Query 013383
Match_columns 444
No_of_seqs 271 out of 1786
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:18:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2515 Acd 1-aminocyclopropan 100.0 2E-55 4.2E-60 423.8 28.4 317 64-444 4-323 (323)
2 PRK03910 D-cysteine desulfhydr 100.0 2.1E-54 4.6E-59 436.8 34.1 318 65-444 5-329 (331)
3 TIGR01274 ACC_deam 1-aminocycl 100.0 7.2E-53 1.6E-57 426.6 33.3 317 65-442 4-332 (337)
4 PRK12390 1-aminocyclopropane-1 100.0 5.6E-53 1.2E-57 427.4 32.5 319 65-443 5-334 (337)
5 TIGR01275 ACC_deam_rel pyridox 100.0 1.1E-52 2.4E-57 420.6 33.8 306 77-443 4-310 (311)
6 PRK14045 1-aminocyclopropane-1 100.0 6.8E-51 1.5E-55 410.8 33.8 312 65-443 11-324 (329)
7 cd06449 ACCD Aminocyclopropane 100.0 6.2E-50 1.3E-54 400.2 32.9 298 81-433 1-307 (307)
8 PRK04346 tryptophan synthase s 100.0 1.4E-46 3.1E-51 385.6 22.4 345 37-442 12-391 (397)
9 PRK13028 tryptophan synthase s 100.0 2.8E-45 6E-50 376.6 25.3 343 35-441 14-394 (402)
10 PRK07591 threonine synthase; V 100.0 4.7E-45 1E-49 379.3 25.4 299 68-440 82-397 (421)
11 PRK06381 threonine synthase; V 100.0 1.8E-44 4E-49 362.5 27.7 289 79-435 14-319 (319)
12 PRK07048 serine/threonine dehy 100.0 6.9E-45 1.5E-49 366.0 22.2 291 79-442 23-317 (321)
13 COG1171 IlvA Threonine dehydra 100.0 4.3E-45 9.3E-50 363.5 20.4 288 79-441 24-321 (347)
14 cd06448 L-Ser-dehyd Serine deh 100.0 1.3E-44 2.8E-49 363.2 23.9 292 80-441 1-310 (316)
15 PLN02550 threonine dehydratase 100.0 1.1E-44 2.4E-49 385.1 24.5 292 78-440 107-403 (591)
16 PRK06110 hypothetical protein; 100.0 1E-44 2.2E-49 365.0 22.9 290 79-442 20-314 (322)
17 PRK08526 threonine dehydratase 100.0 8.2E-45 1.8E-49 375.0 22.6 286 79-440 19-312 (403)
18 PRK07476 eutB threonine dehydr 100.0 9.1E-45 2E-49 365.3 21.5 287 79-441 18-313 (322)
19 PRK12483 threonine dehydratase 100.0 2.3E-44 4.9E-49 380.4 24.3 288 79-440 36-331 (521)
20 TIGR01124 ilvA_2Cterm threonin 100.0 4.3E-44 9.4E-49 378.1 24.0 288 79-440 16-311 (499)
21 COG0133 TrpB Tryptophan syntha 100.0 6.6E-45 1.4E-49 351.3 15.6 341 38-442 11-388 (396)
22 PLN02618 tryptophan synthase, 100.0 1E-43 2.3E-48 365.2 24.7 346 37-441 20-403 (410)
23 PRK08197 threonine synthase; V 100.0 1.5E-43 3.2E-48 365.6 25.5 294 68-436 72-382 (394)
24 PRK06352 threonine synthase; V 100.0 5.5E-44 1.2E-48 363.4 21.8 295 67-439 20-323 (351)
25 cd01562 Thr-dehyd Threonine de 100.0 9.4E-44 2E-48 354.5 21.4 285 79-436 16-304 (304)
26 PRK09224 threonine dehydratase 100.0 1.6E-43 3.5E-48 374.9 24.3 288 79-440 19-314 (504)
27 PRK06382 threonine dehydratase 100.0 1.2E-43 2.5E-48 367.6 22.7 288 79-439 24-315 (406)
28 PRK06815 hypothetical protein; 100.0 2.1E-43 4.6E-48 354.6 23.7 287 79-441 19-313 (317)
29 PRK08329 threonine synthase; V 100.0 1.6E-43 3.4E-48 359.6 22.5 279 69-435 58-344 (347)
30 PLN02970 serine racemase 100.0 1.8E-43 3.9E-48 356.7 22.5 291 79-441 26-323 (328)
31 TIGR02991 ectoine_eutB ectoine 100.0 5.5E-43 1.2E-47 351.5 25.9 287 79-441 18-312 (317)
32 cd01561 CBS_like CBS_like: Thi 100.0 4.2E-43 9.1E-48 348.3 24.1 280 79-434 1-286 (291)
33 TIGR02079 THD1 threonine dehyd 100.0 3.1E-43 6.8E-48 364.4 23.2 287 79-440 15-311 (409)
34 PRK10717 cysteine synthase A; 100.0 4.9E-43 1.1E-47 353.8 24.0 287 79-434 12-308 (330)
35 TIGR00263 trpB tryptophan synt 100.0 8.4E-43 1.8E-47 358.6 26.0 339 41-443 8-384 (385)
36 PRK08198 threonine dehydratase 100.0 3E-43 6.5E-48 364.5 22.5 285 79-440 21-313 (404)
37 cd01563 Thr-synth_1 Threonine 100.0 3.1E-43 6.7E-48 354.2 21.6 295 67-433 14-320 (324)
38 TIGR01136 cysKM cysteine synth 100.0 7.3E-43 1.6E-47 348.0 23.3 278 79-434 6-290 (299)
39 PRK08639 threonine dehydratase 100.0 3.4E-43 7.3E-48 365.6 21.5 287 79-440 24-322 (420)
40 PRK06260 threonine synthase; V 100.0 7.3E-43 1.6E-47 360.7 23.6 308 55-435 46-368 (397)
41 TIGR01127 ilvA_1Cterm threonin 100.0 5E-43 1.1E-47 360.1 21.8 281 81-438 1-289 (380)
42 PRK06721 threonine synthase; R 100.0 1.5E-42 3.2E-47 353.1 23.9 282 79-435 27-318 (352)
43 PRK06608 threonine dehydratase 100.0 2.3E-42 5E-47 349.6 25.1 283 79-439 22-314 (338)
44 TIGR01139 cysK cysteine syntha 100.0 8E-42 1.7E-46 340.3 27.2 278 79-434 6-289 (298)
45 PRK13803 bifunctional phosphor 100.0 1.9E-42 4.1E-47 373.8 24.4 347 33-441 221-602 (610)
46 PRK08638 threonine dehydratase 100.0 1.9E-42 4.1E-47 349.6 22.8 292 79-441 26-321 (333)
47 PRK07409 threonine synthase; V 100.0 1.6E-42 3.6E-47 353.0 21.9 295 68-440 24-328 (353)
48 PRK05638 threonine synthase; V 100.0 8.3E-42 1.8E-46 357.4 25.6 302 55-435 45-356 (442)
49 PRK13802 bifunctional indole-3 100.0 2E-41 4.4E-46 365.9 28.9 347 37-442 280-671 (695)
50 cd06446 Trp-synth_B Tryptophan 100.0 2.6E-41 5.6E-46 345.6 25.8 302 77-437 31-362 (365)
51 PRK07334 threonine dehydratase 100.0 1.2E-41 2.7E-46 352.3 23.3 285 79-440 22-312 (403)
52 PLN00011 cysteine synthase 100.0 1.3E-41 2.8E-46 342.5 22.6 281 79-436 16-304 (323)
53 PRK08246 threonine dehydratase 100.0 2.6E-41 5.5E-46 338.5 24.3 285 79-439 22-308 (310)
54 KOG1251 Serine racemase [Signa 100.0 7.8E-42 1.7E-46 319.4 18.3 286 79-441 24-317 (323)
55 PRK06450 threonine synthase; V 100.0 5.1E-41 1.1E-45 339.6 24.6 275 68-434 51-334 (338)
56 PRK08813 threonine dehydratase 100.0 6.3E-41 1.4E-45 338.9 24.8 272 79-441 38-316 (349)
57 PRK11761 cysM cysteine synthas 100.0 1.4E-40 3E-45 331.1 26.8 268 79-434 11-285 (296)
58 TIGR01137 cysta_beta cystathio 100.0 6E-41 1.3E-45 352.0 23.4 284 79-434 10-302 (454)
59 TIGR01138 cysM cysteine syntha 100.0 2.1E-40 4.5E-45 329.0 25.3 268 79-434 7-281 (290)
60 PLN02556 cysteine synthase/L-3 100.0 3.4E-40 7.4E-45 336.8 27.3 279 79-434 58-343 (368)
61 PRK08206 diaminopropionate amm 100.0 1.2E-40 2.6E-45 344.0 23.5 298 79-440 43-389 (399)
62 PLN02356 phosphateglycerate ki 100.0 2.9E-40 6.3E-45 339.9 24.8 304 79-433 52-392 (423)
63 PLN02569 threonine synthase 100.0 3.1E-40 6.7E-45 346.8 25.6 284 79-434 132-438 (484)
64 PRK02991 D-serine dehydratase; 100.0 4E-40 8.7E-45 342.4 25.9 296 79-435 74-424 (441)
65 cd00640 Trp-synth-beta_II Tryp 100.0 1.5E-39 3.2E-44 314.6 27.4 240 81-433 1-244 (244)
66 TIGR01415 trpB_rel pyridoxal-p 100.0 5.5E-40 1.2E-44 339.9 26.0 325 77-441 65-413 (419)
67 TIGR00260 thrC threonine synth 100.0 1.4E-40 3E-45 335.6 20.4 291 77-434 20-323 (328)
68 PLN02565 cysteine synthase 100.0 7.4E-40 1.6E-44 329.3 24.7 278 79-434 14-299 (322)
69 COG0031 CysK Cysteine synthase 100.0 7.3E-40 1.6E-44 320.8 23.3 276 79-432 10-292 (300)
70 PLN03013 cysteine synthase 100.0 1.1E-39 2.4E-44 335.8 25.7 278 79-434 122-409 (429)
71 PF00291 PALP: Pyridoxal-phosp 100.0 6E-40 1.3E-44 326.2 22.8 288 79-432 6-306 (306)
72 cd06447 D-Ser-dehyd D-Serine d 100.0 1.2E-39 2.6E-44 335.2 25.3 295 79-434 51-400 (404)
73 TIGR01747 diampropi_NH3ly diam 100.0 1.5E-39 3.3E-44 332.9 25.8 299 79-441 21-371 (376)
74 PRK12391 tryptophan synthase s 100.0 2.3E-39 5E-44 335.7 26.9 325 78-442 75-423 (427)
75 TIGR02035 D_Ser_am_lyase D-ser 100.0 3.6E-39 7.9E-44 334.1 25.1 296 79-436 69-422 (431)
76 TIGR03528 2_3_DAP_am_ly diamin 100.0 6.9E-39 1.5E-43 330.1 24.6 299 79-441 40-390 (396)
77 KOG1250 Threonine/serine dehyd 100.0 5.6E-39 1.2E-43 317.9 19.9 288 77-439 63-358 (457)
78 TIGR03844 cysteate_syn cysteat 100.0 3.7E-38 7.9E-43 324.7 23.5 289 78-435 60-380 (398)
79 KOG1395 Tryptophan synthase be 100.0 2.1E-35 4.6E-40 287.9 14.6 341 42-441 82-455 (477)
80 COG0498 ThrC Threonine synthas 100.0 8.2E-33 1.8E-37 283.3 20.9 306 55-433 54-371 (411)
81 KOG1252 Cystathionine beta-syn 100.0 3.5E-33 7.5E-38 272.9 10.9 280 79-433 51-341 (362)
82 KOG1481 Cysteine synthase [Ami 100.0 2E-30 4.3E-35 246.8 17.3 287 78-432 47-357 (391)
83 COG1350 Predicted alternative 99.9 3.5E-22 7.6E-27 194.3 19.4 314 77-441 75-423 (432)
84 PRK09225 threonine synthase; V 99.9 2.6E-21 5.5E-26 202.5 19.7 271 108-432 97-409 (462)
85 cd01560 Thr-synth_2 Threonine 99.9 1.5E-20 3.2E-25 196.9 20.9 273 108-432 96-413 (460)
86 COG3048 DsdA D-serine dehydrat 99.5 1.8E-13 3.8E-18 132.8 14.2 279 107-434 101-428 (443)
87 PF04127 DFP: DNA / pantothena 58.3 17 0.00036 33.9 4.7 27 150-176 27-53 (185)
88 COG2242 CobL Precorrin-6B meth 55.7 1.1E+02 0.0023 28.8 9.5 37 292-330 32-68 (187)
89 PRK15408 autoinducer 2-binding 51.2 2.7E+02 0.006 28.0 16.4 44 131-175 71-114 (336)
90 PF00070 Pyr_redox: Pyridine n 50.2 46 0.00099 25.8 5.4 33 144-178 2-34 (80)
91 PF11814 DUF3335: Peptidase_C3 49.4 20 0.00044 34.0 3.7 41 138-178 39-79 (207)
92 PF01210 NAD_Gly3P_dh_N: NAD-d 47.3 26 0.00056 31.3 4.0 28 147-176 5-32 (157)
93 cd01011 nicotinamidase Nicotin 47.3 53 0.0011 30.5 6.3 46 133-178 130-175 (196)
94 COG2216 KdpB High-affinity K+ 46.0 38 0.00083 36.6 5.5 93 79-201 426-519 (681)
95 COG0300 DltE Short-chain dehyd 45.3 1.9E+02 0.0042 28.6 10.0 36 140-177 6-41 (265)
96 cd01012 YcaC_related YcaC rela 43.2 89 0.0019 27.7 6.9 43 136-178 83-125 (157)
97 PRK11609 nicotinamidase/pyrazi 40.7 1.1E+02 0.0023 28.7 7.3 42 136-177 137-178 (212)
98 cd06356 PBP1_Amide_Urea_BP_lik 40.7 3.7E+02 0.0081 26.6 13.3 33 293-326 187-220 (334)
99 KOG1500 Protein arginine N-met 38.6 1E+02 0.0022 31.8 6.9 55 272-332 155-212 (517)
100 TIGR03614 RutB pyrimidine util 37.7 71 0.0015 30.4 5.6 44 134-177 144-187 (226)
101 cd01014 nicotinamidase_related 37.2 74 0.0016 28.2 5.4 44 134-177 92-135 (155)
102 PRK08813 threonine dehydratase 37.0 4.8E+02 0.01 26.8 13.0 33 298-332 84-116 (349)
103 PRK12743 oxidoreductase; Provi 36.2 2.7E+02 0.0059 26.2 9.5 32 142-175 4-35 (256)
104 PF06325 PrmA: Ribosomal prote 35.3 1.2E+02 0.0026 30.4 7.0 48 276-330 147-194 (295)
105 PTZ00331 alpha/beta hydrolase; 34.9 1.2E+02 0.0027 28.5 6.7 43 136-178 141-183 (212)
106 cd01015 CSHase N-carbamoylsarc 34.6 88 0.0019 28.4 5.6 42 136-177 109-150 (179)
107 PRK13982 bifunctional SbtC-lik 32.2 74 0.0016 34.2 5.2 37 139-175 255-305 (475)
108 PF00857 Isochorismatase: Isoc 32.0 85 0.0019 27.9 5.0 42 135-176 106-147 (174)
109 PF06415 iPGM_N: BPG-independe 31.5 1.4E+02 0.003 28.8 6.4 50 128-177 15-73 (223)
110 PF13450 NAD_binding_8: NAD(P) 31.3 81 0.0017 24.0 4.0 24 152-175 5-28 (68)
111 PRK11440 putative hydrolase; P 31.2 1.1E+02 0.0023 28.1 5.6 42 136-177 116-157 (188)
112 cd00431 cysteine_hydrolases Cy 30.9 1.7E+02 0.0038 25.5 6.7 42 136-177 105-146 (161)
113 TIGR03669 urea_ABC_arch urea A 29.7 6.2E+02 0.013 25.8 14.4 32 293-325 188-219 (374)
114 KOG2616 Pyridoxalphosphate-dep 29.2 95 0.002 30.0 4.7 38 380-418 151-188 (266)
115 PF12831 FAD_oxidored: FAD dep 28.9 68 0.0015 33.6 4.3 31 144-176 2-32 (428)
116 PLN02743 nicotinamidase 27.9 98 0.0021 30.0 4.8 42 135-177 145-195 (239)
117 cd01013 isochorismatase Isocho 27.8 1.7E+02 0.0037 27.3 6.3 43 136-178 137-179 (203)
118 PF00890 FAD_binding_2: FAD bi 27.4 72 0.0016 32.9 4.1 30 144-175 2-31 (417)
119 PF02737 3HCDH_N: 3-hydroxyacy 26.3 1.1E+02 0.0023 28.2 4.6 27 147-175 5-31 (180)
120 PRK12483 threonine dehydratase 26.0 6.3E+02 0.014 27.5 11.0 33 298-332 88-120 (521)
121 PF13433 Peripla_BP_5: Peripla 25.9 3.1E+02 0.0067 28.5 8.2 50 270-326 172-221 (363)
122 COG1171 IlvA Threonine dehydra 25.9 6.5E+02 0.014 26.0 10.5 35 297-333 76-110 (347)
123 PF04198 Sugar-bind: Putative 25.8 3.3E+02 0.0071 26.5 8.2 90 258-353 20-110 (255)
124 PRK06847 hypothetical protein; 25.6 89 0.0019 31.5 4.3 30 143-174 6-35 (375)
125 PF01134 GIDA: Glucose inhibit 25.0 96 0.0021 32.5 4.4 28 144-173 2-29 (392)
126 PF00185 OTCace: Aspartate/orn 24.7 1.1E+02 0.0024 27.5 4.3 33 144-176 5-37 (158)
127 COG0026 PurK Phosphoribosylami 24.4 1.2E+02 0.0026 31.4 4.9 32 144-177 4-35 (375)
128 TIGR00521 coaBC_dfp phosphopan 23.8 1.2E+02 0.0025 31.8 4.8 36 140-175 185-234 (390)
129 PF01494 FAD_binding_3: FAD bi 23.7 1.1E+02 0.0024 29.9 4.5 32 144-177 4-35 (356)
130 PF00391 PEP-utilizers: PEP-ut 23.4 1.3E+02 0.0029 23.6 4.0 36 137-175 27-62 (80)
131 PRK12266 glpD glycerol-3-phosp 23.3 94 0.002 33.4 4.1 30 144-175 9-38 (508)
132 KOG1529 Mercaptopyruvate sulfu 22.9 1.5E+02 0.0033 29.5 5.1 51 274-324 215-266 (286)
133 PRK05579 bifunctional phosphop 22.5 1.2E+02 0.0025 31.9 4.5 26 150-175 212-237 (399)
134 PRK06202 hypothetical protein; 22.5 96 0.0021 29.3 3.6 37 295-331 63-99 (232)
135 PRK09126 hypothetical protein; 22.4 1E+02 0.0022 31.4 4.0 31 144-176 6-36 (392)
136 PF02527 GidB: rRNA small subu 22.3 93 0.002 28.9 3.3 38 297-336 51-88 (184)
137 PF08541 ACP_syn_III_C: 3-Oxoa 22.0 1.9E+02 0.0042 22.7 4.8 47 389-435 24-81 (90)
138 PLN02621 nicotinamidase 21.8 2.8E+02 0.0061 25.6 6.6 43 136-178 122-164 (197)
139 KOG1499 Protein arginine N-met 21.7 1.3E+02 0.0029 30.8 4.5 35 294-331 60-94 (346)
140 PF13478 XdhC_C: XdhC Rossmann 21.7 1.1E+02 0.0024 26.9 3.6 29 145-175 2-30 (136)
141 TIGR00215 lpxB lipid-A-disacch 21.1 2.3E+02 0.0049 29.2 6.3 39 136-176 85-123 (385)
142 PRK08849 2-octaprenyl-3-methyl 20.9 1.2E+02 0.0025 31.0 4.1 29 144-174 6-34 (384)
143 PRK06753 hypothetical protein; 20.3 1.3E+02 0.0028 30.3 4.3 30 144-175 3-32 (373)
144 PLN02464 glycerol-3-phosphate 20.2 1.2E+02 0.0025 33.8 4.1 31 143-175 73-103 (627)
145 TIGR03743 SXT_TraD conjugative 20.1 7.3E+02 0.016 27.8 10.3 71 106-176 165-242 (634)
No 1
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-55 Score=423.85 Aligned_cols=317 Identities=29% Similarity=0.369 Sum_probs=270.1
Q ss_pred ccccccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCe
Q 013383 64 SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTD 143 (444)
Q Consensus 64 ~~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~ 143 (444)
++++|+.+.+ ++|||.+ ++|+++.+ |.+||+||||+.++..||||+|||++++.+|.+.|+++
T Consensus 4 ~rf~R~~l~~-----~pTPiq~---L~rls~~l---------g~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~dT 66 (323)
T COG2515 4 SRFPRMELIF-----GPTPIQK---LPRLSAHL---------GVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGADT 66 (323)
T ss_pred ccCCccccCC-----CCChhhh---HHHHHHhc---------CeEEEEEcccccccccCccHHHHHHHHHhhhhhcCCcE
Confidence 5667777755 9999999 99999876 47999999999887789999999999999999999999
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCC-ccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCC
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP-QILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNG 221 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~-~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g 221 (444)
+||+||.||||..++|++|+++|++|+.++.+... -...+|.++.+.+|+ ++.++.+.+.......+..
