Query 013381
Match_columns 444
No_of_seqs 205 out of 411
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 09:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013381.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013381hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x3z_A Peptide: N-glycanase; h 100.0 8.5E-74 2.9E-78 571.4 17.7 212 3-217 103-319 (335)
2 2f4m_A Peptide N-glycanase; gl 100.0 3E-64 1E-68 496.7 22.3 215 3-217 65-281 (295)
3 2qsf_A RAD4, DNA repair protei 100.0 1.5E-34 5.1E-39 304.3 8.5 236 3-276 105-387 (533)
4 3isr_A Transglutaminase-like e 99.4 2.8E-13 9.5E-18 133.1 7.9 76 66-144 168-250 (293)
5 2g9g_A Pngase, peptide N-glyca 99.4 4.5E-16 1.5E-20 148.4 -13.6 132 223-362 17-155 (221)
6 2q3z_A Transglutaminase 2; tra 98.8 6.8E-09 2.3E-13 112.5 6.8 53 76-128 274-363 (687)
7 1vjj_A Protein-glutamine gluta 98.4 1.7E-07 5.8E-12 101.7 6.8 58 70-127 258-357 (692)
8 1g0d_A Protein-glutamine gamma 98.4 2.8E-07 9.5E-12 100.0 6.6 56 72-127 260-359 (695)
9 3kd4_A Putative protease; stru 98.4 4.7E-07 1.6E-11 94.4 7.4 59 66-126 274-345 (506)
10 1ex0_A Coagulation factor XIII 98.4 2.9E-07 9.8E-12 100.4 5.9 55 72-126 303-399 (731)
11 2i74_A Pngase; beta-sandwich, 96.9 2.8E-06 9.7E-11 79.5 -11.5 102 252-361 7-114 (189)
12 4fgq_A Periplasmic protein; DU 93.8 0.14 4.9E-06 48.0 7.5 83 65-154 72-164 (193)
13 3lnb_A N-acetyltransferase fam 68.4 7.3 0.00025 38.5 6.1 29 73-101 93-121 (309)
14 1w4t_A Arylamine N-acetyltrans 65.0 4.4 0.00015 39.7 3.7 65 70-136 83-163 (299)
15 2ija_A Arylamine N-acetyltrans 64.7 4.5 0.00015 39.3 3.7 35 67-101 56-95 (295)
16 1e2t_A NAT, N-hydroxyarylamine 63.5 5.2 0.00018 38.7 3.9 66 69-136 61-140 (284)
17 1w5r_A Arylamine N-acetyltrans 62.4 4.8 0.00016 38.9 3.3 35 67-101 56-95 (278)
18 2vfb_A Arylamine N-acetyltrans 61.2 5.1 0.00018 38.7 3.3 62 73-136 64-142 (280)
19 2bsz_A Arylamine N-acetyltrans 60.6 5.1 0.00017 38.7 3.2 69 67-137 56-143 (278)
20 3d9w_A Putative acetyltransfer 59.7 5.8 0.0002 38.6 3.4 35 67-101 65-104 (293)
21 1l1o_C Replication protein A 7 58.1 7.3 0.00025 35.2 3.6 60 18-124 43-109 (181)
22 1tfi_A Transcriptional elongat 51.1 10 0.00035 28.0 2.7 41 17-62 8-49 (50)
23 1qyp_A RNA polymerase II; tran 42.8 12 0.00043 27.6 2.1 38 19-61 16-54 (57)
24 2pjk_A 178AA long hypothetical 42.2 9.3 0.00032 34.4 1.6 116 269-385 35-177 (178)
25 2akl_A PHNA-like protein PA012 41.1 10 0.00036 33.8 1.7 29 17-60 26-54 (138)
26 1dxg_A Desulforedoxin; non-hem 41.1 5.8 0.0002 27.3 0.0 16 46-61 2-17 (36)
27 1vk6_A NADH pyrophosphatase; 1 40.3 12 0.00042 35.7 2.3 43 3-66 98-140 (269)
28 2fiy_A Protein FDHE homolog; F 39.9 11 0.00038 37.3 1.9 51 15-81 180-230 (309)
29 2fiy_A Protein FDHE homolog; F 39.6 12 0.00041 37.0 2.1 44 17-61 221-264 (309)
30 3rfq_A Pterin-4-alpha-carbinol 37.3 7.6 0.00026 35.6 0.2 55 332-386 118-183 (185)
31 1vq8_Z 50S ribosomal protein L 35.0 13 0.00043 30.4 1.2 26 19-59 28-54 (83)
32 3o9x_A Uncharacterized HTH-typ 34.5 7.5 0.00026 32.3 -0.3 42 19-61 3-47 (133)
33 3iwt_A 178AA long hypothetical 32.8 18 0.00061 31.9 1.9 54 332-385 110-177 (178)
34 4e2x_A TCAB9; kijanose, tetron 32.0 42 0.0014 32.7 4.6 110 18-128 12-141 (416)
35 3pzy_A MOG; ssgcid, seattle st 31.3 14 0.00048 32.8 1.0 115 269-386 22-159 (164)
36 1x0t_A Ribonuclease P protein 31.1 15 0.0005 31.6 1.0 17 48-64 92-108 (120)
37 3j21_i 50S ribosomal protein L 28.2 32 0.0011 28.2 2.5 29 18-60 35-63 (83)
38 3iz5_m 60S ribosomal protein L 26.6 39 0.0013 28.3 2.7 28 19-60 37-64 (92)
39 3u50_C Telomerase-associated p 26.1 18 0.00061 33.1 0.7 60 14-122 39-103 (172)
40 2k3r_A Ribonuclease P protein 26.1 18 0.0006 31.3 0.6 18 48-65 87-104 (123)
41 4esj_A Type-2 restriction enzy 25.4 32 0.0011 33.5 2.3 36 15-61 30-67 (257)
42 3izc_m 60S ribosomal protein R 24.4 44 0.0015 27.9 2.7 29 18-60 36-64 (92)
43 4abo_I MAL3, microtubule integ 24.1 13 0.00046 33.4 -0.6 13 2-14 94-106 (145)
44 3j20_Y 30S ribosomal protein S 24.0 30 0.001 25.5 1.4 28 18-59 19-46 (50)
45 2k4x_A 30S ribosomal protein S 23.7 46 0.0016 24.9 2.5 42 5-60 3-46 (55)
46 3jyw_9 60S ribosomal protein L 22.9 36 0.0012 27.3 1.8 27 18-59 26-53 (72)
47 3cc2_Z 50S ribosomal protein L 21.7 36 0.0012 29.6 1.7 37 19-70 61-100 (116)
48 1nui_A DNA primase/helicase; z 21.2 33 0.0011 31.9 1.4 37 14-63 10-46 (255)
49 3ga8_A HTH-type transcriptiona 20.3 23 0.00078 27.6 0.2 41 19-60 3-46 (78)
No 1
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=100.00 E-value=8.5e-74 Score=571.45 Aligned_cols=212 Identities=40% Similarity=0.810 Sum_probs=204.2
Q ss_pred chhHHhhccC-ceeecCCCCCCCCCCC---cc-ccCCCCChhhhhcCccEEEEEecCCCCCccccCCCCCHHHHHHhCCc
Q 013381 3 LICVLFILQY-CRWVNAPPCDGCSNET---VG-QGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRG 77 (444)
Q Consensus 3 ~~LL~WFK~~-F~Wvn~P~C~~Cg~~t---~~-~g~~~Pt~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~kLL~tR~G 77 (444)
++||+|||++ |+|||+|||+.||+++ .. +|+.+|+++|..+||++||+|+|+.||+.+||||||+|.+||+||+|
T Consensus 103 ~~LL~WFk~~fF~wvn~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~rFPRYn~~~~ll~tr~G 182 (335)
T 1x3z_A 103 KELLRYFKQDFFKWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRFPRYNDPIKLLETRKG 182 (335)
T ss_dssp HHHHHHHHHTTCEECSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEEEEECCHHHHHHHCEE
T ss_pred HHHHHHHHhcCCEeeCCCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCcccccCCcCCHHHHHHhCCc
Confidence 5899999985 8999999999999985 45 69999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHcCCCeEEEEeCCCceEEEEeeCCCCCeEEeccCCCccCCCeeeecCccCccceEEeecCCcceec
Q 013381 78 RCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDV 157 (444)
Q Consensus 78 rCgE~AnlF~~l~RAlG~~aR~V~d~~dHvW~EVys~~~~rWIhVDPceg~iD~Pllye~gwgK~lsYVIAFs~DGv~DV 157 (444)
+|+|||+||+++|||+|++||||+|+++|+|+|||++..++|||||||++++|+|++|+.||+|+|+|||||++||++||
T Consensus 183 ~C~e~A~lF~~llRalGi~aR~V~~~~~H~W~EV~~~~~~rWv~vDp~~~~id~P~~ye~gw~k~msYVIAFs~dgv~DV 262 (335)
T 1x3z_A 183 RCGEWCNLFTLILKSFGLDVRYVWNREDHVWCEYFSNFLNRWVHVDSCEQSFDQPYIYSINWNKKMSYCIAFGKDGVVDV 262 (335)
T ss_dssp CHHHHHHHHHHHHHTTTCCEEEEEETTTEEEEEEEETTTTEEEEEETTTTEESCTHHHHTTSCCCBCCEEEEETTEEEEC
T ss_pred ChHHHHHHHHHHHHHCCCCeEEEecCCCcEEEEEEECCCCCEEEECCCCCccCCCceeecCCCCceEEEEEEcCCCCEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccChHHHhhccccccHHHHHHHHHHHHHHHHccCCHHHhhhhhhhcHHHHHHHHhh
Q 013381 158 TKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERD 217 (444)
Q Consensus 158 TrRYt~~~~~~~~RR~rv~Eewl~~~L~~l~~~~R~~ls~~~~~~Le~RD~~E~~EL~~~ 217 (444)
|+||+.+ + .+ +|.+|+|+||..+|+.|++++|.+++++++.+|++||+.|..||...
