNP 192 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHH------HHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEEC
Confidence 468999999999999999983 555666653 677777777631 1244677899999999999999
Q ss_pred CCCeeeEEEeCCCChHHHHHHH
Q 013379 249 ITGQKMRSWCGMVQPESLLEDL 270 (444)
Q Consensus 249 ~tg~~v~~~~G~~~~~~~l~~L 270 (444)
.+++..-.-.|.++.++|+.++
T Consensus 193 ~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 193 NTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CCCeEEEEeeecCCHHHHHHhh
Confidence 8878777778999999998875
No 95
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=96.47 E-value=0.0053 Score=40.88 Aligned_cols=36 Identities=22% Similarity=0.414 Sum_probs=32.0
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFY 48 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~ 48 (444)
++.|++++++ |-+.+.|+..|..++||++.|++-.|
T Consensus 2 ~~~v~~L~~m--Gf~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 2 EEKIDQLLEM--GFSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 3578899999 99999999999999999999987653
No 96
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=96.43 E-value=0.021 Score=44.07 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=54.7
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
+|.||..+|+.+..++..++||..|.+.+.... +.+....+|+ |..+. + +.+.||.++|+.+ ++|.+.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~-g~~~~~qrL~--~~g~~--L--~d~~tl~~~~i~~g~~i~l~ 70 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLI--YSGKQ--M--NDDKTAADYKLEGGSVLHLV 70 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhh-CCChhhEEEE--ECCeE--c--cCCCCHHHcCCCCCCEEEEE
Confidence 689999999999999999999999999998764 6667778887 44654 4 4568999999985 555443
No 97
>PTZ00102 disulphide isomerase; Provisional
Probab=96.35 E-value=0.02 Score=60.34 Aligned_cols=97 Identities=10% Similarity=0.223 Sum_probs=70.7
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh---cCEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~---~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
.+|++++ ++++.+||++++++|..|+.+...+ . .+...++ .++.+..++. .+...++..|++..||++
T Consensus 40 ~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~-~--~~a~~~~~~~~~i~~~~vd~--~~~~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 40 STFDKFI----TENEIVLVKFYAPWCGHCKRLAPEY-K--KAAKMLKEKKSEIVLASVDA--TEEMELAQEFGVRGYPTI 110 (477)
T ss_pred hhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHH-H--HHHHHHHhcCCcEEEEEEEC--CCCHHHHHhcCCCcccEE
Confidence 4555544 5678999999999999999886442 1 2333333 2466665554 345678999999999999
Q ss_pred EEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 244 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 244 ~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
.++.. |..+ ...|..+++.|+..|.+.+.
T Consensus 111 ~~~~~--g~~~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 111 KFFNK--GNPV-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred EEEEC--CceE-EecCCCCHHHHHHHHHHhhC
Confidence 99984 5555 77898899998888887654
No 98
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=96.28 E-value=0.032 Score=44.04 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=56.6
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 367 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 367 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
..|-||..+|+.+...+..++||.+|.+-|.... +.+....+|...|.++. | +.+.||.++|+.+ ++|.|.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~-~i~~~~qrL~~~~~G~~--L--~D~~tL~~~gi~~gs~l~l~ 74 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKI-GVPAFQQRLAHLDSREV--L--QDGVPLVSQGLGPGSTVLLV 74 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHh-CCCHHHEEEEeccCCCC--C--CCCCCHHHcCCCCCCEEEEE
Confidence 5789999999999999999999999999998764 56777888865566654 5 3467999999984 556544
No 99
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=96.26 E-value=0.037 Score=58.91 Aligned_cols=86 Identities=13% Similarity=0.058 Sum_probs=61.1
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh----cCEEEEEeec--------------------------CChhH
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYD--------------------------DTSEG 228 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~----~~fV~w~~~~--------------------------~s~eg 228 (444)
.+|++|||+..++|..|...- +.+.++-+ .++.+..+.. .....
T Consensus 55 kGKpVvV~FWATWCppCk~em------P~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~ 128 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSEL------GETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNG 128 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHH------HHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecccc
Confidence 689999999999999998853 23333222 1233332221 01123
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHH
Q 013379 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 271 (444)
Q Consensus 229 ~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~ 271 (444)
..+++.|++..+|+++||++ .|+++....|.++.+++...|.
T Consensus 129 ~~lak~fgV~giPTt~IIDk-dGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 129 GTLAQSLNISVYPSWAIIGK-DGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHHHcCCCCcCeEEEEcC-CCeEEEEEeCCCCHHHHHHHHH
Confidence 45778899999999999997 6999999999999888877666
No 100
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.26 E-value=0.018 Score=51.08 Aligned_cols=77 Identities=10% Similarity=0.230 Sum_probs=48.2
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhcc------C--------------------C-hhHHHHHhcCEEEE-EeecCChhHHH
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTW------A--------------------N-EAVSQTISTNFIFW-QVYDDTSEGKK 230 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~------~--------------------~-~~V~~~l~~~fV~w-~~~~~s~eg~~ 230 (444)
++|+++||+-.++|..|..+...+- . + +.+.+|++..=+.| ........+..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 5789999999999999988643221 0 1 12444444331111 11112222345
Q ss_pred HHHHcCCCCCcEEEEEeCCCCeeeEE
Q 013379 231 VCTYYKLDSIPVVLVVDPITGQKMRS 256 (444)
Q Consensus 231 ~~~~y~~~~~P~l~ii~p~tg~~v~~ 256 (444)
++..|++..+|+++||++ +|.++.+
T Consensus 104 l~~~y~v~~iPt~vlId~-~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKP-DGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECC-CCcEEee
Confidence 777899999999999998 5887755
No 101
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=96.23 E-value=0.046 Score=42.46 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=55.8
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEEe
Q 013379 367 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 443 (444)
Q Consensus 367 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 443 (444)
.+|.||-..|+.+...+..++||.+|.+-|.... +.+...-+|+ |.++. | +.+.||++.|+. +++|.+-|
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~-~~~~~~qrLi--~~Gk~--L--~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQT-GTRPEKIVLK--KWYTI--F--KDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHh-CCChHHEEEE--eCCcC--C--CCCCCHHHcCCCCCCEEEEEe
Confidence 5789999999999999999999999999998764 6677777887 45654 4 446899999998 46665543
No 102
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=96.17 E-value=0.055 Score=45.63 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=54.5
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
.+|++.+. +.+|+++|++++++|..|..+.. +|. .+.+.+++ .+.+..++.+......+++.|++..||++
T Consensus 9 ~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~-~~~--~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~ 82 (114)
T cd02992 9 ASFNSALL---GSPSAWLVEFYASWCGHCRAFAP-TWK--KLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTL 82 (114)
T ss_pred HhHHHHHh---cCCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEE
Confidence 35555554 44589999999999999999854 332 34444443 25555555545556778999999999999
Q ss_pred EEEeCC
Q 013379 244 LVVDPI 249 (444)
Q Consensus 244 ~ii~p~ 249 (444)
.++.+.
T Consensus 83 ~lf~~~ 88 (114)
T cd02992 83 RYFPPF 88 (114)
T ss_pred EEECCC
Confidence 999753
No 103
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=96.10 E-value=0.03 Score=42.72 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=54.5
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEEe
Q 013379 367 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 443 (444)
Q Consensus 367 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 443 (444)
.+|.||.++|+.+..++..+++|..|-+-+.... +.+....+|+. .++. + +.+.||.++|+. ++.|.+.|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gi~~~~q~L~~--~g~~--L--~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEV-GIPVEQQRLIY--SGRV--L--KDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CcCHHHeEEEE--CCEE--C--CCcCcHHHCCCCCCCEEEEEe
Confidence 3789999999999999999999999999998764 54555667764 3442 4 446899999998 56666655
No 104
>PLN02309 5'-adenylylsulfate reductase
Probab=96.01 E-value=0.068 Score=56.07 Aligned_cols=99 Identities=13% Similarity=0.154 Sum_probs=66.1
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecCChhHHHHHH-HcCCCCCcEEEE
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEGKKVCT-YYKLDSIPVVLV 245 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~s~eg~~~~~-~y~~~~~P~l~i 245 (444)
+|++.+. ....+|++||+++.++|..|+.|... |. .+.+-+. .++.|..++.+..+ ..++. .|++..||+|.+
T Consensus 354 nfe~ll~-~~~~~k~vlV~FyApWC~~Cq~m~p~-~e--~LA~~~~~~~V~f~kVD~d~~~-~~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 354 GIENLLK-LENRKEPWLVVLYAPWCPFCQAMEAS-YE--ELAEKLAGSGVKVAKFRADGDQ-KEFAKQELQLGSFPTILL 428 (457)
T ss_pred HHHHHHH-hhcCCCeEEEEEECCCChHHHHHHHH-HH--HHHHHhccCCeEEEEEECCCcc-hHHHHhhCCCceeeEEEE
Confidence 4443333 34689999999999999999998543 22 3444443 45888888877332 34564 699999999999
Q ss_pred EeCCCCeeeEEEe-CCCChHHHHHHHHh
Q 013379 246 VDPITGQKMRSWC-GMVQPESLLEDLVP 272 (444)
Q Consensus 246 i~p~tg~~v~~~~-G~~~~~~~l~~L~~ 272 (444)
+.+.+...+ ... |.-+.+.|+..+..
T Consensus 429 f~~g~~~~v-~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 429 FPKNSSRPI-KYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred EeCCCCCee-ecCCCCcCHHHHHHHHHH
Confidence 975432323 333 35677777776653
No 105
>PTZ00062 glutaredoxin; Provisional
Probab=96.00 E-value=0.096 Score=49.05 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEEEEEe
Q 013379 170 EKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (444)
Q Consensus 170 ~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~ 247 (444)
++.-+..+.....+++|++.+||.+|..++ +-+.++.++ ++.|+.++.+ |++...|+++++.
T Consensus 7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~------~vl~~l~~~~~~~~F~~V~~d----------~~V~~vPtfv~~~ 70 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLM------DVCNALVEDFPSLEFYVVNLA----------DANNEYGVFEFYQ 70 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCcchHHHH------HHHHHHHHHCCCcEEEEEccc----------cCcccceEEEEEE
Confidence 333333333347789999999999999884 444444443 6888877765 9999999999996
Q ss_pred CCCCeeeEEEeCCCChHHHHHHHHhh
Q 013379 248 PITGQKMRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 248 p~tg~~v~~~~G~~~~~~~l~~L~~~ 273 (444)
+|+.+.++.|. ++.++...|...
T Consensus 71 --~g~~i~r~~G~-~~~~~~~~~~~~ 93 (204)
T PTZ00062 71 --NSQLINSLEGC-NTSTLVSFIRGW 93 (204)
T ss_pred --CCEEEeeeeCC-CHHHHHHHHHHH
Confidence 79999999984 466666655544
No 106
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=95.98 E-value=0.04 Score=42.68 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=55.0
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
+|-||.++|+.+.-....++||.+|.+-|... .+.+.....|+.. ++. | +.+.||.++|+. +++|.+.
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~-~gi~~~~q~L~~~--G~~--L--~d~~~L~~~~i~~~~~l~l~ 70 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEH-LNVPEEQQRLLFK--GKA--L--ADDKRLSDYSIGPNAKLNLV 70 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCCCHHHeEEEEC--CEE--C--CCCCCHHHCCCCCCCEEEEE
Confidence 68899999999999999999999999999875 4667778888854 554 5 446999999998 5666554
No 107
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=95.98 E-value=0.055 Score=43.45 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=38.3
Q ss_pred CCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCC-----------------------hhHHHHHHH
Q 013379 180 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDT-----------------------SEGKKVCTY 234 (444)
Q Consensus 180 ~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s-----------------------~eg~~~~~~ 234 (444)
||+++||+.+++|..|..+...+- ++.+-++ .++.+..++.+. ..-..+.+.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~---~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLK---ELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKK 77 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHH---HHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHH---HHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHH
Confidence 567777777777777666532210 1222222 334333333332 223456778
Q ss_pred cCCCCCcEEEEEeCCCCe
Q 013379 235 YKLDSIPVVLVVDPITGQ 252 (444)
Q Consensus 235 y~~~~~P~l~ii~p~tg~ 252 (444)
|++..+|+++||++ +|+
T Consensus 78 ~~i~~iP~~~lld~-~G~ 94 (95)
T PF13905_consen 78 YGINGIPTLVLLDP-DGK 94 (95)
T ss_dssp TT-TSSSEEEEEET-TSB
T ss_pred CCCCcCCEEEEECC-CCC
Confidence 89999999999997 565
No 108
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=95.97 E-value=0.049 Score=46.94 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHH---hc---CEEEEEeecCCh------------------
Q 013379 171 KAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI---ST---NFIFWQVYDDTS------------------ 226 (444)
Q Consensus 171 ~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l---~~---~fV~w~~~~~s~------------------ 226 (444)
+-+..+.-.+|.+||++..++|..|.... +.+.++. ++ ++.+..++.+..
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~------p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~ 81 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFT------PKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP 81 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHH------HHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence 34445555689999999999999998753 3333332 22 354544444432
Q ss_pred -----hHHHHHHHcCCCCCcEEEEEeCCCCeeeEE
Q 013379 227 -----EGKKVCTYYKLDSIPVVLVVDPITGQKMRS 256 (444)
Q Consensus 227 -----eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~ 256 (444)
....+++.|++..+|+++||++ +|+++.+
T Consensus 82 ~~d~~~~~~~~~~~~v~~iPt~~lid~-~G~iv~~ 115 (132)
T cd02964 82 FEDEELRELLEKQFKVEGIPTLVVLKP-DGDVVTT 115 (132)
T ss_pred cCcHHHHHHHHHHcCCCCCCEEEEECC-CCCEEch
Confidence 1235677899999999999996 6876644
No 109
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=95.84 E-value=0.1 Score=41.90 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=57.3
Q ss_pred CCCCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEE
Q 013379 362 DRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMIS 440 (444)
Q Consensus 362 ~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~ 440 (444)
..+..+.|.|+.++|+.+.-+...+++|+.|++-+... .+.+...++|+.. .+. + +.+.|++++|+.. ..|-
T Consensus 7 ~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~-~gi~~~~~rf~f~--G~~--L--~~~~T~~~l~m~d~d~I~ 79 (87)
T cd01763 7 EISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQR-QGLSMNSVRFLFD--GQR--I--RDNQTPDDLGMEDGDEIE 79 (87)
T ss_pred CCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHH-hCCCccceEEEEC--CeE--C--CCCCCHHHcCCCCCCEEE
Confidence 34578999999999999999999999999999987765 3656677777775 443 4 5678999999995 4443
No 110
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=95.80 E-value=0.078 Score=45.28 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=51.3
Q ss_pred cCCeEEEEEeC-------CCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCChh-----HHHHHHHcCCC-CCcE
Q 013379 179 QDKWLLVNLQS-------TKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSE-----GKKVCTYYKLD-SIPV 242 (444)
Q Consensus 179 ~~K~LlVyl~~-------~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s~e-----g~~~~~~y~~~-~~P~ 242 (444)
.+++++|+++. ++|.+|..+ .+.|.++..+ +..|+.++++... ...++..|++. .+|+
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~------~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT 93 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKA------EPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPT 93 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhh------chhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCE
Confidence 57899999999 899999986 3556555543 6788888887632 46788899998 9999
Q ss_pred EEEEeCCCCe
Q 013379 243 VLVVDPITGQ 252 (444)
Q Consensus 243 l~ii~p~tg~ 252 (444)
++++. +|.
T Consensus 94 ~~~~~--~~~ 101 (119)
T cd02952 94 LLRWK--TPQ 101 (119)
T ss_pred EEEEc--CCc
Confidence 99995 454
No 111
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.066 Score=52.34 Aligned_cols=99 Identities=19% Similarity=0.214 Sum_probs=74.0
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHH---hcCEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI---STNFIFWQVYDDTSEGKKVCTYYKLDSIPV 242 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l---~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~ 242 (444)
.-+|++.+.++.+ .+|+|||+.+++|..|..|- +.+..+. +..|++-.++.+. -..++..+++.+.|+
T Consensus 30 ~anfe~~V~~~S~-~~PVlV~fWap~~~~c~qL~------p~Lekla~~~~G~f~LakvN~D~--~p~vAaqfgiqsIPt 100 (304)
T COG3118 30 EANFEQEVIQSSR-EVPVLVDFWAPWCGPCKQLT------PTLEKLAAEYKGKFKLAKVNCDA--EPMVAAQFGVQSIPT 100 (304)
T ss_pred HhHHHHHHHHHcc-CCCeEEEecCCCCchHHHHH------HHHHHHHHHhCCceEEEEecCCc--chhHHHHhCcCcCCe
Confidence 3466776665543 47999999999999999985 3344444 4579998777655 467899999999999
Q ss_pred EEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 243 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 243 l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
++.+. .|+.|.-+.|....+.+-..|.+++.
T Consensus 101 V~af~--dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 101 VYAFK--DGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred EEEee--CCcCccccCCCCcHHHHHHHHHHhcC
Confidence 98876 69999888887776666665555544
No 112
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.74 E-value=0.16 Score=47.13 Aligned_cols=80 Identities=19% Similarity=0.386 Sum_probs=56.4
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
.+|.+.+..| ..++|++|+++.++|..|..|+ +.+..+-.. ...|..++++. .+..|++..+|+++
T Consensus 90 ~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~------~~l~~LA~k~~~vkFvkI~ad~-----~~~~~~i~~lPTll 157 (192)
T cd02988 90 PDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLN------QHLSELARKFPDTKFVKIISTQ-----CIPNYPDKNLPTIL 157 (192)
T ss_pred HHHHHHHHhc-CCCCEEEEEEECCCCchHHHHH------HHHHHHHHHCCCCEEEEEEhHH-----hHhhCCCCCCCEEE
Confidence 3444444332 1246999999999999999985 344444443 34566666642 36789999999999
Q ss_pred EEeCCCCeeeEEEeCC
Q 013379 245 VVDPITGQKMRSWCGM 260 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~ 260 (444)
|+- +|+++.++.|.
T Consensus 158 iyk--~G~~v~~ivG~ 171 (192)
T cd02988 158 VYR--NGDIVKQFIGL 171 (192)
T ss_pred EEE--CCEEEEEEeCc
Confidence 996 79999888874
No 113
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=95.67 E-value=0.13 Score=46.26 Aligned_cols=93 Identities=16% Similarity=0.216 Sum_probs=61.4
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHH----hcCEEEEEeecCCh--------hH------------------
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTS--------EG------------------ 228 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l----~~~fV~w~~~~~s~--------eg------------------ 228 (444)
.+|++|||+..++|..|...- +.+.++. +.++.++++..+.. +.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~------~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~ 97 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIE------DRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDE 97 (171)
T ss_pred CCCEEEEEEECCCCccHHHHH------HHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECC
Confidence 578888988888888775432 2223322 24677777766531 11
Q ss_pred -HHHHHHcCCCCCcEEEEEeCCCCeeeEEE------e---CCCChHHHHHHHHhhhhcCC
Q 013379 229 -KKVCTYYKLDSIPVVLVVDPITGQKMRSW------C---GMVQPESLLEDLVPFMDGGP 278 (444)
Q Consensus 229 -~~~~~~y~~~~~P~l~ii~p~tg~~v~~~------~---G~~~~~~~l~~L~~~l~~~~ 278 (444)
..++..|++...|+++||++ +|+++... . +..+.+++...|...+...+
T Consensus 98 ~~~~~~~~~v~~~P~~~lid~-~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 98 TQEVAKAYGAACTPDFFLFDP-DGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred chHHHHHcCCCcCCcEEEECC-CCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 23456788888999999997 68877553 1 12466788888888877654
No 114
>PTZ00102 disulphide isomerase; Provisional
Probab=95.64 E-value=0.053 Score=57.06 Aligned_cols=101 Identities=14% Similarity=0.155 Sum_probs=71.6
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
..+|++++ .+.+|++||++++++|..|+.+.. +|. .+..... .++++..++.+..+ ..+..|++..+|++
T Consensus 364 ~~~f~~~v---~~~~k~vlv~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~v~~~~id~~~~~--~~~~~~~v~~~Pt~ 435 (477)
T PTZ00102 364 GNTFEEIV---FKSDKDVLLEIYAPWCGHCKNLEP-VYN--ELGEKYKDNDSIIVAKMNGTANE--TPLEEFSWSAFPTI 435 (477)
T ss_pred ccchHHHH---hcCCCCEEEEEECCCCHHHHHHHH-HHH--HHHHHhccCCcEEEEEEECCCCc--cchhcCCCcccCeE
Confidence 34666543 467899999999999999998842 333 2222233 35777766665433 35778899999999
Q ss_pred EEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 244 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 244 ~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
.++.+ ++.+...+.|..+.+.+...|.....
T Consensus 436 ~~~~~-~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 436 LFVKA-GERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred EEEEC-CCcceeEecCcCCHHHHHHHHHHcCC
Confidence 99985 34444578899999888888777654
No 115
>PTZ00044 ubiquitin; Provisional
Probab=95.58 E-value=0.071 Score=41.32 Aligned_cols=68 Identities=18% Similarity=0.305 Sum_probs=54.8
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
.|-||.++|+.++-++..++||.+|-.-|.... +.+....+|+ |-.+. + +.+.||++.|+. +++|.+.
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~-gi~~~~q~L~--~~g~~--L--~d~~~l~~~~i~~~~~i~l~ 70 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKE-GIDVKQIRLI--YSGKQ--M--SDDLKLSDYKVVPGSTIHMV 70 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CCCHHHeEEE--ECCEE--c--cCCCcHHHcCCCCCCEEEEE
Confidence 588999999999999999999999999998863 6667778888 44654 4 457899999998 4556554
No 116
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=95.53 E-value=0.13 Score=44.28 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=29.7
Q ss_pred HHHHHcCCCCC---------cEEEEEeCCCCeeeEEEeCCCChHHHHHH
Q 013379 230 KVCTYYKLDSI---------PVVLVVDPITGQKMRSWCGMVQPESLLED 269 (444)
Q Consensus 230 ~~~~~y~~~~~---------P~l~ii~p~tg~~v~~~~G~~~~~~~l~~ 269 (444)
.++..|++..+ |+.+|||+ +|+++.++.|......+-+.
T Consensus 91 ~~~~~~gv~~~~~~~~~~~~p~~~lid~-~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 91 KLAKAYGVWGEKKKKYMGIERSTFLIDP-DGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred HHHHHhCCccccccccCCcceeEEEECC-CCEEEEEEecCCccchHHHH
Confidence 45667887776 89999996 69999999998765555444
No 117
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=95.46 E-value=0.057 Score=41.55 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=52.3
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 369 VGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 369 i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
+.||+++|+.+.-.+..++||.+|-+.|... .+.+....+|+. -++. | +.+.||.++|+.+ ++|.|
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~-~gi~~~~q~Li~--~G~~--L--~D~~~l~~~~i~~~~tv~~ 67 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAA-EGVDPCCQRWFF--SGKL--L--TDKTRLQETKIQKDYVVQV 67 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHH-hCCCHHHeEEEE--CCeE--C--CCCCCHHHcCCCCCCEEEE
Confidence 3589999999999999999999999999875 466677778874 3553 4 5579999999985 55533
No 118
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.45 E-value=0.11 Score=48.89 Aligned_cols=89 Identities=10% Similarity=0.115 Sum_probs=63.5
Q ss_pred cCCeEEEEEe--CCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeee
Q 013379 179 QDKWLLVNLQ--STKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 254 (444)
Q Consensus 179 ~~K~LlVyl~--~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v 254 (444)
.++-++++.+ .+||..|+.+. +-+.++... +.-+..++++..+...++..|++..+|+++++. .|+.+
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~------p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~--~g~~~ 90 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETE------QLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILE--EGKDG 90 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHH------HHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEe--CCeee
Confidence 4566666666 38999999874 334343332 232334577777889999999999999999987 57766
Q ss_pred -EEEeCCCChHHHHHHHHhhhh
Q 013379 255 -RSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 255 -~~~~G~~~~~~~l~~L~~~l~ 275 (444)
.+..|..+.++|...|...+.
