Query 013382
Match_columns 444
No_of_seqs 120 out of 133
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 09:32:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013382.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013382hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pila_ d.24.1.1 (A:) Pilin Gc 15.5 43 0.0031 25.1 2.8 23 345-367 10-32 (158)
2 d1v54m_ f.23.7.1 (M:) Mitochon 8.8 1E+02 0.0075 20.7 2.5 32 5-36 8-43 (43)
3 d1jb0m_ f.23.19.1 (M:) Subunit 5.5 2.2E+02 0.016 17.6 2.7 25 7-31 3-29 (31)
4 d1otsa_ f.20.1.1 (A:) Clc chlo 5.4 7.1E+02 0.052 22.3 7.8 29 345-373 239-274 (444)
5 d1kqfb2 f.23.22.1 (B:246-290) 5.2 1.1E+02 0.008 20.8 1.1 18 177-194 6-33 (45)
6 d2fqma1 d.378.1.1 (A:107-171) 5.1 97 0.0071 22.4 0.8 18 170-187 23-40 (65)
7 d2ffea1 c.143.1.1 (A:1-309) LP 3.1 1.9E+02 0.013 25.9 1.2 20 399-418 184-203 (309)
8 d2f1la2 b.43.3.4 (A:7-95) 16S 2.9 1.4E+02 0.01 21.2 0.1 14 169-182 65-78 (89)
9 d1jb0x_ f.23.20.1 (X:) Subunit 2.6 3.6E+02 0.026 16.2 1.7 12 201-212 15-26 (29)
10 d2hzba1 c.143.1.1 (A:2-312) Hy 2.6 2.1E+02 0.015 25.5 0.8 29 400-431 178-206 (311)
No 1
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=15.45 E-value=43 Score=25.11 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhh
Q 013382 345 IWIIGMIYAYYHPTAEKWMEKLE 367 (444)
Q Consensus 345 iv~~GMl~A~~~~~~~~~~~~l~ 367 (444)
++++|+|.|++.|.++++.++-+
T Consensus 10 iaIIgILaaia~P~~~~~~~~a~ 32 (158)
T d2pila_ 10 IAIVGILAAVALPAYQDYTARAQ 32 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999998866443
No 2
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.80 E-value=1e+02 Score=20.75 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=22.4
Q ss_pred CCCCccchhhhhhHHH----HHHHHHHHHHHhhhcc
Q 013382 5 RPITPGQVSFLLGIIP----VFVAWIYSEFLEYKKV 36 (444)
Q Consensus 5 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 36 (444)
.|++++.++.-|+++- +-.+||.|..=+|||+
T Consensus 8 ~~ls~~E~aigLt~~f~~~L~PaGwVLshLe~YKk~ 43 (43)
T d1v54m_ 8 TPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS 43 (43)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHhccC
Confidence 5788887765544332 2368999998889985
No 3
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=5.50 E-value=2.2e+02 Score=17.59 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=18.1
Q ss_pred CCccc--hhhhhhHHHHHHHHHHHHHH
Q 013382 7 ITPGQ--VSFLLGIIPVFVAWIYSEFL 31 (444)
Q Consensus 7 ~~~~~--~~~~~~~~~~~~~~~~~~~~ 31 (444)
++.-| ++..++++|-++||-.+.=|
T Consensus 3 lsdtqv~valvial~pg~lafrlatel 29 (31)
T d1jb0m_ 3 LTDTQVYVALVIALLPAVLAFRLSTEL 29 (31)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444 46778999999999877543
No 4
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=5.44 E-value=7.1e+02 Score=22.32 Aligned_cols=29 Identities=10% Similarity=0.377 Sum_probs=13.8
Q ss_pred HHHHHHHHHHH-------hhhHHHHHHhhhcccchh
Q 013382 345 IWIIGMIYAYY-------HPTAEKWMEKLEESEPKR 373 (444)
Q Consensus 345 iv~~GMl~A~~-------~~~~~~~~~~l~~~~~~~ 373 (444)
....|++++.. ....++|.++.......+
T Consensus 239 ~~~lgi~~g~~g~~f~~~~~~~~~~~~~~~~~~~~~ 274 (444)
T d1otsa_ 239 YLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITK 274 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Confidence 35566666543 223345555544443333
No 5
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=5.18 E-value=1.1e+02 Score=20.75 Aligned_cols=18 Identities=33% Similarity=0.791 Sum_probs=11.8
Q ss_pred hHhHHHHH----------HHHHHHHhcc
Q 013382 177 EEWKGWMQ----------VLFLMYHYFA 194 (444)
Q Consensus 177 eEWKGWMQ----------~~iLiYHy~g 194 (444)
.=||||+- ++-.++||.+
T Consensus 6 ~lWKgv~Kpl~~~~~~~~~~~~~fHYv~ 33 (45)
T d1kqfb2 6 SLWKGALKPLAAAGFIATFAGLIFHYIG 33 (45)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhhe
Confidence 45999876 3335677754
No 6
>d2fqma1 d.378.1.1 (A:107-171) Phosphoprotein P (M1) {Vesicular stomatitis indiana virus [TaxId: 11277]}
Probab=5.10 E-value=97 Score=22.41 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=13.5
Q ss_pred ccCchhhhHhHHHHHHHH
Q 013382 170 YLNRHQTEEWKGWMQVLF 187 (444)
Q Consensus 170 ~LnRdQTeEWKGWMQ~~i 187 (444)
=|..+||+.|+-=.-.+.