T Consensus 67 lvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~--------- 137 (323)
T COG2515 67 LVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEEL--------- 137 (323)
T ss_pred EEEecccchhHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHH---------
Confidence 99999999999999999999999999999987551 123468888899998 9999987543111111111
Q ss_pred CccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeC
Q 013383 222 DVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDA 301 (444)
Q Consensus 222 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~v 301 (444)
+.++.+.+.+||+||+|++||.+..||..+++||.+|.+.- ..+|.|||++
T Consensus 138 ----------------------------~e~~~~~g~kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~-~~fD~vVva~ 188 (323)
T COG2515 138 ----------------------------AEEVRKQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQL-LKFDSVVVAP 188 (323)
T ss_pred ----------------------------HHHHHhcCCCCcEeccCCcCccccccHHHHHHHHHHHHhhc-cCCCEEEEeC
Confidence 11234557899999999999999999999999999998521 4799999999
Q ss_pred CChhhHHHHHHHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEec
Q 013383 302 GTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNV 381 (444)
Q Consensus 302 GtGgt~aGl~~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 381 (444)
|||||.||+..++..++++++||||.+..++...++++..+....++.++.. .+..+.+.++|+.++|+++
T Consensus 189 gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~~~~~---------~~~~v~~~~dy~~~~Yg~p 259 (323)
T COG2515 189 GSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLGLG---------SEADVLLSDDYHHPGYGKP 259 (323)
T ss_pred CCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHHHcCCC---------CCceEEEEecccCCccCCc
Confidence 9999999999999999999999999999988878888777777777766542 1245567888999999999
Q ss_pred ChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCCccchhhhhcC
Q 013383 382 FEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTLGMFGLAQRI 444 (444)
Q Consensus 382 d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~~~l~~~~~ry 444 (444)
.+|.+++++.++++|||++||+|+++++.++++++++ .++.+++|+||||||.+|+|+|..||
T Consensus 260 ~~e~~e~i~~~~~~eGillDpVYtgKam~Glid~~~k~~f~~~~~vLfiHtGG~~gl~~y~~~~ 323 (323)
T COG2515 260 NEEDIEAIKLLARLEGILLDPVYTGKAMYGLIDLARKGEFPDGSPVLFIHTGGAPGLFAYSPRL 323 (323)
T ss_pred CHHHHHHHHHHHHhhCcccccccchHHHHHHHHHHhcccCCCCCceEEEEcCCccchhcccccC
Confidence 9999999999999999999999999999999998875 47778889999999999999999887
No 2
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=2.1e-54 Score=436.76 Aligned_cols=318 Identities=26% Similarity=0.363 Sum_probs=252.9
Q ss_pred cccccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeE
Q 013383 65 KIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDL 144 (444)
Q Consensus 65 ~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~V 144 (444)
++.++.... |+|||++ ++++++.+ |.+||+||||+|++++||||+|++.+++.+++++|.++|
T Consensus 5 ~~~~~~~~~-----~~TPl~~---~~~l~~~~---------g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~~~v 67 (331)
T PRK03910 5 RFPRLELAG-----LPTPLEP---LPRLSAAL---------GPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGADTL 67 (331)
T ss_pred cCCCccccC-----CCCCceE---hhhhhHhh---------CCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCCCEE
Confidence 344454444 9999999 88877654 469999999999664589999999999999999999999
Q ss_pred EEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccch-----hhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhc
Q 013383 145 VTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILT-----GYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAG 218 (444)
Q Consensus 145 vt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~-----~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~ 218 (444)
||+|+++||||+|+|++|+.+|++|+||||+..+..+. .|...++.||+ |+.+++.. +..+...+.++
T Consensus 68 vt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~--~~~~~~~~~a~---- 141 (331)
T PRK03910 68 ITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGT--DMDAQLEELAE---- 141 (331)
T ss_pred EEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccc--hHHHHHHHHHH----
Confidence 99988999999999999999999999999998765332 45667899998 99998642 11121111111
Q ss_pred CCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEE
Q 013383 219 NNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFV 298 (444)
Q Consensus 219 ~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vv 298 (444)
++....+..|++|+|+.||.+.+|+.+++.||++|+...+..||+||
T Consensus 142 ---------------------------------~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~q~~~~~~~~d~vv 188 (331)
T PRK03910 142 ---------------------------------ELRAQGRRPYVIPVGGSNALGALGYVACALEIAQQLAEGGVDFDAVV 188 (331)
T ss_pred ---------------------------------HHHHcCCceEEECCCCCCchhHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 12223345789999999999999999999999999742123699999
Q ss_pred EeCCChhhHHHHHHHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeE
Q 013383 299 VDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKF 378 (444)
Q Consensus 299 v~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 378 (444)
+|+|||||++|++.+|++++++++|||||++++...+.+.......++++.++.+ . .+....+.+++++.++.|
T Consensus 189 ~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~~g~~---~---~~~~~~~~~~~~~~~~~~ 262 (331)
T PRK03910 189 VASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAELLGLP---T---EIPRADIRLWDDYVGPGY 262 (331)
T ss_pred EeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHcCCC---c---cCCcccEEEEcCCCCCCC
Confidence 9999999999999999999999999999999876544433222334444444321 0 112345677888999999
Q ss_pred EecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCCccchhhhhcC
Q 013383 379 GNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTLGMFGLAQRI 444 (444)
Q Consensus 379 ~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~~~l~~~~~ry 444 (444)
.|+|+|++++++++++++||++||+|+|+++++++++.+. .+.++++||+||||||+|+|++++||
T Consensus 263 ~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~i~tGG~~~~~~~~~~~ 329 (331)
T PRK03910 263 GVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLFIHTGGAPALFAYADAF 329 (331)
T ss_pred CCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHcCCCCCCCeEEEEECCChHhhhhhhhhh
Confidence 9999999999999999999999999999999999998754 35567899999999999999999997
No 3
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=7.2e-53 Score=426.57 Aligned_cols=317 Identities=24% Similarity=0.290 Sum_probs=249.5
Q ss_pred cccccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCC-CcchhhHHHHhhHHHHHhcCCCe
Q 013383 65 KIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPL-VNGNKARKMDALLPLLEDHIVTD 143 (444)
Q Consensus 65 ~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~-~ggnK~Rkl~~~l~~a~~~g~~~ 143 (444)
.++++.+.. |+|||++ ++++++.+|. +.+||+||||+|+++ +||||+|++.+++.+|+++|+++
T Consensus 4 ~~~~~~l~~-----g~TPl~~---~~~l~~~~g~-------~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~ 68 (337)
T TIGR01274 4 RFPRYPLTF-----GPSPIHP---LPRLSQHLGG-------KVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGCTT 68 (337)
T ss_pred cCCccccCC-----CCCCceE---hHhhHHhcCC-------CceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCCCE
Confidence 456666655 9999999 8888876642 359999999999653 59999999999999999999999
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCC-cc----chhhhHHHHhCCc-EEEeCCcchh--hHHHHHHHHhhh
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP-QI----LTGYNLISTIYGK-VTYVPRTHYA--HRIEMLKSYANL 215 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~-~~----~~~~~~~~~~~Ga-V~~v~~~~~~--~~~~~~~~~A~~ 215 (444)
|+++||++||||+|+|++|+++|++|+||||+..+ .. +..|..+++.||+ |+.++.. |+ .++....+ .
T Consensus 69 vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~-~~~~~~~~~~~a-~-- 144 (337)
T TIGR01274 69 LVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDG-FDIGHRNSWERA-L-- 144 (337)
T ss_pred EEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCc-ccccchHHHHHH-H--
Confidence 99999999999999999999999999999998542 11 1357778999998 9888753 32 11111000 0
Q ss_pred hhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCC-ccHHHHHHHHHHHHHHHHhHH-cCCCC
Q 013383 216 VAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGA-GDAVALLGVFRLLQYLSQDHL-LGRKR 293 (444)
Q Consensus 216 ~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~-~np~~~~G~~t~~~Ei~~q~~-~g~~~ 293 (444)
.++.+.++..|++|.+. .+|.+.+|+.++++||++|.. .+ ..
T Consensus 145 -----------------------------------~~~~~~~~~~~~i~~~~~~~~~~~~G~~~~~~Ei~eq~~~~~-~~ 188 (337)
T TIGR01274 145 -----------------------------------EEVRGAGGKPYPIPAGCSDHPLGGLGFVGFAFEVREQEGELG-FK 188 (337)
T ss_pred -----------------------------------HHHHhcCCceEEeCCCCCCCccchhHHHHHHHHHHHHHHhcC-CC
Confidence 01112223457888874 479999999999999999974 33 37
Q ss_pred cCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecc
Q 013383 294 AIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERC 373 (444)
Q Consensus 294 ~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~ 373 (444)
||+||+|+|||||++|++.+++.+++++|||||+++++..............+++.++... . .....+.+..++
T Consensus 189 ~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~---~~~~~~~~~~~~ 262 (337)
T TIGR01274 189 FDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQILRIARNTAEKIGLER---D---ITEDDVVLDTRF 262 (337)
T ss_pred CCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCC---C---cCccceEEeccc
Confidence 9999999999999999999999999999999999999865443333333444555444321 1 111224567778
Q ss_pred cCCeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCCccchhhhh
Q 013383 374 RPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTLGMFGLAQ 442 (444)
Q Consensus 374 ~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~~~l~~~~~ 442 (444)
.++.|+++|++++++++++++++||++||+|||++++++++++++ .++++++||+|||||.+++|++..
T Consensus 263 ~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~~~~g~~~~~~~vv~~htGG~~~~~~~~~ 332 (337)
T TIGR01274 263 AYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEMIRRGEFKEGSNVLYAHLGGAPALNAYSF 332 (337)
T ss_pred cCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHhcCCCCCCCEEEEEeCCChhhhhhhHH
Confidence 899999999999999999999999999999999999999998875 477889999999999999999865
No 4
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=5.6e-53 Score=427.37 Aligned_cols=319 Identities=25% Similarity=0.290 Sum_probs=248.1
Q ss_pred cccccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCC-CcchhhHHHHhhHHHHHhcCCCe
Q 013383 65 KIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPL-VNGNKARKMDALLPLLEDHIVTD 143 (444)
Q Consensus 65 ~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~-~ggnK~Rkl~~~l~~a~~~g~~~ 143 (444)
.++++.+.+ |+|||++ ++++++.+|. ..+||+||||+|+++ +||||+|++.+++.+|+++|+++
T Consensus 5 ~~~~~~l~~-----g~TPL~~---~~~l~~~~g~-------~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~ 69 (337)
T PRK12390 5 KFPRYPLTF-----GPTPIHP---LKRLSAHLGG-------KVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGADT 69 (337)
T ss_pred CCCccccCC-----CCCccee---HHHHHHHhCC-------CCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCCCE
Confidence 345556655 9999999 8888765531 168999999999653 49999999999999999999999
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCcc-----chhhhHHHHhCCc-EEEeCCcchhh-HHHHHHHHhhhh
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQI-----LTGYNLISTIYGK-VTYVPRTHYAH-RIEMLKSYANLV 216 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~-----~~~~~~~~~~~Ga-V~~v~~~~~~~-~~~~~~~~A~~~ 216 (444)
|+++||++||||+|+|++|+++|++|+|||+...|.. +..|..+++.||+ |+.++.. |+. ..+..+. +.+
T Consensus 70 vvs~G~s~GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~-~~~~~~~~~~~-~~~- 146 (337)
T PRK12390 70 LVSIGGVQSNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDG-FDIGIRKSWED-ALE- 146 (337)
T ss_pred EEEeCCCccHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCC-cchhHHHHHHH-HHH-
Confidence 9999999999999999999999999999987755431 3346678899998 9999863 320 0011100 000
Q ss_pred hcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCc-cHHHHHHHHHHHHHHHHhHH-cCCCCc
Q 013383 217 AGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAG-DAVALLGVFRLLQYLSQDHL-LGRKRA 294 (444)
Q Consensus 217 a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~-np~~~~G~~t~~~Ei~~q~~-~g~~~~ 294 (444)
.+.+..+..|.+|.+.. +|.+.+||.++++||++|.. +++ .|
T Consensus 147 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~Ei~~q~~~~~~-~~ 190 (337)
T PRK12390 147 -----------------------------------DVRAAGGKPYAIPAGASDHPLGGLGFVGFAEEVRAQEAELGF-KF 190 (337)
T ss_pred -----------------------------------HHHhCCCceEEeCCcCCCCCcccHHHHHHHHHHHHHHHhcCC-CC
Confidence 00122345687888744 59999999999999999963 443 69
Q ss_pred CEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeeccc
Q 013383 295 IKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCR 374 (444)
Q Consensus 295 d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~ 374 (444)
|+||+|+|||||++|++.+++++++++|||||+++++...+.+.+......+++.++.+. . .....+.+++++.
T Consensus 191 d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~~~~~~a~~~g~~~---~---~~~~~~~~~~~~~ 264 (337)
T PRK12390 191 DYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLRIARNTAELVELGR---D---ITEDDVVLDERYA 264 (337)
T ss_pred CEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHHhCCCC---C---CChhhEEEecccc
Confidence 999999999999999999999999999999999998765444433333333444443321 0 1123455677889
Q ss_pred CCeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCCccchhhhhc
Q 013383 375 PRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTLGMFGLAQR 443 (444)
Q Consensus 375 ~~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~~~l~~~~~r 443 (444)
++.|.|+|++++++|+++++++||++||+|||+++++++++.++ .++++++||||||||.+++|++..+
T Consensus 265 ~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~~~~g~~~~~~~vv~~htgg~~~~~~~~~~ 334 (337)
T PRK12390 265 GPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDLVRKGEFPEGSKVLYAHLGGVPALNAYSFL 334 (337)
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCChHhhhcchhh
Confidence 99999999999999999999999999999999999999999875 4778899999999999999988654
No 5
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=1.1e-52 Score=420.61 Aligned_cols=306 Identities=23% Similarity=0.313 Sum_probs=241.3
Q ss_pred cccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHH
Q 013383 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHAT 156 (444)
Q Consensus 77 ~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~ 156 (444)
...+|||++ ++++++.. |.+||+||||+|++.+||||+|++.+++.+++++|++.||++|+|+||||+
T Consensus 4 ~~~~TPl~~---~~~l~~~~---------g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~~~vv~~g~ssGN~g~ 71 (311)
T TIGR01275 4 IPWPTPIQY---LPRISREI---------GAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGADTVITVGAIQSNHAR 71 (311)
T ss_pred CCCCCccee---chhhhhhc---------CCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCCCEEEEcCCchhHHHH
Confidence 568999999 77776543 468999999999543589999999999999999999999999889999999
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHH
Q 013383 157 AVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLT 235 (444)
Q Consensus 157 alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~ 235 (444)
|+|++|+++|++|+||||++.+. ..+..+++.||+ |+.+++..|.+..+.....