T Consensus 91 ~~~~~G~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 91 GIRYTGIPAGYEFAALIEDIVR 112 (215)
T ss_pred EEEEeecCCHHHHHHHHHHHHH
Confidence 488898888887777766654
No 119
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.43 E-value=0.086 Score=61.17 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=69.2
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh----cCEEEEEeec---CC---hh-------------------HH
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYD---DT---SE-------------------GK 229 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~----~~fV~w~~~~---~s---~e-------------------g~ 229 (444)
.+|++||++..++|..|... .|.+.++-+ .+|+++++.. +. .+ ..
T Consensus 419 kGK~vll~FWAsWC~pC~~e------~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~ 492 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHV------LPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDM 492 (1057)
T ss_pred CCCEEEEEEECCcChhHHhH------hHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCch
Confidence 58999999999999999874 355555443 2477777642 11 11 12
Q ss_pred HHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcCC
Q 013379 230 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGP 278 (444)
Q Consensus 230 ~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~~ 278 (444)
.+...|++..+|+++||++ +|+++.++.|....+.+...|...+..|.
T Consensus 493 ~~~~~~~V~~iPt~ilid~-~G~iv~~~~G~~~~~~l~~~l~~~l~~~~ 540 (1057)
T PLN02919 493 YLWRELGVSSWPTFAVVSP-NGKLIAQLSGEGHRKDLDDLVEAALQYYG 540 (1057)
T ss_pred HHHHhcCCCccceEEEECC-CCeEEEEEecccCHHHHHHHHHHHHHhhc
Confidence 4567789999999999997 69999999998888888888877776443
No 120
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=95.39 E-value=0.13 Score=44.76 Aligned_cols=115 Identities=10% Similarity=0.041 Sum_probs=73.2
Q ss_pred cchHHHHHhhcCCCccCcccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHH----HHh-cCEEEEEe
Q 013379 147 DSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQ----TIS-TNFIFWQV 221 (444)
Q Consensus 147 ~~~~~~l~~~f~pp~~~~~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~----~l~-~~fV~w~~ 221 (444)
++.-++|.. +|- +..-..++++-+. .....+|.+.++-.-. -+++-..-|.. -.. ..+.+..+
T Consensus 8 ~~l~~rl~~-~g~--~~~~~~~~~~~~~----~~~~~vl~~~gdp~r~-----~E~~D~avvleELa~e~~~~~v~~akV 75 (132)
T PRK11509 8 DALWQRMLA-RGW--TPVSESRLDDWLT----QAPDGVVLLSSDPKRT-----PEVSDNPVMIGELLREFPDYTWQVAIA 75 (132)
T ss_pred HHHHHHHHH-cCC--CccccccHHHHHh----CCCcEEEEeCCCCCcC-----CccccHHHHHHHHHHHhcCCceEEEEE
Confidence 345566666 333 3344556665552 2334556666642100 01112222222 223 23667766
Q ss_pred ecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 222 YDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 222 ~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
+.+ +...++..|++.++|+++++. +|+.+.++.|..+.+++++.|..++++-
T Consensus 76 DiD--~~~~LA~~fgV~siPTLl~Fk--dGk~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 76 DLE--QSEAIGDRFGVFRFPATLVFT--GGNYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred ECC--CCHHHHHHcCCccCCEEEEEE--CCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 665 447889999999999999997 7999999999999999999999988754
No 121
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=95.39 E-value=0.11 Score=40.86 Aligned_cols=67 Identities=13% Similarity=0.209 Sum_probs=52.6
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEE
Q 013379 367 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 441 (444)
Q Consensus 367 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v 441 (444)
.+|-||...|+...-.+..++||.+|..-|.... +.+....+|+ |.++. |. | + ||+++|+. +++|.+
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~-~~~~~~qrL~--~~Gk~--L~-d-~-~L~~~gi~~~~~i~l 69 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRL-KVPKERLALL--HRETR--LS-S-G-KLQDLGLGDGSKLTL 69 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHh-CCChHHEEEE--ECCcC--CC-C-C-cHHHcCCCCCCEEEE
Confidence 4789999999999999999999999999998764 5566677776 55664 53 3 4 89999998 455544
No 122
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=95.35 E-value=0.19 Score=46.16 Aligned_cols=86 Identities=10% Similarity=0.134 Sum_probs=64.6
Q ss_pred EEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCCh-----------hHHHHHHHcCC--CCCcEEEEEeCC
Q 013379 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS-----------EGKKVCTYYKL--DSIPVVLVVDPI 249 (444)
Q Consensus 184 lVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~-----------eg~~~~~~y~~--~~~P~l~ii~p~ 249 (444)
||++..++|..|..+ .+.++++-++ .|.+++++.+.. .+..+...|++ ..+|+.+||++
T Consensus 73 lV~FwaswCp~C~~e------~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~- 145 (181)
T PRK13728 73 VVLFMQGHCPYCHQF------DPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNV- 145 (181)
T ss_pred EEEEECCCCHhHHHH------HHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeC-
Confidence 677888999999986 3566666654 688887776633 12346678885 58999999997
Q ss_pred CCeee-EEEeCCCChHHHHHHHHhhhhc
Q 013379 250 TGQKM-RSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 250 tg~~v-~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
.|.++ ....|.++.+++...+...+..
T Consensus 146 ~G~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 146 NTLEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred CCcEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 57664 5788999999998888877754
No 123
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=95.29 E-value=0.1 Score=40.26 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=53.5
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
+|-||.++|+.+.-.+..++||.+|..-|.... +.+.....|. |..+. + +.+.||.++|+.+ ++|.+.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~-g~~~~~q~L~--~~g~~--L--~d~~~L~~~~i~~~~~i~l~ 70 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLI--FAGKQ--L--EDGRTLSDYNIQKESTLHLV 70 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHh-CCCHHHeEEE--ECCEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 588999999999999999999999999998863 5555667777 44553 4 4468999999985 556554
No 124
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=95.09 E-value=0.26 Score=45.41 Aligned_cols=88 Identities=14% Similarity=0.201 Sum_probs=53.0
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCChh------------------HHHHHHHcC
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSE------------------GKKVCTYYK 236 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s~e------------------g~~~~~~y~ 236 (444)
..+|+++||+.+++|..|...- +.+.++-++ ++++. ..++.+ ...++..|+
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~l------p~l~~~~~~~~~~vv~I--s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~ 143 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLF------PIIKSIARAEETDVVMI--SDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQ 143 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHH------HHHHHHHHhcCCcEEEE--eCCCHHHHHHHHHhcCCCcceeechhHHHHhcc
Confidence 3578899999999998887653 223332221 23333 222211 134567788
Q ss_pred CCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhc
Q 013379 237 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 237 ~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
+..+|+.+|||+ .|+++.+ |.....+-++.|...++.
T Consensus 144 v~~~P~~~lID~-~G~I~~~--g~~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 144 VGKIPYGVLLDQ-DGKIRAK--GLTNTREHLESLLEADRE 180 (189)
T ss_pred CCccceEEEECC-CCeEEEc--cCCCCHHHHHHHHHHHHc
Confidence 999999999997 5887654 554444445555555443
No 125
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=95.08 E-value=0.19 Score=41.64 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=39.8
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCC-hhHHHHHH-----------------HcCCCCC
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SEGKKVCT-----------------YYKLDSI 240 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s-~eg~~~~~-----------------~y~~~~~ 240 (444)
++|+++|++.+++|..|......+ ..+.+.....+.++.+..++ .+...+++ .|++..+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l---~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 96 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVI---RSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKL 96 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHH---HHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCc
Confidence 478999999999998888764321 11222223344444443333 23333443 4555566
Q ss_pred cEEEEEeCCCCeee
Q 013379 241 PVVLVVDPITGQKM 254 (444)
Q Consensus 241 P~l~ii~p~tg~~v 254 (444)
|+.+||++ .|+++
T Consensus 97 P~~~vid~-~G~v~ 109 (114)
T cd02967 97 PYAVLLDE-AGVIA 109 (114)
T ss_pred CeEEEECC-CCeEE
Confidence 77777775 45543
No 126
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=94.99 E-value=0.14 Score=39.68 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=51.7
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCC--CCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGS--EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~--~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
+|-||.++|+.+.-....++||..|...+.... +. +.....|+. .++. | +.+.||.++|+.+ +.|++
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~-~i~~~~~~q~L~~--~G~~--L--~d~~~L~~~~i~~~~~i~~ 71 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEK-GCDYPPEQQKLIY--SGKI--L--KDDTTLEEYKIDEKDFVVV 71 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhh-CCCCChhHeEEEE--CCEE--c--cCCCCHHHcCCCCCCEEEE
Confidence 688999999999999999999999999998753 43 555667764 4654 5 3468999999985 44543
No 127
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=94.91 E-value=0.13 Score=43.33 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=48.2
Q ss_pred ceEEEEECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCC------CCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC
Q 013379 366 LCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGS------EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN 436 (444)
Q Consensus 366 ~~~i~iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~------~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~ 436 (444)
.+.|+|||.||+ +..-+|..++||.+|-+.|...++.. .....+|+.. +|. | +.+.||.++++..
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~--Gri--L--~d~~tL~~~~~~~ 73 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYA--GRI--L--EDNKTLSDCRLPS 73 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEET--TEE--E---SSSBTGGGT--T
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeC--Cee--c--CCcCcHHHhCCCC
Confidence 578999999999 89999999999999999999887532 2344777775 442 4 5689999999873
No 128
>PTZ00056 glutathione peroxidase; Provisional
Probab=94.90 E-value=0.25 Score=46.00 Aligned_cols=89 Identities=11% Similarity=0.134 Sum_probs=59.2
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh----cCEEEEEeec--------CC-hhHHHHHHHcCCCCCc----
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYD--------DT-SEGKKVCTYYKLDSIP---- 241 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~----~~fV~w~~~~--------~s-~eg~~~~~~y~~~~~P---- 241 (444)
.+|++||++..++|..|..- -+.+.++.+ .++.+++++. ++ .+...++..+++ .||
T Consensus 38 kGkvvlv~fwAswC~~C~~e------~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~-~fpvl~d 110 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKH------VDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKI-KYNFFEP 110 (199)
T ss_pred CCCEEEEEEECCCCCChHHH------HHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCC-Cceeeee
Confidence 58999999999999888642 133444433 3577787764 22 335556655543 122
Q ss_pred ------------------------------------EEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 242 ------------------------------------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 242 ------------------------------------~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
..+|||+ .|+++.++.|..+++++...|...+.
T Consensus 111 ~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~-~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 111 IEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNK-SGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred eeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECC-CCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3567775 78888888888888887777776665
No 129
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=94.85 E-value=0.15 Score=38.76 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=52.6
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 367 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 367 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
++|.||.. |+....++..++||.+|.+-+... .+.+....+|... ++. + +.+.||.++|+.+ ..|.|.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~-~gi~~~~q~L~~~--g~~--l--~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPV-TGVEPRDQKLIFK--GKE--R--DDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHh-hCCChHHeEEeeC--Ccc--c--CccCcHHHcCCCCCCEEEEe
Confidence 47889997 888899999999999999999875 4666777888754 443 4 3478999999985 555543
No 130
>PHA02125 thioredoxin-like protein
Probab=94.85 E-value=0.18 Score=38.96 Aligned_cols=72 Identities=17% Similarity=0.287 Sum_probs=50.4
Q ss_pred EEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCC-C
Q 013379 183 LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM-V 261 (444)
Q Consensus 183 LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~-~ 261 (444)
++|+++.++|..|..+..- |. + + .|.+. +++..+...++..|++..+|++. .|+.+..+.|. .
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~-l~-----~-~--~~~~~--~vd~~~~~~l~~~~~v~~~PT~~-----~g~~~~~~~G~~~ 64 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPM-LA-----N-V--EYTYV--DVDTDEGVELTAKHHIRSLPTLV-----NTSTLDRFTGVPR 64 (75)
T ss_pred CEEEEECCCCHhHHHHHHH-HH-----H-H--hheEE--eeeCCCCHHHHHHcCCceeCeEE-----CCEEEEEEeCCCC
Confidence 3789999999999988643 21 1 1 24455 44445567899999999999986 47788888885 2
Q ss_pred ChHHHHHHH
Q 013379 262 QPESLLEDL 270 (444)
Q Consensus 262 ~~~~~l~~L 270 (444)
+..++.+.|
T Consensus 65 ~~~~l~~~~ 73 (75)
T PHA02125 65 NVAELKEKL 73 (75)
T ss_pred cHHHHHHHh
Confidence 445555544
No 131
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=94.81 E-value=0.19 Score=42.81 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=47.8
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh----cCEEEEEeec------CChhH-------------------H
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYD------DTSEG-------------------K 229 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~----~~fV~w~~~~------~s~eg-------------------~ 229 (444)
.+|+++||+.+.+|..|.... +.+.++.+ .++.++++.. ++.+. .
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~------p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~ 95 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTL------PYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDY 95 (126)
T ss_pred CCCEEEEEEECCCCccHHHHH------HHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCch
Confidence 568888888888888776542 33333332 3456665543 11221 2
Q ss_pred HHHHHcCCCCCcEEEEEeCCCCeeeEEEeC
Q 013379 230 KVCTYYKLDSIPVVLVVDPITGQKMRSWCG 259 (444)
Q Consensus 230 ~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G 259 (444)
.+...|++..+|+.+||++ .|+++.+..|
T Consensus 96 ~~~~~~~v~~~P~~~vid~-~G~v~~~~~G 124 (126)
T cd03012 96 ATWRAYGNQYWPALYLIDP-TGNVRHVHFG 124 (126)
T ss_pred HHHHHhCCCcCCeEEEECC-CCcEEEEEec
Confidence 3445678888999999997 5888888776
No 132
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=94.77 E-value=0.15 Score=38.99 Aligned_cols=66 Identities=20% Similarity=0.258 Sum_probs=52.8
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEE
Q 013379 369 VGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 441 (444)
Q Consensus 369 i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v 441 (444)
|-||.++|+.+.-....+++|..|-..|.... +.+.....|+.. ++. | +.+.||.++|+. +++|.+
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gi~~~~q~Li~~--G~~--L--~d~~~l~~~~i~~~stl~l 67 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQ-GVPPDQLRVIFA--GKE--L--RNTTTIQECDLGQQSILHA 67 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHH-CCCHHHeEEEEC--CeE--C--CCCCcHHHcCCCCCCEEEE
Confidence 45899999999999999999999999998863 556677888754 554 4 456999999998 566644
No 133
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=94.65 E-value=0.15 Score=39.51 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=53.2
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 369 VGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 369 i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
|-||.++|+.+.-....+++|..|.+-|... .+.+...+.|+.. ++. | ..+.||.+.|+. +++|.+.
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-~gi~~~~q~L~~~--G~~--L--~D~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQR-ERVQADQFWLSFE--GRP--M--EDEHPLGEYGLKPGCTVFMN 68 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHH-hCCCHHHeEEEEC--CEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 4689999999999999999999999999875 4667778888854 553 5 346899999998 4556443
No 134
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=94.39 E-value=0.11 Score=43.47 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=48.7
Q ss_pred CceEEEEECCCCce-EEEEeCCCCchHHHHHHHHhhcC-C-----CCCcCeEEEcCCCCCcccCCCCcCCChhhcCC
Q 013379 365 LLCRVGVRLPDGRR-MQRNFLRTDPIQLLWSYCYSQLE-G-----SEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL 434 (444)
Q Consensus 365 ~~~~i~iRlP~G~r-~~rrF~~~~~l~~l~~fv~~~~~-~-----~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL 434 (444)
..+.|+|||+||+- =-.+|..++||.+|-+-|....+ + +....-+|+.. +|. | +.++||+++++
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIys--GKi--L--eD~~TL~d~~~ 73 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISA--GKI--L--ENSKTVGECRS 73 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeC--Cee--c--CCCCcHHHhCC
Confidence 46789999999964 45789999999999999987654 2 33445666664 553 4 56799999993
No 135
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=94.30 E-value=0.16 Score=38.98 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=52.0
Q ss_pred EEEECC-CCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCceEE
Q 013379 369 VGVRLP-DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMIS 440 (444)
Q Consensus 369 i~iRlP-~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v~ 440 (444)
|-||++ +|+.+.-....+++|.+|-..|... .+.+.....|+.. .+. | .|...+|+++|+.+..++
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~-~gip~~~q~Li~~--Gk~--L-~D~~~~L~~~gi~~~~~l 67 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAE-SGIPASQQQLIYN--GRE--L-VDNKRLLALYGVKDGDLV 67 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHH-hCCCHHHeEEEEC--CeE--c-cCCcccHHHcCCCCCCEE
Confidence 457899 9998999999999999999999875 4667777888865 553 5 355689999999865543
No 136
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=94.14 E-value=0.2 Score=37.84 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=50.1
Q ss_pred ECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCceE
Q 013379 372 RLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMI 439 (444)
Q Consensus 372 RlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v 439 (444)
|..+|+.+.-.+..+++|.+|-.-|.... +.+.....|+.+ ++. | +.+.||.++|+.+.++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~~~~~~~~L~~~--G~~--L--~d~~tL~~~~i~~~~~ 61 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEET-GIPPEQQRLIYN--GKE--L--DDDKTLSDYGIKDGST 61 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHH-TSTGGGEEEEET--TEE--E--STTSBTGGGTTSTTEE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhccccc-ccccccceeeee--eec--c--cCcCcHHHcCCCCCCE
Confidence 56899999999999999999999999875 567778888874 443 4 6789999999996553
No 137
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=94.06 E-value=0.35 Score=40.17 Aligned_cols=71 Identities=8% Similarity=0.084 Sum_probs=57.9
Q ss_pred CceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 365 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
+...|-||..+|+.+.-....++||.+|.+.|... .+.+....+|+.. ++. | +.+.||++.|+. +++|.+.
T Consensus 26 ~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~-~gip~~~QrLi~~--Gk~--L--~D~~tL~dy~I~~~stL~l~ 97 (103)
T cd01802 26 DTMELFIETLTGTCFELRVSPFETVISVKAKIQRL-EGIPVAQQHLIWN--NME--L--EDEYCLNDYNISEGCTLKLV 97 (103)
T ss_pred CCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH-hCCChHHEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 46899999999999999999999999999999875 4667778889854 553 4 456899999998 5666554
No 138
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=94.04 E-value=0.71 Score=35.60 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=52.1
Q ss_pred EEEeCCCchhhHHHHhhccCChhHHHHH---hcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCC
Q 013379 185 VNLQSTKEFSSHMLNRDTWANEAVSQTI---STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV 261 (444)
Q Consensus 185 Vyl~~~~~~~~~~f~rdv~~~~~V~~~l---~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~ 261 (444)
+-+++++|..|..+. +.+.++. +.++-+..++.+ +....+..|++..+|++.+ .|+ .++.|..
T Consensus 4 ~~f~~~~C~~C~~~~------~~l~~l~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~vPt~~~----~g~--~~~~G~~ 69 (82)
T TIGR00411 4 ELFTSPTCPYCPAAK------RVVEEVAKEMGDAVEVEYINVM--ENPQKAMEYGIMAVPAIVI----NGD--VEFIGAP 69 (82)
T ss_pred EEEECCCCcchHHHH------HHHHHHHHHhcCceEEEEEeCc--cCHHHHHHcCCccCCEEEE----CCE--EEEecCC
Confidence 345678899999874 3333333 334666666654 3446778899999999975 354 2688988
Q ss_pred ChHHHHHHHHhh
Q 013379 262 QPESLLEDLVPF 273 (444)
Q Consensus 262 ~~~~~l~~L~~~ 273 (444)
+++++...|..+
T Consensus 70 ~~~~l~~~l~~~ 81 (82)
T TIGR00411 70 TKEELVEAIKKR 81 (82)
T ss_pred CHHHHHHHHHhh
Confidence 999988887765
No 139
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=94.00 E-value=0.55 Score=39.88 Aligned_cols=92 Identities=21% Similarity=0.234 Sum_probs=62.1
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeC--CCch---hhHHHHhhccCChhHHHHHhcCEEEEEeecCC---hhHHHHHHHcCCC
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQS--TKEF---SSHMLNRDTWANEAVSQTISTNFIFWQVYDDT---SEGKKVCTYYKLD 238 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~--~~~~---~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s---~eg~~~~~~y~~~ 238 (444)
.+|++++ ++.+.+||-++. ++|- .|..|....-.. ....++=.++.+. ++-..++..|+|.
T Consensus 9 ~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~a-------a~~v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 9 VTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASA-------TDDLLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred hhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhh-------cCceEEEEEecccccchhhHHHHHHhCCC
Confidence 4555544 677899999999 7776 555553221110 1247777777754 5558899999999
Q ss_pred --CCcEEEEEeCCCCe--eeEEEeCC-CChHHHHHHHH
Q 013379 239 --SIPVVLVVDPITGQ--KMRSWCGM-VQPESLLEDLV 271 (444)
Q Consensus 239 --~~P~l~ii~p~tg~--~v~~~~G~-~~~~~~l~~L~ 271 (444)
.||+|.+... |. ......|. .+.+.++..+.
T Consensus 78 ~~gyPTl~lF~~--g~~~~~~~Y~G~~r~~~~lv~~v~ 113 (116)
T cd03007 78 KESYPVIYLFHG--GDFENPVPYSGADVTVDALQRFLK 113 (116)
T ss_pred cCCCCEEEEEeC--CCcCCCccCCCCcccHHHHHHHHH
Confidence 9999998873 42 33456786 88888877654
No 140
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=93.91 E-value=0.32 Score=50.65 Aligned_cols=97 Identities=11% Similarity=0.130 Sum_probs=69.3
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPV 242 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s~eg~~~~~~y~~~~~P~ 242 (444)
..+|.+.+ ...++.+||+++.++|..|..|...+ ..+.+.++. ++.+..++.+..+ +.. |++..+|+
T Consensus 353 ~~~f~~~v---~~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~i~~~~id~~~n~---~~~-~~i~~~Pt 422 (462)
T TIGR01130 353 GKNFDEIV---LDETKDVLVEFYAPWCGHCKNLAPIY---EELAEKYKDAESDVVIAKMDATAND---VPP-FEVEGFPT 422 (462)
T ss_pred CcCHHHHh---ccCCCeEEEEEECCCCHhHHHHHHHH---HHHHHHhhcCCCcEEEEEEECCCCc---cCC-CCccccCE
Confidence 45777664 34689999999999999999885432 445555665 6888888887654 333 89999999
Q ss_pred EEEEeCCCCe-eeEEEeCCCChHHHHHHHHhh
Q 013379 243 VLVVDPITGQ-KMRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 243 l~ii~p~tg~-~v~~~~G~~~~~~~l~~L~~~ 273 (444)
+.+... ++. ......|..+.+.++..|.+.