T Consensus 23 gLt~~Q~~QW~~TIeav~ 40 (65)
T d2fqma1 23 GLSGEQKSQWMLTIKAVV 40 (65)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHH
Confidence 389999999986555443
No 7
>d2ffea1 c.143.1.1 (A:1-309) LPPG:FO 2-phospho-L-lactate transferase CofD {Methanosarcina mazei [TaxId: 2209]}
Probab=3.07 E-value=1.9e+02 Score=25.89 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=16.6
Q ss_pred cCchhhccccCccchHHHHH
Q 013382 399 LDKVTYNKYHPYTSWIPITY 418 (444)
Q Consensus 399 ~~K~~YN~~HPYiS~IPIl~ 418 (444)
.|-..|-.=+||+|.+|++.
T Consensus 184 AD~Iv~gPGs~ytSI~P~Ll 203 (309)
T d2ffea1 184 EENILIGPSNPITSIGPIIS 203 (309)
T ss_dssp CCEEEECSSCTTTTHHHHHH
T ss_pred CCcEEEcCCcchhhhccccc
Confidence 36677778899999999984
No 8
>d2f1la2 b.43.3.4 (A:7-95) 16S rRNA processing protein RimM, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.95 E-value=1.4e+02 Score=21.17 Aligned_cols=14 Identities=14% Similarity=0.461 Sum_probs=10.8
Q ss_pred cccCchhhhHhHHH
Q 013382 169 QYLNRHQTEEWKGW 182 (444)
Q Consensus 169 ~~LnRdQTeEWKGW 182 (444)
++=+|||.|+++|.
T Consensus 65 ~i~~r~~Ae~l~g~ 78 (89)
T d2f1la2 65 GLDDREEARTFTGY 78 (89)
T ss_dssp TCCSHHHHHTTTTC
T ss_pred CCCCHHHHHHhCCC
Confidence 46688888888873
No 9
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=2.63 E-value=3.6e+02 Score=16.24 Aligned_cols=12 Identities=42% Similarity=0.755 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhh
Q 013382 201 AIRIFIAAYVWM 212 (444)
Q Consensus 201 ~IRvlVAAYlFm 212 (444)
+|-.+||||-|-
T Consensus 15 ainflvaayyfa 26 (29)
T d1jb0x_ 15 AINFLVAAYYFA 26 (29)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 778899999774
No 10
>d2hzba1 c.143.1.1 (A:2-312) Hypothetical protein BH3568 {Bacillus halodurans [TaxId: 86665]}
Probab=2.59 E-value=2.1e+02 Score=25.55 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=19.9
Q ss_pred CchhhccccCccchHHHHHHHHHhhhhhhhhc
Q 013382 400 DKVTYNKYHPYTSWIPITYVLFIFYFFSLVKH 431 (444)
Q Consensus 400 ~K~~YN~~HPYiS~IPIl~fI~lrn~~~~~r~ 431 (444)
|-..+-.-+||+|++|++. ++.+..-+|+
T Consensus 178 D~IiigPgs~~tSI~P~L~---v~gi~~AI~~ 206 (311)
T d2hzba1 178 DVIVIGPGSLYTSVLPNLL---VPGICEAIKQ 206 (311)
T ss_dssp SEEEECSSCCCCCCHHHHT---STTHHHHHHH
T ss_pred CcEEEcCCcHHHHhhhhee---cHHHHHHHhc
Confidence 6666778899999999983 3444444443
Done!