Query 013382
Match_columns 444
No_of_seqs 120 out of 133
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:17:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013382.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013382hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1699 O-acetyltransferase [G 100.0 6E-136 1E-140 1015.8 23.5 423 1-432 7-438 (442)
2 PF07779 Cas1_AcylT: 10 TM Acy 100.0 4E-116 9E-121 913.8 31.7 320 98-434 70-405 (488)
3 PF11877 DUF3397: Protein of u 77.1 2.1 4.5E-05 37.7 2.7 28 222-249 80-107 (116)
4 PF03348 Serinc: Serine incorp 46.9 1E+02 0.0022 33.2 8.9 42 265-306 86-131 (429)
5 KOG2592 Tumor differentially e 32.9 4.3E+02 0.0093 28.9 10.7 45 262-306 85-133 (426)
6 KOG1699 O-acetyltransferase [G 31.2 44 0.00096 35.7 3.2 122 286-414 301-426 (442)
7 PF01757 Acyl_transf_3: Acyltr 23.9 5.7E+02 0.012 23.5 11.6 63 174-236 2-82 (340)
8 PF07263 DMP1: Dentin matrix p 22.7 36 0.00079 37.4 0.8 11 174-184 28-38 (514)
9 PF12459 DUF3687: D-Ala-teicho 19.7 56 0.0012 24.7 1.0 16 185-200 23-41 (42)
10 PF10065 DUF2303: Uncharacteri 14.1 1.1E+02 0.0024 31.0 1.9 29 157-185 99-127 (276)
No 1
>KOG1699 consensus O-acetyltransferase [General function prediction only]
Probab=100.00 E-value=6.3e-136 Score=1015.75 Aligned_cols=423 Identities=48% Similarity=0.837 Sum_probs=411.9
Q ss_pred CCcCCCCCccchhhhhh-----HHHHHHHHHHHHHHhhhcccCCcccccccchhhhhcccccccchhhhhcCC-CCcccc
Q 013382 1 MVVFRPITPGQVSFLLG-----IIPVFVAWIYSEFLEYKKVSSHTKVHSDTNLVELEKETIKEDDRAVLLEGG-LSRSAS 74 (444)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~ 74 (444)
|++++||||||.++.|| ++|.+++|+|+|.++++|..++.|.|+|.||.|+.+...|++|++.++|+| +.++++
T Consensus 7 ~ia~g~i~~~ldg~~l~~~~~~~~~~il~n~Ycn~~~~~~dg~cc~~~~p~tlvqi~a~a~f~l~~~~~L~~~~lhr~a~ 86 (442)
T KOG1699|consen 7 LIAQGTIMESLDGLHLPESSRETTAMILMNVYCNKILKPVDGSCCQPRPPVTLIQILAAAFFTLSIIGYLIFYILHRNAH 86 (442)
T ss_pred hhccCCCCcccceeecccccchhHHHHHHHHHHHHhccCCCCCcCCCCCCccHHHHHHHHHHhhhHHHHHHhhhhhcCcc
Confidence 57889999999999999 999999999999999999999999999999999999999999999999976 899999
Q ss_pred cccccccccccchhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCChhhHHHHHHHHHHHHHHhhc
Q 013382 75 ARLLSSSIKTNLIRFMTMDDAFLLENRATLRAMAEFGAILFYFYICDRTNLLGDSTKNYNRDLFLFLYLLLVIVSAMTSL 154 (444)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~al~~fg~il~YfylcDRT~~F~K~~K~ys~~~F~~l~~ll~~v~~l~sl 154 (444)
+|..+.++.++..|+..++++++.|+|.+|||+++||+||+|||+||||++|+||+|.|++|+|+++ ++++
T Consensus 87 ~k~kp~t~~~s~~~~~~~~~Sp~~~l~all~A~~~lglImaYFYicDRtnlf~kenK~Y~~~~F~~~---------i~~~ 157 (442)
T KOG1699|consen 87 RKNKPCTDLESGEEKKNIINSPVSSLEALLQAFSKLGLIMAYFYMCDRTNLFMKENKFYTHSSFFIP---------ITYL 157 (442)
