Query 013382
Match_columns 444
No_of_seqs 120 out of 133
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 09:32:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2krx_A ASL3597 protein; struct 12.2 92 0.0031 26.1 1.8 22 164-185 17-39 (94)
2 2h88_D Succinate dehydrogenase 12.1 51 0.0017 27.6 0.2 27 211-239 77-103 (103)
3 2i7u_A Four-alpha-helix bundle 8.5 1.1E+02 0.0038 23.2 0.9 16 58-73 19-34 (62)
4 3zwl_E Eukaryotic translation 8.3 1.2E+02 0.004 22.7 0.9 16 170-185 15-30 (50)
5 1rkl_A Dolichyl-diphosphooligo 8.2 1.6E+02 0.0053 20.7 1.5 14 183-196 18-31 (36)
6 2lat_A Dolichyl-diphosphooligo 7.8 1.5E+02 0.005 21.0 1.2 14 183-196 18-31 (37)
7 1pi7_A VPU protein, U ORF prot 5.6 4.3E+02 0.015 18.4 2.7 25 10-35 7-31 (36)
8 3sok_A Fimbrial protein; pilus 5.4 4.1E+02 0.014 22.7 3.1 23 345-367 10-32 (151)
9 1p22_C Beta-catenin, Pro2286; 5.4 1.3E+02 0.0046 19.7 -0.0 7 174-180 2-8 (26)
10 1oqw_A Fimbrial protein; type 5.2 4.4E+02 0.015 22.1 3.1 22 345-366 10-31 (144)
No 1
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}
Probab=12.19 E-value=92 Score=26.13 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=17.9
Q ss_pred CCccccccCchhhhHh-HHHHHH
Q 013382 164 SGKTIQYLNRHQTEEW-KGWMQV 185 (444)
Q Consensus 164 ~gk~~~~LnRdQTeEW-KGWMQ~ 185 (444)
+|++..||+.+++.|| |+|.|-
T Consensus 17 p~~~EqfLT~~Ell~~Lk~~L~~ 39 (94)
T 2krx_A 17 TNQPEQFLTTIELLEKLKGELEK 39 (94)
T ss_dssp SSSCSEEECHHHHHHHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHHHHh
Confidence 3567789999999998 888774
No 2
>2h88_D Succinate dehydrogenase cytochrome B, small subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 2wqy_D* 1zoy_D* 1zp0_D* 3abv_D* 3ae1_D* 3ae2_D* 3ae3_D* 3ae4_D* 3ae5_D* 3ae6_D* 3ae7_D* 3ae8_D* 3ae9_D* 3aea_D* 3aeb_D* 3aec_D* ...
Probab=12.09 E-value=51 Score=27.57 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=22.4
Q ss_pred hhcccCceEEEEecCCCcHHHHHHHHHHH
Q 013382 211 WMTGFGNFSYYYIRKDFSLPRFAQMMWRL 239 (444)
Q Consensus 211 FmTGYGhfsYf~~k~Dfsl~R~~qvl~RL 239 (444)
..|++| .|++.++|=|+.+..+.+|+|
T Consensus 77 ~~t~~G--l~~~~~~d~Gi~~~ik~lW~l 103 (103)
T 2h88_D 77 AITFTG--LCYFNYYDVGICKAVAMLWSI 103 (103)
T ss_dssp HHHHHH--HHHHHHHSSCHHHHHHHHHTC
T ss_pred HHHHHH--HheeeecCCcHHHHHHHHhcC
Confidence 356666 677899999999999999975
No 3
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=8.48 E-value=1.1e+02 Score=23.18 Aligned_cols=16 Identities=38% Similarity=0.547 Sum_probs=11.8
Q ss_pred ccchhhhhcCCCCccc
Q 013382 58 EDDRAVLLEGGLSRSA 73 (444)
Q Consensus 58 ~~~~~~l~~~g~~~~~ 73 (444)
.+|.+.|+|||+...+
T Consensus 19 aeeaaklleggggggg 34 (62)
T 2i7u_A 19 AEEAAKLLEGGGGGGG 34 (62)
T ss_dssp HHHHHHHHHCSSCSSS
T ss_pred HHHHHHHHhcCCCCch
Confidence 3789999998765443
No 4
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=8.27 E-value=1.2e+02 Score=22.66 Aligned_cols=16 Identities=13% Similarity=0.414 Sum_probs=12.5
Q ss_pred ccCchhhhHhHHHHHH
Q 013382 170 YLNRHQTEEWKGWMQV 185 (444)
Q Consensus 170 ~LnRdQTeEWKGWMQ~ 185 (444)
..=|.+.+||+-|-+-
T Consensus 15 e~RRrlLeEW~awRa~ 30 (50)
T 3zwl_E 15 LHQRELLKQWTEYREK 30 (50)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3447899999999764
No 5
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=8.18 E-value=1.6e+02 Score=20.73 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=10.0
Q ss_pred HHHHHHHHHhccch
Q 013382 183 MQVLFLMYHYFAAT 196 (444)
Q Consensus 183 MQ~~iLiYHy~gAS 196 (444)
|-+++.+|||.++.
