Query 013379
Match_columns 444
No_of_seqs 319 out of 1271
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 09:29:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ec4_A FAS-associated factor 1 100.0 2.4E-28 8.3E-33 222.2 13.9 129 150-278 21-171 (178)
2 2dlx_A UBX domain-containing p 99.9 2.6E-26 8.9E-31 204.0 13.8 132 146-278 8-139 (153)
3 2cr5_A Reproduction 8; UBX dom 99.9 3.3E-21 1.1E-25 161.2 12.2 87 351-441 8-94 (109)
4 2dzk_A UBX domain-containing p 99.8 3.5E-18 1.2E-22 142.7 11.6 84 359-444 6-90 (109)
5 3qx1_A FAS-associated factor 1 99.8 3.8E-18 1.3E-22 135.9 10.3 76 364-442 5-81 (84)
6 1s3s_G P47 protein; AAA ATPase 99.7 2E-18 6.9E-23 148.0 8.8 78 364-444 50-127 (127)
7 1wj4_A KIAA0794 protein; UBX d 99.7 3.6E-17 1.2E-21 139.4 10.3 81 359-443 36-118 (124)
8 2dal_A Protein KIAA0794; FAS a 99.2 1.1E-11 3.7E-16 92.3 5.6 49 3-53 9-57 (62)
9 1v92_A NSFL1 cofactor P47; 3-h 99.2 8.7E-12 3E-16 87.3 4.6 41 10-51 5-45 (46)
10 3e21_A HFAF1, FAS-associated f 99.2 3.6E-12 1.2E-16 87.8 2.1 41 8-49 3-44 (45)
11 2dam_A ETEA protein; KIAA0887, 99.2 1.7E-11 5.7E-16 92.6 5.7 49 3-53 12-61 (67)
12 3f9u_A Putative exported cytoc 99.2 1.2E-10 4.1E-15 104.0 11.2 113 164-277 31-168 (172)
13 2kuc_A Putative disulphide-iso 99.2 4.6E-10 1.6E-14 95.0 13.6 111 165-276 12-122 (130)
14 2ju5_A Thioredoxin disulfide i 99.1 2E-09 6.7E-14 94.7 14.7 107 167-275 34-152 (154)
15 3ph9_A Anterior gradient prote 99.1 3.2E-10 1.1E-14 99.9 9.3 111 163-277 27-147 (151)
16 2dzl_A Protein FAM100B; UBA-li 99.0 2.1E-10 7E-15 86.2 5.5 40 12-52 19-58 (66)
17 2lst_A Thioredoxin; structural 98.6 2.6E-11 8.8E-16 102.9 0.0 109 170-278 9-119 (130)
18 3ira_A Conserved protein; meth 99.0 2E-09 6.8E-14 97.0 10.8 110 165-277 24-146 (173)
19 3fk8_A Disulphide isomerase; A 98.9 1.1E-08 3.9E-13 86.8 11.5 105 167-273 16-131 (133)
20 2fwh_A Thiol:disulfide interch 98.8 2.5E-08 8.5E-13 85.2 11.8 106 166-275 19-128 (134)
21 1ep7_A Thioredoxin CH1, H-type 98.5 1.2E-06 4.1E-11 71.4 12.2 100 167-274 11-110 (112)
22 2l57_A Uncharacterized protein 98.5 9.6E-07 3.3E-11 74.0 11.2 98 176-277 22-119 (126)
23 1xfl_A Thioredoxin H1; AT3G510 98.4 2.5E-06 8.4E-11 71.7 12.7 98 166-274 24-123 (124)
24 3tco_A Thioredoxin (TRXA-1); d 98.4 2.1E-06 7E-11 69.3 11.3 98 166-274 11-108 (109)
25 2voc_A Thioredoxin; electron t 98.4 3.4E-06 1.2E-10 69.1 12.7 101 165-277 7-107 (112)
26 2vm1_A Thioredoxin, thioredoxi 98.4 3.6E-06 1.2E-10 69.1 12.1 99 166-275 14-114 (118)
27 3qfa_C Thioredoxin; protein-pr 98.4 3E-06 1E-10 70.2 11.6 100 161-273 14-115 (116)
28 2yzu_A Thioredoxin; redox prot 98.4 5.3E-06 1.8E-10 66.7 12.4 98 167-275 9-106 (109)
29 3gnj_A Thioredoxin domain prot 98.4 6.9E-06 2.4E-10 66.6 13.0 91 178-275 20-110 (111)
30 2vlu_A Thioredoxin, thioredoxi 98.4 5E-06 1.7E-10 68.9 12.3 105 162-275 16-120 (122)
31 3die_A Thioredoxin, TRX; elect 98.3 3.8E-06 1.3E-10 67.4 11.2 97 165-273 9-105 (106)
32 1w4v_A Thioredoxin, mitochondr 98.3 4.7E-06 1.6E-10 69.2 12.0 95 173-274 24-118 (119)
33 1nsw_A Thioredoxin, TRX; therm 98.3 4.3E-06 1.5E-10 67.2 11.3 93 175-274 12-104 (105)
34 2i4a_A Thioredoxin; acidophIle 98.3 6.3E-06 2.2E-10 66.2 12.3 97 167-273 10-106 (107)
35 1thx_A Thioredoxin, thioredoxi 98.3 5E-06 1.7E-10 67.8 11.7 99 167-275 15-113 (115)
36 1ti3_A Thioredoxin H, PTTRXH1; 98.3 3.5E-06 1.2E-10 68.6 10.7 98 166-274 12-111 (113)
37 3d22_A TRXH4, thioredoxin H-ty 98.3 4.8E-06 1.6E-10 70.9 11.9 101 166-277 32-134 (139)
38 3zzx_A Thioredoxin; oxidoreduc 98.3 9.2E-06 3.2E-10 66.5 12.7 92 167-271 9-102 (105)
39 2e0q_A Thioredoxin; electron t 98.3 1E-05 3.5E-10 64.3 12.5 98 166-275 6-103 (104)
40 3dml_A Putative uncharacterize 98.3 1.2E-06 4E-11 73.4 7.0 96 179-277 17-112 (116)
41 1dby_A Chloroplast thioredoxin 98.3 7.9E-06 2.7E-10 65.8 11.9 93 175-274 14-106 (107)
42 2trx_A Thioredoxin; electron t 98.3 8E-06 2.7E-10 65.9 11.9 98 167-274 10-107 (108)
43 2kzr_A Ubiquitin thioesterase 98.3 1E-06 3.4E-11 69.8 6.1 71 368-441 2-74 (86)
44 3p2a_A Thioredoxin 2, putative 98.3 1.3E-05 4.4E-10 69.0 13.3 101 166-277 45-145 (148)
45 2i1u_A Thioredoxin, TRX, MPT46 98.2 4.8E-06 1.6E-10 68.7 9.7 93 175-274 25-117 (121)
46 3bq3_A Defective in cullin ned 98.2 4.3E-07 1.5E-11 86.9 3.6 46 5-52 11-56 (270)
47 3ul3_B Thioredoxin, thioredoxi 98.2 6.1E-06 2.1E-10 69.4 10.3 91 175-272 37-127 (128)
48 1xwb_A Thioredoxin; dimerizati 98.2 2.3E-05 7.8E-10 62.7 13.2 96 168-273 10-105 (106)
49 1t00_A Thioredoxin, TRX; redox 98.2 8.3E-06 2.8E-10 66.4 10.5 92 177-275 20-111 (112)
50 3hxs_A Thioredoxin, TRXP; elec 98.2 1.1E-05 3.6E-10 68.8 11.5 90 179-275 50-139 (141)
51 1fb6_A Thioredoxin M; electron 98.2 9.3E-06 3.2E-10 65.0 10.4 97 167-273 8-104 (105)
52 2o8v_B Thioredoxin 1; disulfid 98.2 6.5E-06 2.2E-10 69.5 9.8 98 167-274 30-127 (128)
53 2dml_A Protein disulfide-isome 98.2 9.7E-06 3.3E-10 67.9 10.8 103 166-277 24-126 (130)
54 3f3q_A Thioredoxin-1; His TAG, 98.2 1.7E-05 5.7E-10 64.7 11.9 89 173-272 17-107 (109)
55 3hz4_A Thioredoxin; NYSGXRC, P 98.2 1.1E-05 3.9E-10 69.0 11.3 102 168-276 12-113 (140)
56 4euy_A Uncharacterized protein 98.2 9.8E-06 3.4E-10 65.5 10.0 87 178-274 16-104 (105)
57 1syr_A Thioredoxin; SGPP, stru 98.2 3E-05 1E-09 63.3 13.0 97 165-274 15-111 (112)
58 2l5l_A Thioredoxin; structural 98.2 9.7E-06 3.3E-10 68.9 10.4 93 179-278 37-129 (136)
59 2ppt_A Thioredoxin-2; thiredox 98.2 1.5E-05 5.2E-10 69.7 11.8 91 178-275 62-152 (155)
60 1r26_A Thioredoxin; redox-acti 98.2 1.6E-05 5.6E-10 66.9 11.5 94 167-275 28-123 (125)
61 3m9j_A Thioredoxin; oxidoreduc 98.2 2.3E-05 7.8E-10 62.7 11.9 95 168-273 10-104 (105)
62 2f51_A Thioredoxin; electron t 98.2 2.1E-05 7.2E-10 65.2 11.8 102 165-273 8-111 (118)
63 1x5d_A Protein disulfide-isome 98.2 1.9E-05 6.4E-10 66.2 11.7 101 167-277 15-119 (133)
64 3d6i_A Monothiol glutaredoxin- 98.1 1.8E-05 6.1E-10 64.4 10.8 97 167-275 9-109 (112)
65 1sen_A Thioredoxin-like protei 98.1 5E-06 1.7E-10 73.5 7.9 113 155-277 24-150 (164)
66 2oe3_A Thioredoxin-3; electron 98.1 3.5E-05 1.2E-09 63.5 12.2 91 170-271 20-112 (114)
67 1gh2_A Thioredoxin-like protei 98.1 3.7E-05 1.3E-09 62.0 12.0 95 167-274 10-106 (107)
68 2j23_A Thioredoxin; immune pro 98.1 2.3E-05 7.9E-10 65.2 10.7 95 168-274 25-120 (121)
69 2dj1_A Protein disulfide-isome 98.1 2.9E-05 1E-09 65.8 11.6 101 165-277 23-126 (140)
70 3uvt_A Thioredoxin domain-cont 98.1 6.7E-05 2.3E-09 60.5 13.1 93 165-272 11-109 (111)
71 2b5x_A YKUV protein, TRXY; thi 98.1 3.7E-05 1.3E-09 65.2 12.0 97 176-276 25-146 (148)
72 2xc2_A Thioredoxinn; oxidoredu 98.1 4.9E-05 1.7E-09 62.5 12.2 94 167-273 22-116 (117)
73 2vim_A Thioredoxin, TRX; thior 98.0 8.9E-05 3E-09 59.0 13.0 93 168-273 9-103 (104)
74 1v98_A Thioredoxin; oxidoreduc 98.0 3.9E-05 1.3E-09 65.3 11.4 98 167-275 41-138 (140)
75 1zma_A Bacterocin transport ac 98.0 4.8E-05 1.7E-09 62.6 11.5 86 176-271 25-117 (118)
76 2f9s_A Thiol-disulfide oxidore 98.0 5E-05 1.7E-09 65.2 12.0 95 179-277 25-140 (151)
77 3dxb_A Thioredoxin N-terminall 98.0 3E-05 1E-09 71.9 10.7 102 166-277 19-120 (222)
78 3apq_A DNAJ homolog subfamily 98.0 6.1E-05 2.1E-09 69.0 12.5 100 167-277 105-204 (210)
79 3aps_A DNAJ homolog subfamily 98.0 3.3E-05 1.1E-09 63.8 9.7 101 170-277 11-115 (122)
80 2wz9_A Glutaredoxin-3; protein 98.0 9.3E-05 3.2E-09 64.2 12.9 97 167-276 21-119 (153)
81 1oaz_A Thioredoxin 1; immune s 98.0 1.2E-05 4E-10 67.5 6.6 98 167-274 11-122 (123)
82 1zzo_A RV1677; thioredoxin fol 98.0 4.7E-05 1.6E-09 63.4 10.3 89 179-275 24-135 (136)
83 3erw_A Sporulation thiol-disul 98.0 3.4E-05 1.2E-09 65.2 9.6 88 179-270 33-144 (145)
84 3raz_A Thioredoxin-related pro 98.0 4.5E-05 1.5E-09 65.6 10.4 93 179-278 23-143 (151)
85 4evm_A Thioredoxin family prot 97.9 6.1E-05 2.1E-09 62.5 10.9 90 179-272 21-136 (138)
86 2lja_A Putative thiol-disulfid 97.9 5.3E-05 1.8E-09 64.9 10.4 96 179-278 29-146 (152)
87 3qou_A Protein YBBN; thioredox 97.9 4.4E-05 1.5E-09 73.2 10.9 101 165-274 13-113 (287)
88 2l6c_A Thioredoxin; oxidoreduc 97.9 8.5E-05 2.9E-09 60.5 11.0 88 178-275 17-106 (110)
89 1lu4_A Soluble secreted antige 97.9 6.1E-05 2.1E-09 62.9 10.3 88 179-274 23-135 (136)
90 3gix_A Thioredoxin-like protei 97.9 7.4E-05 2.5E-09 64.9 10.7 99 168-275 13-121 (149)
91 1faa_A Thioredoxin F; electron 97.8 0.00022 7.7E-09 58.9 12.6 96 166-273 25-122 (124)
92 3emx_A Thioredoxin; structural 97.8 0.00011 3.8E-09 62.3 10.5 88 182-277 33-128 (135)
93 2qsi_A Putative hydrogenase ex 97.8 0.00027 9.1E-09 60.7 12.5 114 147-275 5-123 (137)
94 3or5_A Thiol:disulfide interch 97.8 0.00026 8.9E-09 61.2 12.8 95 179-277 33-153 (165)
95 1mek_A Protein disulfide isome 97.8 3.2E-05 1.1E-09 63.2 6.5 100 165-275 13-117 (120)
96 3kh7_A Thiol:disulfide interch 97.8 0.0001 3.6E-09 65.5 10.3 92 178-276 56-168 (176)
97 3kcm_A Thioredoxin family prot 97.8 0.00025 8.6E-09 60.7 12.3 96 179-278 27-146 (154)
98 3cxg_A Putative thioredoxin; m 97.8 8.5E-05 2.9E-09 63.0 9.2 98 167-275 29-129 (133)
99 1wmj_A Thioredoxin H-type; str 97.8 6.7E-06 2.3E-10 68.7 1.9 100 166-276 22-123 (130)
100 1kng_A Thiol:disulfide interch 97.8 0.00011 3.6E-09 63.1 9.5 90 179-275 41-152 (156)
101 2b1k_A Thiol:disulfide interch 97.8 8.1E-05 2.8E-09 65.1 8.8 90 179-275 50-160 (168)
102 2yj7_A LPBCA thioredoxin; oxid 96.9 4E-06 1.4E-10 67.0 0.0 92 175-273 14-105 (106)
103 1qgv_A Spliceosomal protein U5 97.7 0.00018 6.1E-09 61.9 10.5 90 179-275 22-121 (142)
104 3gl3_A Putative thiol:disulfid 97.7 0.00044 1.5E-08 59.0 13.0 96 178-277 26-144 (152)
105 2pu9_C TRX-F, thioredoxin F-ty 97.7 0.00026 9.1E-09 57.3 10.8 97 166-274 12-110 (111)
106 3fkf_A Thiol-disulfide oxidore 97.7 0.00016 5.6E-09 61.1 9.8 90 179-275 32-146 (148)
107 3lwa_A Secreted thiol-disulfid 97.7 0.00033 1.1E-08 62.1 12.2 93 179-275 58-181 (183)
108 3lor_A Thiol-disulfide isomera 97.7 0.00074 2.5E-08 58.0 14.0 95 175-276 25-156 (160)
109 3ia1_A THIO-disulfide isomeras 97.7 0.00029 1E-08 60.4 11.0 90 181-277 31-146 (154)
110 2l5o_A Putative thioredoxin; s 97.7 0.00022 7.6E-09 60.9 10.2 96 178-277 26-143 (153)
111 2av4_A Thioredoxin-like protei 97.7 0.0002 6.9E-09 62.8 9.8 97 167-275 30-139 (160)
112 3eyt_A Uncharacterized protein 97.7 0.00027 9.2E-09 60.8 10.8 91 179-276 27-153 (158)
113 3hcz_A Possible thiol-disulfid 97.7 8.6E-05 3E-09 62.9 7.2 93 179-275 30-146 (148)
114 3h79_A Thioredoxin-like protei 97.7 0.00043 1.5E-08 57.7 11.4 95 166-272 22-125 (127)
115 2lrn_A Thiol:disulfide interch 97.6 0.00064 2.2E-08 58.3 12.4 91 179-276 28-142 (152)
116 2ggt_A SCO1 protein homolog, m 97.6 0.00063 2.2E-08 58.8 12.0 95 179-277 22-163 (164)
117 2djj_A PDI, protein disulfide- 97.6 0.00016 5.3E-09 59.5 7.6 89 178-275 23-117 (121)
118 3hdc_A Thioredoxin family prot 97.6 0.00048 1.6E-08 59.5 11.1 91 179-273 40-150 (158)
119 2dbc_A PDCL2, unnamed protein 97.6 0.00016 5.4E-09 61.5 7.8 92 167-272 18-118 (135)
120 2dj0_A Thioredoxin-related tra 97.6 0.0002 7E-09 60.6 8.3 91 166-265 14-111 (137)
121 1wj7_A Hypothetical protein (R 97.6 8E-05 2.7E-09 60.1 5.2 42 9-51 38-79 (104)
122 1jfu_A Thiol:disulfide interch 97.6 0.00089 3.1E-08 59.4 12.9 93 179-275 59-180 (186)
123 2h30_A Thioredoxin, peptide me 97.6 0.00028 9.6E-09 61.1 9.3 95 178-275 36-156 (164)
124 1x5e_A Thioredoxin domain cont 97.6 0.00062 2.1E-08 56.4 11.0 97 166-276 14-111 (126)
125 3q6o_A Sulfhydryl oxidase 1; p 97.5 0.00042 1.4E-08 64.8 10.7 116 155-278 6-130 (244)
126 2qgv_A Hydrogenase-1 operon pr 97.5 0.00081 2.8E-08 57.9 11.3 112 147-275 8-125 (140)
127 2lrt_A Uncharacterized protein 97.5 0.00071 2.4E-08 58.3 11.2 90 179-272 34-145 (152)
128 3ed3_A Protein disulfide-isome 97.5 0.00084 2.9E-08 65.1 12.8 102 166-275 24-142 (298)
129 1a8l_A Protein disulfide oxido 97.5 0.0011 3.7E-08 60.8 13.0 93 175-274 128-225 (226)
130 3ewl_A Uncharacterized conserv 97.5 0.00083 2.8E-08 56.6 10.8 91 179-273 26-139 (142)
131 1z96_A DNA-damage, UBA-domain 97.4 0.00016 5.4E-09 48.3 4.6 37 10-48 4-40 (40)
132 3idv_A Protein disulfide-isome 97.4 0.0011 3.7E-08 61.2 11.8 100 165-276 21-123 (241)
133 1oai_A Nuclear RNA export fact 97.4 0.00015 5.1E-09 52.9 4.5 45 4-50 2-46 (59)
134 3ha9_A Uncharacterized thiored 97.4 0.0014 4.7E-08 56.9 11.5 87 179-274 36-163 (165)
135 2dj3_A Protein disulfide-isome 97.4 0.00043 1.5E-08 57.8 7.6 93 179-277 24-120 (133)
136 3t58_A Sulfhydryl oxidase 1; o 97.4 0.0011 3.6E-08 69.5 12.2 118 155-278 6-130 (519)
137 3s9f_A Tryparedoxin; thioredox 97.3 0.0012 4.2E-08 57.8 10.4 78 177-257 45-146 (165)
138 1i5g_A Tryparedoxin II; electr 97.3 0.0015 5.1E-08 55.3 10.6 76 179-257 27-126 (144)
139 2rli_A SCO2 protein homolog, m 97.3 0.0033 1.1E-07 54.6 13.1 95 179-277 25-166 (171)
140 3fw2_A Thiol-disulfide oxidore 97.3 0.0014 4.7E-08 56.0 10.3 87 179-275 32-148 (150)
141 1o8x_A Tryparedoxin, TRYX, TXN 97.3 0.0014 4.9E-08 55.6 10.3 77 178-257 26-126 (146)
142 2es7_A Q8ZP25_salty, putative 97.3 0.00092 3.1E-08 57.6 8.8 113 147-276 8-126 (142)
143 1o73_A Tryparedoxin; electron 97.3 0.0015 5.1E-08 55.1 10.0 77 178-257 26-126 (144)
144 3iv4_A Putative oxidoreductase 97.3 0.0024 8.1E-08 52.7 10.7 87 175-269 19-110 (112)
145 2jp7_A MRNA export factor MEX6 97.2 0.00026 9E-09 51.1 3.8 44 5-50 2-45 (57)
146 1wou_A Thioredoxin -related pr 97.2 0.00098 3.3E-08 55.4 8.0 92 168-270 14-120 (123)
147 3eur_A Uncharacterized protein 97.2 0.0012 4.1E-08 55.8 8.7 80 179-259 30-132 (142)
148 1nho_A Probable thioredoxin; b 97.2 0.00093 3.2E-08 50.9 7.1 81 183-274 4-84 (85)
149 2hyx_A Protein DIPZ; thioredox 97.2 0.002 6.9E-08 64.0 11.3 94 179-276 81-200 (352)
150 2trc_P Phosducin, MEKA, PP33; 97.1 0.00068 2.3E-08 62.8 6.6 84 167-262 108-193 (217)
151 1fo5_A Thioredoxin; disulfide 97.1 0.0013 4.5E-08 50.0 7.0 82 181-273 3-84 (85)
152 2r2j_A Thioredoxin domain-cont 97.1 0.004 1.4E-07 62.2 12.5 99 166-275 12-117 (382)
153 2b5e_A Protein disulfide-isome 97.0 0.0042 1.4E-07 64.3 12.6 100 165-275 20-122 (504)
154 3drn_A Peroxiredoxin, bacterio 97.0 0.0043 1.5E-07 53.7 10.8 92 179-274 27-144 (161)
155 3kp8_A Vkorc1/thioredoxin doma 97.0 0.00075 2.6E-08 55.0 5.4 87 171-271 3-91 (106)
156 1ify_A HHR23A, UV excision rep 97.0 0.001 3.4E-08 46.6 4.8 43 6-50 4-46 (49)
157 3f8u_A Protein disulfide-isome 96.9 0.0019 6.3E-08 66.5 8.8 102 166-275 8-109 (481)
158 3evi_A Phosducin-like protein 96.9 0.0023 7.9E-08 53.3 7.6 82 166-261 10-93 (118)
159 2ywi_A Hypothetical conserved 96.9 0.0029 9.9E-08 56.5 8.8 92 179-277 44-176 (196)
160 2pjh_A Protein NPL4, nuclear p 96.9 0.0008 2.7E-08 52.2 4.4 72 367-441 5-77 (80)
161 3idv_A Protein disulfide-isome 96.9 0.0069 2.4E-07 55.7 11.6 98 166-275 137-237 (241)
162 1a0r_P Phosducin, MEKA, PP33; 96.9 0.0011 3.9E-08 62.5 6.2 98 168-277 122-224 (245)
163 1vg5_A RSGI RUH-014, rhomboid 96.9 0.0013 4.4E-08 49.9 5.2 41 10-52 29-69 (73)
164 1ttn_A DC-UBP, dendritic cell- 96.9 0.0032 1.1E-07 51.4 7.9 79 357-442 14-93 (106)
165 1wji_A Tudor domain containing 96.9 0.0025 8.5E-08 47.0 6.5 41 11-53 10-50 (63)
166 1dv0_A DNA repair protein HHR2 96.9 0.00089 3.1E-08 46.4 3.8 40 11-52 5-44 (47)
167 4gew_A 5'-tyrosyl-DNA phosphod 96.9 0.00042 1.4E-08 69.2 3.0 39 11-50 46-84 (362)
168 2cvb_A Probable thiol-disulfid 96.8 0.004 1.4E-07 55.2 9.1 90 179-277 32-161 (188)
169 2knz_A Ubiquilin-4; cytoplasm, 96.8 0.0017 5.8E-08 46.2 5.2 40 10-51 11-51 (53)
170 1ilo_A Conserved hypothetical 96.8 0.0055 1.9E-07 45.7 8.4 74 183-270 2-76 (77)
171 2g3q_A Protein YBL047C; endocy 96.8 0.0021 7E-08 43.6 5.1 38 11-50 5-42 (43)
172 2p5q_A Glutathione peroxidase 96.8 0.009 3.1E-07 51.6 10.6 93 179-275 31-168 (170)
173 3uem_A Protein disulfide-isome 96.8 0.0043 1.5E-07 61.2 9.5 98 166-273 256-355 (361)
174 3cmi_A Peroxiredoxin HYR1; thi 96.8 0.0055 1.9E-07 53.6 9.1 89 179-275 31-168 (171)
175 1sji_A Calsequestrin 2, calseq 96.7 0.0078 2.7E-07 59.3 10.8 97 167-275 19-122 (350)
176 1xvw_A Hypothetical protein RV 96.7 0.0064 2.2E-07 52.2 9.0 85 180-271 35-156 (160)
177 1wju_A NEDD8 ultimate buster-1 96.7 0.0068 2.3E-07 48.9 8.3 72 363-441 12-88 (100)
178 2vup_A Glutathione peroxidase- 96.7 0.0088 3E-07 53.4 10.0 94 179-276 47-186 (190)
179 2bmx_A Alkyl hydroperoxidase C 96.7 0.0089 3E-07 53.6 10.0 93 179-275 44-170 (195)
180 4fo5_A Thioredoxin-like protei 96.6 0.0032 1.1E-07 53.1 6.6 83 179-271 31-141 (143)
181 2k6v_A Putative cytochrome C o 96.6 0.0082 2.8E-07 52.0 9.4 87 179-273 34-171 (172)
182 1we0_A Alkyl hydroperoxide red 96.6 0.0077 2.6E-07 53.5 9.3 93 179-275 30-157 (187)
183 3us3_A Calsequestrin-1; calciu 96.6 0.012 4E-07 58.6 11.6 101 165-275 19-124 (367)
184 2jy5_A Ubiquilin-1; UBA, alter 96.6 0.0029 9.8E-08 44.8 4.8 38 11-50 13-51 (52)
185 1zof_A Alkyl hydroperoxide-red 96.6 0.0072 2.5E-07 54.3 8.7 93 179-274 32-160 (198)
186 3f8u_A Protein disulfide-isome 96.5 0.0065 2.2E-07 62.4 9.3 100 166-275 359-461 (481)
187 1veg_A NEDD8 ultimate buster-1 96.5 0.0025 8.4E-08 49.5 4.5 41 11-53 30-70 (83)
188 2v1m_A Glutathione peroxidase; 96.5 0.023 7.9E-07 48.9 11.3 93 179-275 30-167 (169)
189 1uul_A Tryparedoxin peroxidase 96.4 0.013 4.3E-07 52.9 9.5 93 179-274 35-164 (202)
190 2l2d_A OTU domain-containing p 96.4 0.0036 1.2E-07 45.2 4.4 40 9-49 16-55 (73)
191 1qmv_A Human thioredoxin perox 96.4 0.015 5.2E-07 52.1 10.0 92 179-274 33-162 (197)
192 2bwb_A Ubiquitin-like protein 96.4 0.005 1.7E-07 42.3 4.9 38 11-49 8-45 (46)
193 2dah_A Ubiquilin-3; UBA domain 96.4 0.0044 1.5E-07 44.2 4.6 41 11-53 10-51 (54)
194 2ywm_A Glutaredoxin-like prote 96.3 0.018 6.3E-07 52.6 10.1 84 179-275 135-220 (229)
195 3v6c_B Ubiquitin; structural g 96.3 0.028 9.5E-07 44.1 9.8 72 364-442 15-87 (91)
196 2djk_A PDI, protein disulfide- 96.3 0.017 5.9E-07 48.4 9.1 89 177-275 20-115 (133)
197 3apo_A DNAJ homolog subfamily 96.3 0.0056 1.9E-07 67.0 7.5 98 167-275 124-221 (780)
198 2i81_A 2-Cys peroxiredoxin; st 96.3 0.02 6.7E-07 52.4 10.1 93 179-274 51-179 (213)
199 1a8l_A Protein disulfide oxido 96.3 0.036 1.2E-06 50.4 11.9 91 179-275 21-113 (226)
200 1wgn_A UBAP1, ubiquitin associ 96.3 0.0041 1.4E-07 44.9 4.0 48 3-53 13-60 (63)
201 1ndd_A NEDD8, protein (ubiquit 96.3 0.024 8.2E-07 42.4 8.7 68 368-442 2-70 (76)
202 1zye_A Thioredoxin-dependent p 96.2 0.019 6.6E-07 52.7 9.8 94 179-275 55-185 (220)
203 2h01_A 2-Cys peroxiredoxin; th 96.2 0.016 5.6E-07 51.6 9.1 93 179-274 30-158 (192)
204 1wiv_A UBP14, ubiquitin-specif 96.2 0.0069 2.4E-07 46.0 5.3 42 10-53 29-70 (73)
205 3dwv_A Glutathione peroxidase- 96.1 0.015 5.1E-07 51.7 8.3 90 179-275 45-183 (187)
206 2obi_A PHGPX, GPX-4, phospholi 96.1 0.027 9.4E-07 49.6 9.9 87 179-272 46-181 (183)
207 4dwf_A HLA-B-associated transc 96.1 0.032 1.1E-06 43.6 9.1 72 364-442 3-74 (90)
208 3mtn_B UBA80, ubcep1, ubiquiti 96.1 0.027 9.3E-07 43.2 8.6 70 366-442 3-73 (85)
209 2b7k_A SCO1 protein; metalloch 96.1 0.04 1.4E-06 49.6 11.0 95 179-277 40-181 (200)
210 1vej_A Riken cDNA 4931431F19; 96.1 0.011 3.7E-07 44.9 5.7 42 10-52 29-70 (74)
211 3apo_A DNAJ homolog subfamily 96.0 0.021 7E-07 62.5 10.2 116 153-277 650-769 (780)
212 2dkl_A Trinucleotide repeat co 96.0 0.0095 3.2E-07 46.6 5.3 41 11-53 22-62 (85)
213 1wr1_B Ubiquitin-like protein 96.0 0.0087 3E-07 43.3 4.7 40 10-50 17-56 (58)
214 2dzi_A Ubiquitin-like protein 96.0 0.039 1.3E-06 41.9 8.9 72 364-442 5-77 (81)
215 3a9j_A Ubiquitin; protein comp 95.9 0.038 1.3E-06 41.2 8.6 68 368-442 2-70 (76)
216 1wh3_A 59 kDa 2'-5'-oligoadeny 95.9 0.038 1.3E-06 42.7 8.8 72 364-442 5-77 (87)
217 2p31_A CL683, glutathione pero 95.9 0.019 6.4E-07 50.8 7.8 89 179-274 48-180 (181)
218 2dak_A Ubiquitin carboxyl-term 95.9 0.0071 2.4E-07 44.5 4.1 44 7-52 6-49 (63)
219 3kij_A Probable glutathione pe 95.9 0.059 2E-06 47.3 10.8 90 179-275 37-170 (180)
220 2hj8_A Interferon-induced 17 k 95.8 0.047 1.6E-06 42.6 8.8 70 366-442 4-74 (88)
221 2wyq_A HHR23A, UV excision rep 95.8 0.057 2E-06 41.4 9.3 73 364-442 3-78 (85)
222 2qc7_A ERP31, ERP28, endoplasm 95.8 0.057 1.9E-06 50.6 10.9 96 166-274 12-118 (240)
223 1yx5_B Ubiquitin; proteasome, 95.8 0.042 1.4E-06 43.7 8.5 68 368-442 2-70 (98)
224 1uel_A HHR23B, UV excision rep 95.8 0.05 1.7E-06 43.1 8.9 69 368-442 2-73 (95)
225 3dbh_I NEDD8; cell cycle, acti 95.7 0.059 2E-06 41.6 9.1 71 364-441 10-81 (88)
226 2cwb_A Chimera of immunoglobul 95.7 0.013 4.3E-07 47.9 5.2 41 11-52 67-107 (108)
227 2bwf_A Ubiquitin-like protein 95.7 0.047 1.6E-06 41.0 8.3 68 367-442 5-73 (77)
228 2i3y_A Epididymal secretory gl 95.7 0.11 3.7E-06 47.6 12.3 34 241-275 178-211 (215)
229 3u5r_E Uncharacterized protein 95.7 0.043 1.5E-06 50.1 9.5 93 179-278 57-190 (218)
230 3gkn_A Bacterioferritin comigr 95.7 0.052 1.8E-06 46.6 9.5 86 179-271 34-158 (163)
231 2b5e_A Protein disulfide-isome 95.7 0.019 6.5E-07 59.3 7.8 97 167-275 366-467 (504)
232 3phx_B Ubiquitin-like protein 95.6 0.083 2.8E-06 40.0 9.4 70 366-442 4-74 (79)
233 2f8a_A Glutathione peroxidase 95.6 0.072 2.5E-06 48.4 10.7 34 240-274 173-206 (208)
234 2c0g_A ERP29 homolog, windbeut 95.6 0.11 3.7E-06 48.9 11.9 98 165-276 22-133 (248)
235 4hcn_B Polyubiquitin, ubiquiti 95.6 0.043 1.5E-06 43.8 7.8 72 364-442 20-92 (98)
236 3ztl_A Thioredoxin peroxidase; 95.5 0.039 1.3E-06 50.6 8.4 86 179-271 68-194 (222)
237 1wyw_B Ubiquitin-like protein 95.5 0.058 2E-06 42.9 8.3 71 364-441 19-90 (97)
238 2gs3_A PHGPX, GPX-4, phospholi 95.5 0.052 1.8E-06 48.0 8.9 88 179-273 48-184 (185)
239 2cpw_A CBL-interacting protein 95.5 0.019 6.6E-07 42.3 4.9 41 11-53 20-61 (64)
240 1wjn_A Tubulin-folding protein 95.5 0.077 2.6E-06 42.2 9.0 78 364-443 7-91 (97)
241 1xzo_A BSSCO, hypothetical pro 95.4 0.086 2.9E-06 45.5 10.1 40 235-275 131-172 (174)
242 2hls_A Protein disulfide oxido 95.4 0.12 3.9E-06 48.2 11.3 88 179-277 137-228 (243)
243 3qcp_A QSOX from trypanosoma b 95.4 0.039 1.3E-06 56.7 8.6 101 167-274 31-151 (470)
244 1uh6_A Ubiquitin-like 5; beta- 95.4 0.094 3.2E-06 42.2 9.1 74 363-443 25-99 (100)
245 4eew_A Large proline-rich prot 95.3 0.086 3E-06 40.8 8.8 72 364-442 15-86 (88)
246 2faz_A Ubiquitin-like containi 95.3 0.077 2.6E-06 40.0 8.2 70 366-442 2-74 (78)
247 3k9o_B Ubiquitin, UBB+1; E2-25 95.2 0.078 2.7E-06 41.8 8.3 69 367-442 2-71 (96)
248 3a2v_A Probable peroxiredoxin; 95.2 0.082 2.8E-06 49.7 9.8 93 179-274 32-161 (249)
249 3n3k_B Ubiquitin; hydrolase, p 95.2 0.066 2.3E-06 41.0 7.6 70 366-442 3-73 (85)
250 2r37_A Glutathione peroxidase 95.2 0.18 6.1E-06 45.8 11.7 34 241-275 160-193 (207)
251 2dai_A Ubadc1, ubiquitin assoc 95.2 0.022 7.5E-07 44.3 4.6 41 11-53 30-70 (83)
252 2ywm_A Glutaredoxin-like prote 95.1 0.19 6.4E-06 45.7 11.8 102 167-275 5-115 (229)
253 1whc_A RSGI RUH-027, UBA/UBX 3 95.1 0.022 7.4E-07 42.0 4.2 41 11-53 10-51 (64)
254 3ga4_A Dolichyl-diphosphooligo 95.1 0.12 4.3E-06 46.0 10.1 104 165-275 24-153 (178)
255 1z6n_A Hypothetical protein PA 95.1 0.073 2.5E-06 46.8 8.5 73 178-259 52-129 (167)
256 2ls5_A Uncharacterized protein 94.1 0.0038 1.3E-07 53.7 0.0 95 173-270 26-143 (159)
257 2ooa_A E3 ubiquitin-protein li 95.0 0.031 1.1E-06 38.9 4.4 39 9-49 10-48 (52)
258 2jsy_A Probable thiol peroxida 95.0 0.14 4.7E-06 44.1 10.0 89 179-274 43-166 (167)
259 2dna_A Unnamed protein product 95.0 0.049 1.7E-06 40.4 5.8 42 11-53 20-61 (67)
260 1we6_A Splicing factor, putati 94.8 0.18 6.2E-06 41.0 9.7 71 365-442 26-101 (111)
261 3me7_A Putative uncharacterize 94.8 0.19 6.3E-06 43.8 10.3 50 227-277 105-164 (170)
262 2uyz_B Small ubiquitin-related 94.8 0.15 5E-06 38.6 8.4 69 366-441 3-72 (79)
263 2cp9_A EF-TS, EF-TSMT, elongat 94.8 0.024 8.3E-07 41.6 3.6 37 12-49 11-47 (64)
264 2lus_A Thioredoxion; CR-Trp16, 93.8 0.0052 1.8E-07 51.5 0.0 74 179-256 24-124 (143)
265 1j8c_A Ubiquitin-like protein 94.8 0.23 8E-06 41.4 10.3 72 363-442 29-101 (125)
266 2ekk_A UBA domain from E3 ubiq 94.7 0.038 1.3E-06 38.0 4.3 37 11-50 10-46 (47)
267 1sif_A Ubiquitin; hydrophobic 94.7 0.12 4E-06 40.2 7.8 70 366-442 9-79 (88)
268 2ojr_A Ubiquitin; lanthide-bin 94.7 0.2 6.9E-06 40.8 9.5 71 365-442 34-105 (111)
269 1wy8_A NP95-like ring finger p 94.7 0.25 8.5E-06 38.2 9.7 72 364-442 5-79 (89)
270 3keb_A Probable thiol peroxida 94.6 0.14 4.9E-06 47.3 9.5 45 230-275 118-176 (224)
271 1wx7_A Ubiquilin 3; ubiquitin- 94.6 0.25 8.5E-06 39.8 9.8 72 363-442 14-86 (106)
272 2kan_A Uncharacterized protein 94.6 0.17 5.9E-06 39.9 8.6 71 364-441 13-84 (94)
273 4fbj_B NEDD8; effector-HOST ta 94.5 0.15 5.2E-06 39.6 8.1 68 368-442 2-70 (88)
274 2dag_A Ubiquitin carboxyl-term 94.5 0.044 1.5E-06 41.6 4.7 41 11-53 10-51 (74)
275 2d9s_A CBL E3 ubiquitin protei 94.5 0.051 1.8E-06 38.0 4.5 40 9-50 8-47 (53)
276 4f9z_D Endoplasmic reticulum r 94.5 0.64 2.2E-05 42.4 13.6 108 164-275 115-225 (227)
277 2kc2_A Talin-1, F1; FERM, adhe 94.5 0.22 7.6E-06 41.8 9.3 76 368-443 13-121 (128)
278 3ixr_A Bacterioferritin comigr 94.4 0.23 8E-06 43.6 10.2 87 179-272 50-175 (179)
279 1vdl_A Ubiquitin carboxyl-term 94.4 0.15 5E-06 38.1 7.1 42 10-52 24-66 (80)
280 4g2e_A Peroxiredoxin; redox pr 94.4 0.13 4.4E-06 44.2 8.3 90 179-271 29-154 (157)
281 4gqc_A Thiol peroxidase, perox 94.4 0.11 3.7E-06 45.2 7.8 95 178-275 31-160 (164)
282 3plu_A Ubiquitin-like modifier 94.4 0.24 8.4E-06 39.1 8.9 71 364-441 19-90 (93)
283 1n8j_A AHPC, alkyl hydroperoxi 94.4 0.28 9.4E-06 43.4 10.6 89 179-274 29-155 (186)
284 3vdz_A Ubiquitin-40S ribosomal 94.4 0.18 6.1E-06 41.1 8.6 71 365-442 34-105 (111)
285 2klc_A Ubiquilin-1; ubiquitin- 94.3 0.25 8.4E-06 39.6 9.1 70 365-442 24-94 (101)
286 1xvq_A Thiol peroxidase; thior 94.3 0.24 8.1E-06 43.2 9.9 86 180-272 44-165 (175)
287 1yqb_A Ubiquilin 3; structural 94.3 0.21 7E-06 40.0 8.5 71 364-442 20-91 (100)
288 1otr_A Protein CUE2; protein-p 94.3 0.061 2.1E-06 37.3 4.5 41 11-51 5-45 (49)
289 1wia_A Hypothetical ubiquitin- 94.2 0.16 5.5E-06 40.0 7.8 70 364-442 5-75 (95)
290 1wjk_A C330018D20RIK protein; 94.2 0.24 8.3E-06 39.3 8.8 82 180-275 15-96 (100)
291 2cp8_A NEXT to BRCA1 gene 1 pr 94.2 0.072 2.5E-06 37.6 4.8 45 8-53 7-51 (54)
292 1wx8_A Riken cDNA 4931431F19; 94.1 0.23 8E-06 39.0 8.5 71 363-441 14-85 (96)
293 1wgl_A TOLL-interacting protei 94.1 0.088 3E-06 38.1 5.2 43 11-53 10-52 (59)
294 2c0d_A Thioredoxin peroxidase 93.9 0.41 1.4E-05 43.8 11.0 89 179-274 55-183 (221)
295 4a20_A Ubiquitin-like protein 93.8 0.28 9.7E-06 39.1 8.4 73 363-441 16-92 (98)
296 2e7p_A Glutaredoxin; thioredox 93.8 0.15 5E-06 41.0 6.8 89 171-272 11-105 (116)
297 2kdb_A Homocysteine-responsive 93.7 0.17 5.9E-06 40.5 7.0 71 364-440 21-97 (99)
298 2a4v_A Peroxiredoxin DOT5; yea 93.7 0.56 1.9E-05 39.9 10.9 44 230-275 102-154 (159)
299 2d07_B Ubiquitin-like protein 93.7 0.38 1.3E-05 37.9 9.0 72 364-442 15-87 (93)
300 1we7_A SF3A1 protein; structur 93.7 0.3 1E-05 39.9 8.7 71 365-442 24-105 (115)
301 3m62_B UV excision repair prot 93.7 0.19 6.7E-06 40.5 7.4 69 367-442 2-71 (106)
302 2pn8_A Peroxiredoxin-4; thiore 93.7 0.35 1.2E-05 43.8 10.0 89 179-274 47-176 (211)
303 1wz0_A Ubiquitin-like protein 93.6 0.62 2.1E-05 37.6 10.1 72 364-442 22-94 (104)
304 2kk8_A Uncharacterized protein 93.6 0.27 9.2E-06 37.9 7.7 71 366-442 10-81 (84)
305 1v2y_A 3300001G02RIK protein; 93.5 0.23 7.8E-06 40.3 7.4 71 365-441 6-92 (105)
306 1v86_A DNA segment, CHR 7, way 93.5 0.35 1.2E-05 38.1 8.5 70 363-441 14-84 (95)
307 3uem_A Protein disulfide-isome 93.4 0.39 1.3E-05 46.9 10.6 111 158-276 116-231 (361)
308 2lxa_A Ubiquitin-like protein 93.4 0.26 8.9E-06 38.4 7.4 70 367-443 2-76 (87)
309 3b08_A Polyubiquitin-C, ubiqui 93.3 0.35 1.2E-05 41.0 8.8 70 366-442 76-146 (152)
310 2kdi_A Ubiquitin, vacuolar pro 93.3 0.39 1.3E-05 39.3 8.6 71 365-442 8-79 (114)
311 2gow_A HCG-1 protein, ubiquiti 93.3 0.44 1.5E-05 39.8 9.0 67 364-436 15-88 (125)
312 3u30_A Ubiquitin, linear DI-ub 93.2 0.28 9.7E-06 43.0 8.3 73 363-442 17-90 (172)
313 1vek_A UBP14, ubiquitin-specif 93.2 0.11 3.8E-06 40.3 4.9 41 11-53 30-71 (84)
314 3p7x_A Probable thiol peroxida 93.2 0.23 7.9E-06 42.8 7.6 42 230-272 113-165 (166)
315 1jkg_B TAP; NTF2-like domain, 93.2 0.016 5.6E-07 54.7 0.0 40 11-51 199-238 (250)
316 1wxv_A BAG-family molecular ch 93.0 0.54 1.9E-05 36.6 8.9 70 365-441 6-81 (92)
317 2io0_B Small ubiquitin-related 93.0 0.66 2.3E-05 36.4 9.2 71 365-442 4-75 (91)
318 1ttz_A Conserved hypothetical 92.9 0.6 2.1E-05 36.1 8.8 75 184-275 3-77 (87)
319 2yzh_A Probable thiol peroxida 92.8 1.5 5.2E-05 37.6 12.5 33 240-273 133-170 (171)
320 2eke_C Ubiquitin-like protein 92.8 0.78 2.7E-05 37.1 9.7 71 363-441 28-99 (106)
321 3b08_A Polyubiquitin-C, ubiqui 92.8 0.39 1.3E-05 40.7 8.4 68 368-442 2-70 (152)
322 2kjr_A CG11242; UBL, ubiquitin 92.8 0.37 1.3E-05 38.2 7.6 76 364-441 13-92 (95)
323 2io1_B Small ubiquitin-related 92.8 0.6 2E-05 36.9 8.7 72 364-442 5-77 (94)
324 2daj_A KIAA0977 protein, COBL- 92.7 0.57 2E-05 36.1 8.0 69 364-436 8-76 (91)
325 1wgd_A Homocysteine-responsive 92.6 0.63 2.2E-05 36.3 8.7 71 365-441 6-82 (93)
326 3qpm_A Peroxiredoxin; oxidored 92.6 0.38 1.3E-05 44.6 8.6 87 179-272 76-203 (240)
327 1se9_A Ubiquitin family; ubiqu 92.5 0.95 3.2E-05 37.8 9.9 67 365-437 15-88 (126)
328 3a4r_A Nfatc2-interacting prot 92.3 1.1 3.8E-05 33.9 9.4 69 365-440 6-75 (79)
329 4hde_A SCO1/SENC family lipopr 92.2 1.1 3.9E-05 38.8 10.8 35 239-274 133-169 (170)
330 1psq_A Probable thiol peroxida 92.2 1 3.4E-05 38.5 10.3 42 230-272 110-162 (163)
331 2kd0_A LRR repeats and ubiquit 92.2 0.5 1.7E-05 36.4 7.5 68 366-441 12-80 (85)
332 1wm3_A Ubiquitin-like protein 92.2 1 3.6E-05 33.4 9.0 67 367-440 2-68 (72)
333 2k8h_A Small ubiquitin protein 92.1 0.88 3E-05 37.1 9.1 71 364-441 24-95 (110)
334 2l7r_A Ubiquitin-like protein 92.0 0.53 1.8E-05 36.9 7.6 69 365-442 18-87 (93)
335 1x1m_A Ubiquitin-like protein 91.9 0.54 1.8E-05 37.9 7.7 71 365-441 11-96 (107)
336 3tjj_A Peroxiredoxin-4; thiore 91.8 0.35 1.2E-05 45.4 7.4 91 179-272 90-217 (254)
337 1v5o_A 1700011N24RIK protein; 91.7 0.67 2.3E-05 36.9 8.0 71 365-441 6-81 (102)
338 2lbc_A Ubiquitin carboxyl-term 91.5 0.21 7.3E-06 41.8 4.9 41 10-52 78-118 (126)
339 1eej_A Thiol:disulfide interch 91.4 0.86 3E-05 41.3 9.4 85 178-274 84-210 (216)
340 2crn_A Ubash3A protein; compac 91.4 0.3 1E-05 35.8 5.0 41 11-53 10-51 (64)
341 1v58_A Thiol:disulfide interch 91.3 0.81 2.8E-05 42.3 9.3 46 230-277 190-235 (241)
342 3rt3_B Ubiquitin-like protein 91.3 1.1 3.9E-05 38.4 9.6 71 365-442 80-151 (159)
343 3b1l_X E3 ubiquitin-protein li 90.5 0.04 1.4E-06 41.4 0.0 67 368-441 2-69 (76)
344 3rt3_B Ubiquitin-like protein 91.1 0.93 3.2E-05 39.0 8.9 69 367-441 3-73 (159)
345 1wgg_A Ubiquitin carboxyl-term 90.8 0.43 1.5E-05 37.8 5.8 69 364-441 5-75 (96)
346 1wgh_A Ubiquitin-like 3, HCG-1 90.6 1.4 4.9E-05 36.1 9.0 65 365-435 15-86 (116)
347 1tp9_A Peroxiredoxin, PRX D (t 90.5 0.82 2.8E-05 39.2 7.9 19 240-260 128-146 (162)
348 3kp9_A Vkorc1/thioredoxin doma 90.3 0.22 7.4E-06 48.0 4.3 90 166-271 185-276 (291)
349 4eo3_A Bacterioferritin comigr 90.1 0.86 2.9E-05 44.3 8.6 87 179-275 23-139 (322)
350 2v2g_A Peroxiredoxin 6; oxidor 89.8 1.6 5.5E-05 40.2 9.8 90 181-273 30-163 (233)
351 3zrd_A Thiol peroxidase; oxido 89.7 1.7 5.7E-05 38.8 9.6 85 179-270 77-199 (200)
352 2dhy_A CUE domain-containing p 89.6 0.46 1.6E-05 35.1 4.7 46 6-51 14-59 (67)
353 3q3f_A Ribonuclease/ubiquitin 89.6 0.92 3.1E-05 40.7 7.6 69 366-441 105-174 (189)
354 3l0w_B Monoubiquitinated proli 89.4 1.6 5.6E-05 38.2 9.1 68 368-442 2-70 (169)
355 3sbc_A Peroxiredoxin TSA1; alp 89.4 1.9 6.6E-05 39.4 9.8 91 179-272 51-178 (216)
356 3m63_B Ubiquitin domain-contai 89.4 0.46 1.6E-05 37.9 5.0 69 365-441 27-96 (101)
357 3gyk_A 27KDA outer membrane pr 89.3 2.6 9E-05 36.1 10.3 39 230-275 135-173 (175)
358 1nm3_A Protein HI0572; hybrid, 89.0 1.9 6.5E-05 39.4 9.7 86 179-272 32-164 (241)
359 1v5t_A 8430435I17RIK protein; 89.0 1.2 3.9E-05 34.6 7.0 71 365-441 6-79 (90)
360 4ae4_A Ubiquitin-associated pr 89.0 0.39 1.3E-05 39.7 4.3 38 12-51 78-115 (118)
361 1oqy_A HHR23A, UV excision rep 89.0 0.78 2.7E-05 45.5 7.3 69 365-439 6-77 (368)
362 2lva_A Ubiquitin carboxyl-term 88.5 0.08 2.7E-06 43.5 0.0 41 11-52 19-60 (129)
363 2al3_A TUG long isoform; TUG U 88.8 1.4 4.7E-05 34.5 7.0 68 367-441 10-78 (90)
364 1wf9_A NPL4 family protein; be 88.6 1.6 5.5E-05 35.1 7.8 74 367-442 8-92 (107)
365 1q98_A Thiol peroxidase, TPX; 88.6 1.2 4.1E-05 38.1 7.6 30 229-259 110-148 (165)
366 4a3p_A Ubiquitin carboxyl-term 88.3 0.8 2.7E-05 41.9 6.4 71 372-443 134-207 (217)
367 3ai5_A Yeast enhanced green fl 88.2 1.8 6.2E-05 41.8 9.1 71 365-442 232-303 (307)
368 2dzj_A Synaptic glycoprotein S 87.9 1.6 5.6E-05 33.8 7.1 71 367-441 11-85 (88)
369 3jyu_A Ubiquitin carboxyl-term 87.7 1.6 5.5E-05 40.3 8.2 63 379-442 154-218 (231)
370 3kyd_D Small ubiquitin-related 87.2 3.3 0.00011 33.9 8.8 69 364-439 38-107 (115)
371 2juj_A E3 ubiquitin-protein li 86.9 0.89 3E-05 31.9 4.3 43 8-52 5-47 (56)
372 2daf_A FLJ35834 protein; hypot 86.8 3.7 0.00013 33.7 8.9 70 365-441 14-85 (118)
373 3tue_A Tryparedoxin peroxidase 86.6 2.9 0.0001 38.2 9.2 91 179-272 55-182 (219)
374 2hls_A Protein disulfide oxido 86.2 3.4 0.00012 38.0 9.6 85 178-275 23-117 (243)
375 4ae4_A Ubiquitin-associated pr 85.7 0.94 3.2E-05 37.4 4.8 45 3-50 2-46 (118)
376 1t3b_A Thiol:disulfide interch 85.7 3.8 0.00013 36.8 9.5 82 179-272 85-208 (211)
377 2kj6_A Tubulin folding cofacto 85.6 6.7 0.00023 30.9 9.7 76 364-441 12-92 (97)
378 2wfc_A Peroxiredoxin 5, PRDX5; 85.3 6.4 0.00022 33.8 10.4 88 179-270 30-159 (167)
379 3u5e_m 60S ribosomal protein L 85.0 0.17 6E-06 42.3 0.0 67 368-441 2-69 (128)
380 3pge_A SUMO-modified prolifera 84.6 4.6 0.00016 36.4 9.2 68 363-438 26-93 (200)
381 3mng_A Peroxiredoxin-5, mitoch 84.6 3.7 0.00013 35.8 8.5 19 239-259 137-155 (173)
382 1hyu_A AHPF, alkyl hydroperoxi 84.4 7.2 0.00025 40.1 12.1 81 179-273 116-198 (521)
383 3u30_A Ubiquitin, linear DI-ub 84.3 3.1 0.00011 36.1 7.9 69 366-441 96-165 (172)
384 3uma_A Hypothetical peroxiredo 82.8 4.2 0.00014 35.8 8.2 18 240-259 149-166 (184)
385 2jxx_A Nfatc2-interacting prot 82.7 8.6 0.00029 30.4 9.1 71 364-441 23-94 (97)
386 3tix_A Ubiquitin-like protein 82.6 3.9 0.00013 36.6 7.7 69 363-439 54-122 (207)
387 2fgx_A Putative thioredoxin; N 82.5 3.8 0.00013 33.0 7.1 75 183-270 31-106 (107)
388 2oo9_A E3 ubiquitin-protein li 82.3 2.4 8E-05 28.6 4.6 40 9-50 3-42 (46)
389 2k8s_A Thioredoxin; dimer, str 81.3 4 0.00014 30.1 6.5 58 185-254 5-66 (80)
390 2dzm_A FAS-associated factor 1 81.0 7.2 0.00025 30.9 8.1 70 366-442 9-79 (100)
391 1v6e_A Cytoskeleton-associated 80.1 9 0.00031 29.7 8.4 74 366-441 7-84 (95)
392 1tr8_A Conserved protein (MTH1 80.1 1.6 5.3E-05 35.1 3.9 32 13-45 68-99 (102)
393 1xcc_A 1-Cys peroxiredoxin; un 79.8 9.2 0.00031 34.6 9.6 34 239-273 127-164 (220)
394 4b6w_A Tubulin-specific chaper 79.7 6.6 0.00023 30.1 7.3 69 366-439 2-78 (86)
395 3u5c_f 40S ribosomal protein S 79.1 0.39 1.3E-05 41.6 0.0 67 368-441 2-69 (152)
396 1aip_C EF-TS, elongation facto 77.9 1.7 6E-05 38.9 3.9 37 12-49 5-41 (196)
397 3h93_A Thiol:disulfide interch 77.9 9.8 0.00034 33.0 9.0 41 231-275 144-184 (192)
398 1prx_A HORF6; peroxiredoxin, h 77.7 23 0.00078 31.9 11.7 35 239-274 130-168 (224)
399 1oqy_A HHR23A, UV excision rep 77.4 1.3 4.3E-05 44.0 3.1 44 6-51 164-207 (368)
400 3q6o_A Sulfhydryl oxidase 1; p 77.4 13 0.00046 33.5 10.1 64 178-253 155-218 (244)
401 2fnj_B Transcription elongatio 77.3 4.7 0.00016 33.2 6.0 60 369-435 3-63 (118)
402 2cq9_A GLRX2 protein, glutared 76.1 7.2 0.00025 32.0 7.1 77 165-254 12-91 (130)
403 2di0_A Activating signal coint 75.9 6.1 0.00021 29.4 5.7 47 5-51 8-54 (71)
404 1t0y_A Tubulin folding cofacto 75.8 13 0.00046 30.3 8.6 75 365-441 5-83 (122)
405 1xb2_B EF-TS, elongation facto 74.9 2.2 7.4E-05 40.9 3.9 38 11-49 5-42 (291)
406 3bj5_A Protein disulfide-isome 73.7 21 0.00073 29.9 9.7 62 214-276 63-128 (147)
407 3shq_A UBLCP1; phosphatase, hy 70.9 10 0.00036 36.6 7.8 71 365-441 4-76 (320)
408 2qho_B E3 ubiquitin-protein li 70.4 9.3 0.00032 26.0 5.0 41 11-51 10-50 (53)
409 4dbg_A Ranbp-type and C3HC4-ty 69.7 18 0.00062 28.9 7.7 74 360-440 16-95 (105)
410 1ego_A Glutaredoxin; electron 64.2 20 0.0007 26.0 6.8 73 184-272 3-81 (85)
411 3hd5_A Thiol:disulfide interch 63.1 35 0.0012 29.4 9.1 40 230-275 142-184 (195)
412 1p3q_Q VPS9P, vacuolar protein 62.3 3 0.0001 29.3 1.4 43 7-49 9-51 (54)
413 2pwj_A Mitochondrial peroxired 60.5 24 0.00081 30.1 7.4 55 181-237 45-102 (171)
414 2ht9_A Glutaredoxin-2; thiored 56.7 34 0.0012 28.6 7.5 74 168-254 37-113 (146)
415 3rhb_A ATGRXC5, glutaredoxin-C 55.2 55 0.0019 25.4 8.2 72 167-254 6-84 (113)
416 2yan_A Glutaredoxin-3; oxidore 54.9 53 0.0018 25.3 8.0 67 171-254 8-83 (105)
417 2in3_A Hypothetical protein; D 54.9 28 0.00094 30.6 7.0 47 229-277 166-212 (216)
418 4ajy_B Transcription elongatio 54.5 22 0.00075 29.1 5.6 59 371-436 5-64 (118)
419 3gv1_A Disulfide interchange p 53.7 17 0.00057 30.7 5.1 46 226-277 96-141 (147)
420 1kte_A Thioltransferase; redox 50.5 45 0.0015 25.4 6.9 60 183-254 14-79 (105)
421 3ivf_A Talin-1; FERM domain, c 48.3 70 0.0024 31.0 9.3 71 365-435 84-157 (371)
422 1fov_A Glutaredoxin 3, GRX3; a 48.0 64 0.0022 22.9 7.1 54 186-253 5-61 (82)
423 1sji_A Calsequestrin 2, calseq 45.6 80 0.0027 30.0 9.2 43 233-275 299-346 (350)
424 2hze_A Glutaredoxin-1; thiored 45.5 60 0.0021 25.4 7.0 62 185-254 22-86 (114)
425 2lbc_A Ubiquitin carboxyl-term 45.0 17 0.00057 29.9 3.5 40 12-53 5-45 (126)
426 1wik_A Thioredoxin-like protei 44.8 66 0.0023 25.0 7.1 54 178-244 13-75 (109)
427 1h75_A Glutaredoxin-like prote 44.0 84 0.0029 22.3 7.4 52 184-244 3-55 (81)
428 3ivf_A Talin-1; FERM domain, c 43.7 42 0.0014 32.6 6.9 70 366-438 3-77 (371)
429 3ic4_A Glutaredoxin (GRX-1); s 43.3 95 0.0033 22.7 8.9 70 187-271 17-91 (92)
430 4f82_A Thioredoxin reductase; 42.3 1.1E+02 0.0036 26.6 8.6 17 240-258 140-156 (176)
431 3onh_A Ubiquitin-activating en 42.2 41 0.0014 27.8 5.3 53 387-441 20-75 (127)
432 3kzq_A Putative uncharacterize 41.7 48 0.0017 29.0 6.4 46 229-276 159-204 (208)
433 2r2j_A Thioredoxin domain-cont 40.5 91 0.0031 30.1 8.8 103 164-275 221-329 (382)
434 3c1r_A Glutaredoxin-1; oxidize 39.8 97 0.0033 24.5 7.4 75 163-254 8-93 (118)
435 3qij_A Protein 4.1; cytoskelet 39.4 51 0.0017 31.0 6.5 69 364-433 15-83 (296)
436 3msz_A Glutaredoxin 1; alpha-b 39.3 70 0.0024 23.1 6.1 57 184-254 6-72 (89)
437 1q02_A Sequestosome 1; helical 38.9 18 0.00062 25.0 2.3 35 11-47 11-47 (52)
438 2khp_A Glutaredoxin; thioredox 38.5 69 0.0024 23.6 6.0 48 184-243 8-60 (92)
439 2wci_A Glutaredoxin-4; redox-a 37.5 98 0.0033 25.5 7.3 66 167-244 22-95 (135)
440 1h4r_A Merlin; FERM, neurofibr 37.3 94 0.0032 29.2 8.1 69 364-435 20-88 (314)
441 3q8g_A CRAL-TRIO domain-contai 36.2 36 0.0012 32.6 4.9 45 4-49 34-84 (320)
442 2h8l_A Protein disulfide-isome 36.1 1.2E+02 0.0039 27.4 8.3 56 216-275 169-230 (252)
443 3us3_A Calsequestrin-1; calciu 35.6 2E+02 0.0068 27.5 10.3 93 181-276 248-349 (367)
444 3dwa_A SUBB, subtilase cytotox 33.8 77 0.0026 25.8 5.6 45 165-220 53-100 (126)
445 2klx_A Glutaredoxin; thioredox 32.8 92 0.0032 22.7 5.9 49 184-244 8-60 (89)
446 1r5l_A Alpha-TTP, protein (alp 32.7 26 0.00088 32.0 3.1 45 4-49 3-56 (262)
447 2i1j_A Moesin; FERM, coiled-co 32.3 1.3E+02 0.0044 31.3 8.7 69 365-435 3-71 (575)
448 2xzm_9 RPS31E; ribosome, trans 31.4 10 0.00034 33.8 0.0 56 368-430 2-57 (189)
449 3feu_A Putative lipoprotein; a 31.3 56 0.0019 28.2 5.0 43 229-275 142-184 (185)
450 2cos_A Serine/threonine protei 31.1 46 0.0016 23.2 3.3 36 11-48 10-46 (54)
451 2h8l_A Protein disulfide-isome 31.1 2.8E+02 0.0097 24.6 10.3 92 168-272 13-110 (252)
452 3ipz_A Monothiol glutaredoxin- 30.7 1.7E+02 0.0057 22.6 7.4 66 168-245 6-79 (109)
453 1ef1_A Moesin; membrane, FERM 30.1 1.5E+02 0.0052 27.3 8.2 67 367-435 2-68 (294)
454 1r7h_A NRDH-redoxin; thioredox 29.6 1.4E+02 0.0047 20.5 8.6 66 185-270 4-73 (75)
455 1aua_A Phosphatidylinositol tr 28.9 51 0.0018 30.7 4.6 44 4-48 25-74 (296)
456 4dbg_B Ring finger protein 31; 28.9 37 0.0013 29.2 3.1 37 10-47 102-138 (162)
457 1xiy_A Peroxiredoxin, pfaop; a 28.5 1.6E+02 0.0055 25.4 7.5 56 179-237 42-103 (182)
458 4dvc_A Thiol:disulfide interch 28.0 69 0.0024 26.8 4.9 56 202-274 126-181 (184)
459 1vkf_A Glycerol uptake operon 27.4 33 0.0011 30.4 2.6 72 167-248 43-114 (188)
460 3f4s_A Alpha-DSBA1, putative u 26.8 88 0.003 28.1 5.6 47 229-276 160-212 (226)
461 3v7o_A Minor nucleoprotein VP3 25.5 15 0.0005 33.4 0.0 67 364-438 19-85 (227)
462 3bci_A Disulfide bond protein 25.2 90 0.0031 26.4 5.2 40 229-275 139-178 (186)
463 2znm_A Thiol:disulfide interch 24.9 90 0.0031 26.5 5.2 42 229-276 140-181 (195)
464 2l9b_A MRNA 3'-END-processing 24.1 28 0.00095 28.0 1.4 41 4-48 48-88 (109)
465 3gha_A Disulfide bond formatio 23.8 1.1E+02 0.0036 26.8 5.4 42 229-277 153-194 (202)
466 1ufz_A Hypothetical protein BA 23.6 93 0.0032 23.6 4.1 45 5-50 26-75 (83)
467 2d3g_P Ubiquitin interacting m 23.4 60 0.002 18.9 2.3 17 308-324 3-19 (26)
468 2j9u_A VPS28, vacuolar protein 23.3 43 0.0015 26.3 2.3 24 22-49 70-93 (96)
469 2j9w_A VPS28, VPS28-PROV prote 23.2 43 0.0015 26.6 2.3 23 23-49 76-98 (102)
470 3gmf_A Protein-disulfide isome 23.1 1.1E+02 0.0036 27.1 5.3 41 230-277 158-199 (205)
471 3pvl_A Myosin VIIA isoform 1; 23.1 1.4E+02 0.0047 31.7 6.9 47 366-412 263-309 (655)
472 2wem_A Glutaredoxin-related pr 22.8 2.4E+02 0.0082 22.3 7.0 65 168-245 8-82 (118)
473 3kts_A Glycerol uptake operon 22.7 52 0.0018 29.2 3.0 98 167-275 41-150 (192)
474 2rem_A Disulfide oxidoreductas 22.1 1.2E+02 0.0041 25.6 5.4 40 229-275 145-184 (193)
475 1olm_A SEC14-like protein 2; l 21.8 91 0.0031 30.5 5.0 46 3-49 6-58 (403)
476 2npt_A Dual specificity mitoge 21.7 2.8E+02 0.0094 21.5 6.4 46 364-409 12-59 (106)
477 3qmx_A Glutaredoxin A, glutare 21.5 2.7E+02 0.0091 21.1 6.9 56 182-254 17-78 (99)
478 3gn3_A Putative protein-disulf 20.9 69 0.0024 27.7 3.5 38 229-270 144-181 (182)
No 1
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=2.4e-28 Score=222.24 Aligned_cols=129 Identities=21% Similarity=0.280 Sum_probs=120.2
Q ss_pred HHHHHhhcCCCccCcccCcHHHHHHHH----HHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCC
Q 013379 150 RDNLASLYRPPFHLMFNGSFEKAKDAA----SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT 225 (444)
Q Consensus 150 ~~~l~~~f~pp~~~~~~gs~~~A~~~A----~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s 225 (444)
.+.|.++||++||.||+|+|++|++.| ++++||||||||+++|++|+.||++||||+.|+++|++|||+|++++++
T Consensus 21 ~~~f~~~yg~~~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~ 100 (178)
T 2ec4_A 21 TAEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTK 100 (178)
T ss_dssp HHHHHHHHCSCCCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCS
T ss_pred HHHHHHHhCCCCCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCC
Confidence 456889999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred hh-------------HHHHHHH---cCCCCCcEEEEEeCCCC--eeeEEEeCCCChHHHHHHHHhhhhcCC
Q 013379 226 SE-------------GKKVCTY---YKLDSIPVVLVVDPITG--QKMRSWCGMVQPESLLEDLVPFMDGGP 278 (444)
Q Consensus 226 ~e-------------g~~~~~~---y~~~~~P~l~ii~p~tg--~~v~~~~G~~~~~~~l~~L~~~l~~~~ 278 (444)
+| |+.+++. |++..||+++||+++.+ +++.++.|.+++++|++.|..+++.+.
T Consensus 101 ~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~e~~~ 171 (178)
T 2ec4_A 101 DSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIFT 171 (178)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 99 5667765 89999999999998744 578999999999999999999999774
No 2
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=99.94 E-value=2.6e-26 Score=203.97 Aligned_cols=132 Identities=43% Similarity=0.862 Sum_probs=125.2
Q ss_pred CcchHHHHHhhcCCCccCcccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCC
Q 013379 146 ADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT 225 (444)
Q Consensus 146 ~~~~~~~l~~~f~pp~~~~~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s 225 (444)
++++..+|+.+|+||+.++|.++|++|++.|++++||||||+++++|+.|+.|+++||+|+.|+++|++|||+|++++++
T Consensus 8 ~~~~~~~l~~lf~~p~~~~~~~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~ 87 (153)
T 2dlx_A 8 IDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDS 87 (153)
T ss_dssp CCCCCCCCCCTTSCCTTTSCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSS
T ss_pred CCchhhHHHHhhCCchhhhcccCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCC
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcCC
Q 013379 226 SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGP 278 (444)
Q Consensus 226 ~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~~ 278 (444)
.++..+++.|++..+|+++||+|.+|+.+..+.| +++++|+..|..+++.+.
T Consensus 88 ~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~~~g-~~~~~fl~~L~~~l~~~~ 139 (153)
T 2dlx_A 88 EEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLGEHG 139 (153)
T ss_dssp HHHHHHHHHHTCCSSSEEEEECTTTCCCCEEESS-CCHHHHHHHHHHHHHHTC
T ss_pred HhHHHHHHHcCCCCCCEEEEEeCCCCcEeeecCC-CCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988988888877 899999999999998775
No 3
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=99.85 E-value=3.3e-21 Score=161.17 Aligned_cols=87 Identities=26% Similarity=0.478 Sum_probs=77.2
Q ss_pred CCCCCCCCCCCCCCCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChh
Q 013379 351 AYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFE 430 (444)
Q Consensus 351 ~~~~lp~EP~~~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~ 430 (444)
+...+|+||..+.+++|+||||||||+|++|||+.+++|++||+||+++ ++....|.|+++||||. +..+.++||+
T Consensus 8 ~~~~lp~EP~~~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~--~~~~~~f~L~t~fPrk~--l~~d~~~TL~ 83 (109)
T 2cr5_A 8 EVPDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV--GYHKSLYRLSTSFPRRA--LEVEGGSSLE 83 (109)
T ss_dssp CCCCCCCCCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH--TCCTTTEEEECSSSCCB--CCCCSSCBHH
T ss_pred ccccCCCCCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc--CCCCCCeEEEeCCCCcC--CCCCCCCCHH
Confidence 3457999999888899999999999999999999999999999999986 55678999999999997 5557899999
Q ss_pred hcCCCCceEEE
Q 013379 431 DSGLANAMISV 441 (444)
Q Consensus 431 e~gL~~~~v~v 441 (444)
|+||.++++|+
T Consensus 84 e~gL~p~a~L~ 94 (109)
T 2cr5_A 84 DIGITVDTVLN 94 (109)
T ss_dssp HHTCSSCEEEE
T ss_pred HcCCCCCeEEE
Confidence 99999866544
No 4
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=99.76 E-value=3.5e-18 Score=142.66 Aligned_cols=84 Identities=25% Similarity=0.360 Sum_probs=70.7
Q ss_pred CCCCCCCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-c
Q 013379 359 PKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-A 437 (444)
Q Consensus 359 P~~~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~ 437 (444)
|..+.++.|+||||||||+|++|||+.+++|++||+||+++. +....+|.|+++||||.+. ..|.++||+|+||.| +
T Consensus 6 p~~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~-~~~~~~f~L~t~fPrk~l~-~~d~~~TL~elgL~psa 83 (109)
T 2dzk_A 6 SGRDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTV-GNTYGNFSLATMFPRREFT-REDYKRRLLDLELAPSA 83 (109)
T ss_dssp CCCCCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHH-TTSSCSCEEECSSSCCBCC-TTTTTSBTGGGTCSSEE
T ss_pred CCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcc-CCCCCceEEEcCCCCcCCc-ccccCCCHHHCCCCCce
Confidence 344556799999999999999999999999999999999974 4456899999999999732 136799999999997 5
Q ss_pred eEEEEeC
Q 013379 438 MISVTWE 444 (444)
Q Consensus 438 ~v~v~~~ 444 (444)
+|+|+|.
T Consensus 84 ~L~v~~~ 90 (109)
T 2dzk_A 84 SVVLLPA 90 (109)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
Confidence 5777773
No 5
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=99.75 E-value=3.8e-18 Score=135.94 Aligned_cols=76 Identities=17% Similarity=0.389 Sum_probs=66.1
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCceE-EEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMI-SVT 442 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v-~v~ 442 (444)
+++|+||||||||+|++|||+.+++|++||+||.+. ++...+|.|+++||||.+. ..|.++||+|+||.|+++ +|+
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~--~~~~~~f~L~t~fPrk~l~-~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASK--GFPWDEYKLLSTFPRRDVT-QLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHT--TCCTTTEEEECSSSCCBGG-GSCTTSBTTTTTCCSEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHc--CCCCCCeEEEeCCCCCCCc-CCCCCCCHHHCCCCCCCEEEEE
Confidence 579999999999999999999999999999999985 5578899999999999732 357899999999997654 443
No 6
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=99.75 E-value=2e-18 Score=147.99 Aligned_cols=78 Identities=22% Similarity=0.341 Sum_probs=71.1
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCceEEEEe
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTW 443 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v~v~~ 443 (444)
.+.|+||||||||+|++|||+.+++|++||+||.++.+++....|.|+++||||. +. +.++||+|+||.|++|+++|
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~--l~-d~~~TL~eagL~psavl~k~ 126 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKE--LA-DENQTLKEANLLNAVIVQRL 126 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEE--CC-STTCBHHHHTCSSCEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCC--CC-CCCCcHHHCCCcCceEEEEe
Confidence 4689999999999999999999999999999999986655678999999999986 53 67999999999999999999
Q ss_pred C
Q 013379 444 E 444 (444)
Q Consensus 444 ~ 444 (444)
.
T Consensus 127 ~ 127 (127)
T 1s3s_G 127 T 127 (127)
T ss_dssp C
T ss_pred C
Confidence 5
No 7
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=99.70 E-value=3.6e-17 Score=139.43 Aligned_cols=81 Identities=22% Similarity=0.280 Sum_probs=69.7
Q ss_pred CCCCCCCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCC-CCcCCChhhcCCCC-
Q 013379 359 PKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLD-YDSKLTFEDSGLAN- 436 (444)
Q Consensus 359 P~~~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~-~~~~~Tl~e~gL~~- 436 (444)
|..+..++|+||||||||+|++|||+.+++|++||+||.++ ++....|.|+++||||. +. .|.++||+|+||.|
T Consensus 36 ~~d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~--~~~~~~F~L~t~fPrk~--l~~~d~~~TL~e~gL~ps 111 (124)
T 1wj4_A 36 GIDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK--GYPNERFELLTNFPRRK--LSHLDYDITLQEAGLCPQ 111 (124)
T ss_dssp CCCCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH--HCCTTTEEEECSSSCCE--ETSSCSSSCTTTTTCCSS
T ss_pred ccCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc--CCCCCCeEEecCCCCcC--CccCCCCCCHHHCCCCCc
Confidence 33445689999999999999999999999999999999986 55678999999999997 43 47899999999996
Q ss_pred ceEEEEe
Q 013379 437 AMISVTW 443 (444)
Q Consensus 437 ~~v~v~~ 443 (444)
++|+|++
T Consensus 112 a~Liv~~ 118 (124)
T 1wj4_A 112 ETVFVQE 118 (124)
T ss_dssp BCCEEEE
T ss_pred eEEEEEE
Confidence 5667664
No 8
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=92.32 Aligned_cols=49 Identities=24% Similarity=0.401 Sum_probs=43.2
Q ss_pred ccCCcchHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013379 3 SVLSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (444)
Q Consensus 3 ~~l~~~~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (444)
..|+..+ +++|.+||+| ||+++++|++||++++||||.||++||+.++.
T Consensus 9 ~~~s~~~-~e~i~qF~~i-Tg~~~~~A~~~Le~~~WnLe~Av~~ff~~~~~ 57 (62)
T 2dal_A 9 SAASSAL-KGLIQQFTTI-TGASESVGKHMLEACNNNLEMAVTMFLDGGGS 57 (62)
T ss_dssp CSSCHHH-HHHHHHHHHH-TCCCHHHHHHHHHTTTSCHHHHHHHHHHSCCC
T ss_pred hhcCccH-HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence 4566666 5699999999 99999999999999999999999999997654
No 9
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=99.21 E-value=8.7e-12 Score=87.30 Aligned_cols=41 Identities=27% Similarity=0.598 Sum_probs=38.4
Q ss_pred HHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013379 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (444)
Q Consensus 10 ~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (444)
++++|.+|++| ||+++++|++||++++|||+.||+.||+.+
T Consensus 5 ~~~~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 5 RQDALREFVAV-TGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHHH-TCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 46699999999 899999999999999999999999999864
No 10
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=99.21 E-value=3.6e-12 Score=87.77 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=35.9
Q ss_pred chHHHHHHhhcccccCCC-HHHHHHHHHHcCCCHHHHHHHHhc
Q 013379 8 NDKQSMVSSFLEIAVGQT-AETAVQFLQATSWKLDEAIQLFYV 49 (444)
Q Consensus 8 ~~~~~~i~~F~~itt~~~-~~~A~~~L~~~~w~le~Av~~~~~ 49 (444)
.+++++|++|++| ||++ ++.|++||+++||||+.||+.||-
T Consensus 3 ~d~de~ia~F~~i-TG~~d~~~A~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 3 MDREMILADFQAC-TGIENIDEAITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp CCHHHHHHHHHHH-HCCCCHHHHHHHHHHTTTCHHHHHTTC--
T ss_pred ccHHHHHHHHHHH-HCCCCHHHHHHHHHHcCCcHHHHHHHHcC
Confidence 4578899999999 8876 599999999999999999999984
No 11
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=1.7e-11 Score=92.60 Aligned_cols=49 Identities=16% Similarity=0.356 Sum_probs=43.3
Q ss_pred ccCCcchHHHHHHhhcccccC-CCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013379 3 SVLSANDKQSMVSSFLEIAVG-QTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (444)
Q Consensus 3 ~~l~~~~~~~~i~~F~~itt~-~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (444)
..|+..+ +++|.+|++| || +++++|++||+++|||||.||+.||+..++
T Consensus 12 ~~Ls~~~-~e~i~qF~~I-Tg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~~ 61 (67)
T 2dam_A 12 RDLTQEQ-TEKLLQFQDL-TGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEG 61 (67)
T ss_dssp CCCCHHH-HHHHHHHHHH-HCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSCS
T ss_pred hhcChhH-HHHHHHHHHH-hCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 4677776 6699999999 78 899999999999999999999999997553
No 12
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=99.17 E-value=1.2e-10 Score=103.97 Aligned_cols=113 Identities=11% Similarity=0.202 Sum_probs=99.5
Q ss_pred cccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhH---------------
Q 013379 164 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------- 228 (444)
Q Consensus 164 ~~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg--------------- 228 (444)
....+|++++..|+.++|++||+++.++|..|..+...+|.++.+.+.++++|++..++.+....
T Consensus 31 ~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~ 110 (172)
T 3f9u_A 31 AKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERT 110 (172)
T ss_dssp CCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEE
T ss_pred cchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhh
Confidence 34578999999999999999999999999999999999999999999999999999999875431
Q ss_pred ---------HHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCC-hHHHHHHHHhhhhcC
Q 013379 229 ---------KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ-PESLLEDLVPFMDGG 277 (444)
Q Consensus 229 ---------~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~-~~~~l~~L~~~l~~~ 277 (444)
...+..|++..+|+++||++ +|+++.++.|..+ +++|+..|.+.++.+
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Pt~~lid~-~G~~~~~~~G~~~~~~~l~~~l~~~l~~~ 168 (172)
T 3f9u_A 111 LRTVGDKWSYLQRVKFGANAQPFYVLIDN-EGNPLNKSYAYDEDISKYINFLQTGLENY 168 (172)
T ss_dssp EEEHHHHHHHHHHHHHSCCCSSEEEEECT-TSCBSSCCBCSCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHcCCCCcceEEEECC-CCCEEeeccCCCCCHHHHHHHHHHHHHHh
Confidence 11267899999999999997 7998888889988 999999999888754
No 13
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=4.6e-10 Score=95.00 Aligned_cols=111 Identities=20% Similarity=0.285 Sum_probs=100.8
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
...+|.+++..+..++|++||++.+++|..|..+...++.++.+.++++.+++++.++.+..+...++..|++..+|+++
T Consensus 12 ~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~ 91 (130)
T 2kuc_A 12 RELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLL 91 (130)
T ss_dssp BCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEEE
T ss_pred ccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEEE
Confidence 56899999999999999999999999999999999888888999999999999999888876778899999999999999
Q ss_pred EEeCCCCeeeEEEeCCCChHHHHHHHHhhhhc
Q 013379 245 VVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
|+++ .|+++.++.|..+.++|...|...+..