T ss_pred ccCCCcccccchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhhcccHhhhhhccccccchhhHHh---------HHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999976 4677
Q ss_pred cccCCCCCCCCccccccCchhhhHhHHHHHHHHHHHHhccch---hhhHHHHHHHHHHHhhcccCceEEEEecCCCcHHH
Q 013382 155 KKHNDKSPFSGKTIQYLNRHQTEEWKGWMQVLFLMYHYFAAT---EIYNAIRIFIAAYVWMTGFGNFSYYYIRKDFSLPR 231 (444)
Q Consensus 155 ~~~~~~s~~~gk~~~~LnRdQTeEWKGWMQ~~iLiYHy~gAS---~IYn~IRvlVAAYlFmTGYGhfsYf~~k~Dfsl~R 231 (444)
++++|++|.+||.+++||||||||||||||+++|||||+||| +|||+|||+||||+||||||||||||.|||||+.|
T Consensus 158 ~~~~~~~~~~~k~~~~LNR~QTdEwkGWmqlv~LiYh~~~A~~~~~iy~~Irv~Ia~Yv~mTGyg~Fsy~~ir~df~~~R 237 (442)
T KOG1699|consen 158 LKLGDFSPENGKSTKVLNRHQTDEWKGWMQLVFLIYHYFGASTFLPIYMHIRVLIAAYVFMTGYGHFSYYWIRGDFGLAR 237 (442)
T ss_pred HHhccccCCCCceeEEechhhhHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCceEEEEEeCCchHHH
Confidence 789999999999999999999999999999999999999996 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccCCceEEEechhhHHHHHHHHHhheecccccCcchHHHHHHHHHHHHHHhhhcccccchhc
Q 013382 232 FAQMMWRLNFFVAFCCIVLNNDYMLYYICPMHTLFTIMVYGAVGIFNKYNEIGSVMIVKILACFLVVILIWEIPGVFDIF 311 (444)
Q Consensus 232 ~~qvl~RLNfLvv~Lc~vMn~~Y~~YYf~PLvSfWFlvVY~tlai~~~~N~~~~~l~~Ki~~~~~ii~il~~s~~vFe~v 311 (444)
++|||||||||++++|++||||||+||||||||+|++|||+++|+.||+|+.+++++.|+..|++++..+|+.||+||+.
T Consensus 238 f~Q~m~RlNFlvv~~Civmn~~Y~~YY~~Pl~tl~~lmVY~aL~l~~~~~e~~sv~a~~~~~~~Lv~~~~~~i~g~f~~f 317 (442)
T KOG1699|consen 238 FCQMMFRLNFLVVFLCIVMNRPYQFYYFVPLHTLWTLMVYGALALWPQINEIASVMALKLHSCFLVVICLWEIPGVFEIF 317 (442)
T ss_pred HHHHHHHHHHHHhhheeEeCCcceEEEEehHHHHHHHHHHHHHhccHhhhhhhhhhhhHHHHHHHHHHHHHHhhhHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhcccCCCCCCCCCcceeeEeecCchHHHHHHHHHHHHhhhHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHh
Q 013382 312 WSPLTFILGYTDPAKPDLPRLHEWHFRSGLDRYIWIIGMIYAYYHPTAEKWMEKLEESEPKRKLSIKAGIVTVALFVGYL 391 (444)
Q Consensus 312 f~P~~~lf~~~~~~~~~~~~l~EW~FR~~LDryiv~~GMl~A~~~~~~~~~~~~l~~~~~~~r~~~k~~i~sv~~~~~y~ 391 (444)
|+|+.++.+++||+|++.+..|||||||+||||+|++||++|+.||++|||++++|+.+.+++.++|+.+++++++++|.
T Consensus 318 ~s~~~f~~~~~~P~k~~f~~~hEWwfr~~LDRYi~~~GMiyA~~~~~vek~~~~~e~~~~~~~~~~~s~~v~i~s~vg~~ 397 (442)
T KOG1699|consen 318 WSPLFFLLGYNDPAKPLFPLLHEWWFRWGLDRYIWIIGMIYAYYHPTVEKWMEKLEECEGKLFSSIKSSIVTILSLVGYG 397 (442)
T ss_pred hhhHHHHHhcCCccchhhhhHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheeeecCchhhccccCccchHHHHHHHHHhhhhhhhhcc
Q 013382 392 WYECIYKLDKVTYNKYHPYTSWIPITYVLFIFYFFSLVKHL 432 (444)
Q Consensus 392 w~~~~~~~~K~~YN~~HPYiS~IPIl~fI~lrn~~~~~r~~ 432 (444)
||...++.||++||++|||+|||||++|+.+||+.++.|..