T Consensus 72 alA~~a~~~G~~~~ivvp~~~~~--~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~~~~----------------------- 126 (311)
T TIGR01275 72 ATALAAKKLGLDAVLVLREKEEL--NGNLLLDKLMGAETRVYSAEEYFEIMKYAEEL----------------------- 126 (311)
T ss_pred HHHHHHHHhCCceEEEecCCccC--CCCHHHHHHcCCEEEEECchhhhhhHHHHHHH-----------------------
Confidence 99999999999999999986432 235556799998 9899865455433222111
Q ss_pred hhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHH
Q 013383 236 AQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAI 315 (444)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~ 315 (444)
+.++.+.++.+|++|+++.||.+..|+.++++||++|+. ++..||+||+|+|||||++|++.+++
T Consensus 127 --------------~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~EI~~q~~-~~~~~D~vv~~vGtGgt~~Gi~~~lk 191 (311)
T TIGR01275 127 --------------AEELEKEGRKPYVIPVGGSNSLGTLGYVEAVLEIATQLE-SEVKFDSIVVAAGSGGTIAGLSLGLS 191 (311)
T ss_pred --------------HHHHHhcCCCeEEECCCCCcHHHHHHHHHHHHHHHHHHh-cCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 111122334678999999999999999999999999973 22369999999999999999999999
Q ss_pred hcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHHH
Q 013383 316 CLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQL 395 (444)
Q Consensus 316 ~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~~ 395 (444)
+++++++||||+++..............+.+.+.++.+. ...+.+++++.+..|.|+|++++++|++++++
T Consensus 192 ~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~---------~~~~~~~~~~~~~~~~v~d~e~~~~~~~la~~ 262 (311)
T TIGR01275 192 ILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKA---------SEVIPELDDYSGPGYGKPTSEVAEIVKKVASR 262 (311)
T ss_pred HhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCC---------CCCEEEECCcccCcCCCCCHHHHHHHHHHHHH
Confidence 999999999999876532222222223334444433210 13456677788889999999999999999999
Q ss_pred hCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhhhhc
Q 013383 396 TGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQR 443 (444)
Q Consensus 396 eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~~~r 443 (444)
+||++||+|+|++++++++++++...++++||+||||||+++|++..|
T Consensus 263 ~gi~vep~~sg~~~aa~~~~~~~~~~~~~~vv~i~tGG~~g~~~~~~~ 310 (311)
T TIGR01275 263 EGIILDPVYTGKAFYGLIDLIRKGELGEKGILFIHTGGISGLFAYGDK 310 (311)
T ss_pred hCCccCcchHHHHHHHHHHHHHhCCCCCCCEEEEECCCcccccccccc
Confidence 999999998999999999887543224679999999999999998766
No 6
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=6.8e-51 Score=410.85 Aligned_cols=312 Identities=25% Similarity=0.350 Sum_probs=238.9
Q ss_pred cccccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeE
Q 013383 65 KIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDL 144 (444)
Q Consensus 65 ~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~V 144 (444)
+++++++.. ++|||++ ++++++.. |++||+||||+|++..||||+|++.+++.++++.|+++|
T Consensus 11 ~~~~~~l~~-----~~TPl~~---~~~l~~~~---------g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~~~v 73 (329)
T PRK14045 11 KFPRVELIP-----WETPIQY---LPNISREL---------GADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGADVV 73 (329)
T ss_pred cCCCcccCC-----CCCCccc---chhhHHHh---------CCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCCCEE
Confidence 445666654 8999999 88877544 479999999999654589999999999999999999999
Q ss_pred EEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCc-chhhHHHHHHHHhhhhhcCCCC
Q 013383 145 VTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGD 222 (444)
Q Consensus 145 vt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~~a~~~g~ 222 (444)
||+|+|+||||+|+|++|+.+|++|++|||...+. .+|..+++.||+ ++.++.. .+...+.+. +.
T Consensus 74 v~~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~-~~---------- 140 (329)
T PRK14045 74 ITVGAVHSNHAFVTGLAAKKLGLDAVLVLRGKEEL--KGNYLLDKIMGIETRVYEAKDSFELMKYAE-EV---------- 140 (329)
T ss_pred EEeCccHHHHHHHHHHHHHHcCCeEEEEEeCCCCC--CcCHHHHHHCCCEEEEECCCcccchHHHHH-HH----------
Confidence 99899999999999999999999999999976542 345566799997 7777632 221111111 10
Q ss_pred ccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCC
Q 013383 223 VVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAG 302 (444)
Q Consensus 223 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vG 302 (444)
+.++.+.++.+|++|+|+.||.+..|+.+.+.||++|+......+|+||+|+|
T Consensus 141 ---------------------------~~~l~~~~~~~~~~p~~~~n~~~~~g~~~~~~EI~~q~~~~~~~~d~vv~~vG 193 (329)
T PRK14045 141 ---------------------------AEELKGEGRKPYIIPPGGASPVGTLGYVRAVGEIATQVKKLGVRFDSIVVAVG 193 (329)
T ss_pred ---------------------------HHHHHhcCCCEEEECCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 11122334567899999999999999999988999997422136999999999
Q ss_pred ChhhHHHHHHHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecC
Q 013383 303 TGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVF 382 (444)
Q Consensus 303 tGgt~aGl~~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d 382 (444)
||||++|++++++..+++++||||++.+....+...+..+........+.+ ... ....+.+.+.+ .|+..+
T Consensus 194 tGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~-----~~~~~~d~~~~-~y~~~~ 264 (329)
T PRK14045 194 SGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLGVK---VKV-----QEPELYDYSFG-EYGKIT 264 (329)
T ss_pred cHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCC---CCc-----cceEecccccC-CCCCCC
Confidence 999999999999999999999999997754444444333333322222211 000 01223444444 588888
Q ss_pred hHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhhhhc
Q 013383 383 EGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQR 443 (444)
Q Consensus 383 ~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~~~r 443 (444)
++.+++|++++++|||++||+|||++++++++++++. +.+++||+|||||.+++|++..|
T Consensus 265 ~e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~~~~~-~~~~~iv~ihtGG~~g~~~~~~~ 324 (329)
T PRK14045 265 KEVAKLIRSVGTMEGLILDPVYTGKAFYGLMDLAKKG-ELGEKILFIHTGGISGTFHYGDK 324 (329)
T ss_pred HHHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHcC-CCCCCEEEEECCCcccccchHHH
Confidence 9999999999999999999999999999999998753 23789999999999999998765
No 7
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=6.2e-50 Score=400.23 Aligned_cols=298 Identities=28% Similarity=0.306 Sum_probs=232.3
Q ss_pred CCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCC-CcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHHH
Q 013383 81 GPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPL-VNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVA 159 (444)
Q Consensus 81 TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~-~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~alA 159 (444)
|||++ ++++++.+|. +.+||+||||+|+++ +||||+|++.+++.++++.|.++||++||++||||+|+|
T Consensus 1 TPl~~---~~~l~~~~g~-------~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~~~vv~~ggs~GN~g~alA 70 (307)
T cd06449 1 TPIQY---LPRLSEHLGG-------KVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGADTLVTVGGIQSNHTRQVA 70 (307)
T ss_pred Ccccc---hhHHHHhhCC-------CCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHH
Confidence 89999 8888876643 468999999999653 389999999999999999999999999889999999999
Q ss_pred HHHHHhCCeEEEEecCCCCcc-----chhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHH
Q 013383 160 VSCAERGLKSHLLLRGEQPQI-----LTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEAS 233 (444)
Q Consensus 160 ~aaa~~Gl~~~i~~~~~~~~~-----~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~ 233 (444)
++|+.+|++|+||||+..|.. +..|..+++.||+ |+.++...+.......+..++
T Consensus 71 ~~a~~~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~------------------- 131 (307)
T cd06449 71 AVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAE------------------- 131 (307)
T ss_pred HHHHHcCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHH-------------------
Confidence 999999999999999877631 1246667899998 999986432211111111110
Q ss_pred HHhhhhhccccccccccccccccCCcEEEecCCCc-cHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHH
Q 013383 234 LTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAG-DAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGL 312 (444)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~-np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~ 312 (444)
++.+..+.+|++|+++. ||.+.+|+.++++||++|+...+..||+||+|+|||||++|++.
T Consensus 132 ------------------~~~~~~~~~~~~~~~~~~~~~~~~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~ 193 (307)
T cd06449 132 ------------------EVEAKGGKPYVIPAGGSEHPLGGLGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSV 193 (307)
T ss_pred ------------------HHHHcCCceEEecCCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHH
Confidence 11122335688899876 99999999999999999984222369999999999999999999
Q ss_pred HHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHH
Q 013383 313 GAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRI 392 (444)
Q Consensus 313 ~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~l 392 (444)
+++++++.+|||||+++++...+.+....+........+. + .....+.+.+++.++.|+|+|+|++++|+++
T Consensus 194 ~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~---~-----~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l 265 (307)
T cd06449 194 GLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGL---E-----VKEEDVVLDDDYAAPEYGIPNDETIEAIKLC 265 (307)
T ss_pred HHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCC---C-----CCcccEEEecCcccCCCCCCCHHHHHHHHHH
Confidence 9999999999999999987654433322221111111111 1 1123456777888999999999999999999
Q ss_pred HHHhCCcccccccHHHHHHHHHHhhhc-CCCCCeEEEEEcCC
Q 013383 393 AQLTGILVDPVYTLAAWEMATLLSDEK-LKQDADVVMLHTGG 433 (444)
Q Consensus 393 a~~eGI~vEP~ysaaa~aal~~l~~~~-~~~g~~Vv~i~TGG 433 (444)
++++||++||+|||++++++++++++. ++++++||+|||||
T Consensus 266 a~~~Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~i~TGG 307 (307)
T cd06449 266 ARLEGIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLFIHLGG 307 (307)
T ss_pred HHHhCCccccchHHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Confidence 999999999999999999999988753 66788999999998
No 8
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=1.4e-46 Score=385.57 Aligned_cols=345 Identities=16% Similarity=0.122 Sum_probs=244.6
Q ss_pred ceeecccchhhHHHHHHh--hhhcccCCC----ccccccccccccccccCCCCCccccccccccccCCCccccCCCCeEE
Q 013383 37 GICNVRMSGEELLSRLLD--RKWALTSPD----SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFY 110 (444)
Q Consensus 37 ~~~~~~~~~e~~~~~l~~--~~w~~~~~~----~~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~ 110 (444)
|---.++-||+||++|.+ ..|.....| ++++.+...| +|++|||++ ++++++.+| +++||
T Consensus 12 g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~---~grpTPL~~---~~~Ls~~~g--------g~~Iy 77 (397)
T PRK04346 12 GEFGGRFVPETLMPALEELEEAYEKAKNDPEFQAELDYLLKNY---VGRPTPLYF---AERLSEHLG--------GAKIY 77 (397)
T ss_pred cCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---cCCCCCceE---hHHHHHHcC--------CCeEE
Confidence 333457889999999998 677655555 4555555555 889999999 999998875 57999
Q ss_pred EEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHh
Q 013383 111 VVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTI 190 (444)
Q Consensus 111 vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~ 190 (444)
+||||+| | +||||+|.....+..|+++|+++||+. .++||||+|+|++|+++|++|+||||..+.+.+..|+.+|++
T Consensus 78 lK~Edln-p-tGS~K~r~al~~~l~A~~~Gk~~vIae-tgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~ 154 (397)
T PRK04346 78 LKREDLN-H-TGAHKINNVLGQALLAKRMGKKRIIAE-TGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKL 154 (397)
T ss_pred EEECCCC-C-ccchHHHHHHHHHHHHHHcCCCeEEEe-cCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHH
Confidence 9999999 5 789999999888888999999988872 245899999999999999999999998654444467888999
Q ss_pred CCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCC-Cc
Q 013383 191 YGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG-AG 268 (444)
Q Consensus 191 ~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g-~~ 268 (444)
||| |+.|+.+.....+...++ .+.|+.+. ....|+++.. +.
T Consensus 155 lGA~Vv~v~~g~~~l~da~~ea----------~~~~~~~~---------------------------~~~~y~~gs~~gp 197 (397)
T PRK04346 155 LGAEVVPVTSGSRTLKDAVNEA----------LRDWVTNV---------------------------EDTHYLIGSVAGP 197 (397)
T ss_pred CCCEEEEECCCCCCHHHHHHHH----------HHHHHHhC---------------------------CCCeEEeCCcCCC
Confidence 998 999986432222222221 11343211 1224444322 11
Q ss_pred c--HHHH-HHHHHHHHHHHHhHH--cCCCCcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCChh-------HHH
Q 013383 269 D--AVAL-LGVFRLLQYLSQDHL--LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTID-------GYK 336 (444)
Q Consensus 269 n--p~~~-~G~~t~~~Ei~~q~~--~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~~-------~~~ 336 (444)
+ |..+ .|+.+++.||++|+. .+ ..||+||+||||||+++|++.+|+. ++.++|||||+.+... .+.
T Consensus 198 hp~p~~v~~~q~tig~Ei~eQ~~~~~g-~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~ 275 (397)
T PRK04346 198 HPYPTMVRDFQSVIGEEAKAQILEKEG-RLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLT 275 (397)
T ss_pred CCchHHHHHhcchHHHHHHHHHHHhhC-CCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhh
Confidence 2 3444 488889999999983 34 3799999999999999999999974 7899999999987521 111
Q ss_pred HHHHHHHHHHH--------------HHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHHHhCCcccc
Q 013383 337 QQEKNLISEFK--------------RLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDP 402 (444)
Q Consensus 337 ~~~~~l~~~~~--------------~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~~eGI~vEP 402 (444)
.......++.. .++.. +...+.+++....+.+...+..+.|+|+|+++++++|+++|||+.++
T Consensus 276 ~g~~g~~~g~~~~~~~~~~g~~~~~~sis~---gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~ 352 (397)
T PRK04346 276 KGRPGVLHGAKTYLLQDEDGQILETHSISA---GLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPAL 352 (397)
T ss_pred cCCeeeeccccceecccCCCccCCCceeec---cccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEecc
Confidence 11000000000 01111 11122233333333444445678899999999999999999999887
Q ss_pred cccHHHHHHHHHHhhhcCCCCCeEEEEEcC-CCccchhhhh
Q 013383 403 VYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFGLAQ 442 (444)
Q Consensus 403 ~ysaaa~aal~~l~~~~~~~g~~Vv~i~TG-G~~~l~~~~~ 442 (444)
. ++.++|+++++.+ .+.++++||+++|| |+.++..+++
T Consensus 353 e-sa~AlA~a~kla~-~l~~~~~Vvv~lsGrG~kd~~~~~~ 391 (397)
T PRK04346 353 E-SSHALAYALKLAP-TLGKDQIIVVNLSGRGDKDVFTVAK 391 (397)
T ss_pred H-HHHHHHHHHHhhh-hcCCCCeEEEEeCCCCccCHHHHHH
Confidence 6 5788998888754 35678899999999 9988776543
No 9
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.8e-45 Score=376.62 Aligned_cols=343 Identities=15% Similarity=0.085 Sum_probs=245.5
Q ss_pred CCceeecccchhhHHHHHHh--hhhcccCCC----ccccccccccccccccCCCCCccccccccccccCCCccccCCCCe
Q 013383 35 PQGICNVRMSGEELLSRLLD--RKWALTSPD----SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRC 108 (444)
Q Consensus 35 ~~~~~~~~~~~e~~~~~l~~--~~w~~~~~~----~~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~ 108 (444)
.-|.--.++-||+||++|.+ ..|.....| +++..+...| ++++|||++ ++++++.+| +.+
T Consensus 14 ~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~---~g~pTPL~~---~~~Ls~~~G--------g~~ 79 (402)
T PRK13028 14 FFGEYGGQFVPPELKPALDELEAAYEEIKKDPDFIAELRYLLKHY---VGRPTPLYH---AKRLSEELG--------GAQ 79 (402)
T ss_pred CcCCcCCEeCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCCCCCeee---hHHhHhhcC--------CCe
Confidence 33444567899999999998 667655555 5555565555 889999999 999988775 579
Q ss_pred EEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHH
Q 013383 109 FYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLIS 188 (444)
Q Consensus 109 l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~ 188 (444)
||+||||+| | +||+|+|.+...+..|+++|+++||+.. ++||||+|+|++|+.+|++|+||||..+++.+..|+.+|
T Consensus 80 IylK~Edln-p-tGS~K~r~al~~~l~A~~~G~~~vI~et-gsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~m 156 (402)
T PRK13028 80 IYLKREDLN-H-TGAHKINNCLGQALLAKRMGKKRLIAET-GAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRM 156 (402)
T ss_pred EEEEECCCC-C-CcchHHHHHHHHHHHHHHcCCCeEEEec-CcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHH
Confidence 999999999 5 7999999988888889999998888622 458999999999999999999999987665555678889
Q ss_pred HhCCc-EEEeCCc--chhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecC
Q 013383 189 TIYGK-VTYVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNE 265 (444)
Q Consensus 189 ~~~Ga-V~~v~~~--~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~ 265 (444)
++||| |+.|+.+ .+.+. ..++ . ..|.. ......|+++.