T Consensus 423 ~~~~~~-~~~~~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 423 IKFVPA-GKKSEPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred EEEEeC-CCCcCceEecCcCCHHHHHHHHHhc
Confidence 999963 223 234567878888777766554
No 141
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=93.88 E-value=0.38 Score=36.76 Aligned_cols=68 Identities=10% Similarity=0.191 Sum_probs=52.2
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEEe
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 443 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 443 (444)
+|-||.++|+ ..-.+..++||..|..-|.... +.+...++|+. .++. | +.+.||.++|+. +++|.+.+
T Consensus 2 ~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~-~i~~~~~~Li~--~Gk~--L--~d~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 2 KVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKF-KANQEQLVLIF--AGKI--L--KDTDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred EEEEEcCCCC-EEEEECCCChHHHHHHHHHHHh-CCCHHHEEEEE--CCeE--c--CCCCcHHHcCCCCCCEEEEEE
Confidence 6889999996 5778889999999999998764 55667788864 4654 5 346799999998 56666554
No 142
>PLN02412 probable glutathione peroxidase
Probab=93.86 E-value=0.37 Score=43.47 Aligned_cols=35 Identities=11% Similarity=0.256 Sum_probs=28.7
Q ss_pred CcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 240 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 240 ~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
.|+.+||++ .|+++.++.|..+++++...|...+.
T Consensus 131 ~p~tflId~-~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 131 NFTKFLVSK-EGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCeeEEECC-CCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 478888886 69999999999999888877776654
No 143
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=93.83 E-value=0.75 Score=44.11 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=28.9
Q ss_pred CcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 240 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 240 ~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
.|..+|||+ .|+++.++.|.++++++...|...+
T Consensus 201 ~PttfLIDk-~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 201 NFEKFLVDK-NGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred CceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHh
Confidence 588999996 7999999999999988877777665
No 144
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=93.74 E-value=0.97 Score=41.73 Aligned_cols=90 Identities=14% Similarity=0.181 Sum_probs=56.7
Q ss_pred cCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhH-----------------------HHHHHH
Q 013379 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-----------------------KKVCTY 234 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg-----------------------~~~~~~ 234 (444)
.+||++|+++ ..+|+.|..=...+ ++...+|-+.++.+++++.++.+. ..++..
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l--~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ 107 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDV--ADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN 107 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHH--HHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHH
Confidence 5688888888 67777766522211 223333434567777777777543 245667
Q ss_pred cCC----CCC--cEEEEEeCCCCeeeEEEeCC----CChHHHHHHHH
Q 013379 235 YKL----DSI--PVVLVVDPITGQKMRSWCGM----VQPESLLEDLV 271 (444)
Q Consensus 235 y~~----~~~--P~l~ii~p~tg~~v~~~~G~----~~~~~~l~~L~ 271 (444)
|++ ..+ |..+|||+ .|.+...+... .+.++++..|.
T Consensus 108 ygv~~~~~g~~~r~tfIID~-~G~I~~~~~~~~~~~~~~~eil~~l~ 153 (187)
T PRK10382 108 FDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIK 153 (187)
T ss_pred cCCCcccCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 776 245 99999997 68876665432 36777777664
No 145
>PRK15000 peroxidase; Provisional
Probab=93.50 E-value=0.98 Score=42.12 Aligned_cols=91 Identities=9% Similarity=0.021 Sum_probs=57.1
Q ss_pred cCCeEEEEEeCC-CchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHH--------------------------HH
Q 013379 179 QDKWLLVNLQST-KEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK--------------------------KV 231 (444)
Q Consensus 179 ~~K~LlVyl~~~-~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~--------------------------~~ 231 (444)
.+||++|+++.. .|+.|..=...+ +....+|-+.++.+++++.++.+.. .+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l--~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~i 110 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAF--DKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREI 110 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHH
Confidence 578888888874 567766532111 1223333345777888777765431 23
Q ss_pred HHHcCCC------CCcEEEEEeCCCCeeeEEEeCCC----ChHHHHHHHHh
Q 013379 232 CTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVP 272 (444)
Q Consensus 232 ~~~y~~~------~~P~l~ii~p~tg~~v~~~~G~~----~~~~~l~~L~~ 272 (444)
++.|++. .+|..+||+| .|.+...+.|.. +.++++..|..
T Consensus 111 a~~ygv~~~~~g~~~r~tfiID~-~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 111 QKAYGIEHPDEGVALRGSFLIDA-NGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HHHcCCccCCCCcEEeEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 4557765 5899999998 588777766643 56777766643
No 146
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=93.44 E-value=0.65 Score=40.34 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=26.5
Q ss_pred HHHHHHcCCC---------CCcEEEEEeCCCCeeeEEEeCCCC
Q 013379 229 KKVCTYYKLD---------SIPVVLVVDPITGQKMRSWCGMVQ 262 (444)
Q Consensus 229 ~~~~~~y~~~---------~~P~l~ii~p~tg~~v~~~~G~~~ 262 (444)
..++..|++. .+|.++||++ .|.++....|..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~P~~~lId~-~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 95 GALAKALGVTIMEDPGNGFGIPTTFLIDK-DGKVVYRHVGPDP 136 (146)
T ss_dssp SHHHHHTTCEEECCTTTTSSSSEEEEEET-TSBEEEEEESSBT
T ss_pred HHHHHHhCCccccccccCCeecEEEEEEC-CCEEEEEEeCCCC
Confidence 3456678877 9999999996 7999988888654
No 147
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=93.38 E-value=0.44 Score=36.34 Aligned_cols=66 Identities=24% Similarity=0.304 Sum_probs=50.4
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCC-cCeEEEcCCCCCcccCCCCcCCChhhcCCCCceE
Q 013379 367 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEM-KPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMI 439 (444)
Q Consensus 367 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~-~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v 439 (444)
++|.++..+|+.+.-+-..+++++.|++...... +.+. ..+.|.-. ++. | +.+.|++++||....+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~-~i~~~~~~~l~fd--G~~--L--~~~~T~~~~~ied~d~ 67 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKK-GIPPEESIRLIFD--GKR--L--DPNDTPEDLGIEDGDT 67 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHH-TTTT-TTEEEEET--TEE--E---TTSCHHHHT-STTEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhh-CCCccceEEEEEC--CEE--c--CCCCCHHHCCCCCCCE
Confidence 4789999999999999999999999999876653 4455 67877764 432 4 6788999999995443
No 148
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=93.09 E-value=1.2 Score=39.24 Aligned_cols=23 Identities=9% Similarity=0.251 Sum_probs=17.9
Q ss_pred cEEEEEeCCCCeeeEEEeCCCChH
Q 013379 241 PVVLVVDPITGQKMRSWCGMVQPE 264 (444)
Q Consensus 241 P~l~ii~p~tg~~v~~~~G~~~~~ 264 (444)
|+.+||++ .|.++..+.|....+
T Consensus 121 ~~~~lid~-~G~i~~~~~g~~~~~ 143 (154)
T PRK09437 121 RISFLIDA-DGKIEHVFDKFKTSN 143 (154)
T ss_pred eEEEEECC-CCEEEEEEcCCCcch
Confidence 67889997 699999998865443
No 149
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=92.67 E-value=0.83 Score=41.99 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=54.9
Q ss_pred cCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhH-----------------------HHHHHH
Q 013379 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-----------------------KKVCTY 234 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg-----------------------~~~~~~ 234 (444)
.+||++||+. ..+|+.|..-...+ ++...+|-..++.+++++.++.+. ..+++.
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l--~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~ 107 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDL--ADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRN 107 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHH--HHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHH
Confidence 5788888888 77787776532221 112223333567777777665432 234566
Q ss_pred cCCC------CCcEEEEEeCCCCeeeEEEeCC----CChHHHHHHHH
Q 013379 235 YKLD------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLV 271 (444)
Q Consensus 235 y~~~------~~P~l~ii~p~tg~~v~~~~G~----~~~~~~l~~L~ 271 (444)
|++. ..|..+||++ +|.+...+.+. ...++++..|.
T Consensus 108 ~gv~~~~~g~~~p~tfiID~-~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 108 FGVLIEEAGLADRGTFVIDP-EGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred hCCcccCCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 7764 3599999997 68877766432 25667776663
No 150
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=92.59 E-value=0.43 Score=38.37 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=38.6
Q ss_pred eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCceEEE
Q 013379 378 RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISV 441 (444)
Q Consensus 378 r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v~v 441 (444)
.+++.|.++|||..|-..+...+ .. ...-+|-.-|=...+.+..+...|++||||..+.++|
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf-~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vl 76 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLF-NI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVL 76 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHC-T--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEE
T ss_pred HhHhhccccChHHHHHHHHHHHh-CC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEE
Confidence 58999999999999999988764 33 4455665533222233334678999999999766443
No 151
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=92.42 E-value=0.87 Score=40.18 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=19.1
Q ss_pred EEEEEeCCCCeeeEEEeCCCChHHHH
Q 013379 242 VVLVVDPITGQKMRSWCGMVQPESLL 267 (444)
Q Consensus 242 ~l~ii~p~tg~~v~~~~G~~~~~~~l 267 (444)
+.+|||+ .|+++.++.|.++++++.
T Consensus 125 ttflId~-~G~i~~~~~G~~~~~~l~ 149 (152)
T cd00340 125 TKFLVDR-DGEVVKRFAPTTDPEELE 149 (152)
T ss_pred EEEEECC-CCcEEEEECCCCCHHHHH
Confidence 5778885 688888888888776554
No 152
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=92.33 E-value=0.17 Score=52.97 Aligned_cols=82 Identities=16% Similarity=0.251 Sum_probs=66.9
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecC-ChhHHH-----HHHHcCCCCCc
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD-TSEGKK-----VCTYYKLDSIP 241 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~-s~eg~~-----~~~~y~~~~~P 241 (444)
.=++|.+.|+.++||+++-+--+.|.=|++|.+.-|.|++.-+++++|||-..+|-. .++--+ +...++-...|
T Consensus 100 wgqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWP 179 (786)
T KOG2244|consen 100 WGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWP 179 (786)
T ss_pred chHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCc
Confidence 347899999999999999998888999999999999999999999999999865542 233322 22345667899
Q ss_pred EEEEEeCC
Q 013379 242 VVLVVDPI 249 (444)
Q Consensus 242 ~l~ii~p~ 249 (444)
.-+++.|.
T Consensus 180 msV~LTPd 187 (786)
T KOG2244|consen 180 MSVFLTPD 187 (786)
T ss_pred eeEEeCCC
Confidence 99999885
No 153
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=92.26 E-value=0.29 Score=33.54 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=32.9
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (444)
++.|.+.+++--..+.+.-+..|+.++||+|.||+..++
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 346778888866779999999999999999999998875
No 154
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=92.21 E-value=0.56 Score=34.39 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=48.2
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCc
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANA 437 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~ 437 (444)
+|.||.++ +....++..++||..|..-|.... +.+.....|+.+ ++. + +.+.||.++|+.++
T Consensus 2 ~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~-~~~~~~~~L~~~--g~~--L--~d~~tL~~~~i~~~ 63 (64)
T smart00213 2 ELTVKTLD-GTITLEVKPSDTVSELKEKIAELT-GIPVEQQRLIYK--GKV--L--EDDRTLADYNIQDG 63 (64)
T ss_pred EEEEEECC-ceEEEEECCCCcHHHHHHHHHHHH-CCCHHHEEEEEC--CEE--C--CCCCCHHHcCCcCC
Confidence 68899999 578889999999999999998764 445556777754 443 4 33689999999864
No 155
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=91.95 E-value=1 Score=33.47 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=49.6
Q ss_pred EECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEEe
Q 013379 371 VRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVTW 443 (444)
Q Consensus 371 iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~~ 443 (444)
||..+|+.+...+..+.+|.+|...|.... +.+.....|..+ ++. + +.+.||.++|+.+ +.|.|.+
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~-~~~~~~~~l~~~--g~~--l--~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKE-GVPPEQQRLIYA--GKI--L--KDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHH-CcChHHEEEEEC--CcC--C--CCcCCHHHCCCCCCCEEEEEE
Confidence 567789999999999999999999998864 455556667443 443 4 4578999999985 5566654
No 156
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=91.93 E-value=0.67 Score=41.33 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=47.1
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcC---EEEEEeecCChhH-----------------------HHH
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDDTSEG-----------------------KKV 231 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~---fV~w~~~~~s~eg-----------------------~~~ 231 (444)
=++|.+.+|....+|.+|..| ++.=-.|-+-|.++ |-+.-++.+..+. .++
T Consensus 31 l~gKvV~lyFsA~wC~pCR~F---TP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l 107 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDF---TPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKL 107 (157)
T ss_pred hCCcEEEEEEEEEECCchhhC---CchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHH
Confidence 356888888888888888777 23333344444455 5444344444332 445
Q ss_pred HHHcCCCCCcEEEEEeCCCCeee
Q 013379 232 CTYYKLDSIPVVLVVDPITGQKM 254 (444)
Q Consensus 232 ~~~y~~~~~P~l~ii~p~tg~~v 254 (444)
+..|.+...|.+.+|.| +|..|
T Consensus 108 ~~ky~v~~iP~l~i~~~-dG~~v 129 (157)
T KOG2501|consen 108 SEKYEVKGIPALVILKP-DGTVV 129 (157)
T ss_pred HHhcccCcCceeEEecC-CCCEe
Confidence 67899999999999998 57543
No 157
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=91.60 E-value=0.5 Score=32.45 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=32.7
Q ss_pred HHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 12 ~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
+.|.+.+++=-..+....+..|+.++||+|.||+..++.
T Consensus 4 ~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 4 EALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 456666666567799999999999999999999998763
No 158
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.57 E-value=1.2 Score=42.74 Aligned_cols=90 Identities=13% Similarity=0.220 Sum_probs=71.5
Q ss_pred HHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCe
Q 013379 175 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 252 (444)
Q Consensus 175 ~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~ 252 (444)
.++.-.|.++|.+..+||-.|+.. .|-+.++-+. .+||..+|+ .+++..+..|+|...|+.++.- +|.
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~I------aP~Fs~lankYp~aVFlkVdV--d~c~~taa~~gV~amPTFiff~--ng~ 85 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRI------APIFSDLANKYPGAVFLKVDV--DECRGTAATNGVNAMPTFIFFR--NGV 85 (288)
T ss_pred hhccCceEEEEEEEecccchHHhh------hhHHHHhhhhCcccEEEEEeH--HHhhchhhhcCcccCceEEEEe--cCe
Confidence 345677999999999999999985 5777777774 599997666 5677889999999999988875 788
Q ss_pred eeEEEeCCCChHHHHHHHHhhhh
Q 013379 253 KMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 253 ~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
++.+++|. ++..|-+.+.+.++
T Consensus 86 kid~~qGA-d~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 86 KIDQIQGA-DASGLEEKVAKYAS 107 (288)
T ss_pred EeeeecCC-CHHHHHHHHHHHhc
Confidence 99999984 56666666666654
No 159
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=91.37 E-value=1.3 Score=36.95 Aligned_cols=70 Identities=13% Similarity=0.192 Sum_probs=46.6
Q ss_pred cCCeEEEEEeCC-CchhhHHHHhhccCChhHHHHH----hcCEEEEEeecCChhH-------------------HHHHHH
Q 013379 179 QDKWLLVNLQST-KEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSEG-------------------KKVCTY 234 (444)
Q Consensus 179 ~~K~LlVyl~~~-~~~~~~~f~rdv~~~~~V~~~l----~~~fV~w~~~~~s~eg-------------------~~~~~~ 234 (444)
.+||++|++... +|..|.... +.+.++. ..++-++++..++.+. ..++..
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l------~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 97 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAEL------PELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKA 97 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHH------HHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHH
T ss_pred CCCcEEEEEeCccCccccccch------hHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHH
Confidence 568899988887 888887653 2333333 2367777777777653 234556
Q ss_pred cCCC------CCcEEEEEeCCCCeeeE
Q 013379 235 YKLD------SIPVVLVVDPITGQKMR 255 (444)
Q Consensus 235 y~~~------~~P~l~ii~p~tg~~v~ 255 (444)
|++. .+|.++||++ .|.++.
T Consensus 98 ~~~~~~~~~~~~p~~~lid~-~g~I~~ 123 (124)
T PF00578_consen 98 FGIEDEKDTLALPAVFLIDP-DGKIRY 123 (124)
T ss_dssp TTCEETTTSEESEEEEEEET-TSBEEE
T ss_pred cCCccccCCceEeEEEEECC-CCEEEe
Confidence 6665 7899999997 566553
No 160
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=91.35 E-value=3 Score=36.69 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=27.7
Q ss_pred CCcE----EEEEeCCCCeeeEEEeCCCChHHHHHHHHhh
Q 013379 239 SIPV----VLVVDPITGQKMRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 239 ~~P~----l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~ 273 (444)
.+|. ..|||+ .|+++.++.|..+++++...|...
T Consensus 115 ~~p~~~~~tflID~-~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 115 KEPRWNFWKYLVNP-EGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCCCccEEEEEcC-CCcEEEEECCCCCHHHHHHHHHHh
Confidence 4776 889996 799999999999998887777653
No 161
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=91.19 E-value=0.071 Score=53.68 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=37.3
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (444)
.+.|++||.+ ||.++..|+.||+.++||++.|...++...
T Consensus 5 ~~~ls~f~~~-t~~se~~~~~~l~s~~~d~~~a~~~~~~~~ 44 (380)
T KOG2086|consen 5 LDSLSEFRAV-TGPSESRARFYLESIYWDREAAHRSELEAF 44 (380)
T ss_pred hhHHHHHhcc-CCCCccccccccccCCCchhhhhhhhcccc
Confidence 5689999999 999999999999999999999999998854
No 162
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=91.03 E-value=2.1 Score=40.14 Aligned_cols=83 Identities=11% Similarity=0.116 Sum_probs=56.9
Q ss_pred HHcCCeEEEE-EeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCee
Q 013379 177 SVQDKWLLVN-LQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 253 (444)
Q Consensus 177 ~~~~K~LlVy-l~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~ 253 (444)
+...+++.|. +.+++|..|..+. +.+.++... +..+..++. .+...++..|++.++|++.|.. .|..
T Consensus 129 ~~~~~pv~I~~F~a~~C~~C~~~~------~~l~~l~~~~~~i~~~~vD~--~~~~~~~~~~~V~~vPtl~i~~--~~~~ 198 (215)
T TIGR02187 129 QSLDEPVRIEVFVTPTCPYCPYAV------LMAHKFALANDKILGEMIEA--NENPDLAEKYGVMSVPKIVINK--GVEE 198 (215)
T ss_pred HhcCCCcEEEEEECCCCCCcHHHH------HHHHHHHHhcCceEEEEEeC--CCCHHHHHHhCCccCCEEEEec--CCEE
Confidence 3456776665 6889999999774 333434332 455554444 4456788899999999999864 3542
Q ss_pred eEEEeCCCChHHHHHHHHh
Q 013379 254 MRSWCGMVQPESLLEDLVP 272 (444)
Q Consensus 254 v~~~~G~~~~~~~l~~L~~ 272 (444)
+.|..+.++|...|..
T Consensus 199 ---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 199 ---FVGAYPEEQFLEYILS 214 (215)
T ss_pred ---EECCCCHHHHHHHHHh
Confidence 7798888888887754
No 163
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=90.95 E-value=1.5 Score=34.43 Aligned_cols=68 Identities=21% Similarity=0.195 Sum_probs=51.1
Q ss_pred EEEEECCCCce-EEE-EeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 368 RVGVRLPDGRR-MQR-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 368 ~i~iRlP~G~r-~~r-rF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
+|-||..+|+. ..- -...++||..|..-|... .+.+....+|+.. ++. | +.+.||.+.|+. +++|.+.
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~-~gi~~~~QrLi~~--Gk~--L--~D~~tL~~y~i~~~~~i~l~ 72 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQEL-FNVEPECQRLFYR--GKQ--M--EDGHTLFDYNVGLNDIIQLL 72 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHH-hCCCHHHeEEEeC--CEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 58899999986 344 356789999999999775 4667778888864 553 4 557899999999 4666544
No 164
>KOG4351 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.90 E-value=0.036 Score=51.76 Aligned_cols=49 Identities=16% Similarity=0.389 Sum_probs=41.4
Q ss_pred cCCcchHHHHHHhhcccccCC-CH-HHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013379 4 VLSANDKQSMVSSFLEIAVGQ-TA-ETAVQFLQATSWKLDEAIQLFYVGNE 52 (444)
Q Consensus 4 ~l~~~~~~~~i~~F~~itt~~-~~-~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (444)
-+++.+++++|.+|..++..+ .+ .-|+.||++.||+|..|+..||....
T Consensus 17 ~~tt~dr~~Li~qf~~lm~~qm~P~~~aaF~Ld~knW~lqna~sv~~d~~t 67 (244)
T KOG4351|consen 17 PMTTTDRPELIHQFQRLMNTQMNPMLSAAFVLDMKNWNLQNAGSVYWDQDT 67 (244)
T ss_pred CCCCCCcHHHHHHHHHHhhhccCcccccceeeeccceeccccccEEEcCCC
Confidence 456777888999999994333 45 89999999999999999999999755
No 165
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=90.78 E-value=1.4 Score=39.73 Aligned_cols=92 Identities=15% Similarity=0.139 Sum_probs=53.8
Q ss_pred HcCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhH--------------------------HH
Q 013379 178 VQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KK 230 (444)
Q Consensus 178 ~~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg--------------------------~~ 230 (444)
-.+|+++|++. ..+|..|..-...+ +....+|-+.++.++.++.+..+. ..
T Consensus 27 ~~Gk~vvl~F~~~~~c~~C~~~l~~l--~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 104 (173)
T cd03015 27 YKGKWVVLFFYPLDFTFVCPTEIIAF--SDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKK 104 (173)
T ss_pred hCCCEEEEEEECCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchh
Confidence 35789999998 56677776543221 111222223456666666655421 12
Q ss_pred HHHHcCCC------CCcEEEEEeCCCCeeeEEEeCCC----ChHHHHHHHHh
Q 013379 231 VCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVP 272 (444)
Q Consensus 231 ~~~~y~~~------~~P~l~ii~p~tg~~v~~~~G~~----~~~~~l~~L~~ 272 (444)
+++.|++. ..|+.+|||+ .|.++..+.+.. +.++++..|..