T Consensus 398 ~y~~~~~~n~~~~ne~Hpy~s~IpI~~~~~~rni~g~~r~~ 438 (442)
T KOG1699|consen 398 WYWSIYCMNKQNCNEYHPYTSWIPITGYVVLRNISGILRTR 438 (442)
T ss_pred HHHHHHHhhHHhhhhcCCcceEeeeehheeecccceeEEEe
Confidence 99888888999999999999999999999999999888864
No 2
>PF07779 Cas1_AcylT: 10 TM Acyl Transferase domain found in Cas1p; InterPro: IPR012419 The members of this family are sequences that are similar to a region of Cas1p protein (Q8X227 from SWISSPROT). This is an O-acetyltransferase that in Cryptococcus neoformans var. neoformans was shown to be required for O-acetylation of its capsular polysaccharide []. The capsule is this organism's most obvious virulence factor [].
Probab=100.00 E-value=4e-116 Score=913.84 Aligned_cols=320 Identities=48% Similarity=0.960 Sum_probs=299.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCChhhHHHHHHHHHHHHHHhhccccCCCCCCCCccccccCchhhh
Q 013382 98 LENRATLRAMAEFGAILFYFYICDRTNLLGDSTKNYNRDLFLFLYLLLVIVSAMTSLKKHNDKSPFSGKTIQYLNRHQTE 177 (444)
Q Consensus 98 ~~~~~~L~al~~fg~il~YfylcDRT~~F~K~~K~ys~~~F~~l~~ll~~v~~l~sl~~~~~~s~~~gk~~~~LnRdQTe 177 (444)
.+++++++|+++||+||+|||+|||||+|+||+|+||++.|+++. +++++.|++++++. |++++|||||||
T Consensus 70 ~~~~~~l~~~~~~g~il~y~y~cDRt~~f~k~~K~y~~~~F~~~~-~~~~~~g~~~~~~~--------~~~~~LnR~QTe 140 (488)
T PF07779_consen 70 DPSREVLRALAEFGLILLYFYLCDRTNFFMKENKQYSRDSFWFLS-LYIFVLGLFSLRKS--------KDTKFLNRDQTE 140 (488)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhCcccchhhccCCCHHHHHHHH-HHHHHHHHHhcccc--------CccCCcCHHHHH
Confidence 567999999999999999999999999999999999999999985 45667777777654 346799999999
Q ss_pred HhHHHHHHHHHHHHhccchh---hhHHHHHHHHHHHhhcccCceEEEEecCCCcHHHHHHHHHHHHHHHhhhhhhccCCc
Q 013382 178 EWKGWMQVLFLMYHYFAATE---IYNAIRIFIAAYVWMTGFGNFSYYYIRKDFSLPRFAQMMWRLNFFVAFCCIVLNNDY 254 (444)
Q Consensus 178 EWKGWMQ~~iLiYHy~gAS~---IYn~IRvlVAAYlFmTGYGhfsYf~~k~Dfsl~R~~qvl~RLNfLvv~Lc~vMn~~Y 254 (444)
|||||||++||+|||+|||| |||+|||+|||||||||||||+|||+|||||++|++|||||||||+++||++|||||
T Consensus 141 EWKGWMQ~~~LiYHy~~As~~~~iY~~IRv~VaaYlfmTGyGhf~yf~~~~Dfs~~R~~~vl~RLNfl~~~lc~~m~~~Y 220 (488)
T PF07779_consen 141 EWKGWMQLVFLIYHYTGASEVLPIYNAIRVLVAAYLFMTGYGHFSYFWKKGDFSLKRFAQVLFRLNFLVVLLCLVMNTPY 220 (488)
T ss_pred HHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhhhheEEEEecCCccHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 99999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEechhhHHHHHHHHHhheecccccCcc--------hHHHHHHHHHHHHHHhhhcccccchhchh--hHHHhhcccCC
Q 013382 255 MLYYICPMHTLFTIMVYGAVGIFNKYNEIG--------SVMIVKILACFLVVILIWEIPGVFDIFWS--PLTFILGYTDP 324 (444)
Q Consensus 255 ~~YYf~PLvSfWFlvVY~tlai~~~~N~~~--------~~l~~Ki~~~~~ii~il~~s~~vFe~vf~--P~~~lf~~~~~ 324 (444)