T Consensus 92 ~~d~-~G~~~~~~~G~~~~~~l~~~l~~~~~~ 122 (130)
T 2kuc_A 92 FINS-SGEVVYRLVGAEDAPELLKKVKLGVES 122 (130)
T ss_dssp EECT-TSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred EECC-CCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence 9986 789888999999999999988887654
No 14
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=99.08 E-value=2e-09 Score=94.66 Aligned_cols=107 Identities=10% Similarity=0.163 Sum_probs=96.6
Q ss_pred CcHHHHHHHHHHcCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCCh---------hHHHHHHHcC
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS---------EGKKVCTYYK 236 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~---------eg~~~~~~y~ 236 (444)
.++.+++..+..++|++||++. .++|..|..+...++.++.+.++.+.+|++..++.+.. ....++..|+
T Consensus 34 ~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~ 113 (154)
T 2ju5_A 34 ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYK 113 (154)
T ss_dssp ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcC
Confidence 7899999999999999999999 89999999999999999999999888999999988763 3567899999
Q ss_pred CCCCcEEEEEeCCCCeeeEEEeCCC--ChHHHHHHHHhhhh
Q 013379 237 LDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPFMD 275 (444)
Q Consensus 237 ~~~~P~l~ii~p~tg~~v~~~~G~~--~~~~~l~~L~~~l~ 275 (444)
+..+|+++||++ +|+++.++ |.. +.++|+..|...+.
T Consensus 114 v~~~Pt~~~~d~-~G~~~~~~-G~~~~~~~~l~~~l~~~l~ 152 (154)
T 2ju5_A 114 VTGFPELVFIDA-EGKQLARM-GFEPGGGAAYVSKVKSALK 152 (154)
T ss_dssp CCSSSEEEEECT-TCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEcC-CCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence 999999999996 79999999 988 89999998887764
No 15
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=99.08 E-value=3.2e-10 Score=99.93 Aligned_cols=111 Identities=17% Similarity=0.161 Sum_probs=93.7
Q ss_pred CcccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013379 163 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV 242 (444)
Q Consensus 163 ~~~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~ 242 (444)
+-+..+|++|++.|++++|++||+++.++|..|..|...++.++.+.++++.+||...++.+..+ .+..|++..+|+
T Consensus 27 i~W~~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~---~~~~~~v~~~PT 103 (151)
T 3ph9_A 27 ITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTD---KNLSPDGQYVPR 103 (151)
T ss_dssp SCCCSSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSC---GGGCTTCCCSSE
T ss_pred CcchhCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchh---hHhhcCCCCCCE
Confidence 34668999999999999999999999999999999999999999999999889999987643332 356788999999
Q ss_pred EEEEeCCCCeeeEEEeCC-------C---ChHHHHHHHHhhhhcC
Q 013379 243 VLVVDPITGQKMRSWCGM-------V---QPESLLEDLVPFMDGG 277 (444)
Q Consensus 243 l~ii~p~tg~~v~~~~G~-------~---~~~~~l~~L~~~l~~~ 277 (444)
++|+++ .|+++.++.|. . +.+.++..+..++.++
T Consensus 104 ~~f~~~-~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~~ 147 (151)
T 3ph9_A 104 IMFVDP-SLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRLI 147 (151)
T ss_dssp EEEECT-TSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSCC
T ss_pred EEEECC-CCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHHH
Confidence 999997 69888888897 3 4466777777777655
No 16
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=2.1e-10 Score=86.22 Aligned_cols=40 Identities=30% Similarity=0.610 Sum_probs=37.9
Q ss_pred HHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013379 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (444)
Q Consensus 12 ~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (444)
++|.+|++| ||+++++|++||++++||||.||+.||+.++
T Consensus 19 ~~i~qF~~i-Tg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 19 VMINQFVLA-AGCAADQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp HHHHHHHHH-HCCCHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 799999999 9999999999999999999999999998654
No 17
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=98.59 E-value=2.6e-11 Score=102.92 Aligned_cols=109 Identities=19% Similarity=0.282 Sum_probs=99.8
Q ss_pred HHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCC
Q 013379 170 EKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI 249 (444)
Q Consensus 170 ~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~ 249 (444)
.+++..|..++|++||++++++|..|..+...++.++.+.+.++.+++++.++.+..+...++..|++..+|+++|+++.
T Consensus 9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~ 88 (130)
T 2lst_A 9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPK 88 (130)
Confidence 88999999999999999999999999999999999999999999899999999887788889999999999999999988
Q ss_pred CCee--eEEEeCCCChHHHHHHHHhhhhcCC
Q 013379 250 TGQK--MRSWCGMVQPESLLEDLVPFMDGGP 278 (444)
Q Consensus 250 tg~~--v~~~~G~~~~~~~l~~L~~~l~~~~ 278 (444)
+|++ +.++.|..+++.|...|...+....
T Consensus 89 ~G~~~~~~~~~G~~~~~~l~~~l~~~~~~~~ 119 (130)
T 2lst_A 89 AGAWEEVGRLFGSRPRAEFLKELRQVCVKGG 119 (130)
Confidence 8988 8889999999999988888876553
No 18
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=98.99 E-value=2e-09 Score=96.96 Aligned_cols=110 Identities=14% Similarity=0.178 Sum_probs=87.9
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHc--------C
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYY--------K 236 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y--------~ 236 (444)
+.-.+++|+..|++++|++||++..++|..|+.|...+|.+++|.++++++||+..+|.+.. ..++..| +
T Consensus 24 W~~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~--~~l~~~y~~~~q~~~g 101 (173)
T 3ira_A 24 WYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREER--PDIDNIYMTVCQIILG 101 (173)
T ss_dssp CBCSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTC--HHHHHHHHHHHHHHHS
T ss_pred CCCcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCccc--CcHHHHHHHHHHHHcC
Confidence 55667999999999999999999999999999999999999999999999999999887642 3344444 8
Q ss_pred CCCCcEEEEEeCCCCeeeEEEe-----CCCChHHHHHHHHhhhhcC
Q 013379 237 LDSIPVVLVVDPITGQKMRSWC-----GMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 237 ~~~~P~l~ii~p~tg~~v~~~~-----G~~~~~~~l~~L~~~l~~~ 277 (444)
+..+|+++|++| .|+.+.... |..+...|+..|..+.+.+
T Consensus 102 v~g~Pt~v~l~~-dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~~~ 146 (173)
T 3ira_A 102 RGGWPLNIIMTP-GKKPFFAGTYIPKNTRFNQIGMLELVPRIKEIW 146 (173)
T ss_dssp CCCSSEEEEECT-TSCEEEEESSCCSSCBTTBCCHHHHHHHHHHHH
T ss_pred CCCCcceeeECC-CCCceeeeeeCCCCcCCCCCCHHHHHHHHHHHH
Confidence 999999999998 588776532 1223455766666665543
No 19
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=98.89 E-value=1.1e-08 Score=86.78 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=89.0
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCC-hhHHHHHHHcCC---CCCcE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SEGKKVCTYYKL---DSIPV 242 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s-~eg~~~~~~y~~---~~~P~ 242 (444)
.+|++++..|+.++|++||+++.++|..|..+.. +|.++.+...++.++.+..++.+. .+...++..|++ ..+|+
T Consensus 16 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~-~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt 94 (133)
T 3fk8_A 16 TQVKKALAAGKRTHKPTLLVFGANWCTDCRALDK-SLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPA 94 (133)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSE
T ss_pred hHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH-HhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccce
Confidence 4789999999999999999999999999999976 688889999998899999888843 345678999999 99999
Q ss_pred EEEEeCCCCeeeEEEeC-------CCChHHHHHHHHhh
Q 013379 243 VLVVDPITGQKMRSWCG-------MVQPESLLEDLVPF 273 (444)
Q Consensus 243 l~ii~p~tg~~v~~~~G-------~~~~~~~l~~L~~~ 273 (444)
++++++ +|+++.+..| ..+.+++...|...
T Consensus 95 ~~~~d~-~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l 131 (133)
T 3fk8_A 95 VVVVNS-DGKVRYTTKGGELANARKMSDQGIYDFFAKI 131 (133)
T ss_dssp EEEECT-TSCEEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred EEEECC-CCCEEEEecCCcccccccCCHHHHHHHHHHh
Confidence 999986 6999988888 56666666655543
No 20
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=98.84 E-value=2.5e-08 Score=85.22 Aligned_cols=106 Identities=14% Similarity=0.219 Sum_probs=87.7
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCC--hhHHHHHHHcCCCCCcEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--SEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s--~eg~~~~~~y~~~~~P~l 243 (444)
...|..++..+ .+|++||++.+++|..|..+...++.++.+.+.++ ++.++.++.+. .+...++..|++..+|++
T Consensus 19 ~~~~~~~l~~~--~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-~~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~ 95 (134)
T 2fwh_A 19 VDELNQALVEA--KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHLNVLGLPTI 95 (134)
T ss_dssp HHHHHHHHHHH--TTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTTCCSSSEE
T ss_pred HHHHHHHHHHh--cCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-CcEEEEEeCCCCcchHHHHHHHcCCCCCCEE
Confidence 34566666544 38999999999999999999999999999988887 48888888865 566789999999999999
Q ss_pred EEEeCCCCeee--EEEeCCCChHHHHHHHHhhhh
Q 013379 244 LVVDPITGQKM--RSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 244 ~ii~p~tg~~v--~~~~G~~~~~~~l~~L~~~l~ 275 (444)
+|+++ .|+++ .++.|..+.++|...|..+--
T Consensus 96 ~~~d~-~G~~v~~~~~~G~~~~~~l~~~l~~~~~ 128 (134)
T 2fwh_A 96 LFFDG-QGQEHPQARVTGFMDAETFSAHLRDRQP 128 (134)
T ss_dssp EEECT-TSCBCGGGCBCSCCCHHHHHHHHHHC--
T ss_pred EEECC-CCCEeeeeeeeeccCHHHHHHHHHhcCc
Confidence 99986 68887 688999999999888876543
No 21
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=98.51 E-value=1.2e-06 Score=71.38 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=80.1
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii 246 (444)
.+|++++..+++.+|+++|++++++|..|..+...+ ..+.+....++.++.++.+. ...++..|++..+|+++++
T Consensus 11 ~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~ 85 (112)
T 1ep7_A 11 AAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLF---ETLSNDYAGKVIFLKVDVDA--VAAVAEAAGITAMPTFHVY 85 (112)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTT--THHHHHHHTCCBSSEEEEE
T ss_pred HHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHH---HHHHHHcCCCeEEEEEECCc--hHHHHHHcCCCcccEEEEE
Confidence 578889988888899999999999999999986443 33444444578888877754 4568899999999998777
Q ss_pred eCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 247 DPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 247 ~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
. +|+.+.++.|. +++++...|.+.+
T Consensus 86 ~--~G~~~~~~~G~-~~~~l~~~l~~~l 110 (112)
T 1ep7_A 86 K--DGVKADDLVGA-SQDKLKALVAKHA 110 (112)
T ss_dssp E--TTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred E--CCeEEEEEcCC-CHHHHHHHHHHHh
Confidence 3 79988899998 8888888777665
No 22
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=98.48 E-value=9.6e-07 Score=73.95 Aligned_cols=98 Identities=10% Similarity=0.137 Sum_probs=79.7
Q ss_pred HHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeE
Q 013379 176 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR 255 (444)
Q Consensus 176 A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~ 255 (444)
+..++|++||++.+++|..|..+...+ ..+.+.++.++.++.++.+..+...++..|++..+|+++|+++ +|+++.
T Consensus 22 ~~~~~k~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~-~G~~~~ 97 (126)
T 2l57_A 22 EAKEGIPTIIMFKTDTCPYCVEMQKEL---SYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDK-EGNKFY 97 (126)
T ss_dssp TCCSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECT-TCCEEE
T ss_pred HHhCCCcEEEEEECCCCccHHHHHHHH---HHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECC-CCCEEE
Confidence 345789999999999999999986543 4455555567999988854556678899999999999999996 688888
Q ss_pred EEeCCCChHHHHHHHHhhhhcC
Q 013379 256 SWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 256 ~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
++.|..+.++|...|...+...
T Consensus 98 ~~~G~~~~~~l~~~l~~~~~~~ 119 (126)
T 2l57_A 98 VHQGLMRKNNIETILNSLGVKE 119 (126)
T ss_dssp EEESCCCHHHHHHHHHHHCCCC
T ss_pred EecCCCCHHHHHHHHHHHhccc
Confidence 9999999999988888776543
No 23
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=98.45 E-value=2.5e-06 Score=71.71 Aligned_cols=98 Identities=12% Similarity=0.265 Sum_probs=78.8
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
..+|++++..|+.++|+++|++.+++|..|..+.. .+.++.++ ++.+..++.+. ...++..|++..+|++
T Consensus 24 ~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~------~l~~l~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~ 95 (124)
T 1xfl_A 24 VETWNEQLQKANESKTLVVVDFTASWCGPCRFIAP------FFADLAKKLPNVLFLKVDTDE--LKSVASDWAIQAMPTF 95 (124)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHH------HHHHHHHHCSSEEEEEEETTT--SHHHHHHTTCCSSSEE
T ss_pred HHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHH------HHHHHHHHCCCcEEEEEECcc--CHHHHHHcCCCccCEE
Confidence 35789999999999999999999999999999864 33444432 68888777754 4578899999999998
Q ss_pred EEEeCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 244 LVVDPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 244 ~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
+|+. .|+++.++.| .+++++...|.+.+
T Consensus 96 ~~~~--~G~~~~~~~G-~~~~~l~~~l~~~l 123 (124)
T 1xfl_A 96 MFLK--EGKILDKVVG-AKKDELQSTIAKHL 123 (124)
T ss_dssp EEEE--TTEEEEEEES-CCHHHHHHHHHHHC
T ss_pred EEEE--CCEEEEEEeC-CCHHHHHHHHHHhc
Confidence 8873 7999999999 48888887776653
No 24
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=98.42 E-value=2.1e-06 Score=69.31 Aligned_cols=98 Identities=20% Similarity=0.346 Sum_probs=76.6
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~i 245 (444)
..+|++++ .++|+++|++++++|..|..+...+ ..+.+....++.+..++.+ +...++..|++..+|++++
T Consensus 11 ~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~i~~~Pt~~~ 81 (109)
T 3tco_A 11 EENFDEVI----RNNKLVLVDCWAEWCAPCHLYEPIY---KKVAEKYKGKAVFGRLNVD--ENQKIADKYSVLNIPTTLI 81 (109)
T ss_dssp TTTHHHHH----HHSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETT--TCHHHHHHTTCCSSSEEEE
T ss_pred HHHHHHHH----hcCCeEEEEEECCCCHHHHhhhHHH---HHHHHHhCCCceEEEEccc--cCHHHHHhcCcccCCEEEE
Confidence 45677666 3489999999999999999986322 3334444457888877765 4457899999999999999
Q ss_pred EeCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 246 VDPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 246 i~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
+ .+|+.+.++.|..+.++|...|...+
T Consensus 82 ~--~~g~~~~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 82 F--VNGQLVDSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp E--ETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred E--cCCcEEEeeeccCCHHHHHHHHHHHh
Confidence 9 37999999999999999988887764
No 25
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=98.42 E-value=3.4e-06 Score=69.14 Aligned_cols=101 Identities=19% Similarity=0.223 Sum_probs=81.0
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
-..+|++++ .+|+++|++++++|..|..+...+ +.+.+.+..++.++.++.+.. ..++..|++..+|+++
T Consensus 7 ~~~~~~~~~-----~~~~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~ 76 (112)
T 2voc_A 7 TDQSFSAET-----SEGVVLADFWAPWCGPSKMIAPVL---EELDQEMGDKLKIVKIDVDEN--QETAGKYGVMSIPTLL 76 (112)
T ss_dssp CTTTHHHHH-----SSSEEEEEEECTTBGGGGGHHHHH---HHHHHHHTTTCEEEEEETTTC--CSHHHHTTCCSBSEEE
T ss_pred cHHHHHHHh-----CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCcEEEEEECCCC--HHHHHHcCCCcccEEE
Confidence 345677777 789999999999999999986544 455556666788888887653 3578899999999999
Q ss_pred EEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 245 VVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
++ .+|+++.++.|..+.++|...|...+...
T Consensus 77 ~~--~~G~~~~~~~G~~~~~~l~~~l~~~~~~~ 107 (112)
T 2voc_A 77 VL--KDGEVVETSVGFKPKEALQELVNKHLLEH 107 (112)
T ss_dssp EE--ETTEEEEEEESCCCHHHHHHHHHTTSCSC
T ss_pred EE--eCCEEEEEEeCCCCHHHHHHHHHHHHHhh
Confidence 99 37999999999999998888887766543
No 26
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=98.39 E-value=3.6e-06 Score=69.11 Aligned_cols=99 Identities=17% Similarity=0.318 Sum_probs=80.5
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
..+|++++..|+..+|+++|++++++|..|..+.. .+.++.+. ++.+..++.+. ...++..|++..+|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~ 85 (118)
T 2vm1_A 14 KQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAP------VFAEYAKKFPGAIFLKVDVDE--LKDVAEAYNVEAMPTF 85 (118)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETTT--SHHHHHHTTCCSBSEE
T ss_pred HHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhH------HHHHHHHHCCCcEEEEEEccc--CHHHHHHcCCCcCcEE
Confidence 46899999999999999999999999999999853 34444443 67888777654 4568899999999999
Q ss_pred EEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 244 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 244 ~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
+++. +|+.+.++.| .+++++...|.+.+.
T Consensus 86 ~~~~--~g~~~~~~~g-~~~~~l~~~l~~~~~ 114 (118)
T 2vm1_A 86 LFIK--DGEKVDSVVG-GRKDDIHTKIVALMG 114 (118)
T ss_dssp EEEE--TTEEEEEEES-CCHHHHHHHHHHHHC
T ss_pred EEEe--CCeEEEEecC-CCHHHHHHHHHHHhc
Confidence 8883 7998889999 588888888887765
No 27
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=98.39 E-value=3e-06 Score=70.21 Aligned_cols=100 Identities=25% Similarity=0.315 Sum_probs=77.1
Q ss_pred ccCcccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCC
Q 013379 161 FHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLD 238 (444)
Q Consensus 161 ~~~~~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~ 238 (444)
....-..+|++++..+ .+|++||+++.++|..|..+.. .+.++.+. ++.|..++.+. ...++..|++.
T Consensus 14 ~~~~t~~~f~~~l~~~--~~k~vlv~F~a~wC~~C~~~~p------~l~~l~~~~~~v~~~~vd~d~--~~~l~~~~~v~ 83 (116)
T 3qfa_C 14 KQIESKTAFQEALDAA--GDKLVVVDFSATWCGPSKMIKP------FFHSLSEKYSNVIFLEVDVDD--CQDVASECEVK 83 (116)
T ss_dssp BCCCCHHHHHHHHHHH--TTSCEEEEEECTTCHHHHHHHH------HHHHHHTTCTTSEEEEEETTT--THHHHHHTTCC
T ss_pred cCCCCHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHH------HHHHHHHHCCCCEEEEEECCC--CHHHHHHcCCc
Confidence 3334456777777544 7899999999999999999853 44444442 37888777754 46789999999
Q ss_pred CCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhh
Q 013379 239 SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 239 ~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~ 273 (444)
.+|+++|+ ..|+.+.++.|. +++.|...|.+.
T Consensus 84 ~~Pt~~~~--~~G~~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 84 SMPTFQFF--KKGQKVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp SSSEEEEE--SSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred cccEEEEE--eCCeEEEEEcCC-CHHHHHHHHHHh
Confidence 99999988 479999999998 888888877654
No 28
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=98.37 E-value=5.3e-06 Score=66.72 Aligned_cols=98 Identities=16% Similarity=0.239 Sum_probs=76.8
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii 246 (444)
.+|++++ +.+|+++|++++++|..|..+...+ ..+.+.+..++.++.++.+. ...++..|++..+|+++++
T Consensus 9 ~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~ 79 (109)
T 2yzu_A 9 QNFDETL----GQHPLVLVDFWAEWCAPCRMIAPIL---EEIAKEYEGKLLVAKLDVDE--NPKTAMRYRVMSIPTVILF 79 (109)
T ss_dssp TTHHHHH----HHCSEEEEEEECTTCHHHHHHHHHH---HHHHHHTBTTBEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred hHHHHHh----cCCCeEEEEEECCCCHHHHHhhHHH---HHHHHHhhCceEEEEEECCC--CHhHHHhCCCCcCCEEEEE
Confidence 4555443 5689999999999999999986543 44555555678888877765 3468899999999999999
Q ss_pred eCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 247 DPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 247 ~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
.+|+.+.++.|..+.+.+...|...+.
T Consensus 80 --~~g~~~~~~~g~~~~~~l~~~l~~~l~ 106 (109)
T 2yzu_A 80 --KDGQPVEVLVGAQPKRNYQAKIEKHLP 106 (109)
T ss_dssp --ETTEEEEEEESCCCHHHHHHHHHTTC-
T ss_pred --eCCcEeeeEeCCCCHHHHHHHHHHHhh
Confidence 379988899999999888888876654
No 29
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=98.36 E-value=6.9e-06 Score=66.56 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=74.7
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEE
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW 257 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~ 257 (444)
..+|+++|++++++|..|..+...+ +.+.+....++.+..++.+. ...++..|++..+|+++++. .|+.+.++
T Consensus 20 ~~~~~vlv~f~a~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~--~g~~~~~~ 92 (111)
T 3gnj_A 20 DEGKACLVMFSRKNCHVCQKVTPVL---EELRLNYEESFGFYYVDVEE--EKTLFQRFSLKGVPQILYFK--DGEYKGKM 92 (111)
T ss_dssp TSCCCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTT--CHHHHHHTTCCSSCEEEEEE--TTEEEEEE
T ss_pred hcCCEEEEEEeCCCChhHHHHHHHH---HHHHHHcCCceEEEEEECCc--ChhHHHhcCCCcCCEEEEEE--CCEEEEEE
Confidence 6789999999999999999996543 44555555678888777765 45688999999999999994 79989899
Q ss_pred eCCCChHHHHHHHHhhhh
Q 013379 258 CGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 258 ~G~~~~~~~l~~L~~~l~ 275 (444)
.|..+.+.+...|.+.++
T Consensus 93 ~g~~~~~~l~~~l~~~l~ 110 (111)
T 3gnj_A 93 AGDVEDDEVEQMIADVLE 110 (111)
T ss_dssp ESSCCHHHHHHHHHHHHH
T ss_pred eccCCHHHHHHHHHHHhc
Confidence 999999999998887764
No 30
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=98.35 E-value=5e-06 Score=68.92 Aligned_cols=105 Identities=12% Similarity=0.222 Sum_probs=80.5
Q ss_pred cCcccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCc
Q 013379 162 HLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIP 241 (444)
Q Consensus 162 ~~~~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P 241 (444)
.+.-..+|++++..|+..+|+++|++++++|..|..+... | ..+.+-.. ++.+..++.+. ...++..|++..+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~-~~~~~~vd~~~--~~~~~~~~~v~~~P 89 (122)
T 2vlu_A 16 SVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPV-F--ADLAKKFP-NAVFLKVDVDE--LKPIAEQFSVEAMP 89 (122)
T ss_dssp EECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHH-H--HHHHHHCT-TSEEEEEETTT--CHHHHHHTTCCSSS
T ss_pred eccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHCC-CcEEEEEECCC--CHHHHHHcCCCccc
Confidence 3344568999999999999999999999999999998532 2 12222222 37787777654 45688999999999
Q ss_pred EEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 242 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 242 ~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
+++++. +|+.+.++.|.. .++|...|...+.
T Consensus 90 t~~~~~--~G~~~~~~~G~~-~~~l~~~l~~~l~ 120 (122)
T 2vlu_A 90 TFLFMK--EGDVKDRVVGAI-KEELTAKVGLHAA 120 (122)
T ss_dssp EEEEEE--TTEEEEEEESSC-HHHHHHHHHHHHS
T ss_pred EEEEEe--CCEEEEEEeCcC-HHHHHHHHHHHhc
Confidence 988773 799999999988 8888888877654
No 31
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=98.35 E-value=3.8e-06 Score=67.41 Aligned_cols=97 Identities=20% Similarity=0.225 Sum_probs=78.2
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
-..+|++++ .+|+++|++++++|..|..+...+ ..+.+.+.+++.+..++.+. ...++..|++..+|+++
T Consensus 9 ~~~~~~~~~-----~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~ 78 (106)
T 3die_A 9 TDADFDSKV-----ESGVQLVDFWATACGPCKMIAPVL---EELAADYEGKADILKLDVDE--NPSTAAKYEVMSIPTLI 78 (106)
T ss_dssp CTTTHHHHS-----CSSEEEEEEECSBCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSBSEEE
T ss_pred CHHHHHHHh-----cCCcEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEECCc--CHHHHHhCCCcccCEEE
Confidence 456777777 789999999999999999996544 55555556668888777654 45688999999999999
Q ss_pred EEeCCCCeeeEEEeCCCChHHHHHHHHhh
Q 013379 245 VVDPITGQKMRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~~~~~~~l~~L~~~ 273 (444)
++. .|+.+.++.|..+.+++...|.+.
T Consensus 79 ~~~--~G~~~~~~~g~~~~~~l~~~l~~~ 105 (106)
T 3die_A 79 VFK--DGQPVDKVVGFQPKENLAEVLDKH 105 (106)
T ss_dssp EEE--TTEEEEEEESCCCHHHHHHHHHTT
T ss_pred EEe--CCeEEEEEeCCCCHHHHHHHHHHh
Confidence 995 799999999999999888887654
No 32
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=98.35 E-value=4.7e-06 Score=69.16 Aligned_cols=95 Identities=15% Similarity=0.235 Sum_probs=74.1
Q ss_pred HHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCe
Q 013379 173 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 252 (444)
Q Consensus 173 ~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~ 252 (444)
.....+.+|++||++.+++|..|+.+...+ ..+.+-+..++.+..++.+. ...++..|++..+|+++++ .+|+
T Consensus 24 ~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l---~~~~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~--~~G~ 96 (119)
T 1w4v_A 24 QDRVVNSETPVVVDFHAQWCGPCKILGPRL---EKMVAKQHGKVVMAKVDIDD--HTDLAIEYEVSAVPTVLAM--KNGD 96 (119)
T ss_dssp HHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTSSEEEEEETTT--THHHHHHTTCCSSSEEEEE--ETTE
T ss_pred HHHHHcCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEeCCC--CHHHHHHcCCCcccEEEEE--eCCc
Confidence 333445789999999999999999986443 23444444578888877764 3468899999999999999 3799
Q ss_pred eeEEEeCCCChHHHHHHHHhhh
Q 013379 253 KMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 253 ~v~~~~G~~~~~~~l~~L~~~l 274 (444)
++.++.|..+.+.|...|.+.+
T Consensus 97 ~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 97 VVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp EEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHh
Confidence 8889999989998888887654
No 33
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=98.34 E-value=4.3e-06 Score=67.17 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=73.1
Q ss_pred HHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeee
Q 013379 175 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 254 (444)
Q Consensus 175 ~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v 254 (444)
.+.+.+|+++|++++++|..|..+...+ +.+.+...+++.+..++.+. ...++..|++..+|++.++. +|+.+
T Consensus 12 ~~~~~~~~~~v~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~--~G~~~ 84 (105)
T 1nsw_A 12 QAIQGDGPVLVDFWAAWCGPCRMMAPVL---EEFAEAHADKVTVAKLNVDE--NPETTSQFGIMSIPTLILFK--GGRPV 84 (105)
T ss_dssp HHHSSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHSTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--TTEEE
T ss_pred HHHhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCcEEEEEECcC--CHHHHHHcCCccccEEEEEe--CCeEE
Confidence 3446789999999999999999986543 44555555668888777754 45688999999999999993 79988
Q ss_pred EEEeCCCChHHHHHHHHhhh
Q 013379 255 RSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 255 ~~~~G~~~~~~~l~~L~~~l 274 (444)
.++.|..+++.+...|.+.+
T Consensus 85 ~~~~G~~~~~~l~~~l~~~l 104 (105)
T 1nsw_A 85 KQLIGYQPKEQLEAQLADVL 104 (105)
T ss_dssp EEEESCCCHHHHHHHTTTTT
T ss_pred EEEecCCCHHHHHHHHHHHh
Confidence 89999999888877776543
No 34
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=98.34 E-value=6.3e-06 Score=66.23 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=76.8
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii 246 (444)
.+|.+++ ...+|+++|++++++|..|..+...+ +.+.+.+..++.++.++.+.. ..++..|++..+|+++++
T Consensus 10 ~~~~~~~---~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~ 81 (107)
T 2i4a_A 10 SSFDQDV---LKASGLVLVDFWAEWCGPCKMIGPAL---GEIGKEFAGKVTVAKVNIDDN--PETPNAYQVRSIPTLMLV 81 (107)
T ss_dssp TTHHHHT---TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTSEEEEEEETTTC--CHHHHHTTCCSSSEEEEE
T ss_pred hhhhHHH---HhCCCEEEEEEECCCChhHHHHhHHH---HHHHHHhCCcEEEEEEECCCC--HHHHHhcCCCccCEEEEE
Confidence 4555544 36789999999999999999996554 455555666888888887643 467889999999999999
Q ss_pred eCCCCeeeEEEeCCCChHHHHHHHHhh
Q 013379 247 DPITGQKMRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 247 ~p~tg~~v~~~~G~~~~~~~l~~L~~~ 273 (444)
.+|+.+.++.|..+.+.+...|.+.
T Consensus 82 --~~G~~~~~~~G~~~~~~l~~~l~~~ 106 (107)
T 2i4a_A 82 --RDGKVIDKKVGALPKSQLKAWVESA 106 (107)
T ss_dssp --ETTEEEEEEESCCCHHHHHHHHHHT
T ss_pred --eCCEEEEEecCCCCHHHHHHHHHhc
Confidence 3799998999999998888877654
No 35
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=98.33 E-value=5e-06 Score=67.76 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=78.5
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii 246 (444)
.+|...+ ...+|+++|++++++|..|..+...+ +.+.+.+..++.+..++.+. ...++..|++..+|+++++
T Consensus 15 ~~~~~~~---~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~ 86 (115)
T 1thx_A 15 AEFESEV---LKAEQPVLVYFWASWCGPCQLMSPLI---NLAANTYSDRLKVVKLEIDP--NPTTVKKYKVEGVPALRLV 86 (115)
T ss_dssp GGHHHHT---TTCSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEESTT--CHHHHHHTTCCSSSEEEEE
T ss_pred cchhhHh---hcCCceEEEEEECCCCHHHHHhHHHH---HHHHHHhCCcEEEEEEEcCC--CHHHHHHcCCCceeEEEEE
Confidence 4555544 36789999999999999999996543 45555555678888777764 3468899999999999999
Q ss_pred eCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 247 DPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 247 ~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
.+|+.+.++.|..+.+.|...|.+.+.
T Consensus 87 --~~G~~~~~~~g~~~~~~l~~~l~~~l~ 113 (115)
T 1thx_A 87 --KGEQILDSTEGVISKDKLLSFLDTHLN 113 (115)
T ss_dssp --ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred --cCCEEEEEecCCCCHHHHHHHHHHHhc
Confidence 379999899999999999888887765
No 36
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=98.33 E-value=3.5e-06 Score=68.58 Aligned_cols=98 Identities=13% Similarity=0.230 Sum_probs=78.5
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
..+|++++..|+..+|+++|++++++|..|..+.. .+.++.+. ++.+..++.+. ...++..|++..+|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~------~l~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt~ 83 (113)
T 1ti3_A 12 VDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAP------IFAELAKKFPNVTFLKVDVDE--LKAVAEEWNVEAMPTF 83 (113)
T ss_dssp HHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHH------HHHHHHHHCSSEEEEEEETTT--CHHHHHHHHCSSTTEE
T ss_pred HHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHH------HHHHHHHhCCCcEEEEEEccc--cHHHHHhCCCCcccEE
Confidence 35788999999889999999999999999999853 33444433 68888777754 4567889999999999
Q ss_pred EEEeCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 244 LVVDPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 244 ~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
+++. .|+.+.++.| .+++.|...|...+
T Consensus 84 ~~~~--~G~~~~~~~g-~~~~~l~~~l~~~~ 111 (113)
T 1ti3_A 84 IFLK--DGKLVDKTVG-ADKDGLPTLVAKHA 111 (113)
T ss_dssp EEEE--TTEEEEEEEC-CCTTHHHHHHHHHH
T ss_pred EEEe--CCEEEEEEec-CCHHHHHHHHHHhh
Confidence 8884 7999989999 57888888777665
No 37
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=98.33 E-value=4.8e-06 Score=70.89 Aligned_cols=101 Identities=14% Similarity=0.209 Sum_probs=82.1
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
..+|++++..+..++|+++|++++++|..|..+... +.++.+ .++.+..++.+. ...++..|++..+|++
T Consensus 32 ~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~------l~~l~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt~ 103 (139)
T 3d22_A 32 KERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPY------YIELSENYPSLMFLVIDVDE--LSDFSASWEIKATPTF 103 (139)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEETTT--SHHHHHHTTCCEESEE
T ss_pred HHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHH------HHHHHHHCCCCEEEEEeCcc--cHHHHHHcCCCcccEE
Confidence 468999999999999999999999999999998643 344433 368888777754 4578899999999999
Q ss_pred EEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 244 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 244 ~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
+|+ .+|+++.++.|. +++++...|...+...
T Consensus 104 ~~~--~~G~~~~~~~G~-~~~~l~~~l~~~~~~~ 134 (139)
T 3d22_A 104 FFL--RDGQQVDKLVGA-NKPELHKKITAILDSL 134 (139)
T ss_dssp EEE--ETTEEEEEEESC-CHHHHHHHHHHHHHTS
T ss_pred EEE--cCCeEEEEEeCC-CHHHHHHHHHHHhccC
Confidence 888 379999999998 8888888888777643
No 38
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=98.31 E-value=9.2e-06 Score=66.47 Aligned_cols=92 Identities=22% Similarity=0.347 Sum_probs=70.1
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
.+|++++..+ .+|+++|+++.++|..|..+.. .+.++-+ .+++|..++.+ +...++..|++.++|+++
T Consensus 9 ~~f~~~l~~~--~~k~vvv~F~a~wC~~C~~~~p------~~~~~~~~~~~~~~~~vd~d--~~~~l~~~~~V~~~PT~~ 78 (105)
T 3zzx_A 9 EDFTKQLNEA--GNKLVVIDFYATWCGPCKMIAP------KLEELSQSMSDVVFLKVDVD--ECEDIAQDNQIACMPTFL 78 (105)
T ss_dssp HHHHHHHHHT--TTSEEEEEEECTTCHHHHHHHH------HHHHHHHHCTTEEEEEEETT--TCHHHHHHTTCCBSSEEE
T ss_pred HHHHHHHHhc--CCCEEEEEEECCCCCCccCCCc------chhhhhhccCCeEEEEEecc--cCHHHHHHcCCCeecEEE
Confidence 3567766544 5799999999999999999853 3333333 36888877765 456789999999999998
Q ss_pred EEeCCCCeeeEEEeCCCChHHHHHHHH
Q 013379 245 VVDPITGQKMRSWCGMVQPESLLEDLV 271 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~~~~~~~l~~L~ 271 (444)
++. .|+.+.++.|. ++++|.+.|.
T Consensus 79 ~~~--~G~~v~~~~G~-~~~~l~~~i~ 102 (105)
T 3zzx_A 79 FMK--NGQKLDSLSGA-NYDKLLELVE 102 (105)
T ss_dssp EEE--TTEEEEEEESC-CHHHHHHHHH
T ss_pred EEE--CCEEEEEEeCc-CHHHHHHHHH
Confidence 884 79999999994 7777666554
No 39
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=98.30 E-value=1e-05 Score=64.29 Aligned_cols=98 Identities=14% Similarity=0.214 Sum_probs=75.0
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~i 245 (444)
..+|++++ ..+|+++|++++++|..|+.+...+ ..+.+.+.+ +.+..++.+. ...++..|++..+|++++
T Consensus 6 ~~~~~~~~----~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~-~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~ 75 (104)
T 2e0q_A 6 SKNFDSFL----ASHEIAVVDFWAEWCAPCLILAPII---EELAEDYPQ-VGFGKLNSDE--NPDIAARYGVMSLPTVIF 75 (104)
T ss_dssp TTTHHHHH----HHSSEEEEEEECTTCHHHHHHHHHH---HHHHHHCTT-SEEEEEETTT--CHHHHHHTTCCSSCEEEE
T ss_pred HHHHHHHH----hcCCcEEEEEECCCChhHHHHhHHH---HHHHHHcCC-ceEEEEECCC--CHHHHHhCCccccCEEEE
Confidence 34677766 4689999999999999999986432 223333333 7777777654 356889999999999999
Q ss_pred EeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 246 VDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 246 i~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
+ .+|+.+.++.|..+.+.+...|...+.
T Consensus 76 ~--~~g~~~~~~~g~~~~~~l~~~l~~~l~ 103 (104)
T 2e0q_A 76 F--KDGEPVDEIIGAVPREEIEIRIKNLLG 103 (104)
T ss_dssp E--ETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred E--ECCeEhhhccCCCCHHHHHHHHHHHhc
Confidence 9 379988899999999988888877654
No 40
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=98.30 E-value=1.2e-06 Score=73.45 Aligned_cols=96 Identities=4% Similarity=-0.041 Sum_probs=78.7
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEe
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWC 258 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~ 258 (444)
..++.||++..++|..|+.|.+.|.....+....+ .+.+..++++......++..|++...|++++++ +|+.+.++.
T Consensus 17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~-~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~--~G~ev~Ri~ 93 (116)
T 3dml_A 17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGR-AAPVQRLQMRDPLPPGLELARPVTFTPTFVLMA--GDVESGRLE 93 (116)
T ss_dssp --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHH-HSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEE--TTEEEEEEE
T ss_pred cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcc-cceEEEEECCCCCchhHHHHCCCCCCCEEEEEE--CCEEEeeec
Confidence 34789999999999999999998888877765554 355555677765555677889999999999998 799999999
Q ss_pred CCCChHHHHHHHHhhhhcC
Q 013379 259 GMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 259 G~~~~~~~l~~L~~~l~~~ 277 (444)
|+.+++.|+..|...+...
T Consensus 94 G~~~~~~f~~~L~~~l~~~ 112 (116)
T 3dml_A 94 GYPGEDFFWPMLARLIGQA 112 (116)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhc
Confidence 9999999999999887644
No 41
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=98.30 E-value=7.9e-06 Score=65.84 Aligned_cols=93 Identities=14% Similarity=0.242 Sum_probs=73.1
Q ss_pred HHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeee
Q 013379 175 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 254 (444)
Q Consensus 175 ~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v 254 (444)
.....+|+++|++++++|..|..+...+ ..+.+-+..++.+..++.+. ...++..|++..+|+++++ .+|+.+
T Consensus 14 ~~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~--~~G~~~ 86 (107)
T 1dby_A 14 VVLESSVPVLVDFWAPWCGPCRIIAPVV---DEIAGEYKDKLKCVKLNTDE--SPNVASEYGIRSIPTIMVF--KGGKKC 86 (107)
T ss_dssp HTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHHTCCSSCEEEEE--SSSSEE
T ss_pred HHhcCCCcEEEEEECCCCHhHHHHHHHH---HHHHHHhCCceEEEEEECCC--CHHHHHHCCCCcCCEEEEE--eCCEEE
Confidence 3446789999999999999999986443 34444455678888777654 3468889999999998887 379988
Q ss_pred EEEeCCCChHHHHHHHHhhh
Q 013379 255 RSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 255 ~~~~G~~~~~~~l~~L~~~l 274 (444)
.++.|..+.+++...|.+.+
T Consensus 87 ~~~~G~~~~~~l~~~l~~~l 106 (107)
T 1dby_A 87 ETIIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp EEEESCCCHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHHHHh
Confidence 89999999988888887654
No 42
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=98.29 E-value=8e-06 Score=65.92 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=76.2
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii 246 (444)
.+|.+.+ .+.+|+++|++++++|..|+.+...+ ..+.+....++.+..++.+.. ..++..|++..+|+++++
T Consensus 10 ~~f~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~ 81 (108)
T 2trx_A 10 DSFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLLLF 81 (108)
T ss_dssp TTHHHHT---TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTTC--TTHHHHTTCCSSSEEEEE
T ss_pred hhHHHHH---HhcCCeEEEEEECCCCHhHHHHHHHH---HHHHHHhCCCcEEEEEECCCC--HHHHHHcCCcccCEEEEE
Confidence 4555443 46789999999999999999986543 344555556788888777643 357889999999999999
Q ss_pred eCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 247 DPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 247 ~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
.+|+.+.++.|..+.++|...|.+.+
T Consensus 82 --~~G~~~~~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 82 --KNGEVAATKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp --ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred --eCCEEEEEEecCCCHHHHHHHHHHhh
Confidence 37999999999999998888877654
No 43
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.28 E-value=1e-06 Score=69.75 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=57.5
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCC-CCcCCChhhcCCCCc-eEEE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLD-YDSKLTFEDSGLANA-MISV 441 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~-~~~~~Tl~e~gL~~~-~v~v 441 (444)
+|+||+++|+.++..|..++||.+|..+|.... +.....+.|..+||++. +. .+.++||+++||.++ +|.|
T Consensus 2 ~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~-gi~~~~qrL~~~~p~k~--l~l~~~~~tL~~~gl~~g~~l~v 74 (86)
T 2kzr_A 2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAIT-GIAPGSQRILVGYPPEC--LDLSDRDITLGDLPIQSGDMLIV 74 (86)
T ss_dssp CEEEEETTEEEEECSCCTTCBHHHHHHHHHHHT-CCCTTTCCCEESSCCCC--CCCCCSSCBTTTSSCCTTCEEEC
T ss_pred EEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHh-CCCccceEEEeCCCCcc--cccCCCCCCHHHcCCCCCCEEEE
Confidence 689999999877655999999999999999864 55667889999999876 42 236899999999954 4544
No 44
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=98.26 E-value=1.3e-05 Score=69.05 Aligned_cols=101 Identities=12% Similarity=0.144 Sum_probs=81.1
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~i 245 (444)
..+|++++ ..+|++||++++++|..|..+...+ ..+.+.+..++.+..++.+. ...++..|++..+|++++
T Consensus 45 ~~~~~~~~----~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~~~ 115 (148)
T 3p2a_A 45 AETLDKLL----QDDLPMVIDFWAPWCGPCRSFAPIF---AETAAERAGKVRFVKVNTEA--EPALSTRFRIRSIPTIML 115 (148)
T ss_dssp TTTHHHHT----TCSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEE
T ss_pred HHHHHHHH----hcCCcEEEEEECCCCHHHHHHHHHH---HHHHHHcCCceEEEEEECcC--CHHHHHHCCCCccCEEEE
Confidence 45666665 7889999999999999999985433 34444455678888777754 457889999999999999
Q ss_pred EeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 246 VDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 246 i~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
+. +|+.+.++.|..+.+.|...|.+.+...
T Consensus 116 ~~--~G~~~~~~~G~~~~~~l~~~l~~~l~~~ 145 (148)
T 3p2a_A 116 YR--NGKMIDMLNGAVPKAPFDNWLDEQLSRD 145 (148)
T ss_dssp EE--TTEEEEEESSCCCHHHHHHHHHHHHHSC
T ss_pred EE--CCeEEEEEeCCCCHHHHHHHHHHHhccc
Confidence 85 7999999999999999999999887754
No 45
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=98.25 E-value=4.8e-06 Score=68.75 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=73.3
Q ss_pred HHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeee
Q 013379 175 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 254 (444)
Q Consensus 175 ~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v 254 (444)
.+.+.+|++||++++++|..|+.+...+ +.+.+-...++.+..++.+. ...++..|++..+|+++++. +|+.+
T Consensus 25 ~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~--~g~~~ 97 (121)
T 2i1u_A 25 DVLSSNKPVLVDFWATWCGPCKMVAPVL---EEIATERATDLTVAKLDVDT--NPETARNFQVVSIPTLILFK--DGQPV 97 (121)
T ss_dssp HTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--TTEEE
T ss_pred HHHhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEECCC--CHHHHHhcCCCcCCEEEEEE--CCEEE
Confidence 3345789999999999999999996543 44555555678888777764 35688999999999998885 79989
Q ss_pred EEEeCCCChHHHHHHHHhhh
Q 013379 255 RSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 255 ~~~~G~~~~~~~l~~L~~~l 274 (444)
.++.|..+.+.|...|...+
T Consensus 98 ~~~~G~~~~~~l~~~l~~~l 117 (121)
T 2i1u_A 98 KRIVGAKGKAALLRELSDVV 117 (121)
T ss_dssp EEEESCCCHHHHHHHTCSCC
T ss_pred EEecCCCCHHHHHHHHHHHH
Confidence 99999999888877766554
No 46
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=98.24 E-value=4.3e-07 Score=86.89 Aligned_cols=46 Identities=17% Similarity=0.384 Sum_probs=40.0
Q ss_pred CCcchHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013379 5 LSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (444)
Q Consensus 5 l~~~~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (444)
|.+.+ +++|.+||+| ||+++.+|++||+.++||||.|++.||+.+.
T Consensus 11 l~~~~-~~~i~qF~~i-Tg~~~~~A~~~L~~~~WdLe~Al~~ff~~~~ 56 (270)
T 3bq3_A 11 DASPE-QEAIESFTSL-TKCDPKVSRKYLQRNHWNINYALNDYYDKEI 56 (270)
T ss_dssp --CHH-HHHHHHHHHH-HCCCHHHHHHHHHTTTTCHHHHHHHHHHHHC
T ss_pred hccch-HHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhCcc
Confidence 44444 6699999999 9999999999999999999999999998754
No 47
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=98.24 E-value=6.1e-06 Score=69.37 Aligned_cols=91 Identities=8% Similarity=0.184 Sum_probs=74.3
Q ss_pred HHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeee
Q 013379 175 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 254 (444)
Q Consensus 175 ~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v 254 (444)
.+..++|++||++++++|..|..+...+ +.+.+.++.++.+..++.+. ...++..|++..+|+++++. .|+.+
T Consensus 37 ~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~--~G~~~ 109 (128)
T 3ul3_B 37 GVNMKNTVIVLYFFAKWCQACTMQSTEM---DKLQKYYGKRIYLLKVDLDK--NESLARKFSVKSLPTIILLK--NKTML 109 (128)
T ss_dssp BTTSCCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGEEEEEEEGGG--CHHHHHHTTCCSSSEEEEEE--TTEEE
T ss_pred HHHccCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCCcCEEEEEE--CCEEE
Confidence 3456789999999999999999996544 45556666788888877754 45789999999999999994 79999
Q ss_pred EEEeCCCChHHHHHHHHh
Q 013379 255 RSWCGMVQPESLLEDLVP 272 (444)
Q Consensus 255 ~~~~G~~~~~~~l~~L~~ 272 (444)
.++.|..+.+++...|.+
T Consensus 110 ~~~~G~~~~~~l~~~l~~ 127 (128)
T 3ul3_B 110 ARKDHFVSSNDLIALIKK 127 (128)
T ss_dssp EEESSCCCHHHHHHHHTT
T ss_pred EEecCCCCHHHHHHHHHh
Confidence 999999999988887754
No 48
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=98.23 E-value=2.3e-05 Score=62.75 Aligned_cols=96 Identities=15% Similarity=0.268 Sum_probs=72.8
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEe
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~ 247 (444)
+|++++.. .++|+++|++++++|..|..+...+ ..+.+-.+.++.++.++.+. ...++..|++..+|+++++.
T Consensus 10 ~~~~~l~~--~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~ 82 (106)
T 1xwb_A 10 DLDGQLTK--ASGKLVVLDFFATWCGPCKMISPKL---VELSTQFADNVVVLKVDVDE--CEDIAMEYNISSMPTFVFLK 82 (106)
T ss_dssp HHHHHHHH--HTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTT--CHHHHHHTTCCSSSEEEEEE
T ss_pred HHHHHHHh--cCCCEEEEEEECCcCHHHHHhhHHH---HHHHHHhCCCeEEEEEeccc--hHHHHHHcCCCcccEEEEEc
Confidence 45555542 4789999999999999999986533 23444444678888877764 45688999999999988774
Q ss_pred CCCCeeeEEEeCCCChHHHHHHHHhh
Q 013379 248 PITGQKMRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 248 p~tg~~v~~~~G~~~~~~~l~~L~~~ 273 (444)
+|+.+.++.| .+++.+...|.+.
T Consensus 83 --~G~~~~~~~g-~~~~~l~~~i~~~ 105 (106)
T 1xwb_A 83 --NGVKVEEFAG-ANAKRLEDVIKAN 105 (106)
T ss_dssp --TTEEEEEEES-CCHHHHHHHHHHT
T ss_pred --CCcEEEEEcC-CCHHHHHHHHHHh
Confidence 7998999999 6888777766554
No 49
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=98.22 E-value=8.3e-06 Score=66.39 Aligned_cols=92 Identities=18% Similarity=0.227 Sum_probs=72.6
Q ss_pred HHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEE
Q 013379 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 256 (444)
Q Consensus 177 ~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~ 256 (444)
.+.+|+++|++++++|..|..+...+ ..+.+-+..++.++.++.+. ...++..|++..+|+++++. +|+++.+
T Consensus 20 ~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~--~G~~~~~ 92 (112)
T 1t00_A 20 LKNDKPVLVDFWAAWCGPCRQIAPSL---EAIAAEYGDKIEIVKLNIDE--NPGTAAKYGVMSIPTLNVYQ--GGEVAKT 92 (112)
T ss_dssp TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--TTEEEEE
T ss_pred hhCCCeEEEEEECCCCHhHHhcCHHH---HHHHHHhcCCeEEEEEEcCC--CHHHHHhCCCCcccEEEEEe--CCEEEEE
Confidence 35689999999999999999986433 33444444568888877764 35688999999999988873 7999999
Q ss_pred EeCCCChHHHHHHHHhhhh
Q 013379 257 WCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 257 ~~G~~~~~~~l~~L~~~l~ 275 (444)
+.|..+.+++...|.+.+.
T Consensus 93 ~~G~~~~~~l~~~l~~~l~ 111 (112)
T 1t00_A 93 IVGAKPKAAIVRDLEDFIA 111 (112)
T ss_dssp EESCCCHHHHHHHTHHHHC
T ss_pred EeCCCCHHHHHHHHHHHhh
Confidence 9999999988888877653
No 50
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=98.22 E-value=1.1e-05 Score=68.79 Aligned_cols=90 Identities=18% Similarity=0.194 Sum_probs=72.9
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEe
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWC 258 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~ 258 (444)
.+|++||++++++|..|..+...+ ..+.+.+..++.++.++.+. ...++..|++..+|+++++++ .|+++ ...
T Consensus 50 ~~k~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~-~g~~~-~~~ 122 (141)
T 3hxs_A 50 GDKPAIVDFYADWCGPCKMVAPIL---EELSKEYAGKIYIYKVNVDK--EPELARDFGIQSIPTIWFVPM-KGEPQ-VNM 122 (141)
T ss_dssp CSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEECS-SSCCE-EEE
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhcCceEEEEEECCC--CHHHHHHcCCCCcCEEEEEeC-CCCEE-EEe
Confidence 579999999999999999996544 55555556678888777754 457899999999999999985 57766 778
Q ss_pred CCCChHHHHHHHHhhhh
Q 013379 259 GMVQPESLLEDLVPFMD 275 (444)
Q Consensus 259 G~~~~~~~l~~L~~~l~ 275 (444)
|..+.++|...|...+.
T Consensus 123 G~~~~~~l~~~l~~~l~ 139 (141)
T 3hxs_A 123 GALSKEQLKGYIDKVLL 139 (141)
T ss_dssp SCCCHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 99999999888887764
No 51
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=98.21 E-value=9.3e-06 Score=64.96 Aligned_cols=97 Identities=16% Similarity=0.292 Sum_probs=75.0
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii 246 (444)
.+|++.+ .+.+|+++|++++++|..|+.+...+ ..+.+-+..++.+..++.+. ...++..|++..+|+++++
T Consensus 8 ~~~~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~ 79 (105)
T 1fb6_A 8 SSWKEFV---LESEVPVMVDFWAPWCGPCKLIAPVI---DELAKEYSGKIAVYKLNTDE--APGIATQYNIRSIPTVLFF 79 (105)
T ss_dssp TTHHHHT---TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred hhHHHHH---hcCCCcEEEEEECCCChHHHHHHHHH---HHHHHHhcCceEEEEEcCcc--hHHHHHhCCCCcccEEEEE
Confidence 3455543 34689999999999999999996543 44555555678888777654 4568899999999998887
Q ss_pred eCCCCeeeEEEeCCCChHHHHHHHHhh
Q 013379 247 DPITGQKMRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 247 ~p~tg~~v~~~~G~~~~~~~l~~L~~~ 273 (444)
. +|+.+.++.|..+.+.+...|.+.
T Consensus 80 ~--~g~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 80 K--NGERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp E--TTEEEEEEEECCCHHHHHHHHHHH
T ss_pred e--CCeEEEEEecCCCHHHHHHHHHhh
Confidence 3 799998999999998888877654
No 52
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=98.20 E-value=6.5e-06 Score=69.54 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=76.6
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii 246 (444)
.+|++.+ .+.+|++||++.+++|..|..+...+ ..+.+.+..++.+..++.+.. ..++..|++..+|+++++
T Consensus 30 ~~f~~~~---~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~ 101 (128)
T 2o8v_B 30 DSFDTDV---LKADGAILVDFWAEWCGPAKMIAPIL---DEIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLLLF 101 (128)
T ss_dssp TTHHHHT---TTCSSEEEEEEECSSCHHHHHTHHHH---HHHHHHTTTTEEEEEEETTTC--CTTSGGGTCCSSSEEEEE
T ss_pred hhHHHHH---HhcCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCCC--HHHHHHcCCCccCEEEEE
Confidence 4555443 46789999999999999999986443 345555556788888877643 357889999999999999
Q ss_pred eCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 247 DPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 247 ~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
.+|+++.++.|..+.++|...|.+.+
T Consensus 102 --~~G~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 102 --KNGEVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp --ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred --eCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence 37999999999999998888887654
No 53
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.20 E-value=9.7e-06 Score=67.93 Aligned_cols=103 Identities=13% Similarity=0.182 Sum_probs=79.7
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~i 245 (444)
..+|++.+ .+.+|++||++++++|..|+.+...+ +.+.+.+..++.+..++.+. ...++..|++..+|++++
T Consensus 24 ~~~f~~~~---~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~~~ 95 (130)
T 2dml_A 24 PSNFNREV---IQSDGLWLVEFYAPWCGHCQRLTPEW---KKAATALKDVVKVGAVNADK--HQSLGGQYGVQGFPTIKI 95 (130)
T ss_dssp TTTHHHHT---TTCSSCEEEEEECTTCSTTGGGHHHH---HHHHHHTTTTSEEEEEETTT--CHHHHHHHTCCSSSEEEE
T ss_pred HHHHHHHH---hcCCCeEEEEEECCCCHHHHhhCHHH---HHHHHHhcCceEEEEEeCCC--CHHHHHHcCCCccCEEEE
Confidence 34566544 35689999999999999999986544 45555556668888777654 456889999999999999
Q ss_pred EeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 246 VDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 246 i~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
+++ .|.++..+.|..+.++|+..|.+.+...
T Consensus 96 ~~~-~~~~~~~~~G~~~~~~l~~~l~~~l~~~ 126 (130)
T 2dml_A 96 FGA-NKNKPEDYQGGRTGEAIVDAALSALRSG 126 (130)
T ss_dssp ESS-CTTSCEECCSCCSHHHHHHHHHHHHHHS
T ss_pred EeC-CCCeEEEeecCCCHHHHHHHHHHHHhcC
Confidence 985 4555778889999999999998887644
No 54
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=98.20 E-value=1.7e-05 Score=64.72 Aligned_cols=89 Identities=18% Similarity=0.290 Sum_probs=68.0
Q ss_pred HHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCC
Q 013379 173 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPIT 250 (444)
Q Consensus 173 ~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~t 250 (444)
+..+.+++|++||++.+++|..|..+.. .+.++.+ .++.+..++.+. ...++..|++..+|++++++ .
T Consensus 17 f~~~~~~~k~vlv~f~a~wC~~C~~~~p------~l~~l~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~--~ 86 (109)
T 3f3q_A 17 FDSAIAQDKLVVVDFYATWCGPCKMIAP------MIEKFSEQYPQADFYKLDVDE--LGDVAQKNEVSAMPTLLLFK--N 86 (109)
T ss_dssp HHHHTTSSSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--T
T ss_pred HHHHHhcCCEEEEEEECCcCHhHHHHHH------HHHHHHHHCCCCEEEEEECCC--CHHHHHHcCCCccCEEEEEE--C
Confidence 3445567999999999999999999864 3344433 246677666653 45688999999999999997 7
Q ss_pred CeeeEEEeCCCChHHHHHHHHh
Q 013379 251 GQKMRSWCGMVQPESLLEDLVP 272 (444)
Q Consensus 251 g~~v~~~~G~~~~~~~l~~L~~ 272 (444)
|+.+.++.|. +++++.+.|.+
T Consensus 87 G~~~~~~~G~-~~~~l~~~i~~ 107 (109)
T 3f3q_A 87 GKEVAKVVGA-NPAAIKQAIAA 107 (109)
T ss_dssp TEEEEEEESS-CHHHHHHHHHH
T ss_pred CEEEEEEeCC-CHHHHHHHHHh
Confidence 9999999998 67777766654
No 55
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=98.20 E-value=1.1e-05 Score=68.96 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=81.6
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEe
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~ 247 (444)
+-++..+.....+|++||++.+++|..|..+...+ +.+.+.+..++.|..++.+. ...++..|++..+|+++|+.
T Consensus 12 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~ 86 (140)
T 3hz4_A 12 EDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYF---EEYAKEYGSSAVFGRINIAT--NPWTAEKYGVQGTPTFKFFC 86 (140)
T ss_dssp CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEETTT--CHHHHHHHTCCEESEEEEEE
T ss_pred chHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCc--CHhHHHHCCCCcCCEEEEEe
Confidence 33333445556799999999999999999996544 56666666778888777754 45788999999999999884
Q ss_pred CCCCeeeEEEeCCCChHHHHHHHHhhhhc
Q 013379 248 PITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 248 p~tg~~v~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
+|+.+.++.|..+.+.|...|...+..
T Consensus 87 --~G~~~~~~~G~~~~~~l~~~l~~~l~~ 113 (140)
T 3hz4_A 87 --HGRPVWEQVGQIYPSILKNAVRDMLQH 113 (140)
T ss_dssp --TTEEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred --CCcEEEEEcCCCCHHHHHHHHHHHhcc
Confidence 799999999999999999999888864
No 56
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=98.18 E-value=9.8e-06 Score=65.45 Aligned_cols=87 Identities=11% Similarity=0.152 Sum_probs=63.9
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeE
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR 255 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~ 255 (444)
+++|+++|++++++|..|..+. +.+.++.+ .++.+..++.+.. ..++..|++..+|+++++. +|+.+.
T Consensus 16 ~~~~~vlv~f~a~wC~~C~~~~------p~~~~~~~~~~~~~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~--~G~~~~ 85 (105)
T 4euy_A 16 EEQQLVLLFIKTENCGVCDVML------RKVNYVLENYNYVEKIEILLQDM--QEIAGRYAVFTGPTVLLFY--NGKEIL 85 (105)
T ss_dssp TCSSEEEEEEEESSCHHHHHHH------HHHHHHHHTCTTEEEEEEEECCC-----------CCCCEEEEEE--TTEEEE
T ss_pred hcCCCEEEEEeCCCCcchHHHH------HHHHHHHHHcCCceEEEEECCCC--HHHHHhcCCCCCCEEEEEe--CCeEEE
Confidence 5789999999999999999985 34444444 3688888777643 4678899999999999995 799999
Q ss_pred EEeCCCChHHHHHHHHhhh
Q 013379 256 SWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 256 ~~~G~~~~~~~l~~L~~~l 274 (444)
++.|..+.++|...|.+.+
T Consensus 86 ~~~g~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 86 RESRFISLENLERTIQLFE 104 (105)
T ss_dssp EEESSCCHHHHHHHHHTTC
T ss_pred EEeCCcCHHHHHHHHHHhh
Confidence 9999999999998887664
No 57
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=98.18 E-value=3e-05 Score=63.32 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=73.1
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
-..+|++++ +.+|++||++++++|..|..+...+ ..+.+-. .++.+..++.+. ...++..|++..+|+++
T Consensus 15 ~~~~f~~~~----~~~k~vlv~f~a~~C~~C~~~~~~l---~~l~~~~-~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~~ 84 (112)
T 1syr_A 15 SQAEFDSII----SQNELVIVDFFAEWCGPCKRIAPFY---EECSKTY-TKMVFIKVDVDE--VSEVTEKENITSMPTFK 84 (112)
T ss_dssp SHHHHHHHH----HHCSEEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTT--THHHHHHTTCCSSSEEE
T ss_pred CHHHHHHHH----ccCCeEEEEEECCCCHHHHHHHHHH---HHHHHHc-CCCEEEEEECCC--CHHHHHHcCCCcccEEE
Confidence 345677766 3789999999999999999986433 2222222 258888777764 34688999999999988
Q ss_pred EEeCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 245 VVDPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
++. +|+.+.++.|. +.++|...|...+
T Consensus 85 ~~~--~G~~~~~~~G~-~~~~l~~~l~~~l 111 (112)
T 1syr_A 85 VYK--NGSSVDTLLGA-NDSALKQLIEKYA 111 (112)
T ss_dssp EEE--TTEEEEEEESC-CHHHHHHHHHTTC
T ss_pred EEE--CCcEEEEEeCC-CHHHHHHHHHHhh
Confidence 774 79988899998 8888887776543
No 58
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=98.18 E-value=9.7e-06 Score=68.95 Aligned_cols=93 Identities=14% Similarity=0.209 Sum_probs=74.1
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEe
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWC 258 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~ 258 (444)
.+|++||++++++|..|..+...+ ..+.+.+..++.+..++.+. ...++..|++..+|+++++++ +|+++ ...
T Consensus 37 ~~k~~lv~f~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~-~G~~~-~~~ 109 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPCKMVAPIL---DELAKEYDGQIVIYKVDTEK--EQELAGAFGIRSIPSILFIPM-EGKPE-MAQ 109 (136)
T ss_dssp CSSCEEEEEECTTSHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSCEEEEECS-SSCCE-EEE
T ss_pred CCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhcCCEEEEEEeCCC--CHHHHHHcCCCCCCEEEEECC-CCcEE-EEe
Confidence 579999999999999999986543 34555555678888877764 346889999999999999985 68776 678
Q ss_pred CCCChHHHHHHHHhhhhcCC
Q 013379 259 GMVQPESLLEDLVPFMDGGP 278 (444)
Q Consensus 259 G~~~~~~~l~~L~~~l~~~~ 278 (444)
|..+.+.|...|.+.+....
T Consensus 110 G~~~~~~l~~~l~~~~~~~~ 129 (136)
T 2l5l_A 110 GAMPKASFKKAIDEFLLKKE 129 (136)
T ss_dssp SCCCHHHHHHHHHHHHTSCT
T ss_pred CCCCHHHHHHHHHHHhhccC
Confidence 99999999998888876543
No 59
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=98.17 E-value=1.5e-05 Score=69.70 Aligned_cols=91 Identities=13% Similarity=0.156 Sum_probs=74.8
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEE
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW 257 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~ 257 (444)
+.+|++||++++++|..|..+...+ +.+.+-+..++.|..++.+.. ..++..|++..+|+++++. +|+.+.++
T Consensus 62 ~~~~~vlv~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~--~G~~~~~~ 134 (155)
T 2ppt_A 62 RDDLPLLVDFWAPWCGPCRQMAPQF---QAAAATLAGQVRLAKIDTQAH--PAVAGRHRIQGIPAFILFH--KGRELARA 134 (155)
T ss_dssp TCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTTS--THHHHHTTCCSSSEEEEEE--TTEEEEEE
T ss_pred hCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHccCCEEEEEEeCCcc--HHHHHHcCCCcCCEEEEEe--CCeEEEEe
Confidence 7789999999999999999996543 355555556788888777643 4688999999999999984 79999999
Q ss_pred eCCCChHHHHHHHHhhhh
Q 013379 258 CGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 258 ~G~~~~~~~l~~L~~~l~ 275 (444)
.|..+.+.|...|.+.+.
T Consensus 135 ~G~~~~~~l~~~l~~~l~ 152 (155)
T 2ppt_A 135 AGARPASELVGFVRGKLG 152 (155)
T ss_dssp ESCCCHHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHHHhc
Confidence 999999999888887764
No 60
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=98.17 E-value=1.6e-05 Score=66.86 Aligned_cols=94 Identities=13% Similarity=0.216 Sum_probs=73.1
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
.+|++++ ..+|++||++++++|..|..+... +.++.+ .++.|+.++.+. ...++..|++..+|+++
T Consensus 28 ~~f~~~~----~~~k~vvv~F~a~wC~~C~~~~p~------l~~l~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~ 95 (125)
T 1r26_A 28 EQFRNIM----SEDILTVAWFTAVWCGPCKTIERP------MEKIAYEFPTVKFAKVDADN--NSEIVSKCRVLQLPTFI 95 (125)
T ss_dssp HHHHHHH----HSSSCEEEEEECTTCHHHHHTHHH------HHHHHHHCTTSEEEEEETTT--CHHHHHHTTCCSSSEEE
T ss_pred HHHHHHH----ccCCEEEEEEECCcCHhHHHHHHH------HHHHHHHCCCCEEEEEECCC--CHHHHHHcCCCcccEEE
Confidence 3455555 689999999999999999998643 333333 368888877764 45688999999999988
Q ss_pred EEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 245 VVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
|+ ..|+++.++.| .++++|...|...+.
T Consensus 96 i~--~~G~~~~~~~G-~~~~~l~~~l~~~l~ 123 (125)
T 1r26_A 96 IA--RSGKMLGHVIG-ANPGMLRQKLRDIIK 123 (125)
T ss_dssp EE--ETTEEEEEEES-SCHHHHHHHHHHHHH
T ss_pred EE--eCCeEEEEEeC-CCHHHHHHHHHHHhc
Confidence 87 37998989999 688888888877664
No 61
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=98.17 E-value=2.3e-05 Score=62.72 Aligned_cols=95 Identities=27% Similarity=0.369 Sum_probs=71.3
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEe
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~ 247 (444)
.|++++..+ .+|+++|++++++|..|..+...+ ..+.+... ++.+..++.+. ...++..|++..+|+++++.
T Consensus 10 ~~~~~l~~~--~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~ 81 (105)
T 3m9j_A 10 AFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFF---HSLSEKYS-NVIFLEVDVDD--CQDVASESEVKSMPTFQFFK 81 (105)
T ss_dssp HHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHH---HHHHHHST-TSEEEEEETTT--CHHHHHHTTCCBSSEEEEEE
T ss_pred HHHHHHHhc--CCCeEEEEEECCCChhhHHHHHHH---HHHHHHcc-CeEEEEEEhhh--hHHHHHHcCCCcCcEEEEEE
Confidence 455555433 689999999999999999986432 22333222 47777766654 46788999999999999994
Q ss_pred CCCCeeeEEEeCCCChHHHHHHHHhh
Q 013379 248 PITGQKMRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 248 p~tg~~v~~~~G~~~~~~~l~~L~~~ 273 (444)
.|+.+.++.|. +++.+...|.+.
T Consensus 82 --~g~~~~~~~g~-~~~~l~~~l~~~ 104 (105)
T 3m9j_A 82 --KGQKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp --TTEEEEEEESS-CHHHHHHHHHHH
T ss_pred --CCeEEEEEeCC-CHHHHHHHHHHh
Confidence 69999999998 888888877654
No 62
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=98.16 E-value=2.1e-05 Score=65.23 Aligned_cols=102 Identities=19% Similarity=0.256 Sum_probs=76.1
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
..|+..+.....++.+|++||++++++|..|..+...+ +.+.+.+ .++.+..++.+.. ..++..|++..+|+++
T Consensus 8 ~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l---~~l~~~~-~~v~~~~vd~~~~--~~~~~~~~i~~~Pt~~ 81 (118)
T 2f51_A 8 FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQIL---PSIAEAN-KDVTFIKVDVDKN--GNAADAYGVSSIPALF 81 (118)
T ss_dssp ECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTC--HHHHHHTTCCSSSEEE
T ss_pred ecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHC-CCeEEEEEECCCC--HHHHHhcCCCCCCEEE
Confidence 45677777766777899999999999999999986543 3344333 5788888777643 5688999999999999
Q ss_pred EEeCC--CCeeeEEEeCCCChHHHHHHHHhh
Q 013379 245 VVDPI--TGQKMRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 245 ii~p~--tg~~v~~~~G~~~~~~~l~~L~~~ 273 (444)
+++.. .|+++.++.|..+. ++...+.++
T Consensus 82 ~~~~~~~~G~~~~~~~G~~~~-~l~~~~~~~ 111 (118)
T 2f51_A 82 FVKKEGNEIKTLDQFVGADVS-RIKADIEKF 111 (118)
T ss_dssp EEEEETTEEEEEEEEESCCHH-HHHHHHHHH
T ss_pred EEeCCCCcceEEEeecCCCHH-HHHHHHHHh
Confidence 99731 27888999997644 455555544
No 63
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=1.9e-05 Score=66.24 Aligned_cols=101 Identities=11% Similarity=0.167 Sum_probs=79.2
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh----cCEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEGKKVCTYYKLDSIPV 242 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~----~~fV~w~~~~~s~eg~~~~~~y~~~~~P~ 242 (444)
.+|.+++ .+.+|++||++++++|..|..+...+ ..+.+.+. .++.+..++.+. ...++..|++..+|+
T Consensus 15 ~~~~~~~---~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt 86 (133)
T 1x5d_A 15 DSFDKNV---LDSEDVWMVEFYAPWCGHCKNLEPEW---AAAASEVKEQTKGKVKLAAVDATV--NQVLASRYGIRGFPT 86 (133)
T ss_dssp THHHHHT---TTSSSEEEEEEECTTCHHHHTHHHHH---HHHHHHHHHHTTTSEEEEEEETTT--CCHHHHHHTCCSSSE
T ss_pred hhHHHHH---hcCCCeEEEEEECCCCHHHHhhcHHH---HHHHHHHHhhcCCcEEEEEEECCC--CHHHHHhCCCCeeCe
Confidence 4455443 35689999999999999999986544 34555555 678888777754 346888999999999
Q ss_pred EEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 243 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 243 l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
++++++ |..+.++.|..+.+.|...|.+.+...
T Consensus 87 ~~~~~~--g~~~~~~~G~~~~~~l~~~l~~~~~~~ 119 (133)
T 1x5d_A 87 IKIFQK--GESPVDYDGGRTRSDIVSRALDLFSDN 119 (133)
T ss_dssp EEEEET--TEEEEEECSCCSHHHHHHHHHHHHHHH
T ss_pred EEEEeC--CCceEEecCCCCHHHHHHHHHHHhhcc
Confidence 999985 888888999999999999998887643
No 64
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=98.14 E-value=1.8e-05 Score=64.44 Aligned_cols=97 Identities=12% Similarity=0.326 Sum_probs=70.4
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh----cCEEEEEeecCChhHHHHHHHcCCCCCcE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEGKKVCTYYKLDSIPV 242 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~----~~fV~w~~~~~s~eg~~~~~~y~~~~~P~ 242 (444)
.+|++++.. +..+|+++|++++++|..|..+.. .+.++.+ .++.+..++.+. ...++..|++..+|+
T Consensus 9 ~~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~~~~------~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt 79 (112)
T 3d6i_A 9 EQFTYLTTT-AAGDKLIVLYFHTSWAEPCKALKQ------VFEAISNEPSNSNVSFLSIDADE--NSEISELFEISAVPY 79 (112)
T ss_dssp HHHHHHHTT-TTTTCCEEEEEECCC--CHHHHHH------HHHHHHHCGGGTTSEEEEEETTT--CHHHHHHTTCCSSSE
T ss_pred HHHHHHHhc-ccCCCEEEEEEECCCCHHHHHHHH------HHHHHHHhcCCCCEEEEEEeccc--CHHHHHHcCCCcccE
Confidence 346666554 456899999999999999999864 3344433 368888877754 346888999999999
Q ss_pred EEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 243 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 243 l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
++++. .|+.+.++.|. .+++|...|...+.
T Consensus 80 ~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~~~ 109 (112)
T 3d6i_A 80 FIIIH--KGTILKELSGA-DPKEYVSLLEDCKN 109 (112)
T ss_dssp EEEEE--TTEEEEEECSC-CHHHHHHHHHHHHH
T ss_pred EEEEE--CCEEEEEecCC-CHHHHHHHHHHHHh
Confidence 98884 79999999997 45567776666543
No 65
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=98.13 E-value=5e-06 Score=73.55 Aligned_cols=113 Identities=18% Similarity=0.239 Sum_probs=82.8
Q ss_pred hhcCCCccCcccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHH--hcCEEEEEeecCChhHHHHH
Q 013379 155 SLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI--STNFIFWQVYDDTSEGKKVC 232 (444)
Q Consensus 155 ~~f~pp~~~~~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l--~~~fV~w~~~~~s~eg~~~~ 232 (444)
..|++.... .+|++++..+..++|++||++..++|..|..+... |.. +.+.. +-+|+...++.+... ++
T Consensus 24 ~~~~~~i~w---~~~~~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~-l~~--~~~~~~~~~~~~~v~~d~~~~~---~~ 94 (164)
T 1sen_A 24 KGFGDHIHW---RTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPK-FAE--STEISELSHNFVMVNLEDEEEP---KD 94 (164)
T ss_dssp TTSCTTSCB---CCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHH-HHT--CHHHHHHHTTSEEEEEEGGGSC---SC
T ss_pred ccccccccc---cCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHH-HHH--HHHHhhcCCeEEEEEecCCchH---HH
Confidence 344554432 78999999999999999999999999999999763 333 22222 346776654443221 45
Q ss_pred HHcCC--CCCcEEEEEeCCCCeeeEEEeCC----------CChHHHHHHHHhhhhcC
Q 013379 233 TYYKL--DSIPVVLVVDPITGQKMRSWCGM----------VQPESLLEDLVPFMDGG 277 (444)
Q Consensus 233 ~~y~~--~~~P~l~ii~p~tg~~v~~~~G~----------~~~~~~l~~L~~~l~~~ 277 (444)
..|.+ ..+|+++|+++ +|+++.++.|. .++++|+..|...++..
T Consensus 95 ~~~~~~~~~~Pt~~~~d~-~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 150 (164)
T 1sen_A 95 EDFSPDGGYIPRILFLDP-SGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERL 150 (164)
T ss_dssp GGGCTTCSCSSEEEEECT-TSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHhcccCCcCCeEEEECC-CCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhc
Confidence 56777 56999999986 68888778884 78899999999888754
No 66
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=98.11 E-value=3.5e-05 Score=63.47 Aligned_cols=91 Identities=14% Similarity=0.182 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEEEEEe
Q 013379 170 EKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (444)
Q Consensus 170 ~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~ 247 (444)
.+.+..+.+.+|+++|++.+++|..|..+.. .+.++.++ ++.+..++.+. ...++..|++..+|+++++
T Consensus 20 ~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p------~l~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~- 90 (114)
T 2oe3_A 20 LTEFRNLIKQNDKLVIDFYATWCGPCKMMQP------HLTKLIQAYPDVRFVKCDVDE--SPDIAKECEVTAMPTFVLG- 90 (114)
T ss_dssp HHHHHHHHHHCSEEEEEEECTTCHHHHHTHH------HHHHHHHHCTTSEEEEEETTT--CHHHHHHTTCCSBSEEEEE-
T ss_pred HHHHHHHHhCCCEEEEEEECCCCHHHHHHHH------HHHHHHHHCCCCEEEEEECCC--CHHHHHHCCCCcccEEEEE-
Confidence 3444556668999999999999999999854 33444332 37777777654 3468899999999998877
Q ss_pred CCCCeeeEEEeCCCChHHHHHHHH
Q 013379 248 PITGQKMRSWCGMVQPESLLEDLV 271 (444)
Q Consensus 248 p~tg~~v~~~~G~~~~~~~l~~L~ 271 (444)
..|+.+.++.|.. ++.|.+.|.
T Consensus 91 -~~G~~~~~~~G~~-~~~l~~~l~ 112 (114)
T 2oe3_A 91 -KDGQLIGKIIGAN-PTALEKGIK 112 (114)
T ss_dssp -ETTEEEEEEESSC-HHHHHHHHH
T ss_pred -eCCeEEEEEeCCC-HHHHHHHHH
Confidence 3799999999987 777766654
No 67
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=98.10 E-value=3.7e-05 Score=62.02 Aligned_cols=95 Identities=9% Similarity=0.129 Sum_probs=70.8
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
.+|++++.. ..+|+++|++++++|..|..+... +.++.+ .++.+..++.+. ...++..|++..+|++.
T Consensus 10 ~~~~~~~~~--~~~~~v~v~f~a~wC~~C~~~~~~------~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~ 79 (107)
T 1gh2_A 10 PDFQPELSG--AGSRLAVVKFTMRGCGPCLRIAPA------FSSMSNKYPQAVFLEVDVHQ--CQGTAATNNISATPTFQ 79 (107)
T ss_dssp GGHHHHHHH--TTTSCEEEEEECSSCHHHHHHHHH------HHHHHHHCTTSEEEEEETTT--SHHHHHHTTCCSSSEEE
T ss_pred HHHHHHHHh--CCCCEEEEEEECCCChhhHHHHHH------HHHHHHHCCCcEEEEEECcc--CHHHHHhcCCCcccEEE
Confidence 467776653 578999999999999999998543 333333 368888777764 45688999999999999
Q ss_pred EEeCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 245 VVDPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
++. .|+.+.++.|. .++++...|.+.+
T Consensus 80 ~~~--~G~~~~~~~G~-~~~~l~~~l~~~l 106 (107)
T 1gh2_A 80 FFR--NKVRIDQYQGA-DAVGLEEKIKQHL 106 (107)
T ss_dssp EEE--TTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred EEE--CCeEEEEEeCC-CHHHHHHHHHHhc
Confidence 884 79988899995 4455666665543
No 68
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=98.08 E-value=2.3e-05 Score=65.16 Aligned_cols=95 Identities=19% Similarity=0.289 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii 246 (444)
+|++++ +.+|+++|++.+++|..|..+...+ ..+.+.+.. ++.++.++.+. ...++..|++..+|+++++
T Consensus 25 ~f~~~l----~~~k~vvv~f~a~~C~~C~~~~~~l---~~l~~~~~~~~v~~~~vd~d~--~~~~~~~~~v~~~Pt~~~~ 95 (121)
T 2j23_A 25 QFKQVT----GGDKVVVIDFWATWCGPCKMIGPVF---EKISDTPAGDKVGFYKVDVDE--QSQIAQEVGIRAMPTFVFF 95 (121)
T ss_dssp HHHHHH----SSSSCEEEEEECTTCSTHHHHHHHH---HHHHTSTHHHHSEEEEEETTT--CHHHHHHHTCCSSSEEEEE
T ss_pred HHHHHH----cCCCEEEEEEECCCCHhHHHHHHHH---HHHHHHCcCCcEEEEEEECcC--CHHHHHHcCCCcccEEEEE
Confidence 455544 7889999999999999999986433 233333333 38888777765 3468889999999999888
Q ss_pred eCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 247 DPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 247 ~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
. .|+.+.++.|. ++++|...|.+.+
T Consensus 96 ~--~G~~~~~~~G~-~~~~l~~~l~~~l 120 (121)
T 2j23_A 96 K--NGQKIDTVVGA-DPSKLQAAITQHS 120 (121)
T ss_dssp E--TTEEEEEEESS-CHHHHHHHHHHHT
T ss_pred E--CCeEEeeEcCC-CHHHHHHHHHHhh
Confidence 5 79988899998 8888887776653
No 69
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.08 E-value=2.9e-05 Score=65.79 Aligned_cols=101 Identities=11% Similarity=0.224 Sum_probs=76.8
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcC---EEEEEeecCChhHHHHHHHcCCCCCc
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDDTSEGKKVCTYYKLDSIP 241 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~---fV~w~~~~~s~eg~~~~~~y~~~~~P 241 (444)
-..+|++++ .++|++||+++.++|..|+.+...+ ..+.+.+... +.+..++.+. ...++..|++..+|
T Consensus 23 ~~~~~~~~~----~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~P 93 (140)
T 2dj1_A 23 NDGNFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEY---EKIASTLKDNDPPIAVAKIDATS--ASMLASKFDVSGYP 93 (140)
T ss_dssp CTTTHHHHH----TTCSEEEEEECCTTCHHHHTTHHHH---HHHHHHHHSSSSCCEEEEECTTT--CHHHHHHTTCCSSS
T ss_pred ChHhHHHHH----hcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCceEEEEEeCcc--cHHHHHHCCCCccC
Confidence 345676655 4689999999999999999885433 2344444443 8888766654 46788999999999
Q ss_pred EEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 242 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 242 ~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
+++|+. .|+ +..+.|..+.+.|...|...+...