T Consensus 157 r~~GAeVi~v~~g~~~~~~a--~~~a-~---------~~~~~---------------------------~~~~~~y~~~s 197 (402)
T PRK13028 157 KLLGAEVVPVTRGGRTLKEA--VDSA-F---------EDYLK---------------------------DPDNTHYAIGS 197 (402)
T ss_pred HHcCCEEEEEcCCCCCHHHH--HHHH-H---------HHHHH---------------------------hcCCcEEEecC
Confidence 99998 9999853 33321 1111 0 11221 11223455543
Q ss_pred C---CccHHHH-HHHHHHHHHHHHhHH--cCCCCcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccC--------C
Q 013383 266 G---AGDAVAL-LGVFRLLQYLSQDHL--LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVD--------T 331 (444)
Q Consensus 266 g---~~np~~~-~G~~t~~~Ei~~q~~--~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~--------~ 331 (444)
. ...|..+ .|+.+++.||.+|+. .+ ..||+||+||||||+++|++.+|++ +++++|||||+.+ +
T Consensus 198 ~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g-~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~a 275 (402)
T PRK13028 198 VVGPHPFPMMVRDFQSVIGEEAREQFLEMTG-RLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHA 275 (402)
T ss_pred cCCCCCcHHHHHHHhHHHHHHHHHHHHHhhC-CCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCccccccc
Confidence 2 1224444 477788999999973 23 3699999999999999999999985 5889999999987 2
Q ss_pred hhHHHHHHHHHHHHH--------------HHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHHHhC
Q 013383 332 IDGYKQQEKNLISEF--------------KRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTG 397 (444)
Q Consensus 332 ~~~~~~~~~~l~~~~--------------~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~~eG 397 (444)
. .+........++. ..++..+ ...+.+++..+.+.+...+..+.|+|+|+++++++|+++||
T Consensus 276 a-~l~~g~~g~~~g~~~~~l~~~~g~~~~~~sia~g---l~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eG 351 (402)
T PRK13028 276 A-TLTLGKPGVIHGFKSYVLQDEDGEPAPVHSIAAG---LDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEG 351 (402)
T ss_pred c-cccCCCcceecccceeeccccCCCcCCccceecc---ccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcC
Confidence 1 1111100000000 0111111 11122233333333444456789999999999999999999
Q ss_pred CcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcC-CCccchhhh
Q 013383 398 ILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFGLA 441 (444)
Q Consensus 398 I~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TG-G~~~l~~~~ 441 (444)
|+++|. ++.++|+++++.++ +.++++||+++|| |+.++....
T Consensus 352 Ii~~~~-sa~alA~a~~~a~~-l~~~~~VVv~lsG~G~kd~~~~~ 394 (402)
T PRK13028 352 IIPALE-SSHAVAYAIKLAPE-LSKDETILVNLSGRGDKDIDYVA 394 (402)
T ss_pred CeeccH-HHHHHHHHHHhhhh-cCCCCeEEEEECCCCccCHHHHH
Confidence 999997 68999999987653 5678999999999 898876554
No 10
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=4.7e-45 Score=379.30 Aligned_cols=299 Identities=17% Similarity=0.141 Sum_probs=228.7
Q ss_pred ccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEe
Q 013383 68 QIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTC 147 (444)
Q Consensus 68 ~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~ 147 (444)
.+++.+ |+|||++ ++++++.+|. .+||+|+|++| | +||||||++.+++..|++.|.++|++.
T Consensus 82 ~v~l~e-----G~TPLv~---~~~l~~~lG~--------~~l~~K~E~~n-P-tGSfKdRga~~~v~~A~~~g~~~vv~a 143 (421)
T PRK07591 82 PVDLGP-----GFTPLVK---ADRLARELGL--------KNLYIKDDSVN-P-THSFKDRVVSVALTAARELGFTTVACA 143 (421)
T ss_pred CCcCCC-----CCCcceE---hHHHHHHhCC--------CcEEEEeCCCC-C-ccChHHHHHHHHHHHHHHcCCCEEEEe
Confidence 356655 9999999 9998877652 58999999999 7 899999999999999999999999874
Q ss_pred CcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccch
Q 013383 148 GGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWC 226 (444)
Q Consensus 148 G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~ 226 (444)
|+||||+|+|++|+++|++|+||||...+. .+..+++.||| |+.|+.. |++..+. ++++
T Consensus 144 --SsGN~g~alA~~aa~~Gl~~~I~vP~~~~~---~k~~~~~~~GA~Vi~v~g~-~d~a~~~----a~~~---------- 203 (421)
T PRK07591 144 --STGNLANSVAAHAARAGLDSCVFIPADLEA---GKIVGTLVYGPTLVAVDGN-YDDVNRL----CSEL---------- 203 (421)
T ss_pred --CCCHHHHHHHHHHHHcCCCEEEEEcCCCCH---HHHHHHHHcCCEEEEECCC-HHHHHHH----HHHH----------
Confidence 779999999999999999999999987654 35667899998 9999863 6543222 1111
Q ss_pred hhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhh
Q 013383 227 NEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTT 306 (444)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt 306 (444)
.+..+..|+++. ..||...+|++++++||++|+ ++..||+||+|+|+||+
T Consensus 204 ---------------------------~~~~~~~~~~n~-~~~p~~ieG~~Tia~Ei~eQl--~~~~pD~iv~pvG~Gg~ 253 (421)
T PRK07591 204 ---------------------------ANEHEGWGFVNI-NLRPYYAEGSKTLGYEVAEQL--GWRLPDQVVAPLASGSL 253 (421)
T ss_pred ---------------------------HHhcCCEEEecC-CCCcccccchHHHHHHHHHHc--CCCCCCEEEEeCCchHH
Confidence 111213444432 346888899999999999995 43359999999999999
Q ss_pred HHHHHHHHHhc-------CCCCeEEEEeccCChhHHHHHHHH---H----HHHHHHHhccccccCCcccccccceeeeec
Q 013383 307 AVGLGLGAICL-------GLPWEVTAIALVDTIDGYKQQEKN---L----ISEFKRLFGFLLKKSSLNEVDGEIVHWVER 372 (444)
Q Consensus 307 ~aGl~~~~~~~-------g~~~~vigV~~~~~~~~~~~~~~~---l----~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~ 372 (444)
++|++++|+++ ++.+||++||+++....+.....+ . ..++++.+..+ .+......+..+++
T Consensus 254 ~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~~-----~p~~~~~~~~~i~~ 328 (421)
T PRK07591 254 LTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAIG-----NPADGPYALDIARR 328 (421)
T ss_pred HHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheecC-----CCCCcHHHHHHHHH
Confidence 99999999987 578999999999854433222111 0 11222222111 01111234456778
Q ss_pred ccCCeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcC-CCccchhh
Q 013383 373 CRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTG-GTLGMFGL 440 (444)
Q Consensus 373 ~~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TG-G~~~l~~~ 440 (444)
+.+..+.|+|+|+++++++|++++||++||+ +|+++|+++++.++ .+.++++||+|+|| |+.+...+
T Consensus 329 ~~g~~v~Vsd~ei~~a~~~la~~eGi~~eps-saaalAal~~l~~~g~i~~~~~VV~i~tG~G~kd~~~~ 397 (421)
T PRK07591 329 TGGAIEDVTDEEIIEGIKLLARTEGIFTETA-GGVTVAVLKKLVEAGKIDPDEETVVYITGNGLKTLEAV 397 (421)
T ss_pred hCCEEEEECHHHHHHHHHHHHhcCCeeecch-HHHHHHHHHHHHHhCCCCCCCeEEEEeCCCccCCHHHH
Confidence 8899999999999999999999999999996 79999999998764 46778999999999 98876543
No 11
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=1.8e-44 Score=362.54 Aligned_cols=289 Identities=16% Similarity=0.146 Sum_probs=217.7
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAV 158 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~al 158 (444)
|+|||++ ++++++.+| ..+||+|+|++| | +||||+|++.+++.+|+++|.++||++ |+||||+|+
T Consensus 14 g~TPL~~---~~~l~~~~G--------~~~i~~K~E~~n-p-tGS~K~R~a~~~l~~a~~~g~~~lv~a--SsGN~g~al 78 (319)
T PRK06381 14 GGTPLLR---ARKLEEELG--------LRKIYLKFEGAN-P-TGTQKDRIAEAHVRRAMRLGYSGITVG--TCGNYGASI 78 (319)
T ss_pred CCCceeE---hHhhHHhcC--------CceEEEEecCCC-C-ccCcHHHHHHHHHHHHHHcCCCEEEEe--CCcHHHHHH
Confidence 8999999 888887664 268999999998 7 899999999999999999999999974 569999999
Q ss_pred HHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhh
Q 013383 159 AVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQ 237 (444)
Q Consensus 159 A~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~ 237 (444)
|++|+.+|++|+||||...+. .+..+++.||+ |+.+++. |++..+. +++
T Consensus 79 A~~aa~~G~~~~ivvp~~~~~---~~~~~l~~~GA~V~~~~~~-~~~~~~~----a~~---------------------- 128 (319)
T PRK06381 79 AYFARLYGLKAVIFIPRSYSN---SRVKEMEKYGAEIIYVDGK-YEEAVER----SRK---------------------- 128 (319)
T ss_pred HHHHHHcCCcEEEEECCCCCH---HHHHHHHHcCCEEEEcCCC-HHHHHHH----HHH----------------------
Confidence 999999999999999987754 34567899998 9999863 5432221 111
Q ss_pred hhhccccccccccccccccCCcEEEecCCCccH-HHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 238 KSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDA-VALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np-~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
+.+. +.+|+++.++.|| ...+||.++++||++|+ + ..||+||+|+|||||++|++.+|++
T Consensus 129 ---------------~~~~-~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ql--~-~~~D~vv~~vGtGgt~~Gl~~~~~~ 189 (319)
T PRK06381 129 ---------------FAKE-NGIYDANPGSVNSVVDIEAYSAIAYEIYEAL--G-DVPDAVAVPVGNGTTLAGIYHGFRR 189 (319)
T ss_pred ---------------HHHH-cCcEecCCCCCCcchHhhhHHHHHHHHHHHh--C-CCCCEEEEcCCccHHHHHHHHHHHH
Confidence 1111 2456666555465 68999999999999996 3 2699999999999999999999998
Q ss_pred c------CCCCeEEEEeccCChhHHHHHHHH--HH-----HHHHH-HhccccccCCcccc-cccceeeeecccCCeEEec
Q 013383 317 L------GLPWEVTAIALVDTIDGYKQQEKN--LI-----SEFKR-LFGFLLKKSSLNEV-DGEIVHWVERCRPRKFGNV 381 (444)
Q Consensus 317 ~------g~~~~vigV~~~~~~~~~~~~~~~--l~-----~~~~~-~i~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~v~ 381 (444)
+ ++.++|+||++.+......+...+ .. ..+.+ .++.+. ..+... ....+.++.++.+..|.|+
T Consensus 190 ~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~v~ 267 (319)
T PRK06381 190 LYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPL--VSYRSFDGDNALEAIYDSHGYAFGFS 267 (319)
T ss_pred HHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCc--ccccCCCHHHHHHHHHHcCCEEEEEC
Confidence 8 788999999998864333221110 00 01111 000000 000000 0122345667888999999
Q ss_pred ChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCc
Q 013383 382 FEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTL 435 (444)
Q Consensus 382 d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~ 435 (444)
|+|++++++++++++||++||+ +|+++|+++++.++.. .+++||+|||||.+
T Consensus 268 d~e~~~a~~~la~~egi~~eps-sa~alaa~~~~~~~~~-~~~~vv~i~tGg~~ 319 (319)
T PRK06381 268 DDEMVKYAELLRRMEGLNALPA-SASALAALVKYLKKNG-VNDNVVAVITGRRQ 319 (319)
T ss_pred HHHHHHHHHHHHHhCCcccCch-HHHHHHHHHHHHHcCC-CCCcEEEEecCCCC
Confidence 9999999999999999999998 6899999999876431 24899999999963
No 12
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=6.9e-45 Score=366.00 Aligned_cols=291 Identities=16% Similarity=0.109 Sum_probs=219.0
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHH-hcCCCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~-~~g~~~Vvt~G~s~GNhg~a 157 (444)
++|||++ ++++++.+ |.+||+|+|++| | +||||+|...+++..+. +.+.++||++ |+||||+|
T Consensus 23 ~~TPl~~---~~~l~~~~---------g~~i~~K~E~~n-p-tGS~K~R~a~~~i~~~~~~~~~~~vv~a--SsGN~g~a 86 (321)
T PRK07048 23 HRTPVLT---SRTADART---------GAQVFFKCENFQ-R-MGAFKFRGAYNALSQFSPEQRRAGVVTF--SSGNHAQA 86 (321)
T ss_pred CCCCCcc---chhhHHhc---------CCeEEEEeccCC-C-CCCeeHHHHHHHHHhhhHhhcCCcEEEe--CCCHHHHH
Confidence 8999999 88876544 469999999999 6 89999999999998866 4566789886 45999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+.+|++|+||||...|+. +..+++.||+ |+.++.. ++++.+. +++
T Consensus 87 lA~~a~~~G~~~~vvvp~~~~~~---k~~~~~~~GAeV~~~~~~-~~~~~~~----a~~--------------------- 137 (321)
T PRK07048 87 IALSARLLGIPATIVMPQDAPAA---KVAATRGYGGEVVTYDRY-TEDREEI----GRR--------------------- 137 (321)
T ss_pred HHHHHHHcCCCEEEEECCCCCHH---HHHHHHHCCCEEEEECCC-HHHHHHH----HHH---------------------
Confidence 99999999999999999987643 5567899998 9999853 4432221 111
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
+.+..+..|+.|+ .||....|+.+++.||++|+ +.||+||+|+|||||++|++.++++
T Consensus 138 ----------------l~~~~g~~~~~~~--~~~~~~~g~~t~~~EI~~q~----~~~D~vv~~vGtGG~~~Gi~~~~k~ 195 (321)
T PRK07048 138 ----------------LAEERGLTLIPPY--DHPHVIAGQGTAAKELFEEV----GPLDALFVCLGGGGLLSGCALAARA 195 (321)
T ss_pred ----------------HHHhcCCEEECCC--CCcchhhccchHHHHHHhhc----CCCCEEEEecChhHHHHHHHHHHHH
Confidence 1122223344433 45677788889999999996 3699999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHHHHHHH--HHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKNLISEF--KRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~ 394 (444)
+++.++|+|||+++++..+.+...+..... ..+++.+. .++.++...+..++++.++.+.|+|+|+++++++|++
T Consensus 196 ~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~---~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~ 272 (321)
T PRK07048 196 LSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGA---QTQHLGNYTFPIIRRLVDDIVTVSDAELVDAMRFFAE 272 (321)
T ss_pred hCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCccccc---ccCCccHHHHHHHHHhCCceEEECHHHHHHHHHHHHH
Confidence 999999999999987653332211100000 01111110 1111222344556678899999999999999999999
Q ss_pred HhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhhhh
Q 013383 395 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQ 442 (444)
Q Consensus 395 ~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~~~ 442 (444)
++||++||+ +++++++++++.+. .++++||+||||||++++.+++
T Consensus 273 ~~gi~~eps-~a~~laa~~~~~~~--~~~~~vv~i~tGGn~~~~~~~~ 317 (321)
T PRK07048 273 RMKIVVEPT-GCLGAAAALRGKVP--LKGKRVGVIISGGNVDLARFAA 317 (321)
T ss_pred hCCceeccH-HHHHHHHHHhCchh--cCCCeEEEEeCCCCCCHHHHHH
Confidence 999999997 57999999986543 3578999999999999987654
No 13
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-45 Score=363.55 Aligned_cols=288 Identities=16% Similarity=0.156 Sum_probs=228.4
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHH-h-cCCCeEEEeCcccchHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-D-HIVTDLVTCGGCQSAHAT 156 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~-~-~g~~~Vvt~G~s~GNhg~ 156 (444)
.+|||.+ .+.|++.+ |++||+|+|||| | +||||.|++.|.+..+. + +....|||+ |.||||+
T Consensus 24 ~~TPL~~---s~~Ls~~~---------g~~v~lK~E~lQ-~-~gSFK~RGA~n~i~~Ls~e~~~~~gViaa--SaGNHaQ 87 (347)
T COG1171 24 NPTPLQR---SPSLSERL---------GAEIYLKRENLQ-P-VGSFKIRGAYNKLSSLSEEEERAAGVIAA--SAGNHAQ 87 (347)
T ss_pred cCCCccc---chhhHHhh---------CceEEEeeccCc-c-cccchhhhHHHHHHhcChhhhhcCceEEe--cCCcHHH
Confidence 7999999 55555544 579999999999 6 89999999999988764 2 355779986 5699999
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHH
Q 013383 157 AVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLT 235 (444)
Q Consensus 157 alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~ 235 (444)
++|++|+++|++++||||..+|..+ +..++.||+ |++++. .|+++.+. |++++
T Consensus 88 GvA~aa~~lGi~a~IvMP~~tp~~K---v~a~r~~GaeVil~g~-~~dda~~~----a~~~a------------------ 141 (347)
T COG1171 88 GVAYAAKRLGIKATIVMPETTPKIK---VDATRGYGAEVILHGD-NFDDAYAA----AEELA------------------ 141 (347)
T ss_pred HHHHHHHHhCCCEEEEecCCCcHHH---HHHHHhcCCEEEEECC-CHHHHHHH----HHHHH------------------
Confidence 9999999999999999999998754 345799998 999887 47654332 22222
Q ss_pred hhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHH
Q 013383 236 AQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAI 315 (444)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~ 315 (444)
++.+-.|+.|++ +|..+.|+.|++.||.+|+. ..||.||||+|+||+++|++.+++
T Consensus 142 -------------------~~~G~~~i~pfD--~p~viAGQGTi~lEileq~~---~~~d~v~vpvGGGGLisGia~~~k 197 (347)
T COG1171 142 -------------------EEEGLTFVPPFD--DPDVIAGQGTIALEILEQLP---DLPDAVFVPVGGGGLISGIATALK 197 (347)
T ss_pred -------------------HHcCCEEeCCCC--CcceeecccHHHHHHHHhcc---ccCCEEEEecCccHHHHHHHHHHH
Confidence 223345666664 56677777789999999962 236999999999999999999999
Q ss_pred hcCCCCeEEEEeccCChhHHHHHHHH-H------HHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHH
Q 013383 316 CLGLPWEVTAIALVDTIDGYKQQEKN-L------ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 388 (444)
Q Consensus 316 ~~g~~~~vigV~~~~~~~~~~~~~~~-l------~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a 388 (444)
.+.|.++|||||+++.+..+.+...+ . ...+++.+ .+..++..+|++++++.++.+.|+|+++.++
T Consensus 198 ~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~-------av~~~g~~tf~i~~~~vd~~v~V~e~ei~~a 270 (347)
T COG1171 198 ALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGL-------AVKRPGDLTFEILRELVDDIVLVDEDEICAA 270 (347)
T ss_pred HhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCcccccc-------ccCCCCHHHHHHHHHcCCcEEEECHHHHHHH
Confidence 99999999999999988766554332 1 12233322 3345677889999999999999999999999
Q ss_pred HHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhhh
Q 013383 389 CHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLA 441 (444)
Q Consensus 389 ~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~~ 441 (444)
|+.+++++++.+||+ ++.++|+++....+. .++++|++|+||||.++.-++
T Consensus 271 m~~l~~~~~iI~Epa-GAlalAal~~~~~~~-~~g~~v~~ilSGgN~d~~~~~ 321 (347)
T COG1171 271 MRDLFERTKIIAEPA-GALALAALLAGKIEP-LQGKTVVVILSGGNIDFERLA 321 (347)
T ss_pred HHHHHhcCCeecccc-HHHHHHHHHhhhhhh-cCCCeEEEEecCCCCCHHHHH
Confidence 999999999999997 688999999876543 457779999999999876543
No 14
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1.3e-44 Score=363.21 Aligned_cols=292 Identities=15% Similarity=0.104 Sum_probs=218.9
Q ss_pred CCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcC---CCeEEEeCcccchHHH
Q 013383 80 GGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI---VTDLVTCGGCQSAHAT 156 (444)
Q Consensus 80 ~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g---~~~Vvt~G~s~GNhg~ 156 (444)
+|||++ ++++++.+ |.+||+|+|++| | +||||+|++.++|.+++++| .++||++ |+||||+
T Consensus 1 ~TPl~~---~~~l~~~~---------g~~i~~K~E~~n-p-tGS~K~R~a~~~l~~a~~~g~~~~~~vv~a--SsGN~g~ 64 (316)
T cd06448 1 KTPLIE---STALSKTA---------GCNVFLKLENLQ-P-SGSFKIRGIGHLCQKSAKQGLNECVHVVCS--SGGNAGL 64 (316)
T ss_pred CCCccc---cchhhHhh---------CCeEEEEeccCC-C-cCChHHHHHHHHHHHHHHhhcccCCeEEEe--CCcHHHH
Confidence 699999 88887654 468999999998 7 79999999999999999988 7889986 4599999
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHH
Q 013383 157 AVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLT 235 (444)
Q Consensus 157 alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~ 235 (444)
|+|++|+.+|++|+||||...++. +..+++.||| |+.+++..++...+. +++
T Consensus 65 alA~~a~~~G~~~~iv~p~~~~~~---k~~~l~~~GA~v~~~~~~~~~~~~~~----~~~-------------------- 117 (316)
T cd06448 65 AAAYAARKLGVPCTIVVPESTKPR---VVEKLRDEGATVVVHGKVWWEADNYL----REE-------------------- 117 (316)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHH---HHHHHHHcCCEEEEECCchHHHHHHH----HHH--------------------
Confidence 999999999999999999987643 4567899998 999886423322111 111
Q ss_pred hhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHH
Q 013383 236 AQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAI 315 (444)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~ 315 (444)
+.+..+..|+++ +..||...+||.+++.||++|+... ..||+||+|+|||||++|++++|+
T Consensus 118 -----------------l~~~~~~~~~~~-~~~n~~~~~g~~t~~~Ei~~q~~~~-~~~D~vv~~vG~Gg~~~Gv~~~~k 178 (316)
T cd06448 118 -----------------LAENDPGPVYVH-PFDDPLIWEGHSSMVDEIAQQLQSQ-EKVDAIVCSVGGGGLLNGIVQGLE 178 (316)
T ss_pred -----------------HHhccCCcEEeC-CCCCchhhccccHHHHHHHHHcccc-CCCCEEEEEeCchHHHHHHHHHHH
Confidence 112221233332 3368999999999999999996311 259999999999999999999999
Q ss_pred hcC-CCCeEEEEeccCChhHHHHHHHHH------HHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHH
Q 013383 316 CLG-LPWEVTAIALVDTIDGYKQQEKNL------ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 388 (444)
Q Consensus 316 ~~g-~~~~vigV~~~~~~~~~~~~~~~l------~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a 388 (444)
+++ ++++|+|||+++++........+. ...+++.++.+ .+....+.+.++..++.+.|+|+|++++
T Consensus 179 ~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~-------~~~~~~~~~~~~~~~~~v~Vsd~e~~~a 251 (316)
T cd06448 179 RNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAK-------TVSSQALEYAQEHNIKSEVVSDRDAVQA 251 (316)
T ss_pred hcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCC-------CcCHHHHHHHHhcCCeEEEECHHHHHHH
Confidence 997 899999999999754332211110 01222222211 1122234555566778899999999999
Q ss_pred HHHHHHHhCCcccccccHHHHHHHHHHh----hh--cCCCCCeEEEEEcCCCc-cchhhh
Q 013383 389 CHRIAQLTGILVDPVYTLAAWEMATLLS----DE--KLKQDADVVMLHTGGTL-GMFGLA 441 (444)
Q Consensus 389 ~~~la~~eGI~vEP~ysaaa~aal~~l~----~~--~~~~g~~Vv~i~TGG~~-~l~~~~ 441 (444)
+++|++++||++||+ +|++++++++.. ++ .+.++++||+|+||||. +...|.
T Consensus 252 ~~~l~~~~gi~~~~s-saa~laa~~~~~~~~~~~~~~~~~~~~Vv~iltg~n~~~~~~~~ 310 (316)
T cd06448 252 CLRFADDERILVEPA-CGAALAVVYSGKILDLQLEVLLTPLDNVVVVVCGGSNITLEQLK 310 (316)
T ss_pred HHHHHHHcCceechh-HHHHHHHHHhCcchhhhcccccCCCCeEEEEECCCCCCCHHHHH
Confidence 999999999999997 789999988532 11 35678999999999998 776543
No 15
>PLN02550 threonine dehydratase
Probab=100.00 E-value=1.1e-44 Score=385.15 Aligned_cols=292 Identities=15% Similarity=0.108 Sum_probs=225.8
Q ss_pred ccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHH-HhcCCCeEEEeCcccchHHH
Q 013383 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL-EDHIVTDLVTCGGCQSAHAT 156 (444)
Q Consensus 78 ~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a-~~~g~~~Vvt~G~s~GNhg~ 156 (444)
-++|||++ +++|++.+ |.+||+|+||+| | +||||+|++.+.+..+ .+...++||++ |+||||+
T Consensus 107 i~~TPL~~---s~~LS~~~---------g~~IylK~E~lq-p-tGSFK~RGA~n~I~~L~~e~~~~GVV~a--SaGNhAq 170 (591)
T PLN02550 107 AIESPLQL---AKKLSERL---------GVKVLLKREDLQ-P-VFSFKLRGAYNMMAKLPKEQLDKGVICS--SAGNHAQ 170 (591)
T ss_pred ccCChhhh---hHHhhHhh---------CCEEEEEEcCCC-C-CCcHHHHHHHHHHHHHHHhcCCCCEEEE--CCCHHHH
Confidence 38999999 88887665 469999999998 6 8999999999998876 45566789985 6799999
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHH
Q 013383 157 AVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLT 235 (444)
Q Consensus 157 alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~ 235 (444)
++|++|+++|++|+||||..+|.. +...++.||| |++++. .|++..+. |+++
T Consensus 171 gvA~aA~~lGika~IvmP~~tp~~---Kv~~~r~~GAeVvl~g~-~~dea~~~----A~~l------------------- 223 (591)
T PLN02550 171 GVALSAQRLGCDAVIAMPVTTPEI---KWQSVERLGATVVLVGD-SYDEAQAY----AKQR------------------- 223 (591)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHH---HHHHHHHcCCEEEEeCC-CHHHHHHH----HHHH-------------------
Confidence 999999999999999999988754 3446799998 999975 36542221 2211
Q ss_pred hhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHH
Q 013383 236 AQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAI 315 (444)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~ 315 (444)
.+..+..|+.|++ ||....|+.|++.||++|+. ..+|+||+|+||||+++|++.+++
T Consensus 224 ------------------a~e~g~~fi~pfd--dp~viaGqgTig~EI~eQl~---~~~D~VvvpVGgGGLiaGia~~lK 280 (591)
T PLN02550 224 ------------------ALEEGRTFIPPFD--HPDVIAGQGTVGMEIVRQHQ---GPLHAIFVPVGGGGLIAGIAAYVK 280 (591)
T ss_pred ------------------HHhcCCEEECCCC--ChHHHHHHHHHHHHHHHHcC---CCCCEEEEEeChhHHHHHHHHHHH
Confidence 1122235666554 68888899999999999962 158999999999999999999999
Q ss_pred hcCCCCeEEEEeccCChhHHHHHHHHH-H-HHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHH
Q 013383 316 CLGLPWEVTAIALVDTIDGYKQQEKNL-I-SEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIA 393 (444)
Q Consensus 316 ~~g~~~~vigV~~~~~~~~~~~~~~~l-~-~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la 393 (444)
.++|.+||||||+++++....+...+. + ..-..+++++ ..+..++...+.+++++.|+.+.|+|+++.+|+++++
T Consensus 281 ~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdG---iav~~~G~~t~~i~~~~vD~vV~Vsd~eI~~Ai~~l~ 357 (591)
T PLN02550 281 RVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADG---VAVKEVGEETFRLCRELVDGVVLVSRDAICASIKDMF 357 (591)
T ss_pred HhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccce---eecCCCCHHHHHHHHhhCCEEEEECHHHHHHHHHHHH
Confidence 999999999999999766443321110 0 0000112221 1222344566777889999999999999999999999
Q ss_pred HHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCCccchhh
Q 013383 394 QLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTLGMFGL 440 (444)
Q Consensus 394 ~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~~~l~~~ 440 (444)
+++|+++||+ +|+++|+++++.++ .+ ++++||+||||||++..-+
T Consensus 358 e~~givvEpA-GA~alAall~~~~~~~~-~g~~Vv~vlsGgNid~~~l 403 (591)
T PLN02550 358 EEKRSILEPA-GALALAGAEAYCKYYGL-KDENVVAITSGANMNFDRL 403 (591)
T ss_pred HHCCCEEeHH-HHHHHHHHHHHHHhcCC-CCCeEEEEecCCCCCHHHH
Confidence 9999999998 78999999987653 34 6789999999999987543
No 16
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=1e-44 Score=364.97 Aligned_cols=290 Identities=14% Similarity=0.070 Sum_probs=219.1
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcC--CCeEEEeCcccchHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI--VTDLVTCGGCQSAHAT 156 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g--~~~Vvt~G~s~GNhg~ 156 (444)
|+|||++ ++++++.+ |.+||+|+|++| | +||||+|++.+++..+.+++ .+.||+. |+||||+
T Consensus 20 ~~TPl~~---~~~l~~~~---------g~~i~~K~E~~n-p-tGS~K~Rga~~~l~~a~~~~~~~~~vv~a--SsGN~g~ 83 (322)
T PRK06110 20 PPTPQYR---WPLLAERL---------GCEVWVKHENHT-P-TGAFKVRGGLVYFDRLARRGPRVRGVISA--TRGNHGQ 83 (322)
T ss_pred cCCCccc---chhHHHHh---------CCeEEEEeccCC-C-cCCcHHHHHHHHHHHhhhhcCCCceEEEE--CCCHHHH
Confidence 9999999 88887655 468999999998 6 79999999999999987764 4567764 6899999
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHH
Q 013383 157 AVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLT 235 (444)
Q Consensus 157 alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~ 235 (444)
|+|++|+++|++|+||||...+.. +..+++.||+ |+.++. .|++.... +.+
T Consensus 84 alA~~a~~~G~~~~ivvp~~~~~~---k~~~i~~~GA~V~~~~~-~~~~~~~~----a~~-------------------- 135 (322)
T PRK06110 84 SVAFAARRHGLAATIVVPHGNSVE---KNAAMRALGAELIEHGE-DFQAAREE----AAR-------------------- 135 (322)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHH---HHHHHHHcCCEEEEECC-CHHHHHHH----HHH--------------------
Confidence 999999999999999999987643 3457899998 988875 35432211 111
Q ss_pred hhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHH
Q 013383 236 AQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAI 315 (444)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~ 315 (444)
+.+. .++|++|.. ||....||.+++.||++|. +.+|+||+|+||||+++|++.+++
T Consensus 136 -----------------~~~~-~~~~~~~~~--~~~~~~G~~t~~~Ei~~q~----~~~D~vv~pvG~Gg~~~Gv~~~~k 191 (322)
T PRK06110 136 -----------------LAAE-RGLHMVPSF--HPDLVRGVATYALELFRAV----PDLDVVYVPIGMGSGICGAIAARD 191 (322)
T ss_pred -----------------HHHh-cCCEEcCCC--CChHHhccchHHHHHHhhC----CCCCEEEEecCHHHHHHHHHHHHH
Confidence 1111 235666643 6778899999999999995 368999999999999999999999
Q ss_pred hcCCCCeEEEEeccCChhHHHHHHHHH-HH-HHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHH
Q 013383 316 CLGLPWEVTAIALVDTIDGYKQQEKNL-IS-EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIA 393 (444)
Q Consensus 316 ~~g~~~~vigV~~~~~~~~~~~~~~~l-~~-~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la 393 (444)
..++++||+|||+++++..+.....+. .. ....+++.++ ....+.+..+++++++.++.+.|+|+|+++++++|+
T Consensus 192 ~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl---~~~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~ 268 (322)
T PRK06110 192 ALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGM---ACRTPDPEALEVIRAGADRIVRVTDDEVAAAMRAYF 268 (322)
T ss_pred HhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCccccc---CCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHH
Confidence 999999999999988765332211110 00 0001112111 111111234555678899999999999999999999
Q ss_pred HHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhhhh
Q 013383 394 QLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQ 442 (444)
Q Consensus 394 ~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~~~ 442 (444)
+++|+++||+ +++++++++++.+. . ++++||+|+||||++...+.+
T Consensus 269 ~~~gi~~e~s-saa~laa~~~~~~~-~-~~~~Vv~i~tGgn~d~~~~~~ 314 (322)
T PRK06110 269 TDTHNVAEGA-GAAALAAALQERER-L-AGKRVGLVLSGGNIDRAVFAR 314 (322)
T ss_pred HHcCcEEehH-HHHHHHHHHhChhh-h-CCCcEEEEECCCCCCHHHHHH
Confidence 9999999997 68999999886432 3 578999999999999876643
No 17
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=8.2e-45 Score=375.04 Aligned_cols=286 Identities=14% Similarity=0.119 Sum_probs=218.6
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhc-CCCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDH-IVTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~-g~~~Vvt~G~s~GNhg~a 157 (444)
++|||++ ++++++.+ |++||+|+|++| | +||||+|.+.+.+..+.+. +.++||++ |+||||++
T Consensus 19 ~~TPl~~---~~~Ls~~~---------g~~iylK~E~lq-p-tGSfK~RgA~n~i~~l~~~~~~~gVV~a--SaGNhg~a 82 (403)
T PRK08526 19 NKTPFAY---APFLSKIS---------GAEVYLKKENLQ-I-TGAYKIRGAYNKIANLSEEQKQHGVIAA--SAGNHAQG 82 (403)
T ss_pred CCCCccc---hHHHHHHh---------CCeEEEEecCCC-C-CCCCHHHHHHHHHHhccHhhcCCEEEEE--CccHHHHH
Confidence 8999999 88887655 469999999999 6 8999999999998876543 45789884 77999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+++|++|+||||...|..+ ...++.||| |+.++. .|++..+. |.++
T Consensus 83 vA~aa~~~Gi~~~IvmP~~~p~~k---~~~~r~~GA~Vv~~g~-~~~~a~~~----a~~~-------------------- 134 (403)
T PRK08526 83 VAISAKKFGIKAVIVMPEATPLLK---VSGTKALGAEVILKGD-NYDEAYAF----ALEY-------------------- 134 (403)
T ss_pred HHHHHHHcCCCEEEEEcCCCCHHH---HHHHHhCCCEEEEECC-CHHHHHHH----HHHH--------------------
Confidence 999999999999999999887543 346899998 998875 45532221 1111
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
.+..+.+|+.|+ .||....|+.+++.||++|+ +.||+||+|+||||+++|++.+++.