T Consensus 263 T~RY~~~-~-~l-rR~rv~e~wl~~~L~~l~~~~r~~~s~~e~~~L~~Rd~~E~~EL~~~ 319 (335)
T 1x3z_A 263 SKRYILQ-N-EL-PRDQIKEEDLKFLCQFITKRLRYSLNDDEIYQLACRDEQEQIELIRG 319 (335)
T ss_dssp HHHHCSS-S-BC-CCCSSCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCcC-C-cc-ccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHhhcc
Confidence 9999999 4 43 88899999999999999999999999999999999999999999855
No 2
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=100.00 E-value=3e-64 Score=496.67 Aligned_cols=215 Identities=45% Similarity=0.826 Sum_probs=208.8
Q ss_pred chhHHhhcc-CceeecCCCCCCCCCCCccccC-CCCChhhhhcCccEEEEEecCCCCCccccCCCCCHHHHHHhCCccch
Q 013381 3 LICVLFILQ-YCRWVNAPPCDGCSNETVGQGM-GTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCG 80 (444)
Q Consensus 3 ~~LL~WFK~-~F~Wvn~P~C~~Cg~~t~~~g~-~~Pt~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~kLL~tR~GrCg 80 (444)
++||+|||+ ||+|||+|||+.||++|...|+ ++|+++|..+||++||.|+|..|+..+||||||+|.++|++|+|+|+
T Consensus 65 ~~ll~wFk~~fF~~~~~P~c~~C~~~~~~~g~~~~~~~~e~~~~a~~vE~y~c~~c~~~~~~pr~~~~~~~l~~r~G~C~ 144 (295)
T 2f4m_A 65 LELLHWFKEEFFRWVNNIVCSKCGGETRSRDEALLPNDDELKWGAKNVENHYCDACQLSNRFPRYNNPEKLLETRCGRCG 144 (295)
T ss_dssp HHHHHHHHHTTCEECSSCCCTTTCCCCEECSSCBCCCSHHHHTTCCCEEEEEETTTTEEEEEECCCCHHHHHHHCEESHH
T ss_pred HHHHHHHHhcCCEEeCCCCCcccCCcccccCCCCCCChhHhhcccchhheeeccccCceeecCCCCCHHHHHHcCCEeeH
Confidence 589999998 5999999999999999999888 89999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCeEEEEeCCCceEEEEeeCCCCCeEEeccCCCccCCCeeeecCccCccceEEeecCCcceechhh
Q 013381 81 EWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKR 160 (444)
Q Consensus 81 E~AnlF~~l~RAlG~~aR~V~d~~dHvW~EVys~~~~rWIhVDPceg~iD~Pllye~gwgK~lsYVIAFs~DGv~DVTrR 160 (444)
+||++|+++|||+|++||||.++.+|+|+|||+++.++||+|||+++++++|++|+.||+++|+|||||+.||++|||+|
T Consensus 145 d~A~lf~al~Ra~GIpAR~V~Gy~~HaW~Evy~~g~~gWv~~Dpt~~~~~~p~~~e~gwgr~lsYViAf~~D~a~DVT~R 224 (295)
T 2f4m_A 145 EWANCFTLCCRALGFEARYVWDYTDHVWTEVYSPSQQRWLHCDACEDVCDKPLLYEIGWGKKLSYIIAFSKDEVVDVTWR 224 (295)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEETTTEEEEEEEETTTTEEEEEETTTTEESCGGGTTTTSCCCCCCEEEECSSCEEECGGG
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCCEEEEEEEECCCCeEEEEeCCcCccCCCceEeeccCCCceEEEEECCccCccchhh
Confidence 99999999999999999999999999999999998788999999999999999999999999999999999999999999
Q ss_pred hccChHHHhhccccccHHHHHHHHHHHHHHHHccCCHHHhhhhhhhcHHHHHHHHhh
Q 013381 161 YTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERD 217 (444)
Q Consensus 161 Yt~~~~~~~~RR~rv~Eewl~~~L~~l~~~~R~~ls~~~~~~Le~RD~~E~~EL~~~ 217 (444)
|+.+|+.+.++|.+++|+||.++|..|+.++|.++|++++++|++||+.|..||...
T Consensus 225 Y~~~~~~~~~rR~~v~e~wl~~~l~~l~~~~r~~~s~~e~~~l~~Rd~~E~~el~~~ 281 (295)
T 2f4m_A 225 YSCKHDEVMSRRTKVKEELLRETINGLNKQRQLSLSESRRKELLQRIIVELVEFISP 281 (295)
T ss_dssp GCSCHHHHHHHCCSSCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred cccchHHHHhhccCCCHHHHHHHHHHHHHHHHccCCHHHHHHHHHhHHHHHHHhcCc
Confidence 999999888899999999999999999999999999999999999999999999744
No 3
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_A* 2qsh_A*
Probab=100.00 E-value=1.5e-34 Score=304.28 Aligned_cols=236 Identities=17% Similarity=0.173 Sum_probs=159.9
Q ss_pred chhHHhhccCceeecCCCCCCCCCCCccccCCCCChhhhhcCccEEEEEecCCCCCccccCCCCCHHHHHHhCCccchhh
Q 013381 3 LICVLFILQYCRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEW 82 (444)
Q Consensus 3 ~~LL~WFK~~F~Wvn~P~C~~Cg~~t~~~g~~~Pt~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~kLL~tR~GrCgE~ 82 (444)
.+|++|||+.|+ ++.|. ..||... +.-.|.... .++.| ..++..++++.+++++++|+|++|
T Consensus 105 k~L~~ww~~~F~-it~p~-~~~g~~~-------~~w~e~~~~-------~~~~~--~f~~~~~~~f~~~~~~~~Gs~d~~ 166 (533)
T 2qsf_A 105 KKCMELWQKHWK-ITKKY-DNEGLYM-------RTWKEIEMS-------ANNKR--KFKTLKRSDFLRAVSKGHGDPDIS 166 (533)
T ss_dssp HHHHHHHHHHCC-EECCC-SSCTTSC-------CCHHHHHHT-------TTTCC--CEECCCHHHHHHHHHHTEECHHHH
T ss_pred HHHHHHHHhhEE-EcCCc-cCCCccc-------cCccccchh-------hcccc--ccccccHHHHHHHHHhcCCChhHH
Confidence 368899998764 45442 4454421 222222111 11111 124445689999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEEeC-------------------------CCceEEEEeeCCCCCeEEeccCCC-cc---CCCe
Q 013381 83 ANCFTLYCRAFGYESRLILDF-------------------------TDHVWTECFSQSLGRWMHLDPCEG-IY---DRPL 133 (444)
Q Consensus 83 AnlF~~l~RAlG~~aR~V~d~-------------------------~dHvW~EVys~~~~rWIhVDPceg-~i---D~Pl 133 (444)
|+||+++|||||++||+|++. .+|+|+|||++.++||||||||++ ++ +.|.
T Consensus 167 AqlF~aLlRalG~~aRlV~SLqP~~f~~~k~~~~~~k~~~~~~~~~~P~~W~EV~s~~~~rWi~VDp~~~~~id~~~~~~ 246 (533)
T 2qsf_A 167 VQGFVAMLRACNVNARLIMSCQPPDFTNMKIDTSLNGNNAYKDMVKYPIFWCEVWDKFSKKWITVDPVNLKTIEQVRLHS 246 (533)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECCCCTTCCBSCCCCC---CHHHHTTSCSEEEEEEETTTTEEEEEESSSSCEEECCSSCC
T ss_pred HHHHHHHHHHCCCceEEEeccccccccccccccCcccCCccccccCCCeEEEEEEEcCCCeEEEEecccccccccccccc
Confidence 999999999999999999862 379999999999999999999985 44 5677
Q ss_pred eeec-----CccCccceEEeecCC-cceechhhhccChHHHhhccccc-----cHHHHHHHHHHHHHHHHccCCHHHhhh
Q 013381 134 LYEK-----GWNKKLNYVIAISKD-GVFDVTKRYTRKWHEVLSRRNIA-----TEQTVSAVLAKMTRECRRSFASETLST 202 (444)
Q Consensus 134 lye~-----gwgK~lsYVIAFs~D-Gv~DVTrRYt~~~~~~~~RR~rv-----~Eewl~~~L~~l~~~~R~~ls~~~~~~ 202 (444)
+||+ +|+++|+|||||+.| +++|||+||+.+|+.. .+|.++ .++||..+|+.++++.+
T Consensus 247 ~~Ep~~~~~~~~~~m~YViAf~~d~~~kDVT~RY~~~~~~k-~rr~Ri~~~~~~~~W~~~~L~~~~~~~~---------- 315 (533)
T 2qsf_A 247 KLAPKGVACCERNMLRYVIAYDRKYGCRDVTRRYAQWMNSK-VRKRRITKDDFGEKWFRKVITALHHRKR---------- 315 (533)
T ss_dssp TTSCCSTTTTSSCCCCEEEEECTTCCEEECHHHHCTTCCCC-CGGGSGGGSHHHHHHHHHHHHHHCCSCC----------
T ss_pred ccccccccccccCceeEEEEEcCCCceEecchhhhhchhhh-hheeeecCCcchHHHHHHHHHHHhcCCc----------
Confidence 8885 399999999999987 5899999999999654 456666 48999999998885221
Q ss_pred hhhhcHHHHHHHHhhccCCCCCCCCCCCcccccHHHHHh---hcCCCCCCCCCccCCCCCceeecc----cceeeEeecc
Q 013381 203 LEDRDKCEREAMERDLYSTDDAPVSLPGRQSGDKEWRIS---RSEIGSDDNCSLSCSSCPVRVCID----EHVTTIYNAF 275 (444)
Q Consensus 203 Le~RD~~E~~EL~~~~~~~~~~~~~l~GRqSGs~eWr~a---RGE~G~~~~~s~~~s~cp~r~c~d----ehv~~iY~a~ 275 (444)
..+|..|+.||......+. +|-=. .+.|.+ =-|.-...+..+.|..-|++.|.. ..+..||...
T Consensus 316 -~~~d~~Ed~el~~~~~~e~-----~P~s~---~~fK~HP~yvLer~L~k~E~i~P~a~~~g~~~~~~k~~~~E~VY~R~ 386 (533)
T 2qsf_A 316 -TKIDDYEDQYFFQRDESEG-----IPDSV---QDLKNHPYYVLEQDIKQTQIVKPGCKECGYLKVHGKVGKVLKVYAKR 386 (533)
T ss_dssp -CHHHHHHHHHHHHHHHHSC-----CCSST---GGGTTCSSEEEGGGSCTTEEECTTCCCSEEEECCSTTCCEEEEEEGG
T ss_pred -cccchhHHHHHHHHHhcCC-----CCccH---HHHcCCcHhhhhhhhccceeeCCCCceeeEEecCcCCCcccceeehh
Confidence 2467778877754432221 11000 122222 111112334455566567787753 2345788876
Q ss_pred h
Q 013381 276 S 276 (444)
Q Consensus 276 ~ 276 (444)
.