T Consensus 94 t~~~~~--~G~-~~~~~g~~~~~~l~~~l~~~~~~~ 126 (140)
T 2dj1_A 94 TIKILK--KGQ-AVDYDGSRTQEEIVAKVREVSQPD 126 (140)
T ss_dssp EEEEEE--TTE-EEECCSCCCHHHHHHHHHHHHSSS
T ss_pred eEEEEE--CCc-EEEcCCCCCHHHHHHHHHHhcCCC
Confidence 999994 688 667889999999999998887643
No 70
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=98.07 E-value=6.7e-05 Score=60.46 Aligned_cols=93 Identities=13% Similarity=0.205 Sum_probs=74.5
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc------CEEEEEeecCChhHHHHHHHcCCC
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST------NFIFWQVYDDTSEGKKVCTYYKLD 238 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~------~fV~w~~~~~s~eg~~~~~~y~~~ 238 (444)
-..+|++++. +|++||++++++|..|..+. +.+.++.+. ++.+..++.+. ...++..|++.
T Consensus 11 ~~~~~~~~~~-----~~~~lv~f~~~~C~~C~~~~------~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~ 77 (111)
T 3uvt_A 11 TENNFDDTIA-----EGITFIKFYAPWCGHCKTLA------PTWEELSKKEFPGLAGVKIAEVDCTA--ERNICSKYSVR 77 (111)
T ss_dssp CTTTHHHHHH-----SSEEEEEEECSSCHHHHHHH------HHHHHHHTCCCCC-CCEEEEEEETTT--CHHHHHHTTCC
T ss_pred ChhhHHHHhc-----CCcEEEEEECCCChhHHHhh------HHHHHHHHHhhccCCceEEEEEeccc--cHhHHHhcCCC
Confidence 4567887775 78999999999999999884 455666553 57777777654 45689999999
Q ss_pred CCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHh
Q 013379 239 SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 272 (444)
Q Consensus 239 ~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~ 272 (444)
.+|+++++. .|+.+..+.|..+.+.|...|.+
T Consensus 78 ~~Pt~~~~~--~g~~~~~~~g~~~~~~l~~~l~~ 109 (111)
T 3uvt_A 78 GYPTLLLFR--GGKKVSEHSGGRDLDSLHRFVLS 109 (111)
T ss_dssp SSSEEEEEE--TTEEEEEECSCCSHHHHHHHHHH
T ss_pred cccEEEEEe--CCcEEEeccCCcCHHHHHHHHHh
Confidence 999999884 68888899999999988887764
No 71
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=98.07 E-value=3.7e-05 Score=65.15 Aligned_cols=97 Identities=12% Similarity=0.074 Sum_probs=73.4
Q ss_pred HHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCC-------------------------hhHHH
Q 013379 176 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-------------------------SEGKK 230 (444)
Q Consensus 176 A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s-------------------------~eg~~ 230 (444)
+.-.+|++||++.+++|..|..+...+ ..+.+-+.+.+.++.++.+. .....
T Consensus 25 ~~~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 101 (148)
T 2b5x_A 25 QLIGEKPTLIHFWSISCHLCKEAMPQV---NEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHA 101 (148)
T ss_dssp HHTTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCH
T ss_pred hhcCCCEEEEEEEcCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchh
Confidence 344689999999999999998875432 23333344447777777653 12246
Q ss_pred HHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhc
Q 013379 231 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 231 ~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
++..|++..+|+++||++ +|+++.+..|..+++++...|...+..
T Consensus 102 ~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~ 146 (148)
T 2b5x_A 102 LTDAFENEYVPAYYVFDK-TGQLRHFQAGGSGMKMLEKRVNRVLAE 146 (148)
T ss_dssp HHHHTCCCCSSEEEEECT-TCBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCEEEEECC-CCcEEEEecCCCCHHHHHHHHHHHHhc
Confidence 788899999999999996 699999999988999999888887753
No 72
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=98.06 E-value=4.9e-05 Score=62.46 Aligned_cols=94 Identities=16% Similarity=0.271 Sum_probs=72.2
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~i 245 (444)
.+|.+++.. ..+|+++|++++++|..|..+.. .+.++.+. ++.+..++.+. ...+++.|++..+|++++
T Consensus 22 ~~~~~~l~~--~~~~~~vv~f~a~wC~~C~~~~~------~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~ 91 (117)
T 2xc2_A 22 GDLESLLEQ--HKNKLVVVDFFATWCGPCKTIAP------LFKELSEKYDAIFVKVDVDK--LEETARKYNISAMPTFIA 91 (117)
T ss_dssp THHHHHHHH--TTTSCEEEEEECTTCHHHHHHHH------HHHHHHTTSSSEEEEEETTT--SHHHHHHTTCCSSSEEEE
T ss_pred HHHHHHHHh--CCCCEEEEEEECCCCHhHHHHhH------HHHHHHHHcCcEEEEEECCc--cHHHHHHcCCCccceEEE
Confidence 567776653 37899999999999999999853 44555444 67787777654 456889999999999888
Q ss_pred EeCCCCeeeEEEeCCCChHHHHHHHHhh
Q 013379 246 VDPITGQKMRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 246 i~p~tg~~v~~~~G~~~~~~~l~~L~~~ 273 (444)
+. +|+.+.++.| .+++++.+.|.+.
T Consensus 92 ~~--~G~~~~~~~G-~~~~~l~~~l~~~ 116 (117)
T 2xc2_A 92 IK--NGEKVGDVVG-ASIAKVEDMIKKF 116 (117)
T ss_dssp EE--TTEEEEEEES-SCHHHHHHHHHHH
T ss_pred Ee--CCcEEEEEeC-CCHHHHHHHHHHh
Confidence 74 7999999999 5787777766654
No 73
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=98.04 E-value=8.9e-05 Score=58.98 Aligned_cols=93 Identities=14% Similarity=0.264 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~i 245 (444)
+|++++.. ..+|+++|++++++|..|..+... +.++.+. ++.++.++.+. ...++..|++..+|++++
T Consensus 9 ~~~~~l~~--~~~~~~~v~f~~~~C~~C~~~~~~------l~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~ 78 (104)
T 2vim_A 9 DLEKLINE--NKGRLIVVDFFAQWCGPCRNIAPK------VEALAKEIPEVEFAKVDVDQ--NEEAAAKYSVTAMPTFVF 78 (104)
T ss_dssp HHHHHHHT--TTTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEETTT--CHHHHHHTTCCSSSEEEE
T ss_pred HHHHHHHh--cCCCeEEEEEECCCCHHHHHhhHH------HHHHHHHCCCCEEEEEeccC--CHHHHHHcCCccccEEEE
Confidence 35554432 378999999999999999998643 3344332 68888777754 356889999999999888
Q ss_pred EeCCCCeeeEEEeCCCChHHHHHHHHhh
Q 013379 246 VDPITGQKMRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 246 i~p~tg~~v~~~~G~~~~~~~l~~L~~~ 273 (444)
+. +|+.+.++.| .+++++...|.+.
T Consensus 79 ~~--~g~~~~~~~G-~~~~~l~~~l~~~ 103 (104)
T 2vim_A 79 IK--DGKEVDRFSG-ANETKLRETITRH 103 (104)
T ss_dssp EE--TTEEEEEEES-SCHHHHHHHHHHH
T ss_pred Ee--CCcEEEEEeC-CCHHHHHHHHHhh
Confidence 85 7999999999 5888877777654
No 74
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=98.03 E-value=3.9e-05 Score=65.33 Aligned_cols=98 Identities=16% Similarity=0.275 Sum_probs=72.1
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii 246 (444)
.+|.+++. +.++ ++|++++++|..|..+...+ ..+.+.+..++.|+.++.+. ...++..|++..+|+++++
T Consensus 41 ~~~~~~~~---~~~~-vvv~f~~~~C~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~ 111 (140)
T 1v98_A 41 KGFAQEVA---GAPL-TLVDFFAPWCGPCRLVSPIL---EELARDHAGRLKVVKVNVDE--HPGLAARYGVRSVPTLVLF 111 (140)
T ss_dssp -----------CCCE-EEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHHH---cCCC-EEEEEECCCCHHHHHHHHHH---HHHHHHccCceEEEEEECCC--CHHHHHHCCCCccCEEEEE
Confidence 34444433 4455 99999999999999996543 34555555578888877764 3568899999999999988
Q ss_pred eCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 247 DPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 247 ~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
. +|+.+.++.|..+.+.|...|...++
T Consensus 112 ~--~G~~~~~~~G~~~~~~l~~~i~~~l~ 138 (140)
T 1v98_A 112 R--RGAPVATWVGASPRRVLEERLRPYLE 138 (140)
T ss_dssp E--TTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred e--CCcEEEEEeCCCCHHHHHHHHHHHHc
Confidence 4 79999999999999998888887764
No 75
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=98.03 E-value=4.8e-05 Score=62.65 Aligned_cols=86 Identities=8% Similarity=0.065 Sum_probs=64.6
Q ss_pred HHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh---cCEEEEEeecCC----hhHHHHHHHcCCCCCcEEEEEeC
Q 013379 176 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDT----SEGKKVCTYYKLDSIPVVLVVDP 248 (444)
Q Consensus 176 A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~---~~fV~w~~~~~s----~eg~~~~~~y~~~~~P~l~ii~p 248 (444)
+...+++++|++.+++|..|..+.. .+.++.+ ..+++. +.+. .+...++..|++..+|+++++.
T Consensus 25 ~~~~~~~~~v~f~a~wC~~C~~~~p------~l~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~~- 95 (118)
T 1zma_A 25 ALDKKETATFFIGRKTCPYCRKFAG------TLSGVVAETKAHIYFI--NSEEPSQLNDLQAFRSRYGIPTVPGFVHIT- 95 (118)
T ss_dssp HHHTTCCEEEEEECTTCHHHHHHHH------HHHHHHHHHCCCCEEE--ETTCGGGHHHHHHHHHHHTCCSSCEEEEEE-
T ss_pred HHhCCCeEEEEEECCCCccHHHHHH------HHHHHHHhcCCeEEEE--ECCCcCcHHHHHHHHHHcCCCCCCeEEEEE-
Confidence 3456899999999999999999853 3444443 345554 4433 2345788999999999999885
Q ss_pred CCCeeeEEEeCCCChHHHHHHHH
Q 013379 249 ITGQKMRSWCGMVQPESLLEDLV 271 (444)
Q Consensus 249 ~tg~~v~~~~G~~~~~~~l~~L~ 271 (444)
.|+.+.++.|..++++|...|.
T Consensus 96 -~G~~~~~~~G~~~~~~l~~~l~ 117 (118)
T 1zma_A 96 -DGQINVRCDSSMSAQEIKDFAG 117 (118)
T ss_dssp -TTEEEEECCTTCCHHHHHHHHT
T ss_pred -CCEEEEEecCCCCHHHHHHHhh
Confidence 6988888999999888877653
No 76
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=98.02 E-value=5e-05 Score=65.15 Aligned_cols=95 Identities=13% Similarity=0.167 Sum_probs=72.0
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecCChh--------------------HHHHHHHcCC
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSE--------------------GKKVCTYYKL 237 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~s~e--------------------g~~~~~~y~~ 237 (444)
.+|++||++.+++|..|..+...+ ..+.+-+. .++.+..++.+... ...++..|++
T Consensus 25 ~gk~vlv~F~~~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 101 (151)
T 2f9s_A 25 KGKGVFLNFWGTWCEPCKKEFPYM---ANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDV 101 (151)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCC
Confidence 579999999999999998765332 12233333 36777777775432 2357788999
Q ss_pred CCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 238 DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 238 ~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
..+|+++||++ .|.++.++.|..+.+++...|...+...
T Consensus 102 ~~~P~~~lid~-~G~i~~~~~G~~~~~~l~~~l~~ll~~~ 140 (151)
T 2f9s_A 102 SPLPTTFLINP-EGKVVKVVTGTMTESMIHDYMNLIKPGE 140 (151)
T ss_dssp CSSCEEEEECT-TSEEEEEEESCCCHHHHHHHHHHHSCC-
T ss_pred CCCCeEEEECC-CCcEEEEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999997 7999999999999999999888887644
No 77
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.00 E-value=3e-05 Score=71.89 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=80.9
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~i 245 (444)
..+|++.+ .+.+|++||++++++|..|..+...+ +.+.+.+..++.+..++.+.. ..++..|++..+|+++|
T Consensus 19 ~~~f~~~v---~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~--~~l~~~~~v~~~Pt~~~ 90 (222)
T 3dxb_A 19 DDSFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLLL 90 (222)
T ss_dssp TTTHHHHH---TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTC--TTTGGGGTCCSBSEEEE
T ss_pred HHHHHHHH---HhcCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhcCCcEEEEEECCCC--HHHHHHcCCCcCCEEEE
Confidence 34666544 45799999999999999999986433 445555556688887777653 35788999999999999
Q ss_pred EeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 246 VDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 246 i~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
+. .|+.+.++.|..+.+.|...|...+...
T Consensus 91 ~~--~G~~~~~~~G~~~~~~l~~~l~~~l~~~ 120 (222)
T 3dxb_A 91 FK--NGEVAATKVGALSKGQLKEFLDANLAGS 120 (222)
T ss_dssp EE--TTEEEEEEESCCCHHHHHHHHHHHSCCS
T ss_pred EE--CCeEEEEeccccChHHHHHHHHhhcccc
Confidence 96 7999989999999999999999888654
No 78
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=97.99 E-value=6.1e-05 Score=69.01 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=79.7
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii 246 (444)
.+|+.++ ..+|++||++++++|..|..+...+ ..+.+.+..++.+..++.+. ...++..|++..+|+++|+
T Consensus 105 ~~f~~~~----~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~ 175 (210)
T 3apq_A 105 REFDAAV----NSGELWFVNFYSPGCSHCHDLAPTW---REFAKEVDGLLRIGAVNCGD--DRMLCRMKGVNSYPSLFIF 175 (210)
T ss_dssp HHHHHHH----HHSCCEEEEEECTTCHHHHHHHHHH---HHHHHHTBTTBEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHH----ccCCcEEEEEeCCCChhHHHHHHHH---HHHHHHhcCceEEEEEECCc--cHHHHHHcCCCcCCeEEEE
Confidence 3555554 6789999999999999999986533 45555556678888877754 4568899999999999999
Q ss_pred eCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 247 DPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 247 ~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
..|+.+.++.|..+.+.|...|.+.+...
T Consensus 176 --~~G~~~~~~~G~~~~~~l~~~i~~~l~~~ 204 (210)
T 3apq_A 176 --RSGMAAVKYNGDRSKESLVAFAMQHVRST 204 (210)
T ss_dssp --CTTSCCEECCSCCCHHHHHHHHHHHHHCC
T ss_pred --ECCCceeEecCCCCHHHHHHHHHHhCccc
Confidence 47888889999999999999998887643
No 79
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=97.98 E-value=3.3e-05 Score=63.83 Aligned_cols=101 Identities=8% Similarity=0.012 Sum_probs=76.4
Q ss_pred HHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCC
Q 013379 170 EKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI 249 (444)
Q Consensus 170 ~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~ 249 (444)
++......+.+|++||++++++|..|..+...+ ..+.+.+..++.+..++.+. ...++..|++..+|++++++.
T Consensus 11 ~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~- 84 (122)
T 3aps_A 11 QTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEF---ELLARMIKGKVRAGKVDCQA--YPQTCQKAGIKAYPSVKLYQY- 84 (122)
T ss_dssp HHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEEE-
T ss_pred HHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEeCcC--CHHHHHHcCCCccceEEEEeC-
Confidence 333344557789999999999999999986543 44555566688888877765 346888999999999999975
Q ss_pred CCeeeEEEeCC----CChHHHHHHHHhhhhcC
Q 013379 250 TGQKMRSWCGM----VQPESLLEDLVPFMDGG 277 (444)
Q Consensus 250 tg~~v~~~~G~----~~~~~~l~~L~~~l~~~ 277 (444)
.|. +.++.|. .+++.+...|...+...
T Consensus 85 ~~~-~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 115 (122)
T 3aps_A 85 ERA-KKSIWEEQINSRDAKTIAALIYGKLETL 115 (122)
T ss_dssp EGG-GTEEEEEEECCSCHHHHHHHHHHHHHCC
T ss_pred CCc-cceeeccccCcCCHHHHHHHHHHHHHhh
Confidence 333 5566665 78999999888887644
No 80
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=97.97 E-value=9.3e-05 Score=64.19 Aligned_cols=97 Identities=16% Similarity=0.258 Sum_probs=74.3
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
..|++++..+ .+|++||+++.++|..|..+.. .+.++.+ .++.|..++.+. ...++..|++..+|+++
T Consensus 21 ~~~~~~~~~~--~~~~vvv~F~a~wC~~C~~~~p------~l~~l~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~ 90 (153)
T 2wz9_A 21 GQFEELLRLK--AKSLLVVHFWAPWAPQCAQMNE------VMAELAKELPQVSFVKLEAEG--VPEVSEKYEISSVPTFL 90 (153)
T ss_dssp HHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETTT--SHHHHHHTTCCSSSEEE
T ss_pred HHHHHHHHhc--CCCeEEEEEECCCCHhHHHHHH------HHHHHHHHcCCeEEEEEECCC--CHHHHHHcCCCCCCEEE
Confidence 4555555432 4899999999999999999853 3344433 368888877754 45688999999999999
Q ss_pred EEeCCCCeeeEEEeCCCChHHHHHHHHhhhhc
Q 013379 245 VVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
|++ .|+.+.++.|. +++++...|.+.+..
T Consensus 91 ~~~--~G~~~~~~~G~-~~~~l~~~i~~~l~~ 119 (153)
T 2wz9_A 91 FFK--NSQKIDRLDGA-HAPELTKKVQRHASS 119 (153)
T ss_dssp EEE--TTEEEEEEESS-CHHHHHHHHHHHSCT
T ss_pred EEE--CCEEEEEEeCC-CHHHHHHHHHHHhcc
Confidence 998 79988889995 777888888877654
No 81
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=97.96 E-value=1.2e-05 Score=67.52 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=70.5
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCch--------------hhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHH
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEF--------------SSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVC 232 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~--------------~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~ 232 (444)
.+|+..+ .+.+|++||++++++|. .|..+... | +.+.+-+..++.+..++.+.. ..++
T Consensus 11 ~~f~~~~---~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~-~--~~l~~~~~~~~~~~~vd~d~~--~~l~ 82 (123)
T 1oaz_A 11 DSFDTDV---LKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPI-L--DEIADEYQGKLTVAKLNIDQN--PGTA 82 (123)
T ss_dssp TTHHHHT---TSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHH-H--TTC-------CEEEEEETTSC--TTTG
T ss_pred hhHHHHH---HhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHH-H--HHHHHHhcCCeEEEEEECCCC--HHHH
Confidence 4555443 46789999999999999 77776542 2 223333445688888887653 4578
Q ss_pred HHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 233 TYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 233 ~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
..|++..+|+++++ .+|+.+.++.|..+++++...|.+.+
T Consensus 83 ~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~~l 122 (123)
T 1oaz_A 83 PKYGIRGIPTLLLF--KNGEVAATKVGALSKGQLKEFLDANL 122 (123)
T ss_dssp GGGTCCBSSEEEEE--ESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred HHcCCCccCEEEEE--ECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 89999999999999 37999989999999988888776543
No 82
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=97.96 E-value=4.7e-05 Score=63.41 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=67.5
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCCh---------------------hHHHHHHHc
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTS---------------------EGKKVCTYY 235 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~---------------------eg~~~~~~y 235 (444)
.+|+++|++.+++|..|..+.. .+.++.+. ++.+..++.+.. ....++..|
T Consensus 24 ~~k~~ll~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 97 (136)
T 1zzo_A 24 LGKPAVLWFWAPWCPTCQGEAP------VVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANF 97 (136)
T ss_dssp TTSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHT
T ss_pred CCCeEEEEEEcCCChhHHHHHH------HHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHc
Confidence 5789999999999999988743 33343332 677777776541 234577889
Q ss_pred CCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 236 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 236 ~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
++..+|+++||++ +|+++ .+.|..+.+++...|...+.
T Consensus 98 ~i~~~P~~~~id~-~g~i~-~~~g~~~~~~l~~~l~~~l~ 135 (136)
T 1zzo_A 98 GVTQQPAYAFVDP-HGNVD-VVRGRMSQDELTRRVTALTS 135 (136)
T ss_dssp TCCSSSEEEEECT-TCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred CCCCCceEEEECC-CCCEE-EEecCCCHHHHHHHHHHHhc
Confidence 9999999999996 68888 88999999999888877653
No 83
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=97.96 E-value=3.4e-05 Score=65.15 Aligned_cols=88 Identities=11% Similarity=0.085 Sum_probs=67.0
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecCCh-----------------------hHHHHHHH
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTS-----------------------EGKKVCTY 234 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~s~-----------------------eg~~~~~~ 234 (444)
.+|++||++.+++|..|..+...+ ..+.+-+. .++.++.++.+.. ....++..
T Consensus 33 ~gk~~ll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (145)
T 3erw_A 33 KGQKTILHFWTSWCPPCKKELPQF---QSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKE 109 (145)
T ss_dssp TTSEEEEEEECSSCHHHHHHHHHH---HHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHh
Confidence 679999999999999998875332 12222222 4677887777541 13467889
Q ss_pred cCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHH
Q 013379 235 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 270 (444)
Q Consensus 235 y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L 270 (444)
|++..+|+++||++ .|+++..+.|..+.++|...|
T Consensus 110 ~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l 144 (145)
T 3erw_A 110 YHIITIPTSFLLNE-KGEIEKTKIGPMTAEQLKEWT 144 (145)
T ss_dssp TTCCEESEEEEECT-TCCEEEEEESCCCHHHHHHHH
T ss_pred cCcCccCeEEEEcC-CCcEEEEEcCCcCHHHHHHhh
Confidence 99999999999996 799999999999998887765
No 84
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=97.96 E-value=4.5e-05 Score=65.62 Aligned_cols=93 Identities=18% Similarity=0.114 Sum_probs=72.7
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh----cCEEEEEeecCChh----------------------HHHHH
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSE----------------------GKKVC 232 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~----~~fV~w~~~~~s~e----------------------g~~~~ 232 (444)
++|++||++..++|..|..+. +.+.++.+ .++.+..++.++.+ ...++
T Consensus 23 ~gk~vlv~F~a~wC~~C~~~~------~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (151)
T 3raz_A 23 KAPVRIVNLWATWCGPCRKEM------PAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFM 96 (151)
T ss_dssp CSSEEEEEEECTTCHHHHHHH------HHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHH
T ss_pred CCCEEEEEEEcCcCHHHHHHH------HHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHH
Confidence 689999999999999998874 33444433 46888888887543 34567
Q ss_pred HHcC--CCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcCC
Q 013379 233 TYYK--LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGP 278 (444)
Q Consensus 233 ~~y~--~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~~ 278 (444)
..|+ +..+|+++||++ .|.++.++.|..+++++...|.......+
T Consensus 97 ~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~l~~~~~ 143 (151)
T 3raz_A 97 KTYGNTVGVLPFTVVEAP-KCGYRQTITGEVNEKSLTDAVKLAHSKCR 143 (151)
T ss_dssp HTTTCCSCCSSEEEEEET-TTTEEEECCSCCCHHHHHHHHHHHHTC--
T ss_pred HHhCCccCCCCEEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHHHhh
Confidence 7788 889999999997 69999999999999999998888776543
No 85
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=97.95 E-value=6.1e-05 Score=62.53 Aligned_cols=90 Identities=14% Similarity=0.259 Sum_probs=66.8
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCC--------------------------hhHHHHH
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--------------------------SEGKKVC 232 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s--------------------------~eg~~~~ 232 (444)
.+|++||++.+++|..|......+ ..+.+-...++.+..++... .....++
T Consensus 21 ~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 97 (138)
T 4evm_A 21 KGKKVYLKFWASWCSICLASLPDT---DEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLL 97 (138)
T ss_dssp TTSEEEEEECCTTCHHHHHHHHHH---HHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHH
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHH
Confidence 579999999999999998775433 22333334567777763211 1123578
Q ss_pred HHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHh
Q 013379 233 TYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 272 (444)
Q Consensus 233 ~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~ 272 (444)
..|++..+|+++||++ .|+++.++.|..+++++...|..
T Consensus 98 ~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ 136 (138)
T 4evm_A 98 ETYGVRSYPTQAFIDK-EGKLVKTHPGFMEKDAILQTLKE 136 (138)
T ss_dssp HHTTCCSSSEEEEECT-TCCEEEEEESCCCHHHHHHHHHH
T ss_pred HHcCcccCCeEEEECC-CCcEEEeecCCCcHHHHHHHHHh
Confidence 8999999999999997 79999999999999988887765
No 86
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=97.93 E-value=5.3e-05 Score=64.88 Aligned_cols=96 Identities=10% Similarity=0.141 Sum_probs=72.8
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecCChhH---------------------HHHHHHcC
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG---------------------KKVCTYYK 236 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~s~eg---------------------~~~~~~y~ 236 (444)
.+|++||++.+++|..|..+...+ ..+.+-+. .++.+..++.+.... ..++..|+
T Consensus 29 ~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 105 (152)
T 2lja_A 29 KGKYIYIDVWATWCGPCRGELPAL---KELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYL 105 (152)
T ss_dssp TTSEEEEEECCSSCCGGGGTHHHH---HHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTT
T ss_pred CCCEEEEEEECCcCHhHHHHhHHH---HHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcC
Confidence 479999999999999998764322 12222222 358888877766432 26788899
Q ss_pred CCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcCC
Q 013379 237 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGP 278 (444)
Q Consensus 237 ~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~~ 278 (444)
+..+|+++||++ +|+++.+..|..+.+++...|...+..+.
T Consensus 106 v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~~~~~~ 146 (152)
T 2lja_A 106 INGIPRFILLDR-DGKIISANMTRPSDPKTAEKFNELLGLEG 146 (152)
T ss_dssp CCSSCCEEEECT-TSCEEESSCCCTTCHHHHHHHHHHHTCCS
T ss_pred cCCCCEEEEECC-CCeEEEccCCCCCHHHHHHHHHHHhcccc
Confidence 999999999997 69998888898899999999988887654
No 87
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.93 E-value=4.4e-05 Score=73.15 Aligned_cols=101 Identities=16% Similarity=0.218 Sum_probs=79.3
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
-..+|++.+ ....+|+++|+++.++|..|..+...+ +.+.+-...+++|..++.+. ...++..|++.++|+++
T Consensus 13 ~~~~f~~~~--~~~~~~~v~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~ 85 (287)
T 3qou_A 13 NESNLQQVL--EQSMTTPVLFYFWSERSQHCLQLTPIL---ESLAAQYNGQFILAKLDCDA--EQMIAAQFGLRAIPTVY 85 (287)
T ss_dssp CTTTHHHHH--TTTTTSCEEEEEECTTCTTTTTTHHHH---HHHHHHHTSSSEEEEEETTT--CHHHHHTTTCCSSSEEE
T ss_pred CHHHHHHHH--HhcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHcCCCeEEEEEeCcc--CHHHHHHcCCCCCCeEE
Confidence 346787755 234589999999999999999986433 34444455679999888764 35789999999999999
Q ss_pred EEeCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 245 VVDPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
++. .|+.+.++.|..+.+.+...|...+
T Consensus 86 ~~~--~G~~~~~~~g~~~~~~l~~~l~~~l 113 (287)
T 3qou_A 86 LFQ--NGQPVDGFQGPQPEEAIRALLDXVL 113 (287)
T ss_dssp EEE--TTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred EEE--CCEEEEEeeCCCCHHHHHHHHHHHc
Confidence 994 7999999999988888888777665
No 88
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=97.92 E-value=8.5e-05 Score=60.53 Aligned_cols=88 Identities=8% Similarity=0.136 Sum_probs=68.2
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeE
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR 255 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~ 255 (444)
.++|+++|++++++|..|..+.. .+.++... ++.+..++.+ +...++..|++..+|+++++ .+|+.+.
T Consensus 17 ~~~~~~vv~f~a~wC~~C~~~~~------~l~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~--~~G~~v~ 86 (110)
T 2l6c_A 17 EGLSDAIVFFHKNLCPHCKNMEK------VLDKFGARAPQVAISSVDSE--ARPELMKELGFERVPTLVFI--RDGKVAK 86 (110)
T ss_dssp TTCSEEEEEEECSSCSTHHHHHH------HHHHHHTTCTTSCEEEEEGG--GCHHHHHHTTCCSSCEEEEE--ESSSEEE
T ss_pred HcCCCEEEEEECCCCHhHHHHHH------HHHHHHHHCCCcEEEEEcCc--CCHHHHHHcCCcccCEEEEE--ECCEEEE
Confidence 46799999999999999999843 33444433 4666665653 45678899999999999999 3799999
Q ss_pred EEeCCCChHHHHHHHHhhhh
Q 013379 256 SWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 256 ~~~G~~~~~~~l~~L~~~l~ 275 (444)
++.|..++++|...|..+..
T Consensus 87 ~~~G~~~~~~l~~~~~~~~~ 106 (110)
T 2l6c_A 87 VFSGIMNPRELQALYASIHH 106 (110)
T ss_dssp EEESCCCHHHHHHHHHTC--
T ss_pred EEcCCCCHHHHHHHHHHHhh
Confidence 99999999998888877654
No 89
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=97.91 E-value=6.1e-05 Score=62.90 Aligned_cols=88 Identities=10% Similarity=0.060 Sum_probs=67.5
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCCh-h-------------------HHHHHHHcC
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTS-E-------------------GKKVCTYYK 236 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~-e-------------------g~~~~~~y~ 236 (444)
.+|+++|++.+++|..|..+.. .+.++.+. ++.++.++.+.. + ...+++.|+
T Consensus 23 ~~k~~lv~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 96 (136)
T 1lu4_A 23 QGKPAVLWFWTPWCPFCNAEAP------SLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYN 96 (136)
T ss_dssp TTSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTT
T ss_pred CCCEEEEEEECCcChhHHHHHH------HHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcC
Confidence 5799999999999999988753 33444332 677777777652 1 345778899
Q ss_pred CCCCcEEEEEeCCCCeeeEEEe---CCCChHHHHHHHHhhh
Q 013379 237 LDSIPVVLVVDPITGQKMRSWC---GMVQPESLLEDLVPFM 274 (444)
Q Consensus 237 ~~~~P~l~ii~p~tg~~v~~~~---G~~~~~~~l~~L~~~l 274 (444)
+..+|+++||++ +|+++ ++. |..+++++...|.+.+
T Consensus 97 i~~~P~~~lid~-~G~i~-~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 97 VPWQPAFVFYRA-DGTST-FVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp CCSSSEEEEECT-TSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred CCCCCEEEEECC-CCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence 999999999997 68888 888 9999999988887654
No 90
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=97.89 E-value=7.4e-05 Score=64.86 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=73.9
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEe
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~ 247 (444)
+|++++. ...+|++||++..++|..|..+...+ ..+.+-+.+++.++.++++. ...++..|++..+|+++++.
T Consensus 13 ~~~~~i~--~~~~k~vlv~F~a~WC~~C~~~~p~l---~~l~~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~ 85 (149)
T 3gix_A 13 EVDQAIK--STAEKVLVLRFGRDEDPVCLQLDDIL---SKTSSDLSKMAAIYLVDVDQ--TAVYTQYFDISYIPSTVFFF 85 (149)
T ss_dssp HHHHHHH--HCCSSEEEEEEECTTSHHHHHHHHHH---HHHHTTTTTTEEEEEEETTT--CCHHHHHTTCCSSSEEEEEE
T ss_pred HHHHHHH--hcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHccCceEEEEEECCc--CHHHHHHcCCCccCeEEEEE
Confidence 3444443 25789999999999999999985322 12222233458999888754 44688999999999999554
Q ss_pred CCCCeee---------EEEeC-CCChHHHHHHHHhhhh
Q 013379 248 PITGQKM---------RSWCG-MVQPESLLEDLVPFMD 275 (444)
Q Consensus 248 p~tg~~v---------~~~~G-~~~~~~~l~~L~~~l~ 275 (444)
.|+.+ .++.| ..+.++|...|...+.
T Consensus 86 --~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~ 121 (149)
T 3gix_A 86 --NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYR 121 (149)
T ss_dssp --TTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHH
T ss_pred --CCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHH
Confidence 68888 88899 8899999888887764
No 91
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=97.85 E-value=0.00022 Score=58.94 Aligned_cols=96 Identities=14% Similarity=0.176 Sum_probs=71.3
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
..+|.+.+.. ..+|+++|++++++|..|+.+... +.++.++ ++.+..++.+. +...++..|++..+|++
T Consensus 25 ~~~~~~~~~~--~~~~~~vv~f~a~wC~~C~~~~~~------l~~~~~~~~~~~~~~vd~~~-~~~~~~~~~~v~~~Pt~ 95 (124)
T 1faa_A 25 KDTFWPIVKA--AGDKPVVLDMFTQWCGPCKAMAPK------YEKLAEEYLDVIFLKLDCNQ-ENKTLAKELGIRVVPTF 95 (124)
T ss_dssp TTTHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEECSS-TTHHHHHHHCCSSSSEE
T ss_pred chhHHHHHHh--cCCCEEEEEEECCcCHhHHHHhHH------HHHHHHHCCCCEEEEEecCc-chHHHHHHcCCCeeeEE
Confidence 4577776653 478999999999999999998643 3443332 47777777653 34668899999999997
Q ss_pred EEEeCCCCeeeEEEeCCCChHHHHHHHHhh
Q 013379 244 LVVDPITGQKMRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 244 ~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~ 273 (444)
+++. +|+.+.++.|.. ++++.+.|.+.
T Consensus 96 ~~~~--~G~~~~~~~G~~-~~~l~~~i~~~ 122 (124)
T 1faa_A 96 KILK--ENSVVGEVTGAK-YDKLLEAIQAA 122 (124)
T ss_dssp EEEE--TTEEEEEEESSC-HHHHHHHHHHH
T ss_pred EEEe--CCcEEEEEcCCC-HHHHHHHHHHh
Confidence 6663 799898999975 77777776654
No 92
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=97.83 E-value=0.00011 Score=62.32 Aligned_cols=88 Identities=10% Similarity=0.028 Sum_probs=69.2
Q ss_pred eEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCC-------hhHHHHHHHcCCCCCcEEEEEeCCCCee
Q 013379 182 WLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDT-------SEGKKVCTYYKLDSIPVVLVVDPITGQK 253 (444)
Q Consensus 182 ~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s-------~eg~~~~~~y~~~~~P~l~ii~p~tg~~ 253 (444)
+++|++..++|..|..+. +.+.++.+. .+.+..++.+. .+...++..|++..+|+++|+. .|++
T Consensus 33 ~vlv~F~a~wC~~C~~~~------p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~~~~--~G~~ 104 (135)
T 3emx_A 33 DAILAVYSKTCPHCHRDW------PQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYK--EGRI 104 (135)
T ss_dssp SEEEEEEETTCHHHHHHH------HHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHHTCCSSSEEEEEE--TTEE
T ss_pred cEEEEEECCcCHhhhHhC------hhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHcCCceeCeEEEEc--CCEE
Confidence 999999999999999984 455666554 36666666644 4567789999999999998887 7999
Q ss_pred eEEEeCCCChHHHHHHHHhhhhcC
Q 013379 254 MRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 254 v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
+.++.|..+.+.+...+...++..
T Consensus 105 v~~~~G~~~~~~~~~~i~~~~~~~ 128 (135)
T 3emx_A 105 VDKLVGATPWSLKVEKAREIYGGE 128 (135)
T ss_dssp EEEEESCCCHHHHHHHHHHHC---
T ss_pred EEEEeCCCCHHHHHHHHHHHhCCC
Confidence 999999999888888888777644
No 93
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=97.81 E-value=0.00027 Score=60.72 Aligned_cols=114 Identities=11% Similarity=0.119 Sum_probs=81.4
Q ss_pred cchHHHHHhhcCCCccCcccCcHHHHHHHHHHcCCeEEEEEeCCCc--hhhHHHHhhccCChhHHHHHh---cCEEEEEe
Q 013379 147 DSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKE--FSSHMLNRDTWANEAVSQTIS---TNFIFWQV 221 (444)
Q Consensus 147 ~~~~~~l~~~f~pp~~~~~~gs~~~A~~~A~~~~K~LlVyl~~~~~--~~~~~f~rdv~~~~~V~~~l~---~~fV~w~~ 221 (444)
++.-++|....|-+ .+-..+|++.+. +.++++||++..++| ..|..+. +-+-++.+ ..+.++.+
T Consensus 5 ~~l~~rl~~~~g~~--~vt~~~F~~~v~---~~~~~vlVdF~A~wCr~gpCk~ia------Pvleela~e~~~~v~~~KV 73 (137)
T 2qsi_A 5 GSLARAAARPNAPT--LVDEATVDDFIA---HSGKIVVLFFRGDAVRFPEAADLA------VVLPELINAFPGRLVAAEV 73 (137)
T ss_dssp ------------CE--EECTTTHHHHHH---TSSSEEEEEECCCTTTCTTHHHHH------HHHHHHHHTSTTTEEEEEE
T ss_pred cHHHHHHHHhcCCc--ccCHhHHHHHHh---cCCCcEEEEEeCCccCCCchhhHH------hHHHHHHHHccCCcEEEEE
Confidence 34555566655543 456789998773 445699999999999 8999884 44444444 45788866
Q ss_pred ecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 222 YDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 222 ~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
++ .+...++..|+|.++|+++++. +|+.+.++.|..+.+++...|...++
T Consensus 74 dv--De~~~la~~ygV~siPTlilFk--dG~~v~~~vG~~~k~~l~~~l~~~l~ 123 (137)
T 2qsi_A 74 AA--EAERGLMARFGVAVCPSLAVVQ--PERTLGVIAKIQDWSSYLAQIGAMLA 123 (137)
T ss_dssp CG--GGHHHHHHHHTCCSSSEEEEEE--CCEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred EC--CCCHHHHHHcCCccCCEEEEEE--CCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 65 5678899999999999999996 79999999999999999888887774
No 94
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=97.81 E-value=0.00026 Score=61.24 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=69.7
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecCCh--hHHHHHH-----------------Hc---
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTS--EGKKVCT-----------------YY--- 235 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~s~--eg~~~~~-----------------~y--- 235 (444)
.+|++||++.+++|..|..+...+ ..+.+-+. .++.++.++.+.. ....+.. .|
T Consensus 33 ~gk~vlv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (165)
T 3or5_A 33 KGKAYIVNFFATWCPPCRSEIPDM---VQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGY 109 (165)
T ss_dssp TTCEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhh
Confidence 579999999999999999875432 22333333 3588888777652 2233332 22
Q ss_pred ---CCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 236 ---KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 236 ---~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
++..+|+++||++ +|+++..+.|..+++++...|...+...
T Consensus 110 ~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 153 (165)
T 3or5_A 110 IDGGITGIPTSFVIDA-SGNVSGVIVGPRSKADFDRIVKMALGAK 153 (165)
T ss_dssp STTCSCSSSEEEEECT-TSBEEEEECSCCCHHHHHHHHHHHHC--
T ss_pred hccCCCCCCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHhhh
Confidence 7889999999996 7999999999999999999999988755
No 95
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=97.81 E-value=3.2e-05 Score=63.16 Aligned_cols=100 Identities=12% Similarity=0.181 Sum_probs=72.6
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh---cCEEEEEeecCChhHHHHHHHcCCCCCc
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDSIP 241 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~---~~fV~w~~~~~s~eg~~~~~~y~~~~~P 241 (444)
-..+|++++ +.+|++||++++++|..|..+...+ ..+.+.+. .++++..++.+. ...++..|++..+|
T Consensus 13 ~~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~P 83 (120)
T 1mek_A 13 RKSNFAEAL----AAHKYLLVEFYAPWCGHCKALAPEY---AKAAGKLKAEGSEIRLAKVDATE--ESDLAQQYGVRGYP 83 (120)
T ss_dssp CTTTHHHHH----HHCSEEEEEEECSSCSTTSTTHHHH---HHHHHTTTTTCCCCBCEEEETTT--CCSSHHHHTCCSSS
T ss_pred chhhHHHHH----ccCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCcEEEEEEcCCC--CHHHHHHCCCCccc
Confidence 345677665 4689999999999999999885432 12333332 257777666654 23578889999999
Q ss_pred EEEEEeCCCCeee--EEEeCCCChHHHHHHHHhhhh
Q 013379 242 VVLVVDPITGQKM--RSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 242 ~l~ii~p~tg~~v--~~~~G~~~~~~~l~~L~~~l~ 275 (444)
+++++. .|+.+ ..+.|..+.+.|...|.+.+.
T Consensus 84 t~~~~~--~g~~~~~~~~~g~~~~~~l~~~l~~~~~ 117 (120)
T 1mek_A 84 TIKFFR--NGDTASPKEYTAGREADDIVNWLKKRTG 117 (120)
T ss_dssp EEEEEE--SSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred EEEEEe--CCCcCCcccccCccCHHHHHHHHHhccC
Confidence 999994 68766 788898899988888776543
No 96
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=97.80 E-value=0.0001 Score=65.47 Aligned_cols=92 Identities=15% Similarity=0.186 Sum_probs=73.1
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCC-hh--------------------HHHHHHHcC
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SE--------------------GKKVCTYYK 236 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s-~e--------------------g~~~~~~y~ 236 (444)
-.+|++||++..++|..|.... +.+.++.+.++.++.++.+. .+ ...++..|+
T Consensus 56 ~~gk~vll~F~a~~C~~C~~~~------~~l~~l~~~~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 129 (176)
T 3kh7_A 56 LKGKPALVNVWGTWCPSCRVEH------PELTRLAEQGVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLG 129 (176)
T ss_dssp GCSSCEEEEEECTTCHHHHHHH------HHHHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHT
T ss_pred hCCCEEEEEEECCcCHHHHHHH------HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcC
Confidence 3478999999999999998763 56777777778888777432 22 134667788
Q ss_pred CCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhc
Q 013379 237 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 237 ~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
+..+|+++||++ +|.++.++.|..+.+++...|...++.
T Consensus 130 v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~ 168 (176)
T 3kh7_A 130 VYGAPETYLIDK-QGIIRHKIVGVVDQKVWREQLAPLYQQ 168 (176)
T ss_dssp CCSSCEEEEECT-TCBEEEEEESCCCHHHHHHHTHHHHHH
T ss_pred CCCCCeEEEECC-CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 999999999997 799999999999999998888888763
No 97
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=97.79 E-value=0.00025 Score=60.69 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=68.9
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecCCh--hH-------------------HHHHHHcC
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTS--EG-------------------KKVCTYYK 236 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~s~--eg-------------------~~~~~~y~ 236 (444)
.+|++||++.+++|..|..+...+ ..+.+-+. .++.++.++.+.. +. ..++..|+
T Consensus 27 ~gk~vll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 103 (154)
T 3kcm_A 27 KGQVVIVNFWATWCPPCREEIPSM---MRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYG 103 (154)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhC
Confidence 679999999999999998875433 22333333 3677777777763 22 23778899
Q ss_pred CCCCcEEEEEeCCCCeeeEEEeCCC--ChHHHHHHHHhhhhcCC
Q 013379 237 LDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPFMDGGP 278 (444)
Q Consensus 237 ~~~~P~l~ii~p~tg~~v~~~~G~~--~~~~~l~~L~~~l~~~~ 278 (444)
+..+|+++||++ .|.++.++.|.. +.+++...|.+......
T Consensus 104 v~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~~ 146 (154)
T 3kcm_A 104 TTGVPETFVIDR-HGVILKKVVGAMEWDHPEVIAFLNNELSKAR 146 (154)
T ss_dssp CCSBCEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHTC-----
T ss_pred CCCCCeEEEECC-CCcEEEEEcCCCccccHHHHHHHHHHHHHhh
Confidence 999999999996 799999999975 66788888887766543
No 98
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=97.79 E-value=8.5e-05 Score=62.96 Aligned_cols=98 Identities=9% Similarity=0.128 Sum_probs=71.0
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~i 245 (444)
..|++++. ...+|++||++..++|..|..+. +.+.++.+. ++++..++.+. ...++..|++..+|++++
T Consensus 29 ~~~~~~l~--~~~~k~vvv~F~a~wC~~C~~~~------p~l~~l~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~ 98 (133)
T 3cxg_A 29 GSLNQVFS--STQNSSIVIKFGAVWCKPCNKIK------EYFKNQLNYYYVTLVDIDVDI--HPKLNDQHNIKALPTFEF 98 (133)
T ss_dssp THHHHHHT--C-CCSEEEEEEECTTCHHHHHTH------HHHHGGGGTEECEEEEEETTT--CHHHHHHTTCCSSSEEEE
T ss_pred hHHHHHHH--hcCCCEEEEEEECCCCHHHHHHH------HHHHHHHHhcCEEEEEEeccc--hHHHHHhcCCCCCCEEEE
Confidence 45655553 23478999999999999999974 333444333 46777666654 456889999999999999
Q ss_pred EeCCCCe--eeEEEeCCCChHHHHHHHHhhhh
Q 013379 246 VDPITGQ--KMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 246 i~p~tg~--~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
+...+|+ ++.++.|. ++++|...|...+.
T Consensus 99 ~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~ 129 (133)
T 3cxg_A 99 YFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL 129 (133)
T ss_dssp EEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred EEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence 8322465 88889998 88888888877654
No 99
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=97.78 E-value=6.7e-06 Score=68.74 Aligned_cols=100 Identities=15% Similarity=0.287 Sum_probs=78.2
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
..+|++++..++..+|+++|++++++|..|..+.. .+.++.+. ++.+..++.+. ...++..|++..+|++
T Consensus 22 ~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~------~l~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt~ 93 (130)
T 1wmj_A 22 KDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAP------VFAEYAKKFPGAVFLKVDVDE--LKEVAEKYNVEAMPTF 93 (130)
T ss_dssp SHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHH------HHHHHHHHCTTBCCEECCTTT--SGGGHHHHTCCSSCCC
T ss_pred HHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHH------HHHHHHHHCCCCEEEEEeccc--hHHHHHHcCCCccceE
Confidence 46799999999999999999999999999998753 34444443 57777666543 3467889999999998
Q ss_pred EEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhc
Q 013379 244 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 244 ~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
+|+ .+|+.+.++.| .+++++...|...+..
T Consensus 94 ~~~--~~g~~~~~~~g-~~~~~l~~~l~~~~~~ 123 (130)
T 1wmj_A 94 LFI--KDGAEADKVVG-ARKDDLQNTIVKHVGA 123 (130)
T ss_dssp CBC--TTTTCCBCCCT-TCTTTHHHHHHHHTSS
T ss_pred EEE--eCCeEEEEEeC-CCHHHHHHHHHHHHhc
Confidence 777 47888888888 4778888888777653
No 100
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=97.76 E-value=0.00011 Score=63.13 Aligned_cols=90 Identities=18% Similarity=0.246 Sum_probs=69.0
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCCh---------------------hHHHHHHHcC
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS---------------------EGKKVCTYYK 236 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~---------------------eg~~~~~~y~ 236 (444)
.+|++||++.+++|..|..+. +.+.++.++ ++.++.++.+.. ....++..|+
T Consensus 41 ~gk~~ll~f~~~~C~~C~~~~------~~l~~l~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 114 (156)
T 1kng_A 41 KGKVSLVNVWASWCVPCHDEA------PLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWG 114 (156)
T ss_dssp TTSCEEEEEECTTCHHHHHHH------HHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTT
T ss_pred CCCEEEEEEEcccCHhHHHHH------HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcC
Confidence 478999999999999998764 445555543 477776665432 1235677899
Q ss_pred CCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 237 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 237 ~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
+..+|+++||++ +|+++.++.|..+.+.+...|...++
T Consensus 115 v~~~P~~~~id~-~G~i~~~~~g~~~~~~l~~~l~~~l~ 152 (156)
T 1kng_A 115 VYGVPETFVVGR-EGTIVYKLVGPITPDNLRSVLLPQME 152 (156)
T ss_dssp CCSSCEEEEECT-TSBEEEEEESCCCHHHHHHTHHHHHH
T ss_pred cCccCeEEEEcC-CCCEEEEEeCCCCHHHHHHHHHHHHH
Confidence 999999999997 69999999999999888888877664
No 101
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=97.76 E-value=8.1e-05 Score=65.08 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=70.1
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCCh---------------------hHHHHHHHcCC
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS---------------------EGKKVCTYYKL 237 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~---------------------eg~~~~~~y~~ 237 (444)
.+|++||++.+++|..|..+. +.+.++.+.++.++.++.+.. ....++..|++
T Consensus 50 ~gk~vll~F~a~~C~~C~~~~------~~l~~l~~~~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 123 (168)
T 2b1k_A 50 QGKPVLLNVWATWCPTCRAEH------QYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 123 (168)
T ss_dssp CSSCEEEEEECTTCHHHHHHH------HHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTC
T ss_pred CCCEEEEEEECCCCHHHHHHH------HHHHHHHHCCCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCc
Confidence 578999999999999998874 456666666777776664321 12356778999
Q ss_pred CCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 238 DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 238 ~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
..+|+++||++ +|.++.++.|..+++.+...|...++
T Consensus 124 ~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~ 160 (168)
T 2b1k_A 124 YGAPETFLIDG-NGIIRYRHAGDLNPRVWEEEIKPLWE 160 (168)
T ss_dssp CSSSEEEEECT-TSBEEEEEESCCCHHHHHHTTHHHHH
T ss_pred cccCEEEEECC-CCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 99999999996 69999999999999888887777665
No 102
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=96.93 E-value=4e-06 Score=66.97 Aligned_cols=92 Identities=22% Similarity=0.232 Sum_probs=68.7
Q ss_pred HHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeee
Q 013379 175 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 254 (444)
Q Consensus 175 ~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v 254 (444)
.+.+.+|+++|++++++|..|+.+...+ ..+.+.+..++.+..++.+ +...++..|++..+|++.++ .+|+.+
T Consensus 14 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~--~~g~~~ 86 (106)
T 2yj7_A 14 EVLKSDKPVLVDFWAPWCGPCRMIAPII---EELAKEYEGKVKVVKVNVD--ENPNTAAQYGIRSIPTLLLF--KNGQVV 86 (106)
Confidence 3456789999999999999999885433 3344444456777755554 45568899999999999998 378888
Q ss_pred EEEeCCCChHHHHHHHHhh
Q 013379 255 RSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 255 ~~~~G~~~~~~~l~~L~~~ 273 (444)
..+.|..+.+++...|.+.
T Consensus 87 ~~~~g~~~~~~l~~~l~~~ 105 (106)
T 2yj7_A 87 DRLVGAQPKEALKERIDKH 105 (106)
Confidence 8888988887777766543
No 103
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=97.74 E-value=0.00018 Score=61.88 Aligned_cols=90 Identities=6% Similarity=0.089 Sum_probs=68.9
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeE---
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR--- 255 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~--- 255 (444)
.+|+++|++..++|..|..+...+ +.+.+-...++.+..++.+.. ..++..|++..+|+++++. .|+.+.
T Consensus 22 ~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~--~~~~~~~~i~~~Pt~~~~~--~G~~v~~~~ 94 (142)
T 1qgv_A 22 EDRVVVIRFGHDWDPTCMKMDEVL---YSIAEKVKNFAVIYLVDITEV--PDFNKMYELYDPCTVMFFF--RNKHIMIDL 94 (142)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTEEEEEEETTTC--CTTTTSSCSCSSCEEEEEE--TTEEEEEEC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCeEEEEEccccC--HHHHHHcCCCCCCEEEEEE--CCcEEEEec
Confidence 589999999999999999986433 244444456799998888653 3478899999999999985 687665
Q ss_pred ------EEeCCCC-hHHHHHHHHhhhh
Q 013379 256 ------SWCGMVQ-PESLLEDLVPFMD 275 (444)
Q Consensus 256 ------~~~G~~~-~~~~l~~L~~~l~ 275 (444)
++.|.++ .++|...|...+.
T Consensus 95 g~~~~~~~~g~~~~~~~l~~~i~~~~~ 121 (142)
T 1qgv_A 95 GTGNNNKINWAMEDKQEMVDIIETVYR 121 (142)
T ss_dssp C------CCSCCSCHHHHHHHHHHHHH
T ss_pred CCCCcceeeeecCcHHHHHHHHHHHHH
Confidence 4556664 8888888888775
No 104
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=97.74 E-value=0.00044 Score=58.95 Aligned_cols=96 Identities=11% Similarity=0.174 Sum_probs=69.1
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecCChh-HH-------------------HHHHHcC
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSE-GK-------------------KVCTYYK 236 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~s~e-g~-------------------~~~~~y~ 236 (444)
-.+|++||++.+++|..|..+...+ ..+.+-+. .++.++.++.+... .. .++..|+
T Consensus 26 ~~gk~vll~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 102 (152)
T 3gl3_A 26 KTGSVVYLDFWASWCGPCRQSFPWM---NQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYG 102 (152)
T ss_dssp GTTSEEEEEEECTTCTHHHHHHHHH---HHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTT
T ss_pred hCCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcC
Confidence 3579999999999999998875432 22333333 34777777776432 11 5678899
Q ss_pred CCCCcEEEEEeCCCCeeeEEEeCCC--ChHHHHHHHHhhhhcC
Q 013379 237 LDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPFMDGG 277 (444)
Q Consensus 237 ~~~~P~l~ii~p~tg~~v~~~~G~~--~~~~~l~~L~~~l~~~ 277 (444)
+..+|+++||++ .|+++.++.|.. +.+++...|.+.+...
T Consensus 103 v~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~ 144 (152)
T 3gl3_A 103 VKGMPTSFLIDR-NGKVLLQHVGFRPADKEALEQQILAALGGN 144 (152)
T ss_dssp CCSSSEEEEECT-TSBEEEEEESCCTTTHHHHHHHHHHHTC--
T ss_pred CCCCCeEEEECC-CCCEEEEEccCCCcCHHHHHHHHHHHHccc
Confidence 999999999997 799999999965 4467888777776544
No 105
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=97.72 E-value=0.00026 Score=57.26 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=69.9
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
..+|.+++.. ..+|++||++++++|..|..+... +.++.+ .++.+..++.+. +...++..|++..+|++
T Consensus 12 ~~~~~~~~~~--~~~~~vlv~f~a~wC~~C~~~~~~------l~~~~~~~~~v~~~~vd~~~-~~~~~~~~~~v~~~Pt~ 82 (111)
T 2pu9_C 12 KDTFWPIVKA--AGDKPVVLDMFTQWCGPSKAMAPK------YEKLAEEYLDVIFLKLDCNQ-ENKTLAKELGIRVVPTF 82 (111)
T ss_dssp TTTHHHHHTT--CTTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEECSS-TTHHHHHHHCCSBSSEE
T ss_pred hHHHHHHHHh--cCCCEEEEEEECCcCHhHHHHCHH------HHHHHHHCCCeEEEEEecCc-chHHHHHHcCCCeeeEE
Confidence 3466665532 258999999999999999998643 333333 247788777753 34578899999999995
Q ss_pred EEEeCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 244 LVVDPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 244 ~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
++ . ..|+.+.++.|. .++++...|..++
T Consensus 83 ~~-~-~~G~~~~~~~G~-~~~~l~~~l~~~~ 110 (111)
T 2pu9_C 83 KI-L-KENSVVGEVTGA-KYDKLLEAIQAAR 110 (111)
T ss_dssp EE-E-SSSSEEEEEESS-CHHHHHHHHHHHH
T ss_pred EE-E-eCCcEEEEEcCC-CHHHHHHHHHHhh
Confidence 54 4 378888889997 4777777776553
No 106
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=97.71 E-value=0.00016 Score=61.14 Aligned_cols=90 Identities=18% Similarity=0.308 Sum_probs=66.9
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHH-h-cCEEEEEeecCChh-----------------------HHHHHH
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-S-TNFIFWQVYDDTSE-----------------------GKKVCT 233 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l-~-~~fV~w~~~~~s~e-----------------------g~~~~~ 233 (444)
.+|++||++.+++|..|..+...+ ..+.+-+ . .++.++.++.+... ...++.
T Consensus 32 ~gk~vll~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 108 (148)
T 3fkf_A 32 RNRYLLLNFWASWCDPQPEANAEL---KRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAK 108 (148)
T ss_dssp TTSEEEEEEECGGGCCCHHHHHHH---HHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHH
T ss_pred CCcEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHH
Confidence 679999999999999998875432 2233333 3 24888888887654 457889
Q ss_pred HcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 234 YYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 234 ~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
.|++..+|+++||++ +|+++.+.. +.+++...|...+.
T Consensus 109 ~~~v~~~P~~~lid~-~G~i~~~~~---~~~~l~~~l~~ll~ 146 (148)
T 3fkf_A 109 QYAILTLPTNILLSP-TGKILARDI---QGEALTGKLKELLK 146 (148)
T ss_dssp HTTCCSSSEEEEECT-TSBEEEESC---CHHHHHHHHHHHC-
T ss_pred hcCCCCcCEEEEECC-CCeEEEecC---CHHHHHHHHHHHHc
Confidence 999999999999997 688776654 77888877776653
No 107
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=97.71 E-value=0.00033 Score=62.13 Aligned_cols=93 Identities=12% Similarity=0.193 Sum_probs=67.0
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCE------EEEEeecCC--hh-HHHHHHH--------------
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNF------IFWQVYDDT--SE-GKKVCTY-------------- 234 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~f------V~w~~~~~s--~e-g~~~~~~-------------- 234 (444)
.+|++||++..++|..|......+ ..+.+-+. .++ .++.++.+. .+ ...++..
T Consensus 58 ~gk~vlv~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 134 (183)
T 3lwa_A 58 ENQVVILNAWGQWCAPCRSESDDL---QIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFM 134 (183)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCG
T ss_pred CCCEEEEEEECCcCHhHHHHHHHH---HHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcch
Confidence 579999999999999998765332 22333333 336 788888766 32 3344433
Q ss_pred -------cCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 235 -------YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 235 -------y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
|++..+|+++||++ .|+++.++.|..+++++...|...+.
T Consensus 135 ~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~ 181 (183)
T 3lwa_A 135 TAASLGGVPASVIPTTIVLDK-QHRPAAVFLREVTSKDVLDVALPLVD 181 (183)
T ss_dssp GGGGTTTCCTTCCSEEEEECT-TSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCCCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence 35678999999997 79999999999999999988887764
No 108
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=97.70 E-value=0.00074 Score=58.05 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=71.5
Q ss_pred HHHHcCCeEEEEEeCCCchhhHH-HHhhccCChhHHHHHh----cCEEEEEeecC-------ChhH--------------
Q 013379 175 AASVQDKWLLVNLQSTKEFSSHM-LNRDTWANEAVSQTIS----TNFIFWQVYDD-------TSEG-------------- 228 (444)
Q Consensus 175 ~A~~~~K~LlVyl~~~~~~~~~~-f~rdv~~~~~V~~~l~----~~fV~w~~~~~-------s~eg-------------- 228 (444)
.+.-.+|++||++..++|..|.. +. +.+.++.+ .++.++.++.+ +.+.
T Consensus 25 l~~~~gk~vlv~F~a~~C~~C~~e~~------~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (160)
T 3lor_A 25 NEDLRGKVVVVEVFQMLCPGCVNHGV------PQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPV 98 (160)
T ss_dssp HHHHTTSEEEEEEECTTCHHHHHTHH------HHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCE
T ss_pred HHHhCCCEEEEEEEcCCCcchhhhhh------HHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcE
Confidence 34446899999999999999976 22 34444443 35888877752 2221
Q ss_pred -----H------HHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhc
Q 013379 229 -----K------KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 229 -----~------~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
. .++..|++..+|+++||++ .|.++.++.|..+.+++...|...+..
T Consensus 99 ~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~ 156 (160)
T 3lor_A 99 AVDMPREGQRIPSTMKKYRLEGTPSIILADR-KGRIRQVQFGQVDDFVLGLLLGSLLSE 156 (160)
T ss_dssp EEECCCTTCSSCHHHHHTTCCSSSEEEEECT-TSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred EECCccccchhhhHHHhcccCccceEEEECC-CCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence 1 2778899999999999997 699999999999999999988888764
No 109
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=97.68 E-value=0.00029 Score=60.35 Aligned_cols=90 Identities=18% Similarity=0.172 Sum_probs=68.4
Q ss_pred CeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeec---CCh----------------------hHHHHHHH
Q 013379 181 KWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYD---DTS----------------------EGKKVCTY 234 (444)
Q Consensus 181 K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~---~s~----------------------eg~~~~~~ 234 (444)
|++||++.+++|..|..+...+ .++.++ ++.++.++. ++. ....++..
T Consensus 31 k~vll~f~~~~C~~C~~~~~~l------~~l~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 104 (154)
T 3ia1_A 31 KPAVIVFWASWCTVCKAEFPGL------HRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAAR 104 (154)
T ss_dssp SSEEEEEECTTCHHHHHHHHHH------HHHHHHHCCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTT
T ss_pred CeEEEEEEcccChhHHHHHHHH------HHHHHHcCCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHH
Confidence 8899999999999998875433 332222 555555555 221 45677889
Q ss_pred cCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 235 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 235 y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
|++..+|+++||++ .|+++..+.|..+++++...|.+.....
T Consensus 105 ~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~~~~~ 146 (154)
T 3ia1_A 105 FKVLGQPWTFVVDR-EGKVVALFAGRAGREALLDALLLAGADL 146 (154)
T ss_dssp SSBCSSCEEEEECT-TSEEEEEEESBCCHHHHHHHHHHTTCCC
T ss_pred hCCCcccEEEEECC-CCCEEEEEcCCCCHHHHHHHHHhccCcc
Confidence 99999999999996 7999999999999999999888876543
No 110
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.68 E-value=0.00022 Score=60.94 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=71.2
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecC--Ch-------------------hHHHHHHHc
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDD--TS-------------------EGKKVCTYY 235 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~--s~-------------------eg~~~~~~y 235 (444)
-.+|++||++.+++|..|..+...+ ..+.+-+. .++.++.++.+ +. ....++..|
T Consensus 26 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 102 (153)
T 2l5o_A 26 LQGKVTLINFWFPSCPGCVSEMPKI---IKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAF 102 (153)
T ss_dssp HTTCEEEEEEECTTCTTHHHHHHHH---HHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHH
T ss_pred hCCCEEEEEEECCCCccHHHHHHHH---HHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHc
Confidence 3689999999999999998775332 12222233 35777666532 21 123577889
Q ss_pred CCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 236 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 236 ~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
++..+|+++||++ +|+++..+.|..+.+.+...|...+...
T Consensus 103 ~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~ 143 (153)
T 2l5o_A 103 GTQVYPTSVLIGK-KGEILKTYVGEPDFGKLYQEIDTAWRNS 143 (153)
T ss_dssp TCCSSSEEEEECS-SSCCCEEEESSCCHHHHHHHHHHHHHCC
T ss_pred CCCccCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence 9999999999997 6998889999999999999999988754
No 111
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=97.68 E-value=0.0002 Score=62.83 Aligned_cols=97 Identities=8% Similarity=0.078 Sum_probs=75.0
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh---cCEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~---~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
.+|++++.. +..|+++|.+..+||.+|..+. |-+.++-. +..+|+.+|++. ...++..|++.+.|++
T Consensus 30 ~~f~~~v~~--~~~k~VVVdF~A~WCgPCk~m~------PvleelA~e~~~~v~f~kVDVDe--~~e~a~~y~V~siPT~ 99 (160)
T 2av4_A 30 WAVDQAIVN--EDERLVCIRFGHDYDPDCMKMD------ELLYKVADDIKNFCVIYLVDITE--VPDFNTMYELYDPVSV 99 (160)
T ss_dssp HHHHHHHHH--CSSSEEEEEEECTTSHHHHHHH------HHHHHHHHHHTTTEEEEEEETTT--CCTTTTTTTCCSSEEE
T ss_pred HHHHHHHHh--cCCCEEEEEEECCCChhHHHHH------HHHHHHHHHccCCcEEEEEECCC--CHHHHHHcCCCCCCEE
Confidence 356666632 5789999999999999999984 43444433 458899888864 4468999999999999
Q ss_pred EEEeCCCCeee--E-------EEeCCCC-hHHHHHHHHhhhh
Q 013379 244 LVVDPITGQKM--R-------SWCGMVQ-PESLLEDLVPFMD 275 (444)
Q Consensus 244 ~ii~p~tg~~v--~-------~~~G~~~-~~~~l~~L~~~l~ 275 (444)
+++- +|+.+ . ++.|..+ .++|++.|..++.
T Consensus 100 ~fFk--~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r 139 (160)
T 2av4_A 100 MFFY--RNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFR 139 (160)
T ss_dssp EEEE--TTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHH
T ss_pred EEEE--CCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHH
Confidence 9886 58776 5 7889876 8889988887764
No 112
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=97.68 E-value=0.00027 Score=60.84 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=69.9
Q ss_pred cCCeEEEEEeCCCchhhHHH-HhhccCChhHHHHHh----cCEEEEEeecC-------ChhH------------------
Q 013379 179 QDKWLLVNLQSTKEFSSHML-NRDTWANEAVSQTIS----TNFIFWQVYDD-------TSEG------------------ 228 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f-~rdv~~~~~V~~~l~----~~fV~w~~~~~-------s~eg------------------ 228 (444)
.+|++||++..++|..|... . +.+.++.+ .++.++.++.+ +.+.
T Consensus 27 ~gk~vlv~f~a~wC~~C~~~~~------~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 100 (158)
T 3eyt_A 27 RGKVIVIEAFQMLCPGCVMHGI------PLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQ 100 (158)
T ss_dssp TTSEEEEEEECTTCHHHHHTHH------HHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEEC
T ss_pred CCCEEEEEEECCcCcchhhhhh------HHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcC
Confidence 57999999999999999873 2 34444443 46777777753 2111
Q ss_pred --H----HHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhc
Q 013379 229 --K----KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 229 --~----~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
. .++..|++..+|+++||++ .|.++.++.|..+.+++...|...+..
T Consensus 101 ~~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~ 153 (158)
T 3eyt_A 101 PGDGAMPRTMAAYQMRGTPSLLLIDK-AGDLRAHHFGDVSELLLGAEIATLLGE 153 (158)
T ss_dssp CCSSSSCHHHHHTTCCSSSEEEEECT-TSEEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred ccchhhHHHHHHcCCCCCCEEEEECC-CCCEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 1 5788999999999999997 799999999999999999988888763
No 113
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=97.66 E-value=8.6e-05 Score=62.92 Aligned_cols=93 Identities=11% Similarity=0.103 Sum_probs=67.8
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecCChhH--HH---------------------HHHH
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG--KK---------------------VCTY 234 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~s~eg--~~---------------------~~~~ 234 (444)
.+|++||++.+++|..|..+...+- .+.+-+. .++.++.++.+.... .. ++..
T Consensus 30 ~gk~vll~f~~~~C~~C~~~~~~l~---~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 106 (148)
T 3hcz_A 30 QAKYTILFFWDSQCGHCQQETPKLY---DWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKIT 106 (148)
T ss_dssp CCSEEEEEEECGGGCTTCSHHHHHH---HHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHH
T ss_pred CCCEEEEEEECCCCccHHHHHHHHH---HHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHh
Confidence 5799999999999999987643221 1222233 348888887764322 11 7788
Q ss_pred cCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 235 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 235 y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
|++..+|+++||++ .|.++.++.|..+.++++..|.+.+.
T Consensus 107 ~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~~l~~l~~~l~ 146 (148)
T 3hcz_A 107 YDIYATPVLYVLDK-NKVIIAKRIGYENLDDFLVQYEKSLK 146 (148)
T ss_dssp HCCCSSCEEEEECT-TCBEEEESCCGGGHHHHHHHHHHHHH
T ss_pred cCcCCCCEEEEECC-CCcEEEecCCHHHHHHHHHHHHHHhc
Confidence 99999999999997 79999888888778888888776543
No 114
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=97.66 E-value=0.00043 Score=57.68 Aligned_cols=95 Identities=9% Similarity=0.014 Sum_probs=69.8
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHH---H-----hcCEEEEEeecCChhHHHHHHHcCC
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQT---I-----STNFIFWQVYDDTSEGKKVCTYYKL 237 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~---l-----~~~fV~w~~~~~s~eg~~~~~~y~~ 237 (444)
..+|++.+. +.+|++||+++.++|..|+.+.. .+.++ + ..++.+..++.+. ...++..|++
T Consensus 22 ~~~f~~~~~---~~~~~vlv~F~a~wC~~C~~~~p------~~~~la~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v 90 (127)
T 3h79_A 22 DETFDSIVM---DPEKDVFVLYYVPWSRHSVAAMR------LWDDLSMSQSQKRNHLTFVAARIDGEK--YPDVIERMRV 90 (127)
T ss_dssp TTTHHHHHT---CTTCEEEEEEECTTCHHHHHHHH------HHHHHHHHHHTSTTTTTEEEEEEETTT--CHHHHHHTTC
T ss_pred hhhHHHHHh---CCCCCEEEEEECCccHHHHHHhH------HHHHHHHHHHhcccCCCeEEEEEEccc--cHhHHHhcCC
Confidence 456766654 45899999999999999999853 33333 1 2468888777754 4678999999
Q ss_pred CCCcEEEEEeCCCCee-eEEEeCCCChHHHHHHHHh
Q 013379 238 DSIPVVLVVDPITGQK-MRSWCGMVQPESLLEDLVP 272 (444)
Q Consensus 238 ~~~P~l~ii~p~tg~~-v~~~~G~~~~~~~l~~L~~ 272 (444)
..||++.++.+ .+.. .....|..+.+.|...|.+
T Consensus 91 ~~~Pt~~~~~~-g~~~~~~~~~G~~~~~~l~~~i~~ 125 (127)
T 3h79_A 91 SGFPTMRYYTR-IDKQEPFEYSGQRYLSLVDSFVFQ 125 (127)
T ss_dssp CSSSEEEEECS-SCSSSCEECCSCCCHHHHHHHHHH
T ss_pred ccCCEEEEEeC-CCCCCceEecCCccHHHHHHHHHh
Confidence 99999999974 2232 2467798898888877654
No 115
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=97.63 E-value=0.00064 Score=58.27 Aligned_cols=91 Identities=20% Similarity=0.301 Sum_probs=65.7
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecCChh-----------------------HHHHHHH
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSE-----------------------GKKVCTY 234 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~s~e-----------------------g~~~~~~ 234 (444)
.+|++||++..++|..|..+...+ ..+.+-+. .++.++.++.+... ...++..
T Consensus 28 ~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 104 (152)
T 2lrn_A 28 KGKYVLVDFWFAGCSWCRKETPYL---LKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLES 104 (152)
T ss_dssp TTSEEEEEEECTTCTTHHHHHHHH---HHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHH
T ss_pred CCCEEEEEEECCCChhHHHHHHHH---HHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHH
Confidence 579999999999999998764332 12333233 35888888877532 4678889
Q ss_pred cCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhc
Q 013379 235 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 235 y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
|++..+|+++||++ +|+++.+. ++++++...|...+..
T Consensus 105 ~~v~~~P~~~lid~-~G~i~~~~---~~~~~l~~~l~~l~~~ 142 (152)
T 2lrn_A 105 YCIVGFPHIILVDP-EGKIVAKE---LRGDDLYNTVEKFVNG 142 (152)
T ss_dssp TTCCSSCEEEEECT-TSEEEEEC---CCTTHHHHHHHHHHTS
T ss_pred hCCCcCCeEEEECC-CCeEEEee---CCHHHHHHHHHHHHhh
Confidence 99999999999997 68887765 3456666666666553
No 116
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=97.59 E-value=0.00063 Score=58.77 Aligned_cols=95 Identities=15% Similarity=0.198 Sum_probs=68.7
Q ss_pred cCCeEEEEEeCCCchh-hHHHHhhccCChhHHHHHhc-----CEEEEEeecCC----h----------------------
Q 013379 179 QDKWLLVNLQSTKEFS-SHMLNRDTWANEAVSQTIST-----NFIFWQVYDDT----S---------------------- 226 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~-~~~f~rdv~~~~~V~~~l~~-----~fV~w~~~~~s----~---------------------- 226 (444)
.+||+||++..++|.. |......+ ..+.+-+++ ++.++.++.+. +
T Consensus 22 ~gk~vll~f~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d 98 (164)
T 2ggt_A 22 LGQWLLIYFGFTHCPDVCPEELEKM---IQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTRE 98 (164)
T ss_dssp TTCEEEEEEECTTCSSHHHHHHHHH---HHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHH
T ss_pred CCCEEEEEEEeCCCCchhHHHHHHH---HHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHH
Confidence 4799999999999987 87653221 123333332 66666666653 1
Q ss_pred hHHHHHHHcCCCCCc---------------EEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 227 EGKKVCTYYKLDSIP---------------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 227 eg~~~~~~y~~~~~P---------------~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
....+++.|++...| .++||++ .|.++.++.|..+++++...|...+..+
T Consensus 99 ~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~ 163 (164)
T 2ggt_A 99 EVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGP-DGEFLDYFGQNKRKGEIAASIATHMRPY 163 (164)
T ss_dssp HHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECT-TSCEEEEEETTCCHHHHHHHHHHHHGGG
T ss_pred HHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECC-CCeEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 123477889998889 8999997 6999999999999999999998887654
No 117
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=97.59 E-value=0.00016 Score=59.47 Aligned_cols=89 Identities=11% Similarity=0.116 Sum_probs=68.1
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-----CEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCe
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-----NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ 252 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-----~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~ 252 (444)
..+|++||++++++|..|+.+...+ ..+.+.+.. ++.+..++.+..+ ++. ++..+|+++++++ .|+
T Consensus 23 ~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~v~~~~vd~~~~~---~~~--~v~~~Pt~~~~~~-~~~ 93 (121)
T 2djj_A 23 DDTKDVLIEFYAPWCGHCKALAPKY---EELGALYAKSEFKDRVVIAKVDATAND---VPD--EIQGFPTIKLYPA-GAK 93 (121)
T ss_dssp CTTSCEEEEEECSSCTTHHHHHHHH---HHHHHHHTTSSCTTSSEEEEEETTTSC---CSS--CCSSSSEEEEECS-SCT
T ss_pred cCCCCEEEEEECCCCHhHHHhhHHH---HHHHHHHhhcccCCceEEEEEECcccc---ccc--ccCcCCeEEEEeC-cCC
Confidence 4679999999999999999997543 355555554 7888888887654 444 8999999999985 344
Q ss_pred e-eEEEeCCCChHHHHHHHHhhhh
Q 013379 253 K-MRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 253 ~-v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
+ +.++.|..+.++|...|.+.+.
T Consensus 94 ~~~~~~~G~~~~~~l~~~i~~~~~ 117 (121)
T 2djj_A 94 GQPVTYSGSRTVEDLIKFIAENGK 117 (121)
T ss_dssp TSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred CCceEecCCCCHHHHHHHHHhccC
Confidence 3 6678898899888888776643
No 118
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=97.59 E-value=0.00048 Score=59.54 Aligned_cols=91 Identities=14% Similarity=0.186 Sum_probs=67.6
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecCC-----------------hhHHHHHHHcCCCCC
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDT-----------------SEGKKVCTYYKLDSI 240 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~s-----------------~eg~~~~~~y~~~~~ 240 (444)
++|++||++.+++|..|..+...+ ..+.+-+. .++.++.++.+. .....++..|++..+
T Consensus 40 ~gk~vll~F~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 116 (158)
T 3hdc_A 40 RGKIVLVNFWASWCPYCRDEMPSM---DRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRL 116 (158)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSS
T ss_pred CCCEEEEEEECCcCHHHHHHHHHH---HHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCc
Confidence 579999999999999998765332 12222222 578888887765 113468899999999
Q ss_pred cEEEEEeCCCCeeeEEEeCCC--ChHHHHHHHHhh
Q 013379 241 PVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPF 273 (444)
Q Consensus 241 P~l~ii~p~tg~~v~~~~G~~--~~~~~l~~L~~~ 273 (444)
|+++||++ .|.++.++.|.. +..++++.+.+-
T Consensus 117 P~~~lid~-~G~i~~~~~G~~~~~~~~~~~~~~~~ 150 (158)
T 3hdc_A 117 PDTFIVDR-KGIIRQRVTGGIEWDAPKVVSYLKSL 150 (158)
T ss_dssp SEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHTT
T ss_pred ceEEEEcC-CCCEEEEEeCCCccchHHHHHHHHhh
Confidence 99999997 799999999964 566777766644
No 119
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.59 E-value=0.00016 Score=61.48 Aligned_cols=92 Identities=17% Similarity=0.282 Sum_probs=65.8
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
..|.+++..+ ..+|++||+++.++|..|..+.. .+.++.++ ++.|..++.+... ..|++..+|+++
T Consensus 18 ~~~~~~v~~~-~~~~~vvv~f~a~wC~~C~~~~p------~l~~la~~~~~v~~~~vd~~~~~-----~~~~i~~~Pt~~ 85 (135)
T 2dbc_A 18 NQYVNEVTNA-EKDLWVVIHLYRSSVPMCLVVNQ------HLSVLARKFPETKFVKAIVNSCI-----EHYHDNCLPTIF 85 (135)
T ss_dssp HHHHHHTTTC-CSSCEEEEEECCTTCHHHHHHHH------HHHHHHHHCSSEEEEEECCSSSC-----SSCCSSCCSEEE
T ss_pred HHHHHHHHhc-CCCCEEEEEEECCCChHHHHHHH------HHHHHHHHCCCcEEEEEEhhcCc-----ccCCCCCCCEEE
Confidence 3455555433 34589999999999999999853 44444443 5788877776542 689999999999
Q ss_pred EEeCCCCeeeEEEeCCC-------ChHHHHHHHHh
Q 013379 245 VVDPITGQKMRSWCGMV-------QPESLLEDLVP 272 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~~-------~~~~~l~~L~~ 272 (444)
++. .|+++.++.|.. +.+++...|..
T Consensus 86 ~~~--~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~ 118 (135)
T 2dbc_A 86 VYK--NGQIEGKFIGIIECGGINLKLEELEWKLSE 118 (135)
T ss_dssp EES--SSSCSEEEESTTTTTCTTCCHHHHHHHHHH
T ss_pred EEE--CCEEEEEEEeEEeeCCCcCCHHHHHHHHHH
Confidence 985 799999999875 45555554443
No 120
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=0.0002 Score=60.58 Aligned_cols=91 Identities=11% Similarity=0.112 Sum_probs=68.3
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCChhHHHHHHHcCCC------
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLD------ 238 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~eg~~~~~~y~~~------ 238 (444)
..+|++++ +...++++||+++.++|..|..+...+ ..+.+-... ++.+..++.+. ...++..|++.
T Consensus 14 ~~~f~~~~--~~~~~~~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~~~~~ 86 (137)
T 2dj0_A 14 DKTIDEEL--ERDKRVTWIVEFFANWSNDCQSFAPIY---ADLSLKYNCTGLNFGKVDVGR--YTDVSTRYKVSTSPLTK 86 (137)
T ss_dssp TTHHHHHH--HHSTTSCEEEEECCTTCSTTTTTHHHH---HHHHHHHCSSSCEEEECCTTT--CHHHHHHTTCCCCSSSS
T ss_pred HhhHHHHH--hcCCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCeEEEEEeCcc--CHHHHHHccCcccCCcC
Confidence 45788877 455567999999999999999986433 234444443 78888776654 45688999998
Q ss_pred CCcEEEEEeCCCCeeeEEEeCCCChHH
Q 013379 239 SIPVVLVVDPITGQKMRSWCGMVQPES 265 (444)
Q Consensus 239 ~~P~l~ii~p~tg~~v~~~~G~~~~~~ 265 (444)
.+|+++++. .|+.+.++.|..+.+.
T Consensus 87 ~~Pt~~~~~--~G~~~~~~~G~~~~~~ 111 (137)
T 2dj0_A 87 QLPTLILFQ--GGKEAMRRPQIDKKGR 111 (137)
T ss_dssp CSSEEEEES--SSSEEEEESCBCSSSC
T ss_pred CCCEEEEEE--CCEEEEEecCcCchHH
Confidence 999999993 7888888888766543
No 121
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.57 E-value=8e-05 Score=60.11 Aligned_cols=42 Identities=24% Similarity=0.425 Sum_probs=38.8
Q ss_pred hHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013379 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (444)
Q Consensus 9 ~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (444)
+.++.|..++++ ||.+++.|+..|..|||||+.||...|+..
T Consensus 38 d~eekVk~L~Em-tG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 38 DFEEKVKQLIDI-TGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHh-hCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 456789999999 999999999999999999999999999864
No 122
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=97.57 E-value=0.00089 Score=59.40 Aligned_cols=93 Identities=24% Similarity=0.263 Sum_probs=68.7
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecCCh---hHHHHHHHcCCC----------------
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTS---EGKKVCTYYKLD---------------- 238 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~s~---eg~~~~~~y~~~---------------- 238 (444)
.+|++||++..++|..|......+ ..+.+-+. .++.++.++.+.. ....++..|++.