T Consensus 105 ~~~~~gv~~~~~~~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~~il~~l~~ 155 (173)
T cd03015 105 ISRDYGVLDEEEGVALRGTFIIDP-EGIIRHITVNDLPVGRSVDETLRVLDA 155 (173)
T ss_pred HHHHhCCccccCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 34456653 4689999997 688877775532 44556666543
No 166
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.66 E-value=0.89 Score=46.63 Aligned_cols=66 Identities=9% Similarity=0.125 Sum_probs=52.9
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCC---CCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCceEE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEG---SEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMIS 440 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~---~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v~ 440 (444)
+|-||..+|+.+.-.+..++||.+|...|.... + +.....+|+.. +|. | +.++||+++|+....++
T Consensus 2 kItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~-g~~~ip~~~QkLIy~--Gki--L--~Dd~tL~dy~I~e~~~I 70 (378)
T TIGR00601 2 TLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQ-GKDAYPVAQQKLIYS--GKI--L--SDDKTVREYKIKEKDFV 70 (378)
T ss_pred EEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhh-CCCCCChhHeEEEEC--CEE--C--CCCCcHHHcCCCCCCEE
Confidence 689999999999999999999999999998763 4 56677888754 654 5 45679999999854433
No 167
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=90.54 E-value=2.8 Score=38.60 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=30.0
Q ss_pred HHHHcCCCCCcEE-EEEeCCCCeeeEEEeCCCChHHHHH
Q 013379 231 VCTYYKLDSIPVV-LVVDPITGQKMRSWCGMVQPESLLE 268 (444)
Q Consensus 231 ~~~~y~~~~~P~l-~ii~p~tg~~v~~~~G~~~~~~~l~ 268 (444)
++..|++..+|.- +|||+ .|.++.+..|.++.+++-.
T Consensus 137 v~~~~gv~~~P~T~fVIDk-~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 137 VKNAWQLNSEDSAIIVLDK-TGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred HHHhcCCCCCCceEEEECC-CCcEEEEEeCCCCHHHHHH
Confidence 4567888999877 89996 7999999999988776644
No 168
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=90.08 E-value=3.3 Score=37.26 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=23.7
Q ss_pred HHHHHcCCCCCc---------EEEEEeCCCCeeeEEEeCC-----CChHHHHHHH
Q 013379 230 KVCTYYKLDSIP---------VVLVVDPITGQKMRSWCGM-----VQPESLLEDL 270 (444)
Q Consensus 230 ~~~~~y~~~~~P---------~l~ii~p~tg~~v~~~~G~-----~~~~~~l~~L 270 (444)
.++..|++...| ..+||++ +|.++..+.+. ...++++..|
T Consensus 112 ~~~~~~gv~~~~~~~~g~~~r~tfvId~-~G~I~~~~~~~~~~~~~~~~~~l~~l 165 (167)
T PRK00522 112 SFGKAYGVAIAEGPLKGLLARAVFVLDE-NNKVVYSELVPEITNEPDYDAALAAL 165 (167)
T ss_pred HHHHHhCCeecccccCCceeeEEEEECC-CCeEEEEEECCCcCCCCCHHHHHHHh
Confidence 455666665555 7788885 67777666432 2345555544
No 169
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=90.05 E-value=2.8 Score=37.59 Aligned_cols=90 Identities=18% Similarity=0.292 Sum_probs=52.5
Q ss_pred HHcCCe-EEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCC--CCcEEEEEeCCCCee
Q 013379 177 SVQDKW-LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLD--SIPVVLVVDPITGQK 253 (444)
Q Consensus 177 ~~~~K~-LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~--~~P~l~ii~p~tg~~ 253 (444)
...+++ +++.+...+......+...+ ..+..-.+.+++|.-++.+ ...+++..|++. .+|.++|+++.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~a~~~~~~~~f~~~d~~--~~~~~~~~~~i~~~~~P~~vi~~~~~~~~ 165 (184)
T PF13848_consen 91 FSSPKPPVLILFDNKDNESTEAFKKEL---QDIAKKFKGKINFVYVDAD--DFPRLLKYFGIDEDDLPALVIFDSNKGKY 165 (184)
T ss_dssp HSTSSEEEEEEEETTTHHHHHHHHHHH---HHHHHCTTTTSEEEEEETT--TTHHHHHHTTTTTSSSSEEEEEETTTSEE
T ss_pred hcCCCceEEEEEEcCCchhHHHHHHHH---HHHHHhcCCeEEEEEeehH--HhHHHHHHcCCCCccCCEEEEEECCCCcE
Confidence 344555 55555444444444442211 2333333455666645555 445588899987 899999999888764
Q ss_pred eEEEeCCCChHHHHHHHH
Q 013379 254 MRSWCGMVQPESLLEDLV 271 (444)
Q Consensus 254 v~~~~G~~~~~~~l~~L~ 271 (444)
-..-.|.++++.+...|.
T Consensus 166 ~~~~~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 166 YYLPEGEITPESIEKFLN 183 (184)
T ss_dssp EE--SSCGCHHHHHHHHH
T ss_pred EcCCCCCCCHHHHHHHhc
Confidence 332377788877666553
No 170
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=90.04 E-value=2.6 Score=32.62 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=46.4
Q ss_pred EEEeCCCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCC-
Q 013379 185 VNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM- 260 (444)
Q Consensus 185 Vyl~~~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~- 260 (444)
|.+++++|..|+.+- +.+.+++.+ .+.+. .++..+ .+..|++.+.|+++| +|+++ +.|.
T Consensus 3 i~~~a~~C~~C~~~~------~~~~~~~~e~~~~~~~~--~v~~~~---~a~~~~v~~vPti~i----~G~~~--~~G~~ 65 (76)
T TIGR00412 3 IQIYGTGCANCQMTE------KNVKKAVEELGIDAEFE--KVTDMN---EILEAGVTATPGVAV----DGELV--IMGKI 65 (76)
T ss_pred EEEECCCCcCHHHHH------HHHHHHHHHcCCCeEEE--EeCCHH---HHHHcCCCcCCEEEE----CCEEE--EEecc
Confidence 677889999999873 455666654 35555 343332 266799999999998 57766 7785
Q ss_pred CChHHHHHHH
Q 013379 261 VQPESLLEDL 270 (444)
Q Consensus 261 ~~~~~~l~~L 270 (444)
.+.+++.+.|
T Consensus 66 ~~~~~l~~~l 75 (76)
T TIGR00412 66 PSKEEIKEIL 75 (76)
T ss_pred CCHHHHHHHh
Confidence 3445555443
No 171
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=89.71 E-value=0.44 Score=40.18 Aligned_cols=32 Identities=22% Similarity=0.193 Sum_probs=27.6
Q ss_pred HHHhhcccccCCCHHHHHHHHHHcCCCHHHHHH
Q 013379 13 MVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQ 45 (444)
Q Consensus 13 ~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~ 45 (444)
.|.-.++= ||++.+.|+..|+.|||||-.||-
T Consensus 81 DI~lV~eq-~gvs~e~A~~AL~~~~gDl~~AI~ 112 (116)
T TIGR00264 81 DIELVMKQ-CNVSKEEARRALEECGGDLAEAIM 112 (116)
T ss_pred HHHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHH
Confidence 45455666 899999999999999999999985
No 172
>PRK13190 putative peroxiredoxin; Provisional
Probab=88.82 E-value=3.9 Score=38.10 Aligned_cols=92 Identities=11% Similarity=0.056 Sum_probs=52.4
Q ss_pred cCCeEEEE-EeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhH-------------------------HHHH
Q 013379 179 QDKWLLVN-LQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KKVC 232 (444)
Q Consensus 179 ~~K~LlVy-l~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg-------------------------~~~~ 232 (444)
.+||++|+ .-.++|+.|..=...+ .....+|-+.++.+++++.++.+. ..++
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l--~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia 103 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAF--SRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELA 103 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHH
Confidence 57887764 4566677765421110 111112223466666666665322 2345
Q ss_pred HHcCCC------CCcEEEEEeCCCCeeeEEEe----CCCChHHHHHHHHhh
Q 013379 233 TYYKLD------SIPVVLVVDPITGQKMRSWC----GMVQPESLLEDLVPF 273 (444)
Q Consensus 233 ~~y~~~------~~P~l~ii~p~tg~~v~~~~----G~~~~~~~l~~L~~~ 273 (444)
..|++. .+|.++||+| .|.+..... +..+.++++..|...
T Consensus 104 ~~ygv~~~~~g~~~p~~fiId~-~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 104 REYNLIDENSGATVRGVFIIDP-NQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred HHcCCccccCCcEEeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 667763 4899999998 577655542 224778887777654
No 173
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=88.72 E-value=0.56 Score=39.62 Aligned_cols=34 Identities=26% Similarity=0.221 Sum_probs=29.2
Q ss_pred HHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHH
Q 013379 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQL 46 (444)
Q Consensus 12 ~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~ 46 (444)
+.|.-.|+= ||++.+.|+..|+.|||||-.||-.
T Consensus 78 edI~lv~~q-~gvs~~~A~~AL~~~~gDl~~AI~~ 111 (115)
T PRK06369 78 EDIELVAEQ-TGVSEEEARKALEEANGDLAEAILK 111 (115)
T ss_pred HHHHHHHHH-HCcCHHHHHHHHHHcCCcHHHHHHH
Confidence 346566777 9999999999999999999999864
No 174
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=88.67 E-value=3.8 Score=37.99 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=50.7
Q ss_pred cCCeEEEEEeC-CCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhH--------------------------HHH
Q 013379 179 QDKWLLVNLQS-TKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KKV 231 (444)
Q Consensus 179 ~~K~LlVyl~~-~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg--------------------------~~~ 231 (444)
.+||++|+++. ..|+-|..-... -+....+|-..++-+++++.++.+. ..+
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~--l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~i 112 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQ--FSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSI 112 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHH--HHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHH
Confidence 46788887774 335555432111 1122233333466666666665432 245
Q ss_pred HHHcCCC------CCcEEEEEeCCCCeeeEEEeCCC----ChHHHHHHHH
Q 013379 232 CTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLV 271 (444)
Q Consensus 232 ~~~y~~~------~~P~l~ii~p~tg~~v~~~~G~~----~~~~~l~~L~ 271 (444)
++.|++- .+|..+|||| .|.+...+.+.. +.++++..|.
T Consensus 113 a~~ygv~~~~~g~~~r~~fiID~-~G~i~~~~~~~~~~~r~~~e~l~~l~ 161 (199)
T PTZ00253 113 ARSYGVLEEEQGVAYRGLFIIDP-KGMLRQITVNDMPVGRNVEEVLRLLE 161 (199)
T ss_pred HHHcCCcccCCCceEEEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 6677763 4799999998 588776665533 3455555444
No 175
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=87.54 E-value=4 Score=31.34 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=49.4
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
+|-||. ++..+-....++||.+|-.-|... .+.+.....|+.+ .+. | +.+.||+++|+. .++|-+.
T Consensus 2 qi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~-~gip~~~q~Li~~--Gk~--L--~D~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01793 2 QLFVRA--QNTHTLEVTGQETVSDIKAHVAGL-EGIDVEDQVLLLA--GVP--L--EDDATLGQCGVEELCTLEVA 68 (74)
T ss_pred EEEEEC--CCEEEEEECCcCcHHHHHHHHHhh-hCCCHHHEEEEEC--CeE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 466776 466788899999999999999875 4666677788764 553 4 456999999998 4666543
No 176
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=87.38 E-value=5.4 Score=33.96 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=19.8
Q ss_pred HHHHHcCCCCCc---------EEEEEeCCCCeeeEEEeCCC
Q 013379 230 KVCTYYKLDSIP---------VVLVVDPITGQKMRSWCGMV 261 (444)
Q Consensus 230 ~~~~~y~~~~~P---------~l~ii~p~tg~~v~~~~G~~ 261 (444)
.++..|++...| +++||++ +|+++.++.|..
T Consensus 91 ~~~~~~g~~~~~~~~~~~~~p~~~lid~-~g~i~~~~~~~~ 130 (140)
T cd02971 91 EFAKAYGVLIEKSAGGGLAARATFIIDP-DGKIRYVEVEPL 130 (140)
T ss_pred HHHHHcCCccccccccCceeEEEEEECC-CCcEEEEEecCC
Confidence 344555554443 7788886 688887777643
No 177
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=87.14 E-value=8.3 Score=37.57 Aligned_cols=90 Identities=14% Similarity=0.026 Sum_probs=55.6
Q ss_pred cCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhH--------------------------HHH
Q 013379 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KKV 231 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg--------------------------~~~ 231 (444)
.+||++++++ ..+|+.|..=...+ ++...+|-+.++.+++++.++.+. ..+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l--~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~i 174 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGF--SERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREV 174 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHH
Confidence 5688888888 57777776522111 122233333566777777666421 345
Q ss_pred HHHcCCC-----CCcEEEEEeCCCCeeeEEEeC----CCChHHHHHHHH
Q 013379 232 CTYYKLD-----SIPVVLVVDPITGQKMRSWCG----MVQPESLLEDLV 271 (444)
Q Consensus 232 ~~~y~~~-----~~P~l~ii~p~tg~~v~~~~G----~~~~~~~l~~L~ 271 (444)
++.|++. ..|..+|||+ .|.+...+.. .-+.++++..|.
T Consensus 175 akayGv~~~~g~a~R~tFIID~-dG~I~~~~~~~~~~gr~v~eiLr~l~ 222 (261)
T PTZ00137 175 SKSFGLLRDEGFSHRASVLVDK-AGVVKHVAVYDLGLGRSVDETLRLFD 222 (261)
T ss_pred HHHcCCCCcCCceecEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 6677773 4899999997 6887766532 136777776665
No 178
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=86.94 E-value=3.1 Score=28.93 Aligned_cols=64 Identities=23% Similarity=0.206 Sum_probs=46.9
Q ss_pred EECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEE
Q 013379 371 VRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 441 (444)
Q Consensus 371 iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v 441 (444)
+++++|+....++..+.++.+|...+.... +.....|.|..+.+... ...++.+.++. +..|.+
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~-~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~i~~ 66 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKL-GLPPEQQRLLVNGKILP------DSLTLEDYGLQDGDELVL 66 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHH-CcChHHeEEEECCeECC------CCCcHHHcCCCCCCEEEE
Confidence 677899999999999999999999998865 35667899988765532 23344566666 344443
No 179
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=85.64 E-value=5.3 Score=30.87 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=50.7
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
+|.|++ +|+...-.+..++||.+|-+-+... .+.+...-+|+..-.+.. .+ ..+.||.++|+.+ +.|++
T Consensus 2 ~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~-tgvp~~~QKLi~~~~~Gk-~l--~D~~~L~~~~i~~g~~i~l 71 (74)
T cd01813 2 PVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTL-TGVLPERQKLLGLKVKGK-PA--EDDVKISALKLKPNTKIMM 71 (74)
T ss_pred EEEEEE-CCEEEEEEECCCCCHHHHHHHHHHH-HCCCHHHEEEEeecccCC-cC--CCCcCHHHcCCCCCCEEEE
Confidence 577777 6778888999999999999999885 466777788886201221 23 4479999999985 44544
No 180
>PRK13191 putative peroxiredoxin; Provisional
Probab=85.44 E-value=11 Score=35.57 Aligned_cols=91 Identities=10% Similarity=0.071 Sum_probs=50.1
Q ss_pred cCCeEEE-EEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhH-------------------------HHHH
Q 013379 179 QDKWLLV-NLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KKVC 232 (444)
Q Consensus 179 ~~K~LlV-yl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg-------------------------~~~~ 232 (444)
.+||++| +.-.+.|+.|..=... -++...+|-+.++.+++++.++... ..++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~--l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia 109 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYS--FAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA 109 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHH--HHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH
Confidence 4566665 3334556655542211 1122223333456666666665443 2455
Q ss_pred HHcCCC-------CCcEEEEEeCCCCeeeEEEeCC----CChHHHHHHHHh
Q 013379 233 TYYKLD-------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVP 272 (444)
Q Consensus 233 ~~y~~~-------~~P~l~ii~p~tg~~v~~~~G~----~~~~~~l~~L~~ 272 (444)
+.|++- ..|.++|||| .|.+.....+. -+.++++..|..
T Consensus 110 ~~ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~a 159 (215)
T PRK13191 110 KRLGMIHAESSTATVRAVFIVDD-KGTVRLILYYPMEIGRNIDEILRAIRA 159 (215)
T ss_pred HHcCCcccccCCceeEEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 667752 3789999998 68766655443 267777776654
No 181
>PRK13189 peroxiredoxin; Provisional
Probab=84.79 E-value=7.6 Score=36.78 Aligned_cols=42 Identities=12% Similarity=0.178 Sum_probs=26.6
Q ss_pred HHHHHcCCC-------CCcEEEEEeCCCCeeeEEEeCC----CChHHHHHHHHh
Q 013379 230 KVCTYYKLD-------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVP 272 (444)
Q Consensus 230 ~~~~~y~~~-------~~P~l~ii~p~tg~~v~~~~G~----~~~~~~l~~L~~ 272 (444)
.+++.|++. ..|.++|||| .|.+...+-+. -+.++++..|..
T Consensus 109 ~ia~~ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~a 161 (222)
T PRK13189 109 EIAKKLGMISPGKGTNTVRAVFIIDP-KGIIRAILYYPQEVGRNMDEILRLVKA 161 (222)
T ss_pred HHHHHhCCCccccCCCceeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 456667753 4689999998 57765554432 245666666653
No 182
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=84.00 E-value=2.7 Score=32.85 Aligned_cols=71 Identities=25% Similarity=0.353 Sum_probs=45.9
Q ss_pred ceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCC--CCC---cCeEEEcCCCCCcccCCCCcCCChhhcCCCCceEE
Q 013379 366 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEG--SEM---KPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMIS 440 (444)
Q Consensus 366 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~--~~~---~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v~ 440 (444)
.|+|-|..++|+++.-..+.+-++..|..-+-..+.. ... ..|.|.+. +.+ ..+.+.||.++|+.++.++
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~-~g~----~L~~~~tL~~~gV~dGd~L 76 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARA-GGR----PLDPDQTLADAGVRDGDVL 76 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-G-GTE----EEETTSBCGGGT--TT-EE
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEec-CCc----ccCCcCcHhHcCCCCCCEE
Confidence 5899999999899999999999999999987765422 111 25777742 222 2477999999999977665
Q ss_pred E
Q 013379 441 V 441 (444)
Q Consensus 441 v 441 (444)
+
T Consensus 77 ~ 77 (79)
T PF08817_consen 77 V 77 (79)
T ss_dssp E
T ss_pred E
Confidence 4
No 183
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=83.68 E-value=6.8 Score=40.19 Aligned_cols=94 Identities=20% Similarity=0.174 Sum_probs=70.2
Q ss_pred HHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeee
Q 013379 175 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 254 (444)
Q Consensus 175 ~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v 254 (444)
.....++..+|.+..++|..|+.+-.... .+...++. ++..+.++-.+-..+++.|++..||++.+..+- ...
T Consensus 42 ~~~~~~~~~~v~fyapwc~~c~~l~~~~~---~~~~~l~~--~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~--~~~ 114 (383)
T KOG0191|consen 42 FLLKDDSPWLVEFYAPWCGHCKKLAPTYK---KLAKALKG--KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG--KKP 114 (383)
T ss_pred HhhccCCceEEEEECCCCcchhhhchHHH---HHHHHhcC--ceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC--Cce
Confidence 35567788899999999999999854333 55566666 555568888888999999999999999999873 333
Q ss_pred EEEeCCCChHHHHHHHHhhhh
Q 013379 255 RSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 255 ~~~~G~~~~~~~l~~L~~~l~ 275 (444)
....|..+.+.+...+...++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~ 135 (383)
T KOG0191|consen 115 IDYSGPRNAESLAEFLIKELE 135 (383)
T ss_pred eeccCcccHHHHHHHHHHhhc
Confidence 345566677777766665554
No 184
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=83.28 E-value=7.6 Score=30.60 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=49.9
Q ss_pred eEEEEECCCCce--EEEEeCCCCchHHHHHHHHhhcCC-CCCcCeEEEcCCCCCcccCCCCcCCChhhcC--CC-CceEE
Q 013379 367 CRVGVRLPDGRR--MQRNFLRTDPIQLLWSYCYSQLEG-SEMKPFRLTHAIPGATKSLDYDSKLTFEDSG--LA-NAMIS 440 (444)
Q Consensus 367 ~~i~iRlP~G~r--~~rrF~~~~~l~~l~~fv~~~~~~-~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~g--L~-~~~v~ 440 (444)
++|.||.|+|++ +.-.+..++||.+|-+-|....+. .+...-+|+.. +|. | +.+.||++.+ +. .-+|-
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~--GKi--L--kD~~tL~~~~~~~~~~~tiH 75 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYS--GKL--L--PDHLKLRDVLRKQDEYHMVH 75 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEc--Cee--c--cchhhHHHHhhcccCCceEE
Confidence 579999999998 555558999999999999876532 23456677764 554 5 4568999996 55 34454
Q ss_pred EE
Q 013379 441 VT 442 (444)
Q Consensus 441 v~ 442 (444)
++
T Consensus 76 LV 77 (79)
T cd01790 76 LV 77 (79)
T ss_pred EE
Confidence 43
No 185
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=83.13 E-value=1.5 Score=46.44 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=38.4
Q ss_pred HHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013379 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (444)
Q Consensus 10 ~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (444)
.+++|.-|++. ||...+=+..+|+.+|||.|.|+++|-+...+
T Consensus 535 ~~e~l~~~~~~-tGln~~~s~~c~e~~nWdy~~A~k~F~~~ks~ 577 (585)
T KOG3763|consen 535 TDEKLLKFQEE-TGLNSEWSTMCLEQNNWDYERALKLFIELKSD 577 (585)
T ss_pred HHHHHHHHHHH-hcCChHHHHHHHHHccCCHHHHHHHHHHhhcC
Confidence 46688899999 99999999999999999999999999886543
No 186
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=82.52 E-value=19 Score=32.31 Aligned_cols=96 Identities=11% Similarity=0.146 Sum_probs=58.7
Q ss_pred HHHHHHcCCeEEEEEeCC-Cch-hhHHHHhhccCChhHHHHHhcCEEEEEeecCChhH-------------------HHH
Q 013379 173 KDAASVQDKWLLVNLQST-KEF-SSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------KKV 231 (444)
Q Consensus 173 ~~~A~~~~K~LlVyl~~~-~~~-~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg-------------------~~~ 231 (444)
+..+.-.+||+++|++-- ... ++...|. -++...+|=+-+.++++++.++++. ..+
T Consensus 23 v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~---Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v 99 (157)
T COG1225 23 VSLSDLRGKPVVLYFYPKDFTPGCTTEACD---FRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEV 99 (157)
T ss_pred EehHHhcCCcEEEEECCCCCCCcchHHHHH---HHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHH
Confidence 444555678999999852 122 2222321 1233334444589999999998876 335
Q ss_pred HHHcCCC------------CCcEEEEEeCCCCeeeEEEeCC---CChHHHHHHHHh
Q 013379 232 CTYYKLD------------SIPVVLVVDPITGQKMRSWCGM---VQPESLLEDLVP 272 (444)
Q Consensus 232 ~~~y~~~------------~~P~l~ii~p~tg~~v~~~~G~---~~~~~~l~~L~~ 272 (444)
+..|++- .-+...||++ .|.+...|... -.+++.++.|..