T Consensus 387 ~ 387 (533)
T 2qsf_A 387 D 387 (533)
T ss_dssp G
T ss_pred h
Confidence 6
No 4
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}
Probab=99.40 E-value=2.8e-13 Score=133.15 Aligned_cols=76 Identities=16% Similarity=0.308 Sum_probs=64.8
Q ss_pred CCHHHHHHhCCccchhhHHHHHHHHHHcCCCeEEEEeC-------CCceEEEEeeCCCCCeEEeccCCCccCCCeeeecC
Q 013381 66 NDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDF-------TDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKG 138 (444)
Q Consensus 66 n~p~kLL~tR~GrCgE~AnlF~~l~RAlG~~aR~V~d~-------~dHvW~EVys~~~~rWIhVDPceg~iD~Pllye~g 138 (444)
.++.++|+.|+|.|.++|++|++|||++|++||||..+ ..|+|+|||.++ +|+++||+.+..+. .++..+
T Consensus 168 ~~a~~~l~~~~G~C~d~A~l~val~Ra~GIPAR~VsGy~~~~~~~~~HAW~Evyl~g--gWv~~DpT~~~~~~-~~I~vA 244 (293)
T 3isr_A 168 TSAFDTITERAGVCRDFAHLGIALCRALSIPARYFTGYAFKLNPPDFHACFEAYIGG--NWIIFDATRLVPLN-GLVKIA 244 (293)
T ss_dssp CCHHHHHHHCEECHHHHHHHHHHHHHHTTCCEEEEEEEETTCSSCCEEEEEEEEETT--EEEEECTTCCSCGG-GEEEEE
T ss_pred CCHHHhhcCCcEehHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCeEEEEEEEECC--cEEEEECCCCCCCC-CeEEEE
Confidence 47999999999999999999999999999999999763 469999999986 69999999886543 456667
Q ss_pred ccCccc
Q 013381 139 WNKKLN 144 (444)
Q Consensus 139 wgK~ls 144 (444)
+|+.-+
T Consensus 245 ~GRD~~ 250 (293)
T 3isr_A 245 TGRDAA 250 (293)
T ss_dssp EESSGG
T ss_pred ECCCHH
Confidence 776433
No 5
>2g9g_A Pngase, peptide N-glycanase; beta-sandwich, hydrolase; 2.00A {Mus musculus} SCOP: b.18.1.29
Probab=99.37 E-value=4.5e-16 Score=148.45 Aligned_cols=132 Identities=20% Similarity=0.218 Sum_probs=88.2
Q ss_pred CCCCCCCCcccccHHHHHhhcCCCCCCC-CCccCCCCCceeecccceeeEeecch---hhhhccccCC-CchhhHHHHHH
Q 013381 223 DAPVSLPGRQSGDKEWRISRSEIGSDDN-CSLSCSSCPVRVCIDEHVTTIYNAFS---SVLSHFVENN-VPKSGAIELLK 297 (444)
Q Consensus 223 ~~~~~l~GRqSGs~eWr~aRGE~G~~~~-~s~~~s~cp~r~c~dehv~~iY~a~~---~~ls~~~~~~-~~~~~a~~~~~ 297 (444)
+++.++.||.|||++||.||||+|.... .++.|+.. ...+.++...|+.+. .+.++..+.- .|.+++..+..
T Consensus 17 ~~~~e~~GRtSGSl~WR~aRGE~g~~~~~~v~~p~e~---e~~~~~f~f~Y~~~~D~Ysr~~~n~~~i~gW~s~~~~~~n 93 (221)
T 2g9g_A 17 RGSHELGGRVSGSLAWRVARGETGLERKEILFIPSEN---EKISKQFHLRYDIVRDRYIRVSDNNTNISGWENGVWKMES 93 (221)
T ss_dssp -------CEECSSEEEC---------CCCCEECCCHH---HHHHTEEEEEEETTTTEEEEGGGTTEEEESGGGGCSSEES
T ss_pred CCccccCCcccccHHHHHHhhccccCcCceeeccchh---hhhCCEEEEEEeccCcEEEEecCCCccccchhhccccccc
Confidence 4678899999999999999999987432 24555555 555788999999998 5555543333 69999999999
Q ss_pred HHHHHHhhccCCCcccccccccCCCCchhHHHHhhhccHHHHHHhhccc--cccCCCCCeEEEecCC
Q 013381 298 ILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQLLPSIGHLLRVLSLK--SELNTDGRVDIVLAGD 362 (444)
Q Consensus 298 ~~r~~~~dlk~~~f~~R~~~~~~~~~~~~~~~~~~lps~~~ll~~lslk--~~~~~~g~~~~~~~~~ 362 (444)
||||++.||||+ |++|++.-+....+| .|. |++.+-.+.-|.++ .+...+|.|.+++-++
T Consensus 94 IfRkvE~DWkmv-YLaR~Egt~~g~IsW--kFd--l~~~gl~V~ki~I~~~sq~f~~G~v~~~i~~~ 155 (221)
T 2g9g_A 94 IFRKVEKDWNMV-YLARKEGSSFAYISW--KFE--CGSAGLKVDTVSIRTSSQSFESGSVRWKLRSE 155 (221)
T ss_dssp EEEEEETTTTEE-EEEECTTCSEEEEEE--EEE--CTTTTEEEEEEEEEEEEEECTTCEEEEEEECS
T ss_pred eEEEEeCCCceE-EEEEeCCCCEEEEEE--EEe--cCCCCcEEEEEEEEEeeEEecCCEEEEEEeCC
Confidence 999999999999 999999888777777 443 56655456666655 3445799998877764
No 6
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=98.75 E-value=6.8e-09 Score=112.52 Aligned_cols=53 Identities=25% Similarity=0.537 Sum_probs=46.2
Q ss_pred CccchhhHHHHHHHHHHcCCCeEEEEeC-------------------------------CCceEEEEeeC------CCCC
Q 013381 76 RGRCGEWANCFTLYCRAFGYESRLILDF-------------------------------TDHVWTECFSQ------SLGR 118 (444)
Q Consensus 76 ~GrCgE~AnlF~~l~RAlG~~aR~V~d~-------------------------------~dHvW~EVys~------~~~r 118 (444)
.|.|.+||.+|+++||++|++||+|.++ .-|+|+|||.+ +...
T Consensus 274 ~G~C~dfA~~~~~llRalGIPAR~VsGy~~~~~~~~~l~~d~~~~~~g~~~~~~~d~~~~~HAW~Ev~~~rpDLp~g~~G 353 (687)
T 2q3z_A 274 YGQCWVFAAVACTVLRCLGIPTRVVTNYNSAHDQNSNLLIEYFRNEFGEIQGDKSEMIWNFHCWVESWMTRPDLQPGYEG 353 (687)
T ss_dssp EECHHHHHHHHHHHHHHHTCCEEEEEEEEEECC--CCHHHHHHHC---------CCCCBSEEEEEEEEECCTTSSTTCCE
T ss_pred eeehHHHHHHHHHHHHhCCCCcEEEeecccccccccccccccccCCCCceeeecCCcccceeEEEEEEcccCCCCCCCCC
Confidence 7999999999999999999999999542 15999999998 5356
Q ss_pred eEEeccCCCc
Q 013381 119 WMHLDPCEGI 128 (444)
Q Consensus 119 WIhVDPceg~ 128 (444)
|+.+||+.+.
T Consensus 354 W~~~DpT~~~ 363 (687)
T 2q3z_A 354 WQALDPTPQE 363 (687)
T ss_dssp EEEECCSSCC
T ss_pred EEEECCCCCc
Confidence 9999999754
No 7
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=98.44 E-value=1.7e-07 Score=101.73 Aligned_cols=58 Identities=31% Similarity=0.553 Sum_probs=48.1
Q ss_pred HHHHhC-----CccchhhHHHHHHHHHHcCCCeEEEEeC-------------------------------CCceEEEEee
Q 013381 70 KLVETK-----RGRCGEWANCFTLYCRAFGYESRLILDF-------------------------------TDHVWTECFS 113 (444)
Q Consensus 70 kLL~tR-----~GrCgE~AnlF~~l~RAlG~~aR~V~d~-------------------------------~dHvW~EVys 113 (444)
+.+.+| .|.|.+||.+|+++|||+|++||+|-++ .-|+|+|+|.
T Consensus 258 ~~~~~~~~PV~~G~C~~fA~~~~~~lR~lGIPaR~Vtgy~s~~d~~~nL~~d~~~~~~g~~~~~~~dsIW~~HaW~E~w~ 337 (692)
T 1vjj_A 258 NWKKSGLSPVRYGQCWVFAGTLNTALRSLGIPSRVITNFNSAHDTDRNLSVDVYYDPMGNPLDKGSDSVWNFHVWNEGWF 337 (692)
T ss_dssp HHHHTTSCCEEEECHHHHHHHHHHHHHHHTCCEEEEEEEEEEECSSSSSEEEEEECTTSCBCCCCSCEEEEEEEEEEEEE
T ss_pred HHHHcCCCcccceeeHHHHHHHHHHHHhCCCCeeEEcccccccCCCCCcccceeeccCCcccccccccccceeEEEEEec
Confidence 456665 3999999999999999999999999643 1599999998
Q ss_pred C------CCCCeEEeccCCC
Q 013381 114 Q------SLGRWMHLDPCEG 127 (444)
Q Consensus 114 ~------~~~rWIhVDPceg 127 (444)
. ..+.|+.+||+.+
T Consensus 338 ~rpDLp~~~~gW~~~DpT~~ 357 (692)
T 1vjj_A 338 VRSDLGPSYGGWQVLDATPQ 357 (692)
T ss_dssp CCTTTCGGGCEEEEECCSCS
T ss_pred cccCCCCCCCCEEEECCCCC
Confidence 5 2357999999964
No 8
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=98.39 E-value=2.8e-07 Score=100.02 Aligned_cols=56 Identities=29% Similarity=0.535 Sum_probs=47.1
Q ss_pred HHhC-C----ccchhhHHHHHHHHHHcCCCeEEEEeC---------------------------------CCceEEEEee
Q 013381 72 VETK-R----GRCGEWANCFTLYCRAFGYESRLILDF---------------------------------TDHVWTECFS 113 (444)
Q Consensus 72 L~tR-~----GrCgE~AnlF~~l~RAlG~~aR~V~d~---------------------------------~dHvW~EVys 113 (444)
+++| + |.|.+||.+|+++|||+|+|||+|-++ .-|+|+|+|.
T Consensus 260 ~~~~~~PV~~G~C~~fA~v~~t~lR~lGIPaR~Vtgy~sa~d~~~nL~id~~~~~~g~~~~~~~~~dsiw~~HaW~E~w~ 339 (695)
T 1g0d_A 260 SKAGVRPVKYGQCWVFAAVACTVLRCLGIPTRPITNFASAHDVDGNLSVDFLLNERLESLDSRQRSDSSWNFHCWVESWM 339 (695)
T ss_dssp HHTTSCCEEEECHHHHHHHHHHHHHHHTCCEEEEEEEEETTTTTTCSEEEEEECTTSCBSCTTCCBCSSEEEEEEEEEEE
T ss_pred HHcCCCcccceeeHHHHHHHHHHHHhCCCCeeEEccccccCCCCCccceeeeecccCceecccccCCcceeeEEEEEeec
Confidence 5666 4 999999999999999999999999642 1399999998
Q ss_pred C------CCCCeEEeccCCC
Q 013381 114 Q------SLGRWMHLDPCEG 127 (444)
Q Consensus 114 ~------~~~rWIhVDPceg 127 (444)
. ..+.|+.+||+..
T Consensus 340 ~rpDLp~~~~gWq~~DpTpq 359 (695)
T 1g0d_A 340 SREDLPEGNDGWQVLDPTPQ 359 (695)
T ss_dssp CCTTSCTTCCEEEEEECSCC
T ss_pred ccCCCCCCCCCeEEEcCCCc
Confidence 4 3456999999953
No 9
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=98.36 E-value=4.7e-07 Score=94.42 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=53.2
Q ss_pred CCHHHHHHhCCccchhhHHHHHHHHHHcCCCeEEEEeC-------------CCceEEEEeeCCCCCeEEeccCC
Q 013381 66 NDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDF-------------TDHVWTECFSQSLGRWMHLDPCE 126 (444)
Q Consensus 66 n~p~kLL~tR~GrCgE~AnlF~~l~RAlG~~aR~V~d~-------------~dHvW~EVys~~~~rWIhVDPce 126 (444)
.++.++|++|.|.|.+.|+||++||||+|++||+|+-. -+|+|++|+.. ++|.-+||+.