|+|||||||||||++||+||++++|+|+++ .++++|+++|+++++++|++|++||.+|+ |++++|+++|
T Consensus 221 ~~YYf~PL~SfwflvvY~tl~i~~~~n~~~~~~~~~~~~~~~~Ki~~~~~~v~~l~~~~~~fe~if~~~p~~~lf~~~~- 299 (488)
T PF07779_consen 221 MFYYFVPLHSFWFLVVYATLAIGPRINSNSADGNPFWYLVLLLKIVACFLIVTVLWESPGVFERIFSPRPLKALFGIDW- 299 (488)
T ss_pred eEEEEcHHHHHHHHHHHHHHHHhHHhhcCCccccchhHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHhcCCC-
Confidence 999999999999999999999999999999 79999999999999999999999999987 6999999854
Q ss_pred CCCCCCCcceeeEeecCchHHHHHHHHHHHHhhhHHHHH---HhhhcccchhhhHHHHHHHHHHHHHHHhhhheeeecCc
Q 013382 325 AKPDLPRLHEWHFRSGLDRYIWIIGMIYAYYHPTAEKWM---EKLEESEPKRKLSIKAGIVTVALFVGYLWYECIYKLDK 401 (444)
Q Consensus 325 ~~~~~~~l~EW~FR~~LDryiv~~GMl~A~~~~~~~~~~---~~l~~~~~~~r~~~k~~i~sv~~~~~y~w~~~~~~~~K 401 (444)
++||||||++||||||++||++|++|+++|++. ++.++...++|++.+++++|++++++|.|++..|+ ||
T Consensus 300 ------~~~EW~fR~~LDryiv~~GMl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~~~y~~~~~~~~-~K 372 (488)
T PF07779_consen 300 ------DLHEWWFRSGLDRYIVIVGMLFAYAYPRVQRYSVIDDRSEENLFSRRVSIIAILASILSLVGYWWFAFSCK-DK 372 (488)
T ss_pred ------cHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CH
Confidence 899999999999999999999999999999985 34455567788888989999999999999987775 99
Q ss_pred hhhccccCccchHHHHHHHHHhhhhhhhhcccc
Q 013382 402 VTYNKYHPYTSWIPITYVLFIFYFFSLVKHLSG 434 (444)
Q Consensus 402 ~~YN~~HPYiS~IPIl~fI~lrn~~~~~r~~~~ 434 (444)
.+||++|||+|||||++||++||.++.+|+..-
T Consensus 373 ~~Yn~~HPY~S~IPIl~fI~LRN~t~~lRs~~s 405 (488)
T PF07779_consen 373 FEYNEYHPYTSWIPILAFIILRNITPYLRSRYS 405 (488)
T ss_pred HHHhccCchHhHHHHHHHHHHHcCChHHHHHHH
Confidence 999999999999999999999999999998753
No 3
>PF11877 DUF3397: Protein of unknown function (DUF3397); InterPro: IPR024515 This family of bacterial proteins is currently functionally uncharacterised.
Probab=77.08 E-value=2.1 Score=37.70 Aligned_cols=28 Identities=25% Similarity=0.642 Sum_probs=25.1
Q ss_pred EecCCCcHHHHHHHHHHHHHHHhhhhhh
Q 013382 222 YIRKDFSLPRFAQMMWRLNFFVAFCCIV 249 (444)
Q Consensus 222 ~~k~Dfsl~R~~qvl~RLNfLvv~Lc~v 249 (444)
.+++|++.+|+.++.||++++....+|+
T Consensus 80 ~~~~~i~~~k~~k~~WR~~Fll~~~~Yi 107 (116)
T PF11877_consen 80 RKKGEISYKKFFKKFWRLGFLLTFFLYI 107 (116)
T ss_pred HHcCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999998888764
No 4
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=46.90 E-value=1e+02 Score=33.24 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=23.9
Q ss_pred HHHHHHHHhheecccccCc----chHHHHHHHHHHHHHHhhhcccc
Q 013382 265 LFTIMVYGAVGIFNKYNEI----GSVMIVKILACFLVVILIWEIPG 306 (444)
Q Consensus 265 fWFlvVY~tlai~~~~N~~----~~~l~~Ki~~~~~ii~il~~s~~ 306 (444)
|++++.-++.++.++.... +.+-..|+++.+++++.-+-+|.