T Consensus 18 ~~~LIvlYH~v~~n 31 (36)
T 1rkl_A 18 MMTLIVIYHAVDST 31 (36)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcc
Confidence 34678899997653
No 6
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=7.80 E-value=1.5e+02 Score=20.97 Aligned_cols=14 Identities=36% Similarity=0.842 Sum_probs=10.0
Q ss_pred HHHHHHHHHhccch
Q 013382 183 MQVLFLMYHYFAAT 196 (444)
Q Consensus 183 MQ~~iLiYHy~gAS 196 (444)
|=+++.+|||.++.
T Consensus 18 ~~~LIVlYH~v~~n 31 (37)
T 2lat_A 18 LFLLVVLYHYVAVN 31 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC
Confidence 34678899997653
No 7
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=5.63 E-value=4.3e+02 Score=18.37 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=16.8
Q ss_pred cchhhhhhHHHHHHHHHHHHHHhhhc
Q 013382 10 GQVSFLLGIIPVFVAWIYSEFLEYKK 35 (444)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (444)
+-+++..+++-.++.|... +.||||
T Consensus 7 ~ivalivalIiaIVVWtiv-~ieYrk 31 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWSIV-IIEGRG 31 (36)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5566777788888889843 445554
No 8
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=5.41 E-value=4.1e+02 Score=22.66 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhh
Q 013382 345 IWIIGMIYAYYHPTAEKWMEKLE 367 (444)
Q Consensus 345 iv~~GMl~A~~~~~~~~~~~~l~ 367 (444)
++++|++.|++.|.++++.++.+
T Consensus 10 iaIigiLaaia~p~~~~~~~~~~ 32 (151)
T 3sok_A 10 VAIIGILAAFAIPAYNDYIARSQ 32 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999988766443
No 9
>1p22_C Beta-catenin, Pro2286; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} PDB: 2g57_A*
Probab=5.41 E-value=1.3e+02 Score=19.75 Aligned_cols=7 Identities=14% Similarity=0.729 Sum_probs=5.3
Q ss_pred hhhhHhH
Q 013382 174 HQTEEWK 180 (444)
Q Consensus 174 dQTeEWK 180 (444)
+||.||.
T Consensus 2 ~qt~~Wq 8 (26)
T 1p22_C 2 AAVSHWQ 8 (26)
T ss_pred chhhhhh
Confidence 6888884
No 10
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=5.15 E-value=4.4e+02 Score=22.05 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHhh
Q 013382 345 IWIIGMIYAYYHPTAEKWMEKL 366 (444)
Q Consensus 345 iv~~GMl~A~~~~~~~~~~~~l 366 (444)
++++|++.|++.|.++++.++.
T Consensus 10 i~Ii~il~~ia~p~~~~~~~~~ 31 (144)
T 1oqw_A 10 VAIIGILAAIAIPQYQNYVARS 31 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999998876544
Done!