BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013382
         (444 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EBF|X Chain X, Crystal Structures Reveal A Thiol-Protease Like Catalytic
           Triad In The C-Terminal Region Of Pasteurella Multocida
           Toxin
          Length = 746

 Score = 37.4 bits (85), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 18/89 (20%)

Query: 357 PTAEKWMEK---------LEESEPKRKLSIKAGIVTVALFVGYLWYECIYKLDKVTYNKY 407
           P  E W E          L ES+ K  LS K  I+  +L++G+ + E  Y +        
Sbjct: 224 PAYESWNEGSNSALLPGLLRESQSKGMLS-KCRIIENSLYIGHSYEEMFYSI-------- 274

Query: 408 HPYTSWIPITYVLFIFYFFSLVKHLSGSL 436
            PY++ +   Y L+ F FFS+++ + G L
Sbjct: 275 SPYSNQVGGPYELYPFTFFSMLQEVQGDL 303


>pdb|2EBH|X Chain X, Crystal Structures Reveal A Thiol-Protease Like Catalytic
           Triad In The C-Terminal Region Of Pasteurella Multocida
           Toxin
          Length = 746

 Score = 37.4 bits (85), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 18/89 (20%)

Query: 357 PTAEKWMEK---------LEESEPKRKLSIKAGIVTVALFVGYLWYECIYKLDKVTYNKY 407
           P  E W E          L ES+ K  LS K  I+  +L++G+ + E  Y +        
Sbjct: 224 PAYESWNEGSNSALLPGLLRESQSKGMLS-KCRIIENSLYIGHSYEEMFYSI-------- 274

Query: 408 HPYTSWIPITYVLFIFYFFSLVKHLSGSL 436
            PY++ +   Y L+ F FFS+++ + G L
Sbjct: 275 SPYSNQVGGPYELYPFTFFSMLQEVQGDL 303


>pdb|2EC5|A Chain A, Crystal Structures Reveal A Thiol-Protease Like Catalytic
           Triad In The C-Terminal Region Of Pasteurella Multocida
           Toxin
 pdb|2EC5|B Chain B, Crystal Structures Reveal A Thiol-Protease Like Catalytic
           Triad In The C-Terminal Region Of Pasteurella Multocida
           Toxin
          Length = 746

 Score = 37.4 bits (85), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 18/89 (20%)

Query: 357 PTAEKWMEK---------LEESEPKRKLSIKAGIVTVALFVGYLWYECIYKLDKVTYNKY 407
           P  E W E          L ES+ K  LS K  I+  +L++G+ + E  Y +        
Sbjct: 224 PAYESWNEGSNSALLPGLLRESQSKGMLS-KCRIIENSLYIGHSYEEMFYSI-------- 274

Query: 408 HPYTSWIPITYVLFIFYFFSLVKHLSGSL 436
            PY++ +   Y L+ F FFS+++ + G L
Sbjct: 275 SPYSNQVGGPYELYPFTFFSMLQEVQGDL 303


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.143    0.464 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,108,343
Number of Sequences: 62578
Number of extensions: 516568
Number of successful extensions: 1107
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1104
Number of HSP's gapped (non-prelim): 3
length of query: 444
length of database: 14,973,337
effective HSP length: 102
effective length of query: 342
effective length of database: 8,590,381
effective search space: 2937910302
effective search space used: 2937910302
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.0 bits)