T Consensus 59 ~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 135 (186)
T 1jfu_A 59 RGKTLLVNLWATWCVPCRKEMPAL---DELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDL 135 (186)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHH
T ss_pred CCCEEEEEEEeCCCHhHHHHHHHH---HHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHh
Confidence 579999999999999998765432 23333333 5777887777653 345677777664
Q ss_pred -------CCcEEEEEeCCCCeeeEEEeCCCC--hHHHHHHHHhhhh
Q 013379 239 -------SIPVVLVVDPITGQKMRSWCGMVQ--PESLLEDLVPFMD 275 (444)
Q Consensus 239 -------~~P~l~ii~p~tg~~v~~~~G~~~--~~~~l~~L~~~l~ 275 (444)
.+|+++|||+ .|+++.++.|..+ .+++...|...+.
T Consensus 136 ~~~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~ll~ 180 (186)
T 1jfu_A 136 KAIGRALGMPTSVLVDP-QGCEIATIAGPAEWASEDALKLIRAATG 180 (186)
T ss_dssp HTTTCCSSSSEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHHHHC
T ss_pred ccccccCCCCEEEEECC-CCCEEEEEecCCccCHHHHHHHHHHHhc
Confidence 7999999997 7999999999754 7888888887765
No 123
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=97.57 E-value=0.00028 Score=61.07 Aligned_cols=95 Identities=13% Similarity=0.059 Sum_probs=64.8
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhc---c----------------------CChhHHHHHhc-CEEEEEeecCChhHHHH
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDT---W----------------------ANEAVSQTIST-NFIFWQVYDDTSEGKKV 231 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv---~----------------------~~~~V~~~l~~-~fV~w~~~~~s~eg~~~ 231 (444)
..+|++||++..++|..|..+...+ . ..+.+.++++. ++-+|.+..+ +...+
T Consensus 36 ~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~~ 113 (164)
T 2h30_A 36 KKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTD--NGGTI 113 (164)
T ss_dssp CTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEEC--TTCHH
T ss_pred hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEc--CchHH
Confidence 4679999999999999998764221 0 01123333332 1111111111 12457
Q ss_pred HHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 232 CTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 232 ~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
+..|++..+|+++||++ +|+++.++.|..+.+++...|...+.
T Consensus 114 ~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~~~~ 156 (164)
T 2h30_A 114 AQNLNISVYPSWALIGK-DGDVQRIVKGSINEAQALALIRNPNA 156 (164)
T ss_dssp HHHTTCCSSSEEEEECT-TSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred HHHcCCCccceEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 88999999999999996 69999999999999988888877765
No 124
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.56 E-value=0.00062 Score=56.44 Aligned_cols=97 Identities=7% Similarity=0.077 Sum_probs=71.8
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
..+|++++. + .+||++++++|..|..+...+ ..+.+.+.. ++.+..++.+. ...++..|++..+|+++
T Consensus 14 ~~~f~~~~~-----~-~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~~ 82 (126)
T 1x5e_A 14 DENWRELLE-----G-DWMIEFYAPWCPACQNLQPEW---ESFAEWGEDLEVNIAKVDVTE--QPGLSGRFIINALPTIY 82 (126)
T ss_dssp TTTHHHHTS-----S-EEEEEEECSSCHHHHHHHHHH---HHHHHHHGGGTCEEEEEETTT--CHHHHHHTTCCSSSEEE
T ss_pred HHHHHHHhC-----C-CEEEEEECCCCHHHHHHhHHH---HHHHHHhccCCeEEEEEECcC--CHHHHHHcCCcccCEEE
Confidence 456665442 2 388999999999999986433 234444443 78888877754 34688999999999999
Q ss_pred EEeCCCCeeeEEEeCCCChHHHHHHHHhhhhc
Q 013379 245 VVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
++ ..|+ +.++.|..+.++|...|.+.+..
T Consensus 83 ~~--~~G~-~~~~~G~~~~~~l~~~l~~~~~~ 111 (126)
T 1x5e_A 83 HC--KDGE-FRRYQGPRTKKDFINFISDKEWK 111 (126)
T ss_dssp EE--ETTE-EEECCSCCCHHHHHHHHHTCGGG
T ss_pred EE--eCCe-EEEeecCCCHHHHHHHHHHHhhc
Confidence 99 3688 46788999999988888877643
No 125
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=97.54 E-value=0.00042 Score=64.82 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=84.1
Q ss_pred hhcCCCccC--cccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCChhHH
Q 013379 155 SLYRPPFHL--MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGK 229 (444)
Q Consensus 155 ~~f~pp~~~--~~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s~eg~ 229 (444)
.+|.+..++ +-..+|++.+ ...+|+++|++++++|..|+.+...+ ..+.+-+.. ++.+..++.+..+..
T Consensus 6 ~l~~~~~~v~~l~~~~f~~~i---~~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~~~ 79 (244)
T 3q6o_A 6 ALYSPSDPLTLLQADTVRGAV---LGSRSAWAVEFFASWCGHCIAFAPTW---XALAEDVKAWRPALYLAALDCAEETNS 79 (244)
T ss_dssp CCSCTTSSSEEECTTTHHHHH---SSCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTGGGTTTEEEEEEETTSTTTH
T ss_pred CCCCCCCCceeCChhhHHHHH---hhCCCeEEEEEECCcCHHHHHHHHHH---HHHHHHHHhccCcEEEEEEeCCchhhH
Confidence 345443332 2345666655 35679999999999999999985332 344444444 799999998777788
Q ss_pred HHHHHcCCCCCcEEEEEeCCC----CeeeEEEeCCCChHHHHHHHHhhhhcCC
Q 013379 230 KVCTYYKLDSIPVVLVVDPIT----GQKMRSWCGMVQPESLLEDLVPFMDGGP 278 (444)
Q Consensus 230 ~~~~~y~~~~~P~l~ii~p~t----g~~v~~~~G~~~~~~~l~~L~~~l~~~~ 278 (444)
.++..|++..+|++.++.+.. |..+ .+.| .+++.+...|...+..+.
T Consensus 80 ~l~~~~~v~~~Pt~~~~~~g~~~~~g~~~-~~~g-~~~~~l~~~i~~~l~~~~ 130 (244)
T 3q6o_A 80 AVCRDFNIPGFPTVRFFXAFTXNGSGAVF-PVAG-ADVQTLRERLIDALESHH 130 (244)
T ss_dssp HHHHHTTCCSSSEEEEECTTCCSSSCEEC-CCTT-CCHHHHHHHHHHHHHTCT
T ss_pred HHHHHcCCCccCEEEEEeCCCcCCCCeeE-ecCC-CCHHHHHHHHHHHHHhcc
Confidence 999999999999999998521 2333 5556 589999999999887653
No 126
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=97.52 E-value=0.00081 Score=57.89 Aligned_cols=112 Identities=10% Similarity=0.013 Sum_probs=85.1
Q ss_pred cchHHHHHhhcCCCccCcccCcHHHHHHHHHHcCCeEEEEEeCCC--chhhHHHHhhccCChhHHHHHhc---C-EEEEE
Q 013379 147 DSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTK--EFSSHMLNRDTWANEAVSQTIST---N-FIFWQ 220 (444)
Q Consensus 147 ~~~~~~l~~~f~pp~~~~~~gs~~~A~~~A~~~~K~LlVyl~~~~--~~~~~~f~rdv~~~~~V~~~l~~---~-fV~w~ 220 (444)
++.-++|... +- ..+-..+|++.+ ...+++||++..++ |..|..+. +-+.++.++ . +.|+.
T Consensus 8 ~pl~~rl~~~-g~--~~~t~~~F~~~v----~~~~~vlVdF~a~~crCgpCk~ia------Pvleela~e~~g~~v~~~K 74 (140)
T 2qgv_A 8 DALWQRMLAR-GW--TPVSESRLDDWL----TQAPDGVVLLSSDPKRTPEVSDNP------VMIGELLHEFPDYTWQVAI 74 (140)
T ss_dssp HHHHHHHHHT-TC--EECCHHHHHHHH----HTCSSEEEEECCCTTTCTTTTHHH------HHHHHHHTTCTTSCCEEEE
T ss_pred ChHHHHHHhc-CC--ccCCHHHHHHHH----hCCCCEEEEEeCCcccCCcHHHHH------hHHHHHHHHcCCCeEEEEE
Confidence 4555666555 43 334567888777 26778999999988 88888873 445555543 4 67775
Q ss_pred eecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 221 VYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 221 ~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
++ ..+...++..|+|.++|+++++. +|+.+.++.|..+.+.+...|...+.
T Consensus 75 Vd--vDe~~~lA~~ygV~sIPTlilFk--~G~~v~~~~G~~~k~~l~~~i~~~l~ 125 (140)
T 2qgv_A 75 AD--LEQSEAIGDRFGAFRFPATLVFT--GGNYRGVLNGIHPWAELINLMRGLVE 125 (140)
T ss_dssp CC--HHHHHHHHHHHTCCSSSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred EE--CCCCHHHHHHcCCccCCEEEEEE--CCEEEEEEecCCCHHHHHHHHHHHhc
Confidence 54 45778899999999999999996 79999999999999999999888874
No 127
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=97.52 E-value=0.00071 Score=58.30 Aligned_cols=90 Identities=14% Similarity=0.217 Sum_probs=66.7
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecCChhHH---------------------HHHHHcC
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEGK---------------------KVCTYYK 236 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~s~eg~---------------------~~~~~y~ 236 (444)
.+|++||++..++|..|......+ ..+.+-+. .++.++.++.+..+.. .++..|+
T Consensus 34 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 110 (152)
T 2lrt_A 34 KGKVVLIDFTVYNNAMSAAHNLAL---RELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYN 110 (152)
T ss_dssp GGSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHT
T ss_pred CCCEEEEEEEcCCChhhHHHHHHH---HHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcC
Confidence 468999999999999998754322 12222222 3588888888765431 2778899
Q ss_pred CCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHh
Q 013379 237 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 272 (444)
Q Consensus 237 ~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~ 272 (444)
+..+|+++||++ .|+++.++.|..+.++.+..+.+
T Consensus 111 v~~~P~~~lid~-~G~i~~~~~g~~~~e~~~~~~~~ 145 (152)
T 2lrt_A 111 VTNLPSVFLVNR-NNELSARGENIKDLDEAIKKLLE 145 (152)
T ss_dssp CCSCSEEEEEET-TTEEEEETTTCSCHHHHHHHHHG
T ss_pred cccCceEEEECC-CCeEEEecCCHHHHHHHHHHHHh
Confidence 999999999997 69999999898887777766654
No 128
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00084 Score=65.14 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=79.5
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~i 245 (444)
..+|++++ .+.++++||+++.++|..|+.+...+ +.+.+.+...+.+..++.+..+...++..|++..+|++.+
T Consensus 24 ~~~f~~~i---~~~~~~vlV~F~A~wC~~C~~~~p~~---~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~ 97 (298)
T 3ed3_A 24 PKSFDKAI---HNTNYTSLVEFYAPWCGHCKKLSSTF---RKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMV 97 (298)
T ss_dssp HHHHHHHH---TSSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEE
T ss_pred HHHHHHHH---HhCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEE
Confidence 34566665 35789999999999999999986533 4555555666777778888777788999999999999999
Q ss_pred EeCCCCe-----------------eeEEEeCCCChHHHHHHHHhhhh
Q 013379 246 VDPITGQ-----------------KMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 246 i~p~tg~-----------------~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
+.+ |+ ......|..+.+.++..|...+.
T Consensus 98 ~~~--g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~ 142 (298)
T 3ed3_A 98 FRP--PKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIR 142 (298)
T ss_dssp EEC--CCC-------------CCCEEEECCSCCSHHHHHHHHHTTCC
T ss_pred EEC--CceeecccccccccccccccceeecCCcCHHHHHHHHHHhcc
Confidence 985 43 35567888899999888877654
No 129
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=97.51 E-value=0.0011 Score=60.81 Aligned_cols=93 Identities=13% Similarity=0.102 Sum_probs=70.5
Q ss_pred HHHHcCCeE-EEEEeCCCchhhHHHHhhccCChhHHHHHh----cCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCC
Q 013379 175 AASVQDKWL-LVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI 249 (444)
Q Consensus 175 ~A~~~~K~L-lVyl~~~~~~~~~~f~rdv~~~~~V~~~l~----~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~ 249 (444)
..+..++++ +|++.+++|..|..+...+ ..+..-.. .++.+..++.+ +...++..|++..+|+++++.
T Consensus 128 ~~~~~~~~~~~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~~-- 200 (226)
T 1a8l_A 128 AIRNIDQDVRILVFVTPTCPYCPLAVRMA---HKFAIENTKAGKGKILGDMVEAI--EYPEWADQYNVMAVPKIVIQV-- 200 (226)
T ss_dssp HHTTCCSCEEEEEEECSSCTTHHHHHHHH---HHHHHHHHHTTCCCEEEEEEEGG--GCHHHHHHTTCCSSCEEEEEE--
T ss_pred HHHhcCCCcEEEEEeCCCCCccHHHHHHH---HHHHHhcccccCCcEEEEEEEcc--cCHHHHHhCCCcccCeEEEEe--
Confidence 334555666 9999999999999986433 34444444 47888877765 345688999999999988875
Q ss_pred CCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 250 TGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 250 tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
.|..+.++.|..+.++|...|.+.+
T Consensus 201 ~G~~~~~~~G~~~~~~l~~~l~~~l 225 (226)
T 1a8l_A 201 NGEDRVEFEGAYPEKMFLEKLLSAL 225 (226)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCceeEEEcCCCCHHHHHHHHHHhh
Confidence 7888888999999998888887664
No 130
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=97.47 E-value=0.00083 Score=56.58 Aligned_cols=91 Identities=11% Similarity=0.174 Sum_probs=65.8
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecCCh-hH-HHH--------------------HHHc
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTS-EG-KKV--------------------CTYY 235 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~s~-eg-~~~--------------------~~~y 235 (444)
.+|++||++..++|..|......+-..+.+.+.+. .++.++.++.+.. +. ..+ +..|
T Consensus 26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (142)
T 3ewl_A 26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY 105 (142)
T ss_dssp CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence 57999999999999999987655555566666665 4688888877643 22 112 3379
Q ss_pred CCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhh
Q 013379 236 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 236 ~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~ 273 (444)
++..+|+++||++ .|+++. +..+.+++...|.+.
T Consensus 106 ~v~~~P~~~lid~-~G~i~~---~~~~~~~l~~~l~~~ 139 (142)
T 3ewl_A 106 DIRATPTIYLLDG-RKRVIL---KDTSMEQLIDYLATQ 139 (142)
T ss_dssp CCCSSSEEEEECT-TCBEEE---CSCCHHHHHHHHHC-
T ss_pred CCCCCCeEEEECC-CCCEEe---cCCCHHHHHHHHHHH
Confidence 9999999999997 688765 557777777666543
No 131
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.44 E-value=0.00016 Score=48.26 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=33.7
Q ss_pred HHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 013379 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFY 48 (444)
Q Consensus 10 ~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~ 48 (444)
.++.|.+++++ |-+.+.|+..|..++||++.|++..|
T Consensus 4 ~~~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 4 LNSKIAQLVSM--GFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 35689999999 99999999999999999999998764
No 132
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=97.42 E-value=0.0011 Score=61.20 Aligned_cols=100 Identities=8% Similarity=0.195 Sum_probs=75.7
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcC---EEEEEeecCChhHHHHHHHcCCCCCc
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDDTSEGKKVCTYYKLDSIP 241 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~---fV~w~~~~~s~eg~~~~~~y~~~~~P 241 (444)
-..+|++++ .++|++||+++.++|..|..+...+ ..+.+.+... +.+..++.+. ...++..|++..+|
T Consensus 21 ~~~~~~~~~----~~~~~v~v~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~P 91 (241)
T 3idv_A 21 NDANFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEY---EKIANILKDKDPPIPVAKIDATS--ASVLASRFDVSGYP 91 (241)
T ss_dssp CTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHHTSSSCCCEEEEETTT--CHHHHHHTTCCSSS
T ss_pred cccCHHHHH----hcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhhcCCceEEEEEeccC--CHHHHHhcCCCcCC
Confidence 345666654 5689999999999999999986432 3334444433 8888777654 45789999999999
Q ss_pred EEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhc
Q 013379 242 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 242 ~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
+++++. .|+.+ ...|..+.+++...+...+..
T Consensus 92 t~~~~~--~g~~~-~~~g~~~~~~l~~~i~~~~~~ 123 (241)
T 3idv_A 92 TIKILK--KGQAV-DYEGSRTQEEIVAKVREVSQP 123 (241)
T ss_dssp EEEEEE--TTEEE-ECCSCSCHHHHHHHHHHHHST
T ss_pred EEEEEc--CCCcc-cccCcccHHHHHHHHhhccCc
Confidence 999996 57766 477989999999988887654
No 133
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=97.41 E-value=0.00015 Score=52.86 Aligned_cols=45 Identities=27% Similarity=0.366 Sum_probs=40.1
Q ss_pred cCCcchHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 4 VLSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 4 ~l~~~~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
.||..+ +.+|..|+.. ||-+.+=+..+|+.++||++.|+..|.+.
T Consensus 2 ~ls~~q-~~mv~~~s~~-Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l 46 (59)
T 1oai_A 2 TLSPEQ-QEMLQAFSTQ-SGMNLEWSQKCLQDNNWDYTRSAQAFTHL 46 (59)
T ss_dssp CCCHHH-HHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 366655 5699999999 99999999999999999999999999773
No 134
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=97.40 E-value=0.0014 Score=56.89 Aligned_cols=87 Identities=9% Similarity=0.076 Sum_probs=66.6
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecC-------------------ChhH---------
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDD-------------------TSEG--------- 228 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~-------------------s~eg--------- 228 (444)
.+|++||++.+++|..|..+. +.+.++.+. ++.+..++.+ +.+.
T Consensus 36 ~gk~~lv~F~~~~C~~C~~~~------~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (165)
T 3ha9_A 36 GGDVVILWFMAAWCPSCVYMA------DLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYG 109 (165)
T ss_dssp CSSEEEEEEECTTCTTHHHHH------HHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHS
T ss_pred CCCEEEEEEECCCCcchhhhH------HHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcC
Confidence 679999999999999998874 455555543 6777777776 2211
Q ss_pred ----------HHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCC-ChHHHHHHHHhhh
Q 013379 229 ----------KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV-QPESLLEDLVPFM 274 (444)
Q Consensus 229 ----------~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~-~~~~~l~~L~~~l 274 (444)
..++..|++..+|+++||++ .|.++. .|.. +.+.+...|...+
T Consensus 110 ~~~~~~~~d~~~~~~~~~v~~~P~~~lid~-~G~i~~--~g~~~~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 110 DPSWIMVMDDGSLVEKFNVRSIDYIVIMDK-SSNVLY--AGTTPSLGELESVIKSVQ 163 (165)
T ss_dssp CTTSEEEECCSHHHHHTTCCSSSEEEEEET-TCCEEE--EEESCCHHHHHHHHHHC-
T ss_pred CCCeeEEeChHHHHHHhCCCCceEEEEEcC-CCcEEE--eCCCCCHHHHHHHHHHHh
Confidence 26778899999999999997 688777 7877 8888888877654
No 135
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.36 E-value=0.00043 Score=57.84 Aligned_cols=93 Identities=11% Similarity=0.102 Sum_probs=67.3
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeee-E
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM-R 255 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v-~ 255 (444)
.+|++||++++++|..|..+...+ ..+.+.+. .++++..++.+.. ..++..|++..+|++++++. .+.+. .
T Consensus 24 ~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~~-g~~~~~~ 97 (133)
T 2dj3_A 24 PKKDVLIEFYAPWCGHCKQLEPIY---TSLGKKYKGQKDLVIAKMDATAN--DITNDQYKVEGFPTIYFAPS-GDKKNPI 97 (133)
T ss_dssp TTSEEEEEECCTTCSHHHHHHHHH---HHHHHHHTTSSSEEEEEECTTTS--CCCCSSCCCSSSSEEEEECT-TCTTSCE
T ss_pred CCCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCCEEEEEecCCcC--HHHHhhcCCCcCCEEEEEeC-CCcccce
Confidence 579999999999999999996542 34444454 4688887776543 34566799999999999974 33321 2
Q ss_pred EEe-CCCChHHHHHHHHhhhhcC
Q 013379 256 SWC-GMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 256 ~~~-G~~~~~~~l~~L~~~l~~~ 277 (444)
.+. |..++++|...|...+...
T Consensus 98 ~~~gg~~~~~~l~~~l~~~~~~~ 120 (133)
T 2dj3_A 98 KFEGGNRDLEHLSKFIDEHATKR 120 (133)
T ss_dssp ECCSSCCSTTHHHHHHHHHSSSC
T ss_pred EecCCCcCHHHHHHHHHHhcccc
Confidence 355 5688889988888876543
No 136
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=97.36 E-value=0.0011 Score=69.53 Aligned_cols=118 Identities=10% Similarity=0.069 Sum_probs=88.6
Q ss_pred hhcCCCccC--cccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCChhHH
Q 013379 155 SLYRPPFHL--MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGK 229 (444)
Q Consensus 155 ~~f~pp~~~--~~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s~eg~ 229 (444)
.+|.+..++ +-..+|++++ .+.+|++||++..++|..|..+...+ +.+.+-+.. ++.+..++.+..+..
T Consensus 6 ~Ly~~~~~V~~Lt~~~f~~~v---~~~~k~vlV~FyA~WC~pCk~~~P~l---~~la~~~~~~~~~v~~~~VD~d~d~~~ 79 (519)
T 3t58_A 6 VLYSSSDPLTLLDADSVRPTV---LGSSSAWAVEFFASWCGHAIAFAPTW---KELANDVKDWRPALNLAVLDCAEETNS 79 (519)
T ss_dssp CSCCTTSSSEEECTTTHHHHH---SSCSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHGGGTTTEEEEEEETTSGGGH
T ss_pred ccCCCCCCcEECChHHHHHHH---HhCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhhCcCCcEEEEEEECCccccH
Confidence 456554433 2245676655 35679999999999999999996443 445555555 799999999877788
Q ss_pred HHHHHcCCCCCcEEEEEeCC--CCeeeEEEeCCCChHHHHHHHHhhhhcCC
Q 013379 230 KVCTYYKLDSIPVVLVVDPI--TGQKMRSWCGMVQPESLLEDLVPFMDGGP 278 (444)
Q Consensus 230 ~~~~~y~~~~~P~l~ii~p~--tg~~v~~~~G~~~~~~~l~~L~~~l~~~~ 278 (444)
.++..|+|..+|++.++++. .|+.+....|..+++.+...|...+..+.
T Consensus 80 ~l~~~~~V~~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~ 130 (519)
T 3t58_A 80 AVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR 130 (519)
T ss_dssp HHHHHTTCCSBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCcccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999999852 34445555677899999999999887653
No 137
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=97.32 E-value=0.0012 Score=57.80 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=58.4
Q ss_pred HHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhH----------------------HHHH
Q 013379 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEG----------------------KKVC 232 (444)
Q Consensus 177 ~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg----------------------~~~~ 232 (444)
.-.+|++||++..++|..|..+...+ ..+.+-+++ ++.+..++.+.... ..++
T Consensus 45 ~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 121 (165)
T 3s9f_A 45 SLSGKTVFFYFSASWCPPCRGFTPQL---VEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALT 121 (165)
T ss_dssp GGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHH
T ss_pred HcCCCEEEEEEECCcChhHHHHHHHH---HHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHH
Confidence 33689999999999999998875433 233333443 67777777776533 6789
Q ss_pred HHcCCCCCcEEEEEeCCCCeeeEEE
Q 013379 233 TYYKLDSIPVVLVVDPITGQKMRSW 257 (444)
Q Consensus 233 ~~y~~~~~P~l~ii~p~tg~~v~~~ 257 (444)
+.|++..+|+++||++.+|+++.+.
T Consensus 122 ~~~~v~~~Pt~~lid~~~G~iv~~~ 146 (165)
T 3s9f_A 122 KKYSVESIPTLIGLNADTGDTVTTR 146 (165)
T ss_dssp HHTTCCSSSEEEEEETTTCCEEESC
T ss_pred HHcCCCCCCEEEEEeCCCCEEEecc
Confidence 9999999999999998558887653
No 138
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=97.32 E-value=0.0015 Score=55.29 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=57.2
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChh----------------------HHHHHHH
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE----------------------GKKVCTY 234 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~e----------------------g~~~~~~ 234 (444)
.+|++||++..++|..|..+...+ ..+.+-+. .++.+..++.+... ...+++.
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 103 (144)
T 1i5g_A 27 AGKTVFFYFSASWCPPSRAFTPQL---IDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTG 103 (144)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHH
Confidence 579999999999999998875433 23334344 47888888877532 4678899
Q ss_pred cCCCCCcEEEEEeCCCCeeeEEE
Q 013379 235 YKLDSIPVVLVVDPITGQKMRSW 257 (444)
Q Consensus 235 y~~~~~P~l~ii~p~tg~~v~~~ 257 (444)
|++..+|+++||++.+|+++.+.
T Consensus 104 ~~v~~~P~~~lid~~~G~i~~~~ 126 (144)
T 1i5g_A 104 FDVKSIPTLVGVEADSGNIITTQ 126 (144)
T ss_dssp TTCCSSSEEEEEETTTCCEEESC
T ss_pred cCCCCCCEEEEEECCCCcEEecc
Confidence 99999999999995478877553
No 139
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=97.31 E-value=0.0033 Score=54.60 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=69.4
Q ss_pred cCCeEEEEEeCCCchh-hHHHHhhccCChhHHHHHh-----cCEEEEEeecC----Chh---------------------
Q 013379 179 QDKWLLVNLQSTKEFS-SHMLNRDTWANEAVSQTIS-----TNFIFWQVYDD----TSE--------------------- 227 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~-~~~f~rdv~~~~~V~~~l~-----~~fV~w~~~~~----s~e--------------------- 227 (444)
.+||+||++..++|.. |......+ ..+.+-+. .++.++.++.+ +++
T Consensus 25 ~gk~vll~F~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 101 (171)
T 2rli_A 25 RGQWVLMYFGFTHCPDICPDELEKL---VQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTK 101 (171)
T ss_dssp TTSEEEEEEECTTCSSSHHHHHHHH---HHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHH
T ss_pred CCCEEEEEEEcCCCCchhHHHHHHH---HHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHH
Confidence 4799999999999987 87653221 12333332 36777777765 222
Q ss_pred -HHHHHHHcCCCCCc---------------EEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 228 -GKKVCTYYKLDSIP---------------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 228 -g~~~~~~y~~~~~P---------------~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
...+++.|++...| +++||++ .|.++.++.|..+++++...|...+..+
T Consensus 102 ~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~ 166 (171)
T 2rli_A 102 QVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNP-DGLFTDYYGRSRSAEQISDSVRRHMAAF 166 (171)
T ss_dssp HHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECT-TSCEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECC-CCeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 23578889998888 8999997 7999999999999999999998887643
No 140
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=97.31 E-value=0.0014 Score=55.98 Aligned_cols=87 Identities=16% Similarity=0.249 Sum_probs=65.2
Q ss_pred cCCeEEEEEeCCCchh--hHHHHhhccCChhHHHHH----h-cCEEEEEeecCChh-----------------------H
Q 013379 179 QDKWLLVNLQSTKEFS--SHMLNRDTWANEAVSQTI----S-TNFIFWQVYDDTSE-----------------------G 228 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~--~~~f~rdv~~~~~V~~~l----~-~~fV~w~~~~~s~e-----------------------g 228 (444)
.+|++||++..++|.. |.... +.+.++. + .++.++.++.+... .
T Consensus 32 ~gk~vll~F~a~~C~~v~C~~~~------~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~ 105 (150)
T 3fw2_A 32 KQKSLLINFWASWNDSISQKQSN------SELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLN 105 (150)
T ss_dssp TTSEEEEEEECTTCCCHHHHHHH------HHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGG
T ss_pred CCCEEEEEEEeCCCCchHHHHHH------HHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccc
Confidence 5799999999999999 98764 3333333 2 34888888877653 2
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 229 ~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
..++..|++..+|+++|||+ .|+++.+. .+++++...|...+.
T Consensus 106 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~---~~~~~l~~~l~~ll~ 148 (150)
T 3fw2_A 106 SEVAKQYSIYKIPANILLSS-DGKILAKN---LRGEELKKKIENIVE 148 (150)
T ss_dssp CHHHHHTTCCSSSEEEEECT-TSBEEEES---CCHHHHHHHHHHHHH
T ss_pred hHHHHHcCCCccCeEEEECC-CCEEEEcc---CCHHHHHHHHHHHHh
Confidence 36788999999999999997 68887765 377777777776654
No 141
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=97.30 E-value=0.0014 Score=55.58 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=57.5
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChh----------------------HHHHHH
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE----------------------GKKVCT 233 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~e----------------------g~~~~~ 233 (444)
-.+|++||++..++|..|..+...+ ..+.+-++ .++.+..++.+... ...++.
T Consensus 26 ~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 102 (146)
T 1o8x_A 26 LAGKLVFFYFSASWCPPARGFTPQL---IEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSK 102 (146)
T ss_dssp GTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHH
T ss_pred hCCCEEEEEEEccCCHHHHHHHHHH---HHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHH
Confidence 3679999999999999998875433 23333344 47777777877532 457889
Q ss_pred HcCCCCCcEEEEEeCCCCeeeEEE
Q 013379 234 YYKLDSIPVVLVVDPITGQKMRSW 257 (444)
Q Consensus 234 ~y~~~~~P~l~ii~p~tg~~v~~~ 257 (444)
.|++..+|+++||++.+|+++.+.
T Consensus 103 ~~~v~~~Pt~~lid~~~G~i~~~~ 126 (146)
T 1o8x_A 103 HFNVESIPTLIGVDADSGDVVTTR 126 (146)
T ss_dssp HTTCCSSSEEEEEETTTCCEEESC
T ss_pred HhCCCCCCEEEEEECCCCeEEEec
Confidence 999999999999995478877653
No 142
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=97.28 E-value=0.00092 Score=57.58 Aligned_cols=113 Identities=11% Similarity=0.069 Sum_probs=65.5
Q ss_pred cchHHHHHhhcCCCccCcccCcHHHHHHHHHHcCCeEEEEEeCCC--chhhHHHHhhccCChhHHHHHh--cCEE--EEE
Q 013379 147 DSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTK--EFSSHMLNRDTWANEAVSQTIS--TNFI--FWQ 220 (444)
Q Consensus 147 ~~~~~~l~~~f~pp~~~~~~gs~~~A~~~A~~~~K~LlVyl~~~~--~~~~~~f~rdv~~~~~V~~~l~--~~fV--~w~ 220 (444)
++..++|... ....+-..+|++.+. ..+.++|++..++ |..|..+. +.+.++.+ .++. ++.
T Consensus 8 ~~l~~~l~~~---~~~~l~~~~f~~~i~----~~~~~vv~f~~~~~~C~~C~~l~------P~l~~la~~~~~v~~~~~~ 74 (142)
T 2es7_A 8 SALWQRLLTR---GWQPVEASTVDDWIK----RVGDGVILLSSDPRRTPEVSDNP------VMIAELLREFPQFDWQVAV 74 (142)
T ss_dssp HHHHHHHHTT---TCEECCCC------------CCSEEEEECCCSCC----CCHH------HHHHHHHHTCTTSCCEEEE
T ss_pred chHHHHHhhc---cCcccccccHHHHHH----hCCCEEEEEECCCCCCccHHHHH------HHHHHHHHHhcccceeEEE
Confidence 3445555433 233334567888764 3344677777655 78888774 34444444 3566 776
Q ss_pred eecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhc
Q 013379 221 VYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 221 ~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
+++ .+...++..|++..+|+++++ ++|+.+.++.|..+.+++...|...+..
T Consensus 75 Vd~--d~~~~la~~~~V~~iPT~~~f--k~G~~v~~~~G~~~~~~l~~~i~~~l~~ 126 (142)
T 2es7_A 75 ADL--EQSEAIGDRFNVRRFPATLVF--TDGKLRGALSGIHPWAELLTLMRSIVDT 126 (142)
T ss_dssp ECH--HHHHHHHHTTTCCSSSEEEEE--SCC----CEESCCCHHHHHHHHHHHHC-
T ss_pred EEC--CCCHHHHHhcCCCcCCeEEEE--eCCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 555 456679999999999999999 4799999999999999998888887753
No 143
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=97.27 E-value=0.0015 Score=55.14 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=57.1
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChh----------------------HHHHHH
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE----------------------GKKVCT 233 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~e----------------------g~~~~~ 233 (444)
-.+|++||++..++|..|..+...+ ..+.+-++ .++.+..++.+... ...+++
T Consensus 26 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (144)
T 1o73_A 26 LVGKTVFLYFSASWCPPCRGFTPVL---AEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGK 102 (144)
T ss_dssp GTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHH
T ss_pred hCCCEEEEEEECcCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHH
Confidence 3679999999999999998875432 12333333 47777777777632 456889
Q ss_pred HcCCCCCcEEEEEeCCCCeeeEEE
Q 013379 234 YYKLDSIPVVLVVDPITGQKMRSW 257 (444)
Q Consensus 234 ~y~~~~~P~l~ii~p~tg~~v~~~ 257 (444)
.|++..+|+++||++.+|+++.+.
T Consensus 103 ~~~v~~~Pt~~lid~~~G~i~~~~ 126 (144)
T 1o73_A 103 TFGVESIPTLITINADTGAIIGTQ 126 (144)
T ss_dssp HHTCCSSSEEEEEETTTCCEEESC
T ss_pred HcCCCCCCEEEEEECCCCeEEecc
Confidence 999999999999995578877654
No 144
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=97.27 E-value=0.0024 Score=52.74 Aligned_cols=87 Identities=10% Similarity=0.088 Sum_probs=66.1
Q ss_pred HHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecCChhH--HHHHHHcCCCC-CcEEEEEeCCC
Q 013379 175 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG--KKVCTYYKLDS-IPVVLVVDPIT 250 (444)
Q Consensus 175 ~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~s~eg--~~~~~~y~~~~-~P~l~ii~p~t 250 (444)
...+++++++|+.|+++|..|..+- +.+.++.+ .+.-++.++++.... ..++..|+|.+ .|.++++. +
T Consensus 19 ~ii~~~~~vvi~khatwCgpc~~~~------~~~e~~~~~~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~il~k--~ 90 (112)
T 3iv4_A 19 QVIEENKYVFVLKHSETCPISANAY------DQFNKFLYERDMDGYYLIVQQERDLSDYIAKKTNVKHESPQAFYFV--N 90 (112)
T ss_dssp HHHHHCSEEEEEEECTTCHHHHHHH------HHHHHHHHHHTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSEEEEEE--T
T ss_pred HHHhcCCCEEEEEECCcCHhHHHHH------HHHHHHhccCCceEEEEEeecCchhhHHHHHHhCCccCCCeEEEEE--C
Confidence 3444599999999999999999874 45555553 467777778865433 56899999994 99999996 7
Q ss_pred CeeeEEE-eCCCChHHHHHH
Q 013379 251 GQKMRSW-CGMVQPESLLED 269 (444)
Q Consensus 251 g~~v~~~-~G~~~~~~~l~~ 269 (444)
|++++.. .|.++.+.+...
T Consensus 91 G~~v~~~SH~~I~~~~l~~~ 110 (112)
T 3iv4_A 91 GEMVWNRDHGDINVSSLAQA 110 (112)
T ss_dssp TEEEEEEEGGGCSHHHHHHH
T ss_pred CEEEEEeeccccCHHHHHHh
Confidence 9998774 467888866543
No 145
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=97.21 E-value=0.00026 Score=51.07 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=39.9
Q ss_pred CCcchHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 5 LSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 5 l~~~~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
|+..+ +++|.+|+.. ||.+.+=+..+|+.++||++.|+..|-+.
T Consensus 2 l~~~q-~~mv~~~s~~-T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 2 LNPVQ-LELLNKLHLE-TKLNAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp CCHHH-HHHHHHHHHH-HCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred CCHHH-HHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 56666 5599999999 99999999999999999999999999875
No 146
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=97.21 E-value=0.00098 Score=55.35 Aligned_cols=92 Identities=12% Similarity=0.108 Sum_probs=61.0
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCC-------CchhhHHHHhhccCChhHHHHHh---cCEEEEEeecCC-----hhHHHHH
Q 013379 168 SFEKAKDAASVQDKWLLVNLQST-------KEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDT-----SEGKKVC 232 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~-------~~~~~~~f~rdv~~~~~V~~~l~---~~fV~w~~~~~s-----~eg~~~~ 232 (444)
+|.+++..+ .+|+++|++.++ +|..|..+. +.+.++.+ .++.|..++++. .+...++
T Consensus 14 ~~~~~~~~~--~~~~v~v~F~a~~~~~~~~wC~~C~~~~------p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~ 85 (123)
T 1wou_A 14 EFHRAVEQH--NGKTIFAYFTGSKDAGGKSWCPDCVQAE------PVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFR 85 (123)
T ss_dssp HHHHHHHTT--TTSEEEEEEECCBCTTCCBSCHHHHHHH------HHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHH
T ss_pred HHHHHHHHh--CCCEEEEEEEccCCCCCCCcCHHHHHhh------HHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHH
Confidence 344444322 489999999999 999999985 34455444 478999888853 1234577
Q ss_pred HHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHH
Q 013379 233 TYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 270 (444)
Q Consensus 233 ~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L 270 (444)
..|++..+|++++++. |..+....| .+++.+...|
T Consensus 86 ~~~~i~~~Pt~~~~~~--~~~~~g~~~-~~~~~l~~~i 120 (123)
T 1wou_A 86 KNLKVTAVPTLLKYGT--PQKLVESEC-LQANLVEMLF 120 (123)
T ss_dssp HHHCCCSSSEEEETTS--SCEEEGGGG-GCHHHHHHHH
T ss_pred HHCCCCeeCEEEEEcC--CceEecccc-CCHHHHHHHH
Confidence 8899999999999985 433322222 3455444433
No 147
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=97.21 E-value=0.0012 Score=55.79 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=59.3
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecCChhH----------------------HHHHHHc
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG----------------------KKVCTYY 235 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~s~eg----------------------~~~~~~y 235 (444)
.+|++||++.+++|..|......+-.++.+.+.++ .++.+++++.+.... ..++..|
T Consensus 30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 109 (142)
T 3eur_A 30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY 109 (142)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhc
Confidence 36899999999999999887655544444555553 578888887766422 1257789
Q ss_pred CCCCCcEEEEEeCCCCeeeEEEeC
Q 013379 236 KLDSIPVVLVVDPITGQKMRSWCG 259 (444)
Q Consensus 236 ~~~~~P~l~ii~p~tg~~v~~~~G 259 (444)
++..+|+++||++ .|.++.+..|
T Consensus 110 ~v~~~P~~~lid~-~G~i~~~~~~ 132 (142)
T 3eur_A 110 DLRAIPTLYLLDK-NKTVLLKDAT 132 (142)
T ss_dssp CCTTCSEEEEECT-TCBEEEEEEC
T ss_pred CCCcCCeEEEECC-CCcEEecCCC
Confidence 9999999999996 7888876554
No 148
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=97.19 E-value=0.00093 Score=50.90 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=60.1
Q ss_pred EEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCC
Q 013379 183 LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ 262 (444)
Q Consensus 183 LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~ 262 (444)
.+|++.+++|..|..+...+ +.+.+-...++.+..++.+.. ..++..|++..+|++.+ +|+. ++.|..+
T Consensus 4 ~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~----~G~~--~~~G~~~ 72 (85)
T 1nho_A 4 NIEVFTSPTCPYCPMAIEVV---DEAKKEFGDKIDVEKIDIMVD--REKAIEYGLMAVPAIAI----NGVV--RFVGAPS 72 (85)
T ss_dssp CEEEESCSSSCCSTTHHHHH---HHHHHHHCSSCCEEEECTTTC--GGGGGGTCSSCSSEEEE----TTTE--EEECSSC
T ss_pred EEEEEECCCCcchHHHHHHH---HHHHHHhcCCeEEEEEECCCC--HHHHHhCCceeeCEEEE----CCEE--EEccCCC
Confidence 47889999999999986432 333333444777777676543 35788999999999988 5766 7789888
Q ss_pred hHHHHHHHHhhh
Q 013379 263 PESLLEDLVPFM 274 (444)
Q Consensus 263 ~~~~l~~L~~~l 274 (444)
.+++...|.+.+
T Consensus 73 ~~~l~~~l~~~l 84 (85)
T 1nho_A 73 REELFEAINDEM 84 (85)
T ss_dssp CHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 998888887664
No 149
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=97.18 E-value=0.002 Score=64.03 Aligned_cols=94 Identities=12% Similarity=0.066 Sum_probs=70.8
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecCC------hh-------------------HHHHH
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDT------SE-------------------GKKVC 232 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~s------~e-------------------g~~~~ 232 (444)
.+|++||++..++|..|..+...+ ..+.+-+. .++.++.++.+. .+ ...++
T Consensus 81 ~GK~vLl~F~atwC~~C~~~~p~L---~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~ 157 (352)
T 2hyx_A 81 RGKVVLIDFWAYSCINCQRAIPHV---VGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATW 157 (352)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHH
T ss_pred CCCEEEEEEECCCChhHHHHHHHH---HHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHH
Confidence 479999999999999998764332 12323333 368888887542 11 13567
Q ss_pred HHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhc
Q 013379 233 TYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 233 ~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
+.|++..+|+++||++ +|+++.++.|..+.+++...|.+.+..
T Consensus 158 ~~ygV~~~Pt~~lID~-~G~Iv~~~~G~~~~~~l~~~I~~lL~e 200 (352)
T 2hyx_A 158 TNYRNRYWPAEYLIDA-TGTVRHIKFGEGDYNVTETLVRQLLND 200 (352)
T ss_dssp HHTTCCEESEEEEECT-TSBEEEEEESBCCHHHHHHHHHHHHHH
T ss_pred HHcCCCccCEEEEEeC-CCeEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 7899999999999996 799999999998999988888887753
No 150
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=97.11 E-value=0.00068 Score=62.76 Aligned_cols=84 Identities=13% Similarity=0.218 Sum_probs=62.2
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ 244 (444)
.+|.+++..+ ..++++||+++.++|..|..+.. .+..+... ++.|..++.+ ...++..|++..+|+++
T Consensus 108 ~~f~~~v~~~-~~~k~vvV~F~a~wC~~C~~l~p------~l~~la~~~~~v~f~~vd~~---~~~l~~~~~i~~~PTl~ 177 (217)
T 2trc_P 108 EQFLETIEKE-QKVTTIVVNIYEDGVRGCDALNS------SLECLAAEYPMVKFCKIRAS---NTGAGDRFSSDVLPTLL 177 (217)
T ss_dssp HHHHHHHHHS-CTTCEEEEEEECTTSTTHHHHHH------HHHHHHTTCTTSEEEEEEHH---HHTCSTTSCGGGCSEEE
T ss_pred HHHHHHHHhc-CCCcEEEEEEECCCCccHHHHHH------HHHHHHHHCCCeEEEEEECC---cHHHHHHCCCCCCCEEE
Confidence 4566555422 23599999999999999999853 34444443 5778877775 34577889999999999
Q ss_pred EEeCCCCeeeEEEeCCCC
Q 013379 245 VVDPITGQKMRSWCGMVQ 262 (444)
Q Consensus 245 ii~p~tg~~v~~~~G~~~ 262 (444)
|+. .|+++.++.|..+
T Consensus 178 ~~~--~G~~v~~~~G~~~ 193 (217)
T 2trc_P 178 VYK--GGELISNFISVAE 193 (217)
T ss_dssp EEE--TTEEEEEETTGGG
T ss_pred EEE--CCEEEEEEeCCcc
Confidence 986 7999989888654
No 151
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=97.08 E-value=0.0013 Score=50.04 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=60.2
Q ss_pred CeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCC
Q 013379 181 KWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM 260 (444)
Q Consensus 181 K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~ 260 (444)
...+|++.+++|..|..+...+ ..+.+-...++.+..++.+.. ..++..|++..+|++.+ +|+. ++.|.
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~----~G~~--~~~G~ 71 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVV---EEVANEMPDAVEVEYINVMEN--PQKAMEYGIMAVPTIVI----NGDV--EFIGA 71 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHH---HHHHHHCSSSEEEEEEESSSS--CCTTTSTTTCCSSEEEE----TTEE--ECCSS
T ss_pred ceEEEEEeCCCCCchHHHHHHH---HHHHHHcCCceEEEEEECCCC--HHHHHHCCCcccCEEEE----CCEE--eeecC
Confidence 4578899999999999885422 223333334788887777543 35678899999999988 5776 77898
Q ss_pred CChHHHHHHHHhh
Q 013379 261 VQPESLLEDLVPF 273 (444)
Q Consensus 261 ~~~~~~l~~L~~~ 273 (444)
.+.+++...|.+.
T Consensus 72 ~~~~~l~~~l~~~ 84 (85)
T 1fo5_A 72 PTKEALVEAIKKR 84 (85)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh
Confidence 8888888887654
No 152
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=97.08 E-value=0.004 Score=62.23 Aligned_cols=99 Identities=18% Similarity=0.247 Sum_probs=75.9
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHH------hcCEEEEEeecCChhHHHHHHHcCCCC
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI------STNFIFWQVYDDTSEGKKVCTYYKLDS 239 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l------~~~fV~w~~~~~s~eg~~~~~~y~~~~ 239 (444)
..+|++++ ..++++||+++.++|..|+.+... | +.+.+.+ +.++.+..++.+. ...++..|++..
T Consensus 12 ~~~f~~~~----~~~~~vlV~F~a~wC~~C~~~~p~-~--~~~a~~~~~~~~~~~~v~~~~Vd~~~--~~~l~~~~~v~~ 82 (382)
T 2r2j_A 12 TENIDEIL----NNADVALVNFYADWCRFSQMLHPI-F--EEASDVIKEEFPNENQVVFARVDCDQ--HSDIAQRYRISK 82 (382)
T ss_dssp TTTHHHHH----HHCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTCC---CCEEEEEEETTT--CHHHHHHTTCCE
T ss_pred HHHHHHHH----hcCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHHHhhcCCCCceEEEEEECCc--cHHHHHhcCCCc
Confidence 45677765 357999999999999999998643 2 3444555 2347888777654 367899999999
Q ss_pred CcEEEEEeCCCCeeeE-EEeCCCChHHHHHHHHhhhh
Q 013379 240 IPVVLVVDPITGQKMR-SWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 240 ~P~l~ii~p~tg~~v~-~~~G~~~~~~~l~~L~~~l~ 275 (444)
||++.++. .|..+. ...|..+++.+...|...+.
T Consensus 83 ~Pt~~~f~--~G~~~~~~~~G~~~~~~l~~~i~~~~~ 117 (382)
T 2r2j_A 83 YPTLKLFR--NGMMMKREYRGQRSVKALADYIRQQKS 117 (382)
T ss_dssp ESEEEEEE--TTEEEEEECCSCCSHHHHHHHHHHHHS
T ss_pred CCEEEEEe--CCcEeeeeecCcchHHHHHHHHHHhcc
Confidence 99999885 688776 47899999999998887765
No 153
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=97.03 E-value=0.0042 Score=64.32 Aligned_cols=100 Identities=10% Similarity=0.141 Sum_probs=78.9
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
-..+|++++ +.++++||+++.++|..|+.+...+ +.+.+.++. ++.+..++.+.. ..++..|++..||++
T Consensus 20 ~~~~f~~~~----~~~~~~lv~F~a~wC~~C~~~~p~~---~~~a~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~ 90 (504)
T 2b5e_A 20 ATDSFNEYI----QSHDLVLAEFFAPWCGHCKNMAPEY---VKAAETLVEKNITLAQIDCTEN--QDLCMEHNIPGFPSL 90 (504)
T ss_dssp CTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTTCEEEEEETTTC--HHHHHHTTCCSSSEE
T ss_pred CHHHHHHHH----hcCCeEEEEEECCCCHHHHHhHHHH---HHHHHHhccCCeEEEEEECCCC--HHHHHhcCCCcCCEE
Confidence 456788865 4689999999999999999996432 345555655 488888776543 679999999999999
Q ss_pred EEEeCCCCee--eEEEeCCCChHHHHHHHHhhhh
Q 013379 244 LVVDPITGQK--MRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 244 ~ii~p~tg~~--v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
.++. .|.. +....|..+.+.+...|...+.
T Consensus 91 ~~~~--~g~~~~~~~~~G~~~~~~l~~~l~~~~~ 122 (504)
T 2b5e_A 91 KIFK--NSDVNNSIDYEGPRTAEAIVQFMIKQSQ 122 (504)
T ss_dssp EEEE--TTCTTCEEECCSCCSHHHHHHHHHHHTS
T ss_pred EEEe--CCccccceeecCCCCHHHHHHHHHHhcC
Confidence 9996 4765 7788899999999988877664
No 154
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=97.03 E-value=0.0043 Score=53.72 Aligned_cols=92 Identities=12% Similarity=0.168 Sum_probs=61.9
Q ss_pred cCCe-EEEEEe-CCCchhhHHHHhhccCChhHHHHH-hcCEEEEEeecCChhH-------------------HHHHHHcC
Q 013379 179 QDKW-LLVNLQ-STKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDDTSEG-------------------KKVCTYYK 236 (444)
Q Consensus 179 ~~K~-LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l-~~~fV~w~~~~~s~eg-------------------~~~~~~y~ 236 (444)
.+|+ ++|++. .++|..|......+ ..+.+-+ ..++.++.++.++.+. ..++..|+
T Consensus 27 ~gk~~vvl~F~~a~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 103 (161)
T 3drn_A 27 IGKHNIVLYFYPKDDTPGSTREASAF---RDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYG 103 (161)
T ss_dssp TTTSEEEEEECSCTTCHHHHHHHHHH---HHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTT
T ss_pred cCCCCEEEEEEcCCCCCchHHHHHHH---HHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcC
Confidence 3566 899998 89999888764332 1222222 2458888888876543 35677888
Q ss_pred CCC----CcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 237 LDS----IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 237 ~~~----~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
+.. +|.++||++ .|.++..+.|.......+..+.+.+
T Consensus 104 v~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~il~~l 144 (161)
T 3drn_A 104 AKGFILPARITFVIDK-KGIIRHIYNSQMNPANHVNEALKAL 144 (161)
T ss_dssp CCCSSSCCCEEEEECT-TSBEEEEEECSSCTTHHHHHHHHHH
T ss_pred CCCcCcccceEEEECC-CCEEEEEEecCCCCCcCHHHHHHHH
Confidence 888 999999997 7999999998544443344444333
No 155
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=97.03 E-value=0.00075 Score=55.02 Aligned_cols=87 Identities=11% Similarity=0.056 Sum_probs=60.3
Q ss_pred HHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCCh--hHHHHHHHcCCCCCcEEEEEeC
Q 013379 171 KAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS--EGKKVCTYYKLDSIPVVLVVDP 248 (444)
Q Consensus 171 ~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~--eg~~~~~~y~~~~~P~l~ii~p 248 (444)
+++..|...+|..+|++..++|..|..+.. +| .++- +.+-...++.+.. +...++..|++..+|++.|
T Consensus 3 ~~~~la~~~~k~~vV~F~A~WC~~C~~~~p-~~-----~~~a-~~~~~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--- 72 (106)
T 3kp8_A 3 LAVGLAAHLRQIGGTMYGAYWCPHCQDQKE-LF-----GAAF-DQVPYVECSPNGPGTPQAQECTEAGITSYPTWII--- 72 (106)
T ss_dssp HHHHHHHHHHHHTCEEEECTTCHHHHHHHH-HH-----GGGG-GGSCEEESCTTCTTSCCCHHHHHTTCCSSSEEEE---
T ss_pred HhhHHHHhcCCCEEEEEECCCCHHHHHHHH-HH-----HHHH-HhCCEEEEecccccchhHHHHHHcCCeEeCEEEE---
Confidence 456677777888899999999999999842 22 2222 2222333343333 4567899999999999776
Q ss_pred CCCeeeEEEeCCCChHHHHHHHH
Q 013379 249 ITGQKMRSWCGMVQPESLLEDLV 271 (444)
Q Consensus 249 ~tg~~v~~~~G~~~~~~~l~~L~ 271 (444)
+|+. +.|..+.++|...+.
T Consensus 73 -~G~~---~~G~~~~~~l~~~~~ 91 (106)
T 3kp8_A 73 -NGRT---YTGVRSLEALAVASG 91 (106)
T ss_dssp -TTEE---EESCCCHHHHHHHHT
T ss_pred -CCEE---ecCCCCHHHHHHHhC
Confidence 5763 779888887766553
No 156
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.96 E-value=0.001 Score=46.56 Aligned_cols=43 Identities=19% Similarity=0.378 Sum_probs=38.2
Q ss_pred CcchHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 6 SANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 6 ~~~~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
+....++.|.+.+++ |-+.+.|+..|.+++||++.|++..|++
T Consensus 4 ~~~~~~~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 4 TGSEYETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp CSHHHHHHHHHHHHT--TCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred CCccCHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 444557799999999 8999999999999999999999999874
No 157
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=96.94 E-value=0.0019 Score=66.53 Aligned_cols=102 Identities=14% Similarity=0.205 Sum_probs=77.9
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~i 245 (444)
..+|++++ .....++++||+++.++|..|+.+...+ +.+.+.+...+.+..++.+. ...+++.|++..||++.+
T Consensus 8 ~~~f~~~i-~~~~~~~~~lv~F~a~wC~~C~~~~p~~---~~~a~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Ptl~~ 81 (481)
T 3f8u_A 8 DDNFESRI-SDTGSAGLMLVEFFAPWCGHAKRLAPEY---EAAATRLKGIVPLAKVDCTA--NTNTCNKYGVSGYPTLKI 81 (481)
T ss_dssp TTTHHHHT-TCCSSSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCCEEEEETTT--CHHHHHHTTCCEESEEEE
T ss_pred HHHHHHHH-HhCCCCCeEEEEEECCCCHHHHHhHHHH---HHHHHHhcCceEEEEEECCC--CHHHHHhcCCCCCCEEEE
Confidence 34666666 1223349999999999999999996533 45555666666677666644 567899999999999999
Q ss_pred EeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 246 VDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 246 i~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
+. .|+.+....|..+.+.+...|...+.
T Consensus 82 ~~--~g~~~~~~~G~~~~~~l~~~~~~~~~ 109 (481)
T 3f8u_A 82 FR--DGEEAGAYDGPRTADGIVSHLKKQAG 109 (481)
T ss_dssp EE--TTEEEEECCSCSSHHHHHHHHHHHTS
T ss_pred Ee--CCceeeeecCccCHHHHHHHHHhhcc
Confidence 95 68878888999999999988887764
No 158
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=96.92 E-value=0.0023 Score=53.27 Aligned_cols=82 Identities=16% Similarity=0.323 Sum_probs=60.9
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
..+|.+.+..+ ..+++++|+++.++|..|..+. +.+.++-++ +..|..++++.. +..|++...|++
T Consensus 10 ~~~f~~~v~~~-~~~~~vvv~F~a~wc~~C~~~~------p~l~~la~~~~~v~f~kvd~d~~-----~~~~~v~~~PT~ 77 (118)
T 3evi_A 10 GNQYVNEVTNA-EEDVWVIIHLYRSSIPMCLLVN------QHLSLLARKFPETKFVKAIVNSC-----IQHYHDNCLPTI 77 (118)
T ss_dssp GGGHHHHTTTC-CTTCEEEEEEECTTSHHHHHHH------HHHHHHHHHCTTSEEEEEEGGGT-----STTCCGGGCSEE
T ss_pred HHHHHHHHHhc-CCCCeEEEEEeCCCChHHHHHH------HHHHHHHHHCCCCEEEEEEhHHh-----HHHCCCCCCCEE
Confidence 44566655422 2245999999999999999985 444554443 467777787652 578999999999
Q ss_pred EEEeCCCCeeeEEEeCCC
Q 013379 244 LVVDPITGQKMRSWCGMV 261 (444)
Q Consensus 244 ~ii~p~tg~~v~~~~G~~ 261 (444)
+++. +|+.+.++.|..
T Consensus 78 ~~fk--~G~~v~~~~G~~ 93 (118)
T 3evi_A 78 FVYK--NGQIEAKFIGII 93 (118)
T ss_dssp EEEE--TTEEEEEEESTT
T ss_pred EEEE--CCEEEEEEeChh
Confidence 9996 799999999864
No 159
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=96.92 E-value=0.0029 Score=56.46 Aligned_cols=92 Identities=12% Similarity=0.113 Sum_probs=67.4
Q ss_pred cCC-eEEEEEeCCCchhhHHHHhhccCChhHHHHH----hcCEEEEEeecCC--------hh------------------
Q 013379 179 QDK-WLLVNLQSTKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDT--------SE------------------ 227 (444)
Q Consensus 179 ~~K-~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l----~~~fV~w~~~~~s--------~e------------------ 227 (444)
.+| ++||++..++|..|.... +.+.++. ..++.++.++.+. .+
T Consensus 44 ~gk~~vlv~F~a~~C~~C~~~~------~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d 117 (196)
T 2ywi_A 44 KSDAATVIMFICNHCPFVKHVQ------HELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYD 117 (196)
T ss_dssp CCSSEEEEEECCSSCHHHHHHH------HHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEEC
T ss_pred CCCCeEEEEEeCCCCccHHHHH------HHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEEC
Confidence 466 599999999999998654 3333333 2358888888742 21
Q ss_pred -HHHHHHHcCCCCCcEEEEEeCCCCeeeEE---------EeCCCChHHHHHHHHhhhhcC
Q 013379 228 -GKKVCTYYKLDSIPVVLVVDPITGQKMRS---------WCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 228 -g~~~~~~y~~~~~P~l~ii~p~tg~~v~~---------~~G~~~~~~~l~~L~~~l~~~ 277 (444)
...++..|++..+|+++||++ +|+++.+ ..|..+.+++...|...+...
T Consensus 118 ~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~ 176 (196)
T 2ywi_A 118 ETQEVAKAYDAACTPDFYIFDR-DLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGR 176 (196)
T ss_dssp SSCHHHHHHTCCEESEEEEEET-TCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred CchHHHHHhCCCCCCeEEEEcC-CCeEEEccccCcccccccCccCHHHHHHHHHHHHcCC
Confidence 234677889999999999996 6988877 346678899999998887654
No 160
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=96.91 E-value=0.0008 Score=52.19 Aligned_cols=72 Identities=10% Similarity=0.120 Sum_probs=55.2
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 367 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 367 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
..|+||-|+|...+. ...++++.+|++.|...+ +.....|.|..+||++. .+....+.||+++||.+ .+|.|
T Consensus 5 m~lRvrs~~G~~Ri~-v~~~~t~~~L~~~I~~~~-~i~~~~~~l~~~~~p~~-~l~~~~~~~l~~lgl~hGd~l~l 77 (80)
T 2pjh_A 5 IIIRVQSPDGVKRIT-ATKRETAATFLKKVAKEF-GFQNNGFSVYINRNKTG-EITASSSKSLHLLKIKHGDLLFL 77 (80)
T ss_dssp CCCEEECSSEEEECC-CCSSCCHHHHHHHHHHHT-CCCTTTCCCCCSCCGGG-GSSSCCCCTTTTTCCCTTCCEEC
T ss_pred EEEEEECCCCCEEEE-cCCcChHHHHHHHHHHHc-CCCCCcceEEecCCCCC-cccCCCCCCHHHcCCCCCCEEEE
Confidence 579999999974443 778899999999999875 34556788888999842 24344789999999984 55554
No 161
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=96.90 E-value=0.0069 Score=55.66 Aligned_cols=98 Identities=10% Similarity=0.192 Sum_probs=71.8
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcC---EEEEEeecCChhHHHHHHHcCCCCCcE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDDTSEGKKVCTYYKLDSIPV 242 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~---fV~w~~~~~s~eg~~~~~~y~~~~~P~ 242 (444)
..+|++++ ..+++++|+++.++|..|..+...+ ..+...+... +.+..++.+. ...++..|++..+|+
T Consensus 137 ~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~p~~---~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt 207 (241)
T 3idv_A 137 KENFDEVV----NDADIILVEFYAPWCGHCKKLAPEY---EKAAKELSKRSPPIPLAKVDATA--ETDLAKRFDVSGYPT 207 (241)
T ss_dssp TTTHHHHH----HHCSEEEEEEECTTCTGGGGTHHHH---HHHHHHHHTSSSCCCEEEEETTT--CHHHHHHTTCCSSSE
T ss_pred HHHHHHhh----ccCCeEEEEEECCCCHHHHHhHHHH---HHHHHHHhccCCcEEEEEEECCC--CHHHHHHcCCcccCE
Confidence 45677665 4578999999999999998874322 2233333332 7777666654 356899999999999
Q ss_pred EEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 243 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 243 l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
++++. .|+.+. ..|..+.+.++..|.+.+.
T Consensus 208 ~~~~~--~g~~~~-~~g~~~~~~l~~~l~~~~~ 237 (241)
T 3idv_A 208 LKIFR--KGRPYD-YNGPREKYGIVDYMIEQSG 237 (241)
T ss_dssp EEEEE--TTEEEE-CCSCCSHHHHHHHHHHHTT
T ss_pred EEEEE--CCeEEE-ecCCCCHHHHHHHHHhhhC
Confidence 99997 477665 7898899999888876644
No 162
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=96.90 E-value=0.0011 Score=62.46 Aligned_cols=98 Identities=13% Similarity=0.210 Sum_probs=67.9
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEEEE
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV 245 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~i 245 (444)
.|.+++..+ ..++++||+++.++|..|..+.. .+..+... ++.|..++.+. ..++..|++..+|+++|
T Consensus 122 ~f~~~v~~~-~~~k~VvV~Fya~wC~~Ck~l~p------~l~~La~~~~~v~f~kVd~d~---~~l~~~~~I~~~PTll~ 191 (245)
T 1a0r_P 122 QFLETIEKE-QKITTIVVHIYEDGIKGCDALNS------SLICLAAEYPMVKFCKIKASN---TGAGDRFSSDVLPTLLV 191 (245)
T ss_dssp HHHHHHHSS-CTTCEEEEEEECTTSTTHHHHHH------HHHHHHHHCTTSEEEEEEHHH---HCCTTSSCTTTCSEEEE
T ss_pred HHHHHHHHh-cCCCEEEEEEECCCChHHHHHHH------HHHHHHHHCCCCEEEEEeCCc---HHHHHHCCCCCCCEEEE
Confidence 455544322 25899999999999999999853 34444432 47787777643 44778899999999988
Q ss_pred EeCCCCeeeEEEeCCCC---hHHHHHHHHhhhhcC
Q 013379 246 VDPITGQKMRSWCGMVQ---PESLLEDLVPFMDGG 277 (444)
Q Consensus 246 i~p~tg~~v~~~~G~~~---~~~~l~~L~~~l~~~ 277 (444)
+. .|.++.++.|..+ .+-....|..+|..+
T Consensus 192 ~~--~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~ 224 (245)
T 1a0r_P 192 YK--GGELLSNFISVTEQLAEEFFTGDVESFLNEY 224 (245)
T ss_dssp EE--TTEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred EE--CCEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence 86 7999999988642 112344566666554
No 163
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.89 E-value=0.0013 Score=49.94 Aligned_cols=41 Identities=12% Similarity=0.189 Sum_probs=37.2
Q ss_pred HHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013379 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (444)
Q Consensus 10 ~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (444)
.++.|.+.+++ |-+.+.|+..|.+++||++.|++..|++.+
T Consensus 29 ~ee~I~~L~eM--GF~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 29 SEEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp CHHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred cHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 36699999999 899999999999999999999999998643
No 164
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.87 E-value=0.0032 Score=51.36 Aligned_cols=79 Identities=23% Similarity=0.369 Sum_probs=57.6
Q ss_pred CCCCCCCCCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-
Q 013379 357 EEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA- 435 (444)
Q Consensus 357 ~EP~~~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~- 435 (444)
+||........+|.||..+|+.+...+..++||..|..-|... .+......+|+.. ++. | +.+.||.++|+.
T Consensus 14 ~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~qrLi~~--Gk~--L--~D~~tL~~ygI~~ 86 (106)
T 1ttn_A 14 PEPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAA-EGVEPGSQRWFFS--GRP--L--TDKMKFEELKIPK 86 (106)
T ss_dssp -------CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHT-TCCCSTTCEEEET--TEE--C--CTTSHHHHCCCSS
T ss_pred CCCCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH-HCcCcccEEEEEC--CEE--C--CCCCcHHHcCCCC
Confidence 5666566677899999999999999999999999999999875 4656667777753 443 4 457899999998
Q ss_pred CceEEEE
Q 013379 436 NAMISVT 442 (444)
Q Consensus 436 ~~~v~v~ 442 (444)
+++|.|.
T Consensus 87 g~ti~lv 93 (106)
T 1ttn_A 87 DYVVQVI 93 (106)
T ss_dssp SCEEEEE
T ss_pred CCEEEEE
Confidence 5666554
No 165
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.87 E-value=0.0025 Score=47.00 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=37.2
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (444)
+++|.+.+++ |-+.+.|+..|.+|+||++.|++..|+....
T Consensus 10 ~~~I~~L~~M--GF~~~~a~~AL~~~~~nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 10 EKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLTSNKQ 50 (63)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 5689999999 9999999999999999999999999986543
No 166
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=96.87 E-value=0.00089 Score=46.38 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=37.0
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (444)
+++|++.+++ |-+...|++.|.+|+||++.|++..|++.+
T Consensus 5 ~eaI~rL~~m--GF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~ 44 (47)
T 1dv0_A 5 KEAIERLKAL--GFPESLVIQAYFACEKNENLAANFLLSQNF 44 (47)
T ss_dssp HHHHTTTTTT--TCCHHHHHHHHTTTTSCHHHHHHHTTSCCC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCcC
Confidence 5589999999 999999999999999999999999998654
No 167
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=96.86 E-value=0.00042 Score=69.19 Aligned_cols=39 Identities=26% Similarity=0.487 Sum_probs=36.8
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
++++.+|-+| ||+|+..|..||+.++||||.||+.||+.
T Consensus 46 ~~~~~~f~~~-~~~~~~~~~~~l~~~~w~~~~~~~~~~~~ 84 (362)
T 4gew_A 46 EQKLHEFAII-TATDEAFAQSILQDVDWDLKKALDVFYGS 84 (362)
T ss_dssp HHHHHHHHHH-HTCCHHHHHHHTTSSSSCHHHHHHHHHHC
T ss_pred HHHHHHHHHH-hCCcHHHHHHHHhhcCchHHHHHHHHcCC
Confidence 5588999999 99999999999999999999999999975
No 168
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=96.84 E-value=0.004 Score=55.21 Aligned_cols=90 Identities=16% Similarity=0.152 Sum_probs=64.4
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh---cCEEEEEeecCC--------hh-------------------H
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDT--------SE-------------------G 228 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~---~~fV~w~~~~~s--------~e-------------------g 228 (444)
.+|++||++..++|..|.... +.+.++.+ +.+.++.++.+. .+ .
T Consensus 32 ~gk~vlv~F~a~~C~~C~~~~------~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~ 105 (188)
T 2cvb_A 32 HEPLLAVVFMCNHCPYVKGSI------GELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDET 105 (188)
T ss_dssp CSSEEEEEEECSSCHHHHTTH------HHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSS
T ss_pred CCCEEEEEEECCCCccHHHHH------HHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCc
Confidence 468999999999998887543 33444443 237777777632 21 2
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCC----------CChHHHHHHHHhhhhcC
Q 013379 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM----------VQPESLLEDLVPFMDGG 277 (444)
Q Consensus 229 ~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~----------~~~~~~l~~L~~~l~~~ 277 (444)
..++..|++..+|+++||++ .|+++.+ |. .+.+++...|...+...
T Consensus 106 ~~~~~~~~v~~~P~~~lid~-~G~i~~~--g~~~~~~~~~g~~~~~~l~~~i~~ll~~~ 161 (188)
T 2cvb_A 106 QEVAKAYRALRTPEVFLFDE-RRLLRYH--GRVNDNPKDPSKVQSHDLEAAIEALLRGE 161 (188)
T ss_dssp SHHHHHTTCCEESEEEEECT-TCBEEEE--ECSSSCTTCGGGCCCCHHHHHHHHHHTTC
T ss_pred chHHHHcCCCCCCeEEEECC-CCcEEEE--EecCCccccccccCHHHHHHHHHHHHcCC
Confidence 34677899999999999996 6887766 43 36788888888887654
No 169
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=96.84 E-value=0.0017 Score=46.17 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=35.9
Q ss_pred HHHHHHhhcccccCC-CHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013379 10 KQSMVSSFLEIAVGQ-TAETAVQFLQATSWKLDEAIQLFYVGN 51 (444)
Q Consensus 10 ~~~~i~~F~~itt~~-~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (444)
-++.|.+.+++ |- +.+.|+..|.+++||++.||+..|+.+
T Consensus 11 ~~~~l~~L~~M--GF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 11 FQQQLEQLNSM--GFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 35689999999 66 999999999999999999999999854
No 170
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=96.82 E-value=0.0055 Score=45.69 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=54.5
Q ss_pred EEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCC-
Q 013379 183 LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV- 261 (444)
Q Consensus 183 LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~- 261 (444)
+.|++..++|..|..+...+ +.+.+-+..++.+..++ ...++..|++..+|++.| +|+.+.. |..
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l---~~~~~~~~~~~~~~~v~-----~~~~~~~~~v~~~Pt~~~----~G~~~~~--G~~~ 67 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNA---REAVKELGIDAEFEKIK-----EMDQILEAGLTALPGLAV----DGELKIM--GRVA 67 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHH---HHHHHHTTCCEEEEEEC-----SHHHHHHHTCSSSSCEEE----TTEEEEC--SSCC
T ss_pred cEEEEEcCCChhHHHHHHHH---HHHHHHcCCceEEEEec-----CHHHHHHCCCCcCCEEEE----CCEEEEc--CCCC
Confidence 45788899999999986443 34444455578887666 346788999999999988 5877655 886
Q ss_pred ChHHHHHHH
Q 013379 262 QPESLLEDL 270 (444)
Q Consensus 262 ~~~~~l~~L 270 (444)
+.+++.+.|
T Consensus 68 ~~~~l~~~l 76 (77)
T 1ilo_A 68 SKEEIKKIL 76 (77)
T ss_dssp CHHHHHHHC
T ss_pred CHHHHHHHh
Confidence 888776643
No 171
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.79 E-value=0.0021 Score=43.56 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=34.9
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
++.|.+.+++ |-+.+.|+..|..++||++.|++..|++
T Consensus 5 e~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 5 SLAVEELSGM--GFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHTT--TSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 5689999999 8999999999999999999999988864
No 172
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=96.77 E-value=0.009 Score=51.62 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=63.9
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecC--------Chh-HHHHHH-Hc------------
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDD--------TSE-GKKVCT-YY------------ 235 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~--------s~e-g~~~~~-~y------------ 235 (444)
.+||+||++..++|..|......+ ..+.+-+. .++.++.++.+ +.+ ...++. .|
T Consensus 31 ~gk~vll~f~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 107 (170)
T 2p5q_A 31 KGKVLLIVNVASKCGMTNSNYAEM---NQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDV 107 (170)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBS
T ss_pred CCCEEEEEEEeccCCccHHHHHHH---HHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeecc
Confidence 579999999999999997654322 12222222 35888888764 232 233444 32
Q ss_pred -----------------CC--CCCc---EEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 236 -----------------KL--DSIP---VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 236 -----------------~~--~~~P---~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
++ ..+| +++||++ .|+++.++.|..+++++...|...+.
T Consensus 108 ~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~ 168 (170)
T 2p5q_A 108 NGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNK-DGQVVDRYYPTTSPLSLERDIKQLLE 168 (170)
T ss_dssp SSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECT-TSCEEEEECTTSCGGGGHHHHHHHTT
T ss_pred CCCchHHHHHHHHhcCCCccCCcccccccEEEECC-CCCEEEeeCCCCCHHHHHHHHHHHhh
Confidence 33 5578 8999996 79999999998888888888877664
No 173
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=96.76 E-value=0.0043 Score=61.16 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=72.7
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
..+|++.+ ...+|++||+++.++|..|..+...+ ..+.+.++. ++++..++.+..+ +..|++..||++
T Consensus 256 ~~~f~~~~---~~~~k~~lv~f~a~wC~~C~~~~p~~---~~la~~~~~~~~v~~~~vd~~~~~----~~~~~v~~~Pt~ 325 (361)
T 3uem_A 256 GKNFEDVA---FDEKKNVFVEFYAPWCGHCKQLAPIW---DKLGETYKDHENIVIAKMDSTANE----VEAVKVHSFPTL 325 (361)
T ss_dssp TTTHHHHH---TCTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETTTCB----CSSCCCCSSSEE
T ss_pred cCchhhhc---ccCCCcEEEEEecCcCHhHHHHHHHH---HHHHHHhccCCcEEEEEEECCccc----hhhcCCcccCeE
Confidence 44666655 45789999999999999999985322 234444444 4888888877665 578999999999
Q ss_pred EEEeCCCCeeeEEEeCCCChHHHHHHHHhh
Q 013379 244 LVVDPITGQKMRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 244 ~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~ 273 (444)
.++....|..+....|..+.+.|+..|.+.
T Consensus 326 ~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~ 355 (361)
T 3uem_A 326 KFFPASADRTVIDYNGERTLDGFKKFLESG 355 (361)
T ss_dssp EEECSSSSCCCEECCSCSSHHHHHHHHTTT
T ss_pred EEEECCCCcceeEecCCCCHHHHHHHHHhc
Confidence 999754456677888988988887766543
No 174
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.0055 Score=53.58 Aligned_cols=89 Identities=15% Similarity=0.201 Sum_probs=62.0
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHH----hcCEEEEEeecC--------Chh-HHHHH-------------
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDD--------TSE-GKKVC------------- 232 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l----~~~fV~w~~~~~--------s~e-g~~~~------------- 232 (444)
.+||+||++..++|..|. .. +.+.++. ..++.+++++.+ +.+ ...++
T Consensus 31 ~Gk~vll~F~a~wC~~C~-~~------~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d 103 (171)
T 3cmi_A 31 KGKVVLIVNVASKCGFTP-QY------KELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKK 103 (171)
T ss_dssp TTCEEEEEEEESSSCCHH-HH------HHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCC
T ss_pred CCCEEEEEEEecCCCcch-hH------HHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEee
Confidence 579999999999999988 32 2333333 235888887753 221 12222
Q ss_pred -----------------HHcCCCCCc------EEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 233 -----------------TYYKLDSIP------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 233 -----------------~~y~~~~~P------~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
..|++..+| .++||++ .|.++.++.|..+++++...|...+.
T Consensus 104 ~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~ 168 (171)
T 3cmi_A 104 IDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDK-KGKVYERYSSLTKPSSLSETIEELLK 168 (171)
T ss_dssp CBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECS-SSCEEEEECTTSCGGGGHHHHHHHHT
T ss_pred ccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECC-CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 236777889 9999997 79999999998899888888887765
No 175
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=96.70 E-value=0.0078 Score=59.28 Aligned_cols=97 Identities=14% Similarity=0.199 Sum_probs=71.0
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhh------ccCChhHHHHHhc-CEEEEEeecCChhHHHHHHHcCCCC
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRD------TWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDS 239 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rd------v~~~~~V~~~l~~-~fV~w~~~~~s~eg~~~~~~y~~~~ 239 (444)
.+|++++ .+++++||+++.++|. |..+... +| +.+.+.++. ++.+..++.+.. ..+++.|++..
T Consensus 19 ~~f~~~i----~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~--~~~a~~~~~~~v~~~~Vd~~~~--~~l~~~~~v~~ 89 (350)
T 1sji_A 19 KNFKQVL----KKYDVLCLYYHESVSS-DKVAQKQFQLKEIVL--ELVAQVLEHKDIGFVMVDAKKE--AKLAKKLGFDE 89 (350)
T ss_dssp HHHHHHH----TTCSEEEEEEECCSCS-SSTTSHHHHHHHHHH--HHHHHHGGGSSEEEEEEETTTT--HHHHHHHTCCS
T ss_pred HHHHHHH----hhCCeEEEEEECCCCc-chhhCchhhhhhHHH--HHHHHHHhhcCcEEEEEeCCCC--HHHHHhcCCCc
Confidence 3455544 4689999999999998 7554322 12 245556655 588887777543 56899999999
Q ss_pred CcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 240 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 240 ~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
||++.++. .|+ +....|..+.+.+...|...+.
T Consensus 90 ~Pt~~~~~--~g~-~~~~~G~~~~~~l~~~i~~~~~ 122 (350)
T 1sji_A 90 EGSLYVLK--GDR-TIEFDGEFAADVLVEFLLDLIE 122 (350)
T ss_dssp TTEEEEEE--TTE-EEEECSCCCHHHHHHHHHTTSS
T ss_pred cceEEEEE--CCc-EEEecCCCCHHHHHHHHHHhcC
Confidence 99999994 577 4577899999988888776654
No 176
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=96.69 E-value=0.0064 Score=52.24 Aligned_cols=85 Identities=11% Similarity=-0.029 Sum_probs=60.7
Q ss_pred CC-eEEEEEe-CCCchhhHHHHhhccCChhHHHHHh----cCEEEEEeecCChh---------------------HHHHH
Q 013379 180 DK-WLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSE---------------------GKKVC 232 (444)
Q Consensus 180 ~K-~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~----~~fV~w~~~~~s~e---------------------g~~~~ 232 (444)
+| |++|++. .++|..|.... +.+.++.+ .++.++.++.++.+ ...++
T Consensus 35 gk~~vvl~F~~a~~C~~C~~~~------~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 108 (160)
T 1xvw_A 35 GAKNVLLVFFPLAFTGICQGEL------DQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVS 108 (160)
T ss_dssp TTCEEEEEECSCTTSSHHHHHH------HHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHH
T ss_pred CCCCEEEEEECCCCCCchHHHH------HHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHH
Confidence 55 9999997 99999887653 33444433 36788888877643 34577
Q ss_pred HHcCCC----CCc--EEEEEeCCCCeeeEEEeCCCC----hHHHHHHHH
Q 013379 233 TYYKLD----SIP--VVLVVDPITGQKMRSWCGMVQ----PESLLEDLV 271 (444)
Q Consensus 233 ~~y~~~----~~P--~l~ii~p~tg~~v~~~~G~~~----~~~~l~~L~ 271 (444)
..|++. .+| +++||++ +|.++..+.|..+ .++++..|.
T Consensus 109 ~~~~v~~~~~~~p~~~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~ 156 (160)
T 1xvw_A 109 QAYGVFNEQAGIANRGTFVVDR-SGIIRFAEMKQPGEVRDQRLWTDALA 156 (160)
T ss_dssp HHTTCEETTTTEECSEEEEECT-TSBEEEEEECCTTCCCCHHHHHHHHH
T ss_pred HHcCCccccCCCeeeeEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 889987 899 9999997 7999988888653 344444443
No 177
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.68 E-value=0.0068 Score=48.93 Aligned_cols=72 Identities=18% Similarity=0.103 Sum_probs=58.9
Q ss_pred CCCceEEEEECCC----CceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-c
Q 013379 363 RSLLCRVGVRLPD----GRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-A 437 (444)
Q Consensus 363 ~~~~~~i~iRlP~----G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~ 437 (444)
..++++|.||+|+ |+.+.-....++||..|-.-|... .+.+.....|+.. +|. | +.+.||.+.|+.+ +
T Consensus 12 ~tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k-~gip~~qQrLI~~--GKi--L--~D~~TL~~y~I~~gs 84 (100)
T 1wju_A 12 TTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAET-FGLQENYIKIVIN--KKQ--L--QLGKTLEEQGVAHNV 84 (100)
T ss_dssp CCCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHH-TTCCSTTCEEEET--TEE--C--CTTSBHHHHTCCSSE
T ss_pred hcceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHH-HCcCHHHeEEEeC--CeE--C--CCCCcHHHcCCCCCC
Confidence 3579999999999 878999999999999999999886 4677778889854 664 5 5579999999995 5
Q ss_pred eEEE
Q 013379 438 MISV 441 (444)
Q Consensus 438 ~v~v 441 (444)
+|+|
T Consensus 85 ti~v 88 (100)
T 1wju_A 85 KAMV 88 (100)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 178
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=96.67 E-value=0.0088 Score=53.38 Aligned_cols=94 Identities=12% Similarity=0.113 Sum_probs=65.0
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecC--------Chh-HHHHH-HH-------------
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDD--------TSE-GKKVC-TY------------- 234 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~--------s~e-g~~~~-~~------------- 234 (444)
.+||+||++..++|..|......+ ..+.+-+. .++.++.++.+ +.+ ...++ ..
T Consensus 47 ~Gk~vll~F~atwC~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~ 123 (190)
T 2vup_A 47 KGSPLLIYNVASKCGYTKGGYETA---TTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINV 123 (190)
T ss_dssp TTSCEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBS
T ss_pred CCCEEEEEEecCCCCccHHHHHHH---HHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeeccc
Confidence 579999999999999996543221 12222222 35888877765 332 23344 22
Q ss_pred ----------------cCCCCCc------EEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhc
Q 013379 235 ----------------YKLDSIP------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 235 ----------------y~~~~~P------~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
|++..+| .++||++ .|+++.++.|..+++++...|...+..