T Consensus 274 ~~a~~vl~~~~G~C~d~a~Ll~AllRa~GIpA~~v~~~t~~~~~~~~~lp~~nh~i~~v~~~--g~~y~lDat~ 345 (506)
T 3kd4_A 274 RDIDTVLRSAYGTPLEIAQLLNVMLNAAGIPSEVLAVYPGHLDTDACGLAAIQTLAVKATVD--GKDQYLSASP 345 (506)
T ss_dssp CCHHHHHHHTEECHHHHHHHHHHHHHHTTCCEEEEEEEETTSCGGGCCSTTCCEEEEEEEET--TEEEEESSSC
T ss_pred CCHHHHHHhCCcchHHHHHHHHHHHHHCCCCcEEEEEEcCCCCCccCCCCCCCEEEEEEEEC--CEEEEEecCC
Confidence 47999999999999999999999999999999999731 28999999975 6899999984
No 10
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=98.36 E-value=2.9e-07 Score=100.42 Aligned_cols=55 Identities=24% Similarity=0.681 Sum_probs=46.8
Q ss_pred HHhCC----ccchhhHHHHHHHHHHcCCCeEEEEeC--------------------------------CCceEEEEeeC-
Q 013381 72 VETKR----GRCGEWANCFTLYCRAFGYESRLILDF--------------------------------TDHVWTECFSQ- 114 (444)
Q Consensus 72 L~tR~----GrCgE~AnlF~~l~RAlG~~aR~V~d~--------------------------------~dHvW~EVys~- 114 (444)
+.+|+ |.|-.||..|+.+||++|++||+|-++ .-|+|+|+|..
T Consensus 303 ~~~~~PV~~G~C~~fA~v~~~~lR~lGIPaRvVtgy~sa~d~~~~l~v~~~~~~~g~~~~~~~~dsIW~~H~W~E~w~~r 382 (731)
T 1ex0_A 303 RSSENPVRYGQCWVFAGVFNTFLRCLGIPARIVTNYFSAHDNDANLQMDIFLEEDGNVNSKLTKDSVWNYHCWNEAWMTR 382 (731)
T ss_dssp HHHTSCEEEECHHHHHHHHHHHHHHHTCCEEEEEEEEECCSCTTBCEEEEEECTTSCBCTTTCCCCCEEEEEEEEEEECC
T ss_pred HhcCCccceeeehhHHHHHHHHHHhCCCCeeEEcccccCCCCCCcceeeEEecccCccccccccCccceeeEEEEEeccc
Confidence 34788 999999999999999999999999642 13999999995
Q ss_pred -----CCCCeEEeccCC
Q 013381 115 -----SLGRWMHLDPCE 126 (444)
Q Consensus 115 -----~~~rWIhVDPce 126 (444)
..+.|+.+||+.
T Consensus 383 pDLp~g~~GWq~~DpTp 399 (731)
T 1ex0_A 383 PDLPVGFGGWQAVDSTP 399 (731)
T ss_dssp TTSCTTCCEEEEEEEEE
T ss_pred cCCCCCCCCeEEEcCCC
Confidence 345699999995
No 11
>2i74_A Pngase; beta-sandwich, hydrolase; HET: MAN; 1.75A {Mus musculus} SCOP: b.18.1.29 PDB: 2g9f_A
Probab=96.90 E-value=2.8e-06 Score=79.47 Aligned_cols=102 Identities=17% Similarity=0.082 Sum_probs=75.6
Q ss_pred CccCCCCCceeecccceeeEeecch---hhhhccccCC-CchhhHHHHHHHHHHHHhhccCCCcccccccccCCCCchhH
Q 013381 252 SLSCSSCPVRVCIDEHVTTIYNAFS---SVLSHFVENN-VPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQK 327 (444)
Q Consensus 252 s~~~s~cp~r~c~dehv~~iY~a~~---~~ls~~~~~~-~~~~~a~~~~~~~r~~~~dlk~~~f~~R~~~~~~~~~~~~~ 327 (444)
++.|+.. ...+..+...|+.+. .+.++..+.- .|.++++.+..||||++.||||+ |++|++..+....+|
T Consensus 7 v~~p~e~---e~~~~~~~f~Y~~~~D~Y~r~~~n~~~i~gW~s~~~~~~nIfRkvE~Dwkmv-YLaR~Egt~~g~IsW-- 80 (189)
T 2i74_A 7 LFIPSEN---EKISKQFHLRYDIVRDRYIRVSDNNTNISGWENGVWKMESIFRKVEKDWNMV-YLARKEGSSFAYISW-- 80 (189)
T ss_dssp CBCCCHH---HHHHTEEEEEEETTTTEEEETTTTTEEEESGGGGCSSEESEEEEEETTTTEE-EEEECTTCSEEEEEE--
T ss_pred EEecchh---hhhCCEEEEEEEccCcEEEEecCCCccccchhhccccccceEEEEeCCCceE-EEEEcCCCCEEEEEE--
Confidence 4556665 566788999999988 5555543333 69999999999999999999999 999999888888777
Q ss_pred HHHhhhccHHHHHHhhcc--ccccCCCCCeEEEecC
Q 013381 328 IVHQLLPSIGHLLRVLSL--KSELNTDGRVDIVLAG 361 (444)
Q Consensus 328 ~~~~~lps~~~ll~~lsl--k~~~~~~g~~~~~~~~ 361 (444)
.|. |++.+-.+.-|.+ +.+...+|++.+.+..
T Consensus 81 kFd--l~~~gl~v~~i~i~~~sq~f~~G~v~~~~~~ 114 (189)
T 2i74_A 81 KFE--CGSAGLKVDTVSIRTSSQSFESGSVRWKLRS 114 (189)
T ss_dssp EEE--CGGGTEEEEEEEEECBEEECTTCEEEEEEEC
T ss_pred EEe--cCCCCcEEEEEEEEEeEEEecCCEEEEEEec
Confidence 443 5654444555444 3456689999665554
No 12
>4fgq_A Periplasmic protein; DUF920, protease, calcium binding, hydrolase; 1.65A {Legionella pneumophila subsp} PDB: 4fgo_A 4fgp_A
Probab=93.81 E-value=0.14 Score=48.02 Aligned_cols=83 Identities=17% Similarity=0.283 Sum_probs=62.0
Q ss_pred CCCHHHHHHhCCccchhhHHHHHHHHHHcCCCe---EEEE--e---CCCceEEEEeeCCCCCeEEeccCCCccCCCeeee
Q 013381 65 YNDPLKLVETKRGRCGEWANCFTLYCRAFGYES---RLIL--D---FTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYE 136 (444)
Q Consensus 65 Yn~p~kLL~tR~GrCgE~AnlF~~l~RAlG~~a---R~V~--d---~~dHvW~EVys~~~~rWIhVDPceg~iD~Pllye 136 (444)
+..|.+.|..+.|.|-|||.+=...++++|+++ |+++ + ...|++.=||....+.|+-+|-....| .
T Consensus 72 WatP~E~l~~g~GDCEDyaI~K~~~L~~~G~p~~~Lri~vVr~~~~~~~HaVL~v~~~~~~~~lVLDNl~~~I-----~- 145 (193)
T 4fgq_A 72 WKSPVEFIVDGGGDCEDFAIIKYFTLVAVGVPSDQLRITYAASLTLNQAHMVLSFYPTPESEPLILDSLESKI-----L- 145 (193)
T ss_dssp CCCHHHHHHHTEECHHHHHHHHHHHHHHHTCCGGGEEEEEEEETTTTEEEEEEEECSSTTSCCEEECSSCSSC-----E-
T ss_pred CCCcHhHhCCCCcCcHHHHHHHHHHHHHcCCCHHHeEEEEEEecCCCCCCEEEEEEECCCCCceEeeCCchhc-----c-
Confidence 357999999999999999999999999999996 6654 3 357999999986556688888764332 1
Q ss_pred cCccCccce--EEeecCCcc
Q 013381 137 KGWNKKLNY--VIAISKDGV 154 (444)
Q Consensus 137 ~gwgK~lsY--VIAFs~DGv 154 (444)
.|.+.-.| +.+|+..|+
T Consensus 146 -p~s~r~dl~p~~Sfn~~g~ 164 (193)
T 4fgq_A 146 -KASARPDLKPVYSFNAEGL 164 (193)
T ss_dssp -EGGGCTTEEEEEEECSSCE
T ss_pred -CchhcCCcceEEeeCCCCe
Confidence 24433333 566777664
No 13
>3lnb_A N-acetyltransferase family protein; arylamine N-acetyltransferase, NAT, acetyltrans acyltransferase; HET: COA; 2.01A {Bacillus anthracis}
Probab=68.42 E-value=7.3 Score=38.51 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=26.5
Q ss_pred HhCCccchhhHHHHHHHHHHcCCCeEEEE
Q 013381 73 ETKRGRCGEWANCFTLYCRAFGYESRLIL 101 (444)
Q Consensus 73 ~tR~GrCgE~AnlF~~l~RAlG~~aR~V~ 101 (444)
+.|-|-|-|-..+|..+|++|||+++.+.
T Consensus 93 ~~RGGyC~ElN~lf~~~L~~lGf~v~~~~ 121 (309)
T 3lnb_A 93 QKRGGLCYELNSLLYYFLMDCGFQVYKVA 121 (309)
T ss_dssp TCCCBCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCcchHHHHHHHHHHHHHcCCeEEEEe
Confidence 45889999999999999999999998885
No 14
>1w4t_A Arylamine N-acetyltransferase; 5- aminosalicylic acid, NAT, xenobiotic metabolism, acyltransferase; 1.95A {Pseudomonas aeruginosa} SCOP: d.3.1.5
Probab=64.96 E-value=4.4 Score=39.68 Aligned_cols=65 Identities=26% Similarity=0.408 Sum_probs=42.6
Q ss_pred HHH-HhCCccchhhHHHHHHHHHHcCCCeEEEEe-----CC--------CceEEEEeeCCCCCeEEeccCCCc--cCCCe
Q 013381 70 KLV-ETKRGRCGEWANCFTLYCRAFGYESRLILD-----FT--------DHVWTECFSQSLGRWMHLDPCEGI--YDRPL 133 (444)
Q Consensus 70 kLL-~tR~GrCgE~AnlF~~l~RAlG~~aR~V~d-----~~--------dHvW~EVys~~~~rWIhVDPceg~--iD~Pl 133 (444)
|++ +.|-|-|-|--.+|..+|++|||+++.+.. .. +|.=.=|-.++ ++| =||.--|. .-.|+
T Consensus 83 KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~l~arV~~~~~~~~~~~~~~H~~l~V~idg-~~y-lvDVGFG~~~~~~Pl 160 (299)
T 1w4t_A 83 KVVEGSRGGYCFELNSLFARLLLALGYELELLVARVRWGLPDDAPLTQQSHLMLRLYLAE-GEF-LVDVGFGSANPPRAL 160 (299)
T ss_dssp HHTTTTCCBCHHHHHHHHHHHHHHTTCEEEEEEEEECTTCCTTSCCCCEEEEEEEEEETT-EEE-EECSCSGGGCCSSCE
T ss_pred HHHhcCCCcchHhHHHHHHHHHHHcCCeEEEEEEEEEeCCCCcCCCCCCccEEEEEEECC-ceE-EEeCCCCCcCcCeeE
Confidence 444 568899999999999999999999998742 11 24434454443 346 46665443 34566
Q ss_pred eee
Q 013381 134 LYE 136 (444)
Q Consensus 134 lye 136 (444)
...