T Consensus 100 ~~~ygv~~~k~~~gk~~~~~~R~TfvId~-dG~I~~~~~~v~~~~h~~~vl~~l~~ 154 (157)
T COG1225 100 AEAYGVWGEKKMYGKEYMGIERSTFVIDP-DGKIRYVWRKVKVKGHADEVLAALKK 154 (157)
T ss_pred HHHhCcccccccCccccccccceEEEECC-CCeEEEEecCCCCcccHHHHHHHHHH
Confidence 6667661 3467888996 68888888542 235566666654
No 187
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=82.41 E-value=7 Score=33.65 Aligned_cols=74 Identities=11% Similarity=0.074 Sum_probs=41.4
Q ss_pred cCCeEEEEEeCCC-chhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhH---------------------HHHHHH
Q 013379 179 QDKWLLVNLQSTK-EFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEG---------------------KKVCTY 234 (444)
Q Consensus 179 ~~K~LlVyl~~~~-~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg---------------------~~~~~~ 234 (444)
.+|+++|++...+ |..|..- .+.+.++.. .++.+++++.++.+. ..++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e------~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 98 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQ------TKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKA 98 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHH------HHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHH
Confidence 4688888888766 4656543 223333332 267777777765431 233444
Q ss_pred cCCCC------CcEEEEEeCCCCeeeEEEeC
Q 013379 235 YKLDS------IPVVLVVDPITGQKMRSWCG 259 (444)
Q Consensus 235 y~~~~------~P~l~ii~p~tg~~v~~~~G 259 (444)
|++.. .|..+||++ .|.++..+-|
T Consensus 99 ~gv~~~~~~~~~~~~~iid~-~G~I~~~~~~ 128 (143)
T cd03014 99 YGVLIKDLGLLARAVFVIDE-NGKVIYVELV 128 (143)
T ss_pred hCCeeccCCccceEEEEEcC-CCeEEEEEEC
Confidence 54421 467777775 5666666554
No 188
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=82.40 E-value=4.3 Score=40.08 Aligned_cols=93 Identities=18% Similarity=0.276 Sum_probs=64.8
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccC-ChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeE-E
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWA-NEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR-S 256 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~-~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~-~ 256 (444)
.+..++|++..+||.=|++|-.-.-. ...+++-.-++=|+|+ .++..--..+++.|.+..||++=|+- +|++++ .
T Consensus 12 s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg-~VDcd~e~~ia~ky~I~KyPTlKvfr--nG~~~~rE 88 (375)
T KOG0912|consen 12 SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWG-KVDCDKEDDIADKYHINKYPTLKVFR--NGEMMKRE 88 (375)
T ss_pred cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEE-EcccchhhHHhhhhccccCceeeeee--ccchhhhh
Confidence 36789999999999888887321111 1123332234678997 55555556789999999999999885 798876 4
Q ss_pred EeCCCChHHHHHHHHhhh
Q 013379 257 WCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 257 ~~G~~~~~~~l~~L~~~l 274 (444)
..|.-+.+.|++.+.+-+
T Consensus 89 YRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 89 YRGQRSVEALIEFIEKQL 106 (375)
T ss_pred hccchhHHHHHHHHHHHh
Confidence 568777777777665443
No 189
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=82.17 E-value=19 Score=28.75 Aligned_cols=81 Identities=10% Similarity=0.048 Sum_probs=48.6
Q ss_pred HHHcCCeEEE-EEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeee
Q 013379 176 ASVQDKWLLV-NLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 254 (444)
Q Consensus 176 A~~~~K~LlV-yl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v 254 (444)
+++=++++=| -+++++|..|....+ ++ +.+... ..++-+..++.+ +...++..|++.+.|++++ +|+++
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~-~~--~~l~~~-~~~i~~~~vd~~--~~~e~a~~~~V~~vPt~vi----dG~~~ 76 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQ-AL--NLMAVL-NPNIEHEMIDGA--LFQDEVEERGIMSVPAIFL----NGELF 76 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHH-HH--HHHHHH-CCCceEEEEEhH--hCHHHHHHcCCccCCEEEE----CCEEE
Confidence 3344555433 445577888887532 22 222221 234555544543 4456888999999999964 47765
Q ss_pred EEEeCCCChHHHHH
Q 013379 255 RSWCGMVQPESLLE 268 (444)
Q Consensus 255 ~~~~G~~~~~~~l~ 268 (444)
. .|..+.++++.
T Consensus 77 ~--~G~~~~~e~~~ 88 (89)
T cd03026 77 G--FGRMTLEEILA 88 (89)
T ss_pred E--eCCCCHHHHhh
Confidence 4 48777777654
No 190
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=82.11 E-value=7.5 Score=33.20 Aligned_cols=20 Identities=20% Similarity=0.012 Sum_probs=14.2
Q ss_pred cCCeEEEEEeCCCchh-hHHH
Q 013379 179 QDKWLLVNLQSTKEFS-SHML 198 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~-~~~f 198 (444)
.+||++|++...+|.. |...
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~ 41 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTT 41 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHH
Confidence 5678888888777765 7543
No 191
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=81.35 E-value=18 Score=30.92 Aligned_cols=64 Identities=11% Similarity=-0.001 Sum_probs=33.5
Q ss_pred CCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHH-HHHHcCCCCCcEEEEEeC
Q 013379 180 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKK-VCTYYKLDSIPVVLVVDP 248 (444)
Q Consensus 180 ~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~-~~~~y~~~~~P~l~ii~p 248 (444)
++.+|+++-..+|..|..--..+ +....++-..++.++++..++.+... +++.++ +|+-++.|+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l--~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~---~~~p~~~D~ 88 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRAL--SKLLPELDALGVELVAVGPESPEKLEAFDKGKF---LPFPVYADP 88 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHH--HHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC---CCCeEEECC
Confidence 34455555578888887653322 11122222356888888877765433 333332 334445554
No 192
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=81.11 E-value=6.1 Score=30.54 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=46.3
Q ss_pred CCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 375 DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 375 ~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
+|+.+.-.+..++||.+|-+-|... .+.+.....|+.. .+. + +.+.||.++|+.+ ++|.|.
T Consensus 6 ~g~~~~l~v~~~~TV~~lK~~i~~~-~gip~~~q~L~~~--G~~--L--~d~~tL~~~~i~~g~~l~v~ 67 (76)
T cd01800 6 NGQMLNFTLQLSDPVSVLKVKIHEE-TGMPAGKQKLQYE--GIF--I--KDSNSLAYYNLANGTIIHLQ 67 (76)
T ss_pred CCeEEEEEECCCCcHHHHHHHHHHH-HCCCHHHEEEEEC--CEE--c--CCCCcHHHcCCCCCCEEEEE
Confidence 5778888999999999999999875 4666777888754 432 4 4468999999984 556554
No 193
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=80.99 E-value=17 Score=33.33 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=44.0
Q ss_pred HHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh----cCEEEEEeecC--------C-hhHHHHHH-HcCCCCC
Q 013379 175 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDD--------T-SEGKKVCT-YYKLDSI 240 (444)
Q Consensus 175 ~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~----~~fV~w~~~~~--------s-~eg~~~~~-~y~~~~~ 240 (444)
.+.=.+|++||+...++|..|..+ +.+.++.+ ..|.+++++.+ + .+...++. .|++ .|
T Consensus 20 Ls~~~GKvvLVvf~AS~C~~~~q~-------~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~-~F 91 (183)
T PRK10606 20 LEKYAGNVLLIVNVASKCGLTPQY-------EQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV-TF 91 (183)
T ss_pred HHHhCCCEEEEEEEeCCCCCcHHH-------HHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCC-Cc
Confidence 344457999998888888877655 34444443 46888888653 2 34456665 5665 57
Q ss_pred cEEEEEeCCCC
Q 013379 241 PVVLVVDPITG 251 (444)
Q Consensus 241 P~l~ii~p~tg 251 (444)
|.+.=++. +|
T Consensus 92 pv~~k~dv-nG 101 (183)
T PRK10606 92 PMFSKIEV-NG 101 (183)
T ss_pred eeEEEEcc-CC
Confidence 87766763 45
No 194
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=80.97 E-value=6.9 Score=30.37 Aligned_cols=62 Identities=13% Similarity=0.034 Sum_probs=46.3
Q ss_pred ECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-C-ceEE
Q 013379 372 RLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-N-AMIS 440 (444)
Q Consensus 372 RlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~-~~v~ 440 (444)
+...|+.++-.+..++||..|-..|... .+.+....+| |-.+. + .+.+.||.++|+. + .+|.
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~-~gip~~~QrL---~~G~~--L-~dD~~tL~~ygi~~~g~~~~ 71 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLD-YGFPPAVQRW---VIGQR--L-ARDQETLYSHGIRTNGDSAF 71 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHH-HCcCHHHEEE---EcCCe--e-CCCcCCHHHcCCCCCCCEEE
Confidence 4566778888999999999999999875 4656667778 33443 4 3567899999998 5 4444
No 195
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=80.47 E-value=16 Score=31.42 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=20.8
Q ss_pred HHHHHHcCCCC----C--cEEEEEeCCCCeeeEEEeCC
Q 013379 229 KKVCTYYKLDS----I--PVVLVVDPITGQKMRSWCGM 260 (444)
Q Consensus 229 ~~~~~~y~~~~----~--P~l~ii~p~tg~~v~~~~G~ 260 (444)
..++..|++.. + |..+||++ +|+++.++.|.
T Consensus 97 ~~~~~~~g~~~~~~~~~~~~~~lid~-~G~v~~~~~~~ 133 (149)
T cd03018 97 GEVAKAYGVFDEDLGVAERAVFVIDR-DGIIRYAWVSD 133 (149)
T ss_pred hHHHHHhCCccccCCCccceEEEECC-CCEEEEEEecC
Confidence 45566676642 2 37888886 68888777764
No 196
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=80.25 E-value=7 Score=30.18 Aligned_cols=63 Identities=21% Similarity=0.062 Sum_probs=46.2
Q ss_pred EECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEc--CCCCCcccCCCCcCCChhhcCCC
Q 013379 371 VRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTH--AIPGATKSLDYDSKLTFEDSGLA 435 (444)
Q Consensus 371 iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~--~fPrr~~~l~~~~~~Tl~e~gL~ 435 (444)
|+||||+.++-....+.+.++|++-|..++.=....-|-|.- .-... ..-.+.+++|.+..-.
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~--~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGE--HHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSS--EEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCc--ceeccCcccHHHHcCC
Confidence 689999999999999999999999998886433455677776 21221 1234678888888755
No 197
>PTZ00256 glutathione peroxidase; Provisional
Probab=80.21 E-value=22 Score=32.36 Aligned_cols=38 Identities=18% Similarity=0.497 Sum_probs=28.9
Q ss_pred CCCCCcE---EEEEeCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 236 KLDSIPV---VLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 236 ~~~~~P~---l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
++..+|. .+|||+ .|.++.++.|.++++.+...|...+
T Consensus 141 ~~~~iP~~~~tflID~-~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 141 EARQIPWNFAKFLIDG-QGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred cCcccCcceEEEEECC-CCCEEEEECCCCCHHHHHHHHHHHh
Confidence 3446784 588886 6999999999888888777776654
No 198
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=79.43 E-value=14 Score=29.27 Aligned_cols=73 Identities=12% Similarity=0.111 Sum_probs=49.6
Q ss_pred eEEEEECCCCc--eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcc--cCCCCcCCChhhcCCCCceEE
Q 013379 367 CRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATK--SLDYDSKLTFEDSGLANAMIS 440 (444)
Q Consensus 367 ~~i~iRlP~G~--r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~--~l~~~~~~Tl~e~gL~~~~v~ 440 (444)
++|.|..+.-+ ..++||..+.||..|-.-|.... |.+....+|.--...... ....+...+|...|+.++..+
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~-Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i 78 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLT-GIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRI 78 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHH-TS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHh-CCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEE
Confidence 56778887774 89999999999999999998854 655556655442111111 112456899999999976644
No 199
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=77.29 E-value=8.3 Score=40.85 Aligned_cols=97 Identities=11% Similarity=0.207 Sum_probs=67.9
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcC--EEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN--FIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~--fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
..+|++.+ ..+.++||-++.+||--|+.+-.+.= .--+.|.++ =|.. +-+|-++-..+|+.|.+..||++
T Consensus 32 ~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey~---kAA~~Lke~~s~i~L-akVDat~~~~~~~~y~v~gyPTl 103 (493)
T KOG0190|consen 32 KDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEYE---KAATELKEEGSPVKL-AKVDATEESDLASKYEVRGYPTL 103 (493)
T ss_pred cccHHHHh----ccCceEEEEEEchhhhhhhhhCcHHH---HHHHHhhccCCCcee-EEeecchhhhhHhhhcCCCCCeE
Confidence 45666655 46788999999999999998843221 222344443 3333 24555555999999999999999
Q ss_pred EEEeCCCCeeeEEEeCCCChHHHHHHHHh
Q 013379 244 LVVDPITGQKMRSWCGMVQPESLLEDLVP 272 (444)
Q Consensus 244 ~ii~p~tg~~v~~~~G~~~~~~~l~~L~~ 272 (444)
-|.- +|.......|.-+++.++..|.+
T Consensus 104 kiFr--nG~~~~~Y~G~r~adgIv~wl~k 130 (493)
T KOG0190|consen 104 KIFR--NGRSAQDYNGPREADGIVKWLKK 130 (493)
T ss_pred EEEe--cCCcceeccCcccHHHHHHHHHh
Confidence 9985 67765566787788887777764
No 200
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=77.22 E-value=13 Score=36.39 Aligned_cols=101 Identities=15% Similarity=0.255 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEe
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~ 247 (444)
.|-+++..+ ...-|++|.|+.+....|..||.-+ ..-...|..-.||=....... ++..|+...+|+|+|.-
T Consensus 135 ~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L--~~LA~kyp~vKFvkI~a~~~~-----~~~~f~~~~LPtllvYk 206 (265)
T PF02114_consen 135 EFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCL--ECLARKYPEVKFVKIRASKCP-----ASENFPDKNLPTLLVYK 206 (265)
T ss_dssp HHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHH--HHHHHH-TTSEEEEEEECGCC-----TTTTS-TTC-SEEEEEE
T ss_pred hHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHH--HHHHHhCCceEEEEEehhccC-----cccCCcccCCCEEEEEE
Confidence 344444322 2346999999999999999997433 233445555667765433221 45678899999999997
Q ss_pred CCCCeeeEEEeCC---CChHHHHHHHHhhhhcCC
Q 013379 248 PITGQKMRSWCGM---VQPESLLEDLVPFMDGGP 278 (444)
Q Consensus 248 p~tg~~v~~~~G~---~~~~~~l~~L~~~l~~~~ 278 (444)
.|.++..+-|. ..-+-+...|..+|..+.
T Consensus 207 --~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 207 --NGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp --TTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred --CCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 79998888774 233455667888887765
No 201
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=76.89 E-value=7.7 Score=26.57 Aligned_cols=62 Identities=18% Similarity=0.146 Sum_probs=40.7
Q ss_pred EEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHH-HHHcCCCCCcEEEEEeCC
Q 013379 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKV-CTYYKLDSIPVVLVVDPI 249 (444)
Q Consensus 184 lVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~-~~~y~~~~~P~l~ii~p~ 249 (444)
|++++..+|..|..+.. ++... ...+.++.+..++.+....... ...+++..+|.+.++++.
T Consensus 1 l~~~~~~~c~~c~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRP-VLAEL---ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhh-HHHHH---HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 35666777878877632 22111 3556778888878766554332 357888999999999863
No 202
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=76.60 E-value=3.7 Score=34.93 Aligned_cols=30 Identities=30% Similarity=0.341 Sum_probs=25.8
Q ss_pred hhcccccCCCHHHHHHHHHHcCCCHHHHHHH
Q 013379 16 SFLEIAVGQTAETAVQFLQATSWKLDEAIQL 46 (444)
Q Consensus 16 ~F~~itt~~~~~~A~~~L~~~~w~le~Av~~ 46 (444)
=-|+= ||.+.+.|+.-|+.||+||-.||-.
T Consensus 90 LV~eQ-a~VsreeA~kAL~e~~GDlaeAIm~ 119 (122)
T COG1308 90 LVMEQ-AGVSREEAIKALEEAGGDLAEAIMK 119 (122)
T ss_pred HHHHH-hCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 34555 8999999999999999999999854
No 203
>PRK13599 putative peroxiredoxin; Provisional
Probab=76.47 E-value=19 Score=33.84 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=26.9
Q ss_pred HHHHHcCCC-------CCcEEEEEeCCCCeeeEEEeCC----CChHHHHHHHHh
Q 013379 230 KVCTYYKLD-------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVP 272 (444)
Q Consensus 230 ~~~~~y~~~-------~~P~l~ii~p~tg~~v~~~~G~----~~~~~~l~~L~~ 272 (444)
.++..|++. ..|.++||+| .|.+...+... ...++++..|..
T Consensus 102 ~va~~yg~~~~~~~~~~~R~tfIID~-dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 102 KVSNQLGMIHPGKGTNTVRAVFIVDD-KGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred hHHHHcCCCccCCCCceeeEEEEECC-CCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 456777762 5799999998 58766554322 245666665543
No 204
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=75.81 E-value=25 Score=26.96 Aligned_cols=69 Identities=20% Similarity=0.217 Sum_probs=40.0
Q ss_pred eCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeC-CCChHHH
Q 013379 188 QSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCG-MVQPESL 266 (444)
Q Consensus 188 ~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G-~~~~~~~ 266 (444)
.+++|..|..+- ..+.+.+.++=+-..+.. ..+...+ ..|++.+.|.+ +|+ |++ ++.| ..+.+++
T Consensus 6 ~~~~C~~C~~~~------~~~~~~~~~~~i~~ei~~-~~~~~~~-~~ygv~~vPal-vIn---g~~--~~~G~~p~~~el 71 (76)
T PF13192_consen 6 FSPGCPYCPELV------QLLKEAAEELGIEVEIID-IEDFEEI-EKYGVMSVPAL-VIN---GKV--VFVGRVPSKEEL 71 (76)
T ss_dssp ECSSCTTHHHHH------HHHHHHHHHTTEEEEEEE-TTTHHHH-HHTT-SSSSEE-EET---TEE--EEESS--HHHHH
T ss_pred eCCCCCCcHHHH------HHHHHHHHhcCCeEEEEE-ccCHHHH-HHcCCCCCCEE-EEC---CEE--EEEecCCCHHHH
Confidence 466699998663 234444443223333322 2444555 99999999999 565 665 4678 5666766
Q ss_pred HHHH
Q 013379 267 LEDL 270 (444)
Q Consensus 267 l~~L 270 (444)
.+.|
T Consensus 72 ~~~l 75 (76)
T PF13192_consen 72 KELL 75 (76)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 205
>CHL00098 tsf elongation factor Ts
Probab=75.50 E-value=3.4 Score=38.54 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=34.0
Q ss_pred HHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 12 ~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
++|.+..+. ||+..-.|+.-|..++||++.|++..=..
T Consensus 3 ~~ik~LR~~-Tgag~~dck~AL~e~~gd~~~A~~~Lr~~ 40 (200)
T CHL00098 3 ELVKELRDK-TGAGMMDCKKALQEANGDFEKALESLRQK 40 (200)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 368888999 99999999999999999999999877554
No 206
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=73.75 E-value=3.8 Score=40.49 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=34.2
Q ss_pred HHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 12 ~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
++|.+..+. ||+..-.|+.-|+.+|||+|.|+...=..
T Consensus 6 ~~IK~LRe~-Tgagm~dCKkAL~e~~gDiekAi~~LRkk 43 (290)
T TIGR00116 6 QLVKELRER-TGAGMMDCKKALTEANGDFEKAIKNLRES 43 (290)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 368899999 99999999999999999999999987553
No 207
>PRK09377 tsf elongation factor Ts; Provisional
Probab=73.29 E-value=4 Score=40.37 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=34.5
Q ss_pred HHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 12 ~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
.+|.+..+. ||+..-.|+.-|+.+|||+|.|+...=..
T Consensus 7 ~~IK~LR~~-Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~ 44 (290)
T PRK09377 7 ALVKELRER-TGAGMMDCKKALTEADGDIEKAIEWLRKK 44 (290)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 478899999 99999999999999999999999988654
No 208
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=73.07 E-value=20 Score=33.22 Aligned_cols=88 Identities=10% Similarity=0.077 Sum_probs=47.0
Q ss_pred CeEEEEEe-CCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhH-------------------------HHHHHH
Q 013379 181 KWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KKVCTY 234 (444)
Q Consensus 181 K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg-------------------------~~~~~~ 234 (444)
||++|+.| .+.|+.|..-...+ +....+|=+.++.+++++.++.+. ..++..
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l--~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~ 103 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAF--AKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKL 103 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHH--HHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHH
Confidence 67655433 45566665432111 111122223466777777665432 345666
Q ss_pred cCCC--------CCcEEEEEeCCCCeeeEEEeCCC----ChHHHHHHHH
Q 013379 235 YKLD--------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLV 271 (444)
Q Consensus 235 y~~~--------~~P~l~ii~p~tg~~v~~~~G~~----~~~~~l~~L~ 271 (444)
|++. ..|.++|||| .|.+...+.+.. +.++++..|.
T Consensus 104 yg~~~~~~~~~~~~r~~fiID~-~G~I~~~~~~~~~~gr~~~ell~~l~ 151 (203)
T cd03016 104 LGMIDPDAGSTLTVRAVFIIDP-DKKIRLILYYPATTGRNFDEILRVVD 151 (203)
T ss_pred cCCccccCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 7753 2457899997 587766665532 4556655554
No 209
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=72.91 E-value=4.4 Score=37.79 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=34.3
Q ss_pred HHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 12 ~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
++|.+..+. ||+..-.|+.-|..++||++.|+...=..
T Consensus 6 ~~ik~LR~~-tga~~~~ck~AL~~~~gd~~~A~~~lr~~ 43 (198)
T PRK12332 6 KLVKELREK-TGAGMMDCKKALEEANGDMEKAIEWLREK 43 (198)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 478888999 99999999999999999999999987654
No 210
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=72.49 E-value=18 Score=31.20 Aligned_cols=66 Identities=11% Similarity=0.126 Sum_probs=43.7
Q ss_pred HHHHHhcC-EEEEEeecCChhHHHHHHHcCCC--CCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhc
Q 013379 208 VSQTISTN-FIFWQVYDDTSEGKKVCTYYKLD--SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 208 V~~~l~~~-fV~w~~~~~s~eg~~~~~~y~~~--~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
|.+-.+.. +.|.-++.+. -..+...+++. .||.++++++..+ +-....|.++.+.+.+.+..+++-
T Consensus 49 vAk~~kgk~i~Fv~vd~~~--~~~~~~~fgl~~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 49 VAEKFKKKPWGWLWTEAGA--QLDLEEALNIGGFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYG 117 (130)
T ss_pred HHHHhcCCcEEEEEEeCcc--cHHHHHHcCCCccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcC
Confidence 33333445 4444334433 33388889984 5999999998655 333366888999888888888764
No 211
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=72.39 E-value=11 Score=29.32 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=37.9
Q ss_pred CCCCchHHHHHHHHhhcC-CC-CCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEE
Q 013379 384 LRTDPIQLLWSYCYSQLE-GS-EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 441 (444)
Q Consensus 384 ~~~~~l~~l~~fv~~~~~-~~-~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v 441 (444)
..++||..|-+-|....+ +. +...++|+.. +|. | +.+.||++.|+. +++|.+
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~--GKi--L--~D~~TL~dygI~~gstlhL 72 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIHC--GRK--L--KDDQTLDFYGIQSGSTIHI 72 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEEeC--CcC--C--CCCCcHHHcCCCCCCEEEE
Confidence 468899999999988742 22 3667889854 664 4 557899999999 455543
No 212
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=71.38 E-value=15 Score=37.53 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=52.3
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhc-CCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEEe
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL-EGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVTW 443 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~-~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~~ 443 (444)
-++||-++|.+ .-.|..+|.+..|..-+.+.+ .++...+|.+.+.--.+-..+....+.|+.|+||.+ .+|.+++
T Consensus 2 i~rfRsk~G~~-Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 2 IFRFRSKEGQR-RVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred eEEEecCCCce-eeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 37899999974 457889999987666554432 356788999888743232223346789999999995 5566655
No 213
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=69.81 E-value=0.89 Score=45.36 Aligned_cols=78 Identities=24% Similarity=0.342 Sum_probs=62.5
Q ss_pred HHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCCh------hHHHHHHHcCCC--CCcEEEEEeC
Q 013379 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS------EGKKVCTYYKLD--SIPVVLVVDP 248 (444)
Q Consensus 177 ~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~------eg~~~~~~y~~~--~~P~l~ii~p 248 (444)
+-..+||.|.++..-.++|+.++...|..+.++.++-+++.+|.+...++ ++++....+... ..++..+++|
T Consensus 8 ~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~~~~~~~s~~~~a~sp~~~~re~l~~~~~~~d~~~~s~~~p 87 (356)
T KOG1364|consen 8 ALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHGGFTQVYSSSSAAPSPIEPQREVLFDPLGIMDQSTSSILDP 87 (356)
T ss_pred HHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhcccccccCCcccCCCcccccceeeeccccccccCcccccCc
Confidence 44567889999888899999999999999999999999999998776333 334555555554 7899999999
Q ss_pred CCCeee
Q 013379 249 ITGQKM 254 (444)
Q Consensus 249 ~tg~~v 254 (444)
.+|+..