T Consensus 135 -----------------a~~~g~~~v~p~--~~~~~i~G~gtia~EI~eq~----~~~D~vvvpvGgGGl~aGia~~~k~ 191 (403)
T PRK08526 135 -----------------AKENNLTFIHPF--EDEEVMAGQGTIALEMLDEI----SDLDMVVVPVGGGGLISGIASAAKQ 191 (403)
T ss_pred -----------------HHhcCCEeeCCC--CCHHHHhhhHHHHHHHHHhc----CCCCEEEEecChHHHHHHHHHHHHH
Confidence 112234555554 46778889999999999996 3699999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHH-H-----HHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKN-L-----ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~-l-----~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~ 390 (444)
++|.++|||||+++++..+.+...+ . ..++++.+ .+..+++..+.++.++.++.+.|+|+++.+|++
T Consensus 192 ~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgi-------av~~~~~~~~~~~~~~vd~~v~V~d~ei~~A~~ 264 (403)
T PRK08526 192 INPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGI-------AVRDASPINLAIILECVDDFVQVDDEEIANAIL 264 (403)
T ss_pred hCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccc-------cCCCCCHHHHHHHHHhCCEEEEECHHHHHHHHH
Confidence 9999999999999987643322111 0 11122211 111223344455567788899999999999999
Q ss_pred HHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhh
Q 013383 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGL 440 (444)
Q Consensus 391 ~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~ 440 (444)
+|++++|+++||+ +|+++|+++... ..+.++++||+|+||||++..-+
T Consensus 265 ~l~~~~gi~ve~a-ga~~lAall~~~-~~~~~~~~Vv~ilsGGnid~~~~ 312 (403)
T PRK08526 265 FLLEKQKIVVEGA-GAASVAALLHQK-IDLKKGKKIGVVLSGGNIDVQML 312 (403)
T ss_pred HHHHhcCcEeeHH-HHHHHHHHHhCc-cccccCCeEEEEECCCCCCHHHH
Confidence 9999999999997 688999988532 23446889999999999987654
No 18
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=9.1e-45 Score=365.28 Aligned_cols=287 Identities=12% Similarity=0.036 Sum_probs=216.1
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCe-EEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTD-LVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~-Vvt~G~s~GNhg~a 157 (444)
++|||++ ++++++.+ |.+||+|+|++| | +||||+|++.+++.++.+.+.+. ||++ |+||||+|
T Consensus 18 ~~TPl~~---~~~l~~~~---------g~~l~~K~E~~n-p-tGS~K~R~a~~~i~~a~~~~~~~gvv~a--SsGN~g~a 81 (322)
T PRK07476 18 RRTPLVA---SASLSARA---------GVPVWLKLETLQ-P-TGSFKLRGATNALLSLSAQERARGVVTA--STGNHGRA 81 (322)
T ss_pred CCCCcee---chhhHHhh---------CCeEEEEEccCC-C-CCCchHHHHHHHHHhhhhhhhCCeEEEE--CCChHHHH
Confidence 8999999 88887654 468999999998 7 89999999999999998888765 8886 67999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+.+|++|+||||...++. +..+++.||+ |+.++.. +++..+. +.++
T Consensus 82 lA~~a~~~G~~~~i~vp~~~~~~---k~~~~~~~GA~V~~~~~~-~~~~~~~----a~~~-------------------- 133 (322)
T PRK07476 82 LAYAARALGIRATICMSRLVPAN---KVDAIRALGAEVRIVGRS-QDDAQAE----VERL-------------------- 133 (322)
T ss_pred HHHHHHHhCCCEEEEeCCCCCHH---HHHHHHHcCCEEEEECCC-HHHHHHH----HHHH--------------------
Confidence 99999999999999999988753 4567899998 9998863 4432221 1111
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
.+..+.+|+.|. .||....|+.+++.||++|+ +.+|+||+|+||||+++|++.+|+.
T Consensus 134 -----------------~~~~g~~~~~~~--~n~~~~~g~~t~~~Ei~~Q~----~~~d~iv~~vG~GG~~~Gv~~~~k~ 190 (322)
T PRK07476 134 -----------------VREEGLTMVPPF--DDPRIIAGQGTIGLEILEAL----PDVATVLVPLSGGGLASGVAAAVKA 190 (322)
T ss_pred -----------------HHhcCCEEeCCC--CCcceeechhHHHHHHHHhC----cCCCEEEEEcChHHHHHHHHHHHHH
Confidence 111223454443 47888899999999999996 3689999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHHH------HHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKNL------ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~l------~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~ 390 (444)
++++++|+|||+++....+.+...+. ...+++.++.+ ... .....+.+++...+..+.|+|+|++++++
T Consensus 191 ~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~---~~~--~~~~~~~~~~~~~d~~~~V~d~e~~~a~~ 265 (322)
T PRK07476 191 IRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGG---IGL--DNRYTFAMCRALLDDVVLLDEAEIAAGIR 265 (322)
T ss_pred hCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCcccccccc---ccC--CcHHHHHHHHhcCCeEEEECHHHHHHHHH
Confidence 99999999999987654332211110 01111111100 000 01122344556778899999999999999
Q ss_pred HHHHHhCCcccccccHHHHHHHHHHhhhcCCC-CCeEEEEEcCCCccchhhh
Q 013383 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQ-DADVVMLHTGGTLGMFGLA 441 (444)
Q Consensus 391 ~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~-g~~Vv~i~TGG~~~l~~~~ 441 (444)
+|++++||++||+ +++++++++.. .+.. +++||+||||||.+...+.
T Consensus 266 ~l~~~~gi~ve~a-~a~~laal~~~---~~~~~~~~Vvvi~tGg~~~~~~~~ 313 (322)
T PRK07476 266 HAYREERLVVEGA-GAVGIAALLAG---KIAARDGPIVVVVSGANIDMELHR 313 (322)
T ss_pred HHHHhcCceEeCh-hHHHHHHHHhC---CcccCCCcEEEEECCCCCCHHHHH
Confidence 9999999999997 68899998842 2233 4899999999999876543
No 19
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=2.3e-44 Score=380.38 Aligned_cols=288 Identities=15% Similarity=0.123 Sum_probs=222.2
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHH-hcCCCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~-~~g~~~Vvt~G~s~GNhg~a 157 (444)
++|||++ ++++++.+ |++||+|+|++| | +||||+|++.+.+..+. +.+.++||++ |+||||++
T Consensus 36 ~~TPL~~---~~~Ls~~~---------g~~IylK~E~lq-p-tGSfK~RGA~n~i~~l~~~~~~~GVV~a--SaGNha~g 99 (521)
T PRK12483 36 RETPLQR---APNLSARL---------GNQVLLKREDLQ-P-VFSFKIRGAYNKMARLPAEQLARGVITA--SAGNHAQG 99 (521)
T ss_pred CCCCeeE---chhhhHhh---------CCEEEEEEcCCC-C-CCchHHHHHHHHHHHhHHHHhcCcEEEE--CCCHHHHH
Confidence 8999999 88887665 469999999998 6 89999999998887654 4455679987 45999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+.+|++|+||||..+|.. +...++.||| |+.++. .|++..+. |.++
T Consensus 100 vA~aA~~lGi~~~IvmP~~tp~~---Kv~~~r~~GAeVil~g~-~~d~a~~~----A~~l-------------------- 151 (521)
T PRK12483 100 VALAAARLGVKAVIVMPRTTPQL---KVDGVRAHGGEVVLHGE-SFPDALAH----ALKL-------------------- 151 (521)
T ss_pred HHHHHHHhCCCEEEEECCCCCHH---HHHHHHHCCCEEEEECC-CHHHHHHH----HHHH--------------------
Confidence 99999999999999999988764 4456899998 999875 46543221 2211
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
.+..+..|+.|+ .||....|+.|++.||++|+ ++ .||+||+|+||||+++|++.+++.
T Consensus 152 -----------------a~e~g~~~v~pf--dd~~viaGqgTig~EI~eQ~--~~-~~D~VvvpvGgGGliaGia~~~K~ 209 (521)
T PRK12483 152 -----------------AEEEGLTFVPPF--DDPDVIAGQGTVAMEILRQH--PG-PLDAIFVPVGGGGLIAGIAAYVKY 209 (521)
T ss_pred -----------------HHhcCCeeeCCC--CChHHHHHHHHHHHHHHHHh--CC-CCCEEEEecCccHHHHHHHHHHHH
Confidence 111223455544 46888889999999999996 22 599999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHH-H-----HHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKN-L-----ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~-l-----~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~ 390 (444)
++|++||||||+++++....+...+ . ...+++.+ .+..++...+.+++++.++.+.|+|+|+.++++
T Consensus 210 ~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGi-------av~~~g~~~~~~~~~~vd~vv~Vse~ei~~ai~ 282 (521)
T PRK12483 210 VRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGV-------AVAQIGEHTFELCRHYVDEVVTVSTDELCAAIK 282 (521)
T ss_pred hCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceecee-------ccCCCCHHHHHHHHHhCCEEEEECHHHHHHHHH
Confidence 9999999999999876543221110 0 01122221 122233455666788899999999999999999
Q ss_pred HHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhh
Q 013383 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGL 440 (444)
Q Consensus 391 ~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~ 440 (444)
++++++|+++||+ +|+++|+++++.++...++++||+|+||||+++..+
T Consensus 283 ~l~~~~~i~vEpa-gAaalAal~~~~~~~~~~g~~VV~IlsGgNid~~~l 331 (521)
T PRK12483 283 DIYDDTRSITEPA-GALAVAGIKKYAEREGIEGQTLVAIDSGANVNFDRL 331 (521)
T ss_pred HHHHhCCcEEeHH-HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHHHH
Confidence 9999999999998 789999999876543225889999999999987654
No 20
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=4.3e-44 Score=378.07 Aligned_cols=288 Identities=16% Similarity=0.129 Sum_probs=224.9
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHH-HhcCCCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL-EDHIVTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a-~~~g~~~Vvt~G~s~GNhg~a 157 (444)
++|||++ ++++++.+ |.+||+||||+| | +||||+|.+.+.+..+ .+.+.++||++ |+||||++
T Consensus 16 ~~TPL~~---~~~Ls~~~---------g~~i~lK~E~lq-p-tgSfK~RgA~n~i~~l~~~~~~~gVV~a--SaGNha~~ 79 (499)
T TIGR01124 16 QETPLQK---AAKLSERL---------GNRILIKREDLQ-P-VFSFKLRGAYNKMAQLSPEQKARGVIAA--SAGNHAQG 79 (499)
T ss_pred CCCCeee---hHHHHHHh---------CCEEEEEecCCC-C-CCCCHHHHHHHHHHHhhHHhcCCEEEEE--CCCHHHHH
Confidence 8999999 88888765 469999999998 7 8999999999988775 55567889986 57999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+++|++|+||||..+|.. +...++.||| |+.++. .|++..+. |.++
T Consensus 80 vA~aa~~~Gi~~~IvmP~~tp~~---Kv~~~r~~GA~Vvl~g~-~~d~a~~~----a~~l-------------------- 131 (499)
T TIGR01124 80 VAFSAARLGLKALIVMPETTPDI---KVDAVRGFGGEVVLHGA-NFDDAKAK----AIEL-------------------- 131 (499)
T ss_pred HHHHHHHcCCCEEEEECCCCCHH---HHHHHHhCCCEEEEeCc-CHHHHHHH----HHHH--------------------
Confidence 99999999999999999988754 4456899998 998875 45532211 2211
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
.+..+..|+.|+ .||....|+.+++.||++|+ + ..+|+||+|+|||||++|++.+++.
T Consensus 132 -----------------a~~~g~~~i~p~--~~~~~i~G~gtig~EI~~q~--~-~~~D~vvvpvGgGGliaGia~~lk~ 189 (499)
T TIGR01124 132 -----------------SQEKGLTFIHPF--DDPLVIAGQGTLALEILRQV--A-NPLDAVFVPVGGGGLAAGVAALIKQ 189 (499)
T ss_pred -----------------HHhcCCEeeCCC--CChHHHHhhHHHHHHHHHhC--C-CCCCEEEEccCccHHHHHHHHHHHH
Confidence 122334565555 46888889999999999996 2 2699999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHHH------HHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKNL------ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~l------~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~ 390 (444)
++|.++|||||+++++....+...+. +..+++.+ .+..++..++.+++++.++.+.|+|+|+.+|++
T Consensus 190 ~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgi-------av~~~g~~~~~~~~~~vd~vv~V~d~ei~~ai~ 262 (499)
T TIGR01124 190 LMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGV-------AVKRVGDETFRLCQQYLDDIVTVDTDEVCAAIK 262 (499)
T ss_pred hCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcc-------cCCCccHHHHHHHHHhCCEEEEECHHHHHHHHH
Confidence 99999999999998865433221110 01111211 222334456777888999999999999999999
Q ss_pred HHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhh
Q 013383 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGL 440 (444)
Q Consensus 391 ~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~ 440 (444)
.+++++|+++||+ +|+++|+++++.++...++++||+|+||||.++.-+
T Consensus 263 ~l~~~~gii~Epa-gA~~lAal~~~~~~~~~~~~~vv~i~sG~n~~~~~l 311 (499)
T TIGR01124 263 DLFEDTRAVAEPA-GALALAGLKKYVALHGIRGQTLVAILSGANMNFHRL 311 (499)
T ss_pred HHHHhcCcEEech-HHHHHHHHHHhhhhcCCCCCeEEEEECCCCCCHHHH
Confidence 9999999999998 799999999986543225889999999999987544
No 21
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-45 Score=351.27 Aligned_cols=341 Identities=16% Similarity=0.162 Sum_probs=258.8
Q ss_pred eeecccchhhHHHHHHh--hhhcccCCC----ccccccccccccccccCCCCCccccccccccccCCCccccCCCCeEEE
Q 013383 38 ICNVRMSGEELLSRLLD--RKWALTSPD----SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYV 111 (444)
Q Consensus 38 ~~~~~~~~e~~~~~l~~--~~w~~~~~~----~~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~v 111 (444)
.--.++-||+||++|.+ ..|.....| +++..+...| +|+||||+. ++||++.+ |++||+
T Consensus 11 ~fGG~yVpE~Lmpal~eLe~ay~~~~~D~~F~~el~~~l~~Y---~GRptpLy~---a~~Lt~~~---------gakiyL 75 (396)
T COG0133 11 EFGGQYVPETLMPALEELEKAYEKAKNDPEFQAELDYLLKDY---AGRPTPLYF---AERLTEHL---------GAKIYL 75 (396)
T ss_pred ccCCEechHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCChhHH---HHHHHHhh---------CceEEE
Confidence 33457889999999998 778766555 4455555555 899999999 99999876 579999
Q ss_pred EeCCCCCCCCcchhhHHHHhhHHH---HHhcCCCeEEE-eCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHH
Q 013383 112 VRDDLLHPLVNGNKARKMDALLPL---LEDHIVTDLVT-CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLI 187 (444)
Q Consensus 112 KrEdl~~p~~ggnK~Rkl~~~l~~---a~~~g~~~Vvt-~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~ 187 (444)
||||||| +|+ +|+++.|.+ |+++|+++||+ +|+.| ||+|+|.+||++|++|+|||..++.+++..|+.+
T Consensus 76 KREDL~H--tGA---HKiNN~lGQ~LLAkrMGK~riIAETGAGQ--HGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfR 148 (396)
T COG0133 76 KREDLNH--TGA---HKINNALGQALLAKRMGKTRIIAETGAGQ--HGVATATAAALFGLECVIYMGAEDVERQALNVFR 148 (396)
T ss_pred ehhhhcc--cch---hhHHHHHHHHHHHHHhCCceEEeecCCCc--ccHHHHHHHHHhCCceEEEecchhhhhcccchhh
Confidence 9999998 678 667777776 78999999997 78866 9999999999999999999999998889899999
Q ss_pred HHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCC
Q 013383 188 STIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG 266 (444)
Q Consensus 188 ~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g 266 (444)
|+++|| |+.|..++.+.+|+++++ +++|+.++..++|. +. +..+|+||
T Consensus 149 M~LlGA~V~pV~sGs~TLKDA~neA----------lRdWvtn~~~ThY~--------------iG--sa~GPHPy----- 197 (396)
T COG0133 149 MRLLGAEVVPVTSGSGTLKDAINEA----------LRDWVTNVEDTHYL--------------IG--SAAGPHPY----- 197 (396)
T ss_pred hhhcCceEEEeccCCchHHHHHHHH----------HHHHHhccccceEE--------------Ee--eccCCCCc-----
Confidence 999998 999999888888888765 57999999888875 33 45678888
Q ss_pred CccHHHHHHHHHHH-HHHHHhHH--cCCCCcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCCh-h------HHH
Q 013383 267 AGDAVALLGVFRLL-QYLSQDHL--LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTI-D------GYK 336 (444)
Q Consensus 267 ~~np~~~~G~~t~~-~Ei~~q~~--~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~-~------~~~ 336 (444)
|..++.|++++ .|..+|+. .| ..||.||.|||+|++++|++..|. -.+++++||||+.+.- . .+.