T Consensus 161 ~L~ 163 (299)
T 1w4t_A 161 PLP 163 (299)
T ss_dssp ESS
T ss_pred Ecc
Confidence 554
No 15
>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A*
Probab=64.72 E-value=4.5 Score=39.27 Aligned_cols=35 Identities=11% Similarity=0.267 Sum_probs=29.4
Q ss_pred CHHHHHH-----hCCccchhhHHHHHHHHHHcCCCeEEEE
Q 013381 67 DPLKLVE-----TKRGRCGEWANCFTLYCRAFGYESRLIL 101 (444)
Q Consensus 67 ~p~kLL~-----tR~GrCgE~AnlF~~l~RAlG~~aR~V~ 101 (444)
||..|++ .|-|-|-|--.+|..+|++|||+++.+.
T Consensus 56 d~~~l~~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~ 95 (295)
T 2ija_A 56 GLEAIFDQVVRRNRGGWCLQVNHLLYWALTTIGFETTMLG 95 (295)
T ss_dssp SHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHhcCCCcEEhHHHHHHHHHHHHHcCCcEEEEE
Confidence 5655443 5789999999999999999999998874
No 16
>1e2t_A NAT, N-hydroxyarylamine O-acetyltransferase; acetyl COA dependent; 2.8A {Salmonella typhimurium} SCOP: d.3.1.5
Probab=63.52 E-value=5.2 Score=38.71 Aligned_cols=66 Identities=24% Similarity=0.309 Sum_probs=44.7
Q ss_pred HHHH-HhCCccchhhHHHHHHHHHHcCCCeEEEEe-----------CCCceEEEEeeCCCCCeEEeccCCCc--cCCCee
Q 013381 69 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLILD-----------FTDHVWTECFSQSLGRWMHLDPCEGI--YDRPLL 134 (444)
Q Consensus 69 ~kLL-~tR~GrCgE~AnlF~~l~RAlG~~aR~V~d-----------~~dHvW~EVys~~~~rWIhVDPceg~--iD~Pll 134 (444)
.|++ +.|-|-|-|--.+|..+|++|||+++.+.. ..+|.=.=|-.++ ++| -||.--|. .-.|+.
T Consensus 61 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~~rV~~~~~~~~~~~~H~~l~V~idg-~~y-lvDVGFG~~~~~~Pl~ 138 (284)
T 1e2t_A 61 EKLLYARRGGYCFELNGLFERALRDIGFNVRSLLGRVILSHPASLPPRTHRLLLVDVED-EQW-IADVGFGGQTLTAPLR 138 (284)
T ss_dssp HHHTTTCCCBCHHHHHHHHHHHHHHTTCCEEEEEEEECTTCCSSCCCSCEEEEEEEETT-EEE-EECSCSCTTCCSSCEE
T ss_pred HHHhcCCCcEEhHHHHHHHHHHHHHCCCeEEEEEEEEecCCCCCCCCCccEEEEEEECC-ceE-EEecCCCccCcCceEE
Confidence 3444 457889999999999999999999999852 1246555555543 346 46765443 345665
Q ss_pred ee
Q 013381 135 YE 136 (444)
Q Consensus 135 ye 136 (444)
..
T Consensus 139 L~ 140 (284)
T 1e2t_A 139 LQ 140 (284)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 17
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A {Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A* 1gx3_A
Probab=62.37 E-value=4.8 Score=38.86 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=29.5
Q ss_pred CHHHHH-----HhCCccchhhHHHHHHHHHHcCCCeEEEE
Q 013381 67 DPLKLV-----ETKRGRCGEWANCFTLYCRAFGYESRLIL 101 (444)
Q Consensus 67 ~p~kLL-----~tR~GrCgE~AnlF~~l~RAlG~~aR~V~ 101 (444)
+|..|+ +.|-|-|-|--.+|..+|++|||+++.+.
T Consensus 56 d~~~l~~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~ 95 (278)
T 1w5r_A 56 SAEALFAKLVDRRRGGYQYEHNGLLGYVLEELGFEVERLS 95 (278)
T ss_dssp SHHHHHHHHTTTCCCBCHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHhcCCCceehHHHHHHHHHHHHHcCCeEEEEE
Confidence 455444 47889999999999999999999999874
No 18
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria, actyltransferase; 2.00A {Mycobacterium marinum} PDB: 2vfc_A* 3ltw_A*
Probab=61.21 E-value=5.1 Score=38.67 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=41.8
Q ss_pred HhCCccchhhHHHHHHHHHHcCCCeEEEEe-------------CCCceEEEEeeCCCCC--eEEeccCCCc--cCCCeee
Q 013381 73 ETKRGRCGEWANCFTLYCRAFGYESRLILD-------------FTDHVWTECFSQSLGR--WMHLDPCEGI--YDRPLLY 135 (444)
Q Consensus 73 ~tR~GrCgE~AnlF~~l~RAlG~~aR~V~d-------------~~dHvW~EVys~~~~r--WIhVDPceg~--iD~Plly 135 (444)
+.|-|-|-|--.+|..+|++|||+++.+.. ..+|.=.=|-.++ ++ | -||.--|. .-.|+..
T Consensus 64 ~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~~H~~l~V~idg-~~~~y-lvDVGFG~~~~~~Pl~L 141 (280)
T 2vfb_A 64 RRRGGYCYEHNGLIGYVLAELGYRVRRLAGRVVWLAPPDAPTPAQTHTVLAVTFPG-CQGPY-LVDVGFGGMTPTAPLRL 141 (280)
T ss_dssp TCCCBCHHHHHHHHHHHHHHHTCEEEEEEEEECTTCCTTSCCCCSCEEEEEEECTT-CSSCE-EECSCSGGGCCSSCEES
T ss_pred CCCceEhHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCCCCCCCCCCcEEEEEEECC-eEEEE-EEecCCCccCcCceEEc
Confidence 478899999999999999999999998742 1234445555443 35 6 45665443 2456555
Q ss_pred e
Q 013381 136 E 136 (444)
Q Consensus 136 e 136 (444)
.
T Consensus 142 ~ 142 (280)
T 2vfb_A 142 E 142 (280)
T ss_dssp C
T ss_pred c
Confidence 3
No 19
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Probab=60.56 E-value=5.1 Score=38.70 Aligned_cols=69 Identities=23% Similarity=0.242 Sum_probs=47.1
Q ss_pred CHHHHHH-----hCCccchhhHHHHHHHHHHcCCCeEEEEe------------CCCceEEEEeeCCCCCeEEeccCCCc-
Q 013381 67 DPLKLVE-----TKRGRCGEWANCFTLYCRAFGYESRLILD------------FTDHVWTECFSQSLGRWMHLDPCEGI- 128 (444)
Q Consensus 67 ~p~kLL~-----tR~GrCgE~AnlF~~l~RAlG~~aR~V~d------------~~dHvW~EVys~~~~rWIhVDPceg~- 128 (444)
+|..|.+ .|-|-|-|--.+|..+|++|||+++.+.. ..+|.=.=|-.++ ++| -||.--|.
T Consensus 56 d~~~l~~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~H~~l~V~idg-~~y-lvDVGFG~~ 133 (278)
T 2bsz_A 56 DLAALQDKIVLGGRGGYCFEHNLLFMHALKALGFEVGGLAARVLWGQSEDAITARSHMLLRVELDG-RTY-IADVGFGGL 133 (278)
T ss_dssp SHHHHHHHHTTSCCCBCHHHHHHHHHHHHHHHTCEEEEEEEEECSSCCSSSSCCCCEEEEEEEETT-EEE-EECSCCSSS
T ss_pred CHHHHHHHHHhCCCCeehHHHHHHHHHHHHHCCCeEEEEEEEEeeCCCCCCCCCCccEEEEEEECC-ceE-EEeCCCCcc
Confidence 5555544 58899999999999999999999998742 1245555565543 346 56776543
Q ss_pred -cCCCeeeec
Q 013381 129 -YDRPLLYEK 137 (444)
Q Consensus 129 -iD~Pllye~ 137 (444)
.-.|+....
T Consensus 134 ~~~~Pl~L~~ 143 (278)
T 2bsz_A 134 TLTAPLLLEP 143 (278)
T ss_dssp CCCSCEECCB
T ss_pred CcCceEEccC
Confidence 346766543
No 20
>3d9w_A Putative acetyltransferase; arylamine N-acetyltransferase, NAT, X-RAY diffraction, acyltransferase; 2.70A {Nocardia farcinica}
Probab=59.66 E-value=5.8 Score=38.64 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=29.9
Q ss_pred CHHHHHH-----hCCccchhhHHHHHHHHHHcCCCeEEEE
Q 013381 67 DPLKLVE-----TKRGRCGEWANCFTLYCRAFGYESRLIL 101 (444)
Q Consensus 67 ~p~kLL~-----tR~GrCgE~AnlF~~l~RAlG~~aR~V~ 101 (444)
+|..|++ .|-|-|-|-..+|..+|++|||+++.+.
T Consensus 65 d~~~l~~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~ 104 (293)
T 3d9w_A 65 DLATLQDKLVHSRRGGYCYENAGLFAAALERLGFGVTGHT 104 (293)
T ss_dssp SHHHHHHHHTSSSCCBCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHcCCCcChHHHHHHHHHHHHHcCCeEEEEE
Confidence 5665543 6889999999999999999999998885
No 21
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=58.08 E-value=7.3 Score=35.22 Aligned_cols=60 Identities=30% Similarity=0.723 Sum_probs=41.4
Q ss_pred CCCCCC--CCCCCccccCCCCChhhhhcCccEEEEEecCCCCCccccCCCCCHHHHHHhCCccchhhHHHHHHHHHHcCC
Q 013381 18 APPCDG--CSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGY 95 (444)
Q Consensus 18 ~P~C~~--Cg~~t~~~g~~~Pt~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~kLL~tR~GrCgE~AnlF~~l~RAlG~ 95 (444)
-|.|+. |+++....+. | .|+|..|+...-=|.|
T Consensus 43 Y~aC~~~~CnKKv~~~~~----------g-----~~~CekC~~~~~~~~~------------------------------ 77 (181)
T 1l1o_C 43 YQACPTQDCNKKVIDQQN----------G-----LYRCEKCDTEFPNFKY------------------------------ 77 (181)
T ss_dssp EEBCCSTTCCCBCEEETT----------T-----EEEETTTTEEESSCCE------------------------------
T ss_pred ECCCCchhcCCccccCCC----------C-----eEECCCCCCcCCCceE------------------------------
Confidence 488999 9997653331 1 5999999865433333
Q ss_pred CeEEEE-----eCCCceEEEEeeCCCCCeEEecc
Q 013381 96 ESRLIL-----DFTDHVWTECFSQSLGRWMHLDP 124 (444)
Q Consensus 96 ~aR~V~-----d~~dHvW~EVys~~~~rWIhVDP 124 (444)
||++ |.+.+.|+-+|++....=++...