T Consensus 88 ~~~~~~ 93 (356)
T KOG1364|consen 88 SENQDD 93 (356)
T ss_pred ccccch
Confidence 887543
No 214
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=68.87 E-value=34 Score=31.08 Aligned_cols=70 Identities=20% Similarity=0.121 Sum_probs=48.5
Q ss_pred ceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC
Q 013379 366 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 435 (444)
Q Consensus 366 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~ 435 (444)
...|+|.||||+.+.-++..+.++++|..-|...+.-....-|.|...-+........+...+|.+....
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 4689999999999999999999999999998887532234556666543322110123456677776643
No 215
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=68.67 E-value=25 Score=33.89 Aligned_cols=41 Identities=20% Similarity=0.371 Sum_probs=31.7
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHH
Q 013379 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 271 (444)
Q Consensus 229 ~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~ 271 (444)
..+++.+++...|++++.+. +|+ +..+.|..+++.|.+.|.
T Consensus 209 ~~l~~~lGv~GTPaiv~~d~-~G~-~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 209 QKLMDDLGANATPAIYYMDK-DGT-LQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred HHHHHHcCCCCCCEEEEECC-CCC-EEEecCCCCHHHHHHHhC
Confidence 34667889999999999985 453 456789999988887664
No 216
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=68.44 E-value=78 Score=27.33 Aligned_cols=98 Identities=13% Similarity=0.191 Sum_probs=65.5
Q ss_pred HHHHH--HHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCC
Q 013379 172 AKDAA--SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI 249 (444)
Q Consensus 172 A~~~A--~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~ 249 (444)
++.+| ..+.|.++|-+-.++...|-.++ ++| ..+.+-+++.-++|-++++ +-..+.+.|.+...|.+.+.-..
T Consensus 13 ~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD-~~L--~~i~~~vsnfa~Iylvdid--eV~~~~~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 13 EVDQAILSTEERLVVIRFGRDWDPTCMKMD-ELL--SSIAEDVSNFAVIYLVDID--EVPDFVKMYELYDPPTVMFFFNN 87 (142)
T ss_pred HHHHHHhcccceEEEEEecCCCCchHhhHH-HHH--HHHHHHHhhceEEEEEecc--hhhhhhhhhcccCCceEEEEEcC
Confidence 34444 36678888888888888898874 222 2344455666788877776 66778889999999988765432
Q ss_pred --------CCeeeEEEeCC-CChHHHHHHHHhhhh
Q 013379 250 --------TGQKMRSWCGM-VQPESLLEDLVPFMD 275 (444)
Q Consensus 250 --------tg~~v~~~~G~-~~~~~~l~~L~~~l~ 275 (444)
||. -..|.|. -+.++|+..+..+..
T Consensus 88 kHmkiD~gtgd-n~Kin~~~~~kq~~Idiie~iyR 121 (142)
T KOG3414|consen 88 KHMKIDLGTGD-NNKINFAFEDKQEFIDIIETIYR 121 (142)
T ss_pred ceEEEeeCCCC-CceEEEEeccHHHHHHHHHHHHH
Confidence 221 1234443 378889988876654
No 217
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=68.21 E-value=36 Score=32.41 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=28.8
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHh
Q 013379 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 272 (444)
Q Consensus 229 ~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~ 272 (444)
..+++.+++...|++++- +|++ +.|..+++.|...|..
T Consensus 192 ~~la~~lgi~gTPtiv~~---~G~~---~~G~~~~~~L~~~l~~ 229 (232)
T PRK10877 192 YALGVQFGVQGTPAIVLS---NGTL---VPGYQGPKEMKAFLDE 229 (232)
T ss_pred HHHHHHcCCccccEEEEc---CCeE---eeCCCCHHHHHHHHHH
Confidence 556778899999998854 3654 4799999988877754
No 218
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=66.55 E-value=14 Score=27.92 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=36.9
Q ss_pred CCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCce
Q 013379 373 LPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAM 438 (444)
Q Consensus 373 lP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~ 438 (444)
.++|+|..-+...+.+|.+|.+=+-.+. +.+...|.|... ++. .|.+.++.=+||.+.+
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~-~l~~~~~~L~h~--~k~----ldlslp~R~snL~n~a 61 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKF-GLDPSSYDLKHN--NKP----LDLSLPFRLSNLPNNA 61 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHT-T--GGG-EEEET--TEE----ESSS-BHHHH---SS-
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHc-CCCccceEEEEC--CEE----eccccceeecCCCCCC
Confidence 4789999999999999999999876653 566779999986 332 3889999999998544
No 219
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=66.51 E-value=51 Score=27.49 Aligned_cols=81 Identities=14% Similarity=0.138 Sum_probs=49.3
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc---CEEEEEeec--CChhHHHHHHHcCCC-CCcEEEEEeCCCC
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYD--DTSEGKKVCTYYKLD-SIPVVLVVDPITG 251 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~--~s~eg~~~~~~y~~~-~~P~l~ii~p~tg 251 (444)
...++++|+=|+..|.-|.+-- ..+..+++. ..-+|-+++ ..+-...++..|+|. .=|-+++|. +|
T Consensus 17 S~~~~~~iFKHSt~C~IS~~a~------~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~--~g 88 (105)
T PF11009_consen 17 SKEKPVLIFKHSTRCPISAMAL------REFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIK--NG 88 (105)
T ss_dssp ---SEEEEEEE-TT-HHHHHHH------HHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEE--TT
T ss_pred cccCcEEEEEeCCCChhhHHHH------HHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEE--CC
Confidence 4489999999999998877643 456666653 244444454 334456788899995 589999997 69
Q ss_pred eeeEEEeC-CCChHHH
Q 013379 252 QKMRSWCG-MVQPESL 266 (444)
Q Consensus 252 ~~v~~~~G-~~~~~~~ 266 (444)
++++.-+. .++.+.+
T Consensus 89 ~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 89 KVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEEEEGGG-SHHHH
T ss_pred EEEEECccccCCHHhc
Confidence 98876653 4676654
No 220
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=65.44 E-value=8.2 Score=21.49 Aligned_cols=16 Identities=44% Similarity=0.551 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHhHHH
Q 013379 307 IENEELLQALAASMET 322 (444)
Q Consensus 307 ~qde~~~~al~~sl~~ 322 (444)
++|+++++||+.|++.
T Consensus 2 ~Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 2 DEDEDLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhhcc
Confidence 6789999999999875
No 221
>PLN02560 enoyl-CoA reductase
Probab=65.11 E-value=37 Score=33.89 Aligned_cols=72 Identities=17% Similarity=0.126 Sum_probs=47.5
Q ss_pred EEEEECCCCceE---EEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcC----CCCCcccCCCCcCCChhhcCCCC-ceE
Q 013379 368 RVGVRLPDGRRM---QRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA----IPGATKSLDYDSKLTFEDSGLAN-AMI 439 (444)
Q Consensus 368 ~i~iRlP~G~r~---~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~----fPrr~~~l~~~~~~Tl~e~gL~~-~~v 439 (444)
+|.|+..+|+.+ .-....+.||.+|..-+.....-.....-+|.-. =|+. ...+.++||.|.|+.. ++|
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g---~~L~d~ktL~d~gv~~gstL 78 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRP---TVLDDSKSLKDYGLGDGGTV 78 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCc---cccCCCCCHHhcCCCCCceE
Confidence 477888889876 4678899999999999987632223344555521 1222 1234577999999984 556
Q ss_pred EEE
Q 013379 440 SVT 442 (444)
Q Consensus 440 ~v~ 442 (444)
.|+
T Consensus 79 y~k 81 (308)
T PLN02560 79 VFK 81 (308)
T ss_pred EEE
Confidence 554
No 222
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=65.09 E-value=17 Score=26.92 Aligned_cols=39 Identities=28% Similarity=0.346 Sum_probs=34.4
Q ss_pred HHHHHhhcccccCC-CHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 11 QSMVSSFLEIAVGQ-TAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 11 ~~~i~~F~~itt~~-~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
...|+...+| +|+ +++.--..|..||-|.+.|++..++.
T Consensus 6 rk~VQ~iKEi-v~~hse~eIya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 6 RKTVQSIKEI-VGCHSEEEIYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred HHHHHHHHHH-hcCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 4488899999 666 99999999999999999999998874
No 223
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=65.07 E-value=17 Score=25.66 Aligned_cols=41 Identities=12% Similarity=0.219 Sum_probs=33.9
Q ss_pred HHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 10 ~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
.+++|.+-..+--|.+.++-++-|+++|-|+..||+..++.
T Consensus 9 PedlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T PF11547_consen 9 PEDLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp -HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhcc
Confidence 36688888888789999999999999999999999988764
No 224
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=64.19 E-value=4.2 Score=39.42 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=32.0
Q ss_pred hhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 16 SFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 16 ~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
.|.++|+.+++..|..+|...+|+++.|++.||..
T Consensus 30 ~efa~~~s~dea~aq~~l~~~dw~~~ral~~~~~s 64 (349)
T KOG2756|consen 30 VEFASVASCDAAVAQCFLAENDWEMERALNSYFEP 64 (349)
T ss_pred HHHHHhhhhHHHhHHHHhhcchhHHHHHHHhhcCc
Confidence 66677689999999999999999999999999983
No 225
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=64.19 E-value=29 Score=26.75 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=36.6
Q ss_pred CCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 384 LRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 384 ~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
..+.||.+|...+......+......|.-.+.++. | ..+.||.+.|+.. ++|.|+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~--L--~d~~tL~~~gv~~g~~lyvK 75 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKS--L--KDDDTLVDLGVGAGATLYVR 75 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcc--c--CCcccHhhcCCCCCCEEEEe
Confidence 45578999999988764333445666765555553 4 3456899999984 455553
No 226
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=61.96 E-value=42 Score=24.46 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=34.2
Q ss_pred EEEeCCCchhhHHHHhhccCChhHHHHH--hcCEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013379 185 VNLQSTKEFSSHMLNRDTWANEAVSQTI--STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (444)
Q Consensus 185 Vyl~~~~~~~~~~f~rdv~~~~~V~~~l--~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~i 245 (444)
+.++.++|..|+.+.+ .+.++. ..++-+..++++.. ..++..|++.+.|+++|
T Consensus 4 ~~f~~~~C~~C~~~~~------~l~~l~~~~~~i~~~~id~~~~--~~l~~~~~i~~vPti~i 58 (67)
T cd02973 4 EVFVSPTCPYCPDAVQ------AANRIAALNPNISAEMIDAAEF--PDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEECCCCCCcHHHHH------HHHHHHHhCCceEEEEEEcccC--HhHHHHcCCcccCEEEE
Confidence 4556778999987732 222221 23466666666543 34788999999999865
No 227
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=61.27 E-value=11 Score=37.11 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=34.2
Q ss_pred HHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 12 ~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
.+|....+. ||+..-.|++-|+.+++|+|.||...=..
T Consensus 7 ~~VKeLRe~-TgAGMmdCKkAL~E~~Gd~EkAie~LR~k 44 (296)
T COG0264 7 ALVKELREK-TGAGMMDCKKALEEANGDIEKAIEWLREK 44 (296)
T ss_pred HHHHHHHHH-hCCcHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 478888999 99999999999999999999999977554
No 228
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=60.86 E-value=13 Score=26.61 Aligned_cols=25 Identities=16% Similarity=0.482 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Q 013379 23 GQTAETAVQFLQATSWKLDEAIQLF 47 (444)
Q Consensus 23 ~~~~~~A~~~L~~~~w~le~Av~~~ 47 (444)
..+.....+||.+.+||++.|+..+
T Consensus 28 ~~~d~~llRFLRARkf~v~~A~~mL 52 (55)
T PF03765_consen 28 DHDDNFLLRFLRARKFDVEKAFKML 52 (55)
T ss_dssp S-SHHHHHHHHHHTTT-HHHHHHHH
T ss_pred CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 4577899999999999999999876
No 229
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=56.37 E-value=18 Score=30.91 Aligned_cols=79 Identities=20% Similarity=0.159 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhcc-CChhHHHHHh---cCEEEEEeecCChhHH-----HHHH--HcCC
Q 013379 169 FEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTW-ANEAVSQTIS---TNFIFWQVYDDTSEGK-----KVCT--YYKL 237 (444)
Q Consensus 169 ~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~-~~~~V~~~l~---~~fV~w~~~~~s~eg~-----~~~~--~y~~ 237 (444)
|.++++.....++.++|++.++.....+..|.|.- ..+-|.+.+. ++.++..+.+.+...+ .+.+ .+++
T Consensus 8 ~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l 87 (119)
T PF06110_consen 8 FEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKL 87 (119)
T ss_dssp HHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC--
T ss_pred HHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeee
Confidence 45555555667899999888753222222222221 2344555554 4677776766555432 2333 6889
Q ss_pred CCCcEEEEEe
Q 013379 238 DSIPVVLVVD 247 (444)
Q Consensus 238 ~~~P~l~ii~ 247 (444)
..+|+|+-+.
T Consensus 88 ~~IPTLi~~~ 97 (119)
T PF06110_consen 88 KGIPTLIRWE 97 (119)
T ss_dssp -SSSEEEECT
T ss_pred eecceEEEEC
Confidence 9999999886
No 230
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=56.10 E-value=12 Score=37.04 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=33.1
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (444)
..+|.+..+= ||++...|++-|+.|||||..|..---.
T Consensus 47 ~allk~LR~k-Tgas~~ncKkALee~~gDl~~A~~~L~k 84 (340)
T KOG1071|consen 47 KALLKKLREK-TGASMVNCKKALEECGGDLVLAEEWLHK 84 (340)
T ss_pred HHHHHHHHHH-cCCcHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 4588899999 9999999999999999999998764443
No 231
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=55.62 E-value=13 Score=22.82 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHhHHHhh
Q 013379 307 IENEELLQALAASMETIK 324 (444)
Q Consensus 307 ~qde~~~~al~~sl~~~~ 324 (444)
.+|+++++|++.|+...+
T Consensus 1 ~EDe~Lq~Ai~lSl~e~e 18 (26)
T smart00726 1 DEDEDLQLALELSLQEAE 18 (26)
T ss_pred ChHHHHHHHHHHhHHHhh
Confidence 368899999999998754
No 232
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=55.52 E-value=99 Score=24.32 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=47.6
Q ss_pred eEEEEECCC-CceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCccc--CCCCcCCChhhcCCCC-ceEEE
Q 013379 367 CRVGVRLPD-GRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKS--LDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 367 ~~i~iRlP~-G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~--l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
++|.|.-+. ....+|||..+.||..|-.=+... .|.+...-+|.- |..+... ...+.+.+|...|+.+ ..|.|
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~-~G~~~~~mrL~l-~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhV 78 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELV-VGTPASSMRLQL-FDGDDKLVSKLDDDDALLGSYPVDDGCRIHV 78 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHH-HCCCccceEEEE-EcCCCCeEeecCCCccEeeeccCCCCCEEEE
Confidence 345565543 446899999999999999988775 354555555532 2333111 1246788999999985 44554
No 233
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=53.49 E-value=35 Score=33.07 Aligned_cols=48 Identities=17% Similarity=0.360 Sum_probs=32.1
Q ss_pred HHHHHHcCC---------------CCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 229 KKVCTYYKL---------------DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 229 ~~~~~~y~~---------------~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
.++|+.|+| ++-=++.+|+| .|+-+...--+-+++++...|.+-+..+
T Consensus 216 k~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidP-eg~Fvd~~GrN~~~~~~~~~I~~~v~~y 278 (280)
T KOG2792|consen 216 KQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDP-EGEFVDYYGRNYDADELADSILKHVASY 278 (280)
T ss_pred HHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECC-CcceehhhcccCCHHHHHHHHHHHHHhc
Confidence 567777775 23346788998 5776654422578898888877665544
No 234
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=52.87 E-value=29 Score=27.81 Aligned_cols=34 Identities=9% Similarity=0.201 Sum_probs=30.9
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhc
Q 013379 367 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL 400 (444)
Q Consensus 367 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~ 400 (444)
+.|+|=||||+++.-+-..+++...||+=+...+
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl 35 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKA 35 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHh
Confidence 4689999999999999999999999999987764
No 235
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=52.84 E-value=61 Score=26.79 Aligned_cols=56 Identities=13% Similarity=0.017 Sum_probs=40.0
Q ss_pred EeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCceEEEEe
Q 013379 382 NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTW 443 (444)
Q Consensus 382 rF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v~v~~ 443 (444)
.-+.++||..|-.-|...+ +..+..=.|+.. ++. | .|.+.||.+.|+.+++++.-|
T Consensus 20 ~V~~~~TVg~LK~lImQ~f-~V~P~dQkL~~d--G~~--L-~DDsrTLssyGv~sgSvl~Ll 75 (107)
T cd01795 20 LVSANQTLKELKIQIMHAF-SVAPFDQNLSID--GKI--L-SDDCATLGTLGVIPESVILLK 75 (107)
T ss_pred EeCccccHHHHHHHHHHHh-cCCcccceeeec--Cce--e-ccCCccHHhcCCCCCCEEEEE
Confidence 3678899999988887764 333333367776 553 6 478999999999987765544
No 236
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=49.30 E-value=22 Score=36.57 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=36.3
Q ss_pred HhhcCCCccCcccCcHHHHHHHHHHcCCeEEEEEeCCCc
Q 013379 154 ASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKE 192 (444)
Q Consensus 154 ~~~f~pp~~~~~~gs~~~A~~~A~~~~K~LlVyl~~~~~ 192 (444)
++.|+|-.||+---+++||++.=.++-|||..|+-+.++
T Consensus 334 eEIFGPiLPIi~v~~l~Eai~~In~~eKPLa~Y~Fs~n~ 372 (477)
T KOG2456|consen 334 EEIFGPILPIITVQSLDEAINFINEREKPLALYIFSNNE 372 (477)
T ss_pred hhhccCccceeEhhhHHHHHHHHhcCCCceEEEEecCCH
Confidence 599999999999999999999999999999999998743
No 237
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.05 E-value=7.9 Score=37.41 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=33.2
Q ss_pred HHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 013379 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFY 48 (444)
Q Consensus 10 ~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~ 48 (444)
..+++.+||.. |.++..++..+|.+++|++..|....|
T Consensus 8 ~~d~~~~~~~~-~~~~~~~s~~~~~~~dw~~~~~~~~s~ 45 (260)
T KOG3077|consen 8 QKDKFEQFMSF-TASRKKTSLSCLAACDWNLKYAFNDSY 45 (260)
T ss_pred HHHHHHhhccc-ccccchhhhhhhcccccccchhcccch
Confidence 35599999999 999999999999999999999944444
No 238
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=48.55 E-value=50 Score=27.50 Aligned_cols=45 Identities=9% Similarity=0.032 Sum_probs=30.8
Q ss_pred HHHHcCCCC--CcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 231 VCTYYKLDS--IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 231 ~~~~y~~~~--~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
++..++++. +|.++|++...+.+-.-..+.++++.+...+..+++
T Consensus 63 ~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 63 PLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred HHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 778888865 999999997432222114566788877777776654
No 239
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=45.55 E-value=1.2e+02 Score=25.32 Aligned_cols=63 Identities=21% Similarity=0.213 Sum_probs=37.2
Q ss_pred hHHHHHh-cCEEEEEeecCChhHHHHHHHcCCC--C--CcEEEEEeCCCCeeeEEEeCCC-ChHHHHHHHHhh
Q 013379 207 AVSQTIS-TNFIFWQVYDDTSEGKKVCTYYKLD--S--IPVVLVVDPITGQKMRSWCGMV-QPESLLEDLVPF 273 (444)
Q Consensus 207 ~V~~~l~-~~fV~w~~~~~s~eg~~~~~~y~~~--~--~P~l~ii~p~tg~~v~~~~G~~-~~~~~l~~L~~~ 273 (444)
.|..-.+ ..++|.- ++..+...+...+++. . +|.++|++. .+. -....+.+ +++.+.+.+..+
T Consensus 42 ~vAk~fk~gki~Fv~--~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~-~~~-KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 42 KVAKDFPDRKLNFAV--ADKEDFSHELEEFGLDFSGGEKPVVAIRTA-KGK-KYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred HHHHHCcCCeEEEEE--EcHHHHHHHHHHcCCCcccCCCCEEEEEeC-CCC-ccCCCcccCCHHHHHHHHHHh
Confidence 3444445 4555553 3444444478899986 4 999999985 342 22245556 777666655544
No 240
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=44.40 E-value=1.4e+02 Score=32.15 Aligned_cols=80 Identities=20% Similarity=0.124 Sum_probs=54.3
Q ss_pred HHcCCeEEEEE-eCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCee
Q 013379 177 SVQDKWLLVNL-QSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 253 (444)
Q Consensus 177 ~~~~K~LlVyl-~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~ 253 (444)
++=.|++-|-+ .++.|..|....+ .+.++..+ +.-.- -++..+-..++..|++.+.|+++| +|++
T Consensus 472 ~~~~~~~~i~v~~~~~C~~Cp~~~~------~~~~~~~~~~~i~~~--~i~~~~~~~~~~~~~v~~vP~~~i----~~~~ 539 (555)
T TIGR03143 472 KKITKPVNIKIGVSLSCTLCPDVVL------AAQRIASLNPNVEAE--MIDVSHFPDLKDEYGIMSVPAIVV----DDQQ 539 (555)
T ss_pred HhcCCCeEEEEEECCCCCCcHHHHH------HHHHHHHhCCCceEE--EEECcccHHHHHhCCceecCEEEE----CCEE
Confidence 44457776655 6888999987643 23344443 34444 334455568899999999999986 4655
Q ss_pred eEEEeCCCChHHHHHHH
Q 013379 254 MRSWCGMVQPESLLEDL 270 (444)
Q Consensus 254 v~~~~G~~~~~~~l~~L 270 (444)
+ +.|..+.++++..|
T Consensus 540 ~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 540 V--YFGKKTIEEMLELI 554 (555)
T ss_pred E--EeeCCCHHHHHHhh
Confidence 4 56988999998876
No 241
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=44.31 E-value=61 Score=34.50 Aligned_cols=97 Identities=15% Similarity=0.163 Sum_probs=62.0
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
-+|++ .+..++|=+||-++.+||.-|..|.. + =+++-+.++ ++.|+-.+|....|- ...+++.||+|+
T Consensus 374 knfd~---iv~de~KdVLvEfyAPWCgHCk~laP-~--~eeLAe~~~~~~~vviAKmDaTaNd~----~~~~~~~fPTI~ 443 (493)
T KOG0190|consen 374 KNFDD---IVLDEGKDVLVEFYAPWCGHCKALAP-I--YEELAEKYKDDENVVIAKMDATANDV----PSLKVDGFPTIL 443 (493)
T ss_pred cCHHH---HhhccccceEEEEcCcccchhhhhhh-H--HHHHHHHhcCCCCcEEEEeccccccC----ccccccccceEE
Confidence 35554 56678888999999999999998831 1 244555554 467888888776662 244667899999
Q ss_pred EEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 245 VVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
+.--...+......|.-+.+. |..|+..+
T Consensus 444 ~~pag~k~~pv~y~g~R~le~----~~~fi~~~ 472 (493)
T KOG0190|consen 444 FFPAGHKSNPVIYNGDRTLED----LKKFIKKS 472 (493)
T ss_pred EecCCCCCCCcccCCCcchHH----HHhhhccC
Confidence 885322123334456555444 44565554
No 242
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=44.11 E-value=1.7e+02 Score=29.80 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=57.3
Q ss_pred HHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHH----HHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCC
Q 013379 176 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQ----TISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITG 251 (444)
Q Consensus 176 A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~----~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg 251 (444)
+.+..+.|.||.|.+.. .....-+..-..+.|.+ .+.+.=|-++ -+++..-.++++.+++..-+.|.|.. .|
T Consensus 47 ~lKkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg-~VD~~Kd~klAKKLgv~E~~SiyVfk--d~ 122 (383)
T PF01216_consen 47 ALKKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFG-MVDSKKDAKLAKKLGVEEEGSIYVFK--DG 122 (383)
T ss_dssp HHHH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEE-EEETTTTHHHHHHHT--STTEEEEEE--TT
T ss_pred HHHhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceE-EeccHHHHHHHHhcCccccCcEEEEE--CC
Confidence 56678999999998742 22222222212232333 3334333333 45566678899999999999999986 57
Q ss_pred eeeEEEeCCCChHHHHHHHHhhhh
Q 013379 252 QKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 252 ~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
+++. ..|..+++.|++.|...++
T Consensus 123 ~~IE-ydG~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 123 EVIE-YDGERSADTLVEFLLDLLE 145 (383)
T ss_dssp EEEE-E-S--SHHHHHHHHHHHHS
T ss_pred cEEE-ecCccCHHHHHHHHHHhcc
Confidence 7664 4599999999999998887
No 243
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=42.82 E-value=1.3e+02 Score=23.01 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=42.6
Q ss_pred CCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCChhHHHHHHHcC--CCCCcEEEEEe
Q 013379 180 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYK--LDSIPVVLVVD 247 (444)
Q Consensus 180 ~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s~eg~~~~~~y~--~~~~P~l~ii~ 247 (444)
+++++|++.+++|..|..+ .+.+.++-+. ...+..++..+ ........|+ +..+|.+.+..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~------~~~l~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~p~~~~~~ 97 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAE------APLLEELAEEYGGDVEVVAVNVDD-ENPDLAAEFGVAVRSIPTLLLFK 97 (127)
T ss_pred CceEEEEEEcCcCHHHHhh------chhHHHHHHHhcCCcEEEEEECCC-CChHHHHHHhhhhccCCeEEEEe
Confidence 7888888779999999987 4555555553 35666556641 4556667777 78889887554
No 244
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=41.81 E-value=2.3e+02 Score=24.64 Aligned_cols=91 Identities=11% Similarity=0.138 Sum_probs=57.4
Q ss_pred HHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEE-E--------e
Q 013379 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV-V--------D 247 (444)
Q Consensus 177 ~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~i-i--------~ 247 (444)
.++.|.++|-+-.+++..|..+.. +| ..+.+-+++..++|.++.+. -..+-+.|.+. -|+-.+ . |
T Consensus 17 ~e~drvvViRFG~d~d~~Cm~mDe-iL--~~~a~~v~~~a~IY~vDi~~--Vpdfn~~yel~-dP~tvmFF~rnkhm~vD 90 (133)
T PF02966_consen 17 SEEDRVVVIRFGRDWDPVCMQMDE-IL--YKIAEKVKNFAVIYLVDIDE--VPDFNQMYELY-DPCTVMFFFRNKHMMVD 90 (133)
T ss_dssp H-SSSEEEEEEE-TTSHHHHHHHH-HH--HHHHHHHTTTEEEEEEETTT--THCCHHHTTS--SSEEEEEEETTEEEEEE
T ss_pred ccCceEEEEEeCCCCCccHHHHHH-HH--HHHHHHhhcceEEEEEEccc--chhhhcccccC-CCeEEEEEecCeEEEEE
Confidence 467899999999999999998853 22 24455677889999888764 44466778876 675333 3 2
Q ss_pred CCCCeeeEEEeCC-CChHHHHHHHHhhh
Q 013379 248 PITGQKMRSWCGM-VQPESLLEDLVPFM 274 (444)
Q Consensus 248 p~tg~~v~~~~G~-~~~~~~l~~L~~~l 274 (444)
.-||.- ..|.+. .+.++|+..+..+.