T Consensus 124 ~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~ 186 (190)
T 2vup_A 124 NGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDR-DGVPVERFSPGASVKDIEKKLIPLLES 186 (190)
T ss_dssp SSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECT-TSCEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred CcccccHHHHHHHhhcCCcCCCccccccceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 3556678 8999996 799999999999999999888887753
No 179
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=96.66 E-value=0.0089 Score=53.57 Aligned_cols=93 Identities=13% Similarity=0.093 Sum_probs=65.9
Q ss_pred cCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecCChhH-----------------------HHHHH
Q 013379 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG-----------------------KKVCT 233 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~s~eg-----------------------~~~~~ 233 (444)
.+|++||++. .++|..|......+ ..+.+-+. .++.++.++.++.+. ..++.
T Consensus 44 ~gk~vvl~F~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 120 (195)
T 2bmx_A 44 PGKWRVVFFWPKDFTFVCPTEIAAF---SKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQ 120 (195)
T ss_dssp TTCEEEEEECSCTTSCCCHHHHHHH---HHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHH
T ss_pred CCCcEEEEEEcCCCCCCcHHHHHHH---HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHH
Confidence 4689999999 99999887653221 11222222 367788777776432 34667
Q ss_pred HcCCC-----CCcEEEEEeCCCCeeeEEEeCCC----ChHHHHHHHHhhhh
Q 013379 234 YYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFMD 275 (444)
Q Consensus 234 ~y~~~-----~~P~l~ii~p~tg~~v~~~~G~~----~~~~~l~~L~~~l~ 275 (444)
.|++. .+|+++||++ +|+++.++.|.. ++++++..|.....
T Consensus 121 ~~~v~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~ 170 (195)
T 2bmx_A 121 AAGVLNADGVADRVTFIVDP-NNEIQFVSATAGSVGRNVDEVLRVLDALQS 170 (195)
T ss_dssp HHTCBCTTSSBCEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHHC
T ss_pred HhCCcccCCCccceEEEEcC-CCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 78888 8999999996 699998888864 67888888877654
No 180
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=96.64 E-value=0.0032 Score=53.15 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=60.1
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh----cCEEEEEeecCChhH------------------------HH
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEG------------------------KK 230 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~----~~fV~w~~~~~s~eg------------------------~~ 230 (444)
.+|++||++..++|..|.... +.+.++.+ .++.++.++.+.... ..
T Consensus 31 ~gk~vll~F~a~wC~~C~~~~------~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 104 (143)
T 4fo5_A 31 LGRYTLLNFWAAYDAESRARN------VQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESE 104 (143)
T ss_dssp SCCEEEEEEECTTCHHHHHHH------HHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSH
T ss_pred CCCEEEEEEEcCcCHHHHHHH------HHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchH
Confidence 579999999999999998764 45555554 358888887764321 35
Q ss_pred HHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHH
Q 013379 231 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 271 (444)
Q Consensus 231 ~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~ 271 (444)
++..|++..+|+.+||++ +|+++.+. .+++++.+.|.
T Consensus 105 ~~~~~~v~~~P~~~lid~-~G~i~~~~---~~~~~l~~~l~ 141 (143)
T 4fo5_A 105 LYKKYDLRKGFKNFLIND-EGVIIAAN---VTPEKLTEILK 141 (143)
T ss_dssp HHHHTTGGGCCCEEEECT-TSBEEEES---CCHHHHHHHHT
T ss_pred HHHHcCCCCCCcEEEECC-CCEEEEcc---CCHHHHHHHHH
Confidence 677899999999999997 68887663 34565555443
No 181
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=96.64 E-value=0.0082 Score=52.00 Aligned_cols=87 Identities=17% Similarity=0.169 Sum_probs=62.6
Q ss_pred cCCeEEEEEeCCCchh-hHHHHhhccCChhHHHHHh-------cCEEEEEeecCC----hhH------------------
Q 013379 179 QDKWLLVNLQSTKEFS-SHMLNRDTWANEAVSQTIS-------TNFIFWQVYDDT----SEG------------------ 228 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~-~~~f~rdv~~~~~V~~~l~-------~~fV~w~~~~~s----~eg------------------ 228 (444)
.+||+||++..++|.. |.... +.+.++.+ .++.++.++.+. ++.
T Consensus 34 ~gk~vll~f~~~~C~~~C~~~~------~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~ 107 (172)
T 2k6v_A 34 QDKVVLLFFGFTRCPDVCPTTL------LALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGS 107 (172)
T ss_dssp TTSEEEEEEECTTCSSHHHHHH------HHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCC
T ss_pred CCCEEEEEEECCCCcchhHHHH------HHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCC
Confidence 5799999999999996 87653 34444443 167788777652 222
Q ss_pred ----HHHHHHcCC---------------CCCcEEEEEeCCCCeeeEEEeCCC--ChHHHHHHHHhh
Q 013379 229 ----KKVCTYYKL---------------DSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPF 273 (444)
Q Consensus 229 ----~~~~~~y~~---------------~~~P~l~ii~p~tg~~v~~~~G~~--~~~~~l~~L~~~ 273 (444)
..+++.|++ ..+|+++||+ .|+++.++.|.. +++++.+.|.+.
T Consensus 108 ~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid--~G~i~~~~~g~~~~~~~~l~~~l~~l 171 (172)
T 2k6v_A 108 PEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK--EGRLVLLYSPDKAEATDRVVADLQAL 171 (172)
T ss_dssp HHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE--TTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE--CCEEEEEECCCCCCCHHHHHHHHHHh
Confidence 345555553 4679999999 799999998877 888888887754
No 182
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=96.63 E-value=0.0077 Score=53.50 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=65.1
Q ss_pred cCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecCChhH-----------------------HHHHH
Q 013379 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG-----------------------KKVCT 233 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~s~eg-----------------------~~~~~ 233 (444)
.+|++||++. .++|..|......+ ..+.+-+. .++.++.++.++.+. ..++.
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 106 (187)
T 1we0_A 30 KGKWSIVVFYPADFSFVCPTELEDV---QKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISR 106 (187)
T ss_dssp SSSEEEEEECSCTTCSSCTHHHHHH---HHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHH
T ss_pred CCCCEEEEEECCCCCcchHHHHHHH---HHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHH
Confidence 4689999999 88998887653221 11222222 367777777776422 34677
Q ss_pred HcCCC------CCcEEEEEeCCCCeeeEEEeCCC----ChHHHHHHHHhhhh
Q 013379 234 YYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFMD 275 (444)
Q Consensus 234 ~y~~~------~~P~l~ii~p~tg~~v~~~~G~~----~~~~~l~~L~~~l~ 275 (444)
.|++. .+|+++|||+ .|.++.++.|.. ++++++..|.....
T Consensus 107 ~~~v~~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~ 157 (187)
T 1we0_A 107 QFDVLNEETGLADRGTFIIDP-DGVIQAIEINADGIGRDASTLINKVKAAQY 157 (187)
T ss_dssp HTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTSCCCTTHHHHHHHHHHH
T ss_pred HhCCCcCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 88887 8999999996 799998888854 67888887776654
No 183
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=96.63 E-value=0.012 Score=58.56 Aligned_cols=101 Identities=14% Similarity=0.126 Sum_probs=74.1
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhcc----CChhHHHHHhc-CEEEEEeecCChhHHHHHHHcCCCC
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTW----ANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDS 239 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~----~~~~V~~~l~~-~fV~w~~~~~s~eg~~~~~~y~~~~ 239 (444)
-..+|++++ ++++++||+++.+||..| .+|+.+- .-+.+...++. ++.+..++.+. ...+|+.|+|..
T Consensus 19 t~~~f~~~i----~~~~~vlV~FyApWC~~~-~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~--~~~l~~~~~V~~ 91 (367)
T 3us3_A 19 NAKNYKNVF----KKYEVLALLYHEPPEDDK-ASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK--DAAVAKKLGLTE 91 (367)
T ss_dssp CTTTHHHHH----HHCSEEEEEEECCCCSSH-HHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTT--THHHHHHHTCCS
T ss_pred CHHHHHHHH----hhCCeEEEEEECCCchhH-HHhhhhccccHHHHHHHHHhhcCCceEEEEeCcc--cHHHHHHcCCCc
Confidence 456788877 357999999999999775 4444210 11344555554 58888777654 457999999999
Q ss_pred CcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 240 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 240 ~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
||++.++. .|+.+ ...|..+++.++..|.+.+.
T Consensus 92 ~PTl~~f~--~G~~~-~y~G~~~~~~i~~~i~~~~~ 124 (367)
T 3us3_A 92 EDSIYVFK--EDEVI-EYDGEFSADTLVEFLLDVLE 124 (367)
T ss_dssp TTEEEEEE--TTEEE-ECCSCCSHHHHHHHHHHHHS
T ss_pred CceEEEEE--CCcEE-EeCCCCCHHHHHHHHHHhcC
Confidence 99999997 57764 67898999999888877654
No 184
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=96.58 E-value=0.0029 Score=44.78 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=34.8
Q ss_pred HHHHHhhcccccCC-CHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 11 QSMVSSFLEIAVGQ-TAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 11 ~~~i~~F~~itt~~-~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
++.|.+.+++ |- +.+.|+..|.+++||++.||+..|++
T Consensus 13 ~~~l~~L~~M--GF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 13 QQQLEQLSAM--GFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp HHHHHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 5689999999 77 99999999999999999999998874
No 185
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=96.56 E-value=0.0072 Score=54.26 Aligned_cols=93 Identities=10% Similarity=0.062 Sum_probs=64.4
Q ss_pred cCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChh--------------------------HHHH
Q 013379 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE--------------------------GKKV 231 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~e--------------------------g~~~ 231 (444)
.+|+++|++. .++|..|......+= .-..++-..++.++.++.++.+ ...+
T Consensus 32 ~gk~vvl~F~~a~~C~~C~~~~~~l~--~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 109 (198)
T 1zof_A 32 GKNGVILFFWPKDFTFVCPTEIIAFD--KRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSI 109 (198)
T ss_dssp CSSEEEEEECSCTTCSSCCTHHHHHH--HTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHH
T ss_pred CCCcEEEEEECCCCCCchHHHHHHHH--HHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHH
Confidence 5789999999 899988876532210 0111222346888888877643 2356
Q ss_pred HHHcCCC-----CCcEEEEEeCCCCeeeEEEeCCC----ChHHHHHHHHhhh
Q 013379 232 CTYYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 274 (444)
Q Consensus 232 ~~~y~~~-----~~P~l~ii~p~tg~~v~~~~G~~----~~~~~l~~L~~~l 274 (444)
++.|++. .+|+++||++ +|.++.++.|.. ++++++..|....
T Consensus 110 ~~~~~v~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 160 (198)
T 1zof_A 110 SRDYDVLFEEAIALRGAFLIDK-NMKVRHAVINDLPLGRNADEMLRMVDALL 160 (198)
T ss_dssp HHHTTCEETTTEECEEEEEEET-TTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred HHHhCCcccCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 7788888 8999999997 799998888865 5667777666554
No 186
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=96.54 E-value=0.0065 Score=62.40 Aligned_cols=100 Identities=11% Similarity=0.170 Sum_probs=75.6
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
..+|++++ ...+|++||+++.+||..|..+...+ ..+.+.+.. ++++..++.+.. .++..|++..||++
T Consensus 359 ~~~~~~~~---~~~~k~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~~~v~~~~id~~~~---~~~~~~~v~~~Pt~ 429 (481)
T 3f8u_A 359 AENFDEIV---NNENKDVLIEFYAPWCGHCKNLEPKY---KELGEKLSKDPNIVIAKMDATAN---DVPSPYEVRGFPTI 429 (481)
T ss_dssp TTTHHHHH---TCTTCEEEEEEECTTBHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETTSS---CCCTTCCCCSSSEE
T ss_pred ccCHHHHh---hcCCCcEEEEEecCcChhHHHhhHHH---HHHHHHhccCCCEEEEEEECCch---hhHhhCCCcccCEE
Confidence 45676655 34689999999999999999986433 344444544 699998887665 46778999999999
Q ss_pred EEEeCCCCe-eeEEEeCCCChHHHHHHHHhhhh
Q 013379 244 LVVDPITGQ-KMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 244 ~ii~p~tg~-~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
.++.. .|. .+.+..|..+.++|+..|.+...
T Consensus 430 ~~~~~-~~~~~~~~~~G~~~~~~l~~~l~~~~~ 461 (481)
T 3f8u_A 430 YFSPA-NKKLNPKKYEGGRELSDFISYLQREAT 461 (481)
T ss_dssp EEECT-TCTTSCEECCSCCSHHHHHHHHHHHCS
T ss_pred EEEeC-CCeEeeeEeCCCCCHHHHHHHHHHhcC
Confidence 98874 344 26678899999999888877654
No 187
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.52 E-value=0.0025 Score=49.53 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=37.8
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (444)
++.|.+.+++ |-+.+.|+..|.+++||++.|++..|++.+.
T Consensus 30 ee~I~~Lv~M--GF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 30 QESINQLVYM--GFDTVVAEAALRVFGGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp HHHHHHHHHH--SCCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 5689999999 9999999999999999999999999996553
No 188
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=96.49 E-value=0.023 Score=48.89 Aligned_cols=93 Identities=14% Similarity=0.157 Sum_probs=61.0
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh-cCEEEEEeecCC--------h-hHHHH-HHHc------------
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDT--------S-EGKKV-CTYY------------ 235 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~s--------~-eg~~~-~~~y------------ 235 (444)
.+||+||++..++|..|......+ ..+.+-+. .++.+++++.+. . +...+ ...+
T Consensus 30 ~gk~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 106 (169)
T 2v1m_A 30 RGHVCLIVNVACKCGATDKNYRQL---QEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKV 106 (169)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCC
T ss_pred CCCEEEEEEeeccCCchHHHHHHH---HHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEee
Confidence 479999999999999886543221 11222222 357777776642 1 22333 1222
Q ss_pred -----------------C-----CCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 236 -----------------K-----LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 236 -----------------~-----~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
+ +..+|.++||++ .|.++.++.|..+++++...|...+.
T Consensus 107 ~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~ 167 (169)
T 2v1m_A 107 NGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDR-QGQPVKRYSPTTAPYDIEGDIMELLE 167 (169)
T ss_dssp SSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECT-TSCEEEEECTTSCGGGGHHHHHHHHH
T ss_pred cCccccHHHHHHHhhcCCccCCcccccceEEEECC-CCCEEEEcCCCCCHHHHHHHHHHHhc
Confidence 2 334589999996 79999999998889888888877764
No 189
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=96.42 E-value=0.013 Score=52.91 Aligned_cols=93 Identities=13% Similarity=0.133 Sum_probs=64.6
Q ss_pred cCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhH--------------------------HHH
Q 013379 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KKV 231 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg--------------------------~~~ 231 (444)
.+||+||++. .++|..|......+ +.-..+|-..++.+++++.++.+. ..+
T Consensus 35 ~gk~vvl~F~~~~~C~~C~~~~~~l--~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~ 112 (202)
T 1uul_A 35 KGKWLVLFFYPMDFTFVCPTEICQF--SDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCI 112 (202)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHHH--HHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHH
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHH
Confidence 4789999999 89999888653221 111122223468888888876432 246
Q ss_pred HHHcCCC------CCcEEEEEeCCCCeeeEEEeCCC----ChHHHHHHHHhhh
Q 013379 232 CTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 274 (444)
Q Consensus 232 ~~~y~~~------~~P~l~ii~p~tg~~v~~~~G~~----~~~~~l~~L~~~l 274 (444)
+..|++. .+|+++||++ .|.++.++.|.. +.++++..|....
T Consensus 113 ~~~ygv~~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~ell~~l~~l~ 164 (202)
T 1uul_A 113 MKSYGVLKEEDGVAYRGLFIIDP-KQNLRQITVNDLPVGRDVDEALRLVKAFQ 164 (202)
T ss_dssp HHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HHHcCCccCCCCceeeEEEEECC-CCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence 6778887 8999999997 699888877753 4577877776554
No 190
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=96.42 E-value=0.0036 Score=45.19 Aligned_cols=40 Identities=23% Similarity=0.458 Sum_probs=36.7
Q ss_pred hHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013379 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (444)
Q Consensus 9 ~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (444)
+++.+|+.|+-- ||+++..|+.+|+--||||..|++.|=.
T Consensus 16 dmdavls~fvrs-tgaepgLaRDlleGKnWDl~AAL~D~eq 55 (73)
T 2l2d_A 16 DMDAVLSDFVRS-TGAEPGLARDLLEGKNWDLTAALSDYEQ 55 (73)
T ss_dssp CHHHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCcchhHHhhccCCccHhHHhhhHHH
Confidence 457799999999 9999999999999999999999999854
No 191
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=96.42 E-value=0.015 Score=52.11 Aligned_cols=92 Identities=10% Similarity=0.070 Sum_probs=64.7
Q ss_pred cCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHH-hcCEEEEEeecCChhH--------------------------HH
Q 013379 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDDTSEG--------------------------KK 230 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l-~~~fV~w~~~~~s~eg--------------------------~~ 230 (444)
.+||+||++. .++|..|......+ ..+.+-+ ..++.++.++.++.+. ..
T Consensus 33 ~gk~vvl~F~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~ 109 (197)
T 1qmv_A 33 KGKYVVLFFYPLDFTFVAPTEIIAF---SNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRR 109 (197)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHH---HHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHH---HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhCCCCCCceEEEECCcHH
Confidence 4689999999 89999888754322 1222222 2468888888876542 24
Q ss_pred HHHHcCCC------CCcEEEEEeCCCCeeeEEEeCCC----ChHHHHHHHHhhh
Q 013379 231 VCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 274 (444)
Q Consensus 231 ~~~~y~~~------~~P~l~ii~p~tg~~v~~~~G~~----~~~~~l~~L~~~l 274 (444)
++..|++. .+|.++||++ .|.++..+.|.. +.++++..|....
T Consensus 110 ~~~~~gv~~~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~e~l~~l~~l~ 162 (197)
T 1qmv_A 110 LSEDYGVLKTDEGIAYRGLFIIDG-KGVLRQITVNDLPVGRSVDEALRLVQAFQ 162 (197)
T ss_dssp HHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HHHHcCCccCCCCceeeEEEEECC-CCcEEEEEeCCCCCCCCHHHHHHHHHhcc
Confidence 67788887 7999999997 699888887754 4577777666543
No 192
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=96.38 E-value=0.005 Score=42.35 Aligned_cols=38 Identities=8% Similarity=0.044 Sum_probs=33.5
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (444)
++.|++.+++ +-.+...+++.|.+++||++.||+..|+
T Consensus 8 ~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 8 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 5689999999 3357888999999999999999999886
No 193
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.35 E-value=0.0044 Score=44.16 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=35.7
Q ss_pred HHHHHhhcccccCC-CHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013379 11 QSMVSSFLEIAVGQ-TAETAVQFLQATSWKLDEAIQLFYVGNES 53 (444)
Q Consensus 11 ~~~i~~F~~itt~~-~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (444)
++.|++.+++ |- +...+++.|.+++||++.||+..|+.++.
T Consensus 10 ~~~l~~L~~M--GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 10 QVQLEQLRSM--GFLNREANLQALIATGGDVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHH--TCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 5689999999 66 67778999999999999999999987543
No 194
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=96.32 E-value=0.018 Score=52.64 Aligned_cols=84 Identities=6% Similarity=0.043 Sum_probs=63.4
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEE
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 256 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~ 256 (444)
.+++++|++.+++|..|..+. +.+.++.. .++.+..++.+ +...++..|++..+|+++| +|+ +.+
T Consensus 135 ~~~~~~v~F~a~wC~~C~~~~------~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~----~G~-~~~ 201 (229)
T 2ywm_A 135 DIPIEIWVFVTTSCGYCPSAA------VMAWDFALANDYITSKVIDAS--ENQDLAEQFQVVGVPKIVI----NKG-VAE 201 (229)
T ss_dssp CSCEEEEEEECTTCTTHHHHH------HHHHHHHHHCTTEEEEEEEGG--GCHHHHHHTTCCSSSEEEE----GGG-TEE
T ss_pred CCCeEEEEEECCCCcchHHHH------HHHHHHHHHCCCeEEEEEECC--CCHHHHHHcCCcccCEEEE----CCE-EEE
Confidence 345558899999999999885 33344333 36777766654 3456889999999999988 577 566
Q ss_pred EeCCCChHHHHHHHHhhhh
Q 013379 257 WCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 257 ~~G~~~~~~~l~~L~~~l~ 275 (444)
+.|..+.++|...|.+.+.
T Consensus 202 ~~G~~~~~~l~~~l~~~~~ 220 (229)
T 2ywm_A 202 FVGAQPENAFLGYIMAVYE 220 (229)
T ss_dssp EESCCCHHHHHHHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHhh
Confidence 8899999999988887765
No 195
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=96.32 E-value=0.028 Score=44.12 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=57.0
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
+...+|.||..+|+.+.-.+..++||.+|-.-|.... +.+....+|+.. ++. | +.+.||.++|+. +++|.+.
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~i~l~ 87 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 87 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCEEEET--TEE--C--CTTCBTGGGTCCTTCEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhh-CCChhhEEEEEC--CeE--C--CCcCcHHHCCCCCCCEEEEE
Confidence 5678999999999999999999999999999998864 556666677753 332 4 457899999998 4566554
No 196
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=96.31 E-value=0.017 Score=48.44 Aligned_cols=89 Identities=11% Similarity=0.049 Sum_probs=66.1
Q ss_pred HHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh---cCEEEEEeecCChhHHHHHHHcCCCC--CcEEEEEeCCCC
Q 013379 177 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDS--IPVVLVVDPITG 251 (444)
Q Consensus 177 ~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~---~~fV~w~~~~~s~eg~~~~~~y~~~~--~P~l~ii~p~tg 251 (444)
.+..++++|++..+ |-.|..+. +.+.++-+ ..+.|..++++ +...++..|++.+ +|+++|+....|
T Consensus 20 ~~~~~pv~v~f~a~-~~~c~~~~------p~l~~~A~~~~gk~~f~~vd~d--~~~~~a~~~gi~~~~iPtl~i~~~~~g 90 (133)
T 2djk_A 20 MSAGIPLAYIFAET-AEERKELS------DKLKPIAEAQRGVINFGTIDAK--AFGAHAGNLNLKTDKFPAFAIQEVAKN 90 (133)
T ss_dssp HHTTSCEEEEECSC-SSSHHHHH------HHHHHHHHSSTTTSEEEEECTT--TTGGGTTTTTCCSSSSSEEEEECTTTC
T ss_pred hcCCCCEEEEEecC-hhhHHHHH------HHHHHHHHHhCCeEEEEEEchH--HhHHHHHHcCCCcccCCEEEEEecCcC
Confidence 35678999999988 77887653 44444444 45777766765 3445889999998 999999985346
Q ss_pred eeeEEEe--CCCChHHHHHHHHhhhh
Q 013379 252 QKMRSWC--GMVQPESLLEDLVPFMD 275 (444)
Q Consensus 252 ~~v~~~~--G~~~~~~~l~~L~~~l~ 275 (444)
++. .+. |..+.+.+...|..+++
T Consensus 91 ~~~-~~~~~g~~~~~~l~~fi~~~l~ 115 (133)
T 2djk_A 91 QKF-PFDQEKEITFEAIKAFVDDFVA 115 (133)
T ss_dssp CBC-CCCSSSCCCHHHHHHHHHHHHH
T ss_pred ccc-CCCCccccCHHHHHHHHHHHHc
Confidence 663 554 88999999888888886
No 197
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=96.30 E-value=0.0056 Score=66.99 Aligned_cols=98 Identities=17% Similarity=0.218 Sum_probs=68.2
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii 246 (444)
.+|++++ +.++++||++++++|..|+.+...+ +.+.+.+...+.+..++.+.. ..++..|++..||++.++
T Consensus 124 ~~f~~~i----~~~~~~lv~Fya~wC~~C~~~~p~~---~~~a~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~ 194 (780)
T 3apo_A 124 REFDAAV----NSGELWFVNFYSPGSSHSHDLAPTW---REFAKEVDGLLRIGAVNCGDD--RMLCRMKGVNSYPSLFIF 194 (780)
T ss_dssp HHHHHHH----TSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTC--SSCC--------CEEEEE
T ss_pred HhHHhhh----cCCCcEEEEEeCCCCcchhHhhHHH---HHHHHHhcCceEEEEEeCCCc--HHHHHHcCCceeeeEEEE
Confidence 3555555 7899999999999999999996533 455555666777887776543 468889999999999988
Q ss_pred eCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 247 DPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 247 ~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
. .|..+....|..+++.+...|.+.+.
T Consensus 195 ~--~g~~~~~~~G~~~~~~l~~~l~~~~~ 221 (780)
T 3apo_A 195 R--SGMAAVKYNGDRSKESLVAFAMQHVR 221 (780)
T ss_dssp C--TTSCCEECCSCSCHHHHHHHHHTTSC
T ss_pred e--CCcEeeEecCCCCHHHHHHHHHHhch
Confidence 4 68777788898888888887776553
No 198
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=96.30 E-value=0.02 Score=52.40 Aligned_cols=93 Identities=13% Similarity=0.121 Sum_probs=64.5
Q ss_pred cCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhH--------------------------HHH
Q 013379 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KKV 231 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg--------------------------~~~ 231 (444)
.+||+||++. .++|..|......+ ++...+|-..++.+++++.++.+. ..+
T Consensus 51 ~gk~vvl~F~pa~~C~~C~~~~~~l--~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~ 128 (213)
T 2i81_A 51 GKKYVLLYFYPLDFTFVCPSEIIAL--DKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSI 128 (213)
T ss_dssp TTCEEEEEECSCTTSSHHHHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHH
T ss_pred CCCeEEEEEEcCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHH
Confidence 5689999999 89999887654221 111122223578888888776542 246
Q ss_pred HHHcCCC-----CCcEEEEEeCCCCeeeEEEeCCC----ChHHHHHHHHhhh
Q 013379 232 CTYYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 274 (444)
Q Consensus 232 ~~~y~~~-----~~P~l~ii~p~tg~~v~~~~G~~----~~~~~l~~L~~~l 274 (444)
+..|++. .+|.++||++ .|.++..+.|.. +.++++..|....
T Consensus 129 ~~~ygv~~~~g~~~p~~~lID~-~G~i~~~~~~~~~~~~~~~ell~~l~~l~ 179 (213)
T 2i81_A 129 SKDYNVLFDDSVSLRAFVLIDM-NGIVQHLLVNNLAIGRSVDEILRIIDAIQ 179 (213)
T ss_dssp HHHTTCEETTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HHHhCCccccCCcccEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 6778887 8999999997 699888876643 4778887776554
No 199
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=96.29 E-value=0.036 Score=50.39 Aligned_cols=91 Identities=18% Similarity=0.256 Sum_probs=66.2
Q ss_pred cCCeEEEEEeCC-CchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeee-EE
Q 013379 179 QDKWLLVNLQST-KEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM-RS 256 (444)
Q Consensus 179 ~~K~LlVyl~~~-~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v-~~ 256 (444)
+++.+||++..+ +|..|+.+... | +++.+. ..++.+..++.+.++...++..|++..+|++.|+. .|+.. .+
T Consensus 21 ~~~v~lv~f~~~~~C~~C~~~~~~-~--~~la~~-~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~ 94 (226)
T 1a8l_A 21 VNPVKLIVFVRKDHCQYCDQLKQL-V--QELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQ--DGKDFGVR 94 (226)
T ss_dssp CSCEEEEEEECSSSCTTHHHHHHH-H--HHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEE--TTBCCSEE
T ss_pred CCCeEEEEEecCCCCchhHHHHHH-H--HHHHhh-CCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEc--CCceeeEE
Confidence 456677999999 99999988432 2 112222 35688888898887788999999999999999995 46543 67
Q ss_pred EeCCCChHHHHHHHHhhhh
Q 013379 257 WCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 257 ~~G~~~~~~~l~~L~~~l~ 275 (444)
..|..+.+++...+...+.
T Consensus 95 ~~G~~~~~~l~~~l~~~l~ 113 (226)
T 1a8l_A 95 YFGLPAGHEFAAFLEDIVD 113 (226)
T ss_dssp EESCCCTTHHHHHHHHHHH
T ss_pred EeccCcHHHHHHHHHHHHh
Confidence 7888777777666655543
No 200
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.26 E-value=0.0041 Score=44.88 Aligned_cols=48 Identities=13% Similarity=0.366 Sum_probs=42.2
Q ss_pred ccCCcchHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013379 3 SVLSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (444)
Q Consensus 3 ~~l~~~~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (444)
+.||..+.+ .|++.+++ |-+.+.|+.-|+++|.|+|.|++=.|++.+.
T Consensus 13 ~~ls~se~e-~V~~LvsM--GFs~~qA~kALKat~~NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 13 QMLSPSERQ-CVETVVNM--GYSYECVLRAMKKKGENIEQILDYLFAHSGP 60 (63)
T ss_dssp HTCCHHHHH-HHHHHHHH--HCCHHHHHHHHHHHCSCHHHHHHHHHHHSCC
T ss_pred HhhCcchHH-HHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 457777744 89999999 9999999999999999999999999998664
No 201
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=96.25 E-value=0.024 Score=42.37 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=53.9
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
+|.||.++|+.+.-.+..++||.+|..-+.... +.+.....|+.. .+. | +.+.||.++|+.+ ++|.+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-~i~~~~q~L~~~--g~~--L--~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLIYS--GKQ--M--NDEKTAADYKILGGSVLHLV 70 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHH-CcChHHEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 688999999999999999999999999998764 556667777753 443 4 4578999999984 555554
No 202
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=96.24 E-value=0.019 Score=52.69 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=65.0
Q ss_pred cCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhH--------------------------HHH
Q 013379 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KKV 231 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg--------------------------~~~ 231 (444)
.+||+||++. .++|..|......+ +....+|-..++.+++++.++.+. ..+
T Consensus 55 ~Gk~vll~F~pa~~Cp~C~~~~~~l--~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i 132 (220)
T 1zye_A 55 KGKYLVLFFYPLDFTFVCPTEIIAF--SDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQI 132 (220)
T ss_dssp TTSEEEEEECSCTTCSSSHHHHHHH--HHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHH
Confidence 4689999999 89999887653221 111122223478888888776432 356
Q ss_pred HHHcCCC------CCcEEEEEeCCCCeeeEEEeCCC----ChHHHHHHHHhhhh
Q 013379 232 CTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFMD 275 (444)
Q Consensus 232 ~~~y~~~------~~P~l~ii~p~tg~~v~~~~G~~----~~~~~l~~L~~~l~ 275 (444)
+..|++. .+|.++|||+ .|.++.++.|.. +.++++..|.....
T Consensus 133 ~~~ygv~~~~~g~~~P~~~liD~-~G~I~~~~~g~~~~~~~~~ell~~l~~l~~ 185 (220)
T 1zye_A 133 SRDYGVLLEGPGLALRGLFIIDP-NGVIKHLSVNDLPVGRSVEETLRLVKAFQF 185 (220)
T ss_dssp HHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHHH
T ss_pred HHHhCCeecCCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 7788887 8999999997 699888877753 45788877776543
No 203
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=96.24 E-value=0.016 Score=51.59 Aligned_cols=93 Identities=12% Similarity=0.100 Sum_probs=63.8
Q ss_pred cCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhH--------------------------HHH
Q 013379 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KKV 231 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg--------------------------~~~ 231 (444)
.+||++|++. .++|..|......+= ....+|-..++.+++++.++.+. ..+
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~l~--~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~ 107 (192)
T 2h01_A 30 GKKYVLLYFYPLDFTFVCPSEIIALD--KALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSI 107 (192)
T ss_dssp TTCEEEEEECSCSSCSSCCHHHHHHH--HTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHH--HHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHH
Confidence 5789999999 889988876532210 11112223568888888776442 346
Q ss_pred HHHcCCC-----CCcEEEEEeCCCCeeeEEEeCCC----ChHHHHHHHHhhh
Q 013379 232 CTYYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 274 (444)
Q Consensus 232 ~~~y~~~-----~~P~l~ii~p~tg~~v~~~~G~~----~~~~~l~~L~~~l 274 (444)
+..|++. .+|+++|||+ .|.++..+.|.. +.++++..|....
T Consensus 108 ~~~~gv~~~~g~~~P~~~liD~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 158 (192)
T 2h01_A 108 ARSYDVLFNESVALRAFVLIDK-QGVVQHLLVNNLALGRSVDEILRLIDALQ 158 (192)
T ss_dssp HHHTTCEETTTEECCEEEEECT-TSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred HHHhCCcCcCCceeeEEEEEcC-CCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 7788888 8999999997 699888887743 4677777666554
No 204
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.21 E-value=0.0069 Score=45.98 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=37.9
Q ss_pred HHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013379 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (444)
Q Consensus 10 ~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (444)
.++.|.+.+++ |-+.+.|+..|.+++||++.|++-.|++.+.
T Consensus 29 ~~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 29 DQSSVDTLLSF--GFAEDVARKALKASGGDIEKATDWVFNNSGP 70 (73)
T ss_dssp CHHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 35689999999 9999999999999999999999999987553
No 205
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=96.14 E-value=0.015 Score=51.73 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=61.4
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHH---h-cCEEEEEeecC--------Ch-hHHHHHH------------
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI---S-TNFIFWQVYDD--------TS-EGKKVCT------------ 233 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l---~-~~fV~w~~~~~--------s~-eg~~~~~------------ 233 (444)
.+|++||++..++|..|.... +.+.++. + .++.+++++.+ +. +...++.
T Consensus 45 ~Gk~vlv~F~atwC~~C~~~~------p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~ 118 (187)
T 3dwv_A 45 KGSPLLIYNVASKCGYTKGGY------ETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAK 118 (187)
T ss_dssp TTSCEEEEEECCBCSCCTTHH------HHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCC
T ss_pred CCCEEEEEEecCCCCCcHHHH------HHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeec
Confidence 578999999999998887643 3333333 2 35777777654 11 2222222
Q ss_pred ---------------------HcCCCCCc---EEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 234 ---------------------YYKLDSIP---VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 234 ---------------------~y~~~~~P---~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
.|++..+| +++|||+ .|.++.++.|..+++++...|...+.
T Consensus 119 ~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~-~G~i~~~~~g~~~~~~l~~~i~~lL~ 183 (187)
T 3dwv_A 119 INVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDR-DGVPVERFSPGASVKDIEEKLIPLLG 183 (187)
T ss_dssp BCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECT-TSCEEEEECTTCCHHHHHHHHHHHC-
T ss_pred cccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECC-CCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 12334567 9999997 79999999999999999888888775
No 206
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=96.13 E-value=0.027 Score=49.64 Aligned_cols=87 Identities=11% Similarity=0.083 Sum_probs=57.3
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHH---h-cCEEEEEeecC--------Ch-hHHHHHHHc----------
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI---S-TNFIFWQVYDD--------TS-EGKKVCTYY---------- 235 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l---~-~~fV~w~~~~~--------s~-eg~~~~~~y---------- 235 (444)
.+||+||++..++|..|.... +.+.++. . .++.++.++.+ +. +...++..|
T Consensus 46 ~gk~vll~F~atwC~~C~~~~------~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~ 119 (183)
T 2obi_A 46 RGFVCIVTNVASQCGKTEVNY------TQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKI 119 (183)
T ss_dssp TTSEEEEEEECSSSTTHHHHH------HHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCC
T ss_pred CCCEEEEEEeCCCCCCcHHHH------HHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeee
Confidence 479999999999998886653 2333333 2 35777777654 22 223333322
Q ss_pred ---------------------C-----CCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHh
Q 013379 236 ---------------------K-----LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 272 (444)
Q Consensus 236 ---------------------~-----~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~ 272 (444)
+ +..+|.++||++ .|+++.++.|..+++++...|..
T Consensus 120 d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ 181 (183)
T 2obi_A 120 CVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK-NGCVVKRYGPMEEPLVIEKDLPH 181 (183)
T ss_dssp CCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECT-TSCEEEEECTTSCTHHHHTTSGG
T ss_pred ccCCcchhHHHHHhhccCCCCCcccccccccceEEEECC-CCCEEEEeCCCCCHHHHHHHHHH
Confidence 2 223589999996 79999999998888877665544
No 207
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=96.12 E-value=0.032 Score=43.57 Aligned_cols=72 Identities=11% Similarity=0.037 Sum_probs=56.7
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCceEEEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVT 442 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v~v~ 442 (444)
+...+|.||..+|+.+.-.+..++||.+|-..|.... +.+....+|+.. .+. | +.+.||.++|+.+++|.+.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~qrLi~~--Gk~--L--~d~~tL~~~~i~g~~i~l~ 74 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASV-SIPSEKQRLIYQ--GRV--L--QDDKKLQEYNVGGKVIHLV 74 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTSBGGGGTCTTEEEEEE
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHh-CCCHHHEEEEEC--CeE--C--CCCCCHHHcCCCCcEEEEE
Confidence 4578999999999999999999999999999998764 556666777763 442 4 4488999999965666554
No 208
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=96.12 E-value=0.027 Score=43.15 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=55.7
Q ss_pred ceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 366 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 366 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
..+|.||.++|+.+.-.+..++||.+|-.-|.... +.+....+|+. ..+. | +.+.||.++|+. +++|.+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~i~~~~qrL~~--~g~~--L--~d~~tL~~~~i~~~~~l~l~ 73 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKWSTLFLL 73 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCEEEE--TTEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH-CcChHHEEEEE--CCEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 47899999999999999999999999999998864 55666777874 3543 4 447899999998 4556554
No 209
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=96.10 E-value=0.04 Score=49.58 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=60.9
Q ss_pred cCCeEEEEEeCCCchh-hHHHHhhccCChhHHHHHh----cCEEEEEeecC----Chh----------------------
Q 013379 179 QDKWLLVNLQSTKEFS-SHMLNRDTWANEAVSQTIS----TNFIFWQVYDD----TSE---------------------- 227 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~-~~~f~rdv~~~~~V~~~l~----~~fV~w~~~~~----s~e---------------------- 227 (444)
.+||+||++..++|.. |......+ ..+.+-+. .++.++.++.+ +++
T Consensus 40 ~Gk~vlv~F~at~C~~vC~~~~~~l---~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~ 116 (200)
T 2b7k_A 40 LGKFSIIYFGFSNCPDICPDELDKL---GLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDE 116 (200)
T ss_dssp TTSCEEEEEECTTCCSHHHHHHHHH---HHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHH
T ss_pred CCCEEEEEEECCCCcchhHHHHHHH---HHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHH
Confidence 4688888888888886 76542111 11112122 25666666655 222
Q ss_pred HHHHHHHcCCC-CCc---------------EEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 228 GKKVCTYYKLD-SIP---------------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 228 g~~~~~~y~~~-~~P---------------~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
...+++.|++. ..| .++||++ .|.++..+.|..+++.+...|...++..
T Consensus 117 ~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~-~G~i~~~~~g~~~~~~~~~~i~~~l~~l 181 (200)
T 2b7k_A 117 VKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDP-EGQFVDALGRNYDEKTGVDKIVEHVKSY 181 (200)
T ss_dssp HHHHHHHTTC--------------CTTTCCCEEEECT-TSCEEEEECTTCCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHcCcEEeeccccCCCCCceeeecceEEEECC-CCcEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 24567778775 333 7899997 7999999988888888988888888743
No 210
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.05 E-value=0.011 Score=44.90 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=36.2
Q ss_pred HHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013379 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (444)
Q Consensus 10 ~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (444)
-++.|++.+++ .-.+.+.+++.|.+++||++.||+..|...+
T Consensus 29 ye~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~ 70 (74)
T 1vej_A 29 YQQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLGASG 70 (74)
T ss_dssp SHHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 35689999999 3358899999999999999999999998644
No 211
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=96.02 E-value=0.021 Score=62.46 Aligned_cols=116 Identities=9% Similarity=0.026 Sum_probs=80.7
Q ss_pred HHhhcCCCccCcccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHH
Q 013379 153 LASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVC 232 (444)
Q Consensus 153 l~~~f~pp~~~~~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~ 232 (444)
|...+.|+. +..-+-++........+|+++|++..++|..|..+...+ +.+..-.+.++.+..++.+. ...++
T Consensus 650 fi~~~~~~~--v~~l~~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~---~~la~~~~~~~~~~~vd~~~--~~~~~ 722 (780)
T 3apo_A 650 WGLGFLPQA--SIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEF---ELLARMIKGKVRAGKVDCQA--YPQTC 722 (780)
T ss_dssp HHHTTSCCC--SEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTT--CHHHH
T ss_pred HHhhhcccc--cccCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCceEEEEECCC--CHHHH
Confidence 344444443 223333444344557789999999999999999885433 34555555678888777754 44688
Q ss_pred HHcCCCCCcEEEEEeCCCCeeeEEEeC----CCChHHHHHHHHhhhhcC
Q 013379 233 TYYKLDSIPVVLVVDPITGQKMRSWCG----MVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 233 ~~y~~~~~P~l~ii~p~tg~~v~~~~G----~~~~~~~l~~L~~~l~~~ 277 (444)
..|++..+|+++++. .|..+.++.| ..+.+++...|.+.+...
T Consensus 723 ~~~~v~~~Pt~~~~~--~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~~~ 769 (780)
T 3apo_A 723 QKAGIKAYPSVKLYQ--YERAKKSIWEEQINSRDAKTIAALIYGKLETL 769 (780)
T ss_dssp HHTTCCSSSEEEEEE--EETTTTEEEEEEECCCCHHHHHHHHHHHTTC-
T ss_pred HhcCCCcCCEEEEEc--CCCccccccCcccCCcCHHHHHHHHHHHHHHh
Confidence 999999999999993 5766666666 478999999998887643
No 212
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.99 E-value=0.0095 Score=46.57 Aligned_cols=41 Identities=17% Similarity=0.324 Sum_probs=37.5
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (444)
+++|.+++++ |-+.+.|++.|..++||+|.|++-.|++...
T Consensus 22 ~~~I~qL~~M--GF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 22 SRLIKQLTDM--GFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 5689999999 9999999999999999999999999987543
No 213
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=95.99 E-value=0.0087 Score=43.26 Aligned_cols=40 Identities=10% Similarity=0.080 Sum_probs=34.9
Q ss_pred HHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 10 ~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
-++.|++.+++ .-.+.+.+++.|.+++||++.||+..|+.
T Consensus 17 ~~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 17 YEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp THHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 35689999999 33588899999999999999999999975
No 214
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.98 E-value=0.039 Score=41.86 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=56.4
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
+...+|.||.++|+.+.-.+..++||.+|..-|... .+.+....+|+.. ++. | +.+.||.++|+.+ ++|.+.
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~-~~i~~~~qrL~~~--gk~--L--~d~~tL~~~~i~~g~~i~l~ 77 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEK-LNVPVRQQRLLFK--GKA--L--ADGKRLSDYSIGPNSKLNLV 77 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHH-TCCCTTTCEEEET--TEE--C--CTTSBGGGGTCCSSBCCEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCcCHHHEEEEEC--CeE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 457899999999998899999999999999999875 3556667777753 443 4 4478999999984 555543
No 215
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=95.95 E-value=0.038 Score=41.18 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=53.9
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
+|.||.++|+.+.-.+..++||.+|...|.... +.+.....|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~-~i~~~~q~L~~~--g~~--L--~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQRESTLHLV 70 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTCBTGGGTCCTTCEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHH-CcCHHHeEEEEC--CeE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 688999999999999999999999999998764 556667777753 443 4 347899999998 4556554
No 216
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.94 E-value=0.038 Score=42.71 Aligned_cols=72 Identities=22% Similarity=0.162 Sum_probs=56.9
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
+...+|.||..+|+.+.-.+..++||.+|..-|... .+.+....+|+.. .+. | +.+.||.++|+.+ ++|.+.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-~gi~~~~qrL~~~--Gk~--L--~d~~tL~~~~i~~g~~i~l~ 77 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQ-QGLPKKQQQLEFQ--GQV--L--QDWLGLGIYGIQDSDTLILS 77 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHH-TCCCTTTEEEEET--TEE--C--CSSSBHHHHTCCTTEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHH-hCCChHHEEEEEC--CEE--c--cCCCCHHHCCCCCCCEEEEE
Confidence 356899999999999999999999999999999886 4666777888753 443 4 4578999999984 555544
No 217
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=95.93 E-value=0.019 Score=50.75 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=61.9
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHH----hcCEEEEEeecC--------Chh-HHHHHHH-cC--------
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDD--------TSE-GKKVCTY-YK-------- 236 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l----~~~fV~w~~~~~--------s~e-g~~~~~~-y~-------- 236 (444)
.+|++||++..++|..|..... .+.++. ..++.+++++.+ +.+ ...++.. ++
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~p------~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~ 121 (181)
T 2p31_A 48 RGSVSLVVNVASECGFTDQHYR------ALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSK 121 (181)
T ss_dssp TTSEEEEEEECSSSTTHHHHHH------HHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCC
T ss_pred CCCEEEEEEeccCCCCcHHHHH------HHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEee
Confidence 5799999999999999986432 333333 245888888765 232 2344443 22
Q ss_pred ---------------CCCCc-------EEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 237 ---------------LDSIP-------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 237 ---------------~~~~P-------~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
+..+| ..+||++ .|.++.++.|..+++++...|.+.+
T Consensus 122 ~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll 180 (181)
T 2p31_A 122 IAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAP-DGKVVGAWDPTVSVEEVRPQITALV 180 (181)
T ss_dssp CCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECT-TSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred cccCCccchhhhhhhhhcCCCccccceeEEEEcC-CCCEEEEeCCCCCHHHHHHHHHHHh
Confidence 22467 8999996 7999999999889988888777654
No 218
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.92 E-value=0.0071 Score=44.53 Aligned_cols=44 Identities=18% Similarity=0.370 Sum_probs=38.5
Q ss_pred cchHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013379 7 ANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (444)
Q Consensus 7 ~~~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (444)
..-.++.|.+++++ |-+.+.|+..|.+++||++.|++-.|++.+
T Consensus 6 ~~~~~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~A~e~L~~~~~ 49 (63)
T 2dak_A 6 SGPPEDCVTTIVSM--GFSRDQALKALRATNNSLERAVDWIFSHID 49 (63)
T ss_dssp CCCCHHHHHHHHHH--TCCHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 33446689999999 999999999999999999999999998643
No 219
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=95.87 E-value=0.059 Score=47.33 Aligned_cols=90 Identities=16% Similarity=0.168 Sum_probs=63.7
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHH---h-cCEEEEEeecC--------C-hhHHHHHHH-cCCC------
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI---S-TNFIFWQVYDD--------T-SEGKKVCTY-YKLD------ 238 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l---~-~~fV~w~~~~~--------s-~eg~~~~~~-y~~~------ 238 (444)
.+|++||++..++|..|.... +.+.++. . .++.+++++.+ + .+...++.. |++.
T Consensus 37 ~Gk~vlv~F~atwC~~C~~~~------p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 110 (180)
T 3kij_A 37 KGKVSLVVNVASDCQLTDRNY------LGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHK 110 (180)
T ss_dssp TTSEEEEEEECSSSTTHHHHH------HHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCC
T ss_pred CCCEEEEEEEecCCCCcHHHH------HHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeee
Confidence 579999999999999988753 3333333 2 35888888754 3 233456655 4431
Q ss_pred --------------------CCcE----EEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 239 --------------------SIPV----VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 239 --------------------~~P~----l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
.+|. .+||++ .|.++.++.|..+++.+...|...++
T Consensus 111 ~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~lL~ 170 (180)
T 3kij_A 111 IKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNP-EGQVVKFWRPEEPIEVIRPDIAALVR 170 (180)
T ss_dssp CCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECT-TSCEEEEECTTCCGGGTHHHHHHHHH
T ss_pred eeccCccccHHHHHHHhcCCCCccccceEEEECC-CCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 1566 889996 79999999998888888777777665
No 220
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=95.83 E-value=0.047 Score=42.57 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=55.9
Q ss_pred ceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 366 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 366 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
..+|.||..+|+.+.-.+..++||.+|..-|... .+.+....+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~-~gip~~~qrL~~~--Gk~--L--~D~~tL~~~~I~~g~~i~l~ 74 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-EGVQDDLFWLTFE--GKP--L--EDQLPLGEYGLKPLSTVFMN 74 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHH-TCSCTTTEEEESS--SSC--C--CTTSBHHHHHCSTTCEEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHH-hCCChhHEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 5789999999999999999999999999999875 4666777788753 543 4 457999999998 4556554
No 221
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=95.83 E-value=0.057 Score=41.42 Aligned_cols=73 Identities=10% Similarity=0.177 Sum_probs=56.8
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhc--CCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL--EGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMIS 440 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~--~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~ 440 (444)
+...+|.||..+|+.+.-.+..++||.+|..-|.... .+.+....+|+.. ++. | +.+.||.++|+. +++|.
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~--Gk~--L--~D~~tL~~~~i~~g~~i~ 76 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA--GKI--L--SDDVPIRDYRIDEKNFVV 76 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET--TEE--C--CTTSBGGGGCCCTTSEEE
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC--CEE--C--cCCCCHHHcCCCCCCEEE
Confidence 3468899999999999999999999999999998862 4666677778753 443 4 447899999998 45565
Q ss_pred EE
Q 013379 441 VT 442 (444)
Q Consensus 441 v~ 442 (444)
+.
T Consensus 77 l~ 78 (85)
T 2wyq_A 77 VM 78 (85)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 222
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=95.82 E-value=0.057 Score=50.56 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=69.6
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeC--CCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCC---hhHHHHHHHcCCC
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQS--TKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDT---SEGKKVCTYYKLD 238 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~--~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s---~eg~~~~~~y~~~ 238 (444)
..+|++.+ ...+++||+++. +||.-...| +.+...+. .+++|..++++. .+...++..|+|.
T Consensus 12 ~~nF~~~i----~~~~~vlV~FyA~~pWCgl~P~~-------e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~ 80 (240)
T 2qc7_A 12 TVTFYKVI----PKSKFVLVKFDTQYPYGEKQDEF-------KRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLD 80 (240)
T ss_dssp TTHHHHHG----GGCSEEEEEECCSSCCSHHHHHH-------HHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCC
T ss_pred HHHHHHHH----cCCCCEEEEEeCCCCCCcchHHH-------HHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCC
Confidence 45677755 467899999999 998722222 23444443 468999888753 3457799999999
Q ss_pred --CCcEEEEEeCCCCe--eeEEEeCCCChHHHHHHHHhhh
Q 013379 239 --SIPVVLVVDPITGQ--KMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 239 --~~P~l~ii~p~tg~--~v~~~~G~~~~~~~l~~L~~~l 274 (444)
.||++.++. .|+ .+..+.|..+.+.|...|...+
T Consensus 81 ~~~~PTl~~f~--~G~~~~~~~y~G~~~~~~L~~fi~~~~ 118 (240)
T 2qc7_A 81 KESYPVFYLFR--DGDFENPVPYTGAVKVGAIQRWLKGQG 118 (240)
T ss_dssp GGGCSEEEEEE--TTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred CCCCCEEEEEe--CCCcCcceeecCCCCHHHHHHHHHHhc
Confidence 999999996 465 3557789889988888887664
No 223
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=95.77 E-value=0.042 Score=43.69 Aligned_cols=68 Identities=19% Similarity=0.267 Sum_probs=54.0
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
+|.||.++|+.+.-.+..++||.+|..-|... .+.+....+|+.. ++. | +.+.||.++|+. +++|.+.
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~-~gi~~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~i~l~ 70 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-EGIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 70 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHH-TCCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCcChhhEEEEEC--CEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 68899999999999999999999999999876 3666677778753 443 4 347999999998 4556543
No 224
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.77 E-value=0.05 Score=43.08 Aligned_cols=69 Identities=12% Similarity=0.173 Sum_probs=54.3
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhc--CCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL--EGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~--~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
+|.||.++|+.+.-.+..++||.+|..-|.... .+.+....+|+.. ++. | +.+.||.++|+.+ ++|.|.
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~--Gk~--L--~D~~tL~~ygI~~g~~i~l~ 73 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA--GKI--L--NDDTALKEYKIDEKNFVVVM 73 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET--TEE--C--CTTSBGGGGTCCSSSEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC--CEE--C--CCcCcHHHCCCCCCCEEEEE
Confidence 688999999999999999999999999998863 4566677778753 543 4 4468999999984 556543
No 225
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=95.75 E-value=0.059 Score=41.61 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=55.7
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
....+|.||..+|+.+.-.+..++||.+|-.-|.... +.+....+|+.. .+. | +.+.||.++|+.+ ++|.+
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~qrL~~~--G~~--L--~d~~tL~~~~i~~~~~i~l 81 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLIYS--GKQ--M--NDEKTAADYKILGGSVLHL 81 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCCEEET--TEE--C--CTTSBGGGGTCCTTCEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH-CcCHHHEEEEEC--CeE--C--CCCCcHHHcCCCCCCEEEE
Confidence 4578999999999999999999999999999998764 555666667653 332 4 4489999999984 55554
No 226
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=95.74 E-value=0.013 Score=47.85 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=36.3
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (444)
++.|++.+++ +-.+.+.+++.|.+++||++.||+..|+.+.
T Consensus 67 ~~qL~qL~eM-GF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 67 QPQLQQLRDM-GIQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp HHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 6689999999 4468899999999999999999999998643
No 227
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=95.73 E-value=0.047 Score=40.96 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=53.3
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 367 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 367 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
.+|.||. +|+.+.-.+..++||.+|..-|.... +.+....+|+. .++. | +.+.||.++|+. +++|.+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~-~i~~~~qrL~~--~gk~--L--~d~~tL~~~~i~~g~~i~l~ 73 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKAN-GIPVANQRLIY--SGKI--L--KDDQTVESYHIQDGHSVHLV 73 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEE--TTEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHh-CCCHHHEEEEE--CCeE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 6788888 89999999999999999999998764 56667777874 3543 4 346899999998 4556554
No 228
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=95.71 E-value=0.11 Score=47.63 Aligned_cols=34 Identities=18% Similarity=0.401 Sum_probs=28.6
Q ss_pred cEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 241 PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 241 P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
|..+|||+ .|.++.++.|..+++++...|...+.
T Consensus 178 pttfLID~-~G~vv~~~~g~~~~~~l~~~I~~ll~ 211 (215)
T 2i3y_A 178 FEKFLVGP-DGIPVMRWSHRATVSSVKTDILAYLK 211 (215)
T ss_dssp TCEEEECT-TSCEEEEECTTSCHHHHHHHHHHHGG
T ss_pred ceEEEECC-CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 57788996 79999999998899888888887765
No 229
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=95.70 E-value=0.043 Score=50.10 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=65.0
Q ss_pred cCCe-EEEEEeCCCchhhHHHHhhccCChhHHHHHh----cCEEEEEeecCC--------hh------------------
Q 013379 179 QDKW-LLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDT--------SE------------------ 227 (444)
Q Consensus 179 ~~K~-LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~----~~fV~w~~~~~s--------~e------------------ 227 (444)
.+|+ +||++..++|..|.... +.+.++.+ .++.++.++.+. .+
T Consensus 57 ~gk~~vll~F~a~~C~~C~~~~------~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D 130 (218)
T 3u5r_E 57 KDSPALLVAFISNRCPFVVLIR------EALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKD 130 (218)
T ss_dssp TTCSEEEEEECCSSCHHHHTTH------HHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEEC
T ss_pred CCCCeEEEEEECCCCccHHHHH------HHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEEC
Confidence 4675 99999999998887653 34444433 348888888742 11
Q ss_pred -HHHHHHHcCCCCCcEEEEEeCCCCeeeEEEe---------CCCChHHHHHHHHhhhhcCC
Q 013379 228 -GKKVCTYYKLDSIPVVLVVDPITGQKMRSWC---------GMVQPESLLEDLVPFMDGGP 278 (444)
Q Consensus 228 -g~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~---------G~~~~~~~l~~L~~~l~~~~ 278 (444)
...++..|++..+|+++|||+ .|+++.+.. |..+.+++...|...+....
T Consensus 131 ~~~~~~~~~~v~~~P~~~liD~-~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~ 190 (218)
T 3u5r_E 131 ASQSVAKAYGAACTPDFFLYDR-ERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKD 190 (218)
T ss_dssp TTCHHHHHHTCCEESEEEEECT-TCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCC
T ss_pred CccHHHHHcCCCCCCeEEEECC-CCcEEEeccccccccccccccCHHHHHHHHHHHHcCCC
Confidence 245778899999999999996 688775421 23457888888888876543
No 230
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=95.68 E-value=0.052 Score=46.59 Aligned_cols=86 Identities=13% Similarity=0.301 Sum_probs=54.4
Q ss_pred cCCeEEEEEeC-CCchhhHHHHhhccCChhHHHHH----hcCEEEEEeecCChhHH-------------------HHHHH
Q 013379 179 QDKWLLVNLQS-TKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSEGK-------------------KVCTY 234 (444)
Q Consensus 179 ~~K~LlVyl~~-~~~~~~~~f~rdv~~~~~V~~~l----~~~fV~w~~~~~s~eg~-------------------~~~~~ 234 (444)
.+|+++|++.. .+|..|..-. +.+.++. ..++.++++..++.+.. .++..
T Consensus 34 ~gk~~vl~F~~~~~c~~C~~~~------~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 107 (163)
T 3gkn_A 34 AGHWLVIYFYPKDSTPGATTEG------LDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRA 107 (163)
T ss_dssp TTSCEEEEECSCTTSHHHHHHH------HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHH
T ss_pred CCCcEEEEEeCCCCCCcHHHHH------HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHH
Confidence 36788888886 7787776543 2333333 24577777777765542 34556
Q ss_pred cCCCC------------CcEEEEEeCCCCeeeEEEeCCCC---hHHHHHHHH
Q 013379 235 YKLDS------------IPVVLVVDPITGQKMRSWCGMVQ---PESLLEDLV 271 (444)
Q Consensus 235 y~~~~------------~P~l~ii~p~tg~~v~~~~G~~~---~~~~l~~L~ 271 (444)
|++.. .|+++|||+ .|.++..+.|... .++++..|.
T Consensus 108 ~~v~~~~~~~~~~~~~~~p~~~lid~-~G~i~~~~~~~~~~~~~~~il~~l~ 158 (163)
T 3gkn_A 108 FDVIKEKNMYGKQVLGIERSTFLLSP-EGQVVQAWRKVKVAGHADAVLAALK 158 (163)
T ss_dssp TTCEEEEEETTEEEEEECCEEEEECT-TSCEEEEECSCCSTTHHHHHHHHHH
T ss_pred hCCccccccccccccCcceEEEEECC-CCeEEEEEcCCCcccCHHHHHHHHH
Confidence 76654 899999997 6998888855322 344444443
No 231
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=95.68 E-value=0.019 Score=59.35 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=71.0
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh---cCEEEEEeecCChhHHHHHHHcCCCCCcEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~---~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l 243 (444)
.+|++.+ ...+|++||+++.++|..|+.+...+ ..+.+.+. .++++..++.+..+ ... |++..||++
T Consensus 366 ~~f~~~v---~~~~k~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~---~~~-~~v~~~Pt~ 435 (504)
T 2b5e_A 366 KNHDEIV---NDPKKDVLVLYYAPWCGHCKRLAPTY---QELADTYANATSDVLIAKLDHTEND---VRG-VVIEGYPTI 435 (504)
T ss_dssp TTHHHHH---HCTTCCEEEEEECTTCHHHHHHHHHH---HHHHHHHHHHCSSCEEEEEEGGGCC---CSS-CCCSSSSEE
T ss_pred ccHHHhh---ccCCCCEEEEEECCCChhHHHHhHHH---HHHHHHhhccCCcEEEEEecCCccc---ccc-CCceecCeE
Confidence 4566654 45789999999999999999986433 23333333 37899988876543 233 999999999
Q ss_pred EEEeCCCCee--eEEEeCCCChHHHHHHHHhhhh
Q 013379 244 LVVDPITGQK--MRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 244 ~ii~p~tg~~--v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
+++. .|.. +....|..+.+.|+..|.+.+.
T Consensus 436 ~~~~--~G~~~~~~~~~G~~~~~~l~~~i~~~~~ 467 (504)
T 2b5e_A 436 VLYP--GGKKSESVVYQGSRSLDSLFDFIKENGH 467 (504)
T ss_dssp EEEC--CTTSCCCCBCCSCCCHHHHHHHHHHHCT
T ss_pred EEEe--CCceecceEecCCCCHHHHHHHHHhcCC
Confidence 9993 5754 5667898899988888877644
No 232
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=95.65 E-value=0.083 Score=39.97 Aligned_cols=70 Identities=21% Similarity=0.226 Sum_probs=55.4
Q ss_pred ceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 366 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 366 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
...|.||.++|+.+.-.+..++||.+|-.-|.... +.+....+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~qrL~~~--G~~--L--~d~~tL~~~~i~~~~~l~l~ 74 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLE-GVQDDLFWLTFE--GKP--L--EDQLPLGEYGLKPLSTVFMN 74 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEEE
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhc-CCCHHHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence 47899999999999889999999999999998753 666667778753 443 4 447899999998 4666554
No 233
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=95.64 E-value=0.072 Score=48.41 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=28.5
Q ss_pred CcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 240 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 240 ~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
.|..+||++ .|+++.++.|..+++++...|...+
T Consensus 173 ~p~tflID~-~G~i~~~~~g~~~~~~l~~~I~~ll 206 (208)
T 2f8a_A 173 NFEKFLVGP-DGVPLRRYSRRFQTIDIEPDIEALL 206 (208)
T ss_dssp TTCEEEECT-TSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred CceEEEEcC-CCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 388999996 7999999999888888888777665
No 234
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=95.59 E-value=0.11 Score=48.88 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=70.7
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEe--CCCchhhHHHHhhccCChhHHHHHh---cCEEEEEeecCC---hhHHHHHHHcC
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQ--STKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDT---SEGKKVCTYYK 236 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~--~~~~~~~~~f~rdv~~~~~V~~~l~---~~fV~w~~~~~s---~eg~~~~~~y~ 236 (444)
-..+|++++ ...+++||.++ .+||.-...| +.+..-+. .+++|..++++. .+...++..|+
T Consensus 22 t~~nF~~vi----~~~~~vlV~Fy~~ApWCgl~P~~-------e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~ 90 (248)
T 2c0g_A 22 DELSFEKTV----ERFPYSVVKFDIASPYGEKHEAF-------TAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYK 90 (248)
T ss_dssp CTTTHHHHH----TTSSEEEEEEEESSCCSHHHHHH-------HHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTT
T ss_pred CHHHHHHHH----hcCCCEEEEEECCCCCCccHHHH-------HHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhC
Confidence 346788754 56789999999 9998622222 23444342 478999888765 23577999999
Q ss_pred CC--CCcEEEEEeCCCCe--eeEEE--eCCCChHHHHHHHHhhhhc
Q 013379 237 LD--SIPVVLVVDPITGQ--KMRSW--CGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 237 ~~--~~P~l~ii~p~tg~--~v~~~--~G~~~~~~~l~~L~~~l~~ 276 (444)
|. .||++.++. |. ..... .|..+.+.|...|...+..
T Consensus 91 V~~~~~PTl~~F~---G~~~~~~~y~~~G~~~~~~L~~fi~~~~~~ 133 (248)
T 2c0g_A 91 VDDKNFPSIFLFK---GNADEYVQLPSHVDVTLDNLKAFVSANTPL 133 (248)
T ss_dssp CCTTSCCEEEEES---SSSSSEEECCTTSCCCHHHHHHHHHHHSSC
T ss_pred CCcCCCCeEEEEe---CCcCcceeecccCCCCHHHHHHHHHHhhcc
Confidence 99 999999885 55 24556 7888999988888877653
No 235
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.043 Score=43.76 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=55.6
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
+...+|.||..+|+.+.-.+..++||.+|-.-|.... +.+....+|+.. .+. | +.+.||.++|+.+ ++|.+.
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~~i~~g~~i~l~ 92 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 92 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGCEEEET--TEE--C--CTTCBSGGGTCCTTEEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHh-CCChhHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence 4578999999999999999999999999999998864 556666778753 443 4 4578999999985 555443
No 236
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=95.51 E-value=0.039 Score=50.64 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=60.3
Q ss_pred cCCeEEEEEeC-CCchhhHHHHhhccCChhHHHHH----hcCEEEEEeecCChhH-------------------------
Q 013379 179 QDKWLLVNLQS-TKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSEG------------------------- 228 (444)
Q Consensus 179 ~~K~LlVyl~~-~~~~~~~~f~rdv~~~~~V~~~l----~~~fV~w~~~~~s~eg------------------------- 228 (444)
.+|++||++.. .+|..|.... +.+.++. ..++.++.++.++.+.
T Consensus 68 ~Gk~vll~F~a~~wC~~C~~~~------p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 141 (222)
T 3ztl_A 68 RGKYVVLFFYPADFTFVCPTEI------IAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADR 141 (222)
T ss_dssp TTSEEEEEECSCSSCSHHHHHH------HHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECS
T ss_pred CCCeEEEEEECCCCCCchHHHH------HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCC
Confidence 57999999994 8999887753 3333333 2468888888887542
Q ss_pred -HHHHHHcCCC------CCcEEEEEeCCCCeeeEEEeCCCC----hHHHHHHHH
Q 013379 229 -KKVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMVQ----PESLLEDLV 271 (444)
Q Consensus 229 -~~~~~~y~~~------~~P~l~ii~p~tg~~v~~~~G~~~----~~~~l~~L~ 271 (444)
..++..|++. .+|.++|||+ .|.++..+.|..+ .++++..|.
T Consensus 142 ~~~~~~~ygv~~~~~g~~~P~~~lID~-~G~I~~~~~g~~~~~~~~~~il~~l~ 194 (222)
T 3ztl_A 142 KQEISKAYGVFDEEDGNAFRGLFIIDP-NGILRQITINDKPVGRSVDETLRLLD 194 (222)
T ss_dssp SSHHHHHTTCBCTTTSSBCEEEEEECT-TSEEEEEEEECTTBCCCHHHHHHHHH
T ss_pred chHHHHHcCCeecCCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 1355678886 7999999997 7999888877543 455555554
No 237
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=95.49 E-value=0.058 Score=42.93 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=56.4
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
+...+|.||..+|+.+.-....++||..|..-+.... +.+....+|+.. .+. | +.+.||+++|+.. ++|.+
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~-gip~~~qrLif~--Gk~--L--~d~~tl~dy~i~~g~~I~l 90 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQ-GVPMNSLRFLFE--GQR--I--ADNHTPKELGMEEEDVIEV 90 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCHHHHTCCTTCEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CCChhhEEEEEC--CeE--c--CCCCCHHHCCCCCCCEEEE
Confidence 4578999999999999999999999999999988763 566667777764 543 4 4578999999984 55544
No 238
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=95.48 E-value=0.052 Score=47.97 Aligned_cols=88 Identities=11% Similarity=0.104 Sum_probs=57.7
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHH----hcCEEEEEeecCC--------h-hHHHHHHHcCC--------
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDT--------S-EGKKVCTYYKL-------- 237 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l----~~~fV~w~~~~~s--------~-eg~~~~~~y~~-------- 237 (444)
.+||+||++..++|..|.... +.+.++. ..++.+++++.+. . +...++..+++
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~------~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 121 (185)
T 2gs3_A 48 RGFVCIVTNVASQGGKTEVNY------TQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKI 121 (185)
T ss_dssp TTSEEEEEEECSSSTTHHHHH------HHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCC
T ss_pred CCCEEEEEEecCCCCchHHHH------HHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeee
Confidence 578999999999998886542 2333332 2357777776542 2 22344443322
Q ss_pred ----------------------------CCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhh
Q 013379 238 ----------------------------DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF 273 (444)
Q Consensus 238 ----------------------------~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~ 273 (444)
..+|..+||++ .|+++.++.|..+++++...|.+.
T Consensus 122 d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~l 184 (185)
T 2gs3_A 122 CVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK-NGCVVKRYGPMEEPLVIEKDLPHY 184 (185)
T ss_dssp BSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECT-TSCEEEEECTTSCGGGGGGGHHHH
T ss_pred ccCChhhhHHHHHHHhhcccccccCCcccccceEEEECC-CCCEEEeeCCCCCHHHHHHHHHHh
Confidence 12489999996 799999999988887776666543
No 239
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.46 E-value=0.019 Score=42.30 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=36.9
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCC-CHHHHHHHHhcCCCC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSW-KLDEAIQLFYVGNES 53 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w-~le~Av~~~~~~~~~ 53 (444)
++.|.+.+++ |-+.+.|+..|.+++| |+|.|++-.|++.+.
T Consensus 20 e~~i~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 20 GSALDVLLSM--GFPRARAQKALASTGGRSVQTACDWLFSHSGP 61 (64)
T ss_dssp CCHHHHHHHH--TCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Confidence 3478999999 9999999999999999 999999999987553
No 240
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.46 E-value=0.077 Score=42.18 Aligned_cols=78 Identities=12% Similarity=0.204 Sum_probs=59.6
Q ss_pred CCceEEEEECC---CCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcC---CCCCcccCCCCcCCChhhcCCC-C
Q 013379 364 SLLCRVGVRLP---DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA---IPGATKSLDYDSKLTFEDSGLA-N 436 (444)
Q Consensus 364 ~~~~~i~iRlP---~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~---fPrr~~~l~~~~~~Tl~e~gL~-~ 436 (444)
.+.++|.|+.| +|..+.++|..+.||..|-.-|.... +.+....+|.-. .|.....+ .+...||...|+. +
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~-gip~~~q~L~~~~~~~~~~~~~L-~~d~~~L~~y~i~~G 84 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLL-KVPVSELLLSYESSKMPGREIEL-ENDLQPLQFYSVENG 84 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTT-TCCTTTCEEEEECTTSCSCEEEC-CCSSSBSGGGTCCTT
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHH-CCChhHeEEEEEcCCCCceeecc-CCCcccHhhcCCCCC
Confidence 46789999986 68899999999999999999998854 556666666543 45443223 4778999999998 5
Q ss_pred ceEEEEe
Q 013379 437 AMISVTW 443 (444)
Q Consensus 437 ~~v~v~~ 443 (444)
..|.|.+
T Consensus 85 ~~I~V~d 91 (97)
T 1wjn_A 85 DCLLVRW 91 (97)
T ss_dssp CEEEEEC
T ss_pred CEEEEEe
Confidence 6787775
No 241
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=95.44 E-value=0.086 Score=45.50 Aligned_cols=40 Identities=13% Similarity=0.295 Sum_probs=31.9
Q ss_pred cCCCCCcEEEEEeCCCCeeeEEEeCCC--ChHHHHHHHHhhhh
Q 013379 235 YKLDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPFMD 275 (444)
Q Consensus 235 y~~~~~P~l~ii~p~tg~~v~~~~G~~--~~~~~l~~L~~~l~ 275 (444)
|.+...|+++||++ .|.++.++.|.. ++++++..|...+.
T Consensus 131 ~~~~~~p~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~ll~ 172 (174)
T 1xzo_A 131 DQVIHQSSFYLVGP-DGKVLKDYNGVENTPYDDIISDVKSAST 172 (174)
T ss_dssp CSCCSCCEEEEECT-TSEEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred CeeeeeeEEEEECC-CCeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 34567899999997 799999999975 57888888887654
No 242
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=95.39 E-value=0.12 Score=48.24 Aligned_cols=88 Identities=10% Similarity=0.079 Sum_probs=64.2
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh----cCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeee
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM 254 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~----~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v 254 (444)
.++..+|++..++|..|..+... | ..+..... .++.+..++.+. ...++..|++.++|++.| +|+++
T Consensus 137 ~~~~~vv~F~a~wC~~C~~~~p~-l--~~la~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~V~~vPt~~i----~G~~~ 207 (243)
T 2hls_A 137 KGRVHIETIITPSCPYCPYAVLL-A--HMFAYEAWKQGNPVILSEAVEAYE--NPDIADKYGVMSVPSIAI----NGYLV 207 (243)
T ss_dssp CSCEEEEEEECSSCSSHHHHHHH-H--HHHHHHHHHTTCCCEEEEEEETTT--CHHHHHHTTCCSSSEEEE----TTEEE
T ss_pred CCCcEEEEEECCCCCCcHHHHHH-H--HHHHHHcccccCCcEEEEEEECcc--CHHHHHHcCCeeeCeEEE----CCEEE
Confidence 46777899999999999987432 1 11222221 467777766654 346788999999999988 57754
Q ss_pred EEEeCCCChHHHHHHHHhhhhcC
Q 013379 255 RSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 255 ~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
..|..+.++|+..|.+.+..+
T Consensus 208 --~~G~~~~~~l~~~l~~~~~~~ 228 (243)
T 2hls_A 208 --FVGVPYEEDFLDYVKSAAEGR 228 (243)
T ss_dssp --EESCCCHHHHHHHHHHHHTTC
T ss_pred --EeCCCCHHHHHHHHHHHhhcc
Confidence 789999999999998887654
No 243
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=95.36 E-value=0.039 Score=56.75 Aligned_cols=101 Identities=8% Similarity=0.050 Sum_probs=65.9
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--------cCEEEEEeecCChhHHHHHHHcCCC
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--------TNFIFWQVYDDTSEGKKVCTYYKLD 238 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--------~~fV~w~~~~~s~eg~~~~~~y~~~ 238 (444)
.+|++++. ...+|++||+++.++|..|..+...+ +.+.+.+. .++.|..++.+. ...++..|+|.
T Consensus 31 ~~F~~~l~--~~~~k~VlV~FyA~WC~pCk~~~P~l---~~la~~~~~~~g~~~~~~v~f~~VD~d~--~~~la~~y~V~ 103 (470)
T 3qcp_A 31 DDFSRVHR--VAPLCPWIVLFYNDGCGACRRYASTF---SKFAGGLKVEHGKDALQIATAAAVNCAS--EVDLCRKYDIN 103 (470)
T ss_dssp SCGGGTCT--TGGGSCEEEEEECTTCHHHHHHHHHH---HHHHHTSCCSSCSSGGGGCEEEEEETTT--CHHHHHHTTCC
T ss_pred HHHHHHHH--hCCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHHhhhcccccCceEEEEEEECCC--CHHHHHHcCCC
Confidence 34444432 24568999999999999999986432 23333333 148888888764 36789999999
Q ss_pred CCcEEEEEeCCCCeee------------EEEeCCCChHHHHHHHHhhh
Q 013379 239 SIPVVLVVDPITGQKM------------RSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 239 ~~P~l~ii~p~tg~~v------------~~~~G~~~~~~~l~~L~~~l 274 (444)
.||++.|+.+..+..+ .-+...++.+++...+...+
T Consensus 104 ~~PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~eLe~~~e~Li 151 (470)
T 3qcp_A 104 FVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLV 151 (470)
T ss_dssp SSCEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHHHHHHHHHHHH
T ss_pred ccCeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 9999999976433222 22233466676666555444
No 244
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.36 E-value=0.094 Score=42.19 Aligned_cols=74 Identities=12% Similarity=0.136 Sum_probs=59.7
Q ss_pred CCCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 363 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 363 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
......|-|+.+.|+.+.-....++||.+|..-|... .+.+...-+|+.. ++. | +.+.||.+.|+.. ++|-+
T Consensus 25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k-~Gip~~qQrLi~~--Gk~--L--~D~~TL~dygI~~gstlhL 97 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ-TGTRWNKIVLKKW--YTI--F--KDHVSLGDYEIHDGMNLEL 97 (100)
T ss_dssp CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHH-HCCCGGGCEEEET--TEE--C--CSSCBHHHHTCCTTEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHH-hCCCHHHEEEEEC--CEE--C--CCCCCHHHcCCCCCCEEEE
Confidence 3457899999999999999999999999999999886 4667777778754 654 5 4589999999984 66666
Q ss_pred Ee
Q 013379 442 TW 443 (444)
Q Consensus 442 ~~ 443 (444)
.|
T Consensus 98 ~~ 99 (100)
T 1uh6_A 98 YY 99 (100)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 245
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=95.35 E-value=0.086 Score=40.80 Aligned_cols=72 Identities=11% Similarity=0.037 Sum_probs=56.6
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCceEEEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVT 442 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v~v~ 442 (444)
+...+|.||..+|+.+.-.+..++||.+|-..|.... +.+...-+|+.. ++. | +.+.||.++|+.+++|.+.
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~~i~g~~i~lv 86 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASV-SIPSEKQRLIYQ--GRV--L--QDDKKLQEYNVGGKVIHLV 86 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTSBGGGGTCTTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHh-CCCHHHEEEEEC--CEE--C--CCCCcHHHcCCCCcEEEEE
Confidence 3568999999999999899999999999999998764 556666777753 342 4 4488999999965666554
No 246
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=95.32 E-value=0.077 Score=40.00 Aligned_cols=70 Identities=21% Similarity=0.186 Sum_probs=54.1
Q ss_pred ceEEEEECCCCceE-EEE-eCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 366 LCRVGVRLPDGRRM-QRN-FLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 366 ~~~i~iRlP~G~r~-~rr-F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
..+|.||..+|+.+ .-. +..++||.+|-.-|.... +.+....+|+.. ++. | +.+.||.++|+. +++|.+.
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~-gip~~~qrL~~~--g~~--L--~d~~tL~~~~i~~g~~i~l~ 74 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELF-HVEPGLQRLFYR--GKQ--M--EDGHTLFDYEVRLNDTIQLL 74 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTCBTTTTTCCTTCEEEEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 46899999999885 677 999999999999998763 666667777753 443 4 457899999998 5666554
No 247
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=95.25 E-value=0.078 Score=41.75 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=54.4
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 367 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 367 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
.+|.||..+|+.+.-.+..++||.+|-.-|.... +.+....+|+. -.+. | +.+.||.++|+. +++|.+.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~-gip~~~qrL~~--~G~~--L--~d~~tL~~~~i~~~~~i~l~ 71 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHLV 71 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEE--TTEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhh-CCChhHEEEEE--CCEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 4789999999999999999999999999998864 66666777875 3443 4 457899999998 4556543
No 248
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=95.23 E-value=0.082 Score=49.74 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=62.8
Q ss_pred cCCeEEE-EEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhH-------------------------HHHH
Q 013379 179 QDKWLLV-NLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KKVC 232 (444)
Q Consensus 179 ~~K~LlV-yl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg-------------------------~~~~ 232 (444)
.+||++| ++-.++|+.|......+ +....+|-+.++.+++++.++.+. ..++
T Consensus 32 ~GK~vVL~~fpa~~CpvC~tEl~~l--~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia 109 (249)
T 3a2v_A 32 QGKWFVLFSHPADFTPVCTTEFVSF--ARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVA 109 (249)
T ss_dssp TTCEEEEECCSCTTCHHHHHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHH
T ss_pred CCCEEEEEEEcCCCCcChHHHHHHH--HHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHH
Confidence 5788654 66678898887653211 111222334578888888887542 2467
Q ss_pred HHcCCC-------CCcEEEEEeCCCCeeeEEEeCCC----ChHHHHHHHHhhh
Q 013379 233 TYYKLD-------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 274 (444)
Q Consensus 233 ~~y~~~-------~~P~l~ii~p~tg~~v~~~~G~~----~~~~~l~~L~~~l 274 (444)
..|++. .+|.++|||| .|.++..+.|.. +.++++..|....
T Consensus 110 ~~ygv~~~~~g~~~~p~~fIID~-dG~I~~~~~~~~~~gr~~~Ellr~I~alq 161 (249)
T 3a2v_A 110 RRLGLLHAESATHTVRGVFIVDA-RGVIRTMLYYPMELGRLVDEILRIVKALK 161 (249)
T ss_dssp HHHTCCCTTCSSSCCEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HHhCCccccCCCcccceEEEECC-CCeEEEEEecCCcccchhHHHHHHHHHHH
Confidence 778876 8999999998 688887776653 5788877776553
No 249
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=95.21 E-value=0.066 Score=40.95 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=55.1
Q ss_pred ceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 366 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 366 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
..+|.||.++|+.+.-.+..++||.+|-.-|.... +.+....+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~ip~~~qrL~~~--g~~--L--~d~~tL~~~~i~~~~~i~l~ 73 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIHNHSALYLL 73 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--BEE--C--CTTCBTTTTTCCTTCEEEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CCCHHHEEEEEC--CeE--C--CCCCCHHHCCCCCCCEEEEE
Confidence 46899999999999999999999999999998864 666677888764 332 4 457899999998 4566554
No 250
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=95.20 E-value=0.18 Score=45.84 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=28.3
Q ss_pred cEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 241 PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 241 P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
|+.+|||+ .|.++.++.|..+++++...|...+.
T Consensus 160 ~ttflID~-~G~i~~~~~g~~~~~~l~~~I~~ll~ 193 (207)
T 2r37_A 160 FEKFLVGP-DGIPIMRWHHRTTVSNVKMDILSYMR 193 (207)
T ss_dssp TCEEEECT-TSCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 57888996 79999999998889888888877765
No 251
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.15 E-value=0.022 Score=44.28 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=37.3
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (444)
++.|.+.+++ |-+.+.|++.|.+++||+|.|++-.|++.+.