T Consensus 78 --ry~l~~~i~D~Tg~~~~t~F~~~ae~ilG~sA 109 (181)
T 1l1o_C 78 --RMILSVNIADFQENQWVTCFQESAEAILGQNA 109 (181)
T ss_dssp --EEEEEEEEECSSCEEEEEEEHHHHHHHHSSCH
T ss_pred --EEEEEEEEEeCCCCEEEEEEhHHHHHHhCCCH
Confidence 6775 67889999999976555555544
No 22
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=51.07 E-value=10 Score=28.02 Aligned_cols=41 Identities=17% Similarity=0.383 Sum_probs=25.1
Q ss_pred cCCCCCCCCCCCc-cccCCCCChhhhhcCccEEEEEecCCCCCcccc
Q 013381 17 NAPPCDGCSNETV-GQGMGTPLPSEIQYGAARVELFRCKVCSKITRF 62 (444)
Q Consensus 17 n~P~C~~Cg~~t~-~~g~~~Pt~~E~~~ga~rVE~y~C~~C~~~~RF 62 (444)
+.-+|+.||+... +.-...=++|| ...=-|.|..||..-||
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE-----~mT~Fy~C~~Cg~~w~~ 49 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRSADE-----PMTTFVVCNECGNRWKF 49 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSS-----CCEEEEEESSSCCEEEC
T ss_pred CccCCCCCCCCEEEEEEecCcCCCC-----CceEEEEcCCCCCeEEe
Confidence 4568999998643 21111112343 23347999999997776
No 23
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=42.81 E-value=12 Score=27.63 Aligned_cols=38 Identities=26% Similarity=0.476 Sum_probs=21.0
Q ss_pred CCCCCCCCCCc-cccCCCCChhhhhcCccEEEEEecCCCCCccc
Q 013381 19 PPCDGCSNETV-GQGMGTPLPSEIQYGAARVELFRCKVCSKITR 61 (444)
Q Consensus 19 P~C~~Cg~~t~-~~g~~~Pt~~E~~~ga~rVE~y~C~~C~~~~R 61 (444)
-+|+.||.... ..-...-.+||- ..=-|.|..||..-+
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~rsadep-----~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTRAGDEP-----STIFYKCTKCGHTWR 54 (57)
T ss_dssp CCCTTTCCSEEEEEEECCSSSSCS-----SEEEEEESSSCCEEE
T ss_pred eECCCCCCCEEEEEEeecccCCCC-----CcEEEEcCCCCCEec
Confidence 57999998543 111111122221 123699999998543
No 24
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=42.15 E-value=9.3 Score=34.43 Aligned_cols=116 Identities=13% Similarity=0.240 Sum_probs=69.1
Q ss_pred eeEeecchhhhhccccCCC--------chhhHHHHHHHHHHHHhhc-cCCCcccccccccCCCCchhHHHHhh----hcc
Q 013381 269 TTIYNAFSSVLSHFVENNV--------PKSGAIELLKILKGILGDL-KKSPYKTRRVSLNSVPNNGQKIVHQL----LPS 335 (444)
Q Consensus 269 ~~iY~a~~~~ls~~~~~~~--------~~~~a~~~~~~~r~~~~dl-k~~~f~~R~~~~~~~~~~~~~~~~~~----lps 335 (444)
++||++.++.|...+.... =.-....+.+.+++...+- -+.=.-|=-++....+-+. +.+.++ ||-
T Consensus 35 G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s~g~~D~t~-eal~~~~~~~l~G 113 (178)
T 2pjk_A 35 EPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTDITV-ETIRKLFDREIEG 113 (178)
T ss_dssp CCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCHH-HHHGGGCSEECHH
T ss_pred CeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcchH-HHHHHHhcccCcc
Confidence 5888888866665544431 1112233444454443220 1111223333333333332 334444 556
Q ss_pred HHHHHHhhcccc---cc---------C-CCCCeEEEecCCccccccchh-hhHHHHHHHHHhcc
Q 013381 336 IGHLLRVLSLKS---EL---------N-TDGRVDIVLAGDPVKTSLSLP-VVFKALDDMIHDLN 385 (444)
Q Consensus 336 ~~~ll~~lslk~---~~---------~-~~g~~~~~~~~~p~~tsl~l~-~~~~~~~~~~~~~~ 385 (444)
++.++..+++|. -- + -+|...++|=|||+..-+++- +++++|..++..++
T Consensus 114 ~~~~~~~v~~~p~~~G~pa~lsr~~~G~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~~~~~~~ 177 (178)
T 2pjk_A 114 FSDVFRLVSFNDPEVKAAAYLTKASAGIIGKKIVYLLPGSPDAVKLALKELILPEVGHLVYLVR 177 (178)
T ss_dssp HHHHHHHHHHTSTTTGGGGGGCCCEEEEETTEEEEEECSCHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred hHHHhheeeccCCCCCCcchhheeEEEEECCEEEEECCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788999999987 21 1 257799999999999999987 88888888877664
No 25
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=41.10 E-value=10 Score=33.79 Aligned_cols=29 Identities=28% Similarity=0.616 Sum_probs=21.1
Q ss_pred cCCCCCCCCCCCccccCCCCChhhhhcCccEEEEEecCCCCCcc
Q 013381 17 NAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKIT 60 (444)
Q Consensus 17 n~P~C~~Cg~~t~~~g~~~Pt~~E~~~ga~rVE~y~C~~C~~~~ 60 (444)
+-|+||.|+++-..... ++|-|+.|+..-
T Consensus 26 ~lP~CP~C~seytYeDg---------------~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDG---------------ALLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCCCCCEECS---------------SSEEETTTTEEE
T ss_pred cCCCCCCCCCcceEecC---------------CeEECCcccccc
Confidence 46999999998554321 258999998764
No 26
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=41.06 E-value=5.8 Score=27.31 Aligned_cols=16 Identities=13% Similarity=0.891 Sum_probs=12.2
Q ss_pred cEEEEEecCCCCCccc
Q 013381 46 ARVELFRCKVCSKITR 61 (444)
Q Consensus 46 ~rVE~y~C~~C~~~~R 61 (444)
.+.+.|+|+.||..+.
T Consensus 2 k~~~fY~C~~CGnive 17 (36)
T 1dxg_A 2 NEGDVYKCELCGQVVK 17 (36)
T ss_dssp CTTCEEECTTTCCEEE
T ss_pred CcccEEEcCCCCcEEE
Confidence 3457899999987653
No 27
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=40.34 E-value=12 Score=35.71 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=28.3
Q ss_pred chhHHhhccCceeecCCCCCCCCCCCccccCCCCChhhhhcCccEEEEEecCCCCCccccCCCC
Q 013381 3 LICVLFILQYCRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYN 66 (444)
Q Consensus 3 ~~LL~WFK~~F~Wvn~P~C~~Cg~~t~~~g~~~Pt~~E~~~ga~rVE~y~C~~C~~~~RFPRYn 66 (444)
.+|++|.++. --|+.||+++..... + ....|+.|+. +.|||..
T Consensus 98 ~~l~~w~~~~------~fC~~CG~~~~~~~~----------~----~~~~C~~C~~-~~yp~~~ 140 (269)
T 1vk6_A 98 VQLAEFYRSH------KYCGYCGHEMYPSKT----------E----WAMLCSHCRE-RYYPQIA 140 (269)
T ss_dssp HHHHHHHHTT------SBCTTTCCBEEECSS----------S----SCEEESSSSC-EECCCCE
T ss_pred HHHHhhhhcC------CccccCCCcCccCCC----------c----eeeeCCCCCC-EecCCCC
Confidence 4688888763 249999998764211 1 1347999975 5688864
No 28
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=39.90 E-value=11 Score=37.29 Aligned_cols=51 Identities=18% Similarity=0.372 Sum_probs=32.9
Q ss_pred eecCCCCCCCCCCCccccCCCCChhhhhcCccEEEEEecCCCCCccccCCCCCHHHHHHhCCccchh
Q 013381 15 WVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGE 81 (444)
Q Consensus 15 Wvn~P~C~~Cg~~t~~~g~~~Pt~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~kLL~tR~GrCgE 81 (444)
| +...|+.||+.-... .... .++...--...|..|++.-+|+|. +.-.||+
T Consensus 180 ~-~~~~CPvCGs~P~~s-~l~~-----~g~~~G~R~l~Cs~C~t~W~~~R~---------~C~~Cg~ 230 (309)
T 2fiy_A 180 E-SRTLCPACGSPPMAG-MIRQ-----GGKETGLRYLSCSLCACEWHYVRI---------KCSHCEE 230 (309)
T ss_dssp T-TCSSCTTTCCCEEEE-EEEC---------CCEEEEEETTTCCEEECCTT---------SCSSSCC
T ss_pred c-cCCCCCCCCCcCcee-EEee-----cCCCCCcEEEEeCCCCCEEeecCc---------CCcCCCC
Confidence 6 678999999964321 1000 011234447899999999999995 4566665
No 29
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=39.64 E-value=12 Score=37.05 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=23.9
Q ss_pred cCCCCCCCCCCCccccCCCCChhhhhcCccEEEEEecCCCCCccc
Q 013381 17 NAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITR 61 (444)
Q Consensus 17 n~P~C~~Cg~~t~~~g~~~Pt~~E~~~ga~rVE~y~C~~C~~~~R 61 (444)
..-.|+.||+... ..+-....++..-+...+.++.|..|++...
T Consensus 221 ~R~~C~~Cg~~~~-l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK 264 (309)
T 2fiy_A 221 VRIKCSHCEESKH-LAYLSLEHDGQPAEKAVLRAETCPSCQGYLK 264 (309)
T ss_dssp CTTSCSSSCCCSC-CEEECCCC-CCCSTTCSEEEEEETTTTEEEE
T ss_pred cCcCCcCCCCCCC-eeEEEecCccccCCCcceEEEEcccccchHh
Confidence 4568999999632 2221111100000125577888999998654
No 30
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=37.32 E-value=7.6 Score=35.60 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=42.8
Q ss_pred hhccHHHHHHhhcccc-c---------cC-CCCCeEEEecCCccccccchhhhHHHHHHHHHhccc
Q 013381 332 LLPSIGHLLRVLSLKS-E---------LN-TDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNN 386 (444)
Q Consensus 332 ~lps~~~ll~~lslk~-~---------~~-~~g~~~~~~~~~p~~tsl~l~~~~~~~~~~~~~~~~ 386 (444)
.+|-++.++..+++|. . .+ .+|...++|-|+|+..-.++-++++.|..++..++.
T Consensus 118 ~l~G~~~~f~~v~~kpG~p~a~lsR~~~G~~~~~~V~~LPGnP~aa~~~~~~l~P~L~~~~~~l~g 183 (185)
T 3rfq_A 118 EILGIAEAIRASGLSAGIIDAGLSRGLAGVSGSTLVVNLAGSRYAVRDGMATLNPLAAHIIGQLSS 183 (185)
T ss_dssp ECHHHHHHHHHHHHHTTCHHHHTCCCCEEEETTEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCccHHHHHHHHhcCCCCCceeeeehhhcccCCeEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677888999999976 1 12 256789999999999988888888888888776653
No 31
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=34.97 E-value=13 Score=30.37 Aligned_cols=26 Identities=27% Similarity=0.811 Sum_probs=18.5
Q ss_pred CCCCCCCCCCcc-ccCCCCChhhhhcCccEEEEEecCCCCCc
Q 013381 19 PPCDGCSNETVG-QGMGTPLPSEIQYGAARVELFRCKVCSKI 59 (444)
Q Consensus 19 P~C~~Cg~~t~~-~g~~~Pt~~E~~~ga~rVE~y~C~~C~~~ 59 (444)
-+|+.||.+... .+. -+.+|+.|+..