T Consensus 198 ---P~iVRdFQ~vIG~E~k~Qile~eg-rlPD~vvACVGGGSNAiG~F~~Fi-~d~~V~LiGvEaaG~Gi~t~~HaAtl~ 272 (396)
T COG0133 198 ---PTIVRDFQSVIGEEAKAQILEKEG-RLPDAVVACVGGGSNAIGIFHPFI-DDESVRLIGVEAAGKGIETGKHAATLT 272 (396)
T ss_pred ---hHHHHHHHHHHhHHHHHHHHHHhC-CCCCeEEEeccCCcchhhhccccc-CCCCceEEEeccCcCccCCCccceeec
Confidence 89999999986 99999973 45 589999999999999999999996 3478999999997631 1 111
Q ss_pred HHHHHHHHHHH--------------HHhccccccCCcccccccceeeeecc-cCCeEEecChHHHHHHHHHHHHhCCccc
Q 013383 337 QQEKNLISEFK--------------RLFGFLLKKSSLNEVDGEIVHWVERC-RPRKFGNVFEGEIEACHRIAQLTGILVD 401 (444)
Q Consensus 337 ~~~~~l~~~~~--------------~~i~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~d~e~~~a~~~la~~eGI~vE 401 (444)
....++.++.. .++.. +...+.++++. .|+.+. ...-+.++|+|+++|.+.|++.|||.--
T Consensus 273 ~G~~GvlhG~~tyllQd~~GQi~e~hSISA---GLDYPgVGPeh-a~l~~~gRa~y~~itD~EAl~af~~L~r~EGIIPA 348 (396)
T COG0133 273 AGRPGVLHGMKTYLLQDEDGQILESHSISA---GLDYPGVGPEH-AYLKDIGRAEYVSITDEEALEAFQLLSRLEGIIPA 348 (396)
T ss_pred CCCceeeecccceeeEcCCCCEeeeeeecc---CCCCCCCChhH-HHHHhcCceeEEecChHHHHHHHHHHHHhcCcchh
Confidence 11011111111 01111 22233333332 233332 2223567899999999999999999866
Q ss_pred ccccHHHHHHHHHHhhhcCCCCCeEEEEEcC-CCccchhhhh
Q 013383 402 PVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFGLAQ 442 (444)
Q Consensus 402 P~ysaaa~aal~~l~~~~~~~g~~Vv~i~TG-G~~~l~~~~~ 442 (444)
.- |+-|+|.+.++.++ .++++.||+-+|| |-.+++...+
T Consensus 349 LE-SsHAlA~a~kla~~-~~~~~~ivvnlSGRGDKDv~tv~~ 388 (396)
T COG0133 349 LE-SSHALAYALKLAPK-LPKDEIIVVNLSGRGDKDVFTVAK 388 (396)
T ss_pred hh-hHHHHHHHHHhchh-cCCCcEEEEEccCCCcccHHHHHH
Confidence 54 57899999988754 3456667777888 7677765443
No 22
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=1e-43 Score=365.17 Aligned_cols=346 Identities=16% Similarity=0.117 Sum_probs=239.3
Q ss_pred ceeecccchhhHHHHHHh--hhhcccCCC----ccccccccccccccccCCCCCccccccccccccCCCccccCCCCeEE
Q 013383 37 GICNVRMSGEELLSRLLD--RKWALTSPD----SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFY 110 (444)
Q Consensus 37 ~~~~~~~~~e~~~~~l~~--~~w~~~~~~----~~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~ 110 (444)
|---.++-||+||++|.+ ..|.....| +++..+...+ +|++|||++ ++++++.+|. ....|++||
T Consensus 20 g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~---vGr~TPL~~---~~~Ls~~~g~---~~~~g~~Iy 90 (410)
T PLN02618 20 GKFGGKYVPETLMTALSELEAAFNALATDPEFQEELAGILKDY---VGRETPLYF---AERLTEHYKR---ADGEGPEIY 90 (410)
T ss_pred cCcCCEeCCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHh---cCCCCceeE---hhhHHHHhcc---ccCCCCEEE
Confidence 444567899999999998 677655444 4455555544 788999999 9999987740 000157999
Q ss_pred EEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHh
Q 013383 111 VVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTI 190 (444)
Q Consensus 111 vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~ 190 (444)
+||||+| | +||||+|.+.+.+..|+++|+++||+.. ++||||+|+|++|+++|++|+||||..+.+.+..|+.+|++
T Consensus 91 lK~E~ln-p-tGS~K~R~a~~~~l~A~~~g~~~vIaes-gaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~ 167 (410)
T PLN02618 91 LKREDLN-H-TGAHKINNAVAQALLAKRLGKKRIIAET-GAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRL 167 (410)
T ss_pred EEeCCCC-C-ccchHHHHHHHHHHHHHHcCCCEEEEEc-CcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHH
Confidence 9999999 5 7999999988888888999999888643 35999999999999999999999998655545568888999
Q ss_pred CCc-EEEeCCc--chhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCC-
Q 013383 191 YGK-VTYVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG- 266 (444)
Q Consensus 191 ~Ga-V~~v~~~--~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g- 266 (444)
||| |+.|+.+ .+.+ ...++ + +.|+. +.....|++...
T Consensus 168 lGA~Vi~v~~g~~~~~d--A~~ea-~---------~~~~~---------------------------~~~~~~yi~gs~~ 208 (410)
T PLN02618 168 LGAEVRPVHSGTATLKD--ATSEA-I---------RDWVT---------------------------NVETTHYILGSVA 208 (410)
T ss_pred CCCEEEEEeCCCCCHHH--HHHHH-H---------HHHHh---------------------------ccCCCEEEecCcC
Confidence 998 9999642 2332 21111 1 11221 001123332111
Q ss_pred CccH---HHHHHHHHHHHHHHHhH--HcCCCCcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCCh-------hH
Q 013383 267 AGDA---VALLGVFRLLQYLSQDH--LLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTI-------DG 334 (444)
Q Consensus 267 ~~np---~~~~G~~t~~~Ei~~q~--~~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~-------~~ 334 (444)
+.+| ...+++.+++.||.+|+ ..+ ..||+||+||||||+++|++.+|+ .+++++|||||+++.. +.
T Consensus 209 gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g-~~pD~VV~~VGgGg~~~Gi~~~f~-~~~~v~ligVEa~G~~~~~~~~~a~ 286 (410)
T PLN02618 209 GPHPYPMMVRDFHSVIGKETRRQAMEKWG-GKPDVLVACVGGGSNAMGLFHEFI-DDEDVRLIGVEAAGFGLDSGKHAAT 286 (410)
T ss_pred CCCCCHHHHHHhhHHHHHHHHHHHHHHhC-CCCCEEEEEeCchHHHHHHHHHHH-hCCCceEEEEEeCCCcccccccccc
Confidence 1122 23467778899999887 234 379999999999999999999997 4789999999998851 11
Q ss_pred HHHHHHHHHHHHH--------------HHhccccccCCcccccccceeeeec-ccCCeEEecChHHHHHHHHHHHHhCCc
Q 013383 335 YKQQEKNLISEFK--------------RLFGFLLKKSSLNEVDGEIVHWVER-CRPRKFGNVFEGEIEACHRIAQLTGIL 399 (444)
Q Consensus 335 ~~~~~~~l~~~~~--------------~~i~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~v~d~e~~~a~~~la~~eGI~ 399 (444)
+........++.. .++..+ +..+.+++. +.++++ ..+..+.|+|+|+++++++|+++|||+
T Consensus 287 l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~g---l~~pgvgp~-~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi 362 (410)
T PLN02618 287 LTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAG---LDYPGVGPE-HSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGII 362 (410)
T ss_pred hhcCCcceeccccccccccccCCCCCCcchhhh---hcCCCCcHH-HHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCce
Confidence 1111000000000 011111 111122222 233433 456678899999999999999999999
Q ss_pred ccccccHHHHHHHHHHhhhcCCCCCeEEEEEcC-CCccchhhh
Q 013383 400 VDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFGLA 441 (444)
Q Consensus 400 vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TG-G~~~l~~~~ 441 (444)
+++. |+.++++++++.++ +.++++||+++|| |..++....
T Consensus 363 ~~~s-Sa~a~a~a~~~a~~-l~~~~~iVv~lsgrG~Kd~~~v~ 403 (410)
T PLN02618 363 PALE-TSHALAYLEKLCPT-LPDGTKVVVNCSGRGDKDVNTAI 403 (410)
T ss_pred Echh-HHHHHHHHHHHhHh-cCCCCEEEEEeCCCCcCCHHHHH
Confidence 9997 78999999988754 6678899999999 666655443
No 23
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=1.5e-43 Score=365.58 Aligned_cols=294 Identities=18% Similarity=0.136 Sum_probs=222.6
Q ss_pred ccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEe
Q 013383 68 QIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTC 147 (444)
Q Consensus 68 ~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~ 147 (444)
.+++.+ |+|||++ ++++++.+|. .+||+|+|++| | +||||||++.+++..|++.|.++||+.
T Consensus 72 ~vslge-----G~TPL~~---~~~l~~~~G~--------~~l~~K~E~~n-P-tGSfKdRga~~~i~~a~~~g~~~vv~a 133 (394)
T PRK08197 72 IVSLGE-----GMTPLLP---LPRLGKALGI--------GRLWVKDEGLN-P-TGSFKARGLAVGVSRAKELGVKHLAMP 133 (394)
T ss_pred CCccCc-----CCCCceE---hHHHHHHhCC--------CcEEEEeCCCC-C-CcCcHHhHHHHHHHHHHHcCCCEEEEe
Confidence 356655 9999999 8888876642 58999999998 7 899999999999999999999999975
Q ss_pred CcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccch
Q 013383 148 GGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWC 226 (444)
Q Consensus 148 G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~ 226 (444)
|+||||+|+|++|+++|++|+||||...++ .+..+++.||| |+.++. .+++..+. +++++
T Consensus 134 --SsGN~g~alA~~aa~~G~~~~v~vp~~~~~---~k~~~~~~~GA~Vi~v~~-~~~~~~~~----a~~~~--------- 194 (394)
T PRK08197 134 --TNGNAGAAWAAYAARAGIRATIFMPADAPE---ITRLECALAGAELYLVDG-LISDAGKI----VAEAV--------- 194 (394)
T ss_pred --CCcHHHHHHHHHHHHcCCcEEEEEcCCCCH---HHHHHHHHcCCEEEEECC-CHHHHHHH----HHHHH---------
Confidence 679999999999999999999999988764 35667899998 999986 35432222 11111
Q ss_pred hhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhh
Q 013383 227 NEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTT 306 (444)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt 306 (444)
+. ...| ...+..||...+|+.++++||++|+ ++..||+||+|+|+|++
T Consensus 195 ----------------------------~~-~g~~-~~~~~~np~~ieG~~t~a~Ei~eQl--~~~~pD~vvvpvG~Gg~ 242 (394)
T PRK08197 195 ----------------------------AE-YGWF-DVSTLKEPYRIEGKKTMGLELAEQL--GWRLPDVILYPTGGGVG 242 (394)
T ss_pred ----------------------------Hh-cCcc-cccCCCCccchhcHHHHHHHHHHHc--CCCCCCEEEEeCCChHH
Confidence 11 1233 2334467888899999999999996 43359999999999999
Q ss_pred HHHHHHHHHhc-------CCCCeEEEEeccCChhHHHHHHHHH--------HHHHHHHhccccccCCcccccccceeeee
Q 013383 307 AVGLGLGAICL-------GLPWEVTAIALVDTIDGYKQQEKNL--------ISEFKRLFGFLLKKSSLNEVDGEIVHWVE 371 (444)
Q Consensus 307 ~aGl~~~~~~~-------g~~~~vigV~~~~~~~~~~~~~~~l--------~~~~~~~i~~~~~~~~~~~~~~~~~~l~~ 371 (444)
++|++++|+++ ++.+||++||++++...+.....+. ...+++.+.. +.... ....+..++
T Consensus 243 ~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~~---~~~~~--~~~~~~~~~ 317 (394)
T PRK08197 243 LIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIRV---PKALG--DFLVLDAVR 317 (394)
T ss_pred HHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhhC---CCCCC--HHHHHHHHH
Confidence 99999999986 4789999999988754333211110 0111111110 10000 012234455
Q ss_pred cccCCeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCCcc
Q 013383 372 RCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTLG 436 (444)
Q Consensus 372 ~~~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~~~ 436 (444)
++.+..+.|+|+|+++++++|++++||++||+ +|+++++++++.++ .+.++++||+|+||++.-
T Consensus 318 ~~~g~~v~V~d~e~~~a~~~la~~eGi~veps-saaala~~~~l~~~~~~~~~~~Vv~v~tG~g~k 382 (394)
T PRK08197 318 ETGGCAIAVSDDAILAAQRELAREEGLFACPE-GAATFAAARQLRESGWLKGDERVVLFNTGSGLK 382 (394)
T ss_pred HhCCEEEEeCHHHHHHHHHHHHhcCCceECch-HHHHHHHHHHHHHcCCcCCCCcEEEEeCCCCcC
Confidence 77888999999999999999999999999998 79999999998765 366788999999998753
No 24
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=5.5e-44 Score=363.36 Aligned_cols=295 Identities=15% Similarity=0.128 Sum_probs=217.5
Q ss_pred cccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEE
Q 013383 67 HQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVT 146 (444)
Q Consensus 67 ~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt 146 (444)
+++++.. |+|||++ ++++++.+ |.+||+|+|++| | +||||+|++.+++.+|.++|.++||+
T Consensus 20 ~~~~l~~-----G~TPL~~---~~~l~~~~---------g~~l~~K~E~~n-p-tGS~KdR~a~~~i~~a~~~g~~~vV~ 80 (351)
T PRK06352 20 PMISLAE-----GNTPLIP---LPNLSKEL---------GVTLYGKYEGLN-P-TGSFKDRGMVMAVAKAKEEGAEAVIC 80 (351)
T ss_pred CccccCC-----CCCCeeE---cHhhHHHh---------CCeEEEEecCCC-C-ccChHHHHHHHHHHHHHHCCCCEEEE
Confidence 3566655 9999999 88887655 468999999998 7 89999999999999999999999998
Q ss_pred eCcccchHHHHHHHHHHHhCCeEEEEecCCC-CccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCcc
Q 013383 147 CGGCQSAHATAVAVSCAERGLKSHLLLRGEQ-PQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVV 224 (444)
Q Consensus 147 ~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~-~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~ 224 (444)
+ |+||||+|+|++|+.+|++|+||||+.. +. .+..+++.||+ |+.++.. |++..+. +++++
T Consensus 81 a--SsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~---~k~~~~~a~GA~V~~~~~~-~~~~~~~----a~~~~------- 143 (351)
T PRK06352 81 A--STGNTSAAAAAYATRAGLKAYIVIPEGKVAL---GKLAQAVMYGADIISIQGN-FDEALKS----VRELA------- 143 (351)
T ss_pred E--CCcHHHHHHHHHHHHcCCcEEEEEeCCCCcH---HHHHHHHhcCCEEEEECCC-HHHHHHH----HHHHH-------
Confidence 6 6799999999999999999999999863 43 34557899998 9999863 5543222 12111
Q ss_pred chhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCCh
Q 013383 225 WCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTG 304 (444)
Q Consensus 225 w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtG 304 (444)
+. ...+.+ +..||...+|+.++++||++|+ + ..||+||+|+|||
T Consensus 144 ------------------------------~~-~~~~~~--~~~n~~~~~G~~t~~~EI~~Q~--~-~~~D~vvv~vG~G 187 (351)
T PRK06352 144 ------------------------------ET-EAVTLV--NSVNPYRLEGQKTAAFEICEQL--G-SAPDVLAIPVGNA 187 (351)
T ss_pred ------------------------------Hh-cCcccc--cCCCccceeeHHHHHHHHHHHc--C-CCCCEEEEECCch
Confidence 11 112222 2357888899999999999996 3 3699999999999
Q ss_pred hhHHHHHHHHHhcCCC-----CeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEE
Q 013383 305 TTAVGLGLGAICLGLP-----WEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFG 379 (444)
Q Consensus 305 gt~aGl~~~~~~~g~~-----~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 379 (444)
||++|++++|+++++. ++|||||+++++.............+++.++.+ .+..+. .....++++.+..+.
T Consensus 188 G~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~-~~~~~~----~~~~~~d~~~g~~~~ 262 (351)
T PRK06352 188 GNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIG-NPASWG----LAEAARDESGGYIHS 262 (351)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeC-CCCcHH----HHHHHHHHhCCEEEE
Confidence 9999999999988765 899999998865322111000011111111100 000000 001123344555899
Q ss_pred ecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcC-CCccchh
Q 013383 380 NVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTG-GTLGMFG 439 (444)
Q Consensus 380 v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TG-G~~~l~~ 439 (444)
|+|+++++++++|++++||++||+ +|+++|+++++.++ .+.++++||+|+|| |+..+..
T Consensus 263 V~d~e~~~a~r~la~~eGi~veps-saaalAa~~~~~~~~~~~~~~~Vv~v~tg~G~~~~~~ 323 (351)
T PRK06352 263 VTDDEIVNAYKKIAAQDGVFIEPG-SAASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDT 323 (351)
T ss_pred ECHHHHHHHHHHHHhhcCceEchh-HHHHHHHHHHHHHcCCCCCCCcEEEEeCCCCcCChHH
Confidence 999999999999999999999998 79999999988764 35568899999999 7766543
No 25
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=9.4e-44 Score=354.46 Aligned_cols=285 Identities=13% Similarity=0.077 Sum_probs=215.5
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcC-CCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI-VTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g-~~~Vvt~G~s~GNhg~a 157 (444)
|+|||++ ++++++.+ |.+||+|+|++| | +||||||.+.+++..+++.+ .++||++ |+||||.|
T Consensus 16 g~TPl~~---~~~l~~~~---------g~~i~~K~E~~n-p-tgS~Kdr~a~~~l~~~~~~~~~~~iv~~--ssGN~g~a 79 (304)
T cd01562 16 RRTPLLT---SPTLSELL---------GAEVYLKCENLQ-K-TGSFKIRGAYNKLLSLSEEERAKGVVAA--SAGNHAQG 79 (304)
T ss_pred CCCCccc---chhhHHHh---------CCeEEEEeccCC-C-cCCcHHHhHHHHHHhcCHhhcCCcEEEE--CCCHHHHH
Confidence 9999999 99987665 469999999998 6 79999999999999988766 5778886 46999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+.+|++|++|||...+.. +..+++.||+ |+.+++. |+++.+. ++++
T Consensus 80 lA~~a~~~G~~~~ivvp~~~~~~---k~~~l~~~Ga~vi~~~~~-~~~~~~~----a~~l-------------------- 131 (304)
T cd01562 80 VAYAAKLLGIPATIVMPETAPAA---KVDATRAYGAEVVLYGED-FDEAEAK----AREL-------------------- 131 (304)
T ss_pred HHHHHHHcCCCEEEEECCCCCHH---HHHHHHHcCCEEEEeCCC-HHHHHHH----HHHH--------------------
Confidence 99999999999999999877643 4567899998 9999874 5543222 1111
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
.+..+.+|+. +..||....|+.++++||++|+ + .||+||+|+|||||++|++.+++.