T Consensus 91 ~Gtgnn-nKin~~~~~kqe~iDiie~iy 117 (133)
T PF02966_consen 91 FGTGNN-NKINWAFEDKQEFIDIIETIY 117 (133)
T ss_dssp SSSSSS-SSBCS--SCHHHHHHHHHHHH
T ss_pred ecCCCc-cEEEEEcCcHHHHHHHHHHHH
Confidence 223321 123343 36889998877664
No 245
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=41.30 E-value=37 Score=33.08 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=33.4
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
+..+.-.|++ ||++.+.|.++|+.++.++-.||-+....
T Consensus 234 dRa~RIv~~a-T~~~~~~A~~~L~~~~~~vK~AIvm~~~~ 272 (298)
T COG2103 234 DRAVRIVMEA-TGCSAEEAEALLEEAGGNVKLAIVMLLTG 272 (298)
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCccHhHHHHHHhC
Confidence 3456667888 99999999999999999999999988764
No 246
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=40.97 E-value=29 Score=34.44 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=32.3
Q ss_pred HHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 13 MVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 13 ~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
.+.-.+.+ ||++.+.|...|+.++|++-.||-.....
T Consensus 238 a~~i~~~~-~~~~~~~a~~~l~~~~~~vk~a~~~~~~~ 274 (299)
T PRK05441 238 AVRIVMEA-TGVSREEAEAALEAADGSVKLAIVMILTG 274 (299)
T ss_pred HHHHHHHH-HCcCHHHHHHHHHHhCCCcHHHHHHHHhC
Confidence 44557888 99999999999999999999999988664
No 247
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=40.73 E-value=25 Score=23.76 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=21.2
Q ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHH
Q 013379 22 VGQTAETAVQFLQATSWKLDEAIQLF 47 (444)
Q Consensus 22 t~~~~~~A~~~L~~~~w~le~Av~~~ 47 (444)
-.....+=...|+.|++|+=.||+.+
T Consensus 13 P~~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 13 PHQKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred CCCChHHHHHHHHHcCCcHHHHHHHh
Confidence 34456677789999999999999876
No 248
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=40.37 E-value=1.4e+02 Score=21.47 Aligned_cols=66 Identities=12% Similarity=0.183 Sum_probs=39.3
Q ss_pred EEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCC--hhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCC
Q 013379 186 NLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDT--SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ 262 (444)
Q Consensus 186 yl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s--~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~ 262 (444)
-++.++|..|+.. ..++++ +.-+..++++. .....+...+++..+|.+.+ + |+. +.|. +
T Consensus 4 lf~~~~C~~C~~~----------~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~-~---~~~---~~g~-~ 65 (74)
T TIGR02196 4 VYTTPWCPPCKKA----------KEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI-G---HKI---IVGF-D 65 (74)
T ss_pred EEcCCCChhHHHH----------HHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE-C---CEE---EeeC-C
Confidence 4455678888765 233332 33344456644 23445778899999999875 2 543 6673 6
Q ss_pred hHHHHHH
Q 013379 263 PESLLED 269 (444)
Q Consensus 263 ~~~~l~~ 269 (444)
++.+...
T Consensus 66 ~~~i~~~ 72 (74)
T TIGR02196 66 PEKLDQL 72 (74)
T ss_pred HHHHHHH
Confidence 6655543
No 249
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=37.64 E-value=56 Score=28.10 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=38.4
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcC-EEEEEeecCChhHHHHHHHc---CCCCCcEEEEEeCCCCee
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN-FIFWQVYDDTSEGKKVCTYY---KLDSIPVVLVVDPITGQK 253 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~-fV~w~~~~~s~eg~~~~~~y---~~~~~P~l~ii~p~tg~~ 253 (444)
-..+.-++.+..++|.+|.... |-+..+...+ -+-..+ +...+...+...| +....|.++|++. .|+.
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~v------P~l~kiae~~p~i~~~~-i~rd~~~el~~~~lt~g~~~IP~~I~~d~-~~~~ 110 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNV------PVLAKIAEANPNIEVRI-ILRDENKELMDQYLTNGGRSIPTFIFLDK-DGKE 110 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHH------HHHHHHHHH-TTEEEEE-E-HHHHHHHTTTTTT-SS--SSEEEEE-T-T--E
T ss_pred cCCCcEEEEEECCCchhHHHHH------HHHHHHHHhCCCCeEEE-EEecCChhHHHHHHhCCCeecCEEEEEcC-CCCE
Confidence 3445566677889999999875 6666666644 222211 1223334444444 4568999999996 4899
Q ss_pred eEEEeC
Q 013379 254 MRSWCG 259 (444)
Q Consensus 254 v~~~~G 259 (444)
+.+|-.
T Consensus 111 lg~wge 116 (129)
T PF14595_consen 111 LGRWGE 116 (129)
T ss_dssp EEEEES
T ss_pred eEEEcC
Confidence 999854
No 250
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=36.61 E-value=87 Score=31.07 Aligned_cols=102 Identities=11% Similarity=0.181 Sum_probs=65.6
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
+-.++++-...-|.++-|+ |.++.++|--|..+. -||. +|---+++ +--+--+..+-+.-..+++.+++..||+|
T Consensus 29 ~VeDLddkFkdnkdddiW~-VdFYAPWC~HCKkLe-PiWd--eVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTI 104 (468)
T KOG4277|consen 29 AVEDLDDKFKDNKDDDIWF-VDFYAPWCAHCKKLE-PIWD--EVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTI 104 (468)
T ss_pred hhhhhhHHhhhcccCCeEE-EEeechhhhhccccc-chhH--HhCcchhhcCCceeecccccccchhhHhhhccCCCceE
Confidence 4455666666666777775 889999999999883 4552 34333443 22222223344555668899999999999
Q ss_pred EEEeCCCCeeeEEEeCCCChHHHHHHHHhh
Q 013379 244 LVVDPITGQKMRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 244 ~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~ 273 (444)
.++. |-......|.-+.+.+++....+
T Consensus 105 k~~k---gd~a~dYRG~R~Kd~iieFAhR~ 131 (468)
T KOG4277|consen 105 KFFK---GDHAIDYRGGREKDAIIEFAHRC 131 (468)
T ss_pred EEec---CCeeeecCCCccHHHHHHHHHhc
Confidence 9986 33444556777777777655543
No 251
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=36.50 E-value=1.5e+02 Score=24.80 Aligned_cols=47 Identities=9% Similarity=0.161 Sum_probs=34.7
Q ss_pred HhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCC
Q 013379 212 ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ 262 (444)
Q Consensus 212 l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~ 262 (444)
....+-.+ -+.......+...|++..+|.++++- .|+.+..++|..+
T Consensus 57 f~~~~~~a--vv~~~~e~~L~~r~gv~~~PaLvf~R--~g~~lG~i~gi~d 103 (107)
T PF07449_consen 57 FPGRFRGA--VVARAAERALAARFGVRRWPALVFFR--DGRYLGAIEGIRD 103 (107)
T ss_dssp STTSEEEE--EEEHHHHHHHHHHHT-TSSSEEEEEE--TTEEEEEEESSST
T ss_pred hhCccceE--EECchhHHHHHHHhCCccCCeEEEEE--CCEEEEEecCeec
Confidence 33455444 33456667899999999999999996 6999999998654
No 252
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=36.40 E-value=2.6e+02 Score=23.50 Aligned_cols=90 Identities=10% Similarity=0.154 Sum_probs=46.6
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCC-----------hhHHHHHHHcCCCCCcEE-EE
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-----------SEGKKVCTYYKLDSIPVV-LV 245 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s-----------~eg~~~~~~y~~~~~P~l-~i 245 (444)
.++|+|+|+=-+..+..-... .+.|.+ .-..+...+.+++.+ ... .....+.+.|++..-.+- ++
T Consensus 8 w~~R~lvv~aps~~d~~~~~q-~~~L~~-~~~~l~eRdi~v~~i-~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vL 84 (118)
T PF13778_consen 8 WKNRLLVVFAPSADDPRYQQQ-LEELQN-NRCGLDERDIVVIVI-TGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVL 84 (118)
T ss_pred CcCceEEEECCCCCCHHHHHH-HHHHHh-hhhccccCceEEEEE-eCCccccccCcCCHHHHHHHHHHhCCCCCceEEEE
Confidence 456777766544433222211 122222 122333445555544 222 222477888997643344 44
Q ss_pred EeCCCCeeeEEEeCCCChHHHHHHHH
Q 013379 246 VDPITGQKMRSWCGMVQPESLLEDLV 271 (444)
Q Consensus 246 i~p~tg~~v~~~~G~~~~~~~l~~L~ 271 (444)
|+ ..|.+-.++.+.++++++...+.
T Consensus 85 iG-KDG~vK~r~~~p~~~~~lf~~ID 109 (118)
T PF13778_consen 85 IG-KDGGVKLRWPEPIDPEELFDTID 109 (118)
T ss_pred Ee-CCCcEEEecCCCCCHHHHHHHHh
Confidence 55 56765556777888887766543
No 253
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=36.23 E-value=39 Score=33.42 Aligned_cols=37 Identities=22% Similarity=0.099 Sum_probs=32.0
Q ss_pred HHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 13 MVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 13 ~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
.+.-.+.+ ||++.++|..+|+.++|++-.||-.....
T Consensus 233 a~~i~~~~-~~~~~~~a~~~l~~~~~~vk~Ai~~~~~~ 269 (291)
T TIGR00274 233 AVRIVRQA-TDCNKELAEQTLLAADQNVKLAIVMILST 269 (291)
T ss_pred HHHHHHHH-hCcCHHHHHHHHHHhCCCcHHHHHHHHhC
Confidence 44557788 99999999999999999999999987653
No 254
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=35.58 E-value=1.1e+02 Score=30.66 Aligned_cols=66 Identities=9% Similarity=0.074 Sum_probs=49.8
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcC-CCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCceE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLE-GSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMI 439 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~-~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v 439 (444)
+|-||.=.|.+.+-++..+++|..|..=|..... +|+...=.|+.+ +|. | ..++|+.+.++....+
T Consensus 2 ~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~--Gki--L--~D~~tv~Eykv~E~~f 68 (340)
T KOG0011|consen 2 KLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYS--GKI--L--KDETTVGEYKVKEKKF 68 (340)
T ss_pred eeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeec--cee--c--cCCcchhhhccccCce
Confidence 5788999999999999999999999999988521 244444455554 443 4 5689999999994443
No 255
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=35.28 E-value=1.3e+02 Score=26.38 Aligned_cols=67 Identities=7% Similarity=-0.137 Sum_probs=36.9
Q ss_pred cCCeEEEEEeC-CCchhhHHH-HhhccCChhHHHHHhcCE-EEEEeecCChhHHH-HHHHcCCCCCcEEEEEeC
Q 013379 179 QDKWLLVNLQS-TKEFSSHML-NRDTWANEAVSQTISTNF-IFWQVYDDTSEGKK-VCTYYKLDSIPVVLVVDP 248 (444)
Q Consensus 179 ~~K~LlVyl~~-~~~~~~~~f-~rdv~~~~~V~~~l~~~f-V~w~~~~~s~eg~~-~~~~y~~~~~P~l~ii~p 248 (444)
.+||++|+.+- ..++.|..= ... -++...+|-+.++ .+++++.++.+..+ ++..+++. .|+-++-|+
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~--~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~-~~f~lLsD~ 98 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPG--YVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAK-DKIRFLADG 98 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHH--HHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCC-CcEEEEECC
Confidence 45677776664 445555431 111 1223344445567 58888888877755 77777662 233355554
No 256
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=34.28 E-value=2e+02 Score=21.53 Aligned_cols=51 Identities=4% Similarity=-0.027 Sum_probs=31.4
Q ss_pred EEeCCCchhhHHHHhhccCChhHHHHHh---cCEEEEEeecCCh-hH--HHHHHHcCCCCCcEEEEEe
Q 013379 186 NLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTS-EG--KKVCTYYKLDSIPVVLVVD 247 (444)
Q Consensus 186 yl~~~~~~~~~~f~rdv~~~~~V~~~l~---~~fV~w~~~~~s~-eg--~~~~~~y~~~~~P~l~ii~ 247 (444)
-.+.++|+.|... +.+|+ ..|.++-++.+.. +. ..+.+.++..++|.+ +++
T Consensus 4 ~y~~~~Cp~C~~~----------~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v-~~~ 60 (82)
T cd03419 4 VFSKSYCPYCKRA----------KSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNV-FIG 60 (82)
T ss_pred EEEcCCCHHHHHH----------HHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE-EEC
Confidence 3445779888765 33333 3566776666543 22 235567788899998 444
No 257
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=34.22 E-value=1.2e+02 Score=30.90 Aligned_cols=96 Identities=13% Similarity=0.167 Sum_probs=62.1
Q ss_pred HHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCee
Q 013379 176 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 253 (444)
Q Consensus 176 A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~ 253 (444)
.+......||-+..++|..|+.+- -.| ..+...+. .+.-++.++.+ -...+++.+.+..||.+.+..+. ++.
T Consensus 158 ~~~~~~~~lv~f~aPwc~~ck~l~-~~~--~~~a~~~~~~~~v~~~~~d~~--~~~~~~~~~~v~~~Pt~~~f~~~-~~~ 231 (383)
T KOG0191|consen 158 VKDSDADWLVEFYAPWCGHCKKLA-PEW--EKLAKLLKSKENVELGKIDAT--VHKSLASRLEVRGYPTLKLFPPG-EED 231 (383)
T ss_pred hhccCcceEEEEeccccHHhhhcC-hHH--HHHHHHhccCcceEEEeeccc--hHHHHhhhhcccCCceEEEecCC-Ccc
Confidence 445566677778999999888872 111 13333343 45555544444 45678889999999999777653 232
Q ss_pred eEEEeCCCChHHHHHHHHhhhhcC
Q 013379 254 MRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 254 v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
...-.|.-+.+.++..+.......
T Consensus 232 ~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 232 IYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred cccccccccHHHHHHHHHhhcCCC
Confidence 444556678888888777766553
No 258
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=33.55 E-value=2.1e+02 Score=26.65 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=30.0
Q ss_pred CCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 237 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 237 ~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
+.+-..+.+|++ .|..+..+.+...+++++..|...+.
T Consensus 168 ~~Hs~~~~lid~-~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 168 IDHSAGFYLIDA-DGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred eeeeeEEEEECC-CCeEEEEecCCCChHHHHHHHHHHhh
Confidence 344567888997 69988888876679999999988765
No 259
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=32.66 E-value=46 Score=33.02 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=31.9
Q ss_pred HHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 13 MVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 13 ~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
.+.-.+.+ ||++.+.|...|+.++|++-.||-.....
T Consensus 234 a~~i~~~~-~~~~~~~a~~~l~~~~~~vk~ai~~~~~~ 270 (296)
T PRK12570 234 AVRIVMQA-TGCSEDEAKELLKESDNDVKLAILMILTG 270 (296)
T ss_pred HHHHHHHH-HCcCHHHHHHHHHHhCCccHHHHHHHHhC
Confidence 44557788 99999999999999999999999987653
No 260
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=31.93 E-value=1.9e+02 Score=20.52 Aligned_cols=50 Identities=8% Similarity=0.076 Sum_probs=30.6
Q ss_pred EEeCCCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013379 186 NLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (444)
Q Consensus 186 yl~~~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~i 245 (444)
....++|..|... +++|++ .|-.+-++.+......+...++..++|.|.|
T Consensus 3 vy~~~~C~~C~~~----------~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 3 VYTKPGCPYCKKA----------KEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEESTTSHHHHHH----------HHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred EEEcCCCcCHHHH----------HHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 3445678888764 556654 3666543433333344555569999999986
No 261
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=31.57 E-value=2e+02 Score=21.60 Aligned_cols=57 Identities=7% Similarity=0.058 Sum_probs=32.4
Q ss_pred EEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCCh--hHH-HHHHHcCCCCCcEEEEEe
Q 013379 185 VNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS--EGK-KVCTYYKLDSIPVVLVVD 247 (444)
Q Consensus 185 Vyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~--eg~-~~~~~y~~~~~P~l~ii~ 247 (444)
+....++|..|.... .+|..-. ++..|.++.++.+.. +.. .+.+.++..++|.+. ++
T Consensus 2 ~~f~~~~Cp~C~~~~-~~L~~~~----i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~-i~ 61 (84)
T TIGR02180 2 VVFSKSYCPYCKKAK-EILAKLN----VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF-IN 61 (84)
T ss_pred EEEECCCChhHHHHH-HHHHHcC----CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE-EC
Confidence 345567899998763 2222211 122377776665432 222 366778888999984 44
No 262
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=30.56 E-value=1.4e+02 Score=31.50 Aligned_cols=69 Identities=20% Similarity=0.294 Sum_probs=51.2
Q ss_pred CceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEE
Q 013379 365 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 441 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v 441 (444)
..++|.||.|++ +..-.-..+.+|+.+-+-|.... +.+...-.|+.. +|. | +.+.||...|+. .-+|-+
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f-~a~~dqlvLIfa--GrI--L--KD~dTL~~~gI~Dg~TvHL 83 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRF-GAPPDQLVLIYA--GRI--L--KDDDTLKQYGIQDGHTVHL 83 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhc-CCChhHeeeeec--Ccc--c--cChhhHHHcCCCCCcEEEE
Confidence 469999999999 56777778889999888887654 445556666654 664 5 467899999998 456633
No 263
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=30.53 E-value=1.1e+02 Score=28.64 Aligned_cols=46 Identities=13% Similarity=0.249 Sum_probs=34.9
Q ss_pred hHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeC--CCChHHHHHHHHhhh
Q 013379 227 EGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCG--MVQPESLLEDLVPFM 274 (444)
Q Consensus 227 eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G--~~~~~~~l~~L~~~l 274 (444)
+++.+++.+++..||++++.. +|+.--.-.| +-+++.++..|.+.+
T Consensus 162 ~~r~l~~rlg~~GfPTl~le~--ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 162 DSRRLMQRLGAAGFPTLALER--NGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHHHhccCCCCeeeeee--CCceEeccCCcccCCcHHHHHHHHHHH
Confidence 357889999999999999998 5653222346 458899999988764
No 264
>PF03413 PepSY: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR005075 This signature, PepSY, is found in the propeptide of members of the MEROPS peptidase family M4 (clan MA(E)), which contains the thermostable thermolysins (3.4.24.27 from EC), and related thermolabile neutral proteases (bacillolysins) (3.4.24.28 from EC) from various species of Bacillus. It is also in many non-peptidase proteins, including Bacillus subtilis YpeB protein - a regulator of SleB spore cortex lytic enzyme - and a large number of eubacterial and archaeal cell wall-associated and secreted proteins which are mostly annotated as 'hypothetical protein'. Many extracellular bacterial proteases are produced as proenzymes. The propeptides usually have a dual function, i.e. they function as an intramolecular chaperone required for the folding of the polypeptide and as an inhibitor preventing premature activation of the enzyme. Analysis of the propeptide region of the M4 family of peptidases reveals two regions of conservation, the PepSY domain and a second domain, proximate to the N terminus, the FTP domain (IPR011096 from INTERPRO), which is also found in isolation in the propeptide of eukaryotic peptidases belong to MEROPS peptidase family M36. Propeptide domain swapping experiments, for example swapping the propeptide domain of PA protease with that of vibrolysin, both propeptides contain the FTP and PepSY domains, allows the PA protease domain to fold correctly and inhibits the C-terminal autoprocessing activity. However, swapping the propeptide of PA protease for the thermolysin propeptide, does not facilitate the correct folding nor the processing of the chimaeric protein into an active peptidase []. Mutational analysis of the Pseudomonas aeruginosa elastase gene revealed two mutations in the propeptide which resulted in the loss of inhibitory activity but not chaperone activity: A-15V and T-153I (where +1 is defined as the first residue of the mature peptidase). Both mutations resulted in peptidase activity, the T-153V mutation being much less effective than the A-15I mutation [] in activating peptidase activity. The T-153V mutation lies N-terminal to the FTP domain while the A-15I mutation is C-terminal to the PepSY domain. Given the diverse range of other proteins, both domains occur in in isolation, the exact function of each is still unclear; though it has been proposed that the PepSY domain primarily has inhibitory activity and in conjunction with the FTP domain in chaperone activity. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 2GU3_A 3NQZ_A 3NQY_A 2KGY_A.