T Consensus 28 y~Cp~CG~~~v~r~at---------------GiW~C~~Cg~~ 54 (83)
T 1vq8_Z 28 HACPNCGEDRVDRQGT---------------GIWQCSYCDYK 54 (83)
T ss_dssp EECSSSCCEEEEEEET---------------TEEEETTTCCE
T ss_pred CcCCCCCCcceeccCC---------------CeEECCCCCCE
Confidence 479999986542 221 17999999985
No 32
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=34.47 E-value=7.5 Score=32.32 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=23.4
Q ss_pred CCCCCCCCCCccccCCCCChhhhhcC---ccEEEEEecCCCCCccc
Q 013381 19 PPCDGCSNETVGQGMGTPLPSEIQYG---AARVELFRCKVCSKITR 61 (444)
Q Consensus 19 P~C~~Cg~~t~~~g~~~Pt~~E~~~g---a~rVE~y~C~~C~~~~R 61 (444)
-.|+.||+.+...+.. +..-+..+. ...|..+.|..||...-
T Consensus 3 M~Cp~Cg~~~~~~~~~-~~~~~~kg~~~~v~~v~~~~C~~CGE~~~ 47 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIK-DIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (133)
T ss_dssp CBCTTTSSSBEEEEEE-EEEEEETTEEEEEEEEEEEEESSSSCEEC
T ss_pred cCCCcCCCCceeeceE-EEEEEECCEEEEECCCceeECCCCCCEee
Confidence 4799999874322221 111111121 22357899999998753
No 33
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=32.85 E-value=18 Score=31.89 Aligned_cols=54 Identities=13% Similarity=0.332 Sum_probs=36.5
Q ss_pred hhccHHHHHHhhcccccc------------C-CCCCeEEEecCCccccccchh-hhHHHHHHHHHhcc
Q 013381 332 LLPSIGHLLRVLSLKSEL------------N-TDGRVDIVLAGDPVKTSLSLP-VVFKALDDMIHDLN 385 (444)
Q Consensus 332 ~lps~~~ll~~lslk~~~------------~-~~g~~~~~~~~~p~~tsl~l~-~~~~~~~~~~~~~~ 385 (444)
.++-+++++..+++|..- + -+|...++|-|+|+..-.++- .+++.|..++..++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~G~~~~~~i~~LPG~P~~~~~~~~~~v~P~L~h~~~~ir 177 (178)
T 3iwt_A 110 EIEGFSDVFRLVSFNDPEVKAAAYLTKASAGIIGKKIVYLLPGSPDAVKLALKELILPEVGHLVYLVR 177 (178)
T ss_dssp ECHHHHHHHHHHHHTSTTTGGGGGGCCCEEEEETTEEEEEECSCHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHhccccccccccccccceeeECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666666665431 1 267789999999998877775 56677777776654
No 34
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=31.97 E-value=42 Score=32.72 Aligned_cols=110 Identities=13% Similarity=0.191 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCc---cccCCC-----CChhhh-hcCccEEEEEecCCCCCccccCCCCCHHHHHHhC----CccchhhH-
Q 013381 18 APPCDGCSNETV---GQGMGT-----PLPSEI-QYGAARVELFRCKVCSKITRFPRYNDPLKLVETK----RGRCGEWA- 83 (444)
Q Consensus 18 ~P~C~~Cg~~t~---~~g~~~-----Pt~~E~-~~ga~rVE~y~C~~C~~~~RFPRYn~p~kLL~tR----~GrCgE~A- 83 (444)
...|+.||++.. ..|..+ ..+++. .......++++|..|+....-+.. ++..+.... .+.-..|.
T Consensus 12 ~~~C~~Cg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~~~~~~-~~~~~y~~~y~~~~~~~~~~~~ 90 (416)
T 4e2x_A 12 PTACRVCGGGVQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQLTEEV-PRDLMFHEVYPYHSSGSSVMRE 90 (416)
T ss_dssp CEECTTTSCEEEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEEESSCC-CHHHHSSTTCCCCGGGCHHHHH
T ss_pred CCcCCCCCCeeeeeeECCCCCccccCCChhhcCccceecceEEECCCCCceeecCcC-CHHHhccCCccCcCcCCHHHHH
Confidence 346999999821 122211 112222 234457899999999976554443 566555311 12212222
Q ss_pred ---HHHHHHHHHcCCC-eEEEEeC--CCceEEEEeeCCCCCeEEeccCCCc
Q 013381 84 ---NCFTLYCRAFGYE-SRLILDF--TDHVWTECFSQSLGRWMHLDPCEGI 128 (444)
Q Consensus 84 ---nlF~~l~RAlG~~-aR~V~d~--~dHvW~EVys~~~~rWIhVDPceg~ 128 (444)
...-.+++.+++. ..-|+|. .+=.++........+.+++|+....
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~ 141 (416)
T 4e2x_A 91 HFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGV 141 (416)
T ss_dssp HHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHH
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHH
Confidence 2233445566654 4456662 2222333333333468889997543
No 35
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=31.26 E-value=14 Score=32.79 Aligned_cols=115 Identities=11% Similarity=0.163 Sum_probs=66.2
Q ss_pred eeEeecchhhhhccccCCC---------chhhHHHHHHHHHHHHhhccCCCcccccccccCCCCchhHHHHhh----hcc
Q 013381 269 TTIYNAFSSVLSHFVENNV---------PKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQL----LPS 335 (444)
Q Consensus 269 ~~iY~a~~~~ls~~~~~~~---------~~~~a~~~~~~~r~~~~dlk~~~f~~R~~~~~~~~~~~~~~~~~~----lps 335 (444)
.+||++.++.|.....+.. .-. ..+.+.+++.+.+--+.=.-|==++....+-+. +.+.++ +|-
T Consensus 22 G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd--~~i~~al~~a~~~~~DlVittGG~s~g~~D~t~-eal~~~~~~~lpG 98 (164)
T 3pzy_A 22 GEYEDRCGPIITEWLAQQGFSSAQPEVVADG--SPVGEALRKAIDDDVDVILTSGGTGIAPTDSTP-DQTVAVVDYLIPG 98 (164)
T ss_dssp ----CCHHHHHHHHHHHTTCEECCCEEECSS--HHHHHHHHHHHHTTCSEEEEESCCSSSTTCCHH-HHHHTTCSEECHH
T ss_pred CceeeHHHHHHHHHHHHCCCEEEEEEEeCCH--HHHHHHHHHHHhCCCCEEEECCCCCCCCCccHH-HHHHHHhcccCcc
Confidence 5788888866665544321 222 445555555442111111223333333333332 233444 567
Q ss_pred HHHHHHhhcccccc---------C-CCCCeEEEecCCccccccchhhhHHHHHHHHHhccc
Q 013381 336 IGHLLRVLSLKSEL---------N-TDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNN 386 (444)
Q Consensus 336 ~~~ll~~lslk~~~---------~-~~g~~~~~~~~~p~~tsl~l~~~~~~~~~~~~~~~~ 386 (444)
++.++...++|..= + .++...++|=|||+..-.++-+++++|..++..++.
T Consensus 99 ~~~~~~~~~~~~~p~a~lsr~~~G~~~~~~v~~LPG~P~aa~~~~~~v~P~l~~~~~~~~g 159 (164)
T 3pzy_A 99 LAEAIRRSGLPKVPTSVLSRGVCGVAGQTLIVNLPGSPGGVRDGLGVLAGVLDHALDQLAG 159 (164)
T ss_dssp HHHHHHHTTTTTCGGGGGCCCCEEEETTEEEEEECSSHHHHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHhhccCCCCccccchhhhcccCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78889888888521 1 246799999999999888888888888888877754
No 36
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=31.15 E-value=15 Score=31.56 Aligned_cols=17 Identities=29% Similarity=0.686 Sum_probs=15.0
Q ss_pred EEEEecCCCCCccccCC
Q 013381 48 VELFRCKVCSKITRFPR 64 (444)
Q Consensus 48 VE~y~C~~C~~~~RFPR 64 (444)
.=+|.|..||...|||-
T Consensus 92 ~vv~tCl~Cg~~kR~p~ 108 (120)
T 1x0t_A 92 HVVITCLECGYIMRYPY 108 (120)
T ss_dssp EEEEEETTTCCEEEEEC
T ss_pred EEEEECCCCCCEEEEcc
Confidence 45789999999999994
No 37
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.25 E-value=32 Score=28.23 Aligned_cols=29 Identities=17% Similarity=0.575 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCccccCCCCChhhhhcCccEEEEEecCCCCCcc
Q 013381 18 APPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKIT 60 (444)
Q Consensus 18 ~P~C~~Cg~~t~~~g~~~Pt~~E~~~ga~rVE~y~C~~C~~~~ 60 (444)
+-.|+.||...+.- ..|=+++|.+|+...
T Consensus 35 ky~CpfCGk~~vkR--------------~a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 35 KHTCPVCGRKAVKR--------------ISTGIWQCQKCGATF 63 (83)
T ss_dssp CBCCSSSCSSCEEE--------------EETTEEEETTTCCEE
T ss_pred ccCCCCCCCceeEe--------------cCcCeEEcCCCCCEE
Confidence 34799999864311 112279999998653
No 38
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=26.56 E-value=39 Score=28.27 Aligned_cols=28 Identities=29% Similarity=0.624 Sum_probs=18.4
Q ss_pred CCCCCCCCCCccccCCCCChhhhhcCccEEEEEecCCCCCcc
Q 013381 19 PPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKIT 60 (444)
Q Consensus 19 P~C~~Cg~~t~~~g~~~Pt~~E~~~ga~rVE~y~C~~C~~~~ 60 (444)
-.|+.||...+.- ..|=+++|.+|+...
T Consensus 37 y~CpfCgk~~vkR--------------~a~GIW~C~~Cg~~~ 64 (92)
T 3iz5_m 37 YFCEFCGKFAVKR--------------KAVGIWGCKDCGKVK 64 (92)
T ss_dssp BCCTTTCSSCBEE--------------EETTEEECSSSCCEE
T ss_pred ccCcccCCCeeEe--------------cCcceEEcCCCCCEE
Confidence 4799999864311 112379999998653
No 39
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=26.09 E-value=18 Score=33.06 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=40.8
Q ss_pred eeecCCCCCCCCCCCccccCCCCChhhhhcCccEEEEEecCCCCCccccCCCCCHHHHHHhCCccchhhHHHHHHHHHHc
Q 013381 14 RWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAF 93 (444)
Q Consensus 14 ~Wvn~P~C~~Cg~~t~~~g~~~Pt~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~kLL~tR~GrCgE~AnlF~~l~RAl 93 (444)
.|+. |.|+.|.++....+. ..|+|.+|+.. .=|.