T Consensus 30 e~~i~~L~~M--GF~~~~a~~AL~~t~~nve~A~ewL~~~~~d 70 (83)
T 2dai_A 30 EAALRQLTEM--GFPENRATKALQLNHMSVPQAMEWLIEHAED 70 (83)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 4589999999 9999999999999999999999999987543
No 252
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=95.15 E-value=0.19 Score=45.72 Aligned_cols=102 Identities=8% Similarity=0.027 Sum_probs=64.6
Q ss_pred CcHHHHHHHHH--HcCCeEEEEEe-----CCCchhhHHHHhhccCChhH-HHHH-hcCEEEEEeecCChhHHHHHHHcCC
Q 013379 167 GSFEKAKDAAS--VQDKWLLVNLQ-----STKEFSSHMLNRDTWANEAV-SQTI-STNFIFWQVYDDTSEGKKVCTYYKL 237 (444)
Q Consensus 167 gs~~~A~~~A~--~~~K~LlVyl~-----~~~~~~~~~f~rdv~~~~~V-~~~l-~~~fV~w~~~~~s~eg~~~~~~y~~ 237 (444)
+.-.+.+.... +..++++|.+. .++|..|..|... | ..+ .++. ..++.+..++.+ +...++..|++
T Consensus 5 ~~~~~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~-~--~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~v 79 (229)
T 2ywm_A 5 LDVRMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKE-T--VEVIGEAVGQDKIKLDIYSPF--THKEETEKYGV 79 (229)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHH-H--HHHHHHHHCTTTEEEEEECTT--TCHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHH-H--HHHHhccCCCCceEEEEecCc--ccHHHHHHcCC
Confidence 33334444433 55677777666 3446666666432 1 122 1222 456777765554 46789999999
Q ss_pred CCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 238 DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 238 ~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
..||++.++. .|....+..|..+.+++...+...+.
T Consensus 80 ~~~Ptl~~~~--~~~~~~~~~G~~~~~~l~~~~~~~~~ 115 (229)
T 2ywm_A 80 DRVPTIVIEG--DKDYGIRYIGLPAGLEFTTLINGIFH 115 (229)
T ss_dssp CBSSEEEEES--SSCCCEEEESCCCTTHHHHHHHHHHH
T ss_pred CcCcEEEEEC--CCcccceecCCccHHHHHHHHHHHHh
Confidence 9999999995 35666778898887777776666553
No 253
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.13 E-value=0.022 Score=42.05 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=36.7
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHc-CCCHHHHHHHHhcCCCC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQAT-SWKLDEAIQLFYVGNES 53 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~-~w~le~Av~~~~~~~~~ 53 (444)
++.|.+++++ |-+.+.|++.|.++ |||+|.|++-.|++.+.
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 10 LTALESLIEM--GFPRGRAEKALALTGNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp CCHHHHHHTT--TCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence 3488999999 99999999999999 79999999999997554
No 254
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=95.10 E-value=0.12 Score=45.95 Aligned_cols=104 Identities=14% Similarity=0.197 Sum_probs=69.8
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeC-------CCchhhHHHHhhccCChhHHHHHh-----cCEEEEEeecCChhHHHHH
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQS-------TKEFSSHMLNRDTWANEAVSQTIS-----TNFIFWQVYDDTSEGKKVC 232 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~-------~~~~~~~~f~rdv~~~~~V~~~l~-----~~fV~w~~~~~s~eg~~~~ 232 (444)
-..+|++.+. .....++||.+.. .+|-.|..|...+ +.|.+-.. .+.+|..+|++ +...++
T Consensus 24 t~~nF~~~v~--~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~---e~lA~~~~~~~~~~~v~f~kvD~d--~~~~la 96 (178)
T 3ga4_A 24 TADNYPLLSR--GVPGYFNILYITMRGTNSNGMSCQLCHDFEKTY---HAVADVIRSQAPQSLNLFFTVDVN--EVPQLV 96 (178)
T ss_dssp CTTTHHHHTT--CCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHH---HHHHHHHHHHCTTCCEEEEEEETT--TCHHHH
T ss_pred CHHHHHHHHc--ccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHH---HHHHHHhhhccCCCCEEEEEEECc--cCHHHH
Confidence 4568887543 2356799999998 4899999984211 22222223 56777776665 578899
Q ss_pred HHcCCCCCcEEEEEeCCCCee----------eEEE---eC-CCChHHHHHHHHhhhh
Q 013379 233 TYYKLDSIPVVLVVDPITGQK----------MRSW---CG-MVQPESLLEDLVPFMD 275 (444)
Q Consensus 233 ~~y~~~~~P~l~ii~p~tg~~----------v~~~---~G-~~~~~~~l~~L~~~l~ 275 (444)
..|+|.++|+|+++.+-.+.. -... .| ..+++.|...|.+-+.
T Consensus 97 ~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~ 153 (178)
T 3ga4_A 97 KDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILN 153 (178)
T ss_dssp HHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHT
T ss_pred HHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcC
Confidence 999999999999998743322 1122 24 5678887777766555
No 255
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=95.09 E-value=0.073 Score=46.82 Aligned_cols=73 Identities=12% Similarity=0.069 Sum_probs=53.9
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhHHHHHHHcC---CCCCcEEEEEeCCCCe
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYK---LDSIPVVLVVDPITGQ 252 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg~~~~~~y~---~~~~P~l~ii~p~tg~ 252 (444)
-.+|+++|++..++|.+|..+. |.+.++.. .++.+..++.+ +...++..|. +..+|+++|++. .|+
T Consensus 52 ~~~k~vvv~F~A~WC~pC~~~~------P~l~~l~~~~~~v~~~~v~~d--~~~~~~~~~~~~~v~~iPt~i~~~~-~G~ 122 (167)
T 1z6n_A 52 IERRYRLLVAGEMWCPDCQINL------AALDFAQRLQPNIELAIISKG--RAEDDLRQRLALERIAIPLVLVLDE-EFN 122 (167)
T ss_dssp CCSCEEEEEECCTTCHHHHHHH------HHHHHHHHHCTTEEEEEECHH--HHHHHTTTTTTCSSCCSSEEEEECT-TCC
T ss_pred hCCCEEEEEEECCCChhHHHHH------HHHHHHHHHCCCcEEEEEECC--CCHHHHHHHHHcCCCCcCeEEEECC-CCC
Confidence 3579999999999999999874 44444443 35666655554 4556777776 899999999985 578
Q ss_pred eeEEEeC
Q 013379 253 KMRSWCG 259 (444)
Q Consensus 253 ~v~~~~G 259 (444)
++.++-|
T Consensus 123 ~~~~~g~ 129 (167)
T 1z6n_A 123 LLGRFVE 129 (167)
T ss_dssp EEEEEES
T ss_pred EEEEEcC
Confidence 8877743
No 256
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=94.09 E-value=0.0038 Score=53.67 Aligned_cols=95 Identities=9% Similarity=0.026 Sum_probs=56.0
Q ss_pred HHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHH-hcCEEEEEeecCChh--HHHH------------------
Q 013379 173 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDDTSE--GKKV------------------ 231 (444)
Q Consensus 173 ~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l-~~~fV~w~~~~~s~e--g~~~------------------ 231 (444)
+..+.-.+|++||++..++|..|..+...+ ...-...+- ..++.++.++.+... ...+
T Consensus 26 ~~l~~~~gk~vll~f~a~~C~~C~~~~~~l-~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~ 104 (159)
T 2ls5_A 26 VTLSSLRGKVVMLQFTASWCGVCRKEMPFI-EKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADI 104 (159)
Confidence 333444679999999999999887754322 211111222 346666666655431 2223
Q ss_pred HHHcC--CCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHH
Q 013379 232 CTYYK--LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 270 (444)
Q Consensus 232 ~~~y~--~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L 270 (444)
+..|+ +..+|+++||++ .|+++.+..|. ++.++...|
T Consensus 105 ~~~~~~~~~~~P~~~lid~-~G~i~~~~~g~-~~~~l~~~l 143 (159)
T 2ls5_A 105 FAKYALRDAGITRNVLIDR-EGKIVKLTRLY-NEEEFASLV 143 (159)
Confidence 33444 345999999996 68888877773 444444333
No 257
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=95.02 E-value=0.031 Score=38.92 Aligned_cols=39 Identities=10% Similarity=0.154 Sum_probs=34.4
Q ss_pred hHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013379 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (444)
Q Consensus 9 ~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (444)
+-++.|++.|++ |-|.+.|++.|..++||++.|.+...+
T Consensus 10 ~~~~~Ia~Lm~m--GFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 10 NVDAKIAKLMGE--GYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp -CHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345799999999 999999999999999999999987654
No 258
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=95.01 E-value=0.14 Score=44.09 Aligned_cols=89 Identities=9% Similarity=0.064 Sum_probs=60.6
Q ss_pred cCCeEEEEEeCCC-chhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChh---------------------HHHHHHH
Q 013379 179 QDKWLLVNLQSTK-EFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE---------------------GKKVCTY 234 (444)
Q Consensus 179 ~~K~LlVyl~~~~-~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~e---------------------g~~~~~~ 234 (444)
.+||++|++...+ |..|.... +.+.++.+ .++.++.++.++.+ ...++..
T Consensus 43 ~gk~~vl~F~~~~~C~~C~~~~------~~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 116 (167)
T 2jsy_A 43 KGKVTIISVIPSIDTGVCDAQT------RRFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEA 116 (167)
T ss_dssp TTSCEEEEECSCSTTSHHHHTH------HHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHH
T ss_pred CCCeEEEEEecCCCCCchHHHH------HHHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHH
Confidence 4789999999887 88887543 23333322 56666666666532 2356778
Q ss_pred cCCCC------CcEEEEEeCCCCeeeEEEeCC-----CChHHHHHHHHhhh
Q 013379 235 YKLDS------IPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLVPFM 274 (444)
Q Consensus 235 y~~~~------~P~l~ii~p~tg~~v~~~~G~-----~~~~~~l~~L~~~l 274 (444)
|++.. +|+++|||+ .|.++.++.|. .+.+++++.|.+.+
T Consensus 117 ~~v~~~~~g~~~p~~~lid~-~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll 166 (167)
T 2jsy_A 117 FGVYIKELRLLARSVFVLDE-NGKVVYAEYVSEATNHPNYEKPIEAAKALV 166 (167)
T ss_dssp TTCBBTTTCSBCCEEEEECT-TSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred hCCccccCCceeeEEEEEcC-CCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence 88754 499999997 69998888763 24578888777654
No 259
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.00 E-value=0.049 Score=40.38 Aligned_cols=42 Identities=14% Similarity=-0.008 Sum_probs=36.6
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (444)
+..|++.+++ .-.+.+.+++.|.++++|++.||+..|+..+.
T Consensus 20 ~~ql~qL~~M-GF~d~~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 20 SKEMECLQAM-GFVNYNANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 4589999999 44788888999999999999999999997654
No 260
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=94.85 E-value=0.18 Score=41.02 Aligned_cols=71 Identities=11% Similarity=0.172 Sum_probs=55.7
Q ss_pred CceEEEEECC---CCceEEEEeCC-CCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceE
Q 013379 365 LLCRVGVRLP---DGRRMQRNFLR-TDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMI 439 (444)
Q Consensus 365 ~~~~i~iRlP---~G~r~~rrF~~-~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v 439 (444)
+.++|.|++| +|+.+...+.. ++||.+|-.-|... .+.+...-+|+.. .+. + +.+.||.+.|+.+ ++|
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~-~gip~~~QrL~~~--Gk~--L--~D~~tL~~y~I~~g~~l 98 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGE-IQIPANKQKLSGK--AGF--L--KDNMSLAHYNVGAGEIL 98 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHH-TTCCTTTSEEECS--SSB--C--CTTSBTTTTTCSSSCEE
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHH-HCCCHHHeEEEEC--CEE--C--CCCCcHHHCCCCCCCEE
Confidence 4689999999 89999999997 99999999999886 4666667777753 432 4 4479999999984 556
Q ss_pred EEE
Q 013379 440 SVT 442 (444)
Q Consensus 440 ~v~ 442 (444)
.|.
T Consensus 99 ~l~ 101 (111)
T 1we6_A 99 TLS 101 (111)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 261
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=94.80 E-value=0.19 Score=43.81 Aligned_cols=50 Identities=18% Similarity=0.074 Sum_probs=37.8
Q ss_pred hHHHHHHHcCC---------CCCcEEEEEeCCCCeeeEEEeCC-CChHHHHHHHHhhhhcC
Q 013379 227 EGKKVCTYYKL---------DSIPVVLVVDPITGQKMRSWCGM-VQPESLLEDLVPFMDGG 277 (444)
Q Consensus 227 eg~~~~~~y~~---------~~~P~l~ii~p~tg~~v~~~~G~-~~~~~~l~~L~~~l~~~ 277 (444)
+...+++.|++ ...|.++|||+ .|.++..+.|. .++++++..|.+.....
T Consensus 105 ~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~-~G~i~~~~~g~~~~~~~i~~~l~~~~~~~ 164 (170)
T 3me7_A 105 DLFKLLDAIDFRFMTAGNDFIHPNVVVVLSP-ELQIKDYIYGVNYNYLEFVNALRLARGEG 164 (170)
T ss_dssp HHHHHHHHTTCCCEEETTEEECCCEEEEECT-TSBEEEEEESSSCCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHCCeEEecCCCccccCceEEEECC-CCeEEEEEeCCCCCHHHHHHHHHHhhccc
Confidence 34566666553 34588999998 79998888885 68999999988886644
No 262
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=94.78 E-value=0.15 Score=38.56 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=54.1
Q ss_pred ceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 366 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 366 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
..+|.||..+|+.+.-....++||..|.+-+... .+.+....+|+.. .+. | +.+.||+++|+.+ ++|.+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~-~gi~~~~qrL~~~--G~~--L--~d~~tl~~~~i~~~~~i~l 72 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-QGVPMNSLRFLFE--GQR--I--ADNHTPKELGMEEEDVIEV 72 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHH-HTCCGGGEEEEET--TEE--C--CTTCCHHHHTCCTTEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-HCCCcccEEEEEC--CEE--e--CCCCCHHHcCCCCCCEEEE
Confidence 4689999999999999999999999999998876 3556667777653 553 4 4568999999985 45544
No 263
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=94.77 E-value=0.024 Score=41.64 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=33.7
Q ss_pred HHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013379 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (444)
Q Consensus 12 ~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (444)
+.|..+.+. ||+....|+.-|+.+|||++.||...=.
T Consensus 11 ~~Vk~LRe~-TGag~~dcKkAL~e~~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 11 ELLMKLRRK-TGYSFVNCKKALETCGGDLKQAEIWLHK 47 (64)
T ss_dssp HHHHHHHHH-HCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 478899999 9999999999999999999999987754
No 264
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=93.78 E-value=0.0052 Score=51.45 Aligned_cols=74 Identities=19% Similarity=0.221 Sum_probs=49.9
Q ss_pred cCC-eEEEEEeCCCchhhHHHHhhccCChhHHHHH---hcCEEEEEeecCChh-----------------------HHHH
Q 013379 179 QDK-WLLVNLQSTKEFSSHMLNRDTWANEAVSQTI---STNFIFWQVYDDTSE-----------------------GKKV 231 (444)
Q Consensus 179 ~~K-~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l---~~~fV~w~~~~~s~e-----------------------g~~~ 231 (444)
.+| ++||++..++|..|..+...+ ..+.+-+ ..++.+..++.+... ...+
T Consensus 24 ~gk~~vll~F~a~wC~~C~~~~~~l---~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (143)
T 2lus_A 24 KDKDIIGFYFSAHWCPPCRGFTPIL---ADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNV 100 (143)
Confidence 467 999999999999998764332 1222222 135666666655332 1357
Q ss_pred HHHcCCCCCcEEEEEeCCCCeeeEE
Q 013379 232 CTYYKLDSIPVVLVVDPITGQKMRS 256 (444)
Q Consensus 232 ~~~y~~~~~P~l~ii~p~tg~~v~~ 256 (444)
+..|++..+|+++||++ .|+++.+
T Consensus 101 ~~~~~v~~~P~~~lid~-~G~i~~~ 124 (143)
T 2lus_A 101 TAKYGITGIPALVIVKK-DGTLISM 124 (143)
Confidence 78899999999999996 6877655
No 265
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.75 E-value=0.23 Score=41.44 Aligned_cols=72 Identities=15% Similarity=0.231 Sum_probs=55.6
Q ss_pred CCCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 363 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 363 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
.....+|.||.. |+.+..++..++||.+|...|.... +......+|+.. .+. | +.+.||.++|+.+ ++|.|
T Consensus 29 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk~--L--~D~~tL~dygI~~gstI~l 100 (125)
T 1j8c_A 29 EPKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRF-KSQTDQLVLIFA--GKI--L--KDQDTLIQHGIHDGLTVHL 100 (125)
T ss_dssp CCCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHH-CSCSSSEEEEET--TEE--E--STTSCGGGTTCSSSEEEEE
T ss_pred CCCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHH-CcCcceEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEE
Confidence 346789999998 9999999999999999999998764 556667777753 443 4 4478999999985 45544
Q ss_pred E
Q 013379 442 T 442 (444)
Q Consensus 442 ~ 442 (444)
.
T Consensus 101 v 101 (125)
T 1j8c_A 101 V 101 (125)
T ss_dssp E
T ss_pred E
Confidence 3
No 266
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.71 E-value=0.038 Score=37.96 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=33.9
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
++.|.+++++ |-+.+.|+..|.++| |+|.|++-.|++
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~~~-n~e~A~~~L~~h 46 (47)
T 2ekk_A 10 QQQLQQLMDM--GFTREHAMEALLNTS-TMEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHHH--HCCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence 5689999999 999999999999997 999999998874
No 267
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=94.67 E-value=0.12 Score=40.24 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=54.7
Q ss_pred ceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 366 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 366 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
...|.|+..+|+.+.-.+..++||.+|..-|.... +.+....+|+.. .+. | +.+.||.++|+.+ ++|.+.
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~i~l~ 79 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 79 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHH-CCCGGGCEEEET--TEE--C--CTTSBSGGGTCCTTCEEEEE
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 35799999999999999999999999999998864 556667777753 443 4 3479999999985 555543
No 268
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=94.66 E-value=0.2 Score=40.75 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=56.4
Q ss_pred CceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 365 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
...+|.||.++|+.+.-.+..++||.+|-.-|.... +.+....+|+.. .+. | +.+.||.++|+. +++|.|.
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~gI~~gs~I~l~ 105 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 105 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHH-CCCTTTEEEEET--TEE--C--CSSCBTTTTTCCTTCEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHH-CcCcccEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 468999999999999999999999999999998764 556677778753 443 4 347999999998 4556554
No 269
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.66 E-value=0.25 Score=38.16 Aligned_cols=72 Identities=22% Similarity=0.204 Sum_probs=55.6
Q ss_pred CCceEEEEECCCC-ceEEE-EeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEE
Q 013379 364 SLLCRVGVRLPDG-RRMQR-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMIS 440 (444)
Q Consensus 364 ~~~~~i~iRlP~G-~r~~r-rF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~ 440 (444)
....+|.||..+| +.+.- .+..++||.+|..-|... .+.+....+|+.. .+. | +.+.||.++|+. +++|.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~-~gip~~~qrL~~~--gk~--L--~d~~tL~~~~i~~g~~i~ 77 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWAL-FDVRPECQRLFYR--GKQ--L--ENGYTLFDYDVGLNDIIQ 77 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHH-SCCCTTTEEEEET--TEE--C--CSSSBHHHHTCCTTCEEE
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHH-HCcChhhEEEEEC--CeE--C--CCCCCHHHCCCCCCCEEE
Confidence 3568999999999 67878 599999999999999876 4666677778764 443 4 457999999998 45565
Q ss_pred EE
Q 013379 441 VT 442 (444)
Q Consensus 441 v~ 442 (444)
+.
T Consensus 78 l~ 79 (89)
T 1wy8_A 78 LL 79 (89)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 270
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=94.65 E-value=0.14 Score=47.27 Aligned_cols=45 Identities=11% Similarity=0.006 Sum_probs=31.8
Q ss_pred HHHHHcCCCC---------CcEEEEEeCCCCeeeEEEeC-----CCChHHHHHHHHhhhh
Q 013379 230 KVCTYYKLDS---------IPVVLVVDPITGQKMRSWCG-----MVQPESLLEDLVPFMD 275 (444)
Q Consensus 230 ~~~~~y~~~~---------~P~l~ii~p~tg~~v~~~~G-----~~~~~~~l~~L~~~l~ 275 (444)
.++..|++.. .|..+|||+ .|.++..+.+ ..+.++++..|.....
T Consensus 118 ~vak~yGv~~~~~~~~G~~~p~tfvID~-dG~I~~~~~~~~~~~~pd~~evl~~L~~l~~ 176 (224)
T 3keb_A 118 DFHKRYGVLITEYPLSGYTSPAIILADA-ANVVHYSERLANTRDFFDFDAIEKLLQEGEQ 176 (224)
T ss_dssp THHHHTTCBCCSTTSTTCBCCEEEEECT-TCBEEEEEECSBTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCccccccccCCccCEEEEEcC-CCEEEEEEecCCCCCCCCHHHHHHHHHHhhh
Confidence 4566777643 699999997 6887766542 3467888888876654
No 271
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.60 E-value=0.25 Score=39.78 Aligned_cols=72 Identities=18% Similarity=0.222 Sum_probs=55.1
Q ss_pred CCCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 363 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 363 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
.+...+|.||..+|+ +...+..++||.+|...|.... +......+|+.. .+. | +.+.||.++|+.+ ++|.|
T Consensus 14 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~gi~~g~~i~l 85 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRF-KAHPDQLVLIFA--GKI--L--KDPDSLAQCGVRDGLTVHL 85 (106)
T ss_dssp CSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHH-TCCTTTEEEEET--TEE--C--CTTSCHHHHTCCTTEEEEE
T ss_pred CCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCcCcHHHcCCCCCCEEEE
Confidence 356789999999996 7889999999999999998764 556667778754 443 4 4478999999985 44544
Q ss_pred E
Q 013379 442 T 442 (444)
Q Consensus 442 ~ 442 (444)
.
T Consensus 86 ~ 86 (106)
T 1wx7_A 86 V 86 (106)
T ss_dssp E
T ss_pred E
Confidence 3
No 272
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=94.56 E-value=0.17 Score=39.93 Aligned_cols=71 Identities=21% Similarity=0.262 Sum_probs=54.7
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
.....|.||.++| .+.-.+..++||.+|-..|... .+.+....+|+. ..+. | .|.+.||.++|+.+ ++|.|
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~--L-~D~~~tL~~ygI~~gstl~l 84 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIV-ENTPIKRMQLYY--SGIE--L-ADDYRNLNEYGITEFSEIVV 84 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHH-SSSCTTTEEEEE--TTEE--E-CCTTSBHHHHTCCTTEEEEE
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHH-HCcCHHHEEEEE--CCEE--C-CCCcccHHHCCCCCCCEEEE
Confidence 3568999999999 7888999999999999999886 466677778874 4553 4 23338999999985 55544
No 273
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=94.53 E-value=0.15 Score=39.61 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=53.2
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
+|.||..+|+.+.-.+..++||.+|-.-|.... +.+....+|+.. .+. | +.+.||.++|+.+ ++|.+.
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~~i~~g~~l~l~ 70 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLIYS--GKQ--M--NDEKTAADYKILGGSVLHLV 70 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGCEEEET--TEE--C--CTTSBTTTTTCCTTCEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH-CcChhHEEEEEC--CeE--C--CCCCcHHHcCCCCCCEEEEE
Confidence 688999999999999999999999999998764 556666777763 332 4 4488999999984 555543
No 274
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.51 E-value=0.044 Score=41.60 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=36.8
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcC-CCHHHHHHHHhcCCCC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATS-WKLDEAIQLFYVGNES 53 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~-w~le~Av~~~~~~~~~ 53 (444)
++.|.+.+++ |-+.+.|++.|..++ ||+|.|++-.|++.+.
T Consensus 10 e~~v~~L~~M--GF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 10 ESVIIQLVEM--GFPMDACRKAVYYTGNSGAEAAMNWVMSHMDD 51 (74)
T ss_dssp HHHHHHHHHH--SCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 5589999999 999999999999998 5899999999997554
No 275
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.47 E-value=0.051 Score=38.01 Aligned_cols=40 Identities=10% Similarity=0.068 Sum_probs=36.0
Q ss_pred hHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 9 ~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
+-++.|++.|++ |-|.+.|++-|..++||+|.|.+...+.
T Consensus 8 ~~e~~I~~L~~l--GF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 8 QLSSEIERLMSQ--GYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp CSHHHHHHHHHH--TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHc--CCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 345679999999 9999999999999999999999988764
No 276
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=94.47 E-value=0.64 Score=42.38 Aligned_cols=108 Identities=11% Similarity=0.112 Sum_probs=67.1
Q ss_pred cccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCC--CCc
Q 013379 164 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLD--SIP 241 (444)
Q Consensus 164 ~~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~--~~P 241 (444)
+-.-+.+.+-.......+++++.+.+.++.+|..+. ..| ..|..-.+.++.|.-++.+..+...+++.|++. .+|
T Consensus 115 v~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~-~~~--~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~~~P 191 (227)
T 4f9z_D 115 VTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENM-HRY--QKAAKLFQGKILFILVDSGMKENGKVISFFKLKESQLP 191 (227)
T ss_dssp EEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHH-HHH--HHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGGGCS
T ss_pred eeecCcccHHHHhccCCceEEEEEEcCCcchHHHHH-HHH--HHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcccCC
Confidence 444555555555444445555666666666665542 222 224444455666665676655666788999997 799
Q ss_pred EEEEEeCCCCeeeEEE-eCCCChHHHHHHHHhhhh
Q 013379 242 VVLVVDPITGQKMRSW-CGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 242 ~l~ii~p~tg~~v~~~-~G~~~~~~~l~~L~~~l~ 275 (444)
.|+|++...+.. ..+ .|.++++.+...+..+++
T Consensus 192 ~~~i~~~~~~~k-y~~~~~~~t~~~i~~Fv~~~~~ 225 (227)
T 4f9z_D 192 ALAIYQTLDDEW-DTLPTAEVSVEHVQNFCDGFLS 225 (227)
T ss_dssp EEEEEESSSCCE-EEETTCCCCHHHHHHHHHHHHT
T ss_pred EEEEEECCCCcc-ccCCcCCCCHHHHHHHHHHHhC
Confidence 999999754432 233 366888888777777654
No 277
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=94.46 E-value=0.22 Score=41.77 Aligned_cols=76 Identities=11% Similarity=0.155 Sum_probs=56.8
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCC-------------------------cccC-
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGA-------------------------TKSL- 421 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr-------------------------~~~l- 421 (444)
.|.||||||+..+.+-.-+.+|..+...|...+.-+....|.|+...|.. ...|
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 59999999999999999999999999998877643334568888755422 0011
Q ss_pred ------CCCcCCChhhcCCC-CceEEEEe
Q 013379 422 ------DYDSKLTFEDSGLA-NAMISVTW 443 (444)
Q Consensus 422 ------~~~~~~Tl~e~gL~-~~~v~v~~ 443 (444)
..|.+.||.|-|+. +.+|++++
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 12348999999998 67788875
No 278
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=94.45 E-value=0.23 Score=43.56 Aligned_cols=87 Identities=15% Similarity=0.296 Sum_probs=52.6
Q ss_pred cCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHH----hcCEEEEEeecCChhHH-------------------HHHHH
Q 013379 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSEGK-------------------KVCTY 234 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l----~~~fV~w~~~~~s~eg~-------------------~~~~~ 234 (444)
.+||++|++. ..+|..|..-. +.+.++. ..++.++++..++.+.. .++..
T Consensus 50 ~Gk~vvl~f~~~~~c~~C~~el------~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 123 (179)
T 3ixr_A 50 TNQWLVLYFYPKDNTPGSSTEG------LEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKA 123 (179)
T ss_dssp TTSEEEEEECSCTTSHHHHHHH------HHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHH
T ss_pred CCCCEEEEEEcCCCCCchHHHH------HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHH
Confidence 3577777777 66677775432 2233322 34577777777765441 23455
Q ss_pred cCCC------------CCcEEEEEeCCCCeeeEEEeCCC---ChHHHHHHHHh
Q 013379 235 YKLD------------SIPVVLVVDPITGQKMRSWCGMV---QPESLLEDLVP 272 (444)
Q Consensus 235 y~~~------------~~P~l~ii~p~tg~~v~~~~G~~---~~~~~l~~L~~ 272 (444)
|++. ..|.++|||+ .|.++..+.|.. ..++++..|..
T Consensus 124 ~gv~~~~~~~g~~~~~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~il~~l~~ 175 (179)
T 3ixr_A 124 FDVIKEKTMYGRQVIGIERSTFLIGP-THRIVEAWRQVKVPGHAEEVLNKLKA 175 (179)
T ss_dssp TTCEEEECCC--CEEEECCEEEEECT-TSBEEEEECSCCSTTHHHHHHHHHHH
T ss_pred cCCcccccccCcccCCcceEEEEECC-CCEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 6552 2588999997 699888886532 34556655554
No 279
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.44 E-value=0.15 Score=38.10 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=36.3
Q ss_pred HHHHHHhhcccccCC-CHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013379 10 KQSMVSSFLEIAVGQ-TAETAVQFLQATSWKLDEAIQLFYVGNE 52 (444)
Q Consensus 10 ~~~~i~~F~~itt~~-~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (444)
.+-+|.|..+| ||. |...-.+.|+++++||..||...-+.+.
T Consensus 24 ~q~lLnQLrEI-TGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~~ 66 (80)
T 1vdl_A 24 QQTFLNQLREI-TGINDAQILQQALKDSNGNLELAVAFLTAKNA 66 (80)
T ss_dssp HHHHHHHHHHH-SCCCCHHHHHHHHHHHTSCHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHH-hCCCcHHHHHHHHHhccCCHHHHHHHHhcccc
Confidence 34588999999 776 8999999999999999999999877543
No 280
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=94.44 E-value=0.13 Score=44.24 Aligned_cols=90 Identities=11% Similarity=0.130 Sum_probs=52.8
Q ss_pred cCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHH-H------------------HHHHcCCC
Q 013379 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-K------------------VCTYYKLD 238 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~-~------------------~~~~y~~~ 238 (444)
.+|+++|++. .++|..|..-...+ .....++-..++++++++.++++.. . +++.|++.
T Consensus 29 ~Gk~vvl~f~~~~~c~~C~~e~~~l--~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~ 106 (157)
T 4g2e_A 29 KGKVVVLAFYPAAFTQVCTKEMCTF--RDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVA 106 (157)
T ss_dssp TTSCEEEEECSCTTCCC------CC--SCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCE
T ss_pred CCCeEEEEecCCCCCCccccchhhc--ccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCc
Confidence 4788888887 78888886532221 1222334445788888888877652 2 34455541
Q ss_pred -----------CCcEEEEEeCCCCeeeEEEeCC-----CChHHHHHHHH
Q 013379 239 -----------SIPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLV 271 (444)
Q Consensus 239 -----------~~P~l~ii~p~tg~~v~~~~G~-----~~~~~~l~~L~ 271 (444)
..|+++|||+ .|.++..+.|. .+.+++++.|.
T Consensus 107 ~~~~~~~~~~~~~p~tflID~-~G~I~~~~~~~~~~~~~~~~eil~~l~ 154 (157)
T 4g2e_A 107 WEFPALPGYVLAKRAVFVIDK-EGKVRYKWVSDDPTKEPPYDEIEKVVK 154 (157)
T ss_dssp EECTTSTTCEEECEEEEEECT-TSBEEEEEEESSTTCCCCHHHHHHHHH
T ss_pred cccccCCCcceeeeeEEEECC-CCEEEEEEECCCCCCCCCHHHHHHHHH
Confidence 3567889997 68887766542 34566666554
No 281
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=94.42 E-value=0.11 Score=45.22 Aligned_cols=95 Identities=12% Similarity=0.086 Sum_probs=60.7
Q ss_pred HcCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHH-H------------------HHHHcCC
Q 013379 178 VQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-K------------------VCTYYKL 237 (444)
Q Consensus 178 ~~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~-~------------------~~~~y~~ 237 (444)
.++||++|++. ..+|..|..-...+ +....+|-+.++.+++++.++++.. . +++.|++
T Consensus 31 ~~Gk~vvl~f~~~~~cp~C~~e~~~l--~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv 108 (164)
T 4gqc_A 31 KRGRPAVLIFFPAAFSPVCTKELCTF--RDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNV 108 (164)
T ss_dssp HTSSCEEEEECSCTTCCEECSSCEES--CCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTC
T ss_pred cCCCEEEEEEeCCCCCCCcccchhhh--hhhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCC
Confidence 46899999888 78888885421111 1222334445788888888876652 2 3445554
Q ss_pred C----------CCcEEEEEeCCCCeeeEEEeCC-----CChHHHHHHHHhhhh
Q 013379 238 D----------SIPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLVPFMD 275 (444)
Q Consensus 238 ~----------~~P~l~ii~p~tg~~v~~~~G~-----~~~~~~l~~L~~~l~ 275 (444)
. ..|.++|||+ +|.+...+.+. .+.++++..|.+...
T Consensus 109 ~~~~~~~~~~~~~p~tflID~-~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~ 160 (164)
T 4gqc_A 109 YHEDLKGLKMVAKRAVFIVKP-DGTVAYKWVTDNPLNEPDYDEVVREANKIAG 160 (164)
T ss_dssp EEEEETTEEEEECCEEEEECT-TSBEEEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred cccccccCcCCeeeEEEEECC-CCEEEEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence 1 3577889997 68887766542 367888888776543
No 282
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=94.42 E-value=0.24 Score=39.13 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=57.2
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
+..+.|-|+.+.|+.+.-.+..+|||.+|-.-|..+ .|.+...-+|.-. .+. | +...||++.|+.+ ++|-+
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k-~Gip~~qQrLif~--Gk~--L--kD~~TL~dY~I~dgstLhL 90 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQ-IGTQPNKIVLQKG--GSV--L--KDHISLEDYEVHDQTNLEL 90 (93)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHH-HTCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEE
T ss_pred CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHH-hCCCHHHEEEEeC--CEE--c--cCcCCHHHcCCCCCCEEEE
Confidence 468999999999999999999999999999999876 3667777788764 343 4 5578999999985 55544
No 283
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=94.41 E-value=0.28 Score=43.41 Aligned_cols=89 Identities=17% Similarity=0.132 Sum_probs=56.4
Q ss_pred cCCeEEEEEeC-CCchhhHHHHhhccCChhHHHHH----hcCEEEEEeecCChhH-HHHH--------------------
Q 013379 179 QDKWLLVNLQS-TKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSEG-KKVC-------------------- 232 (444)
Q Consensus 179 ~~K~LlVyl~~-~~~~~~~~f~rdv~~~~~V~~~l----~~~fV~w~~~~~s~eg-~~~~-------------------- 232 (444)
.+||+||++.. .+|..|..-. +.+.++. ..++.+++++.++.+. ..++
T Consensus 29 ~Gk~vvl~F~~~~~Cp~C~~e~------~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~ 102 (186)
T 1n8j_A 29 EGRWSVFFFYPADFTFVSPTEL------GDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGA 102 (186)
T ss_dssp TTSEEEEEECSCTTCSHHHHHH------HHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSH
T ss_pred CCCeEEEEEECCCCCCccHHHH------HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchH
Confidence 46888888874 7787776432 2222222 2467777777766543 2233
Q ss_pred --HHcCCC------CCcEEEEEeCCCCeeeEEEeCCC----ChHHHHHHHHhhh
Q 013379 233 --TYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 274 (444)
Q Consensus 233 --~~y~~~------~~P~l~ii~p~tg~~v~~~~G~~----~~~~~l~~L~~~l 274 (444)
..|++. ..|+.+|||+ .|.++..+.|.. +.++++..|....
T Consensus 103 ~~~~ygv~~~~~g~~~p~~~lID~-~G~i~~~~~~~~~~~~~~~~l~~~l~~l~ 155 (186)
T 1n8j_A 103 LTRNFDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIKAAQ 155 (186)
T ss_dssp HHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HHHHhCCccCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 344443 2699999997 799888887743 4777777776554
No 284
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=94.39 E-value=0.18 Score=41.12 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=56.1
Q ss_pred CceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 365 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
...+|.||..+|+.+.-++..++||..|-..|.... +.+....+|+. -.+. | +.+.||.++|+. +++|.+.
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~--~Gk~--L--~D~~tL~~~gI~~gs~I~l~ 105 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHLV 105 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEE--TTEE--C--CTTSBTTTTTCCTTCEEEEE
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHh-CCChHHEEEEE--CCEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence 368999999999999999999999999999998864 55666777874 3443 4 457899999998 4556543
No 285
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=94.31 E-value=0.25 Score=39.55 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=54.5
Q ss_pred CceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 365 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
...+|.||.. |+.+.-.+..++||.+|..-|.... +.+....+|+.. ++. | +.+.||.++|+.+ ++|.|.
T Consensus 24 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~gI~~g~~I~l~ 94 (101)
T 2klc_A 24 KIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRF-KSHTDQLVLIFA--GKI--L--KDQDTLSQHGIHDGLTVHLV 94 (101)
T ss_dssp CCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHH-TCCGGGEEEEET--TEE--E--CTTCCTGGGTCCTTCEEEEE
T ss_pred CeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCcCcHHHcCCCCCCEEEEE
Confidence 4689999999 8889999999999999999998764 556667777653 443 4 4578999999984 555443
No 286
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=94.31 E-value=0.24 Score=43.24 Aligned_cols=86 Identities=13% Similarity=0.073 Sum_probs=53.2
Q ss_pred CCeEEEEEeCCC-chhhHHHHhhccCChhHHHHHh-cCEEEEEeecCChhH--------------------HHHHHHcCC
Q 013379 180 DKWLLVNLQSTK-EFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG--------------------KKVCTYYKL 237 (444)
Q Consensus 180 ~K~LlVyl~~~~-~~~~~~f~rdv~~~~~V~~~l~-~~fV~w~~~~~s~eg--------------------~~~~~~y~~ 237 (444)
+||+||++...+ |..|.... +.+.++.+ .++.++.++.++++. ..+++.|++
T Consensus 44 gk~vvl~F~~t~~C~~C~~~~------~~l~~l~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 117 (175)
T 1xvq_A 44 GKSVLLNIFPSVDTPVCATSV------RTFDERAAASGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGV 117 (175)
T ss_dssp TSCEEEEECSCCCSSCCCHHH------HHHHHHHHHTTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTC
T ss_pred CCEEEEEEEeCCCCchHHHHH------HHHHHHHhhcCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCC
Confidence 577777777666 66665432 23333332 456666666654432 246677888
Q ss_pred CCC---------cEEEEEeCCCCeeeEEEeC-CC----ChHHHHHHHHh
Q 013379 238 DSI---------PVVLVVDPITGQKMRSWCG-MV----QPESLLEDLVP 272 (444)
Q Consensus 238 ~~~---------P~l~ii~p~tg~~v~~~~G-~~----~~~~~l~~L~~ 272 (444)
... |..+||++ +|.++..+.| .. ..+++++.|.+
T Consensus 118 ~~~~~~~~g~~~p~~~lid~-~G~I~~~~~g~~~~~~~~~~~~l~~l~~ 165 (175)
T 1xvq_A 118 TIADGPMAGLLARAIVVIGA-DGNVAYTELVPEIAQEPNYEAALAALGA 165 (175)
T ss_dssp BBCSSTTTTSBCSEEEEECT-TSBEEEEEECSBTTCCCCHHHHHHHHHH
T ss_pred cccccccCCcccceEEEECC-CCeEEEEEECCCcCCCCCHHHHHHHHHh
Confidence 655 99999996 7998888864 22 34555555553
No 287
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=94.27 E-value=0.21 Score=39.96 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=55.0
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
+...+|.||..+|+ ..-.+..++||.+|..-|.... +.+....+|+.. .+. | +.+.||.++|+.+ ++|.|.
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk~--L--~D~~tL~~ygI~~gstI~l~ 91 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRF-KAHPDQLVLIFA--GKI--L--KDPDSLAQCGVRDGLTVHLV 91 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTSBHHHHTCCTTCEEEEE
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCcCcHHHCCCCCCCEEEEE
Confidence 46799999999996 6889999999999999998764 556667777753 443 4 4578999999984 555543
No 288
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=94.25 E-value=0.061 Score=37.32 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=35.2
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (444)
++.+...+++=-.++..++++.|+++|||++.||+..++..
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~ 45 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEN 45 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 45677777776788999999999999999999999998763
No 289
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.24 E-value=0.16 Score=39.95 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=52.6
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
....+|.||..+|+.+..++..+++|.+|..-|.... ....+|+. -.+. | .|.+.||.++|+.+ ++|.|.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~----~~~qrLi~--~Gk~--L-~D~~~tL~~y~i~~g~~i~l~ 75 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ----ESQMKLIY--QGRL--L-QDPARTLSSLNITNNCVIHCH 75 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST----TTTCEEEE--TTEE--C-CCSSCBTTTTTCCTTEEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC----cCcEEEEE--CCEE--c-cCCcCCHHHcCCCCCCEEEEE
Confidence 3568999999999999999999999999999987653 44666764 3443 4 34348999999985 445443
No 290
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=94.18 E-value=0.24 Score=39.27 Aligned_cols=82 Identities=18% Similarity=0.119 Sum_probs=54.4
Q ss_pred CCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeC
Q 013379 180 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCG 259 (444)
Q Consensus 180 ~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G 259 (444)
.++.+|.+..++|..|..+.. +|. -+..++-+..++++.++...++..|+ .+.|.+ ++ +|+.+ .+ |
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~-~L~------~l~~~i~~~~vdi~~~~~~el~~~~g-~~vP~l-~~---~g~~~-~~-~ 80 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKE-VLQ------PYKDRFILQEVDITLPENSTWYERYK-FDIPVF-HL---NGQFL-MM-H 80 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHH-HTS------TTSSSSEEEEEETTSSTTHHHHHHSS-SSCSEE-EE---SSSEE-EE-S
T ss_pred CCCEEEEEeCCCCcchHHHHH-HHH------HhhhCCeEEEEECCCcchHHHHHHHC-CCCCEE-EE---CCEEE-Ee-c
Confidence 345677788899999988732 222 11234566667887556678899999 999976 34 46654 33 4
Q ss_pred CCChHHHHHHHHhhhh
Q 013379 260 MVQPESLLEDLVPFMD 275 (444)
Q Consensus 260 ~~~~~~~l~~L~~~l~ 275 (444)
..+++.+...|..+++
T Consensus 81 g~~~~~l~~~l~~~~~ 96 (100)
T 1wjk_A 81 RVNTSKLEKQLRKLSG 96 (100)
T ss_dssp SCCHHHHHHHHHSSSC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4788877777765543
No 291
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.16 E-value=0.072 Score=37.64 Aligned_cols=45 Identities=4% Similarity=0.148 Sum_probs=37.6
Q ss_pred chHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013379 8 NDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (444)
Q Consensus 8 ~~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (444)
+.-..+++++.++ .=+|.+..++.|..+||||+.||...+..+.+
T Consensus 7 e~~a~~L~~L~eM-GF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~ 51 (54)
T 2cp8_A 7 GQTAALMAHLFEM-GFCDRQLNLRLLKKHNYNILQVVTELLQLSGP 51 (54)
T ss_dssp TTHHHHHHHHHHH-TCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSS
T ss_pred HhhHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence 3334489999999 44799999999999999999999999876544
No 292
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.14 E-value=0.23 Score=39.04 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=53.8
Q ss_pred CCCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCc-eEEE
Q 013379 363 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANA-MISV 441 (444)
Q Consensus 363 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~-~v~v 441 (444)
.+...+|.|+.. |+.+.-.+..++||.+|..-|.... +.+....+|+.. .+. | +.+.||.++|+.+. +|.+
T Consensus 14 ~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~-gip~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~i~l 85 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYL-HCNADRLVLIFT--GKI--L--RDQDILSQRGILDGSTVHV 85 (96)
T ss_dssp CSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHT-CSCTTTBCCEET--TEE--C--CTTSCHHHHTCCTTEEEEC
T ss_pred CCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHh-CCCHHHEEEEEC--CEE--C--CCcCCHHHCCCCCCCEEEE
Confidence 456789999998 9999999999999999999998863 555555666543 443 4 45789999999854 4443
No 293
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=94.05 E-value=0.088 Score=38.05 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=36.6
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNES 53 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~~ 53 (444)
++.|.++.++=-+.|.++.+..|++|++|+|.||+..++....
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE 52 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCC
Confidence 4467777777577899999999999999999999999987554
No 294
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=93.90 E-value=0.41 Score=43.82 Aligned_cols=89 Identities=11% Similarity=0.135 Sum_probs=55.4
Q ss_pred cCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHH----hcCEEEEEeecCChhH-------------------------
Q 013379 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSEG------------------------- 228 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l----~~~fV~w~~~~~s~eg------------------------- 228 (444)
.+||+|||+. ..+|..|..-. +.+.++. ..++.+++++.++.+.
T Consensus 55 ~Gk~vvl~F~patwCp~C~~e~------p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~ 128 (221)
T 2c0d_A 55 GQKYCCLLFYPLNYTFVCPTEI------IEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDI 128 (221)
T ss_dssp TTCEEEEEECCCCTTTCCHHHH------HHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECT
T ss_pred CCCeEEEEEEcCCCCCchHHHH------HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECC
Confidence 4677888887 77777765432 2222221 2356666666655432
Q ss_pred -HHHHHHcCC-----CCCcEEEEEeCCCCeeeEEEeCC----CChHHHHHHHHhhh
Q 013379 229 -KKVCTYYKL-----DSIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVPFM 274 (444)
Q Consensus 229 -~~~~~~y~~-----~~~P~l~ii~p~tg~~v~~~~G~----~~~~~~l~~L~~~l 274 (444)
..++..|++ ..+|.++|||+ .|.++..+.|. .+.++++..|....
T Consensus 129 ~~~~~~~ygv~~~~g~~~P~~~lID~-~G~I~~~~~g~~~~~~~~~ell~~l~~L~ 183 (221)
T 2c0d_A 129 NKDISKNYNVLYDNSFALRGLFIIDK-NGCVRHQTVNDLPIGRNVQEVLRTIDSII 183 (221)
T ss_dssp TSHHHHHTTCEETTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred chHHHHHcCCcccCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 134455666 25799999996 69988887664 35677877776654
No 295
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=93.77 E-value=0.28 Score=39.14 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=54.1
Q ss_pred CCCceEEEEECCCCceEEE--EeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCC-C-Cce
Q 013379 363 RSLLCRVGVRLPDGRRMQR--NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL-A-NAM 438 (444)
Q Consensus 363 ~~~~~~i~iRlP~G~r~~r--rF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL-~-~~~ 438 (444)
.++..+|-||..+|+.+.- .+..++||..|-.-|.....+.+...-+|+.. ++. | +.+.||.++|+ . +++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~--Gk~--L--~D~~tL~dy~I~~~g~t 89 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK--GKV--L--HDNLFLSDLKVTPANST 89 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET--TEE--E--CTTCBGGGSCCBTTBCE
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC--CEE--C--cCcCCHHHcCcCCCCCE
Confidence 4567899999999987555 56799999999999933345666777788753 443 4 45789999999 6 566
Q ss_pred EEE
Q 013379 439 ISV 441 (444)
Q Consensus 439 v~v 441 (444)
|.+
T Consensus 90 i~l 92 (98)
T 4a20_A 90 ITV 92 (98)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 296
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=93.76 E-value=0.15 Score=41.02 Aligned_cols=89 Identities=12% Similarity=0.154 Sum_probs=53.9
Q ss_pred HHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChh---HHHHHHHcCCCCCcEEEEEe
Q 013379 171 KAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE---GKKVCTYYKLDSIPVVLVVD 247 (444)
Q Consensus 171 ~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~e---g~~~~~~y~~~~~P~l~ii~ 247 (444)
+.+....+ ++.++| +..++|..|..+.. +.+-+...|.+..++.+... ...++..|++..+|++ ++
T Consensus 11 ~~~~~~~~-~~~vv~-f~a~~C~~C~~~~~-------~l~~~~~~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~-~~- 79 (116)
T 2e7p_A 11 KKAKELAS-SAPVVV-FSKTYCGYCNRVKQ-------LLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNV-FI- 79 (116)
T ss_dssp HHHHHHHT-SSSEEE-EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE-EE-
T ss_pred HHHHHHHc-CCCEEE-EECCCChhHHHHHH-------HHHHcCCCeEEEEccCCCChHHHHHHHHHHhCCCCcCEE-EE-
Confidence 33444444 456666 88899999998742 22333456777655544321 1457889999999999 55
Q ss_pred CCCCeeeEEEeCCC---ChHHHHHHHHh
Q 013379 248 PITGQKMRSWCGMV---QPESLLEDLVP 272 (444)
Q Consensus 248 p~tg~~v~~~~G~~---~~~~~l~~L~~ 272 (444)
+|+.+..+.|.. +.+.|...|..
T Consensus 80 --~g~~v~~~~~~~~~~~~~~l~~~l~~ 105 (116)
T 2e7p_A 80 --GGKQIGGCDTVVEKHQRNELLPLLQD 105 (116)
T ss_dssp --TTEEEECHHHHHHHHHTTCHHHHHHH
T ss_pred --CCEEECChHHHHHHHhCChHHHHHHH
Confidence 477776655533 44444444443
No 297
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=93.75 E-value=0.17 Score=40.48 Aligned_cols=71 Identities=14% Similarity=0.127 Sum_probs=51.9
Q ss_pred CCceEEEEECCCCc--eEEEEeCCCCchHHHHHHHHhhcCCCC-CcCeEEEcCCCCCcccCCCCcCCChhhc--CCCC-c
Q 013379 364 SLLCRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLEGSE-MKPFRLTHAIPGATKSLDYDSKLTFEDS--GLAN-A 437 (444)
Q Consensus 364 ~~~~~i~iRlP~G~--r~~rrF~~~~~l~~l~~fv~~~~~~~~-~~~f~L~~~fPrr~~~l~~~~~~Tl~e~--gL~~-~ 437 (444)
+..+.|.||.++|+ .+.-....++||..|-+-|....++.. ....+|+.. +|. | +.+.||.++ |+.+ +
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~--Gk~--L--~D~~tL~~y~~~I~~~~ 94 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS--GRL--L--PDHLQLKDILRKQDEYH 94 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET--TEE--E--CTTSBTHHHHTTTCSEE
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC--CEE--C--CCCCCHHHHhcCCCCCC
Confidence 45689999999998 455566999999999999998655544 366677753 553 4 457899999 9985 4
Q ss_pred eEE
Q 013379 438 MIS 440 (444)
Q Consensus 438 ~v~ 440 (444)
+|.
T Consensus 95 tih 97 (99)
T 2kdb_A 95 MVH 97 (99)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 298
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=93.73 E-value=0.56 Score=39.87 Aligned_cols=44 Identities=5% Similarity=0.080 Sum_probs=31.8
Q ss_pred HHHHHcCCCCCc------EEEEEeCCCCeeeEEEeCCCC---hHHHHHHHHhhhh
Q 013379 230 KVCTYYKLDSIP------VVLVVDPITGQKMRSWCGMVQ---PESLLEDLVPFMD 275 (444)
Q Consensus 230 ~~~~~y~~~~~P------~l~ii~p~tg~~v~~~~G~~~---~~~~l~~L~~~l~ 275 (444)
.++..|++...| ..+|| + .|.++..+.|... .+.+++.|...++
T Consensus 102 ~~~~~~gv~~~p~~g~~~~~~li-~-~G~i~~~~~g~~~~~~~~~~~~~l~~~l~ 154 (159)
T 2a4v_A 102 EFIGLLGAKKTPLSGSIRSHFIF-V-DGKLKFKRVKISPEVSVNDAKKEVLEVAE 154 (159)
T ss_dssp HHHHHHTCBSSSSSCBCCEEEEE-E-TTEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccccCCccceEEEE-c-CCEEEEEEccCCccccHHHHHHHHHHHHH
Confidence 456778887777 77778 5 7999988888643 4567777776665
No 299
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=93.73 E-value=0.38 Score=37.94 Aligned_cols=72 Identities=19% Similarity=0.228 Sum_probs=54.7
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
...++|.|+-.+|+.+..+...+++|+.|++-+.... +.....++|+-. ++. + ..+.|.+++++.. ..|-|.
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~-gi~~~~~rf~fd--G~~--l--~~~~Tp~dl~medgD~Idv~ 87 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVF 87 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHh-CCCccceEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 4578899999999999999999999999999876553 545566666654 443 3 5678999999984 555443
No 300
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=93.72 E-value=0.3 Score=39.94 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=55.2
Q ss_pred CceEEEEECCC----------CceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCC
Q 013379 365 LLCRVGVRLPD----------GRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL 434 (444)
Q Consensus 365 ~~~~i~iRlP~----------G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL 434 (444)
+.++|.|++|+ |+.+.-.+..++||.+|-.-|... .+.+....+|+.. .+. | +.+.||.++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrL~~~--Gk~--L--~D~~tL~~y~i 96 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEA-TGMPAGKQKLQYE--GIF--I--KDSNSLAYYNM 96 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHH-SSCCTTTEEEEET--TEE--E--CTTSBHHHHTC
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHH-HCCChHHEEEEEC--CEE--C--CCCCCHHHCCC
Confidence 46899999996 778889999999999999999876 4666667777753 443 4 44789999999
Q ss_pred C-CceEEEE
Q 013379 435 A-NAMISVT 442 (444)
Q Consensus 435 ~-~~~v~v~ 442 (444)
. .++|.+.
T Consensus 97 ~~g~~i~lv 105 (115)
T 1we7_A 97 ASGAVIHLA 105 (115)
T ss_dssp CSSCEEEEE
T ss_pred CCCCEEEEE
Confidence 8 4555543
No 301
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.69 E-value=0.19 Score=40.54 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=53.0
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 367 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 367 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
.+|.||..+|+.+.-.+..++||.+|-..|... .+.+...-+|+.. ++. | +.+.||.++|+.+ ++|.+.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrLi~~--Gk~--L--~D~~tL~~~~i~~g~~i~lv 71 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQS-ISCEESQIKLIYS--GKV--L--QDSKTVSECGLKDGDQVVFM 71 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHT-TTSCGGGCEEEET--TEE--C--CTTSBTTTTTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCCChhhEEEEEC--CEE--C--CCcCCHHHcCCCCCCEEEEE
Confidence 468899999999999999999999999999875 3555566677753 443 4 3479999999984 555543
No 302
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=93.68 E-value=0.35 Score=43.80 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=56.4
Q ss_pred cCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHH----hcCEEEEEeecCChhH-------------------------
Q 013379 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSEG------------------------- 228 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l----~~~fV~w~~~~~s~eg------------------------- 228 (444)
.+||+|||+. .++|..|..-. +.+.++. ..++.+++++.++.+.
T Consensus 47 ~Gk~vvl~F~pat~C~~C~~e~------~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~ 120 (211)
T 2pn8_A 47 RGKYLVFFFYPLDFTFVCPTEI------IAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDL 120 (211)
T ss_dssp TTSEEEEEECSCTTSSHHHHHH------HHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECT
T ss_pred CCCeEEEEEECCCCCCCCHHHH------HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECC
Confidence 4678888888 77787775432 2222222 2356666666665542
Q ss_pred -HHHHHHcCCC------CCcEEEEEeCCCCeeeEEEeCCC----ChHHHHHHHHhhh
Q 013379 229 -KKVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 274 (444)
Q Consensus 229 -~~~~~~y~~~------~~P~l~ii~p~tg~~v~~~~G~~----~~~~~l~~L~~~l 274 (444)
..++..|++. .+|.++|||+ .|.++..+.|.. +.++++..|....
T Consensus 121 ~~~~~~~ygv~~~~~g~~~p~~~lID~-~G~I~~~~~g~~~~~~~~~ell~~l~~l~ 176 (211)
T 2pn8_A 121 THQISKDYGVYLEDSGHTLRGLFIIDD-KGILRQITLNDLPVGRSVDETLRLVQAFQ 176 (211)
T ss_dssp TSHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred chHHHHHcCCcccCCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 1244556663 4899999997 699888876643 5677877776654
No 303
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.59 E-value=0.62 Score=37.59 Aligned_cols=72 Identities=19% Similarity=0.228 Sum_probs=53.8
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
...++|.|+..+|+.+..+...+++|..|++.+.... +.....++|+-. .+. + ..+.|.+++++.. ..|-|.
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~-gi~~~~~rf~Fd--G~~--l--~~~~Tp~dl~medgD~Idv~ 94 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVF 94 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHH-TCCTTTSCEESS--SSB--C--CTTSCTTTTTCCTTEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 4578999999999999999999999999999866543 444455555543 443 3 5678999999985 445443
No 304
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=93.58 E-value=0.27 Score=37.92 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=55.4
Q ss_pred ceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 366 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 366 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
-.+|-|+..+|+.+...+..++||.+|-.-|.... +.+....+|+.. ++ .+ .+.+.||+++|+.+ ++|.+.
T Consensus 10 ~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk--~l-L~D~~tL~~y~I~~gs~i~lv 81 (84)
T 2kk8_A 10 HMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQ-HIPVSKQTLIVD--GI--VI-LREDLTVEQCQIVPTSDIQLE 81 (84)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHH-TCCGGGEEEEET--TE--EC-CCSSSBHHHHTCCTTSCEEEE
T ss_pred ceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHH-CcChHHEEEEEC--CE--Ee-cCCcCCHHHcCCCCCCEEEEE
Confidence 46899999999999999999999999999998864 566677778753 43 21 24579999999984 556543
No 305
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.52 E-value=0.23 Score=40.27 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=55.4
Q ss_pred CceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCC---------------CcCeEEEcCCCCCcccCCCCcCCCh
Q 013379 365 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSE---------------MKPFRLTHAIPGATKSLDYDSKLTF 429 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~---------------~~~f~L~~~fPrr~~~l~~~~~~Tl 429 (444)
...+|-|+.-+|+.+.-....++||.+|-.-|.... +.+ ...|.|+ |..+. | .+.+.||
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~-~i~~~~q~g~~~isw~~~w~q~~Li--~~Gk~--L-~dD~~tL 79 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYV-QLKQEREGGVQHISWSYVWRTYHLT--SAGEK--L-TEDRKKL 79 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHH-HHHHHHTTCCCCCCHHHHHTTEEEE--SSSCE--E-CCSSSBH
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHh-CCCcccccCcceeeeeecceeEEEE--eCCcC--c-cCCcCCH
Confidence 458999999999999999999999999999988763 111 1468898 56764 5 3567999
Q ss_pred hhcCCCC-ceEEE
Q 013379 430 EDSGLAN-AMISV 441 (444)
Q Consensus 430 ~e~gL~~-~~v~v 441 (444)
.+.|+.+ ++|.+
T Consensus 80 ~dygI~~g~~l~l 92 (105)
T 1v2y_A 80 RDYGIRNRDEVSF 92 (105)
T ss_dssp HHHTCCSSEEEEE
T ss_pred HHcCCCCCCEEEE
Confidence 9999995 55544
No 306
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.48 E-value=0.35 Score=38.14 Aligned_cols=70 Identities=11% Similarity=0.016 Sum_probs=51.7
Q ss_pred CCCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCce-EEE
Q 013379 363 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAM-ISV 441 (444)
Q Consensus 363 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~-v~v 441 (444)
....++|.|++ +|+.+...+..++||.+|-.-|.... +.+...-+|+ |..+. | + +.||.++|+.+.. |+|
T Consensus 14 ~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~t-gip~~~QrL~--~~Gk~--L--d-d~tL~~~~i~~g~~i~l 84 (95)
T 1v86_A 14 GKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSIT-GLPPAMQKVM--YKGLV--P--E-DKTLREIKVTSGAKIMV 84 (95)
T ss_dssp CCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHH-CSCSTTCCCB--SSSBC--C--S-SSBHHHHCCCTTEEEEE
T ss_pred CCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHH-CcCHHHeEEE--ECCee--C--C-cCcHHHCCCCCCCEEEE
Confidence 34578899996 58888999999999999999998863 5555555565 55553 4 3 3499999998544 443
No 307
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=93.45 E-value=0.39 Score=46.90 Aligned_cols=111 Identities=12% Similarity=0.161 Sum_probs=73.9
Q ss_pred CCCccCcccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCC
Q 013379 158 RPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKL 237 (444)
Q Consensus 158 ~pp~~~~~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~ 237 (444)
.|....+-..++.... ....+.++|++.+++|..|+.+...+ ..+..-++..+.|..++.+..+...+++.|++
T Consensus 116 ~p~v~~~~~~~~~~~~---~~~~~~~~v~F~~~~~~~~~~~~~~~---~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi 189 (361)
T 3uem_A 116 LPLVIEFTEQTAPKIF---GGEIKTHILLFLPKSVSDYDGKLSNF---KTAAESFKGKILFIFIDSDHTDNQRILEFFGL 189 (361)
T ss_dssp SCSEEECSTTTHHHHH---SCSCCEEEEEECCSSSSSHHHHHHHH---HHHHGGGTTTCEEEEECTTSGGGHHHHHHTTC
T ss_pred CCcceecCcccHHHHh---cCCCCcEEEEEEeCCchhHHHHHHHH---HHHHHHccCceEEEEecCChHHHHHHHHHcCC
Confidence 4444444455665332 23456778889999999998874211 13333344567777777776678889999999
Q ss_pred CC--CcEEEEEeCCCCeeeEEEe---CCCChHHHHHHHHhhhhc
Q 013379 238 DS--IPVVLVVDPITGQKMRSWC---GMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 238 ~~--~P~l~ii~p~tg~~v~~~~---G~~~~~~~l~~L~~~l~~ 276 (444)
.. +|.+.++... ..+.... |..+++.+...+..+++.
T Consensus 190 ~~~~~P~~~~~~~~--~~~~ky~~~~~~~~~~~l~~fi~~~l~g 231 (361)
T 3uem_A 190 KKEECPAVRLITLE--EEMTKYKPESEELTAERITEFCHRFLEG 231 (361)
T ss_dssp CTTTCSEEEEEECC----CCEECCSSCCCCHHHHHHHHHHHHTT
T ss_pred CccCCccEEEEEcC--CcccccCCCccccCHHHHHHHHHHHhcC
Confidence 87 9999999852 2222332 678999998888888763
No 308
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=93.45 E-value=0.26 Score=38.44 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=54.6
Q ss_pred eEEEEECCCCceEEEE--eCCCCchHHHHHHH-HhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCC--CCceEEE
Q 013379 367 CRVGVRLPDGRRMQRN--FLRTDPIQLLWSYC-YSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL--ANAMISV 441 (444)
Q Consensus 367 ~~i~iRlP~G~r~~rr--F~~~~~l~~l~~fv-~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL--~~~~v~v 441 (444)
.+|-||..+|+++.-. +..++||..|-.-| .. ..+.+...-+|+.. ++. | +.+.||.++|+ .+++|.|
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~-~~gip~~~QrLi~~--Gk~--L--~D~~tL~~y~I~~~~stl~v 74 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISE-EKASHISEIKLLLK--GKV--L--HDNLFLSDLKVTPANSTITV 74 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHT-TSCSSSTTEEEEET--TEE--C--CTTCBHHHHCCCGGGCEEEE
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHH-hcCCChHHEEEEEC--CEE--C--cCcCCHHHcCCCCCCCEEEE
Confidence 5789999999977765 55999999999999 55 46777788888853 553 5 45789999999 3677776
Q ss_pred Ee
Q 013379 442 TW 443 (444)
Q Consensus 442 ~~ 443 (444)
.+
T Consensus 75 ~~ 76 (87)
T 2lxa_A 75 MI 76 (87)
T ss_dssp EE
T ss_pred Ec
Confidence 54
No 309
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=93.27 E-value=0.35 Score=41.02 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=55.6
Q ss_pred ceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 366 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 366 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
...|.|+..+|+.+...+..++||.+|-.-+.... +.+.....|+. .++. | +.+.||.++|+. +++|.+.
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gi~~~~qrL~~--~g~~--L--~d~~tL~~~~i~~~~~i~l~ 146 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHLV 146 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEE--TTEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHh-CcChhhEEEEE--CCEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence 47899999999999999999999999999998764 66677788874 3553 4 457899999998 4555543
No 310
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=93.27 E-value=0.39 Score=39.33 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=56.5
Q ss_pred CceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 365 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
+..+|.|+..+|+.+.-.+..++||.+|-.-|.... +.+....+|+.. .+. | +.+.||.++|+.+ ++|.|.
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~ygI~~gstI~l~ 79 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKE-GIPPDQQRLIWA--GKQ--L--EDGRTLSDYNIQRESTLHLV 79 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTCBTTTTTCCSSCEEEEE
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHH-CcChHHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence 467999999999999999999999999999998864 666677778754 443 4 4578999999984 556543
No 311
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=93.25 E-value=0.44 Score=39.83 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=52.9
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcC-----CC--CCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLE-----GS--EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN 436 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~-----~~--~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~ 436 (444)
...+.|.||+.+|+++.-.+..++||.+|-+-|...++ +. .....+|+.. +|. | +.+.||.++|+..
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~--GK~--L--eD~~TL~~y~I~~ 88 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ--GRF--L--HGNVTLGALKLPF 88 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESS--SSE--E--ESSCBTGGGCCCT
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEEC--CcC--C--CCCCcHHHcCCCC
Confidence 45689999999999999999999999999999987432 22 2456777765 553 5 4578999999973
No 312
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=93.25 E-value=0.28 Score=43.00 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=56.3
Q ss_pred CCCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 363 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 363 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
.+...+|.||..+|+.+.-+...++||.+|-.-|.... +.+...-+|+.. .+. | +.+.||.++|+.+ ++|.+
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gip~~~QrL~~~--g~~--L--~d~~tL~~~~i~~~~~l~l 89 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHL 89 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTCBTGGGTCCTTCEEEE
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CcChHHEEEEEC--Ccc--c--cccCCHhHcCCcccceeee
Confidence 35678999999999999999999999999999998863 666667777753 443 4 4578999999984 55654
Q ss_pred E
Q 013379 442 T 442 (444)
Q Consensus 442 ~ 442 (444)
.
T Consensus 90 ~ 90 (172)
T 3u30_A 90 V 90 (172)
T ss_dssp E
T ss_pred e
Confidence 3
No 313
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=93.22 E-value=0.11 Score=40.35 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=36.7
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHc-CCCHHHHHHHHhcCCCC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQAT-SWKLDEAIQLFYVGNES 53 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~-~w~le~Av~~~~~~~~~ 53 (444)
+++|.+.+++ |-+...|++.|..+ |||++.|++-.|++.+.
T Consensus 30 e~~v~~L~~M--GF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d 71 (84)
T 1vek_A 30 EEIVAQLVSM--GFSQLHCQKAAINTSNAGVEEAMNWLLSHMDD 71 (84)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 5689999999 99999999999998 59999999999997554
No 314
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=93.21 E-value=0.23 Score=42.81 Aligned_cols=42 Identities=12% Similarity=0.034 Sum_probs=28.8
Q ss_pred HHHHHcCCCC------CcEEEEEeCCCCeeeEEEeCC-----CChHHHHHHHHh
Q 013379 230 KVCTYYKLDS------IPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLVP 272 (444)
Q Consensus 230 ~~~~~y~~~~------~P~l~ii~p~tg~~v~~~~G~-----~~~~~~l~~L~~ 272 (444)
.++..|++.. .|.++|||+ .|.++..+.+. .+.+++++.|.+
T Consensus 113 ~~~~~~gv~~~~~g~~~p~~~liD~-~G~i~~~~~~~~~~~~~~~~~il~~l~~ 165 (166)
T 3p7x_A 113 SFGENYGVVMEELRLLARAVFVLDA-DNKVVYKEIVSEGTDFPDFDAALAAYKN 165 (166)
T ss_dssp HHHHHHTCEETTTTEECCEEEEECT-TCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred HHHHHhCCccccCCceeeEEEEECC-CCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence 5566677653 799999997 68888775432 345777776653
No 315
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=93.16 E-value=0.016 Score=54.66 Aligned_cols=40 Identities=25% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (444)
+.+|.+|+.. ||.+.+-|..+|+.+|||++.|+..|.+..
T Consensus 199 ~~~v~~~~~~-T~mn~~~s~~cL~~~~Wd~~~A~~~F~~l~ 238 (250)
T 1jkg_B 199 QEMLQAFSTQ-SGMNLEWSQKCLQDNNWDYTRSAQAFTHLK 238 (250)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4589999999 999999999999999999999999997743
No 316
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.03 E-value=0.54 Score=36.56 Aligned_cols=70 Identities=13% Similarity=0.080 Sum_probs=53.1
Q ss_pred CceEEEEECCCCceEEEEeCCC-----CchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ce
Q 013379 365 LLCRVGVRLPDGRRMQRNFLRT-----DPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AM 438 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~rrF~~~-----~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~ 438 (444)
...+|.|+.. |+.+...+..+ +||.+|-.-|... .+.+...-+|+.. ++. | .|.++||.++|+.+ ..
T Consensus 6 ~~~~v~Vk~~-~~~~~i~v~~~~~~~~~TV~~LK~~i~~~-~gip~~~qrL~~~--Gk~--L-~D~~~~L~~~~i~~g~~ 78 (92)
T 1wxv_A 6 SGLTVTVTHS-NEKHDLHVTSQQGSSEPVVQDLAQVVEEV-IGVPQSFQKLIFK--GKS--L-KEMETPLSALGIQDGCR 78 (92)
T ss_dssp SSEEEEEECS-SSEEEEEECCCSSSSSCBHHHHHHHHHHH-TCCCTTTCEEEET--TEE--E-CCSSSBHHHHTCCSSEE
T ss_pred CeEEEEEEEC-CEEEEEEECCCcCcccCcHHHHHHHHHHH-HCcCHHHEEEEEC--Cee--c-CCCcccHHHCCCCCCCE
Confidence 4688999984 77888899985 9999999999875 4666667777743 443 4 35578999999985 44
Q ss_pred EEE
Q 013379 439 ISV 441 (444)
Q Consensus 439 v~v 441 (444)
|.|
T Consensus 79 i~l 81 (92)
T 1wxv_A 79 VML 81 (92)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 317
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=92.98 E-value=0.66 Score=36.42 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=54.5
Q ss_pred CceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 365 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
..++|.|+..+|+.+..+...+++++.|++-.... .+.+...++|+-. ++. + ..+.|.+++++.. ..|-|.
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~-~gi~~~~~rf~Fd--G~~--l--~~~~Tp~dl~medgD~Idv~ 75 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-QGLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVF 75 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHH-TTCCSTTEEEEET--TEE--C--CTTCCTTTTTCCTTEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-hCCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 46789999999999999999999999999987664 3555667777654 443 3 5678999999984 545443
No 318
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=92.86 E-value=0.6 Score=36.15 Aligned_cols=75 Identities=16% Similarity=0.116 Sum_probs=49.5
Q ss_pred EEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCCh
Q 013379 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQP 263 (444)
Q Consensus 184 lVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~ 263 (444)
++.+..++|..|..+. .+.+-+...+ +..+|++. ...++..|++. .|.+.+ .+|+.+. |..++
T Consensus 3 vv~f~a~~C~~C~~~~-------~~L~~~~~~~-~~~vdid~--~~~l~~~~g~~-vPtl~~---~~G~~v~---g~~~~ 65 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAV-------EALAQARAGA-FFSVFIDD--DAALESAYGLR-VPVLRD---PMGRELD---WPFDA 65 (87)
T ss_dssp EEEEECSSCHHHHHHH-------HHHHHTTCCC-EEEEECTT--CHHHHHHHTTT-CSEEEC---TTCCEEE---SCCCH
T ss_pred EEEEECCCCchHHHHH-------HHHHHHHHhh-eEEEECCC--CHHHHHHhCCC-cCeEEE---ECCEEEe---CCCCH
Confidence 5667788999999873 2223333332 23456654 23477789998 999887 3687663 88888
Q ss_pred HHHHHHHHhhhh
Q 013379 264 ESLLEDLVPFMD 275 (444)
Q Consensus 264 ~~~l~~L~~~l~ 275 (444)
+.+...|...+.
T Consensus 66 ~~L~~~l~~~~~ 77 (87)
T 1ttz_A 66 PRLRAWLDAAPH 77 (87)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHH
Confidence 888887776654
No 319
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=92.84 E-value=1.5 Score=37.59 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=24.5
Q ss_pred CcEEEEEeCCCCeeeEEEeC-----CCChHHHHHHHHhh
Q 013379 240 IPVVLVVDPITGQKMRSWCG-----MVQPESLLEDLVPF 273 (444)
Q Consensus 240 ~P~l~ii~p~tg~~v~~~~G-----~~~~~~~l~~L~~~ 273 (444)
.|.++|||+ .|.++..+.| ..+++++++.|.+.
T Consensus 133 ~p~~~liD~-~G~i~~~~~~~~~~~~~~~~~ll~~l~~l 170 (171)
T 2yzh_A 133 ARAVFIIDK-EGKVAYVQLVPEITEEPNYDEVVNKVKEL 170 (171)
T ss_dssp CCEEEEECT-TSBEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred eeEEEEEcC-CCeEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence 589999996 6888887764 24567888877653
No 320
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=92.83 E-value=0.78 Score=37.12 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=53.3
Q ss_pred CCCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 363 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 363 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
.+..+.|.|+- +|+.+..+...+++|+.|++-+.... +.....++|+-. ++. + ..+.|.+++++.. ..|-|
T Consensus 28 ~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~-gi~~~~~rF~Fd--G~r--l--~~~~Tp~dl~medgD~Idv 99 (106)
T 2eke_C 28 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQ-GKEMDSLRFLYD--GIR--I--QADQTPEDLDMEDNDIIEA 99 (106)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTEEEEE
T ss_pred CCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHh-CCCcccEEEEEC--CeE--c--CCCCCHHHcCCCCCCEEEE
Confidence 34678899998 99999999999999999999866543 555566666653 443 3 5678999999985 44443
No 321
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=92.81 E-value=0.39 Score=40.72 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=53.4
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
+|.||.++|+.+..++..++||.+|-.-|.... +.+.....|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gip~~~q~L~~~--g~~--L--~d~~tL~~~~i~~~~~l~l~ 70 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHH-CcChHHeEEEEC--CeE--C--cCcccHHHhccCCCCeeEEE
Confidence 688999999999999999999999999998764 556666777753 443 4 457899999998 4556543
No 322
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=92.80 E-value=0.37 Score=38.17 Aligned_cols=76 Identities=8% Similarity=0.022 Sum_probs=56.6
Q ss_pred CCceEEEEECCCCc--eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcc-cCCCCcCCChhhcCCCC-ceE
Q 013379 364 SLLCRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATK-SLDYDSKLTFEDSGLAN-AMI 439 (444)
Q Consensus 364 ~~~~~i~iRlP~G~--r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~-~l~~~~~~Tl~e~gL~~-~~v 439 (444)
++.++|.|+.++++ .++++|..++||..|-.-|... .|.+...-+|+-..+.+.. .+ .+.+.||.+.|+.+ ++|
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~-~GiP~~~QrL~~~~~g~~~~~L-~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEIL-TGGCAGTMKVQVFKGDTCVSTM-DNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHH-HCSCTTTEEEEEEETTEEEEEC-CCTTSBHHHHCCSSSCEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHH-HCcCHHHeEEEEecCCccccee-CCCCCCHhHCCcCCCCEE
Confidence 56889999998885 7999999999999999999886 4666677777764333210 12 35689999999985 455
Q ss_pred EE
Q 013379 440 SV 441 (444)
Q Consensus 440 ~v 441 (444)
.|
T Consensus 91 hl 92 (95)
T 2kjr_A 91 HV 92 (95)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 323
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=92.78 E-value=0.6 Score=36.88 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=54.5
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
+..++|.|+-.+|+.+..+...+++++.|++-+.... +.+...++|+-. .+. + +.+.|.+++++. ...|-|.
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~-gi~~~~~rf~Fd--G~~--l--~~~~Tp~dl~medgD~Idv~ 77 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVF 77 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTCEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHh-CCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence 3568899999999999999999999999999876653 555667777654 443 4 567899999998 4555443
No 324
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.73 E-value=0.57 Score=36.08 Aligned_cols=69 Identities=14% Similarity=0.069 Sum_probs=57.8
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN 436 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~ 436 (444)
+.++|++|-++--...+-|-...-+|+.|+--|-.+ .+.++..|.|....-... ..|.++||.|+||.-
T Consensus 8 E~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~K-cefdp~~~~Ll~d~~~~e---~LdLskSLndlgirE 76 (91)
T 2daj_A 8 EKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSK-CEFDPLHTLLLKDYQSQE---PLDLTKSLNDLGLRE 76 (91)
T ss_dssp CSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHH-TTCCTTSEEEESCSSCCC---BCCTTSCHHHHTCSE
T ss_pred ccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhc-ccCChhhEEEecCCCCCc---ccchhcchhhhhhhh
Confidence 468999999999999999999999999999987665 466788999988654442 458999999999973
No 325
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.59 E-value=0.63 Score=36.30 Aligned_cols=71 Identities=14% Similarity=0.046 Sum_probs=52.5
Q ss_pred CceEEEEECCCCc--eEEEEeCCCCchHHHHHHHHhhcC-CCCCcCeEEEcCCCCCcccCCCCcCCChhhc--CCCC-ce
Q 013379 365 LLCRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLE-GSEMKPFRLTHAIPGATKSLDYDSKLTFEDS--GLAN-AM 438 (444)
Q Consensus 365 ~~~~i~iRlP~G~--r~~rrF~~~~~l~~l~~fv~~~~~-~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~--gL~~-~~ 438 (444)
...+|.||.++|+ .+.-....++||.+|-.-|....+ +.+...-+|+.. .+. | +.+.||.++ |+.+ ++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~--Gk~--L--~D~~tL~~~~~~i~~~~~ 79 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS--GKL--L--LDHQCLRDLLPKQEKRHV 79 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET--TEE--C--CSSSCHHHHSCSSSCSEE
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC--CEE--C--cCcCCHHHHhcCCCCCCE
Confidence 4589999999998 455556699999999999988642 556667778753 553 4 346899999 9985 44
Q ss_pred EEE
Q 013379 439 ISV 441 (444)
Q Consensus 439 v~v 441 (444)
|.+
T Consensus 80 i~l 82 (93)
T 1wgd_A 80 LHL 82 (93)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 326
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=92.58 E-value=0.38 Score=44.63 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=55.4
Q ss_pred cCCeEEEEEeC-CCchhhHHHHhhccCChhHHHHH----hcCEEEEEeecCChhH-------------------------
Q 013379 179 QDKWLLVNLQS-TKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSEG------------------------- 228 (444)
Q Consensus 179 ~~K~LlVyl~~-~~~~~~~~f~rdv~~~~~V~~~l----~~~fV~w~~~~~s~eg------------------------- 228 (444)
.+||+||++.. .+|..|..-. +.+.++. ..++.+++++.++.+.
T Consensus 76 ~Gk~vvL~F~~~~~cp~C~~el------~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~ 149 (240)
T 3qpm_A 76 RGKYLVFFFYPLDFTFVCPTEI------IAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDL 149 (240)
T ss_dssp TTSEEEEEECSCTTSSHHHHHH------HHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECT
T ss_pred CCCEEEEEEECCCCCCchHHHH------HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCc
Confidence 46888888887 7777776422 2333332 2467777777776543
Q ss_pred -HHHHHHcCCC------CCcEEEEEeCCCCeeeEEEeCCC----ChHHHHHHHHh
Q 013379 229 -KKVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVP 272 (444)
Q Consensus 229 -~~~~~~y~~~------~~P~l~ii~p~tg~~v~~~~G~~----~~~~~l~~L~~ 272 (444)
..++..|++. .+|.++|||+ .|.++.++.|.. +.++++..|..
T Consensus 150 ~~~v~~~ygv~~~~~g~~~p~~flID~-~G~I~~~~~~~~~~~~~~~eil~~l~~ 203 (240)
T 3qpm_A 150 THQISKDYGVYLEDQGHTLRGLFIIDE-KGVLRQITMNDLPVGRSVDETLRLVQA 203 (240)
T ss_dssp TSHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred hHHHHHHhCCccccCCCccceEEEEcC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 1344556664 5799999997 698887766532 45666666554
No 327
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=92.48 E-value=0.95 Score=37.82 Aligned_cols=67 Identities=21% Similarity=0.260 Sum_probs=51.5
Q ss_pred CceEEEEECCCCceE-EEEeCCCCchHHHHHHHHhhcC-C---CCC--cCeEEEcCCCCCcccCCCCcCCChhhcCCCCc
Q 013379 365 LLCRVGVRLPDGRRM-QRNFLRTDPIQLLWSYCYSQLE-G---SEM--KPFRLTHAIPGATKSLDYDSKLTFEDSGLANA 437 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~-~rrF~~~~~l~~l~~fv~~~~~-~---~~~--~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~ 437 (444)
+...|.||+.+|+.+ .-.|..++||..|-+-|...++ + .+. ..-+|+.. +|. | +.+.||++.++...