Probab=30.37 E-value=2e+02 Score=20.37 Aligned_cols=60 Identities=25% Similarity=0.235 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHc--CCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013379 168 SFEKAKDAASVQ--DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (444)
Q Consensus 168 s~~~A~~~A~~~--~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~i 245 (444)
|.++|++.|++. ++.+.+++.... +.-.+|.+.+.+. -....--+-+.
T Consensus 3 s~~~A~~~A~~~~~~~~~~~~~~~~~----------------------~~~~~Y~v~~~~~--------~~~~~~~~~v~ 52 (64)
T PF03413_consen 3 SEEQAVEIALKQYPGKVISVELEEDE----------------------NGRLVYEVEVVSD--------DDPDGGEYEVY 52 (64)
T ss_dssp -HHHHHHHHHCCCCCEEEEEEEECC-----------------------TCEEEEEEEEEBT--------TSTTTEEEEEE
T ss_pred CHHHHHHHHHHHCCCCEEEEEEcccc----------------------CCcEEEEEEEEEE--------ecCCCCEEEEE
Confidence 678999999887 344444433321 3556677666440 00112225667
Q ss_pred EeCCCCeeeEEE
Q 013379 246 VDPITGQKMRSW 257 (444)
Q Consensus 246 i~p~tg~~v~~~ 257 (444)
||+.||+++..+
T Consensus 53 VDa~tG~Il~~~ 64 (64)
T PF03413_consen 53 VDAYTGEILSSY 64 (64)
T ss_dssp EETTT--EEEEE
T ss_pred EECCCCeEEEeC
Confidence 999999998764
No 265
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=30.30 E-value=58 Score=35.70 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=36.4
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (444)
++.|...+++ |-+...|+.-|.+.|.|+|.||+=+|+..+
T Consensus 636 e~~v~si~sm--Gf~~~qa~~aL~~~n~nveravDWif~h~d 675 (763)
T KOG0944|consen 636 EESVASIVSM--GFSRNQAIKALKATNNNVERAVDWIFSHMD 675 (763)
T ss_pred hhHheeeeee--cCcHHHHHHHHHhcCccHHHHHHHHHhccc
Confidence 4577788888 999999999999999999999999999876
No 266
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=28.37 E-value=4.1e+02 Score=28.29 Aligned_cols=85 Identities=13% Similarity=0.093 Sum_probs=53.1
Q ss_pred HHHcCCeE-EEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeee
Q 013379 176 ASVQDKWL-LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 254 (444)
Q Consensus 176 A~~~~K~L-lVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v 254 (444)
.++-.|++ +.-+.++.|+.|....+-. .-....+.+..+. .++..+-..++..|++.+.|+++| + |+.
T Consensus 111 i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~----~~~a~~~~~i~~~--~id~~~~~~~~~~~~v~~VP~~~i-~---~~~- 179 (517)
T PRK15317 111 IKALDGDFHFETYVSLSCHNCPDVVQAL----NLMAVLNPNITHT--MIDGALFQDEVEARNIMAVPTVFL-N---GEE- 179 (517)
T ss_pred HHhcCCCeEEEEEEcCCCCCcHHHHHHH----HHHHHhCCCceEE--EEEchhCHhHHHhcCCcccCEEEE-C---CcE-
Confidence 34444555 3355566788887542211 1111233444433 446677788999999999999975 3 444
Q ss_pred EEEeCCCChHHHHHHHHh
Q 013379 255 RSWCGMVQPESLLEDLVP 272 (444)
Q Consensus 255 ~~~~G~~~~~~~l~~L~~ 272 (444)
.+.|..+.++|+..|..
T Consensus 180 -~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 180 -FGQGRMTLEEILAKLDT 196 (517)
T ss_pred -EEecCCCHHHHHHHHhc
Confidence 36688888888888764
No 267
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=28.25 E-value=2.8e+02 Score=21.33 Aligned_cols=79 Identities=15% Similarity=0.030 Sum_probs=47.4
Q ss_pred EEEEeCCCchhhHHHHhhccCChhHHHHH-hcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCC
Q 013379 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ 262 (444)
Q Consensus 184 lVyl~~~~~~~~~~f~rdv~~~~~V~~~l-~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~ 262 (444)
|+.++.++|.-|.... +.+..+. ...|-+-.+|+++.+. +...|+. ..|.+.+-++++........+.++
T Consensus 2 l~l~~k~~C~LC~~a~------~~L~~~~~~~~~~l~~vDI~~d~~--l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d 72 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAK------EILEEVAAEFPFELEEVDIDEDPE--LFEKYGY-RIPVLHIDGIRQFKEQEELKWRFD 72 (81)
T ss_dssp EEEEE-SSSHHHHHHH------HHHHHCCTTSTCEEEEEETTTTHH--HHHHSCT-STSEEEETT-GGGCTSEEEESSB-
T ss_pred EEEEcCCCCChHHHHH------HHHHHHHhhcCceEEEEECCCCHH--HHHHhcC-CCCEEEEcCcccccccceeCCCCC
Confidence 3556667787777652 1222221 3457788788885443 6778885 799988877532222344567788
Q ss_pred hHHHHHHHH
Q 013379 263 PESLLEDLV 271 (444)
Q Consensus 263 ~~~~l~~L~ 271 (444)
.+.+.+.|.
T Consensus 73 ~~~L~~~L~ 81 (81)
T PF05768_consen 73 EEQLRAWLE 81 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 888877663
No 268
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=27.70 E-value=2.8e+02 Score=21.72 Aligned_cols=56 Identities=16% Similarity=0.273 Sum_probs=32.3
Q ss_pred CCeEEEEEeC----CCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCChhHH-HHHHHcCCCCCcEEEEEe
Q 013379 180 DKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGK-KVCTYYKLDSIPVVLVVD 247 (444)
Q Consensus 180 ~K~LlVyl~~----~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s~eg~-~~~~~y~~~~~P~l~ii~ 247 (444)
.++++|+..+ +.|..|.. ++++|++ .|...-+..+ ++.. .+....+..++|.| +|+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~----------ak~~L~~~~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~v-fi~ 70 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRK----------VVQILNQLGVDFGTFDILED-EEVRQGLKEYSNWPTFPQL-YVN 70 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHH----------HHHHHHHcCCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEE-EEC
Confidence 3567788775 46766654 4556654 3444433322 3333 34555677899998 455
No 269
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=27.38 E-value=3e+02 Score=24.96 Aligned_cols=71 Identities=8% Similarity=0.088 Sum_probs=43.5
Q ss_pred hhhHHHHhhccCChhHHHHHh----cCEE---EEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHH
Q 013379 193 FSSHMLNRDTWANEAVSQTIS----TNFI---FWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPES 265 (444)
Q Consensus 193 ~~~~~f~rdv~~~~~V~~~l~----~~fV---~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~ 265 (444)
..+...-+.+||...-.+.+. .... .=.|.....+-..++..+++...|+++ +. +|.+ +.|..++++
T Consensus 119 ~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~--~G~~---~~G~~~~~~ 192 (197)
T cd03020 119 PDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-LA--DGRV---VPGAPPAAQ 192 (197)
T ss_pred ccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccCchHHHHHHHHHHcCCCcccEEE-EC--CCeE---ecCCCCHHH
Confidence 345556678898876444443 2221 112223334456788899999999997 32 3654 578888877
Q ss_pred HHHH
Q 013379 266 LLED 269 (444)
Q Consensus 266 ~l~~ 269 (444)
|...
T Consensus 193 l~~~ 196 (197)
T cd03020 193 LEAL 196 (197)
T ss_pred HHhh
Confidence 7654
No 270
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=26.41 E-value=1.1e+02 Score=28.46 Aligned_cols=84 Identities=13% Similarity=0.229 Sum_probs=54.2
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEe
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~ 247 (444)
+=.+++...++..|.+ +.++-+.-+-|+.+++.+ .---..++...||=. + -.-+--+++.+++..+|+|+++.
T Consensus 73 ~Ekdf~~~~~kS~kVV-cHFY~~~f~RCKimDkhL--e~LAk~h~eTrFikv--n--ae~~PFlv~kL~IkVLP~v~l~k 145 (211)
T KOG1672|consen 73 SEKDFFEEVKKSEKVV-CHFYRPEFFRCKIMDKHL--EILAKRHVETRFIKV--N--AEKAPFLVTKLNIKVLPTVALFK 145 (211)
T ss_pred cHHHHHHHhhcCceEE-EEEEcCCCcceehHHHHH--HHHHHhcccceEEEE--e--cccCceeeeeeeeeEeeeEEEEE
Confidence 3456667777776644 555556678999986432 000112333445433 3 34456678899999999999997
Q ss_pred CCCCeeeEEEeCC
Q 013379 248 PITGQKMRSWCGM 260 (444)
Q Consensus 248 p~tg~~v~~~~G~ 260 (444)
+|..+..+.|+
T Consensus 146 --~g~~~D~iVGF 156 (211)
T KOG1672|consen 146 --NGKTVDYVVGF 156 (211)
T ss_pred --cCEEEEEEeeH
Confidence 68888788885
No 271
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.96 E-value=1.1e+02 Score=31.65 Aligned_cols=44 Identities=18% Similarity=0.382 Sum_probs=38.4
Q ss_pred CCcchHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 5 LSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 5 l~~~~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
++..+.+..|.+.|++ |-+.+....-|.++=+|-|+||+-.+.+
T Consensus 151 ~~g~~~e~~I~~i~eM--Gf~R~qV~~ALRAafNNPdRAVEYL~tG 194 (378)
T TIGR00601 151 VVGSERETTIEEIMEM--GYEREEVERALRAAFNNPDRAVEYLLTG 194 (378)
T ss_pred ccchHHHHHHHHHHHh--CCCHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence 3445667799999999 8999999999999999999999977764
No 272
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=25.49 E-value=1.7e+02 Score=21.79 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=49.6
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCceEE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMIS 440 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v~ 440 (444)
.|.+++-.|+.+.-..-.+|+|..+-+-|+.+ .|.++..-+|+.. ++. ...++|-++.++..++|+
T Consensus 2 ~iKvktLt~KeIeidIep~DkverIKErvEEk-eGIPp~qqrli~~--gkq----m~DD~tA~~Y~~~~GSVl 67 (70)
T KOG0005|consen 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEK-EGIPPQQQRLIYA--GKQ----MNDDKTAAHYNLLGGSVL 67 (70)
T ss_pred eeeEeeeccceEEEeeCcchHHHHHHHHhhhh-cCCCchhhhhhhc--ccc----ccccccHHHhhhccceeE
Confidence 47788889999999999999999999999886 4555444445432 442 245789999998877765
No 273
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=24.42 E-value=2.3e+02 Score=21.80 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=34.6
Q ss_pred EEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcC
Q 013379 369 VGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA 413 (444)
Q Consensus 369 i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~ 413 (444)
+.+-||||++..-.-....||.++.+=+-.. .+.....+.|...
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~k-r~l~~~~~~v~~~ 45 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKK-RGLNPECCDVFLL 45 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHH-cCCCHHHEEEEEe
Confidence 5677999999999999999999999986554 4666666666554
No 274
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=24.29 E-value=3.8e+02 Score=21.59 Aligned_cols=89 Identities=11% Similarity=0.048 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeC
Q 013379 169 FEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDP 248 (444)
Q Consensus 169 ~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p 248 (444)
.+++-..-......++-|+.+.....-..| ..+.+.+++.|.|+... +..++..|++ .|.+.|+.|
T Consensus 8 ~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F-------~~vA~~~R~d~~F~~~~-----~~~~~~~~~~--~~~ivl~~p 73 (104)
T cd03069 8 EAEFEKFLSDDDASVVGFFEDEDSKLLSEF-------LKAADTLRESFRFAHTS-----DKQLLEKYGY--GEGVVLFRP 73 (104)
T ss_pred HHHHHHHhccCCcEEEEEEcCCCchHHHHH-------HHHHHhhhhcCEEEEEC-----hHHHHHhcCC--CCceEEEec
Confidence 333333333444555557777655445555 36788888889886422 2345667777 688888866
Q ss_pred C----CC-eeeEEEeCCCChHHHHHHHH
Q 013379 249 I----TG-QKMRSWCGMVQPESLLEDLV 271 (444)
Q Consensus 249 ~----tg-~~v~~~~G~~~~~~~l~~L~ 271 (444)
. .- +......|..+.+.+...|.
T Consensus 74 ~~~~~k~de~~~~y~g~~~~~~l~~fi~ 101 (104)
T cd03069 74 PRLSNKFEDSSVKFDGDLDSSKIKKFIR 101 (104)
T ss_pred hhhhcccCcccccccCcCCHHHHHHHHH
Confidence 2 11 11123567666555555443
No 275
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=24.12 E-value=1.7e+02 Score=22.88 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=29.6
Q ss_pred EECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEE
Q 013379 371 VRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRL 410 (444)
Q Consensus 371 iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L 410 (444)
|-||||.+..-......++.++.+-+-. ..++++..+-|
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk-~~~ldp~eh~L 42 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACK-RKQLDPMEHYL 42 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHH-hcCCChhHhee
Confidence 5689999999999999999999997443 34555544433
No 276
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=24.08 E-value=2.2e+02 Score=28.00 Aligned_cols=103 Identities=15% Similarity=0.134 Sum_probs=60.7
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~i 245 (444)
..|.+.+...++...-+.+-+.++-|..+.. .-+.+.++.++ .+++.-+..+|....++.+..+-..-|.+.|
T Consensus 168 ~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~------RQ~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~I 241 (281)
T PF02401_consen 168 EKFEEIVEALKKRFPELEGPVFNTICYATQN------RQEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYHI 241 (281)
T ss_dssp HHHHHHHHHHHHHSTCEE-SCC-S--CHHHH------HHHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHHHhCccccCCCCCCCCHhHHH------HHHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHhCCCEEEe
Confidence 4555666666666665554344444433322 22467777664 6788878999999888766554444466666
Q ss_pred EeCC--------CCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 246 VDPI--------TGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 246 i~p~--------tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
=++. ....+....|..+|+.+++.+...|.
T Consensus 242 e~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l~ 279 (281)
T PF02401_consen 242 ETADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRLE 279 (281)
T ss_dssp SSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHHH
T ss_pred CCccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHHh
Confidence 4332 12467888899999999999888775
No 277
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=23.11 E-value=84 Score=33.93 Aligned_cols=101 Identities=15% Similarity=0.150 Sum_probs=71.4
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-----C-EEEEEeecCChhHHHHHHHcCCCC
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-----N-FIFWQVYDDTSEGKKVCTYYKLDS 239 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-----~-fV~w~~~~~s~eg~~~~~~y~~~~ 239 (444)
..+|..|+..++ |--||-+.+++|-.|..|. |.++.+-+. . ..+..+|--..+-..+|+.++|..
T Consensus 46 ~~tf~~~v~~~~---~~~lVEFy~swCGhCr~FA------Ptfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 46 VDTFNAAVFGSR---KAKLVEFYNSWCGHCRAFA------PTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred hhhhHHHhcccc---hhHHHHHHHhhhhhhhhcc------hHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 558888887666 4557888899999999984 555555442 2 455666777788889999999999
Q ss_pred CcEEEEEeCCCCe--eeEEEeCCCChHHHHHHHHhhhh
Q 013379 240 IPVVLVVDPITGQ--KMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 240 ~P~l~ii~p~tg~--~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
||.|-..-|..-. .=..+.|...+.++...|...+.
T Consensus 117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la 154 (606)
T KOG1731|consen 117 YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA 154 (606)
T ss_pred CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence 9999988875211 11235566667777777766664
No 278
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=22.61 E-value=3.9e+02 Score=21.09 Aligned_cols=61 Identities=15% Similarity=0.215 Sum_probs=38.8
Q ss_pred ccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHH
Q 013379 202 TWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLL 267 (444)
Q Consensus 202 v~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l 267 (444)
++.+..+.+++...++....+..-.++..+...++....+.+.+++. .|+.+ |.++..+++
T Consensus 57 ~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~----Gvvs~~di~ 117 (119)
T cd04598 57 LYGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYL----GIGTVKDLL 117 (119)
T ss_pred HHcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEE----EEEEHHHHh
Confidence 34556788898888888765555567777777676655555556664 46554 444555544
No 279
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=22.27 E-value=6.4e+02 Score=26.82 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=53.0
Q ss_pred HHHHHcCCeE-EEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCe
Q 013379 174 DAASVQDKWL-LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 252 (444)
Q Consensus 174 ~~A~~~~K~L-lVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~ 252 (444)
+..++-.+++ +--+.++.|+.|....+ .+ .-....+.+.... .++..+-..++..|++.+.|++.| +|+
T Consensus 110 ~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~-~~---~~~a~~~p~i~~~--~id~~~~~~~~~~~~v~~VP~~~i----~~~ 179 (515)
T TIGR03140 110 DRIRRLNGPLHFETYVSLTCQNCPDVVQ-AL---NQMALLNPNISHT--MIDGALFQDEVEALGIQGVPAVFL----NGE 179 (515)
T ss_pred HHHHhcCCCeEEEEEEeCCCCCCHHHHH-HH---HHHHHhCCCceEE--EEEchhCHHHHHhcCCcccCEEEE----CCc
Confidence 3334434454 33444556888764321 11 1112223333333 466777788999999999999975 344
Q ss_pred eeEEEeCCCChHHHHHHHHhh
Q 013379 253 KMRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 253 ~v~~~~G~~~~~~~l~~L~~~ 273 (444)
. .+.|..+.++|+..|...
T Consensus 180 ~--~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 180 E--FHNGRMDLAELLEKLEET 198 (515)
T ss_pred E--EEecCCCHHHHHHHHhhc
Confidence 3 367888888998887655
No 280
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=21.92 E-value=3.4e+02 Score=24.50 Aligned_cols=46 Identities=20% Similarity=0.086 Sum_probs=34.2
Q ss_pred EEEEECCCC----ceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcC
Q 013379 368 RVGVRLPDG----RRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA 413 (444)
Q Consensus 368 ~i~iRlP~G----~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~ 413 (444)
.|-|+.++| ..+......+.+|.+|+..+...++......+.|.+.
T Consensus 2 ~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~ 51 (162)
T PF13019_consen 2 NVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTN 51 (162)
T ss_pred eEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEe
Confidence 577888999 5788888899999999999998754433333555554
No 281
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=21.07 E-value=4.5e+02 Score=21.25 Aligned_cols=98 Identities=15% Similarity=0.112 Sum_probs=49.5
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCc----hhhHHHHh-----------hccCChhHHHHHhcCEEEEEeec---CChh
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKE----FSSHMLNR-----------DTWANEAVSQTISTNFIFWQVYD---DTSE 227 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~----~~~~~f~r-----------dv~~~~~V~~~l~~~fV~w~~~~---~s~e 227 (444)
..+..+|+..-.+.+.+.++.+.+... ....-+.+ ..|.+..+.++++.+++....+. ....
T Consensus 9 ~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~ 88 (126)
T cd04640 9 DTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDLEELENAS 88 (126)
T ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccHHHhccCc
Confidence 347788887776555444444443322 11111111 23445568888887765442221 1222
Q ss_pred HHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHH
Q 013379 228 GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLL 267 (444)
Q Consensus 228 g~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l 267 (444)
...+...+.-...+++.|++...|.++ |.++..+++
T Consensus 89 l~~~l~~m~~~~~~~lpVvd~~~~~~~----G~it~~di~ 124 (126)
T cd04640 89 VGDVVETLKASGRQHALVVDREHHQIR----GIISTSDIA 124 (126)
T ss_pred HHHHHHHHHHCCCceEEEEECCCCEEE----EEEeHHHHh
Confidence 233444444456788888884314443 555555544
No 282
>PTZ00381 aldehyde dehydrogenase family protein; Provisional
Probab=20.02 E-value=97 Score=33.04 Aligned_cols=39 Identities=8% Similarity=0.165 Sum_probs=35.8
Q ss_pred HhhcCCCccCcccCcHHHHHHHHHHcCCeEEEEEeCCCc
Q 013379 154 ASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKE 192 (444)
Q Consensus 154 ~~~f~pp~~~~~~gs~~~A~~~A~~~~K~LlVyl~~~~~ 192 (444)
++.|+|-.+++--.++++|++.+....+.|-.||.+.+.
T Consensus 340 eEiFGPVl~v~~~~~~deAi~~~n~~~~gLa~~vft~d~ 378 (493)
T PTZ00381 340 EEIFGPILPILTYENIDEVLEFINSRPKPLALYYFGEDK 378 (493)
T ss_pred ccccCCeEEEEeeCCHHHHHHHHhcCCCCceEEEECCCH
Confidence 589999999988899999999999999999999999754
Done!