T Consensus 86 Ff~l~~l~~i~v~~~~d~Ra~ihng~W~~K~l~l~~l~v~~FfiP~ 131 (429)
T PF03348_consen 86 FFFLMALLTIGVKSSRDPRAAIHNGFWFLKFLLLIGLIVGAFFIPN 131 (429)
T ss_pred HHHHHHHHHhhcCCCccHHHHHHHhhHHHHHHHHHHHHheeEEeCc
Confidence 5555555555565433222 12457799988777765554554
No 5
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=32.91 E-value=4.3e+02 Score=28.86 Aligned_cols=45 Identities=13% Similarity=0.285 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHhheecccccCc----chHHHHHHHHHHHHHHhhhcccc
Q 013382 262 MHTLFTIMVYGAVGIFNKYNEI----GSVMIVKILACFLVVILIWEIPG 306 (444)
Q Consensus 262 LvSfWFlvVY~tlai~~~~N~~----~~~l~~Ki~~~~~ii~il~~s~~ 306 (444)
+..|++++.-...++.++.... +.+=..|+++.+.++..-+.+|.
T Consensus 85 ~a~Ff~~lsllm~gVkss~D~R~~iqng~W~fK~i~~~~l~i~~FfIP~ 133 (426)
T KOG2592|consen 85 LACFFLLLSLLMIGVKSSKDPRAAIQNGFWFFKFILWFGLIVGSFFIPN 133 (426)
T ss_pred HHHHHHHHHHHHHhcCcCCCHHHHHHcCcHHHHHHHHHHHHHheEEcCC
Confidence 3456666665555664443221 12345599998888876666664
No 6
>KOG1699 consensus O-acetyltransferase [General function prediction only]
Probab=31.15 E-value=44 Score=35.72 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHhhhcccccchhchh-hHHHhhcccCCCCCCCCCcceeeEeecCchHHHHHHHHHHHHhhhHHHHHH
Q 013382 286 VMIVKILACFLVVILIWEIPGVFDIFWS-PLTFILGYTDPAKPDLPRLHEWHFRSGLDRYIWIIGMIYAYYHPTAEKWME 364 (444)
Q Consensus 286 ~l~~Ki~~~~~ii~il~~s~~vFe~vf~-P~~~lf~~~~~~~~~~~~l~EW~FR~~LDryiv~~GMl~A~~~~~~~~~~~ 364 (444)
+++.|.+-+...++.++.+|..|+..+. |++.+|..+-.. |-.|.+...-+-.| =.|+.+++++=-+ +.-.|
T Consensus 301 ~Lv~~~~~~i~g~f~~f~s~~~f~~~~~~P~k~~f~~~hEW-wfr~~LDRYi~~~G-MiyA~~~~~vek~-----~~~~e 373 (442)
T KOG1699|consen 301 FLVVICLWEIPGVFEIFWSPLFFLLGYNDPAKPLFPLLHEW-WFRWGLDRYIWIIG-MIYAYYHPTVEKW-----MEKLE 373 (442)
T ss_pred HHHHHHHHHhhhHHHhhhhhHHHHHhcCCccchhhhhHHHH-HHHhccchhhhHHH-HHHHHHHHHHHHH-----HHHhh
Confidence 3444555566677778888888886543 999887644210 10012221111122 2456666554333 34478
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHHHhhhheeeecC---chhhccccCccchH
Q 013382 365 KLEESEPKRKLSIKAGIVTVALFVGYLWYECIYKLD---KVTYNKYHPYTSWI 414 (444)
Q Consensus 365 ~l~~~~~~~r~~~k~~i~sv~~~~~y~w~~~~~~~~---K~~YN~~HPYiS~I 414 (444)
+.|++.++++.+.-.+++++++.+.|+....-.+.+ -..|..+=|-++.+
T Consensus 374 ~~~~~~~~~~~s~~v~i~s~vg~~~y~~~~~~n~~~~ne~Hpy~s~IpI~~~~ 426 (442)
T KOG1699|consen 374 ECEGKLFSSIKSSIVTILSLVGYGWYWSIYCMNKQNCNEYHPYTSWIPITGYV 426 (442)
T ss_pred cCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcceEeeeehhe
Confidence 999999999999899999999999998877543333 34455666665543
No 7
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=23.86 E-value=5.7e+02 Score=23.46 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=42.2
Q ss_pred hhhhHhHHHHHHHHHHHHhccchh--------hh-------HHHHHHHHHHHhhcccCce---EEEEecCCCcHHHHHHH
Q 013382 174 HQTEEWKGWMQVLFLMYHYFAATE--------IY-------NAIRIFIAAYVWMTGFGNF---SYYYIRKDFSLPRFAQM 235 (444)
Q Consensus 174 dQTeEWKGWMQ~~iLiYHy~gAS~--------IY-------n~IRvlVAAYlFmTGYGhf---sYf~~k~Dfsl~R~~qv 235 (444)
+..|=-||..=+.++++|...... .. ..-+..|..+.+++||.=. .---..++|-.+|+.+.