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~--GK~--L--eD~~TLsdy~I~~~ 88 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA--GKV--L--ENSKTVKDYRSPVS 88 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET--TEE--C--CTTSBGGGGSCCTT
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEEC--CeE--C--cCCCcHHHcCCCcC
Confidence 578999999999888 6899999999999999977543 2 222 34567664 453 4 56899999999854
No 328
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=92.26 E-value=1.1 Score=33.94 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=52.6
Q ss_pred CceEEEEECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCceEE
Q 013379 365 LLCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMIS 440 (444)
Q Consensus 365 ~~~~i~iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v~ 440 (444)
..+.|.|+..+|+ .+..+...+++++.|++-..... +.....++|+-. ++. + ..+.|.+++++....++
T Consensus 6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~-gi~~~~~rf~fd--G~~--l--~~~~Tp~~l~medgD~I 75 (79)
T 3a4r_A 6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAM-GLSGHKLSFFFD--GTK--L--SGKELPADLGLESGDLI 75 (79)
T ss_dssp CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHH-TCTTCCCEEEET--TEE--C--CSCCCHHHHTCCTTCEE
T ss_pred CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHh-CCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEE
Confidence 5689999999996 89999999999999999866553 545556666653 432 3 56789999999855544
No 329
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=92.24 E-value=1.1 Score=38.76 Aligned_cols=35 Identities=17% Similarity=0.422 Sum_probs=26.7
Q ss_pred CCcEEEEEeCCCCeeeEEEeCC--CChHHHHHHHHhhh
Q 013379 239 SIPVVLVVDPITGQKMRSWCGM--VQPESLLEDLVPFM 274 (444)
Q Consensus 239 ~~P~l~ii~p~tg~~v~~~~G~--~~~~~~l~~L~~~l 274 (444)
+-|.++|||+ .|.++..+.|. .+.+++++.|...+
T Consensus 133 H~~~~~liD~-~G~i~~~~~g~~~~~~~~l~~~ik~Ll 169 (170)
T 4hde_A 133 HGTSFYLIDQ-NGKVMKKYSGISNTPYEDIIRDMKRLA 169 (170)
T ss_dssp CCCEEEEECT-TSCEEEEEESSSSCCHHHHHHHHHHHH
T ss_pred eeeEEEEEcC-CCeEEEEECCCCCCCHHHHHHHHHHHh
Confidence 4578999997 69998888884 35678888776544
No 330
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=92.21 E-value=1 Score=38.51 Aligned_cols=42 Identities=14% Similarity=-0.018 Sum_probs=28.5
Q ss_pred HHHHHcCCC----C--CcEEEEEeCCCCeeeEEEeCC-----CChHHHHHHHHh
Q 013379 230 KVCTYYKLD----S--IPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLVP 272 (444)
Q Consensus 230 ~~~~~y~~~----~--~P~l~ii~p~tg~~v~~~~G~-----~~~~~~l~~L~~ 272 (444)
.++..|++. . .|..+|||+ .|.++..+.|. .+.+++++.|.+
T Consensus 110 ~~~~~~gv~~~~~g~~~p~~~liD~-~G~i~~~~~g~~~~~~~~~~~~l~~l~~ 162 (163)
T 1psq_A 110 SFGRDYALLINEWHLLARAVFVLDT-DNTIRYVEYVDNINSEPNFEAAIAAAKA 162 (163)
T ss_dssp HHHHHHTCBCTTTCSBCCEEEEECT-TCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred HHHHHhCCccccCCceEEEEEEEcC-CCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence 355566664 2 399999996 69988888763 234777776653
No 331
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=92.20 E-value=0.5 Score=36.38 Aligned_cols=68 Identities=13% Similarity=0.065 Sum_probs=49.6
Q ss_pred ceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 366 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 366 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
...+. +..+|+.+.-.+..++||.+|-.-|.... +.+....+|+. -++. | +.+.||.++|+.+ ++|.|
T Consensus 12 ~~~~~-~~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrL~~--~Gk~--L--~D~~tL~~~gi~~g~~l~l 80 (85)
T 2kd0_A 12 TIKLT-VKFGGKSIPLSVSPDCTVKDLKSQLQPIT-NVLPRGQKLIF--KGKV--L--VETSTLKQSDVGSGAKLML 80 (85)
T ss_dssp CEEEE-EEETTEEEEEEECTTSBHHHHHHHHHHHH-CCCTTTCEEEE--TTEE--C--CTTCBTTTTTCCTTEEEEE
T ss_pred cEEEE-EEECCEEEEEEECCCCcHHHHHHHHHHHH-CcChHHEEEEE--CCeE--C--CCcCCHHHCCCCCCCEEEE
Confidence 34444 44478888899999999999999998764 55666777874 3443 4 4578999999985 44544
No 332
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=92.20 E-value=1 Score=33.39 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=51.4
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCceEE
Q 013379 367 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMIS 440 (444)
Q Consensus 367 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v~ 440 (444)
++|.|+-.+|+.+..+...+++++.|++-..... +.+...++|+-. ++. + ..+.|.+++|+..+.++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~-gi~~~~~rf~fd--G~~--l--~~~~Tp~~l~medgD~I 68 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTI 68 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHH-TCCTTTCEEEET--TEE--C--CTTCCTTTTTCCTTEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHh-CCCcceEEEEEC--CEE--c--CCCCCHHHcCCCCCCEE
Confidence 5788999999999999999999999999876543 555566666654 443 3 56789999999855443
No 333
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=92.10 E-value=0.88 Score=37.07 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=54.2
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
+..+.|.|+..+|+.+..+...+++|+.|++-+.... +.+...++|+-. .+. + ..+.|.+++++.. .+|-|
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~-gi~~~~~rfiFd--G~~--L--~~~~Tp~dl~mEDgD~Idv 95 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQ-GISRNSVRFLFD--GTP--I--DETKTPEELGMEDDDVIDA 95 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHH-TCCSSSCEEESS--SCB--C--CSSSHHHHHHCSSEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHh-CCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEE
Confidence 4578999999999999999999999999998866543 555566666653 443 3 5678999999985 44433
No 334
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=92.02 E-value=0.53 Score=36.87 Aligned_cols=69 Identities=16% Similarity=0.097 Sum_probs=51.6
Q ss_pred CceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEE
Q 013379 365 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT 442 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~ 442 (444)
...+|.||. |+.+.-.+..++||.+|..-|.... +.+....+|+.. .+. | +.+.||.++|+. +++|.+.
T Consensus 18 ~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~y~I~~gstI~lv 87 (93)
T 2l7r_A 18 GSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLE-GIAPEDQVVLLA--GAP--L--EDEATLGQCGVEALTTLEVA 87 (93)
T ss_dssp --CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHH-TCCGGGCEEEET--TEE--C--CTTSBHHHHTCCSSCEEEEE
T ss_pred CcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHh-CcChhHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence 356788887 8888899999999999999998763 556667777753 443 4 457899999998 4556554
No 335
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.93 E-value=0.54 Score=37.92 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=53.0
Q ss_pred CceEEEEECCCC---ceEEEEeCC---------CCchHHHHHHHHhhcC-CCCCcC-eEEEcCCCCCcccCCCCcCCChh
Q 013379 365 LLCRVGVRLPDG---RRMQRNFLR---------TDPIQLLWSYCYSQLE-GSEMKP-FRLTHAIPGATKSLDYDSKLTFE 430 (444)
Q Consensus 365 ~~~~i~iRlP~G---~r~~rrF~~---------~~~l~~l~~fv~~~~~-~~~~~~-f~L~~~fPrr~~~l~~~~~~Tl~ 430 (444)
...+|.||..+| +.+.-.|.. ++||..|-..|....+ +.+... .+|+. -.+. | +.+.||.
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~--~Gk~--L--~D~~tL~ 84 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIY--CGRK--L--KDDQTLD 84 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEE--TTEE--C--CTTCBHH
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEE--CCeE--C--CCCCcHH
Confidence 357899999999 777778766 6999999999988642 556666 77764 3443 5 4568999
Q ss_pred hcCCCC-ceEEE
Q 013379 431 DSGLAN-AMISV 441 (444)
Q Consensus 431 e~gL~~-~~v~v 441 (444)
++|+.+ ++|.+
T Consensus 85 ~y~i~~g~~i~l 96 (107)
T 1x1m_A 85 FYGIQPGSTVHV 96 (107)
T ss_dssp HHTCCTTCEEEE
T ss_pred HcCCCCCCEEEE
Confidence 999985 55544
No 336
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=91.83 E-value=0.35 Score=45.43 Aligned_cols=91 Identities=11% Similarity=0.056 Sum_probs=53.9
Q ss_pred cCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhH--------------------------HHH
Q 013379 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KKV 231 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg--------------------------~~~ 231 (444)
.+||+||++. ..+|+.|..-...+ +....+|-..++.+++++.++.+. ..+
T Consensus 90 kGK~vvL~F~~a~~cp~C~~el~~l--~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~v 167 (254)
T 3tjj_A 90 RGKYLVFFFYPLDFTFVCPTEIIAF--GDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQI 167 (254)
T ss_dssp TTSEEEEEECSCTTCSSCCHHHHHH--HHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHH
T ss_pred CCCeEEEEEECCCCCCchHHHHHHH--HHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHH
Confidence 4688888888 67777775422111 011112222467777777776543 124
Q ss_pred HHHcCCC------CCcEEEEEeCCCCeeeEEEeCCC----ChHHHHHHHHh
Q 013379 232 CTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVP 272 (444)
Q Consensus 232 ~~~y~~~------~~P~l~ii~p~tg~~v~~~~G~~----~~~~~l~~L~~ 272 (444)
+..|++. .+|.++|||+ .|.++.++.|.. +.++++..|..
T Consensus 168 a~~ygv~~~~~g~~~p~tflID~-~G~I~~~~~~~~~~~~~~~eil~~L~a 217 (254)
T 3tjj_A 168 SKDYGVYLEDSGHTLRGLFIIDD-KGILRQITLNDLPVGRSVDETLRLVQA 217 (254)
T ss_dssp HHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred HHHcCCccccCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHh
Confidence 4555553 4799999997 688877766532 45666665543
No 337
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.69 E-value=0.67 Score=36.94 Aligned_cols=71 Identities=11% Similarity=0.080 Sum_probs=52.8
Q ss_pred CceEEEEECCCC----ceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceE
Q 013379 365 LLCRVGVRLPDG----RRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMI 439 (444)
Q Consensus 365 ~~~~i~iRlP~G----~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v 439 (444)
...+|.|+.++| +.+.-.+..++||.+|..-|... .+.+...-+|+.. .+. | .|..+||.++|+.+ ++|
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~-~gip~~~qrL~~~--gk~--L-~D~~~tL~~ygI~~g~~l 79 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELE-SGVPAEEAQIVYM--EQL--L-TDDHCSLGSYGLKDGDMV 79 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHH-TCCCGGGBCEEET--TEE--E-CCSSSBHHHHTCCTTEEE
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHH-HCcChHHeEEEEC--CEE--C-CCCcccHHHCCCCCCCEE
Confidence 457889999866 57788899999999999999886 4556666667653 343 4 34558999999985 445
Q ss_pred EE
Q 013379 440 SV 441 (444)
Q Consensus 440 ~v 441 (444)
.|
T Consensus 80 ~l 81 (102)
T 1v5o_A 80 VL 81 (102)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 338
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=91.47 E-value=0.21 Score=41.75 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=37.3
Q ss_pred HHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013379 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (444)
Q Consensus 10 ~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (444)
.++.|.+++++ |-+.+.|+..|..++||++.|++-.|++.+
T Consensus 78 ~e~~v~~L~~M--GF~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 78 PEEIVAIITSM--GFQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CHHHHHHHHHH--TSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 35689999999 999999999999999999999999998655
No 339
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=91.38 E-value=0.86 Score=41.27 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=57.7
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcC--EEEEEeecC-------------------------------
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN--FIFWQVYDD------------------------------- 224 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~--fV~w~~~~~------------------------------- 224 (444)
..+|..+|.+.+++|..|..+.. .+.++.+.+ +++..++..
T Consensus 84 ~~~k~~vv~F~d~~Cp~C~~~~~------~l~~l~~~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~ 157 (216)
T 1eej_A 84 PQEKHVITVFTDITCGYCHKLHE------QMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKS 157 (216)
T ss_dssp TTCCEEEEEEECTTCHHHHHHHT------THHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCC
T ss_pred CCCCEEEEEEECCCCHHHHHHHH------HHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCC
Confidence 35789999999999999999853 355555433 333322211
Q ss_pred ---------ChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 225 ---------TSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 225 ---------s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
-.+...++..|++..+|+++|.+ |. .+.|..++++|...|....
T Consensus 158 ~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~d---G~---~~~G~~~~~~l~~~l~~~~ 210 (216)
T 1eej_A 158 VAPASCDVDIADHYALGVQLGVSGTPAVVLSN---GT---LVPGYQPPKEMKEFLDEHQ 210 (216)
T ss_dssp CCCCCCSCCHHHHHHHHHHHTCCSSSEEECTT---SC---EEESCCCHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHcCCCccCEEEEcC---Ce---EecCCCCHHHHHHHHHHhh
Confidence 12335577889999999995433 54 4679889988888777654
No 340
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.36 E-value=0.3 Score=35.79 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=36.2
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCC-CHHHHHHHHhcCCCC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSW-KLDEAIQLFYVGNES 53 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w-~le~Av~~~~~~~~~ 53 (444)
++.|.+.+++ |-+.+.|++.|..+++ |+|.|++-.|++.+.
T Consensus 10 e~~v~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 10 PSLLEPLLAM--GFPVHTALKALAATGRKTAEEALAWLHDHCND 51 (64)
T ss_dssp CSSHHHHHHT--SCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 4478999999 9999999999999975 999999999987654
No 341
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=91.34 E-value=0.81 Score=42.34 Aligned_cols=46 Identities=9% Similarity=0.066 Sum_probs=33.2
Q ss_pred HHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 230 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 230 ~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
.+++.|++...|+++|.+. +|+. .++.|..+++.|...|......+
T Consensus 190 ~l~~~~gv~gtPt~vi~~~-~G~~-~~~~G~~~~~~L~~~l~~~~~~~ 235 (241)
T 1v58_A 190 KLMDDLGANVTPAIYYMSK-ENTL-QQAVGLPDQKTLNIIMGNKLQHH 235 (241)
T ss_dssp HHHHHHTCCSSCEEEEEET-TTEE-EEEESSCCHHHHHHHTTC-----
T ss_pred HHHHHcCCCCCCEEEEECC-CCCE-EEecCCCCHHHHHHHHHHHHHhh
Confidence 4567889999999999874 5754 57889999998888877766544
No 342
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=91.25 E-value=1.1 Score=38.40 Aligned_cols=71 Identities=23% Similarity=0.249 Sum_probs=56.2
Q ss_pred CceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 365 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
+...|.||.++|+.+.-.+..++||.+|-.-|... .+.+.....|+.. ++. | +.+.||.++|+.+ ++|.+.
T Consensus 80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-~gip~~~q~L~~~--G~~--L--~d~~tL~~y~i~~g~~l~l~ 151 (159)
T 3rt3_B 80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-EGVQDDLFWLTFE--GKP--L--EDQLPLGEYGLKPLSTVFMN 151 (159)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-HTCCGGGEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHH-HCCCHHHEEEEEC--Cee--c--CCCCCHHHcCCCCCCEEEEE
Confidence 34789999999999999999999999999999875 3666777888763 443 4 4478999999984 556543
No 343
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=90.50 E-value=0.04 Score=41.37 Aligned_cols=67 Identities=19% Similarity=0.256 Sum_probs=50.2
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
+|.||.++|+.+.-.+..++||.+|-.-+... .+.+.....|+. -.+. | +.+.||.++|+.+ ++|.+
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-~gi~~~~qrL~~--~gk~--L--~d~~tL~~~~i~~g~~i~l 69 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQ-QGVPADQLRVIF--AGKE--L--PNHLTVQNCDLEQQSIVHI 69 (76)
Confidence 57889999998888999999999999998875 355555666654 3443 4 4478999999985 44433
No 344
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=91.14 E-value=0.93 Score=38.96 Aligned_cols=69 Identities=16% Similarity=0.267 Sum_probs=54.2
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCC-CCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 367 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAI-PGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 367 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~f-Prr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
.+|.||..+|+.+.-.+..++||.+|-.-|.... +.+...-+|+. | .++. | +.+.||.+.|+.+ ++|.+
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gip~~~QrL~~-~~~g~~--L--~d~~tL~~y~i~~~~~l~l 73 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKI-GVHAFQQRLAV-HPSGVA--L--QDRVPLASQGLGPGSTVLL 73 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHH-CCCGGGEEEEE-ETTCCB--C--CTTSCGGGGTCCTTCEEEE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHh-CCCHHHEEEEE-cCCCCC--C--CCCCCHHHcCCCCCCEEEE
Confidence 5789999999999999999999999999998864 66666677772 3 3453 4 5688999999984 55544
No 345
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=90.77 E-value=0.43 Score=37.77 Aligned_cols=69 Identities=14% Similarity=0.238 Sum_probs=51.0
Q ss_pred CCceEEEEECCCCceE-EEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 364 SLLCRVGVRLPDGRRM-QRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~-~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
....+|.|+. .|+.+ .-.+..++||.+|-.-|... .+.+...-+|+ |.++. |. | + ||.++|+.+ ++|++
T Consensus 5 ~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~-tgip~~~QkLi--~~Gk~--L~-D-~-tL~~~~I~~g~~i~l 75 (96)
T 1wgg_A 5 SSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFAL-TGVQPARQKVM--VKGGT--LK-D-D-DWGNIKMKNGMTVLM 75 (96)
T ss_dssp CCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHH-TCCCTTTSCCE--ETTEE--CC-S-S-CCCSCCCCSSCEEEC
T ss_pred CcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHH-HCcCHHHeEEE--ECCcC--CC-C-C-CHHHCCCCCCCEEEE
Confidence 3567888886 67777 48899999999999999875 46666666666 55654 53 3 4 999999985 55543
No 346
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=90.60 E-value=1.4 Score=36.14 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=51.8
Q ss_pred CceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcC-----CC--CCcCeEEEcCCCCCcccCCCCcCCChhhcCCC
Q 013379 365 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLE-----GS--EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 435 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~-----~~--~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~ 435 (444)
..+.|.||+.+|+++.-.+..++||..|-+-|...++ +. .....+|+.. +|. | +.+.||.++++.
T Consensus 15 ~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~--GK~--L--eD~~TL~~y~I~ 86 (116)
T 1wgh_A 15 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ--GRF--L--HGNVTLGALKLP 86 (116)
T ss_dssp SSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEET--TEE--E--CSSCBTTTTTCC
T ss_pred CeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEEC--CcC--C--CCCCcHHHcCCC
Confidence 4689999999999999999999999999999987432 21 3556777765 553 4 557999999986
No 347
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=90.47 E-value=0.82 Score=39.18 Aligned_cols=19 Identities=16% Similarity=-0.062 Sum_probs=13.6
Q ss_pred CcEEEEEeCCCCeeeEEEeCC
Q 013379 240 IPVVLVVDPITGQKMRSWCGM 260 (444)
Q Consensus 240 ~P~l~ii~p~tg~~v~~~~G~ 260 (444)
.|+.+||+ .|.++..+.|.
T Consensus 128 ~p~~~vid--~G~i~~~~~~~ 146 (162)
T 1tp9_A 128 RRFALLVD--DLKVKAANIEG 146 (162)
T ss_dssp CCEEEEEE--TTEEEEEEECS
T ss_pred eeEEEEEE--CCEEEEEEeeC
Confidence 68888887 68777666554
No 348
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=90.25 E-value=0.22 Score=47.95 Aligned_cols=90 Identities=11% Similarity=0.051 Sum_probs=57.6
Q ss_pred cCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecC-C-hhHHHHHHHcCCCCCcEE
Q 013379 166 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD-T-SEGKKVCTYYKLDSIPVV 243 (444)
Q Consensus 166 ~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~-s-~eg~~~~~~y~~~~~P~l 243 (444)
.+..+.++....++.+ +|.+..++|..|+.+.. +|..- .+.+-...++.. . .+...+++.|++..+|++
T Consensus 185 s~~~~~~la~~l~~~~--vV~F~A~WC~~Ck~l~p-~le~l------A~~l~~Vd~d~~d~~~~~~~la~~~gI~~vPT~ 255 (291)
T 3kp9_A 185 PSPLAVGLAAHLRQIG--GTMYGAYWCPHCQDQKE-LFGAA------FDQVPYVECSPNGPGTPQAQECTEAGITSYPTW 255 (291)
T ss_dssp CCSTHHHHHHHHHHTT--CEEEECTTCHHHHHHHH-HHGGG------GGGSCEEESCSSCSSSCCCHHHHTTTCCSTTEE
T ss_pred CCHHHHHHHHHhCCCC--EEEEECCCCHHHHHHHH-HHHHH------HHHcCEEEEeecCchhhHHHHHHHcCCcccCeE
Confidence 3555555555555554 58889999999999842 33321 122223334422 2 235678999999999996
Q ss_pred EEEeCCCCeeeEEEeCCCChHHHHHHHH
Q 013379 244 LVVDPITGQKMRSWCGMVQPESLLEDLV 271 (444)
Q Consensus 244 ~ii~p~tg~~v~~~~G~~~~~~~l~~L~ 271 (444)
.+ +|+. +.|..+.+++.+.+.
T Consensus 256 ~i----~G~~---~~G~~~~~~L~~~l~ 276 (291)
T 3kp9_A 256 II----NGRT---YTGVRSLEALAVASG 276 (291)
T ss_dssp EE----TTEE---EESCCCHHHHHHHTC
T ss_pred EE----CCEE---ecCCCCHHHHHHHHC
Confidence 54 5763 789888887766553
No 349
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=90.10 E-value=0.86 Score=44.27 Aligned_cols=87 Identities=10% Similarity=0.195 Sum_probs=56.0
Q ss_pred cCCeEEEEEeC-CCchhhHHHHhhccCChhHHHHHh---cCEEEEEeecCChhHH-------------------HHHHHc
Q 013379 179 QDKWLLVNLQS-TKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGK-------------------KVCTYY 235 (444)
Q Consensus 179 ~~K~LlVyl~~-~~~~~~~~f~rdv~~~~~V~~~l~---~~fV~w~~~~~s~eg~-------------------~~~~~y 235 (444)
.+||++||++- ..++-|. .++.+|-+ +++.+++++.++.+.. .+++.|
T Consensus 23 ~Gk~vvl~F~p~~~tp~C~---------~e~~~~~~~~~~~~~v~gis~D~~~~~~~f~~~~~l~fp~l~D~~~~v~~~y 93 (322)
T 4eo3_A 23 YGKYTILFFFPKAGTSGST---------REAVEFSRENFEKAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEGILHEFF 93 (322)
T ss_dssp TTSEEEEEECSSTTSHHHH---------HHHHHHHHSCCTTEEEEEEESCCHHHHHHHHHHHTCCSEEEECTTCHHHHHT
T ss_pred CCCeEEEEEECCCCCCCCH---------HHHHHHHHHhhCCCEEEEEeCCCHHHHHHHHHhhCCceEEEEcCchHHHHhc
Confidence 46888888872 2333332 12233322 4577777777776552 345677
Q ss_pred CC----CCCcEEEEEeCCCCeeeEEEeCCC---ChHHHHHHHHhhhh
Q 013379 236 KL----DSIPVVLVVDPITGQKMRSWCGMV---QPESLLEDLVPFMD 275 (444)
Q Consensus 236 ~~----~~~P~l~ii~p~tg~~v~~~~G~~---~~~~~l~~L~~~l~ 275 (444)
++ ..+|..+|||+ .|.+...|.+.. .+++++..|.....
T Consensus 94 gv~~~~~~~r~tfiId~-~G~i~~~~~~v~~~~h~~~~l~~~~~~~~ 139 (322)
T 4eo3_A 94 NVLENGKTVRSTFLIDR-WGFVRKEWRRVKVEGHVQEVKEALDRLIE 139 (322)
T ss_dssp TCEETTEECCEEEEECT-TSBEEEEEESCCSTTHHHHHHHHHHHHHH
T ss_pred CCCCCCcCccEEEEECC-CCEEEEEEeCCCccccHHHHHHHHhhhch
Confidence 77 35789999997 799888888743 35777777777654
No 350
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=89.82 E-value=1.6 Score=40.21 Aligned_cols=90 Identities=8% Similarity=0.004 Sum_probs=52.8
Q ss_pred CeEEEEEe-CCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhH---------------------------HHHH
Q 013379 181 KWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG---------------------------KKVC 232 (444)
Q Consensus 181 K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg---------------------------~~~~ 232 (444)
+|++|+++ .++|+.|..-...+ +....+|-+.++-+++++.++.+. ..++
T Consensus 30 ~~vvL~f~pa~~cpvC~~el~~l--~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va 107 (233)
T 2v2g_A 30 SWGVLFSHPRDFTPVSTTELGRV--IQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELA 107 (233)
T ss_dssp SEEEEEECSCSSCHHHHHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHH
T ss_pred CeEEEEEECCCCCCCcHHHHHHH--HHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHH
Confidence 38888887 67777765432111 011112223467777777666442 1234
Q ss_pred HHcCCC------------CCcEEEEEeCCCCeeeEEEeCCC----ChHHHHHHHHhh
Q 013379 233 TYYKLD------------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPF 273 (444)
Q Consensus 233 ~~y~~~------------~~P~l~ii~p~tg~~v~~~~G~~----~~~~~l~~L~~~ 273 (444)
..|++. .+|.++|||| .|.++..+.|.. +.++++..|...
T Consensus 108 ~~ygv~~~~~~~~~g~~~~~p~~fiID~-~G~I~~~~~~~~~~gr~~~eilr~l~~L 163 (233)
T 2v2g_A 108 VKLGMVDPDERTSTGMPLTCRAVFIIGP-DKKLKLSILYPATTGRNFSEILRVIDSL 163 (233)
T ss_dssp HHTTCEEEEEECTTCCEEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HHhCCcCcccccCCCcccccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 455552 4789999997 688877775532 567777766654
No 351
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=89.68 E-value=1.7 Score=38.83 Aligned_cols=85 Identities=15% Similarity=0.067 Sum_probs=48.1
Q ss_pred cCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChhH---------------------HHHHHH
Q 013379 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEG---------------------KKVCTY 234 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~eg---------------------~~~~~~ 234 (444)
.+|+++|++. +.+|..|..-. +.+.++.+ .++.+++++.++.+. ..++..
T Consensus 77 ~Gk~vvl~F~~~~~c~~C~~e~------~~l~~l~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ 150 (200)
T 3zrd_A 77 AGKRKVLNIFPSIDTGVCAASV------RKFNQLAGELENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQA 150 (200)
T ss_dssp TTSEEEEEECSCCCCSCCCHHH------HHHHHHHHTSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHHH
T ss_pred CCCcEEEEEECCCCCchhHHHH------HHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHHH
Confidence 4677777776 45666554321 22333322 356666666555433 234555
Q ss_pred cCCC---------CCcEEEEEeCCCCeeeEEEeCC-----CChHHHHHHH
Q 013379 235 YKLD---------SIPVVLVVDPITGQKMRSWCGM-----VQPESLLEDL 270 (444)
Q Consensus 235 y~~~---------~~P~l~ii~p~tg~~v~~~~G~-----~~~~~~l~~L 270 (444)
|++. ..|.++|||+ .|.++.++.|. .+.+++++.|
T Consensus 151 ygv~~~~~~~~g~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~~~~l~~L 199 (200)
T 3zrd_A 151 YGVAITEGPLAGLTARAVVVLDG-QDNVIYSELVNEITTEPNYDAALAAL 199 (200)
T ss_dssp TTCEECSSTTTTSBCCEEEEECT-TSBEEEEEECSBTTSCCCHHHHHHHH
T ss_pred hCceeecccCCCccccEEEEECC-CCeEEEEEecCCcccCCCHHHHHHhh
Confidence 6653 2599999996 68888776542 2455555544
No 352
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.65 E-value=0.46 Score=35.14 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=38.4
Q ss_pred CcchHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013379 6 SANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (444)
Q Consensus 6 ~~~~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (444)
.....++.+.++.++=-..|.++-+..|++|+||++.||+..++..
T Consensus 14 ~~~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms 59 (67)
T 2dhy_A 14 RRLEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMN 59 (67)
T ss_dssp CCCCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 3344566788888886778999999999999999999999998753
No 353
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=89.61 E-value=0.92 Score=40.68 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=54.0
Q ss_pred ceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 366 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 366 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
...|.||..+|+.+.-.+..++||.+|-.-|.... +.+....+|+. -.+. | +.+.||.++|+.+ ++|.+
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~-gIp~~~QrLi~--~Gk~--L--~D~~tL~dygI~~gstI~L 174 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHL 174 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCCEEE--TTEE--C--CTTCBGGGGTCCTTCEEEE
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhcc-CCCHHHEEEEE--CCEE--C--CCCCCHHHCCCCCCCEEEE
Confidence 36899999999999999999999999999998764 55556666774 3543 4 3478999999984 55544
No 354
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=89.44 E-value=1.6 Score=38.16 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=53.7
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
+|.||..+|+.+.-....++||.+|-.-|.... +.+...-+|+.. ++. | +.+.||.++|+.+ ++|.+.
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk~--L--~D~~tL~~y~I~~gstI~Lv 70 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 70 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHH-CCCTTTEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHH-CcCHHHEEEEEC--Ccc--c--cCcCcHHHcCCCCCCEEEEE
Confidence 688999999999999999999999999998763 566677778764 342 4 4578999999984 555443
No 355
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=89.41 E-value=1.9 Score=39.36 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=58.2
Q ss_pred cCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhH--------------------------HHH
Q 013379 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KKV 231 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg--------------------------~~~ 231 (444)
.+||+++|++ .+.++-|..=... -++...+|-+.++.+++++.++... ..+
T Consensus 51 ~GK~vVL~FyP~d~TpvCt~E~~~--f~~~~~~f~~~g~~vigiS~Ds~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~v 128 (216)
T 3sbc_A 51 KGKYVVLAFIPLAFTFVSPTEIIA--FSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSL 128 (216)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHH--HHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHH
T ss_pred CCCeEEEEEEcCCCCCcCchhhhH--HHHhHHhhccCCceEEEeecCchhhHHHHHHHHHHhCCccCcccceEeCCCCHH
Confidence 4799999999 6667776542111 1223344445689999999988654 235
Q ss_pred HHHcCC------CCCcEEEEEeCCCCeeeEEEeCC----CChHHHHHHHHh
Q 013379 232 CTYYKL------DSIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVP 272 (444)
Q Consensus 232 ~~~y~~------~~~P~l~ii~p~tg~~v~~~~G~----~~~~~~l~~L~~ 272 (444)
++.|++ ..++.++|||| .|.+...+-.. -+.+++|..|..
T Consensus 129 ak~YGv~~~~~g~~~R~tFiID~-~G~Ir~~~v~~~~~grn~dEiLr~l~A 178 (216)
T 3sbc_A 129 SRDYGVLIEEEGVALRGLFIIDP-KGVIRHITINDLPVGRNVDEALRLVEA 178 (216)
T ss_dssp HHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred HHHcCCeeccCCceeeEEEEECC-CCeEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 667776 13688999998 57654443221 367888776654
No 356
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=89.36 E-value=0.46 Score=37.94 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=50.9
Q ss_pred CceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 365 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
-.++|.|+. +|+.+.-++..++||.+|-.-|.... +.+...-+|+.. ++. | +.+.||.++|+.+ ++|.+
T Consensus 27 m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk~--L--~D~~tL~~~gI~~g~tI~l 96 (101)
T 3m63_B 27 MSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKAN-GIPVANQRLIYS--GKI--L--KDDQTVESYHIQDGHSVHL 96 (101)
T ss_dssp --CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHH-SCCSTTCCEEET--TEE--C--CTTSBTTTTTCCTTEEEEE
T ss_pred cEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHH-CcChHHEEEEEC--CEE--C--CCcCcHHHCCCCCCCEEEE
Confidence 346788887 88888889999999999999998864 555556666653 342 4 4489999999985 45544
No 357
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=89.26 E-value=2.6 Score=36.13 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=30.4
Q ss_pred HHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 230 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 230 ~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
..+..+++..+|+++| +|+ .+.|..+.+.|...|...++
T Consensus 135 ~~a~~~gv~gtPt~~i----~g~---~~~G~~~~~~l~~~i~~~l~ 173 (175)
T 3gyk_A 135 ALAQKLGFNGTPSFVV----EDA---LVPGFVEQSQLQDAVDRARK 173 (175)
T ss_dssp HHHHHHTCCSSSEEEE----TTE---EECSCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCccCCEEEE----CCE---EeeCCCCHHHHHHHHHHHHh
Confidence 4567889999999876 454 56799999998888877654
No 358
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=89.02 E-value=1.9 Score=39.39 Aligned_cols=86 Identities=10% Similarity=0.011 Sum_probs=54.2
Q ss_pred cCCeEEEEEe-CCCchhhH-HHHhhccCChhHHHH----HhcCE-EEEEeecCChhH-H-------------------HH
Q 013379 179 QDKWLLVNLQ-STKEFSSH-MLNRDTWANEAVSQT----ISTNF-IFWQVYDDTSEG-K-------------------KV 231 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~-~f~rdv~~~~~V~~~----l~~~f-V~w~~~~~s~eg-~-------------------~~ 231 (444)
.+||++||+. .++|..|. .-. +.+.++ -..++ .+++++.++.+. . .+
T Consensus 32 ~gk~vvl~f~~a~~cp~C~~~e~------~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~ 105 (241)
T 1nm3_A 32 DNKTVIVFSLPGAFTPTCSSSHL------PRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEF 105 (241)
T ss_dssp TTSEEEEEEESCSSCHHHHHTHH------HHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHH
T ss_pred CCCeEEEEEeCCCCCCCCCHHHH------HHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHH
Confidence 5788999888 88888887 211 222222 23467 677777766543 1 23
Q ss_pred HHHcCCC-----------CCcEEEEEeCCCCeeeEEEeCC---------CChHHHHHHHHh
Q 013379 232 CTYYKLD-----------SIPVVLVVDPITGQKMRSWCGM---------VQPESLLEDLVP 272 (444)
Q Consensus 232 ~~~y~~~-----------~~P~l~ii~p~tg~~v~~~~G~---------~~~~~~l~~L~~ 272 (444)
+..|++. ..|+.+|| + .|.++..+.|. .++++++..|..
T Consensus 106 ~~~~gv~~~~~~~g~~~~~~p~t~li-~-~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~~ 164 (241)
T 1nm3_A 106 TEGMGMLVGKEDLGFGKRSWRYSMLV-K-NGVVEKMFIEPNEPGDPFKVSDADTMLKYLAP 164 (241)
T ss_dssp HHHTTCEEECTTTTCCEEECCEEEEE-E-TTEEEEEEECCSCSSCCCSSSSHHHHHHHHCT
T ss_pred HHHhCceeecccccCcccceeEEEEE-E-CCEEEEEEEeccCCCccceecCHHHHHHHhhh
Confidence 4455553 34888888 5 79988887774 356777776654
No 359
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=89.01 E-value=1.2 Score=34.64 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=51.7
Q ss_pred CceEEEEECCCCceEEE-EeCCCCchHHHHHHHHhhcCCCCCcCeEEEcC-CCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 365 LLCRVGVRLPDGRRMQR-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA-IPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~r-rF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~-fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
...+|.|+. .|+.+.- ....++||.+|-.-|... .+.+...-+|+-. |-.+. | +.+.||.++|+.+ ++|++
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~-~gip~~~QkLi~~k~~Gk~--L--~D~~~L~~~~i~~g~~l~l 79 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTL-TGVLPERQKLLGLKVKGKP--A--ENDVKLGALKLKPNTKIMM 79 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHH-TCCCTTTCEEESCEETTEE--C--CTTSBHHHHTCCTTEEEEE
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHH-HCcCHHHeEEEeeccCCcC--c--CCCCCHHHcCCCCCCEEEE
Confidence 457788887 7877777 778999999999999875 4666777778732 32332 4 4478999999985 44544
No 360
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=89.01 E-value=0.39 Score=39.73 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=34.9
Q ss_pred HHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013379 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (444)
Q Consensus 12 ~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (444)
+.|.+|+++ |-+.+.|+.-|..+|+|++.||+..|...
T Consensus 78 ~~v~~L~eM--GF~~~~a~~AL~~~~nd~erAlewL~~~~ 115 (118)
T 4ae4_A 78 QLMSKFKEM--GFELKDIKEVLLLHNNDQDNALEDLMARA 115 (118)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 368999999 99999999999999999999999998753
No 361
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=88.96 E-value=0.78 Score=45.50 Aligned_cols=69 Identities=7% Similarity=0.144 Sum_probs=54.4
Q ss_pred CceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhc--CCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceE
Q 013379 365 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL--EGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMI 439 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~--~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v 439 (444)
...+|.||..+|+.+.-.+..++||.+|...|.... .+......+|+. -+|. | +.++||.++|+.. +.|
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy--~GK~--L--~D~~tL~dygI~~gstI 77 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY--AGKI--L--SDDVPIRDYRIDEKNFV 77 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEES--SSSE--E--CSSSBTTTTCCCTTSCE
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEE--CCee--c--CCcCCHHHcCCCCCCEE
Confidence 467899999999999999999999999999998842 345566777774 4654 5 3478999999985 445
No 362
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=88.49 E-value=0.08 Score=43.55 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=35.7
Q ss_pred HHHHHhhcccccCC-CHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013379 11 QSMVSSFLEIAVGQ-TAETAVQFLQATSWKLDEAIQLFYVGNE 52 (444)
Q Consensus 11 ~~~i~~F~~itt~~-~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (444)
+-+|.|..+| ||. |+..=.+.|+++|+||..||..+-+.+.
T Consensus 19 Q~lLNQLrEI-TGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~ 60 (129)
T 2lva_A 19 QMLLNQLREI-TGIQDPSFLHEALKASNGDITQAVSLLTDERV 60 (129)
Confidence 4478999999 786 7999999999999999999999977543
No 363
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=88.77 E-value=1.4 Score=34.52 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=55.0
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEE
Q 013379 367 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 441 (444)
Q Consensus 367 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v 441 (444)
-.|-|..|+|+|.+-+...+.+|.+|.+=...++ +.+...|.|... ++. .|++..|.=.||. ++.|-+
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~-gl~~~~~~Lkh~--~k~----lDLSlpfRlsgLpnnAkLEL 78 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQ-DFNPSEYDLKFQ--RTV----LDLSLQWRFANLPNNAKLEM 78 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHT-TCCGGGCEEEET--TEE----ESSSCBHHHHCCCSSCEEEE
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHh-CCChhhCeEEeC--CEe----ccccceeEecCCCCCCEEEE
Confidence 3899999999999999999999999888755543 667889999976 332 3889999999998 455633
No 364
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=88.63 E-value=1.6 Score=35.05 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=48.3
Q ss_pred eEEEEECCCCceEEEEeC-CCCchHHHHHHHHhhcCCCCCcCeEEE-cCCC------CCcccCC--CCcCCChhhcCCCC
Q 013379 367 CRVGVRLPDGRRMQRNFL-RTDPIQLLWSYCYSQLEGSEMKPFRLT-HAIP------GATKSLD--YDSKLTFEDSGLAN 436 (444)
Q Consensus 367 ~~i~iRlP~G~r~~rrF~-~~~~l~~l~~fv~~~~~~~~~~~f~L~-~~fP------rr~~~l~--~~~~~Tl~e~gL~~ 436 (444)
..|+||-++|+. .-... .++||.+|..-|.... +.+.....|. .+.| .....+. .+.+.||.++||.+
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~-gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQL-QIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHS-CCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHh-CcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 579999999964 33566 8899999999998864 4455555553 2221 1000121 36689999999985
Q ss_pred -ceEEEE
Q 013379 437 -AMISVT 442 (444)
Q Consensus 437 -~~v~v~ 442 (444)
++|.|.
T Consensus 86 G~~L~l~ 92 (107)
T 1wf9_A 86 GSMVYLA 92 (107)
T ss_dssp TCEEECC
T ss_pred CCEEEEE
Confidence 445443
No 365
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=88.62 E-value=1.2 Score=38.11 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=21.4
Q ss_pred HHHHHHcCCCC---------CcEEEEEeCCCCeeeEEEeC
Q 013379 229 KKVCTYYKLDS---------IPVVLVVDPITGQKMRSWCG 259 (444)
Q Consensus 229 ~~~~~~y~~~~---------~P~l~ii~p~tg~~v~~~~G 259 (444)
..++..|++.. .|..+|||+ .|.++..+.|
T Consensus 110 ~~~~~~~gv~~~~~~~~g~~~p~~~liD~-~G~i~~~~~~ 148 (165)
T 1q98_A 110 HALHSQLGVDIQTGPLAGLTSRAVIVLDE-QNNVLHSQLV 148 (165)
T ss_dssp THHHHHTTCEECSSTTTTSBCCEEEEECT-TSBEEEEEEC
T ss_pred chHHHHhCceecccccCCccceeEEEEcC-CCEEEEEEeC
Confidence 34566676632 499999996 6888888765
No 366
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=88.27 E-value=0.8 Score=41.94 Aligned_cols=71 Identities=17% Similarity=0.106 Sum_probs=51.3
Q ss_pred ECCCC-ceEEEEeCCCCchHHHHHHHHhhcCCCCC-cCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEEEe
Q 013379 372 RLPDG-RRMQRNFLRTDPIQLLWSYCYSQLEGSEM-KPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW 443 (444)
Q Consensus 372 RlP~G-~r~~rrF~~~~~l~~l~~fv~~~~~~~~~-~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v~~ 443 (444)
+.++. ..++..|...+|+..|+..+...+ +.+. ..++|-.-+....+.+..+.++||+|++|. +..|+|+.
T Consensus 134 ~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~-~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~ 207 (217)
T 4a3p_A 134 ENGNMNNVVTRRFSKADTIDTIEKEIRKIF-SIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQ 207 (217)
T ss_dssp ETTEEEEEEEEEECTTSBHHHHHHHHHHHT-TCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEE
T ss_pred ecCCCCcceEEEEcccchHHHHHHHHHHHh-CCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEE
Confidence 34443 346799999999999999998864 4443 468887655444444556778999999998 56677764
No 367
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=88.18 E-value=1.8 Score=41.76 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=56.0
Q ss_pred CceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 365 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
+..+|.||..+|+.+.-.+..++||.+|-.-|.... +.+...-+|+.. .+. | +.+.||.++|+.+ ++|.|.
T Consensus 232 ~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~-GIp~~~QRLi~~--Gk~--L--~D~~TLsdygI~~gstL~Lv 303 (307)
T 3ai5_A 232 GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV 303 (307)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CcChHHEEEEeC--Cee--c--CCCCCHHHcCCCCCCEEEEE
Confidence 468999999999999999999999999999998763 556666777753 443 4 4578999999984 555543
No 368
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.92 E-value=1.6 Score=33.80 Aligned_cols=71 Identities=8% Similarity=-0.040 Sum_probs=50.6
Q ss_pred eEEEEECCCCceEE--E-EeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCce-EEE
Q 013379 367 CRVGVRLPDGRRMQ--R-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAM-ISV 441 (444)
Q Consensus 367 ~~i~iRlP~G~r~~--r-rF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~-v~v 441 (444)
..|-|+...|+... - ....++||.+|..-|....++.....-+|+-.+=++. | +.+.||.+.|+.+++ |.|
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~--L--~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKS--L--KDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCC--C--CTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcC--c--CCCCCHHHcCCCCCCEEEE
Confidence 56778888887643 4 7889999999999998743455555666765443443 4 457899999998644 444
No 369
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=87.70 E-value=1.6 Score=40.28 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=47.8
Q ss_pred EEEEeCCCCchHHHHHHHHhhcCCCCC-cCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 379 MQRNFLRTDPIQLLWSYCYSQLEGSEM-KPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 379 ~~rrF~~~~~l~~l~~fv~~~~~~~~~-~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
++.+|...+|+..|+..+...+ +.+. ..++|-.-+-...+.+..+.++||+|++|.. ..|+++
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~-~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE 218 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLF-NIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIE 218 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHT-TCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred EEEEecccCcHHHHHHHHHHHh-CCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEE
Confidence 5689999999999999998865 4444 4688887664444445567889999999994 556665
No 370
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=87.19 E-value=3.3 Score=33.89 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=52.5
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMI 439 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v 439 (444)
...++|.|+-.+|+.+..+...+++|+.|++...... +.....++|.-. ++. + ..+.|.+++|+.. ..|
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~-Gl~~~~irFlFD--G~r--I--~~~~TP~dL~MEDgD~I 107 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQ-GVPMNSLRFLFE--GQR--I--ADNHTPKELGMEEEDVI 107 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHH-TCCTTSEEEEET--TEE--C--CTTCCTTTTTCCTTCEE
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHh-CCChhhEEEEEC--CeE--C--CCCCCHHHcCCCCCCEE
Confidence 4588999999999999999999999999998765543 555666666654 432 3 5578999999985 444
No 371
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=86.87 E-value=0.89 Score=31.86 Aligned_cols=43 Identities=9% Similarity=0.053 Sum_probs=38.1
Q ss_pred chHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCCC
Q 013379 8 NDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGNE 52 (444)
Q Consensus 8 ~~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~~ 52 (444)
.+.++.|++.|++ |-|.+.|++-|..++.|++.|.+...+-..
T Consensus 5 ~p~e~~Ia~L~sm--Gfsr~da~~AL~ia~Ndv~~AtNiLlEf~~ 47 (56)
T 2juj_A 5 PQLSSEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREFVS 47 (56)
T ss_dssp HHHHHHHHHHHTT--TCCHHHHHHHHHHTTTCSHHHHHHHHHSCC
T ss_pred CCChHHHHHHHHc--CCCHHHHHHHHHHhcccHHHHHHHHHHHHc
Confidence 3457799999999 999999999999999999999999888643
No 372
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.84 E-value=3.7 Score=33.70 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=55.0
Q ss_pred CceEEEEE-CCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC-CceEEE
Q 013379 365 LLCRVGVR-LPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV 441 (444)
Q Consensus 365 ~~~~i~iR-lP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~-~~~v~v 441 (444)
..++|.|. .|+|.+++-.|..+.+|.+|-+-+.... +.+...-.|+.+ +|. | ..+.||.++|+. +.+|-+
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~-~iP~e~qrLIy~--GKi--L--KD~eTL~~~gIk~g~TIhL 85 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLL-GIPHSVLQIRYS--GKI--L--KNNETLVQHGVKPQEIVQV 85 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHH-TCCTTTEEEEET--TEE--E--CSSCCHHHHSCCSSCEEEE
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhh-CCChHHEEEEEC--CeE--c--CCcchHHHcCCCCCCEEEE
Confidence 35778887 8899999999999999999999998875 556667777665 554 5 447899999998 566633
No 373
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=86.63 E-value=2.9 Score=38.23 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=56.2
Q ss_pred cCCeEEEEEe-CCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhH--------------------------HHH
Q 013379 179 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KKV 231 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg--------------------------~~~ 231 (444)
.+||++||++ .+.++-|..=..+ -++...+|-+.++.+++++.++... ..+
T Consensus 55 ~GK~vVL~FyP~d~TpvCt~E~~~--f~~~~~eF~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~v 132 (219)
T 3tue_A 55 KGKWVVLFFYPLDFTFVCPTEVIA--FSDSVSRFNELNCEVLACSIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNI 132 (219)
T ss_dssp TTSEEEEEECSCTTCSSCCHHHHH--HHTTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHH
T ss_pred CCCEEEEEEecccCCCCCchhHhh--HHHHHhhhccCCcEEEEeeCCchhhHHHHhhhhHHhcCccccccccccCcccHH
Confidence 4799999999 4555554332111 1233445556789999999988654 224
Q ss_pred HHHcCC----C--CCcEEEEEeCCCCeeeEEEeCC----CChHHHHHHHHh
Q 013379 232 CTYYKL----D--SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVP 272 (444)
Q Consensus 232 ~~~y~~----~--~~P~l~ii~p~tg~~v~~~~G~----~~~~~~l~~L~~ 272 (444)
++.|++ . .+-.++|||| .|.+...+... -..+++|..|..
T Consensus 133 a~~yGv~~~~~g~~~R~tFiIDp-~g~Ir~~~~~~~~~gr~~~EvLr~l~a 182 (219)
T 3tue_A 133 ARSYGVLEESQGVAYRGLFIIDP-HGMLRQITVNDMPVGRSVEEVLRLLEA 182 (219)
T ss_dssp HHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred HHHcCCcccCCCeeEEEEEEECC-CCeEEEEEEecCCCCCCHHHHHHHHHH
Confidence 666776 1 2457889998 57665554221 267787776653
No 374
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=86.20 E-value=3.4 Score=37.99 Aligned_cols=85 Identities=13% Similarity=0.130 Sum_probs=54.0
Q ss_pred HcCCeEEEEEeCCC--chhhHHHHhhccCChhHHHHHhc--C------EEEEEeecCChhHHHHHHHcCCCCCcEEEEEe
Q 013379 178 VQDKWLLVNLQSTK--EFSSHMLNRDTWANEAVSQTIST--N------FIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (444)
Q Consensus 178 ~~~K~LlVyl~~~~--~~~~~~f~rdv~~~~~V~~~l~~--~------fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~ 247 (444)
+-.++++|.+..++ |..|..+. +.+.++-+. . ..|..++.+ +...++..|++..+|++.|+
T Consensus 23 ~~~~pv~v~~~~~~~~c~~c~~~~------~~l~ela~~~~~~~~~~~v~~~~vd~d--~~~~~~~~~gv~~~Pt~~i~- 93 (243)
T 2hls_A 23 EMVNPVEVHVFLSKSGCETCEDTL------RLMKLFEEESPTRNGGKLLKLNVYYRE--SDSDKFSEFKVERVPTVAFL- 93 (243)
T ss_dssp TCCSCEEEEEEECSSSCTTHHHHH------HHHHHHHHHSCEETTEESEEEEEEETT--TTHHHHHHTTCCSSSEEEET-
T ss_pred hCCCCEEEEEEeCCCCCCchHHHH------HHHHHHHHhccCCCCCceeEEEEecCC--cCHHHHHhcCCCcCCEEEEE-
Confidence 34578888877777 77787762 223333222 2 444444443 44678999999999999988
Q ss_pred CCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 248 PITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 248 p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
+| ..+..|..+..++...+..+++
T Consensus 94 --~g--~~~~~G~~~~~~l~~fv~~~l~ 117 (243)
T 2hls_A 94 --GG--EVRWTGIPAGEEIRALVEVIMR 117 (243)
T ss_dssp --TT--TEEEESCCCTTHHHHHHHHHHH
T ss_pred --CC--ceeEcCCCcHHHHHHHHHHHHh
Confidence 35 5567787666666665555543
No 375
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=85.74 E-value=0.94 Score=37.41 Aligned_cols=45 Identities=16% Similarity=0.395 Sum_probs=40.8
Q ss_pred ccCCcchHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 3 SVLSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 3 ~~l~~~~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
+.|++.+++ +|.+++++ |-+...|+.-|..++.|.+.|++-.|..
T Consensus 2 ~~l~~~e~~-~v~~l~~M--GFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 2 SHMSPSERQ-CVETVVNM--GYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp CCSCHHHHH-HHHHHHHT--TCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CCCCHHHHH-HHHHHHHc--CCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 468888855 99999999 9999999999999999999999999875
No 376
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=85.70 E-value=3.8 Score=36.81 Aligned_cols=82 Identities=13% Similarity=0.248 Sum_probs=56.1
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecC---C----------------------------
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDD---T---------------------------- 225 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~---s---------------------------- 225 (444)
..|..+|.+.+.+|..|..|.. .+.++.+. .+++..+... +
T Consensus 85 ~~k~~vv~F~d~~Cp~C~~~~~------~l~~~~~~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~ 158 (211)
T 1t3b_A 85 NEKHVVTVFMDITCHYCHLLHQ------QLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLP 158 (211)
T ss_dssp TCSEEEEEEECTTCHHHHHHHT------THHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCC
T ss_pred CCCEEEEEEECCCCHhHHHHHH------HHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCC
Confidence 5788999999999999999853 35555543 3333333321 0
Q ss_pred ---------hhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHh
Q 013379 226 ---------SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 272 (444)
Q Consensus 226 ---------~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~ 272 (444)
.+...+++.|++...|+++|. +|+ .+.|..+++.|...|..
T Consensus 159 ~~~~~~~~v~~~~~l~~~~gV~gTPt~vi~---nG~---~~~G~~~~~~l~~~l~~ 208 (211)
T 1t3b_A 159 KEVKTPNIVKKHYELGIQFGVRGTPSIVTS---TGE---LIGGYLKPADLLRALEE 208 (211)
T ss_dssp SSCCCSSHHHHHHHHHHHHTCCSSCEEECT---TSC---CCCSCCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCCcCCEEEEe---CCE---EecCCCCHHHHHHHHHh
Confidence 122456788999999999873 465 46798888888877654
No 377
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=85.55 E-value=6.7 Score=30.91 Aligned_cols=76 Identities=7% Similarity=0.018 Sum_probs=55.3
Q ss_pred CCceEEEEECCCCc--eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCC--CCCcccCCCCcCCChhhcCCCC-ce
Q 013379 364 SLLCRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAI--PGATKSLDYDSKLTFEDSGLAN-AM 438 (444)
Q Consensus 364 ~~~~~i~iRlP~G~--r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~f--Prr~~~l~~~~~~Tl~e~gL~~-~~ 438 (444)
++.++|.|..++.+ .++++|..++||..|-.-|... .|.+...-+|+-.= ++....+ .+.++||.+.|+.+ ++
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~-~Gip~~~QrLi~~g~~g~~~~~L-~~D~~tL~~Y~I~~g~~ 89 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKK-CGTSVNSMALELYDDSGSKVAVL-SDDSRPLGFFSPFDGFR 89 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHH-HCCCTTSEEEEEECSSSCBCCCS-SGGGSCHHHHCCCSCCE
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHH-HCcCHHHeEEEEecCCCccccee-cCCcCCHHHCCCCCCCE
Confidence 56889999987774 7999999999999999999886 46666777776421 1211012 35689999999985 55
Q ss_pred EEE
Q 013379 439 ISV 441 (444)
Q Consensus 439 v~v 441 (444)
|.|
T Consensus 90 Ihl 92 (97)
T 2kj6_A 90 LHI 92 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 378
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=85.25 E-value=6.4 Score=33.81 Aligned_cols=88 Identities=11% Similarity=-0.055 Sum_probs=46.1
Q ss_pred cCCeEEEEEe-CCCchhhHH-HHhhccCChhHHHHHhcCE-EEEEeecCChhH---------------------HHHHHH
Q 013379 179 QDKWLLVNLQ-STKEFSSHM-LNRDTWANEAVSQTISTNF-IFWQVYDDTSEG---------------------KKVCTY 234 (444)
Q Consensus 179 ~~K~LlVyl~-~~~~~~~~~-f~rdv~~~~~V~~~l~~~f-V~w~~~~~s~eg---------------------~~~~~~ 234 (444)
.+|+++|++. ..+|..|.. -...+ ++...+|-..++ .+++++.++++. ..+++.
T Consensus 30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l--~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ 107 (167)
T 2wfc_A 30 AGKKGVLFAVPGAFTPGSSKTHLPGY--VEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKA 107 (167)
T ss_dssp TTSEEEEEEESCTTCHHHHHTHHHHH--HHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTSHHHHH
T ss_pred CCCcEEEEEeCCCCCCCCCHHHHHHH--HHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCCcHHHH
Confidence 4677777765 677777765 11100 001111222455 566666555432 223445
Q ss_pred cCCCC-----------CcEEEEEeCCCCeeeEEEeCC-------CChHHHHHHH
Q 013379 235 YKLDS-----------IPVVLVVDPITGQKMRSWCGM-------VQPESLLEDL 270 (444)
Q Consensus 235 y~~~~-----------~P~l~ii~p~tg~~v~~~~G~-------~~~~~~l~~L 270 (444)
|++.. .|+.+|| + .|.++..+.+. ..++.+++.|
T Consensus 108 ~gv~~~~~~~~g~~~~~p~t~lI-~-~G~I~~~~~~~~~~~~~~~~~~~~~~~~ 159 (167)
T 2wfc_A 108 VDMELDLSAVLGNVRSKRYSLVI-E-DGVVTKVNVEPDGKGLTCSLAPNILSQL 159 (167)
T ss_dssp TTCEECCHHHHSSCEECCEEEEE-E-TTEEEEEEECTTSSSSSTTSHHHHHHHH
T ss_pred cCCccccccccCcccceEEEEEE-e-CCEEEEEEecCCCCcceeccHHHHHHHh
Confidence 55532 3888888 5 78877666542 2455665555
No 379
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=85.00 E-value=0.17 Score=42.30 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=0.0
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
+|.|+..+|+.+.-.+..++||.+|-.-|... .+.+.....|+ |-++. | +.+.||.+.|+.+ ++|.+
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrLi--~~Gk~--L--~D~~tL~~~~I~~gsti~l 69 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-EGIPPDQQRLI--FAGKQ--L--EDGRTLSDYNIQKESTLHL 69 (128)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHH-hCcChHHEEEE--ECCEE--C--CCCCchhhhccCCCCEEEE
Confidence 57788999999888999999999999998875 35555566666 34553 4 4588999999984 55543
No 380
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=84.61 E-value=4.6 Score=36.41 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=51.5
Q ss_pred CCCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCce
Q 013379 363 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAM 438 (444)
Q Consensus 363 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~ 438 (444)
+...++|+|+. +|+.+..+...+++|..|+...... .|.+...++|.-. ++. + ..+.|.+++|+....
T Consensus 26 ~~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er-~Gi~~~~~RF~Fd--G~r--I--~~~~TP~dL~MEdgD 93 (200)
T 3pge_A 26 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-QGKEMDSLRFLYD--GIR--I--QADQTPEDLDMEDND 93 (200)
T ss_dssp CCCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHH-HSSCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTE
T ss_pred CCCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHH-hCCChhhEEEEEC--CEE--c--CCCCCHHHcCCCCCC
Confidence 35678999986 9999999999999999999875443 3556666666654 443 3 568899999998544
No 381
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=84.60 E-value=3.7 Score=35.81 Aligned_cols=19 Identities=16% Similarity=-0.015 Sum_probs=14.2
Q ss_pred CCcEEEEEeCCCCeeeEEEeC
Q 013379 239 SIPVVLVVDPITGQKMRSWCG 259 (444)
Q Consensus 239 ~~P~l~ii~p~tg~~v~~~~G 259 (444)
..|..+||+ .|.+...+.+
T Consensus 137 ~~r~tfvID--dG~I~~~~v~ 155 (173)
T 3mng_A 137 LKRFSMVVQ--DGIVKALNVE 155 (173)
T ss_dssp BCCEEEEEE--TTEEEEEEEC
T ss_pred eEEEEEEEE--CCEEEEEEEe
Confidence 358888898 6887777655
No 382
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=84.44 E-value=7.2 Score=40.09 Aligned_cols=81 Identities=10% Similarity=0.105 Sum_probs=58.2
Q ss_pred cCCeEEEEEeCCCchhhHHHHhhccCChhHHHH--HhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEE
Q 013379 179 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQT--ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 256 (444)
Q Consensus 179 ~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~--l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~ 256 (444)
..+..++.+..++|..|..+.. .+.++ .+.+..+..++.+ +...++..|++.+.|+++| +|+.+..
T Consensus 116 ~~~~~i~~f~a~~C~~C~~~~~------~l~~~a~~~~~v~~~~vd~~--~~~~~~~~~~i~svPt~~i----~g~~~~~ 183 (521)
T 1hyu_A 116 DGDFEFETYYSLSCHNCPDVVQ------ALNLMAVLNPRIKHTAIDGG--TFQNEITERNVMGVPAVFV----NGKEFGQ 183 (521)
T ss_dssp CSCEEEEEEECTTCSSHHHHHH------HHHHHHHHCTTEEEEEEETT--TCHHHHHHTTCCSSSEEEE----TTEEEEE
T ss_pred CCCcceEEEECCCCcCcHHHHH------HHHHHHhHcCceEEEEEech--hhHHHHHHhCCCccCEEEE----CCEEEec
Confidence 3556677888999999998753 22222 2236667666654 5567899999999999976 5877644
Q ss_pred EeCCCChHHHHHHHHhh
Q 013379 257 WCGMVQPESLLEDLVPF 273 (444)
Q Consensus 257 ~~G~~~~~~~l~~L~~~ 273 (444)
|..+.++++..|...
T Consensus 184 --G~~~~~~l~~~l~~~ 198 (521)
T 1hyu_A 184 --GRMTLTEIVAKVDTG 198 (521)
T ss_dssp --SCCCHHHHHHHHCCS
T ss_pred --CCCCHHHHHHHHhhc
Confidence 888888888887654
No 383
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=84.31 E-value=3.1 Score=36.15 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=54.2
Q ss_pred ceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 366 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 366 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
...|.||..+|+.+.-++..++||..|-.-|.... +.+....+|+.. ++. + +.+.||.+.|+.+ ++|.+
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gip~~~q~L~~~--g~~--L--~D~~tL~~y~i~~g~tl~l 165 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHL 165 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCCEEET--TEE--C--CTTSBSGGGTCCTTCEEEE
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHHh-CCCceeEEEEEC--Ccc--C--CCCCcHHHhCCCCCCEEEE
Confidence 46788899999999999999999999999998763 666677777753 443 4 4578999999985 55544
No 384
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=82.77 E-value=4.2 Score=35.81 Aligned_cols=18 Identities=11% Similarity=-0.008 Sum_probs=13.3
Q ss_pred CcEEEEEeCCCCeeeEEEeC
Q 013379 240 IPVVLVVDPITGQKMRSWCG 259 (444)
Q Consensus 240 ~P~l~ii~p~tg~~v~~~~G 259 (444)
.|+.+||+ .|.++..+.|
T Consensus 149 ~r~tfiId--dG~I~~~~~~ 166 (184)
T 3uma_A 149 KRYSMLVE--DGVVKALNIE 166 (184)
T ss_dssp CCEEEEEE--TTEEEEEEEC
T ss_pred eeEEEEEC--CCEEEEEEEe
Confidence 57788884 7888777765
No 385
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=82.74 E-value=8.6 Score=30.38 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=51.9
Q ss_pred CCceEEEEECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCceEEE
Q 013379 364 SLLCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISV 441 (444)
Q Consensus 364 ~~~~~i~iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v~v 441 (444)
+..++|.|+-.+|+ .+..+...+++++.|++...... +.....+++.-. +.. + ..+.|.+++++...-++=
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~-g~~~~~vrF~FD--G~r--I--~~~~TP~dLdMEDgD~ID 94 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAM-GLSGRKLSFFFD--GTK--L--SGRELPADLGMESGDLIE 94 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHT-TCSSSCCEEEET--TEE--C--CSCSCHHHHTCCTTEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHH-CCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEE
Confidence 46788999999995 78899999999999998755543 444455555543 332 3 568899999999655443
No 386
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=82.65 E-value=3.9 Score=36.60 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=49.9
Q ss_pred CCCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCceE
Q 013379 363 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMI 439 (444)
Q Consensus 363 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~v 439 (444)
+...+.|.|+. +|+.+..+...+++|..|++..... .+.+...++|+-. ++. + +.+.|.+++++....+
T Consensus 54 p~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcER-qGL~~~sIRFLFD--GqR--I--~~ddTPeDLdMEDGDt 122 (207)
T 3tix_A 54 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-QGKEMDSLTFLYD--GIE--I--QADQTPEDLDMEDNDI 122 (207)
T ss_dssp -CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHH-TTCCGGGSCEEET--TEE--C--CSSCCTTTTTCCTTEE
T ss_pred CCCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHH-hCCCcccEEEEEC--Cee--c--CCCCCHHHcCCCCCCE
Confidence 35678899985 9999999999999999999876543 3555455544443 332 3 4688999999985443
No 387
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=82.48 E-value=3.8 Score=32.96 Aligned_cols=75 Identities=12% Similarity=0.124 Sum_probs=49.0
Q ss_pred EEEEEeCCCchhhHHHHhhccCChhHHHHHhc-CEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCC
Q 013379 183 LLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV 261 (444)
Q Consensus 183 LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~-~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~ 261 (444)
.++.+..++|..|..+. +.+.++..+ .+-+-.++++.. ..++..|++. .|.|+++. +|+.+ ..|..
T Consensus 31 ~vv~y~~~~C~~C~~a~------~~L~~l~~e~~i~~~~vDId~d--~~l~~~ygv~-VP~l~~~~--dG~~v--~~g~~ 97 (107)
T 2fgx_A 31 KLVVYGREGCHLCEEMI------ASLRVLQKKSWFELEVINIDGN--EHLTRLYNDR-VPVLFAVN--EDKEL--CHYFL 97 (107)
T ss_dssp CEEEEECSSCHHHHHHH------HHHHHHHHHSCCCCEEEETTTC--HHHHHHSTTS-CSEEEETT--TTEEE--ECSSC
T ss_pred EEEEEeCCCChhHHHHH------HHHHHHHHhcCCeEEEEECCCC--HHHHHHhCCC-CceEEEEE--CCEEE--EecCC
Confidence 46777888999999873 222333322 355555677642 2467789986 99987653 58765 35778
Q ss_pred ChHHHHHHH
Q 013379 262 QPESLLEDL 270 (444)
Q Consensus 262 ~~~~~l~~L 270 (444)
+++.+...|
T Consensus 98 ~~~~L~~~L 106 (107)
T 2fgx_A 98 DSDVIGAYL 106 (107)
T ss_dssp CCHHHHHHH
T ss_pred CHHHHHHHh
Confidence 888776655
No 388
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=82.33 E-value=2.4 Score=28.59 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=35.0
Q ss_pred hHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 9 DKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 9 ~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
+-++.|+..|+. |-|.+.|++-|..++.|+|.|.+...+.
T Consensus 3 ~~e~~I~~L~s~--Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 3 QLSSEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHHHHHHHHHHT--TBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHc--CCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 446789999998 9999999999999999999998876653
No 389
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=81.26 E-value=4 Score=30.12 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=38.4
Q ss_pred EEEeCCCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCCh-hHHHHHHHcCCCCCcEEEEEeCCCCeee
Q 013379 185 VNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTS-EGKKVCTYYKLDSIPVVLVVDPITGQKM 254 (444)
Q Consensus 185 Vyl~~~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s~-eg~~~~~~y~~~~~P~l~ii~p~tg~~v 254 (444)
+.+..++|..|..+. +.+.+++++ .|.+. +++.. +...++..|++.++|.+.| +|+++
T Consensus 5 ~~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~gv~~vPt~~i----~g~~~ 66 (80)
T 2k8s_A 5 AIFYHAGCPVCVSAE------QAVANAIDPSKYTVEIV--HLGTDKARIAEAEKAGVKSVPALVI----DGAAF 66 (80)
T ss_dssp EEEEECSCHHHHHHH------HHHHHHSCTTTEEEEEE--ETTTCSSTHHHHHHHTCCEEEEEEE----TTEEE
T ss_pred EEEeCCCCCchHHHH------HHHHHHHHhcCCeEEEE--EecCChhhHHHHHHcCCCcCCEEEE----CCEEE
Confidence 344567899999884 334556654 35555 44432 3456778899999999876 57654
No 390
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.97 E-value=7.2 Score=30.95 Aligned_cols=70 Identities=9% Similarity=0.044 Sum_probs=49.4
Q ss_pred ceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEEE
Q 013379 366 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT 442 (444)
Q Consensus 366 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v~ 442 (444)
...+.+++ .|+.+.-.+..++||.+|-.-|... .+.+...=+| ..||... + +.+.||.++||.+ ++|.++
T Consensus 9 m~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~-tgIpp~~QkL-i~~~~gk--L--~D~~tLs~~~I~~gstL~lv 79 (100)
T 2dzm_A 9 MLDFRVEY-RDRNVDVVLEDTCTVGEIKQILENE-LQIPVSKMLL-KGWKTGD--V--EDSTVLKSLHLPKNNSLYVL 79 (100)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHH-HCCCTTTCCE-ECCSSSC--C--CTTSBHHHHCCCSEEEEEEC
T ss_pred eEEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHH-HCCChhHeEE-EccCCCC--C--CCcCCHHHcCCCCCCEEEEE
Confidence 56677777 5777888899999999999998875 3544444445 3455543 4 4478999999996 445543
No 391
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=80.13 E-value=9 Score=29.69 Aligned_cols=74 Identities=14% Similarity=-0.013 Sum_probs=52.2
Q ss_pred ceEEEEECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCC-CCcc-cCCCCcCCChhhcCCCC-ceEEE
Q 013379 366 LCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIP-GATK-SLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 366 ~~~i~iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fP-rr~~-~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
.++|.|+..++. ...+++..++||..|-.-|... .+.+...-+|+..-+ .+.. .+ .+.+.||.+.|+.+ ++|.|
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~-~gip~~~qrL~~~~~~g~~~~~l-~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELV-VGSPASCMELELYGADDKFYSKL-DQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHH-TCSCTTTCBCEEECSSSCEEEEC-CCSSSBTTSSSCCTTCEEEE
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHH-HCCCHHHeEEEEeCCCCcccccc-CCCcCCHhHCCCCCCCEEEE
Confidence 477888876664 6999999999999999999886 466666666665432 2210 02 25689999999985 44544
No 392
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=80.11 E-value=1.6 Score=35.08 Aligned_cols=32 Identities=31% Similarity=0.329 Sum_probs=27.3
Q ss_pred HHHhhcccccCCCHHHHHHHHHHcCCCHHHHHH
Q 013379 13 MVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQ 45 (444)
Q Consensus 13 ~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~ 45 (444)
.|.-.|+= +|++.+.|+..|+.|||||=.||-
T Consensus 68 di~lv~~q-~~vs~~~A~~aL~~~~gDiv~Ai~ 99 (102)
T 1tr8_A 68 DIELVMNQ-TGASREDATRALQETGGDLAEAIM 99 (102)
T ss_dssp HHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHH
Confidence 45555666 899999999999999999999874
No 393
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=79.85 E-value=9.2 Score=34.55 Aligned_cols=34 Identities=9% Similarity=0.104 Sum_probs=24.6
Q ss_pred CCcEEEEEeCCCCeeeEEEeCC----CChHHHHHHHHhh
Q 013379 239 SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVPF 273 (444)
Q Consensus 239 ~~P~l~ii~p~tg~~v~~~~G~----~~~~~~l~~L~~~ 273 (444)
..|.++|||| .|.+...+.|. .+.++++..|...
T Consensus 127 ~~p~~flID~-~G~I~~~~~~~~~~g~~~~ell~~i~~l 164 (220)
T 1xcc_A 127 TCRCLFFISP-EKKIKATVLYPATTGRNAHEILRVLKSL 164 (220)
T ss_dssp ECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred ccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 3799999997 68887777543 3567777766654
No 394
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=79.67 E-value=6.6 Score=30.14 Aligned_cols=69 Identities=7% Similarity=0.037 Sum_probs=48.2
Q ss_pred ceEEEEECC--CCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcC-----CCCCcccCCCCcCCChhhcCCCC-c
Q 013379 366 LCRVGVRLP--DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA-----IPGATKSLDYDSKLTFEDSGLAN-A 437 (444)
Q Consensus 366 ~~~i~iRlP--~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~-----fPrr~~~l~~~~~~Tl~e~gL~~-~ 437 (444)
+++|.|... .+....+||..++||..|-+-|... .|.+...=+|+-. |..+ + .+.+.||.+.|+.+ .
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~-~Gip~~~QrLi~~~~~~~~~g~---~-l~d~~tL~~Y~i~~g~ 76 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTH-FATPPEYMQLQLIDDRGITIEK---N-MANDKQLGYYQCRDEF 76 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTT-SCCCGGGEEEEEECTTSCEEES---S-CCTTSBGGGGTCCTTC
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHH-HCCCHHHEEEEEecCCCCceee---E-cCCCCCHHHCCCCCCC
Confidence 456666543 3344699999999999999999875 5666666666631 2233 2 36689999999984 5
Q ss_pred eE
Q 013379 438 MI 439 (444)
Q Consensus 438 ~v 439 (444)
+|
T Consensus 77 ~i 78 (86)
T 4b6w_A 77 VI 78 (86)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 395
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=79.11 E-value=0.39 Score=41.55 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=0.0
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
.|.||..+|+.+.-.+..++||.+|-.-|... .+.+.....|+ |-.+. | +.+.||.+.|+.+ ++|.+
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~-~gip~~~QrLi--~~Gk~--L--~D~~tL~dygI~~gstL~L 69 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-EGIPPDQQRLI--FAGKQ--L--EDGRTLSDYNIQKESTLHL 69 (152)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHH-hCCCHHHEEEE--ECCEE--c--cccCcHHHcCCCCCCEEEE
Confidence 57889999998888899999999999998875 35555555666 33553 4 4578999999984 55543
No 396
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=77.93 E-value=1.7 Score=38.93 Aligned_cols=37 Identities=19% Similarity=0.378 Sum_probs=34.0
Q ss_pred HHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013379 12 SMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (444)
Q Consensus 12 ~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (444)
.+|....+. ||+..-.|+.-|..+|||+|.|+...=.
T Consensus 5 ~~VKeLRe~-TGagmmdCKkAL~e~~GD~ekAie~LR~ 41 (196)
T 1aip_C 5 ELIKKLREA-TGAGMMDVKRALEDAGWDEEKAVQLLRE 41 (196)
T ss_dssp HHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 478899999 9999999999999999999999998765
No 397
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=77.89 E-value=9.8 Score=33.01 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=31.3
Q ss_pred HHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 231 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 231 ~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
.+..+++...|+++| +|+.+....|..+.+.|...|...+.
T Consensus 144 ~a~~~gv~gtPt~~v----ng~~~~~~~G~~~~e~l~~~i~~l~~ 184 (192)
T 3h93_A 144 LAMAYQVTGVPTMVV----NGKYRFDIGSAGGPEETLKLADYLIE 184 (192)
T ss_dssp HHHHHTCCSSSEEEE----TTTEEEEHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCeEEE----CCEEEecccccCCHHHHHHHHHHHHH
Confidence 456788999998876 57766555588889988888877765
No 398
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=77.73 E-value=23 Score=31.94 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=25.4
Q ss_pred CCcEEEEEeCCCCeeeEEEeCCC----ChHHHHHHHHhhh
Q 013379 239 SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM 274 (444)
Q Consensus 239 ~~P~l~ii~p~tg~~v~~~~G~~----~~~~~l~~L~~~l 274 (444)
..|.++|||+ .|.++..+.|.. +.++++..|....
T Consensus 130 ~~p~~fiID~-~G~I~~~~~~~~~~gr~~~eil~~i~~l~ 168 (224)
T 1prx_A 130 TARVVFVFGP-DKKLKLSILYPATTGRNFDEILRVVISLQ 168 (224)
T ss_dssp TCCEEEEECT-TSBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred cceEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 3799999997 688887776532 5677777666543
No 399
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=77.44 E-value=1.3 Score=43.98 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=38.8
Q ss_pred CcchHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013379 6 SANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (444)
Q Consensus 6 ~~~~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (444)
+-...++.|.+.+++ |-+.+.|+.-|.+++||++.||+-.|++-
T Consensus 164 ~g~~~~~~i~~l~~M--Gf~~~~~~~AL~a~~nn~~~A~e~L~~gi 207 (368)
T 1oqy_A 164 TGSEYETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLTGI 207 (368)
T ss_dssp CTTTHHHHHHHHHTT--TCCSHHHHHHHHHSCSSTTHHHHTTTTSS
T ss_pred CCcchHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 334567799999999 99999999999999999999999999853
No 400
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=77.40 E-value=13 Score=33.54 Aligned_cols=64 Identities=8% Similarity=0.108 Sum_probs=40.3
Q ss_pred HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCee
Q 013379 178 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 253 (444)
Q Consensus 178 ~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~ 253 (444)
...+++.+.+.+.++..... .+.+++....|......++ ...+++.|+++.||+++++.+ +|..
T Consensus 155 ~~~~~~al~f~~~~~~~~~~---------~~~d~~~~~~i~v~~~~~~--~~~l~~~f~v~~~Pslvl~~~-~g~~ 218 (244)
T 3q6o_A 155 NNEEYLALIFEXGGSYLARE---------VALDLSQHKGVAVRRVLNT--EANVVRKFGVTDFPSCYLLFR-NGSV 218 (244)
T ss_dssp CCCSEEEEEEECTTCCHHHH---------HHHHTTTCTTEEEEEEETT--CHHHHHHHTCCCSSEEEEEET-TSCE
T ss_pred CCCceEEEEEEECCcchHHH---------HHHHhccCCceEEEEEeCc--hHHHHHHcCCCCCCeEEEEeC-CCCe
Confidence 67788878777765432222 2334454333444433332 256889999999999999996 5654
No 401
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=77.33 E-value=4.7 Score=33.15 Aligned_cols=60 Identities=13% Similarity=0.070 Sum_probs=45.8
Q ss_pred EEEECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC
Q 013379 369 VGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 435 (444)
Q Consensus 369 i~iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~ 435 (444)
|.||.-.|+ .+.-....++||..|-.-|... .+.+....+|+. -++. | +.++||.++|+.
T Consensus 3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~-egIP~~qQrLi~--~Gk~--L--eD~~TLsdy~I~ 63 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGI-LKRPPEEQRLYK--DDQL--L--DDGKTLGECGFT 63 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHH-HCCCGGGEEEEE--TTEE--C--CTTSBHHHHTCC
T ss_pred EEEEEecCCEEEEEEeCCcChHHHHHHHHHHH-hCCCHHHeEEEE--CCeE--C--CCCCCHHHcCcc
Confidence 445554565 4777899999999999999875 466777888884 3553 4 668999999998
No 402
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.13 E-value=7.2 Score=32.01 Aligned_cols=77 Identities=8% Similarity=0.097 Sum_probs=45.7
Q ss_pred ccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCC--hhH-HHHHHHcCCCCCc
Q 013379 165 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--SEG-KKVCTYYKLDSIP 241 (444)
Q Consensus 165 ~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s--~eg-~~~~~~y~~~~~P 241 (444)
......+.+..+....+ ++| +..++|..|..+.. +.+-+.-.|..+-++.+. ++. ..++..|++.++|
T Consensus 12 ~~~~~~~~~~~~i~~~~-vvv-f~~~~Cp~C~~~~~-------~L~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP 82 (130)
T 2cq9_A 12 LATAPVNQIQETISDNC-VVI-FSKTSCSYCTMAKK-------LFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVP 82 (130)
T ss_dssp CSCCHHHHHHHHHHHSS-EEE-EECSSCSHHHHHHH-------HHHHHTCCCEEEETTTSTTHHHHHHHHHHHHSSCCSS
T ss_pred ccHHHHHHHHHHHcCCc-EEE-EEcCCChHHHHHHH-------HHHHcCCCcEEEECcCCcCcHHHHHHHHHHhCCCCcC
Confidence 34556666666666665 445 45678999987631 222233466666433331 121 2477889999999
Q ss_pred EEEEEeCCCCeee
Q 013379 242 VVLVVDPITGQKM 254 (444)
Q Consensus 242 ~l~ii~p~tg~~v 254 (444)
.|. + +|+.+
T Consensus 83 ~l~-i---~G~~i 91 (130)
T 2cq9_A 83 RIF-V---NGTFI 91 (130)
T ss_dssp EEE-E---TTEEE
T ss_pred EEE-E---CCEEE
Confidence 984 4 46654
No 403
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=75.88 E-value=6.1 Score=29.38 Aligned_cols=47 Identities=9% Similarity=0.120 Sum_probs=39.8
Q ss_pred CCcchHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013379 5 LSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (444)
Q Consensus 5 l~~~~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (444)
++....+..|.+..+|---....-...+|+.+|.|+|.+|+..|++.
T Consensus 8 ~~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~ 54 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER 54 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence 45566677888888885556899999999999999999999999963
No 404
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=75.83 E-value=13 Score=30.28 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=53.2
Q ss_pred CceEEEEECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCC-CCCcc-cCCCCcCCChhhcCCCC-ceEE
Q 013379 365 LLCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAI-PGATK-SLDYDSKLTFEDSGLAN-AMIS 440 (444)
Q Consensus 365 ~~~~i~iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~f-Prr~~-~l~~~~~~Tl~e~gL~~-~~v~ 440 (444)
..++|.|+..++. .+.++|..++||..|-.-|... .|.+...-+|+-.= ..+.. .+ .+.+.||.+.|+.+ ++|.
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~-~Gip~~~qrL~~~g~~~~~~~~l-~~D~~tL~~y~i~~g~~ih 82 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELV-VGTTVDSMRIQLFDGDDQLKGEL-TDGAKSLKDLGVRDGYRIH 82 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHH-HCCCTTTEEEEEECSSSSEEEEC-CCCSSBTTTTTCCSSEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHH-hCCCHHHeEEEEecCCCcccccc-CCCcCCHHHCCCCCCCEEE
Confidence 3678888877664 6999999999999999999886 46666777776531 11210 12 25689999999985 4454
Q ss_pred E
Q 013379 441 V 441 (444)
Q Consensus 441 v 441 (444)
|
T Consensus 83 v 83 (122)
T 1t0y_A 83 A 83 (122)
T ss_dssp E
T ss_pred E
Confidence 4
No 405
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=74.95 E-value=2.2 Score=40.87 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=34.6
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (444)
..+|.+..+. ||+..-.|+.-|..+|||+|.|+...=.