T Consensus 39 ~~~Y-~ACp~CnKKV~~~~~---------------g~~~CekC~~~-~~~~----------------------------- 72 (172)
T 3u50_C 39 KLYY-YRCTCQGKSVLKYHG---------------DSFFCESCQQF-INPQ----------------------------- 72 (172)
T ss_dssp CCEE-EECTTSCCCEEEETT---------------TEEEETTTTEE-CCCE-----------------------------
T ss_pred cEEe-hhchhhCCEeeeCCC---------------CeEECCCCCCC-CCce-----------------------------
Confidence 4444 889999987653332 17999999987 3332
Q ss_pred CCCeEEEE-----eCCCceEEEEeeCCCCCeEEe
Q 013381 94 GYESRLIL-----DFTDHVWTECFSQSLGRWMHL 122 (444)
Q Consensus 94 G~~aR~V~-----d~~dHvW~EVys~~~~rWIhV 122 (444)
.||++ |.+.+.|+-+|.+....=++.
T Consensus 73 ---~RYil~~~i~D~TG~~wvt~F~e~ae~ilG~ 103 (172)
T 3u50_C 73 ---VHLMLRAFVQDSTGTIPVMIFDQQSSQLINQ 103 (172)
T ss_dssp ---EEECEEEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred ---EEEEEEEEEEeCCCCEEEEEEhHHHHHHhCC
Confidence 34553 789999999997655544444
No 40
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=26.08 E-value=18 Score=31.28 Aligned_cols=18 Identities=28% Similarity=0.707 Sum_probs=15.6
Q ss_pred EEEEecCCCCCccccCCC
Q 013381 48 VELFRCKVCSKITRFPRY 65 (444)
Q Consensus 48 VE~y~C~~C~~~~RFPRY 65 (444)
.=+|+|..||...|||--
T Consensus 87 ~vv~tCl~Cg~~kR~p~~ 104 (123)
T 2k3r_A 87 HIVVKCLECGHIMRYPYI 104 (123)
T ss_dssp EEEEEETTTTEEEEEECC
T ss_pred EEEEECCCCCCEEEEecC
Confidence 457899999999999963
No 41
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=25.36 E-value=32 Score=33.51 Aligned_cols=36 Identities=28% Similarity=0.648 Sum_probs=23.1
Q ss_pred ee-cCCCCCCCCCCC-ccccCCCCChhhhhcCccEEEEEecCCCCCccc
Q 013381 15 WV-NAPPCDGCSNET-VGQGMGTPLPSEIQYGAARVELFRCKVCSKITR 61 (444)
Q Consensus 15 Wv-n~P~C~~Cg~~t-~~~g~~~Pt~~E~~~ga~rVE~y~C~~C~~~~R 61 (444)
|| .+--|+.||+.. ..-+...|-+| |.|..|+..-.
T Consensus 30 Wv~~n~yCPnCG~~~l~~f~nN~PVaD-----------F~C~~C~EeyE 67 (257)
T 4esj_A 30 WVYRQSYCPNCGNNPLNHFENNRPVAD-----------FYCNHCSEEFE 67 (257)
T ss_dssp HHHHHCCCTTTCCSSCEEC----CCCE-----------EECTTTCCEEE
T ss_pred HHHHCCcCCCCCChhhhhccCCCcccc-----------cccCCcchhhe
Confidence 54 346799999964 46666666554 99999997543
No 42
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=24.36 E-value=44 Score=27.93 Aligned_cols=29 Identities=24% Similarity=0.619 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCccccCCCCChhhhhcCccEEEEEecCCCCCcc
Q 013381 18 APPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKIT 60 (444)
Q Consensus 18 ~P~C~~Cg~~t~~~g~~~Pt~~E~~~ga~rVE~y~C~~C~~~~ 60 (444)
+-.|+.||...+.- ..|=+++|.+|+...
T Consensus 36 ky~CpfCgk~~vkR--------------~a~GIW~C~~C~~~~ 64 (92)
T 3izc_m 36 RYDCSFCGKKTVKR--------------GAAGIWTCSCCKKTV 64 (92)
T ss_dssp CCCCSSSCSSCCEE--------------EETTEEECTTTCCEE
T ss_pred CCcCCCCCCceeee--------------cccceEEcCCCCCEE
Confidence 45799999864310 112279999998643
No 43
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=24.08 E-value=13 Score=33.37 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=11.6
Q ss_pred cchhHHhhccCce
Q 013381 2 NLICVLFILQYCR 14 (444)
Q Consensus 2 ~~~LL~WFK~~F~ 14 (444)
||.+|.|||.+|.
T Consensus 94 NlEFlQWfkkf~d 106 (145)
T 4abo_I 94 NLEFVQWAKRFWD 106 (145)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999874
No 44
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.98 E-value=30 Score=25.49 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCccccCCCCChhhhhcCccEEEEEecCCCCCc
Q 013381 18 APPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKI 59 (444)
Q Consensus 18 ~P~C~~Cg~~t~~~g~~~Pt~~E~~~ga~rVE~y~C~~C~~~ 59 (444)
..-||.||+.....-. -+.+.|..||-.
T Consensus 19 ~k~CP~CG~~~fm~~~--------------~~R~~C~kCG~t 46 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADH--------------GDRWACGKCGYT 46 (50)
T ss_dssp SEECSSSCSSCEEEEC--------------SSEEECSSSCCE
T ss_pred cccCCCCCCceEEecC--------------CCeEECCCCCCE
Confidence 3569999986442211 146899999853
No 45
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=23.69 E-value=46 Score=24.95 Aligned_cols=42 Identities=10% Similarity=0.142 Sum_probs=25.3
Q ss_pred hHHhhc-cCcee-ecCCCCCCCCCCCccccCCCCChhhhhcCccEEEEEecCCCCCcc
Q 013381 5 CVLFIL-QYCRW-VNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKIT 60 (444)
Q Consensus 5 LL~WFK-~~F~W-vn~P~C~~Cg~~t~~~g~~~Pt~~E~~~ga~rVE~y~C~~C~~~~ 60 (444)
.|.||| .+-+= .....||.||+....... ...|.|..|+-..
T Consensus 3 ~~~~y~v~~gki~~~~~fCPkCG~~~~ma~~--------------~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 3 KRELYEIADGKLVRKHRFCPRCGPGVFLAEH--------------ADRYSCGRCGYTE 46 (55)
T ss_dssp CCCCCCCCCCCCCCSSCCCTTTTTTCCCEEC--------------SSEEECTTTCCCE
T ss_pred eEEEEEEcCCEEEEccccCcCCCCceeEecc--------------CCEEECCCCCCEE
Confidence 466777 23110 135789999996542211 1289999998753
No 46
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=22.92 E-value=36 Score=27.27 Aligned_cols=27 Identities=26% Similarity=0.641 Sum_probs=17.7
Q ss_pred CCCCCCCCCCCcc-ccCCCCChhhhhcCccEEEEEecCCCCCc
Q 013381 18 APPCDGCSNETVG-QGMGTPLPSEIQYGAARVELFRCKVCSKI 59 (444)
Q Consensus 18 ~P~C~~Cg~~t~~-~g~~~Pt~~E~~~ga~rVE~y~C~~C~~~ 59 (444)
+-.|+.||...+. ++ |=+.+|.+|+..
T Consensus 26 ky~C~fCgk~~vkR~a---------------~GIW~C~~C~~~ 53 (72)
T 3jyw_9 26 RYDCSFCGKKTVKRGA---------------AGIWTCSCCKKT 53 (72)
T ss_dssp CBCCSSCCSSCBSBCS---------------SSCBCCSSSCCC
T ss_pred CccCCCCCCceeEecC---------------CCeEECCCCCCE
Confidence 3469999986431 11 226889999864
No 47
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=21.74 E-value=36 Score=29.57 Aligned_cols=37 Identities=22% Similarity=0.515 Sum_probs=22.3
Q ss_pred CCCCCCCCCCc-cccCCCCChhhhhcCccEEEEEecCCCCCccc--cCCCCCHHH
Q 013381 19 PPCDGCSNETV-GQGMGTPLPSEIQYGAARVELFRCKVCSKITR--FPRYNDPLK 70 (444)
Q Consensus 19 P~C~~Cg~~t~-~~g~~~Pt~~E~~~ga~rVE~y~C~~C~~~~R--FPRYn~p~k 70 (444)
-.|+.||.... -.+ |.+++|.+|+...- =-.++.|.-
T Consensus 61 ytCPfCGk~~vKR~a---------------vGIW~C~~Cgk~fAGGAy~~~T~~~ 100 (116)
T 3cc2_Z 61 HACPNCGEDRVDRQG---------------TGIWQCSYCDYKFTGGSYKPETPGG 100 (116)
T ss_dssp EECSSSCCEEEEEEE---------------TTEEEETTTCCEEECCSSSSSCHHH
T ss_pred CcCCCCCCceeEecC---------------ceeEECCCCCCEEECCCcccccchh
Confidence 36999998533 222 13899999997632 134455443
No 48
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=21.17 E-value=33 Score=31.88 Aligned_cols=37 Identities=30% Similarity=0.458 Sum_probs=22.0
Q ss_pred eeecCCCCCCCCCCCccccCCCCChhhhhcCccEEEEEecCCCCCccccC
Q 013381 14 RWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFP 63 (444)
Q Consensus 14 ~Wvn~P~C~~Cg~~t~~~g~~~Pt~~E~~~ga~rVE~y~C~~C~~~~RFP 63 (444)
.|...-+||.||+...+.=. + .| -+.|.+||....++
T Consensus 10 ~~~~~~~CP~Cg~~d~~~~~-----~---dg-----~~~C~~Cg~~~~~~ 46 (255)
T 1nui_A 10 VFLYHIPCDNCGSSDGNSLF-----S---DG-----HTFCYVCEKWTAGN 46 (255)
T ss_dssp CEEEEECCSSSCCSSCEEEE-----T---TS-----CEEETTTCCEEC--
T ss_pred ceecCCcCCCCCCCCCceEe-----C---CC-----CeecccCCCcCCCc
Confidence 34457799999985321100 0 12 28999999875443
No 49
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=20.32 E-value=23 Score=27.64 Aligned_cols=41 Identities=15% Similarity=0.351 Sum_probs=22.3
Q ss_pred CCCCCCCCCCccccCCCCChhhhhcC---ccEEEEEecCCCCCcc
Q 013381 19 PPCDGCSNETVGQGMGTPLPSEIQYG---AARVELFRCKVCSKIT 60 (444)
Q Consensus 19 P~C~~Cg~~t~~~g~~~Pt~~E~~~g---a~rVE~y~C~~C~~~~ 60 (444)
-.|+.||+.+...+..+ -+=+..+. ...|.-+.|+.||...
T Consensus 3 m~Cp~Cg~~~l~~~~~~-~~~~~~G~~~~I~~Vp~~~C~~CGE~~ 46 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKD-IPYTFRGRKTVLKGIHGLYCVHCEESI 46 (78)
T ss_dssp CBCTTTSSSBEEEEEEE-EEEEETTEEEEEEEEEEEEETTTCCEE
T ss_pred eECCCCCCCeeEeEEEE-EEEEECCEEEEEcCceeEECCCCCCEE
Confidence 36999998643222211 00111111 1346779999999754
Done!