T Consensus 2 ~~iD~lR~ia~l~Vv~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ff~iSG~~~~~~~~~~~~~~~~~~~R~~rl 81 (340)
T PF01757_consen 2 YWIDGLRGIAILLVVFGHSFIFYFPPPFQGWPIFDSFSIFLFIGRFAVPLFFFISGYLLARSSKSRKSWKKFLKKRFLRL 81 (340)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcccccccchhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHH
Confidence 456778888889999999877642 11 4568889999999998765 11111233446676666
Q ss_pred H
Q 013382 236 M 236 (444)
Q Consensus 236 l 236 (444)
+
T Consensus 82 ~ 82 (340)
T PF01757_consen 82 L 82 (340)
T ss_pred h
Confidence 5
No 8
>PF07263 DMP1: Dentin matrix protein 1 (DMP1); InterPro: IPR009889 This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21 []. DMP1 is a bone and teeth specific protein initially identified from mineralised dentin. DMP1 is primarily localised in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca2+ surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralised matrix formation extracellularly, at later stages of osteoblast maturation []. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown [].; GO: 0001503 ossification, 0030198 extracellular matrix organization
Probab=22.72 E-value=36 Score=37.38 Aligned_cols=11 Identities=45% Similarity=1.063 Sum_probs=8.9
Q ss_pred hhhhHhHHHHH
Q 013382 174 HQTEEWKGWMQ 184 (444)
Q Consensus 174 dQTeEWKGWMQ 184 (444)
+-.|||||||+
T Consensus 28 ~sseew~g~l~ 38 (514)
T PF07263_consen 28 ESSEEWKGHLA 38 (514)
T ss_pred cchHhhhcccc
Confidence 44789999986
No 9
>PF12459 DUF3687: D-Ala-teichoic acid biosynthesis protein; InterPro: IPR021008 Proteins in this family are bacterial proteins of approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important. A number of entries are annotated as D-Ala-teichoic acid biosynthesis protein; however there is no direct evidence to support this annotation.
Probab=19.74 E-value=56 Score=24.73 Aligned_cols=16 Identities=38% Similarity=0.733 Sum_probs=11.5
Q ss_pred HHHHHHHhccchh---hhH
Q 013382 185 VLFLMYHYFAATE---IYN 200 (444)
Q Consensus 185 ~~iLiYHy~gAS~---IYn 200 (444)
+++.+|+|.|.++ |||
T Consensus 23 ~L~ylYgy~g~~~~~FIYN 41 (42)
T PF12459_consen 23 ALIYLYGYSGIGQGPFIYN 41 (42)
T ss_pred HHHHHHhcCCCCCCCeecC
Confidence 4567788887775 777
No 10
>PF10065 DUF2303: Uncharacterized conserved protein (DUF2303); InterPro: IPR019276 This entry is represented by Bacteriiophage VT2phi_272, P20. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=14.10 E-value=1.1e+02 Score=31.02 Aligned_cols=29 Identities=31% Similarity=0.677 Sum_probs=23.3
Q ss_pred cCCCCCCCCccccccCchhhhHhHHHHHH
Q 013382 157 HNDKSPFSGKTIQYLNRHQTEEWKGWMQV 185 (444)
Q Consensus 157 ~~~~s~~~gk~~~~LnRdQTeEWKGWMQ~ 185 (444)
++...|..++..-.|+=..|+|||-|.+.
T Consensus 99 ~~~~~pg~~dh~A~l~l~~T~e~k~w~~~ 127 (276)
T PF10065_consen 99 HTADAPGHGDHRATLTLPKTAEWKAWLAI 127 (276)
T ss_pred CCCCCCCccceeEEEeCCCCHHHHHHHHh
Confidence 44445777788888999999999999984
Done!