T Consensus 5 a~~VKeLRe~-TGagmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 5 KELLMKLRRK-TGYSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3478899999 9999999999999999999999998865
No 406
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}
Probab=73.72 E-value=21 Score=29.91 Aligned_cols=62 Identities=16% Similarity=0.266 Sum_probs=42.5
Q ss_pred cCEEEEEeecCChhHHHHHHHcCCCC--CcEEEEEeC-CCCeeeEEEe-CCCChHHHHHHHHhhhhc
Q 013379 214 TNFIFWQVYDDTSEGKKVCTYYKLDS--IPVVLVVDP-ITGQKMRSWC-GMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 214 ~~fV~w~~~~~s~eg~~~~~~y~~~~--~P~l~ii~p-~tg~~v~~~~-G~~~~~~~l~~L~~~l~~ 276 (444)
..++|..++.+..+...++..+++.. +|.++|++. ..+.+ .... |.++++.+...+..+++-
T Consensus 63 gki~Fv~vd~~~~~~~~~l~~fGl~~~~~P~v~i~~~~~~~~K-y~~~~~~~t~~~i~~Fv~d~l~G 128 (147)
T 3bj5_A 63 GKILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTK-YKPESEELTAERITEFCHRFLEG 128 (147)
T ss_dssp TTCEEEEECTTCGGGHHHHHHTTCCGGGCSEEEEEECSSSCEE-ECCSCCCCCHHHHHHHHHHHHTT
T ss_pred CceEEEEEecchHhHHHHHHHcCCCcccCCEEEEEeccccccc-CCCCcccCCHHHHHHHHHHHHcC
Confidence 45666655654456556888999974 999999986 33433 2223 677888888877777763
No 407
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=70.88 E-value=10 Score=36.59 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=53.7
Q ss_pred CceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcC-CCCCcccCCCCcCCChhhcCCCC-ceEEE
Q 013379 365 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA-IPGATKSLDYDSKLTFEDSGLAN-AMISV 441 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~-fPrr~~~l~~~~~~Tl~e~gL~~-~~v~v 441 (444)
..++|.|+. +|+.+.-....++||.+|-.-|... .+.+...=+|+-. |.++. + +.+.||.++||.+ ++|++
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~-tgVpp~~QkLi~~k~~Gk~--l--~D~~~L~~~~ik~g~~l~L 76 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRK-TQVRPERQKLLNLKYKGKT--A--ADNVKISALELKPNFKLMM 76 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHH-HCCCGGGCEETTCBSSSSB--C--CTTSBTTSSCCC--CEEEE
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHH-HCcCHHHeEEeecccCCcc--c--CccccHHHcCCCCCCEEEE
Confidence 467899997 7888999999999999999999875 4666666677743 44553 4 4478999999984 55654
No 408
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=70.37 E-value=9.3 Score=26.00 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=35.4
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhcCC
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYVGN 51 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~~~ 51 (444)
+++|.|-..+--|.+.++-++-|+++|-|+..||+..++..
T Consensus 10 e~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRD 50 (53)
T 2qho_B 10 EELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRD 50 (53)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC--
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhccc
Confidence 56888888777899999999999999999999999988753
No 409
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=69.69 E-value=18 Score=28.92 Aligned_cols=74 Identities=12% Similarity=0.032 Sum_probs=50.8
Q ss_pred CCCCCCceEEEEECCC----CceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC
Q 013379 360 KVDRSLLCRVGVRLPD----GRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 435 (444)
Q Consensus 360 ~~~~~~~~~i~iRlP~----G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~ 435 (444)
..-+++.++++|.+-| +..+.-.+..++||..|-+-|.... |.+...=+|+.+ ++ + .+.+.||.+.|+.
T Consensus 16 ~~~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~-Gipp~~QRli~g--gk---l-l~D~~TL~~ygI~ 88 (105)
T 4dbg_A 16 EVSPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDY-GFPPVLQQWVIG--QR---L-ARDQETLHSHGVR 88 (105)
T ss_dssp ----CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TE---E-ECTTCBTGGGTCC
T ss_pred CcCCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHh-CCCHHHEEEecc--Ce---E-ccCcCcHHHcCCC
Confidence 3334456777777755 3578889999999999999998764 666655567754 33 3 3558999999994
Q ss_pred --CceEE
Q 013379 436 --NAMIS 440 (444)
Q Consensus 436 --~~~v~ 440 (444)
+++|.
T Consensus 89 ~~G~t~h 95 (105)
T 4dbg_A 89 QNGDSAY 95 (105)
T ss_dssp STTCEEE
T ss_pred CCCCEEE
Confidence 45553
No 410
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=64.20 E-value=20 Score=26.02 Aligned_cols=73 Identities=10% Similarity=0.055 Sum_probs=42.6
Q ss_pred EEEEeCCCchhhHHHHhhccCChhHHHHHh--cCEEEEEeecCChh--HHHHHHHcC--CCCCcEEEEEeCCCCeeeEEE
Q 013379 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE--GKKVCTYYK--LDSIPVVLVVDPITGQKMRSW 257 (444)
Q Consensus 184 lVyl~~~~~~~~~~f~rdv~~~~~V~~~l~--~~fV~w~~~~~s~e--g~~~~~~y~--~~~~P~l~ii~p~tg~~v~~~ 257 (444)
++.+..++|..|+.+.. .+.++.. .++-+..++++... ...++..|+ +.++|.+ ++ +|+.+
T Consensus 3 v~~f~~~~C~~C~~~~~------~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i-~~---~g~~i--- 69 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKD------LAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI-FV---DQQHI--- 69 (85)
T ss_dssp EEEECCTTSTHHHHHHH------HHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE-EE---TTEEE---
T ss_pred EEEEeCCCCCCHHHHHH------HHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeE-EE---CCEEE---
Confidence 45567788999988732 1222221 34556555664321 136788888 8999998 44 46654
Q ss_pred eCCCChHHHHHHHHh
Q 013379 258 CGMVQPESLLEDLVP 272 (444)
Q Consensus 258 ~G~~~~~~~l~~L~~ 272 (444)
.|. +++...+.+
T Consensus 70 ~~~---~~l~~~~~~ 81 (85)
T 1ego_A 70 GGY---TDFAAWVKE 81 (85)
T ss_dssp ESS---HHHHHHHHH
T ss_pred ECH---HHHHHHHHH
Confidence 343 455555544
No 411
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=63.11 E-value=35 Score=29.43 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=25.7
Q ss_pred HHHHHcCCCCCcEEEEEeCCCCeeeEEEeCC--CCh-HHHHHHHHhhhh
Q 013379 230 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGM--VQP-ESLLEDLVPFMD 275 (444)
Q Consensus 230 ~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~--~~~-~~~l~~L~~~l~ 275 (444)
+.++.+++...|+++| +|+.+ +.|. .+. +.|+..|...+.
T Consensus 142 ~~a~~~gv~gtPt~vi----ng~~~--~~g~~~~~~~e~~~~~i~~L~~ 184 (195)
T 3hd5_A 142 QLAEAAHIDGTPAFAV----GGRYM--TSPVLAGNDYAGALKVVDQLIV 184 (195)
T ss_dssp HHHHHTTCCSSSEEEE----TTTEE--ECTTTTTGGGTTHHHHHHHHHH
T ss_pred HHHHHhCCCcCceEEE----CCEEE--eCccccCChHHHHHHHHHHHHH
Confidence 3456789999999986 46543 4443 344 667776665544
No 412
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=62.28 E-value=3 Score=29.33 Aligned_cols=43 Identities=5% Similarity=0.141 Sum_probs=32.9
Q ss_pred cchHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013379 7 ANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFYV 49 (444)
Q Consensus 7 ~~~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (444)
..++.+.+.++.++=-+.|.++=+..|.+++|+++.||+..++
T Consensus 9 ~~e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 9 ENERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4566778999999977789999999999999999999988765
No 413
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=60.54 E-value=24 Score=30.14 Aligned_cols=55 Identities=5% Similarity=-0.117 Sum_probs=25.7
Q ss_pred CeEEEEEeCCCchhhHHH-HhhccCChhHHHHHhcCEE-EEEeecCChhH-HHHHHHcCC
Q 013379 181 KWLLVNLQSTKEFSSHML-NRDTWANEAVSQTISTNFI-FWQVYDDTSEG-KKVCTYYKL 237 (444)
Q Consensus 181 K~LlVyl~~~~~~~~~~f-~rdv~~~~~V~~~l~~~fV-~w~~~~~s~eg-~~~~~~y~~ 237 (444)
+.+|+++-..+|..|..= ...+ ++...+|-..++. +++++.++.+. ..+++.+++
T Consensus 45 ~vvl~~~~a~wcp~C~~eh~p~l--~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~ 102 (171)
T 2pwj_A 45 KVVIFGLPGAYTGVCSSKHVPPY--KHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQA 102 (171)
T ss_dssp EEEEEECSCTTCTTHHHHTHHHH--HHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTC
T ss_pred CEEEEEecCCCCCCCCHHHHHHH--HHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCC
Confidence 355566777777777641 1110 0111122224566 66666665442 334444443
No 414
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=56.67 E-value=34 Score=28.61 Aligned_cols=74 Identities=8% Similarity=0.098 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCC--hhH-HHHHHHcCCCCCcEEE
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--SEG-KKVCTYYKLDSIPVVL 244 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s--~eg-~~~~~~y~~~~~P~l~ 244 (444)
+..+.+..+....+ ++| +..++|..|..+.. +.+-+.-.|..+-++.+. ++. ..++..+++.++|.|.
T Consensus 37 ~~~~~~~~~i~~~~-Vvv-f~~~~Cp~C~~~k~-------~L~~~~i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if 107 (146)
T 2ht9_A 37 APVNQIQETISDNC-VVI-FSKTSCSYCTMAKK-------LFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF 107 (146)
T ss_dssp CCHHHHHHHHHHCS-EEE-EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE
T ss_pred HHHHHHHHHhcCCC-EEE-EECCCChhHHHHHH-------HHHHcCCCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE
Confidence 44555555555554 445 46688999987632 222234456665444331 122 2477889999999984
Q ss_pred EEeCCCCeee
Q 013379 245 VVDPITGQKM 254 (444)
Q Consensus 245 ii~p~tg~~v 254 (444)
+ +|+.+
T Consensus 108 -i---~G~~i 113 (146)
T 2ht9_A 108 -V---NGTFI 113 (146)
T ss_dssp -E---TTEEE
T ss_pred -E---CCEEE
Confidence 4 46643
No 415
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=55.22 E-value=55 Score=25.45 Aligned_cols=72 Identities=10% Similarity=0.117 Sum_probs=43.1
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHh---cCEEEEEeecCC---hhHHH-HHHHcCCCC
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDT---SEGKK-VCTYYKLDS 239 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~---~~fV~w~~~~~s---~eg~~-~~~~y~~~~ 239 (444)
..+.+.++...+..+ ++|| ..++|..|... +.+|+ -.|...-++... .+... +...++..+
T Consensus 6 ~~~~~~~~~~i~~~~-v~vy-~~~~Cp~C~~~----------~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~t 73 (113)
T 3rhb_A 6 SRMEESIRKTVTENT-VVIY-SKTWCSYCTEV----------KTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHT 73 (113)
T ss_dssp CHHHHHHHHHHHHSS-EEEE-ECTTCHHHHHH----------HHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHhcCC-EEEE-ECCCChhHHHH----------HHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCC
Confidence 456667777777776 4444 45689999865 34444 346555444432 22222 555678899
Q ss_pred CcEEEEEeCCCCeee
Q 013379 240 IPVVLVVDPITGQKM 254 (444)
Q Consensus 240 ~P~l~ii~p~tg~~v 254 (444)
+|.|. | +|+.+
T Consensus 74 vP~if-i---~g~~i 84 (113)
T 3rhb_A 74 VPNVF-V---CGKHI 84 (113)
T ss_dssp SCEEE-E---TTEEE
T ss_pred cCEEE-E---CCEEE
Confidence 99994 4 46654
No 416
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=54.94 E-value=53 Score=25.29 Aligned_cols=67 Identities=10% Similarity=0.133 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCeEEEEEeC----CCchhhHHHHhhccCChhHHHHHh---cCEEEEEeecCC-hhH-HHHHHHcCCCCCc
Q 013379 171 KAKDAASVQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDT-SEG-KKVCTYYKLDSIP 241 (444)
Q Consensus 171 ~A~~~A~~~~K~LlVyl~~----~~~~~~~~f~rdv~~~~~V~~~l~---~~fV~w~~~~~s-~eg-~~~~~~y~~~~~P 241 (444)
+-+....+..+ ++||..+ ++|..|... +.+|+ -.|... +++. ++. ..+...++..++|
T Consensus 8 ~~~~~~i~~~~-vvvf~~g~~~~~~C~~C~~~----------~~~L~~~~i~~~~v--di~~~~~~~~~l~~~~g~~~vP 74 (105)
T 2yan_A 8 ERLKVLTNKAS-VMLFMKGNKQEAKCGFSKQI----------LEILNSTGVEYETF--DILEDEEVRQGLKAYSNWPTYP 74 (105)
T ss_dssp HHHHHHHTSSS-EEEEESBCSSSBCTTHHHHH----------HHHHHHHTCCCEEE--EGGGCHHHHHHHHHHHTCCSSC
T ss_pred HHHHHHhccCC-EEEEEecCCCCCCCccHHHH----------HHHHHHCCCCeEEE--ECCCCHHHHHHHHHHHCCCCCC
Confidence 33444445554 6677762 688888765 33343 245555 4433 333 3366778889999
Q ss_pred EEEEEeCCCCeee
Q 013379 242 VVLVVDPITGQKM 254 (444)
Q Consensus 242 ~l~ii~p~tg~~v 254 (444)
.|. + +|+.+
T Consensus 75 ~v~-i---~g~~i 83 (105)
T 2yan_A 75 QLY-V---KGELV 83 (105)
T ss_dssp EEE-E---TTEEE
T ss_pred eEE-E---CCEEE
Confidence 984 4 46643
No 417
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=54.89 E-value=28 Score=30.58 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=37.7
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 229 ~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
...+..+++...|+++|.. +|+.+..+.|..+++.|...|...+..+
T Consensus 166 ~~~a~~~gv~g~Pt~~i~~--~G~~~~~~~G~~~~~~l~~~l~~~~~~~ 212 (216)
T 2in3_A 166 FQRVAQWGISGFPALVVES--GTDRYLITTGYRPIEALRQLLDTWLQQH 212 (216)
T ss_dssp HHHHHHTTCCSSSEEEEEE--TTEEEEEESSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCcccceEEEEE--CCEEEEeccCCCCHHHHHHHHHHHHHhc
Confidence 4457789999999998864 5876667789999999999988877653
No 418
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=54.46 E-value=22 Score=29.11 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=43.8
Q ss_pred EECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCC
Q 013379 371 VRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN 436 (444)
Q Consensus 371 iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~ 436 (444)
||+..|+ .+.-....++||..|-.-|... .+.+...-+|+.. ++. | +.++||.++|+.+
T Consensus 5 l~Ikr~ktTI~ldve~sdTV~~lK~kI~~~-~giPp~qQrLI~~--Gk~--L--eD~kTL~dy~I~~ 64 (118)
T 4ajy_B 5 LMIRRHKTTIFTDAKESSTVFELKRIVEGI-LKRPPDEQRLYKD--DQL--L--DDGKTLGECGFTS 64 (118)
T ss_dssp EEEEEBTEEEEEEEETTSBHHHHHHHHHHH-HCCCGGGEEEEET--TEE--C--CTTSBTTTTTCCG
T ss_pred EEEecCCEEEEEEcCCCChHHHHHHHHHHH-HCCCHHHeEEEeC--CeE--C--CCcCCHHHcCCCc
Confidence 4444455 5667888999999999999875 3666667778743 443 4 5689999999975
No 419
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=53.75 E-value=17 Score=30.67 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=36.6
Q ss_pred hhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 226 SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 226 ~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
.+...+++.|++..+|+++| . +|+ .+.|..+++.|...|......+
T Consensus 96 ~~~~~la~~~gI~gtPt~vi-~--nG~---~i~G~~~~~~l~~~i~~~~~~~ 141 (147)
T 3gv1_A 96 AETTSLGEQFGFNGTPTLVF-P--NGR---TQSGYSPMPQLEEIIRKNQQEG 141 (147)
T ss_dssp HHHHHHHHHTTCCSSCEEEC-T--TSC---EEESCCCTTHHHHHHHHTSCC-
T ss_pred HHHHHHHHHhCCCccCEEEE-E--CCE---EeeCCCCHHHHHHHHHHHHHhc
Confidence 34577889999999999997 2 565 4789999999999888877654
No 420
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=50.54 E-value=45 Score=25.36 Aligned_cols=60 Identities=8% Similarity=0.096 Sum_probs=34.8
Q ss_pred EEEEEeCCCchhhHHHHhhccCChhHHHHHhcC---EEEEEeecCC--hhH-HHHHHHcCCCCCcEEEEEeCCCCeee
Q 013379 183 LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDDT--SEG-KKVCTYYKLDSIPVVLVVDPITGQKM 254 (444)
Q Consensus 183 LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~---fV~w~~~~~s--~eg-~~~~~~y~~~~~P~l~ii~p~tg~~v 254 (444)
+++ +..++|..|..+.. +.+-+... |.+.-++.+. ++. ..+...+++.++|.+. + .|+.+
T Consensus 14 v~~-f~~~~C~~C~~~~~-------~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~-~---~g~~i 79 (105)
T 1kte_A 14 VVV-FIKPTCPFCRKTQE-------LLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVF-I---GKECI 79 (105)
T ss_dssp EEE-EECSSCHHHHHHHH-------HHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEE-E---TTEEE
T ss_pred EEE-EEcCCCHhHHHHHH-------HHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcCeEE-E---CCEEE
Confidence 444 45788999987621 11222223 7766444332 232 2467789999999984 4 46654
No 421
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=48.29 E-value=70 Score=31.00 Aligned_cols=71 Identities=10% Similarity=0.086 Sum_probs=49.6
Q ss_pred CceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCC---CcccCCCCcCCChhhcCCC
Q 013379 365 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPG---ATKSLDYDSKLTFEDSGLA 435 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr---r~~~l~~~~~~Tl~e~gL~ 435 (444)
....+.|.||||+...-.+..+.++++|++-|...+.=....-|-|...-+. .....-.+.++++.+-+..
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~ 157 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVE 157 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCC
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCC
Confidence 4568999999999999999999999999999988764334556888765431 1111223567788776653
No 422
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=48.01 E-value=64 Score=22.93 Aligned_cols=54 Identities=9% Similarity=0.124 Sum_probs=32.3
Q ss_pred EEeCCCchhhHHHHhhccCChhHHHHHh---cCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCee
Q 013379 186 NLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK 253 (444)
Q Consensus 186 yl~~~~~~~~~~f~rdv~~~~~V~~~l~---~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~ 253 (444)
..+.++|..|... +.+|+ -.|...-++.+......+...+++.++|.+. + +|+.
T Consensus 5 ~y~~~~C~~C~~~----------~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~-~---~g~~ 61 (82)
T 1fov_A 5 IYTKETCPYCHRA----------KALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIF-I---DAQH 61 (82)
T ss_dssp EEECSSCHHHHHH----------HHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE-E---TTEE
T ss_pred EEECCCChhHHHH----------HHHHHHCCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE-E---CCEE
Confidence 3456789888765 23333 3465553333223334577788999999984 3 4654
No 423
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=45.58 E-value=80 Score=30.01 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=30.9
Q ss_pred HHcCCC-CCcEEEEEeCCCCeeeEE-E---eCCCChHHHHHHHHhhhh
Q 013379 233 TYYKLD-SIPVVLVVDPITGQKMRS-W---CGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 233 ~~y~~~-~~P~l~ii~p~tg~~v~~-~---~G~~~~~~~l~~L~~~l~ 275 (444)
+.+++. .+|.++|+++.++..... + .|..+++.+...|..+++
T Consensus 299 ~~~gi~~~~P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~F~~d~~~ 346 (350)
T 1sji_A 299 KTFKIDLFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVLS 346 (350)
T ss_dssp HHCCSCTTSCEEEEEESSSSCEEESCSSCCSCCCCHHHHHHHHHHHHT
T ss_pred hhcCCCccCCcEEEEecccccccccCCCcccccCCHHHHHHHHHHHhc
Confidence 678887 589999999876644321 3 246788888777777765
No 424
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=45.53 E-value=60 Score=25.37 Aligned_cols=62 Identities=5% Similarity=-0.077 Sum_probs=34.2
Q ss_pred EEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCC--hhH-HHHHHHcCCCCCcEEEEEeCCCCeee
Q 013379 185 VNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--SEG-KKVCTYYKLDSIPVVLVVDPITGQKM 254 (444)
Q Consensus 185 Vyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s--~eg-~~~~~~y~~~~~P~l~ii~p~tg~~v 254 (444)
|.+..++|..|..+. .+|..-.+. ..+|...-++.+. .+. ..+...|++.++|.+. + +|+.+
T Consensus 22 v~f~~~~Cp~C~~~~-~~L~~~~~~---~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~-i---~g~~i 86 (114)
T 2hze_A 22 TIFVKYTCPFCRNAL-DILNKFSFK---RGAYEIVDIKEFKPENELRDYFEQITGGKTVPRIF-F---GKTSI 86 (114)
T ss_dssp EEEECTTCHHHHHHH-HHHTTSCBC---TTSEEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEE-E---TTEEE
T ss_pred EEEEeCCChhHHHHH-HHHHHcCCC---cCceEEEEccCCCChHHHHHHHHHHhCCCCcCEEE-E---CCEEE
Confidence 334667899998763 222221111 0116665433332 122 3577889999999874 4 46654
No 425
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=44.97 E-value=17 Score=29.89 Aligned_cols=40 Identities=23% Similarity=0.149 Sum_probs=35.0
Q ss_pred HHHHhhcccccCCCHHHHHHHHHHcCC-CHHHHHHHHhcCCCC
Q 013379 12 SMVSSFLEIAVGQTAETAVQFLQATSW-KLDEAIQLFYVGNES 53 (444)
Q Consensus 12 ~~i~~F~~itt~~~~~~A~~~L~~~~w-~le~Av~~~~~~~~~ 53 (444)
+.|.+++++ |-+...|+.-|..+++ |++.|++-.+++.+.
T Consensus 5 ~~l~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d 45 (126)
T 2lbc_A 5 SSVMQLAEM--GFPLEACRKAVYFTGNMGAEVAFNWIIVHMEE 45 (126)
T ss_dssp HHHHHHHTT--SSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHHhccc
Confidence 478899999 9999999999999976 999999999886543
No 426
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=44.85 E-value=66 Score=24.96 Aligned_cols=54 Identities=9% Similarity=0.103 Sum_probs=33.2
Q ss_pred HcCCeEEEEEeC----CCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCC-hhH-HHHHHHcCCCCCcEEE
Q 013379 178 VQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDT-SEG-KKVCTYYKLDSIPVVL 244 (444)
Q Consensus 178 ~~~K~LlVyl~~----~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s-~eg-~~~~~~y~~~~~P~l~ 244 (444)
+..+ ++||..+ ++|..|... +.+|++ .|... +++. ++. ..+...++..++|.|.
T Consensus 13 ~~~~-vvvy~~g~~~~~~Cp~C~~a----------k~~L~~~~i~~~~v--di~~~~~~~~~l~~~~g~~~vP~if 75 (109)
T 1wik_A 13 NKAS-VMLFMKGNKQEAKCGFSKQI----------LEILNSTGVEYETF--DILEDEEVRQGLKTFSNWPTYPQLY 75 (109)
T ss_dssp TTSS-EEEEESSTTTCCCSSTHHHH----------HHHHHHTCSCEEEE--ESSSCHHHHHHHHHHHSCCSSCEEE
T ss_pred ccCC-EEEEEecCCCCCCCchHHHH----------HHHHHHcCCCeEEE--ECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 3444 7778775 678888764 444543 45555 5543 333 3456677888999864
No 427
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=44.02 E-value=84 Score=22.31 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=30.5
Q ss_pred EEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCC-hhHHHHHHHcCCCCCcEEE
Q 013379 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SEGKKVCTYYKLDSIPVVL 244 (444)
Q Consensus 184 lVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s-~eg~~~~~~y~~~~~P~l~ 244 (444)
++.++.++|..|..+.. +| +-+.-.|... +++. ++.......|++.++|.+.
T Consensus 3 v~~f~~~~C~~C~~~~~-~l------~~~~i~~~~v--di~~~~~~~~~~~~~g~~~vP~~~ 55 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKR-AM------ENRGFDFEMI--NVDRVPEAAEALRAQGFRQLPVVI 55 (81)
T ss_dssp EEEEECTTCHHHHHHHH-HH------HHTTCCCEEE--ETTTCHHHHHHHHHTTCCSSCEEE
T ss_pred EEEEcCCCChhHHHHHH-HH------HHCCCCeEEE--ECCCCHHHHHHHHHhCCCccCEEE
Confidence 34456778999987621 11 1122245544 6653 4545444568999999983
No 428
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=43.72 E-value=42 Score=32.62 Aligned_cols=70 Identities=9% Similarity=-0.005 Sum_probs=53.8
Q ss_pred ceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCC---CCcCeEEEc--CCCCCcccCCCCcCCChhhcCCCCce
Q 013379 366 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGS---EMKPFRLTH--AIPGATKSLDYDSKLTFEDSGLANAM 438 (444)
Q Consensus 366 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~---~~~~f~L~~--~fPrr~~~l~~~~~~Tl~e~gL~~~~ 438 (444)
...+.|+++ +...+-+|..+.+|.++...|...+++. +...|-|.- .-|++. .-.+.++||+..|+.+..
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~--~Wl~~~~~l~~y~~~~~~ 77 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKG--IWLEAGKALDYYMLRNGD 77 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGC--EECCTTSBGGGGTCCTTC
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcC--EeccCCCCHHHhCCCCCc
Confidence 457888898 7788999999999999999998887643 567788876 345543 334667899999997543
No 429
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=43.26 E-value=95 Score=22.74 Aligned_cols=70 Identities=17% Similarity=0.068 Sum_probs=41.2
Q ss_pred EeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChh-H----HHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCC
Q 013379 187 LQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE-G----KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV 261 (444)
Q Consensus 187 l~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~e-g----~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~ 261 (444)
.+.++|..|.... .+.+-+.-.|...-++....+ - ..+...++..++|.+.+ .|+. +.|+
T Consensus 17 y~~~~Cp~C~~~~-------~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~----~g~~---i~G~- 81 (92)
T 3ic4_A 17 YGLSTCPHCKRTL-------EFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK----GDKH---VLGY- 81 (92)
T ss_dssp EECTTCHHHHHHH-------HHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE----TTEE---EESC-
T ss_pred EECCCChHHHHHH-------HHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE----CCEE---EeCC-
Confidence 3556788887652 122223345666544432322 1 45667889999999876 3543 4565
Q ss_pred ChHHHHHHHH
Q 013379 262 QPESLLEDLV 271 (444)
Q Consensus 262 ~~~~~l~~L~ 271 (444)
+++++...|.
T Consensus 82 ~~~~l~~~l~ 91 (92)
T 3ic4_A 82 NEEKLKELIR 91 (92)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHhc
Confidence 7777766653
No 430
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=42.28 E-value=1.1e+02 Score=26.60 Aligned_cols=17 Identities=12% Similarity=0.090 Sum_probs=8.8
Q ss_pred CcEEEEEeCCCCeeeEEEe
Q 013379 240 IPVVLVVDPITGQKMRSWC 258 (444)
Q Consensus 240 ~P~l~ii~p~tg~~v~~~~ 258 (444)
.++.+|| + .|.+...+.
T Consensus 140 ~R~tfII-~-dG~I~~~~~ 156 (176)
T 4f82_A 140 LRYAMVI-D-GGVVKTLAV 156 (176)
T ss_dssp CCEEEEE-E-TTEEEEEEE
T ss_pred ccEEEEE-c-CCEEEEEEE
Confidence 3555555 3 565554444
No 431
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=42.21 E-value=41 Score=27.79 Aligned_cols=53 Identities=9% Similarity=-0.003 Sum_probs=34.6
Q ss_pred CchHHHHHHHHhhcCCCCCcCeEEE-cCCCCCc--ccCCCCcCCChhhcCCCCceEEE
Q 013379 387 DPIQLLWSYCYSQLEGSEMKPFRLT-HAIPGAT--KSLDYDSKLTFEDSGLANAMISV 441 (444)
Q Consensus 387 ~~l~~l~~fv~~~~~~~~~~~f~L~-~~fPrr~--~~l~~~~~~Tl~e~gL~~~~v~v 441 (444)
.||.+|.+.+..++ +|.. .|.+. ++=-|-- +.+.+...+||.++|+.+++++.
T Consensus 20 ~TL~dLV~~l~~~~-gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLt 75 (127)
T 3onh_A 20 MKLSDFVVLIREKY-SYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIIL 75 (127)
T ss_dssp CBHHHHHHHHHHHH-TCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEE
T ss_pred cCHHHHHHHHHHhc-CCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEE
Confidence 48999999987764 5543 77777 2200110 22334468999999999877643
No 432
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=41.69 E-value=48 Score=28.97 Aligned_cols=46 Identities=9% Similarity=0.027 Sum_probs=36.6
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhc
Q 013379 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 229 ~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
...+..+++...|++.|-+ +|+.+....|..+++.|+..|...+..
T Consensus 159 ~~~a~~~gv~g~Pt~~v~~--~~~~~~~~~g~~~~e~~~~~i~~~~~~ 204 (208)
T 3kzq_A 159 LSLAKSLGVNSYPSLVLQI--NDAYFPIEVDYLSTEPTLKLIRERIIE 204 (208)
T ss_dssp HHHHHHTTCCSSSEEEEEE--TTEEEEECCCSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccEEEEEE--CCEEEEeeCCCCCHHHHHHHHHHHHhc
Confidence 3456689999999998765 467776778988999999999887753
No 433
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=40.47 E-value=91 Score=30.12 Aligned_cols=103 Identities=11% Similarity=0.119 Sum_probs=53.5
Q ss_pred cccCcHHHHHHHHHHcCCeEEEEEeCCCch-hhHHHHhhccCChhHHHHH---hcCEEEEEeecCChhHHHHHHHcCCC-
Q 013379 164 MFNGSFEKAKDAASVQDKWLLVNLQSTKEF-SSHMLNRDTWANEAVSQTI---STNFIFWQVYDDTSEGKKVCTYYKLD- 238 (444)
Q Consensus 164 ~~~gs~~~A~~~A~~~~K~LlVyl~~~~~~-~~~~f~rdv~~~~~V~~~l---~~~fV~w~~~~~s~eg~~~~~~y~~~- 238 (444)
+-.-+.+.+.... ..+++++|.+...++. .++.|- ..+.+.. +..+.|..++.+ +-..++..++++
T Consensus 221 v~elt~~~~~~~~-~~~~~~~v~f~~~~~~~~~~~~~------~~~~~~~~~~~~~i~f~~id~~--~~~~~~~~~gl~~ 291 (382)
T 2r2j_A 221 VREITFENGEELT-EEGLPFLILFHMKEDTESLEIFQ------NEVARQLISEKGTINFLHADCD--KFRHPLLHIQKTP 291 (382)
T ss_dssp SEECCHHHHHHHH-TTCCCEEEEEECTTCCHHHHHHH------HHHHHHTGGGTTTSEEEEEETT--TTHHHHHHTTCCG
T ss_pred eEecChhhHHHHh-cCCCcEEEEEecCCchHHHHHHH------HHHHHHHHHhCCeeEEEEEchH--HhHHHHHHcCCCc
Confidence 3444555554443 4566676666665432 233331 1222222 234555444543 334567888886
Q ss_pred -CCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 239 -SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 239 -~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
.+|.++|++...+-......|..+++.+...|..+++
T Consensus 292 ~~~P~i~i~~~~~~y~~~~~~~~~~~~~i~~F~~d~~~ 329 (382)
T 2r2j_A 292 ADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHS 329 (382)
T ss_dssp GGCSEEEEECSSCEEECCCSGGGGSTTHHHHHHHHHHH
T ss_pred cCCCEEEEEcchhcCCCCccccccCHHHHHHHHHHHHC
Confidence 6999999875322111112344456667666666665
No 434
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=39.79 E-value=97 Score=24.46 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=44.5
Q ss_pred CcccCcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc------CEEEEEeecCC-hh---H-HHH
Q 013379 163 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST------NFIFWQVYDDT-SE---G-KKV 231 (444)
Q Consensus 163 ~~~~gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~------~fV~w~~~~~s-~e---g-~~~ 231 (444)
.|......+.+..+.+..+ ++| +..++|..|... ++.+|.+ .|... +++. ++ . ..+
T Consensus 8 ~~~~~~~~~~~~~~i~~~~-Vvv-f~~~~Cp~C~~a---------lk~~L~~~~~~~i~~~~v--did~~~~~~~~~~~l 74 (118)
T 3c1r_A 8 HMVSQETIKHVKDLIAENE-IFV-ASKTYCPYCHAA---------LNTLFEKLKVPRSKVLVL--QLNDMKEGADIQAAL 74 (118)
T ss_dssp CCSCHHHHHHHHHHHHHSS-EEE-EECSSCHHHHHH---------HHHHHTTSCCCGGGEEEE--EGGGSTTHHHHHHHH
T ss_pred cccCHHHHHHHHHHHccCc-EEE-EEcCCCcCHHHH---------HHHHHHHcCCCCCCeEEE--ECccCCChHHHHHHH
Confidence 3455566666777766665 444 455779888765 2344432 34444 4433 22 2 346
Q ss_pred HHHcCCCCCcEEEEEeCCCCeee
Q 013379 232 CTYYKLDSIPVVLVVDPITGQKM 254 (444)
Q Consensus 232 ~~~y~~~~~P~l~ii~p~tg~~v 254 (444)
...|+..++|.| ++ +|+.+
T Consensus 75 ~~~~g~~tvP~v-fi---~g~~i 93 (118)
T 3c1r_A 75 YEINGQRTVPNI-YI---NGKHI 93 (118)
T ss_dssp HHHHSCCSSCEE-EE---TTEEE
T ss_pred HHHhCCCCcCEE-EE---CCEEE
Confidence 778999999987 44 36643
No 435
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=39.42 E-value=51 Score=31.02 Aligned_cols=69 Identities=16% Similarity=-0.028 Sum_probs=46.3
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcC
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSG 433 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~g 433 (444)
.....+.|.||||+.+.-.+..+.+.++|++-|...+.=.+..-|-|.-.-+... ..-.+.+++|.+..
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~-~~wLd~~k~i~~q~ 83 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATS-KTWLDSAKEIKKQV 83 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTE-EEECCTTSBHHHHC
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCc-cchhccchhHHHhc
Confidence 3467899999999999999999999999999998876422344466543211111 11235566776653
No 436
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=39.29 E-value=70 Score=23.09 Aligned_cols=57 Identities=7% Similarity=-0.054 Sum_probs=32.6
Q ss_pred EEEEeCCCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCCh--hHHHHHHHcCC-----CCCcEEEEEeCCCCee
Q 013379 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTS--EGKKVCTYYKL-----DSIPVVLVVDPITGQK 253 (444)
Q Consensus 184 lVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s~--eg~~~~~~y~~-----~~~P~l~ii~p~tg~~ 253 (444)
++..+.++|..|... +.+|++ .|-...++.... ....+...++. .++|.+.| +|+.
T Consensus 6 v~ly~~~~Cp~C~~~----------~~~L~~~~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i----~g~~ 71 (89)
T 3msz_A 6 VKIYTRNGCPYCVWA----------KQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI----DDEH 71 (89)
T ss_dssp EEEEECTTCHHHHHH----------HHHHHHTTCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE----TTEE
T ss_pred EEEEEcCCChhHHHH----------HHHHHHcCCCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE----CCEE
Confidence 344566789888765 344443 354443333221 11346677777 89999954 4654
Q ss_pred e
Q 013379 254 M 254 (444)
Q Consensus 254 v 254 (444)
+
T Consensus 72 i 72 (89)
T 3msz_A 72 I 72 (89)
T ss_dssp E
T ss_pred E
Confidence 3
No 437
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=38.94 E-value=18 Score=24.97 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=27.8
Q ss_pred HHHHHhhcccccCCCHHHH--HHHHHHcCCCHHHHHHHH
Q 013379 11 QSMVSSFLEIAVGQTAETA--VQFLQATSWKLDEAIQLF 47 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A--~~~L~~~~w~le~Av~~~ 47 (444)
.+.|.|.+++ |-+.+-+ .++|+..++|+..|++..
T Consensus 11 ~~al~qMl~M--GF~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 11 IESLSQMLSM--GFSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHTT--TCCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc--CCCccccHHHHHHHHccCCHHHHHHHh
Confidence 4578788888 6654444 699999999999999875
No 438
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=38.55 E-value=69 Score=23.57 Aligned_cols=48 Identities=6% Similarity=-0.011 Sum_probs=29.5
Q ss_pred EEEEeCCCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCC-hh-HHHHHHHcCCCCCcEE
Q 013379 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDT-SE-GKKVCTYYKLDSIPVV 243 (444)
Q Consensus 184 lVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s-~e-g~~~~~~y~~~~~P~l 243 (444)
++.++.++|..|+.. +.+|++ .|... +++. ++ ...+...++..++|.+
T Consensus 8 v~ly~~~~C~~C~~~----------~~~L~~~~i~~~~~--di~~~~~~~~~l~~~~~~~~vP~l 60 (92)
T 2khp_A 8 VIIYTRPGCPYCARA----------KALLARKGAEFNEI--DASATPELRAEMQERSGRNTFPQI 60 (92)
T ss_dssp EEEEECTTCHHHHHH----------HHHHHHTTCCCEEE--ESTTSHHHHHHHHHHHTSSCCCEE
T ss_pred EEEEECCCChhHHHH----------HHHHHHcCCCcEEE--ECCCCHHHHHHHHHHhCCCCcCEE
Confidence 344566789888765 344443 45555 5543 22 3456778899999965
No 439
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=37.53 E-value=98 Score=25.47 Aligned_cols=66 Identities=9% Similarity=0.185 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeC----CCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCChhHH-HHHHHcCCC
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGK-KVCTYYKLD 238 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~----~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s~eg~-~~~~~y~~~ 238 (444)
....+.+....+..+ +.||..+ ++|..|.. ++.+|++ .|...-++. .++.. .+...++..
T Consensus 22 ~~~~~~v~~~i~~~~-Vvvy~ks~~~~~~Cp~C~~----------ak~~L~~~gv~y~~vdI~~-d~~~~~~L~~~~G~~ 89 (135)
T 2wci_A 22 STTIEKIQRQIAENP-ILLYMKGSPKLPSCGFSAQ----------AVQALAACGERFAYVDILQ-NPDIRAELPKYANWP 89 (135)
T ss_dssp CHHHHHHHHHHHHCS-EEEEESBCSSSBSSHHHHH----------HHHHHHTTCSCCEEEEGGG-CHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhccCC-EEEEEEecCCCCCCccHHH----------HHHHHHHcCCceEEEECCC-CHHHHHHHHHHHCCC
Confidence 356666666666665 6678876 67777765 4555654 355553332 23333 355556788
Q ss_pred CCcEEE
Q 013379 239 SIPVVL 244 (444)
Q Consensus 239 ~~P~l~ 244 (444)
++|.|.
T Consensus 90 tvP~Vf 95 (135)
T 2wci_A 90 TFPQLW 95 (135)
T ss_dssp SSCEEE
T ss_pred CcCEEE
Confidence 999875
No 440
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=37.31 E-value=94 Score=29.20 Aligned_cols=69 Identities=16% Similarity=-0.028 Sum_probs=49.1
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 435 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~ 435 (444)
...+.+.|.|+|| .+.-.+..+.++++|++-|...+.=....-|-|... .... ....+.+++|.+.+..
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~-~~~~-~~wL~~~~~i~~q~~~ 88 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDT-VAWLKMDKKVLDHDVS 88 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEE-ETTE-EEECCTTSBGGGSSCC
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEE-eCCc-CeeCCCccCHHHcCCC
Confidence 3568899999999 688999999999999999888763223455766554 2222 2234677888887654
No 441
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=36.17 E-value=36 Score=32.56 Aligned_cols=45 Identities=18% Similarity=0.373 Sum_probs=34.7
Q ss_pred cCCcchHHHHHHhhcccc------cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013379 4 VLSANDKQSMVSSFLEIA------VGQTAETAVQFLQATSWKLDEAIQLFYV 49 (444)
Q Consensus 4 ~l~~~~~~~~i~~F~~it------t~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (444)
.|++++ ++.|++|.+.- -..|...-.+||.+++||++.|...+-+
T Consensus 34 ~lt~~q-~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~~ 84 (320)
T 3q8g_A 34 NLTKEQ-EEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVE 84 (320)
T ss_dssp CCCHHH-HHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 466666 44777777652 2367889999999999999999998844
No 442
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}
Probab=36.10 E-value=1.2e+02 Score=27.39 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=36.5
Q ss_pred EEEEEeecCChhHHHHHHHcCC----CCCcEEEEEeCCCCeeeEEEeCCCChHH--HHHHHHhhhh
Q 013379 216 FIFWQVYDDTSEGKKVCTYYKL----DSIPVVLVVDPITGQKMRSWCGMVQPES--LLEDLVPFMD 275 (444)
Q Consensus 216 fV~w~~~~~s~eg~~~~~~y~~----~~~P~l~ii~p~tg~~v~~~~G~~~~~~--~l~~L~~~l~ 275 (444)
+.|.-++.+ +-..++..|++ ..+|.|+|++. .+. .....+.++.+. +...+..+++
T Consensus 169 ~~F~~~d~~--~~~~~~~~fgl~~~~~~~P~v~i~~~-~~~-ky~~~~~~t~~~~~i~~F~~~~~~ 230 (252)
T 2h8l_A 169 LNFAVASRK--TFSHELSDFGLESTAGEIPVVAIRTA-KGE-KFVMQEEFSRDGKALERFLQDYFD 230 (252)
T ss_dssp CEEEEEETT--TTHHHHGGGTCCCCSCSSCEEEEECT-TSC-EEECCSCCCTTSHHHHHHHHHHHH
T ss_pred EEEEEEchH--HHHHHHHHcCCCCccCCCCEEEEEeC-cCc-EecCCcccCcchHHHHHHHHHHHC
Confidence 555544544 22347888888 36999999985 454 334556677776 7777777765
No 443
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=35.55 E-value=2e+02 Score=27.54 Aligned_cols=93 Identities=14% Similarity=0.097 Sum_probs=50.8
Q ss_pred CeEEEEEeCCCchhhHHHHhhccCChhHHHHHhc--CEEEEEeecCC-hhHHH-HHHHcCCC-CCcEEEEEeCCCCee-e
Q 013379 181 KWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDT-SEGKK-VCTYYKLD-SIPVVLVVDPITGQK-M 254 (444)
Q Consensus 181 K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~--~fV~w~~~~~s-~eg~~-~~~~y~~~-~~P~l~ii~p~tg~~-v 254 (444)
++++|.+.+.++..+..+-.. + ..|.+-.+. .+.|..++.+. +.... +...+++. .+|.++|+++.++.. .
T Consensus 248 ~~~~~~f~~~~~~~~~~~~~~-l--~~vA~~~~~~~ki~F~~id~~~~~~~l~~~~~~fgl~~~~P~~~i~~~~~~~~~~ 324 (367)
T 3us3_A 248 GIHIVAFAEEADPDGYEFLEI-L--KSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVW 324 (367)
T ss_dssp TEEEEEECCTTSHHHHHHHHH-H--HHHHHHTTTCTTCCEEEECGGGCTTTHHHHHHHHTCCTTSCEEEEEETTTCCEEE
T ss_pred CcEEEEEEcCCChhHHHHHHH-H--HHHHHHcCCCCceEEEEECCccchhHHHHHHHhcCCCCCCCeEEEEeccccccee
Confidence 445555555544444444221 1 123232333 35444344433 21222 24567776 799999999876632 2
Q ss_pred EEEeC---CCChHHHHHHHHhhhhc
Q 013379 255 RSWCG---MVQPESLLEDLVPFMDG 276 (444)
Q Consensus 255 ~~~~G---~~~~~~~l~~L~~~l~~ 276 (444)
..+.+ .++++.+...|..+++-
T Consensus 325 y~~~~~~~~~t~~~i~~F~~~~~~G 349 (367)
T 3us3_A 325 MEMDDEEDLPSAEELEDWLEDVLEG 349 (367)
T ss_dssp CCCCTTSCCCCHHHHHHHHHHHHHT
T ss_pred ecCCcccccCCHHHHHHHHHHHHcC
Confidence 22443 57899888888888763
No 444
>3dwa_A SUBB, subtilase cytotoxin, subunit B; HET: 1PE; 2.08A {Escherichia coli} PDB: 3dwp_A* 3dwq_A*
Probab=33.76 E-value=77 Score=25.84 Aligned_cols=45 Identities=11% Similarity=0.240 Sum_probs=37.4
Q ss_pred ccCcHHHHHHHHH---HcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEE
Q 013379 165 FNGSFEKAKDAAS---VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQ 220 (444)
Q Consensus 165 ~~gs~~~A~~~A~---~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~ 220 (444)
+.-+|++-+++|+ ..++.+=||+.. +||.++.+...+..|-|+=.
T Consensus 53 ~~~~Fd~~~~~A~YyYtTG~~vrvY~~~-----------nVWtdp~F~~~fS~NeLv~i 100 (126)
T 3dwa_A 53 WGASFSTLYNQALYFYTTGQPVRIYYEP-----------GVWTYPPFVKALTSNALVGL 100 (126)
T ss_dssp SGGGHHHHHHHHHHHHHHCCEEEEEEET-----------TCCCCHHHHHHSCSCEEEEE
T ss_pred ccccHHHHHHHhHhhhhcCCcEEEEEec-----------CcccChhHhhhhcccceEEE
Confidence 4567888888886 899999999987 59999999999988765543
No 445
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=32.77 E-value=92 Score=22.74 Aligned_cols=49 Identities=6% Similarity=0.040 Sum_probs=30.7
Q ss_pred EEEEeCCCchhhHHHHhhccCChhHHHHHh---cCEEEEEeecCChhHHHHHHHc-CCCCCcEEE
Q 013379 184 LVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYY-KLDSIPVVL 244 (444)
Q Consensus 184 lVyl~~~~~~~~~~f~rdv~~~~~V~~~l~---~~fV~w~~~~~s~eg~~~~~~y-~~~~~P~l~ 244 (444)
++..+.++|..|... +.+|+ -.|... +++......+...+ ++.++|.+.
T Consensus 8 v~~y~~~~C~~C~~~----------~~~L~~~~i~~~~v--dv~~~~~~~l~~~~~~~~~vP~l~ 60 (89)
T 2klx_A 8 IILYTRPNCPYCKRA----------RDLLDKKGVKYTDI--DASTSLRQEMVQRANGRNTFPQIF 60 (89)
T ss_dssp EEEESCSCCTTTHHH----------HHHHHHHTCCEEEE--CSCHHHHHHHHHHHHSSCCSCEEE
T ss_pred EEEEECCCChhHHHH----------HHHHHHcCCCcEEE--ECCHHHHHHHHHHhCCCCCcCEEE
Confidence 344566789888865 33333 345544 56522234577788 999999985
No 446
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=32.74 E-value=26 Score=32.01 Aligned_cols=45 Identities=22% Similarity=0.183 Sum_probs=28.8
Q ss_pred cCCcchHHHHHHhhccccc---------CCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013379 4 VLSANDKQSMVSSFLEIAV---------GQTAETAVQFLQATSWKLDEAIQLFYV 49 (444)
Q Consensus 4 ~l~~~~~~~~i~~F~~itt---------~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (444)
.||+.+++ .|++|.+... ..|.....+||.+++||++.|...+-.
T Consensus 3 ~ls~~~~~-~l~~lr~~l~~~~~~~~~~~~dd~~LlRFLra~k~dv~~A~~~l~~ 56 (262)
T 1r5l_A 3 HMSPLLQP-GLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKN 56 (262)
T ss_dssp ------CT-THHHHHHHHHHHTCCCSSSCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CccHHHHH-HHHHHHHHHHhCCcccCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46666643 6666654321 248899999999999999999987643
No 447
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=32.33 E-value=1.3e+02 Score=31.33 Aligned_cols=69 Identities=12% Similarity=-0.029 Sum_probs=48.2
Q ss_pred CceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC
Q 013379 365 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 435 (444)
Q Consensus 365 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~ 435 (444)
..+.|.|.|+|| .+.-.+..+.++++|++-|...+.=....-|-|.-.-+... ....+.+++|.+.++.
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~-~~WLd~~k~i~~q~~~ 71 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGD-LTWIKLYKKVMQQDVK 71 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSC-EEECCTTSBGGGSCBC
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcc-hhHhhccccHHHhccc
Confidence 467899999999 57788899999999999988876322344566654223322 1234678888887654
No 448
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=31.35 E-value=10 Score=33.81 Aligned_cols=56 Identities=16% Similarity=0.111 Sum_probs=0.0
Q ss_pred EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChh
Q 013379 368 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFE 430 (444)
Q Consensus 368 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~ 430 (444)
.|-||..+|+.+.-....++||.+|-.-|... .+.+.....|+. -.+. | +.+.||.
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~k-eGIP~~qQRLIf--~GK~--L--eD~~TLs 57 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQD-MGFEIDMMTLVN--NGFI--A--PNTELVT 57 (189)
T ss_dssp ---------------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHH-hCcChhHEEEEe--cCeE--C--CCCCccc
Confidence 47789999999888899999999999998875 455666666764 3553 4 3356777
No 449
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=31.31 E-value=56 Score=28.15 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=32.4
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 229 ~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
...+..+++...|+++| +|+.+-...|..+.+.|...|...++
T Consensus 142 ~~~a~~~gv~GtPtfvv----ng~~~v~~~Ga~~~e~~~~~i~~ll~ 184 (185)
T 3feu_A 142 KMLSEKSGISSVPTFVV----NGKYNVLIGGHDDPKQIADTIRYLLE 184 (185)
T ss_dssp HHHHHHHTCCSSSEEEE----TTTEEECGGGCSSHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCccCEEEE----CCEEEEecCCCCCHHHHHHHHHHHHh
Confidence 44567899999999986 56654344788889999888876654
No 450
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.13 E-value=46 Score=23.15 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=30.0
Q ss_pred HHHHHhhcccccCCCHHHHHHHHHHcCC-CHHHHHHHHh
Q 013379 11 QSMVSSFLEIAVGQTAETAVQFLQATSW-KLDEAIQLFY 48 (444)
Q Consensus 11 ~~~i~~F~~itt~~~~~~A~~~L~~~~w-~le~Av~~~~ 48 (444)
...+.+.+++ |.+.+.|..-|+.+|. .|+.|++-..
T Consensus 10 ~qmlq~L~eM--GFd~erae~Alk~Tg~~Gle~AmewL~ 46 (54)
T 2cos_A 10 RQMLQELVNA--GCDQEMAGRALKQTGSRSIEAALEYIS 46 (54)
T ss_dssp HHHHHHHHHH--HCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3368889999 9999999999999885 5999987554
No 451
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}
Probab=31.06 E-value=2.8e+02 Score=24.63 Aligned_cols=92 Identities=10% Similarity=0.101 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEe
Q 013379 168 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD 247 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~ 247 (444)
+-+++...-.....+++.|+.+.....+..| ..+.+-+++++.|+... + ..++..|++.. |.|.+.-
T Consensus 13 s~~~~~~~l~~~~v~vvgff~~~~~~~~~~f-------~~~A~~lr~~~~F~~~~--~---~~v~~~~~~~~-p~i~~fk 79 (252)
T 2h8l_A 13 TEEEFKKFISDKDASIVGFFDDSFSEAHSEF-------LKAASNLRDNYRFAHTN--V---ESLVNEYDDNG-EGIILFR 79 (252)
T ss_dssp SHHHHHHHHTSSSCEEEEEESCTTSHHHHHH-------HHHHHHTTTTSCEEEEC--C---HHHHHHHCSSS-EEEEEEC
T ss_pred CHHHHHHHhhcCCeEEEEEECCCCChHHHHH-------HHHHHhcccCcEEEEEC--h---HHHHHHhCCCC-CcEEEEc
Confidence 4455444344455566667766544555555 35666777778777542 2 34788899986 9998887
Q ss_pred CCC-----CeeeEEE-eCCCChHHHHHHHHh
Q 013379 248 PIT-----GQKMRSW-CGMVQPESLLEDLVP 272 (444)
Q Consensus 248 p~t-----g~~v~~~-~G~~~~~~~l~~L~~ 272 (444)
|.. .+..... .|..+.+++...+..
T Consensus 80 ~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~ 110 (252)
T 2h8l_A 80 PSHLTNKFEDKTVAYTEQKMTSGKIKKFIQE 110 (252)
T ss_dssp CGGGCCTTSCSEEECCCSSCCHHHHHHHHHH
T ss_pred chhhcccccccccccCCCCcCHHHHHHHHHh
Confidence 621 1222245 687788877776654
No 452
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=30.72 E-value=1.7e+02 Score=22.64 Aligned_cols=66 Identities=11% Similarity=0.144 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHcCCeEEEEEeC----CCchhhHHHHhhccCChhHHHHHhc---CEEEEEeecCChhHH-HHHHHcCCCC
Q 013379 168 SFEKAKDAASVQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGK-KVCTYYKLDS 239 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~----~~~~~~~~f~rdv~~~~~V~~~l~~---~fV~w~~~~~s~eg~-~~~~~y~~~~ 239 (444)
...+.+....+.++ ++||..+ +.|..|.. ++++|++ .|..+-++. .++.. .+....+..+
T Consensus 6 ~~~~~v~~~i~~~~-Vvvy~k~t~~~p~Cp~C~~----------ak~~L~~~gi~~~~~dI~~-~~~~~~~l~~~~g~~t 73 (109)
T 3ipz_A 6 QLKDTLEKLVNSEK-VVLFMKGTRDFPMCGFSNT----------VVQILKNLNVPFEDVNILE-NEMLRQGLKEYSNWPT 73 (109)
T ss_dssp HHHHHHHHHHTSSS-EEEEESBCSSSBSSHHHHH----------HHHHHHHTTCCCEEEEGGG-CHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHccCC-EEEEEecCCCCCCChhHHH----------HHHHHHHcCCCcEEEECCC-CHHHHHHHHHHHCCCC
Confidence 34455555666655 6678776 46777765 4556654 355553332 33433 3555667889
Q ss_pred CcEEEE
Q 013379 240 IPVVLV 245 (444)
Q Consensus 240 ~P~l~i 245 (444)
+|.|.|
T Consensus 74 vP~ifi 79 (109)
T 3ipz_A 74 FPQLYI 79 (109)
T ss_dssp SCEEEE
T ss_pred CCeEEE
Confidence 997753
No 453
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=30.07 E-value=1.5e+02 Score=27.33 Aligned_cols=67 Identities=12% Similarity=-0.009 Sum_probs=46.7
Q ss_pred eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCC
Q 013379 367 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 435 (444)
Q Consensus 367 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~ 435 (444)
+.|.|.|+|| .+.-.+..+.++++|++-|...+.=.+..-|-|.-.-+... ..-.+.+++|.+.+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~-~~wLd~~~~l~~q~~~ 68 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGF-STWLKLNKKVTAQDVR 68 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSC-EEECCSSSBGGGSCBC
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCc-eeecccccCHHhhccC
Confidence 5789999999 57788999999999999988876322344577764323221 1224677888887654
No 454
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=29.63 E-value=1.4e+02 Score=20.53 Aligned_cols=66 Identities=15% Similarity=0.208 Sum_probs=38.6
Q ss_pred EEEeCCCchhhHHHHhhccCChhHHHHHh---cCEEEEEeecCC-hhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCC
Q 013379 185 VNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDT-SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM 260 (444)
Q Consensus 185 Vyl~~~~~~~~~~f~rdv~~~~~V~~~l~---~~fV~w~~~~~s-~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~ 260 (444)
+.+..++|..|... ..+|+ =.|... +++. ++.......|++..+|.+.+ .|+. +.|.
T Consensus 4 ~~y~~~~C~~C~~~----------~~~l~~~~i~~~~~--di~~~~~~~~~~~~~~~~~vP~l~~----~g~~---~~g~ 64 (75)
T 1r7h_A 4 TLYTKPACVQCTAT----------KKALDRAGLAYNTV--DISLDDEARDYVMALGYVQAPVVEV----DGEH---WSGF 64 (75)
T ss_dssp EEEECTTCHHHHHH----------HHHHHHTTCCCEEE--ETTTCHHHHHHHHHTTCBCCCEEEE----TTEE---EESC
T ss_pred EEEeCCCChHHHHH----------HHHHHHcCCCcEEE--ECCCCHHHHHHHHHcCCCccCEEEE----CCeE---EcCC
Confidence 44567789888765 33333 245554 5543 33334445799999999873 3553 4564
Q ss_pred CChHHHHHHH
Q 013379 261 VQPESLLEDL 270 (444)
Q Consensus 261 ~~~~~~l~~L 270 (444)
+++++...|
T Consensus 65 -~~~~l~~~l 73 (75)
T 1r7h_A 65 -RPERIKQLQ 73 (75)
T ss_dssp -CHHHHHHHH
T ss_pred -CHHHHHHHH
Confidence 566555443
No 455
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=28.90 E-value=51 Score=30.74 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=33.5
Q ss_pred cCCcchHHHHHHhhcccc------cCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 013379 4 VLSANDKQSMVSSFLEIA------VGQTAETAVQFLQATSWKLDEAIQLFY 48 (444)
Q Consensus 4 ~l~~~~~~~~i~~F~~it------t~~~~~~A~~~L~~~~w~le~Av~~~~ 48 (444)
.|++.+ ++.|++|.+.. -..|.....+||.+++||++.|...+-
T Consensus 25 ~l~~~q-~~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~ 74 (296)
T 1aua_A 25 NLDSAQ-EKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFE 74 (296)
T ss_dssp TCCTTH-HHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence 456666 55787886532 235789999999999999999988874
No 456
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=28.88 E-value=37 Score=29.16 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=27.2
Q ss_pred HHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHH
Q 013379 10 KQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLF 47 (444)
Q Consensus 10 ~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~ 47 (444)
+..++...++. ...+.+.+...|..+++|++.|+...
T Consensus 102 R~~K~~eL~s~-G~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 102 RRRKVQELQSL-GFGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHHHHT-TCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHhc-CCchHHHHHHHHHHcCCcHHHHHHHH
Confidence 34466677777 55677888888888888888887664
No 457
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10
Probab=28.49 E-value=1.6e+02 Score=25.40 Aligned_cols=56 Identities=11% Similarity=0.033 Sum_probs=26.6
Q ss_pred cCCeEEEEEeC-CCchhhH--HHHhhccCChhHHHH-HhcCE-EEEEeecCChhHH-HHHHHcCC
Q 013379 179 QDKWLLVNLQS-TKEFSSH--MLNRDTWANEAVSQT-ISTNF-IFWQVYDDTSEGK-KVCTYYKL 237 (444)
Q Consensus 179 ~~K~LlVyl~~-~~~~~~~--~f~rdv~~~~~V~~~-l~~~f-V~w~~~~~s~eg~-~~~~~y~~ 237 (444)
.+||++||.+- ..++-|. .++. . ++...+| -..+. .+++++.+++... .++..+++
T Consensus 42 ~gk~vVL~fyP~~fTp~Ct~~e~~~-f--~~~~~~f~~~~g~~~V~gvS~D~~~~~~~~~~~~~~ 103 (182)
T 1xiy_A 42 NNKKILLISLPGAFTPTCSTKMIPG-Y--EEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDI 103 (182)
T ss_dssp TTCEEEEEECSCTTCHHHHHTHHHH-H--HHTHHHHHTTSCCSEEEEEESSCHHHHHHHHHHTTC
T ss_pred CCCcEEEEEeCCCCCCCCCHHHHHH-H--HHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCC
Confidence 35676666653 3455555 1211 0 1223334 33455 4666677666542 34444443
No 458
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=28.03 E-value=69 Score=26.80 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=36.8
Q ss_pred ccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhh
Q 013379 202 TWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM 274 (444)
Q Consensus 202 v~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l 274 (444)
.+.++.+.+.|+. ....++.++|.+.|+++| +|+.+-...|..+.++|++.+...+
T Consensus 126 ~~~s~~~~~~v~~-------------~~~~a~~~gv~gTPtfiI----NGky~v~~~~~~s~e~~~~~i~~Ll 181 (184)
T 4dvc_A 126 AYNGFAVDSMVHR-------------FDKQFQDSGLTGVPAVVV----NNRYLVQGQSAKSLDEYFDLVNYLL 181 (184)
T ss_dssp HHTSHHHHHHHHH-------------HHHHHHHHTCCSSSEEEE----TTTEEECGGGCSSHHHHHHHHHHHT
T ss_pred HHhCHHHHHHHHH-------------HHHHHHHcCCCcCCEEEE----CCEEeeCCcCCCCHHHHHHHHHHHH
Confidence 3456666666652 245678899999999875 5764433345667888887766544
No 459
>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1
Probab=27.38 E-value=33 Score=30.43 Aligned_cols=72 Identities=7% Similarity=-0.043 Sum_probs=50.9
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii 246 (444)
+++.+.+...++.+|+++|++-.-.- +=.++.-.+|| +++=.++.--....+...++.+++...|.+++|
T Consensus 43 ~~L~~iv~~ik~~gK~vivh~DlI~G---------Ls~d~~ai~fL-~~~~pdGIIsTk~~~i~~Akk~GL~tIqR~Fli 112 (188)
T 1vkf_A 43 LNLKFHLKILKDRGKTVFVDMDFVNG---------LGEGEEAILFV-KKAGADGIITIKPKNYVVAKKNGIPAVLRFFAL 112 (188)
T ss_dssp TTHHHHHHHHHHTTCEEEEEGGGEET---------CCSSHHHHHHH-HHHTCSEEEESCHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHHHHHHHHHCCCeEEEecCcccc---------cCCCHHHHHHH-HhcCCCEEEcCcHHHHHHHHHcCCEEeeEEEEE
Confidence 46999999999999999997554211 11355666777 433333333445777888999999999999999
Q ss_pred eC
Q 013379 247 DP 248 (444)
Q Consensus 247 ~p 248 (444)
|-
T Consensus 113 Ds 114 (188)
T 1vkf_A 113 DS 114 (188)
T ss_dssp SH
T ss_pred Ee
Confidence 84
No 460
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=26.83 E-value=88 Score=28.07 Aligned_cols=47 Identities=6% Similarity=0.128 Sum_probs=34.3
Q ss_pred HHHHHH-cCCCCCcEEEEEeCCCCeee-----EEEeCCCChHHHHHHHHhhhhc
Q 013379 229 KKVCTY-YKLDSIPVVLVVDPITGQKM-----RSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 229 ~~~~~~-y~~~~~P~l~ii~p~tg~~v-----~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
...+.. +++...|+++|+++ +|+.+ ..+.|..+.+.|...|...+..
T Consensus 160 ~~~a~~~~GV~GtPtfvv~~~-nG~~~~Ga~~~~~~G~~~~e~l~~~I~~~l~~ 212 (226)
T 3f4s_A 160 KSLAINKLGITAVPIFFIKLN-DDKSYIEHNKVKHGGYKELKYFTNVIDKLYGK 212 (226)
T ss_dssp HHHHHHHHCCCSSCEEEEEEC-CTTCCCCGGGGEEESCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCEEEEEcC-CCEEeeCCCCcccccccCHHHHHHHHHHHHhc
Confidence 345677 99999999999763 56543 2345666699999988887753
No 461
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=25.54 E-value=15 Score=33.38 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=0.0
Q ss_pred CCceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEcCCCCCcccCCCCcCCChhhcCCCCce
Q 013379 364 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAM 438 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPrr~~~l~~~~~~Tl~e~gL~~~~ 438 (444)
...+.|.| -.+|+.+..+...+++++.|++..... .+.+...+++.- -++. + ..+.|.+++|+..+.
T Consensus 19 ~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcER-qGLs~~siRFLF--DGqR--I--~dddTPadL~MEDGD 85 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR-QGKEMDSLRFLY--DGIR--I--QADQTPEDLDMEDND 85 (227)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHH-hCCCccceEEEE--CCEe--c--CCCCCHHHcCCCCCC
Confidence 45677888 569999999999999999999865443 244444444443 2443 3 457899999998543
No 462
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=25.20 E-value=90 Score=26.45 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=29.4
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 229 ~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
...+..+++...|+++| +|+. +.|..+++.|...|...+.
T Consensus 139 ~~~a~~~gv~GtPt~vv----nG~~---~~G~~~~~~l~~~i~~~~~ 178 (186)
T 3bci_A 139 KKIAKDNHIKTTPTAFI----NGEK---VEDPYDYESYEKLLKDKIK 178 (186)
T ss_dssp HHHHHHTTCCSSSEEEE----TTEE---CSCTTCHHHHHHHHHC---
T ss_pred HHHHHHcCCCCCCeEEE----CCEE---cCCCCCHHHHHHHHHHHHH
Confidence 35677899999999976 4764 4688889988888877664
No 463
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=24.92 E-value=90 Score=26.55 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=30.5
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhc
Q 013379 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 276 (444)
Q Consensus 229 ~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~ 276 (444)
...+..+++...|++ ||+ |+.+ +.|..+.+.|...|...+..
T Consensus 140 ~~~a~~~gv~gtPt~-vin---g~~~--~~g~~~~~~l~~~i~~~l~~ 181 (195)
T 2znm_A 140 QKLTEQYRIDSTPTV-IVG---GKYR--VIFNNGFDGGVHTIKELVAK 181 (195)
T ss_dssp HHHHHHTTCCSSSEE-EET---TTEE--ECCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCeE-EEC---CEEE--EcCCCCHHHHHHHHHHHHHH
Confidence 456778999999995 454 6532 46777788888888877653
No 464
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=24.13 E-value=28 Score=28.00 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=33.0
Q ss_pred cCCcchHHHHHHhhcccccCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 013379 4 VLSANDKQSMVSSFLEIAVGQTAETAVQFLQATSWKLDEAIQLFY 48 (444)
Q Consensus 4 ~l~~~~~~~~i~~F~~itt~~~~~~A~~~L~~~~w~le~Av~~~~ 48 (444)
.|..++.-+++.++..+ ...+++.|+.+|+.| -..|..+|-
T Consensus 48 slpp~Ql~eiL~qmK~~-~~~nP~~a~~LL~q~---PQLAyAl~Q 88 (109)
T 2l9b_A 48 KKPKEVQLKFLQKFQEW-TRAHPEDAASLLELC---PQLSFVTAE 88 (109)
T ss_dssp TSCHHHHHHHHHHHHHH-HHHCHHHHHHHHHHC---HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH-HHhCHHHHHHHHHHC---chHHHHHHH
Confidence 56778888899999999 889999999999985 455555543
No 465
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=23.83 E-value=1.1e+02 Score=26.84 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=33.4
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 229 ~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
...+..+++...|+++| +|+. +.|..+.+.|...|...+...
T Consensus 153 ~~~a~~~gV~gtPtfvv----nG~~---~~G~~~~e~l~~~i~~~~~~~ 194 (202)
T 3gha_A 153 SDLNQKMNIQATPTIYV----NDKV---IKNFADYDEIKETIEKELKGK 194 (202)
T ss_dssp HHHHHHTTCCSSCEEEE----TTEE---CSCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCcCCEEEE----CCEE---ecCCCCHHHHHHHHHHHHHhh
Confidence 45677899999999987 4664 568889999999888877644
No 466
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=23.62 E-value=93 Score=23.64 Aligned_cols=45 Identities=13% Similarity=0.299 Sum_probs=34.5
Q ss_pred CCcchHHHH---HHhhcccccC--CCHHHHHHHHHHcCCCHHHHHHHHhcC
Q 013379 5 LSANDKQSM---VSSFLEIAVG--QTAETAVQFLQATSWKLDEAIQLFYVG 50 (444)
Q Consensus 5 l~~~~~~~~---i~~F~~itt~--~~~~~A~~~L~~~~w~le~Av~~~~~~ 50 (444)
|+..++..+ |++..+| -| +.+.+-+...-++++|++.|++.+|+.
T Consensus 26 Ls~~d~arL~SCLd~iR~V-lGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 26 LSEIDQARLYSCLDHMREV-LGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHH-TTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH-HcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 444443322 5688888 55 378888999999999999999999985
No 467
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=23.42 E-value=60 Score=18.89 Aligned_cols=17 Identities=47% Similarity=0.429 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhHHHhh
Q 013379 308 ENEELLQALAASMETIK 324 (444)
Q Consensus 308 qde~~~~al~~sl~~~~ 324 (444)
++++++.|++-|+-+..
T Consensus 3 EeEEl~LAlAlS~sEae 19 (26)
T 2d3g_P 3 EEEELQLALALSQSEAE 19 (26)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45557888887776543
No 468
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=23.34 E-value=43 Score=26.28 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.8
Q ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013379 22 VGQTAETAVQFLQATSWKLDEAIQLFYV 49 (444)
Q Consensus 22 t~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (444)
-..+++.|+++| +|||.|.+.|+.
T Consensus 70 deL~e~q~Rqll----fDle~aY~~F~~ 93 (96)
T 2j9u_A 70 DTLTETQIRELL----FDLELAYKSFYA 93 (96)
T ss_dssp CBCCHHHHHHHH----HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHH----HHHHHHHHHHHH
Confidence 345899999999 789999999985
No 469
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=23.19 E-value=43 Score=26.59 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013379 23 GQTAETAVQFLQATSWKLDEAIQLFYV 49 (444)
Q Consensus 23 ~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (444)
..+++.|+++| +|||.|.+.|+.
T Consensus 76 eL~e~q~Rqll----fDle~aY~~F~~ 98 (102)
T 2j9w_A 76 ELDDSQVRQML----FDLESAYNAFNR 98 (102)
T ss_dssp BCCHHHHHHHH----HHHHHHHHHHHH
T ss_pred cCCHHHHHHHH----HHHHHHHHHHHH
Confidence 35899999999 789999999985
No 470
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=23.12 E-value=1.1e+02 Score=27.06 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=32.8
Q ss_pred HHH-HHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhhcC
Q 013379 230 KVC-TYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 277 (444)
Q Consensus 230 ~~~-~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~~~ 277 (444)
..+ ..+++...|+++| +|+. +.|..+.+.|...|...+..+
T Consensus 158 ~~a~~~~GV~GtPtfvv----ng~~---~~G~~~~e~l~~~i~~~~~~~ 199 (205)
T 3gmf_A 158 DEAINQYNVSGTPSFMI----DGIL---LAGTHDWASLRPQILARLNEG 199 (205)
T ss_dssp HHHHHHHCCCSSSEEEE----TTEE---CTTCCSHHHHHHHHHHHHTC-
T ss_pred HHHHHHcCCccCCEEEE----CCEE---EeCCCCHHHHHHHHHHHhhcc
Confidence 455 7899999999986 4663 679999999999998887765
No 471
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=23.05 E-value=1.4e+02 Score=31.67 Aligned_cols=47 Identities=13% Similarity=-0.027 Sum_probs=38.6
Q ss_pred ceEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEc
Q 013379 366 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTH 412 (444)
Q Consensus 366 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~ 412 (444)
.+.+.|.|+||+...-.+..+.++++|++.|..++.=.....|.|..
T Consensus 263 ~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 263 PIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred ceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 36789999999999999999999999999998876423345677765
No 472
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=22.82 E-value=2.4e+02 Score=22.34 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHcCCeEEEEEeC----CCchhhHHHHhhccCChhHHHHHhc----CEEEEEeecCC-hhHHH-HHHHcCC
Q 013379 168 SFEKAKDAASVQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIST----NFIFWQVYDDT-SEGKK-VCTYYKL 237 (444)
Q Consensus 168 s~~~A~~~A~~~~K~LlVyl~~----~~~~~~~~f~rdv~~~~~V~~~l~~----~fV~w~~~~~s-~eg~~-~~~~y~~ 237 (444)
...+.++...++.+ ++||..+ +.|..|.. ++++|++ .|..+ +++. ++... +....+.
T Consensus 8 ~~~~~v~~~i~~~~-Vvvfsk~t~~~p~Cp~C~~----------ak~lL~~~gv~~~~~v--dV~~d~~~~~~l~~~tg~ 74 (118)
T 2wem_A 8 GSAEQLDALVKKDK-VVVFLKGTPEQPQCGFSNA----------VVQILRLHGVRDYAAY--NVLDDPELRQGIKDYSNW 74 (118)
T ss_dssp -CHHHHHHHHHHSS-EEEEESBCSSSBSSHHHHH----------HHHHHHHTTCCCCEEE--ESSSCHHHHHHHHHHHTC
T ss_pred cHHHHHHHHhccCC-EEEEEecCCCCCccHHHHH----------HHHHHHHcCCCCCEEE--EcCCCHHHHHHHHHHhCC
Confidence 44555666666665 6677776 46777764 4566664 25555 4433 44433 3444577
Q ss_pred CCCcEEEE
Q 013379 238 DSIPVVLV 245 (444)
Q Consensus 238 ~~~P~l~i 245 (444)
.++|.|.|
T Consensus 75 ~tvP~vfI 82 (118)
T 2wem_A 75 PTIPQVYL 82 (118)
T ss_dssp CSSCEEEE
T ss_pred CCcCeEEE
Confidence 88999853
No 473
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=22.71 E-value=52 Score=29.22 Aligned_cols=98 Identities=10% Similarity=0.133 Sum_probs=64.7
Q ss_pred CcHHHHHHHHHHcCCeEEEEEeCCCchhhHHHHhhccCChhHHHHHhcCEEEEEeecCChhHHHHHHHcCCCCCcEEEEE
Q 013379 167 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV 246 (444)
Q Consensus 167 gs~~~A~~~A~~~~K~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~~~fV~w~~~~~s~eg~~~~~~y~~~~~P~l~ii 246 (444)
+++.+.+...++.+|.++|++-.-. .+=.++.-.+||.+++=..++--........++.+++...|.+++|
T Consensus 41 ~~l~~~v~~lk~~~K~v~Vh~Dli~---------Gls~d~~ai~fL~~~~~pdGIIsTk~~~i~~Ak~~gL~tIqR~Fli 111 (192)
T 3kts_A 41 AQLKALVKYAQAGGKKVLLHADLVN---------GLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQRLFMI 111 (192)
T ss_dssp TTHHHHHHHHHHTTCEEEEEGGGEE---------TCCCSHHHHHHHHHTTCCSEEEESCHHHHHHHHHTTCEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCeEEEecCchh---------ccCCcHHHHHHHHhCCCCCEEEeCcHHHHHHHHHCCCeEEEEEEEE
Confidence 6899999999999998887433211 1224566677777543333333445667788889999899999988
Q ss_pred eCCC---C---------eeeEEEeCCCChHHHHHHHHhhhh
Q 013379 247 DPIT---G---------QKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 247 ~p~t---g---------~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
|-.. + ..+..+.|.+ | .++..+.+.++
T Consensus 112 DS~al~~~~~~i~~~~PD~iEiLPGi~-p-~iI~~i~~~~~ 150 (192)
T 3kts_A 112 DSSAYNKGVALIQKVQPDCIELLPGII-P-EQVQKMTQKLH 150 (192)
T ss_dssp SHHHHHHHHHHHHHHCCSEEEEECTTC-H-HHHHHHHHHHC
T ss_pred EcchHHHHHHHHhhcCCCEEEECCchh-H-HHHHHHHHhcC
Confidence 8431 1 1345566743 4 57777777654
No 474
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=22.10 E-value=1.2e+02 Score=25.62 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=29.2
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHHHhhhh
Q 013379 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD 275 (444)
Q Consensus 229 ~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L~~~l~ 275 (444)
...+..+++...|++ ||+ |+.+ +.|. +.+.|...|...+.
T Consensus 145 ~~~a~~~gv~gtPt~-vin---g~~~--~~g~-~~~~l~~~i~~~~~ 184 (193)
T 2rem_A 145 RAYALKVRPVGTPTI-VVN---GRYM--VTGH-DFEDTLRITDYLVS 184 (193)
T ss_dssp HHHHHHHCCSSSSEE-EET---TTEE--ECCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeE-EEC---CEEE--ecCC-CHHHHHHHHHHHHH
Confidence 446778999999995 454 5543 4677 88888888877765
No 475
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=21.80 E-value=91 Score=30.50 Aligned_cols=46 Identities=20% Similarity=0.256 Sum_probs=33.8
Q ss_pred ccCCcchHHHHHHhhcccc-------cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Q 013379 3 SVLSANDKQSMVSSFLEIA-------VGQTAETAVQFLQATSWKLDEAIQLFYV 49 (444)
Q Consensus 3 ~~l~~~~~~~~i~~F~~it-------t~~~~~~A~~~L~~~~w~le~Av~~~~~ 49 (444)
..|++.++ +.|++|.+.. --.|...-.+||.+++||++.|...+-.
T Consensus 6 ~~l~~~q~-~~l~~lr~~l~~~~~~l~~~dD~~LlRFLrarkfdv~~A~~~l~~ 58 (403)
T 1olm_A 6 GDLSPRQK-EALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRK 58 (403)
T ss_dssp TBCCHHHH-HHHHHHHHHHGGGGGGSSCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCCCHHHH-HHHHHHHHHHHhhccCCCCCChhHHHHHHHhcCCCHHHHHHHHHH
Confidence 35666664 4777775421 1357899999999999999999998744
No 476
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=21.70 E-value=2.8e+02 Score=21.52 Aligned_cols=46 Identities=7% Similarity=0.095 Sum_probs=35.0
Q ss_pred CCceEEEEECCCCceEEEEeC--CCCchHHHHHHHHhhcCCCCCcCeE
Q 013379 364 SLLCRVGVRLPDGRRMQRNFL--RTDPIQLLWSYCYSQLEGSEMKPFR 409 (444)
Q Consensus 364 ~~~~~i~iRlP~G~r~~rrF~--~~~~l~~l~~fv~~~~~~~~~~~f~ 409 (444)
....-|+|+.|||.-+.-.-. ..-..++|.+-|...+++.....|+
T Consensus 12 a~~lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT~TAFe 59 (106)
T 2npt_A 12 NQVLVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEATTTAFE 59 (106)
T ss_dssp -CCEEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSCCSEEE
T ss_pred cCceEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccceeeeee
Confidence 356789999999998887777 4667889999998888775555554
No 477
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=21.52 E-value=2.7e+02 Score=21.05 Aligned_cols=56 Identities=13% Similarity=0.110 Sum_probs=32.4
Q ss_pred eEEEEEeCCCchhhHHHHhhccCChhHHHHHh---cCEEEEEeecCC-hhHH-HHHHHc-CCCCCcEEEEEeCCCCeee
Q 013379 182 WLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDT-SEGK-KVCTYY-KLDSIPVVLVVDPITGQKM 254 (444)
Q Consensus 182 ~LlVyl~~~~~~~~~~f~rdv~~~~~V~~~l~---~~fV~w~~~~~s-~eg~-~~~~~y-~~~~~P~l~ii~p~tg~~v 254 (444)
.+.|| ..++|..|... +.+|+ -.|... +++. ++.. .+...+ +..++|.| +|+ |+.+
T Consensus 17 ~v~vy-~~~~Cp~C~~a----------k~~L~~~~i~y~~i--dI~~~~~~~~~l~~~~~g~~~vP~i-fi~---g~~i 78 (99)
T 3qmx_A 17 KIEIY-TWSTCPFCMRA----------LALLKRKGVEFQEY--CIDGDNEAREAMAARANGKRSLPQI-FID---DQHI 78 (99)
T ss_dssp CEEEE-ECTTCHHHHHH----------HHHHHHHTCCCEEE--ECTTCHHHHHHHHHHTTTCCCSCEE-EET---TEEE
T ss_pred CEEEE-EcCCChhHHHH----------HHHHHHCCCCCEEE--EcCCCHHHHHHHHHHhCCCCCCCEE-EEC---CEEE
Confidence 44454 45569888875 33443 346655 4443 3333 355666 88899988 444 6543
No 478
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=20.93 E-value=69 Score=27.68 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=30.5
Q ss_pred HHHHHHcCCCCCcEEEEEeCCCCeeeEEEeCCCChHHHHHHH
Q 013379 229 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL 270 (444)
Q Consensus 229 ~~~~~~y~~~~~P~l~ii~p~tg~~v~~~~G~~~~~~~l~~L 270 (444)
.+.++.++|...|+++| +|+.+..++|..++++|.+.|
T Consensus 144 ~~~a~~~GV~gtPtf~i----ng~~~~~~s~~~~~e~w~~~l 181 (182)
T 3gn3_A 144 TKYARQNGIHVSPTFMI----NGLVQPGMSSGDPVSKWVSDI 181 (182)
T ss_dssp HHHHHHHTCCSSSEEEE----TTEECTTCCTTSCHHHHHHHH
T ss_pred HHHHHHCCCCccCEEEE----CCEEccCCCCCCCHHHHHHHh
Confidence 35677899999999986 577766678888999988765
Done!