T Consensus 132 -----------------a~~~~~~~~~--~~~n~~~~~g~~~~~~Ei~~q~--~--~~d~vv~~vGtGgt~~Gi~~~lk~ 188 (304)
T cd01562 132 -----------------AEEEGLTFIH--PFDDPDVIAGQGTIGLEILEQV--P--DLDAVFVPVGGGGLIAGIATAVKA 188 (304)
T ss_pred -----------------HHhcCCEEeC--CCCCcchhccHHHHHHHHHHhc--C--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 1222233433 3456778889999999999996 2 499999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHHH--HHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKNL--ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~l--~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~ 394 (444)
+++.+||+||++.+++..+.....+. ......++..++ ....+....+.+.+++.+..|.|+|++++++++++++
T Consensus 189 ~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~ 265 (304)
T cd01562 189 LSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGL---AVKRPGELTFEIIRKLVDDVVTVSEDEIAAAMLLLFE 265 (304)
T ss_pred hCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccc---cCCCchHHHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 99999999999988754332211000 000000111110 0001111223346677889999999999999999999
Q ss_pred HhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCcc
Q 013383 395 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLG 436 (444)
Q Consensus 395 ~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~ 436 (444)
++||++||+ +|+++++++++.++ . ++++||+||||||.+
T Consensus 266 ~eGi~~~ps-s~~a~a~~~~~~~~-~-~~~~vv~i~tGG~~~ 304 (304)
T cd01562 266 REKLVAEPA-GALALAALLSGKLD-L-KGKKVVVVLSGGNID 304 (304)
T ss_pred HcCceEchh-HHHHHHHHHhCccc-c-CCCeEEEEecCCCCC
Confidence 999999998 78999999998654 3 688999999999963
No 26
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.6e-43 Score=374.87 Aligned_cols=288 Identities=16% Similarity=0.134 Sum_probs=222.7
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHH-hcCCCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~-~~g~~~Vvt~G~s~GNhg~a 157 (444)
++|||++ ++++++.+ |.+||+||||+| | +||||+|.+.+.+..+. +.+.++||++ |+||||++
T Consensus 19 ~~TPL~~---~~~Ls~~~---------g~~i~lK~E~lq-p-tgSfK~RgA~n~i~~l~~~~~~~gvV~a--SaGNha~a 82 (504)
T PRK09224 19 QETPLEK---APKLSARL---------GNQVLLKREDLQ-P-VFSFKLRGAYNKMAQLTEEQLARGVITA--SAGNHAQG 82 (504)
T ss_pred CCCCcee---hhHhHHHh---------CCEEEEEecCCC-C-CCCChHHHHHHHHHhhhHHhcCCEEEEE--CcCHHHHH
Confidence 8999999 88887665 469999999998 7 89999999999887754 4567889987 46999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+++|++|+||||..+|.. +...++.||+ |+.++. .|++..+. |+++
T Consensus 83 vA~aa~~lGi~~~IvmP~~tp~~---K~~~~r~~GA~Vi~~g~-~~~~a~~~----a~~l-------------------- 134 (504)
T PRK09224 83 VALSAARLGIKAVIVMPVTTPDI---KVDAVRAFGGEVVLHGD-SFDEAYAH----AIEL-------------------- 134 (504)
T ss_pred HHHHHHHcCCCEEEEECCCCCHH---HHHHHHhCCCEEEEECC-CHHHHHHH----HHHH--------------------
Confidence 99999999999999999987754 4456799998 999875 46542221 2211
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
.+..+..|+.|+ .||....|+.|++.||++|+ + ..||+||+|+||||+++|++.+++.
T Consensus 135 -----------------~~~~g~~~v~~f--~~~~~i~G~gTi~~EI~~q~--~-~~~D~vvvpvGgGGliaGia~~lk~ 192 (504)
T PRK09224 135 -----------------AEEEGLTFIHPF--DDPDVIAGQGTIAMEILQQH--P-HPLDAVFVPVGGGGLIAGVAAYIKQ 192 (504)
T ss_pred -----------------HHhcCCEEeCCC--CCcHHHHhHHHHHHHHHHhc--c-CCCCEEEEecChhHHHHHHHHHHHH
Confidence 122233455544 46888889999999999996 2 2499999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHH-H-----HHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKN-L-----ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~-l-----~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~ 390 (444)
++|.++|+|||+++++..+.+...+ . ...+++.+ .+..++...+.+++++.++.+.|+|+|+.++++
T Consensus 193 ~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~-------av~~~g~~~~~~~~~~vd~~v~Vsd~ei~~a~~ 265 (504)
T PRK09224 193 LRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGV-------AVKRIGEETFRLCQEYVDDVITVDTDEICAAIK 265 (504)
T ss_pred hCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcc-------cCCCccHHHHHHHHhcCCeEEEECHHHHHHHHH
Confidence 9999999999999876544322111 0 01111211 122233455666788999999999999999999
Q ss_pred HHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhh
Q 013383 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGL 440 (444)
Q Consensus 391 ~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~ 440 (444)
++++++|+++||+ +|+++|+++++.++...++++||+||||||+++.-+
T Consensus 266 ~l~~~~~~~~epa-gA~~lAal~~~~~~~~~~g~~vv~i~sG~n~~~~~l 314 (504)
T PRK09224 266 DVFEDTRSIAEPA-GALALAGLKKYVAQHGIEGETLVAILSGANMNFDRL 314 (504)
T ss_pred HHHHhcCeEEcHH-HHHHHHHHHHhhhhcCCCCCeEEEEECCCCCCHHHH
Confidence 9999999999998 799999999886543224889999999999887543
No 27
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=1.2e-43 Score=367.60 Aligned_cols=288 Identities=13% Similarity=0.071 Sum_probs=214.5
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcC-CCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI-VTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g-~~~Vvt~G~s~GNhg~a 157 (444)
++|||++ ++++++.+ |.+||+|+|++| | +||||+|++.+++..+.+.+ .++||++ |+||||+|
T Consensus 24 ~~TPl~~---~~~ls~~~---------g~~v~~K~E~~n-p-tGSfK~Rga~~~i~~~~~~~~~~gvv~a--SsGN~g~a 87 (406)
T PRK06382 24 NRTPLIH---STTFGDEY---------GGDIYFKLENFQ-K-TGSFKSRGAVFKFSKLSEDELRNGVITA--SAGNHAQG 87 (406)
T ss_pred CCCCeeE---hhhhHHHh---------CCEEEEEecCCC-C-CCCCHHHHHHHHHHhcchhccCCeEEEE--CCCHHHHH
Confidence 8999999 88887665 469999999998 7 89999999999998766544 3568886 45999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+.+|++|+||||...|.. +...++.||| |+.++. .|++..+. |+++
T Consensus 88 ~A~aa~~~G~~~~ivmp~~~~~~---k~~~~~~~GA~Vv~~~~-~~~~a~~~----a~~l-------------------- 139 (406)
T PRK06382 88 VAYAASINGIDAKIVMPEYTIPQ---KVNAVEAYGAHVILTGR-DYDEAHRY----ADKI-------------------- 139 (406)
T ss_pred HHHHHHHcCCCEEEEEcCCCHHH---HHHHHHHcCCEEEEECC-CHHHHHHH----HHHH--------------------
Confidence 99999999999999999987653 3346799998 988876 35543222 2211
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
.+..+..|+.|+ .||....|+.+++.||++|+ +.||+||+|+||||+++|++.+++.
T Consensus 140 -----------------a~~~~~~~v~~~--~~~~~i~g~~t~~~Ei~eq~----~~~d~vvvpvG~GG~~~Gv~~~~k~ 196 (406)
T PRK06382 140 -----------------AMDENRTFIEAF--NDRWVISGQGTIGLEIMEDL----PDLDQIIVPVGGGGLISGIALAAKH 196 (406)
T ss_pred -----------------HHhcCCEecCcc--CChHHHHHHHHHHHHHHHhc----CCCCEEEEeeChHHHHHHHHHHHHH
Confidence 122233444443 46888889999999999995 3699999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHH-HHH-HHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKN-LIS-EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~-l~~-~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~ 394 (444)
+++.+||+|||+++++....+...+ ... ....++..+ +..+.++...+.+++++.++.+.|+|+|+++++++|++
T Consensus 197 ~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~g---l~~~~~~~~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~ 273 (406)
T PRK06382 197 INPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDG---ISVKYPGDLTFDIAKNYVDDIVTVTEESVSKAIYKLFE 273 (406)
T ss_pred hCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCcccc---ccCCCccHHHHHHHHHcCCEEEEECHHHHHHHHHHHHH
Confidence 9999999999999976533222111 000 000111111 11112222344567788999999999999999999999
Q ss_pred HhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchh
Q 013383 395 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFG 439 (444)
Q Consensus 395 ~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~ 439 (444)
++||++||+ +|+++++++... ...++++||+|+||||.++.-
T Consensus 274 ~~gi~~eps-ga~~laal~~~~--~~~~~~~Vv~i~sGGn~d~~~ 315 (406)
T PRK06382 274 REKIVAEPS-GAVGLAAIMEGK--VDVKGKKVAIVVSGGNINPLL 315 (406)
T ss_pred HcCceechH-HHHHHHHHHhcc--ccCCCCEEEEEeCCCCCCHHH
Confidence 999999997 678888776431 123578999999999988654
No 28
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-43 Score=354.62 Aligned_cols=287 Identities=16% Similarity=0.061 Sum_probs=217.7
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHh-cCCCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLED-HIVTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~-~g~~~Vvt~G~s~GNhg~a 157 (444)
++|||++ ++++++.+ |.+||+|+|++| | +||||+|.+.+.+..+.+ .+.++||+. |+||||+|
T Consensus 19 ~~TPLv~---~~~l~~~~---------g~~i~~K~E~~n-p-tgS~KdR~a~~~~~~l~~~~~~~~vv~a--SsGN~g~a 82 (317)
T PRK06815 19 RVTPLEH---SPLLSQHT---------GCEVYLKCEHLQ-H-TGSFKFRGASNKLRLLNEAQRQQGVITA--SSGNHGQG 82 (317)
T ss_pred CCCCccc---cHhHHHhh---------CCeEEEEecCCC-C-CCCcHHHHHHHHHHhcchhhcCceEEEE--CCChHHHH
Confidence 8999999 88877654 469999999999 7 899999999988876432 344678874 67999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+++|++|+||||...++ .+..+++.||+ |+.++.. |++.... ++++
T Consensus 83 lA~~a~~~G~~~~i~~p~~~~~---~k~~~~~~~GA~V~~~~~~-~~~~~~~----a~~~-------------------- 134 (317)
T PRK06815 83 VALAAKLAGIPVTVYAPEQASA---IKLDAIRALGAEVRLYGGD-ALNAELA----ARRA-------------------- 134 (317)
T ss_pred HHHHHHHhCCCEEEEECCCCCH---HHHHHHHHCCCEEEEECCC-HHHHHHH----HHHH--------------------
Confidence 9999999999999999988754 35567899998 9999863 4432211 1111
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
.+..+..|+.|+ .||....|+.++++||++|+ +.||+||+|+||||+++|++.++++
T Consensus 135 -----------------~~~~~~~~~~~~--~~~~~~~g~~t~a~Ei~~q~----~~~d~vv~~vG~Gg~~~Gi~~~~k~ 191 (317)
T PRK06815 135 -----------------AEQQGKVYISPY--NDPQVIAGQGTIGMELVEQQ----PDLDAVFVAVGGGGLISGIATYLKT 191 (317)
T ss_pred -----------------HHhcCCEEecCC--CChhhhcchhHHHHHHHHhc----CCCCEEEEECcHHHHHHHHHHHHHH
Confidence 112233455554 46777889999999999996 2599999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHH-HH-----HHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKN-LI-----SEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~-l~-----~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~ 390 (444)
+++.++|+|||+++++..+.....+ +. ..+.+.++... .++...+++.+++.++.+.|+|++++++++
T Consensus 192 ~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~------~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~ 265 (317)
T PRK06815 192 LSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGV------EPGAITFPLCQQLIDQKVLVSEEEIKEAMR 265 (317)
T ss_pred hCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCC------cccHHHHHHHHHhCCeEEEECHHHHHHHHH
Confidence 9999999999999876544322111 10 01222221110 011123345667888999999999999999
Q ss_pred HHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhhh
Q 013383 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLA 441 (444)
Q Consensus 391 ~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~~ 441 (444)
+|++++||++||+ +|+++++++++.++ . ++++||+|+||||.+...+.
T Consensus 266 ~la~~~gi~veps-sg~alaa~~~~~~~-~-~~~~vv~i~tG~~~~~~~~~ 313 (317)
T PRK06815 266 LIAETDRWLIEGA-AGVALAAALKLAPR-Y-QGKKVAVVLCGKNIVLEKYL 313 (317)
T ss_pred HHHHhcCCeEecH-HHHHHHHHHhCchh-c-CCCcEEEEECCCCCCHHHHH
Confidence 9999999999998 79999999987654 3 57899999999999876554
No 29
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=1.6e-43 Score=359.62 Aligned_cols=279 Identities=17% Similarity=0.110 Sum_probs=213.3
Q ss_pred cccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeC
Q 013383 69 IKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCG 148 (444)
Q Consensus 69 ~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G 148 (444)
+++.+ |.|||++ + +.+||+|+|++| | +||||||++.+++..|++.|.++||+.
T Consensus 58 ~sl~e-----g~Tpl~~---~----------------~~~l~~K~E~~n-P-tGSfKdRga~~~i~~a~~~g~~~vv~a- 110 (347)
T PRK08329 58 PHLTP-----PITPTVK---R----------------SIKVYFKLDYLQ-P-TGSFKDRGTYVTVAKLKEEGINEVVID- 110 (347)
T ss_pred CcCCC-----CCCcccc---C----------------CCeEEEEeCCCC-C-CcCCHHHHHHHHHHHHHHcCCCEEEEE-
Confidence 56655 9999998 3 247999999998 7 899999999999999999999999986
Q ss_pred cccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchh
Q 013383 149 GCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCN 227 (444)
Q Consensus 149 ~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~ 227 (444)
|+||||+|+|++|+++|++|+||||...+. .+..+++.||| |+.|+.. |++..+. |+++
T Consensus 111 -SsGN~g~alA~~aa~~G~~~~v~vp~~~~~---~k~~~~~~~GA~v~~v~~~-~~~~~~~----a~~l----------- 170 (347)
T PRK08329 111 -SSGNAALSLALYSLSEGIKVHVFVSYNASK---EKISLLSRLGAELHFVEGD-RMEVHEE----AVKF----------- 170 (347)
T ss_pred -CCCcHHHHHHHHHHHcCCcEEEEECCCChH---HHHHHHHHcCCEEEEECCC-HHHHHHH----HHHH-----------
Confidence 579999999999999999999999987654 46678899998 9999863 5432111 1111
Q ss_pred hhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhH
Q 013383 228 EIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTA 307 (444)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~ 307 (444)
.+..+.+|+.+ ..||...+|++++++||++|+ + .||+||+|+|+||++
T Consensus 171 --------------------------~~~~~~~~~~~--~~np~~~eG~~t~~~Ei~eql--~--~pD~vvvpvG~Gg~l 218 (347)
T PRK08329 171 --------------------------SKRNNIPYVSH--WLNPYFLEGTKTIAYEIYEQI--G--VPDYAFVPVGSGTLF 218 (347)
T ss_pred --------------------------HHhcCCeeccC--CCCchhhccchhHHHHHHHHc--C--CCCEEEEeCCcHHHH
Confidence 11222234333 468999999999999999995 3 699999999999999
Q ss_pred HHHHHHHHhcC------CCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEec
Q 013383 308 VGLGLGAICLG------LPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNV 381 (444)
Q Consensus 308 aGl~~~~~~~g------~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 381 (444)
+|++++|+++. +.+||++||+++........ . ....+++.++.+ . +......+.+++++.+..+.|+
T Consensus 219 ~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~-~-~~~t~a~gi~i~---~--~~~~~~~~~~l~~~~g~~~~V~ 291 (347)
T PRK08329 219 LGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRS-K-SENKLADGIAIP---E--PPRKEEMLRALEESNGFCISVG 291 (347)
T ss_pred HHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhcc-C-CCCceeeeEEeC---C--CCCHHHHHHHHHHhCCEEEEEC
Confidence 99999999863 46899999998854322110 0 001111222211 0 0001123456778888899999
Q ss_pred ChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCCc
Q 013383 382 FEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTL 435 (444)
Q Consensus 382 d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~~ 435 (444)
|+|++++++++++ +||++||+ +|+++|+++++.++ .+.++++||++|||++.
T Consensus 292 d~e~~~a~~~l~~-~Gi~veps-sa~a~Aa~~~l~~~g~i~~~~~Vv~~~TG~gl 344 (347)
T PRK08329 292 EEETRAALHWLRR-MGFLVEPT-SAVALAAYWKLLEEGLIEGGSKVLLPLSGSGL 344 (347)
T ss_pred HHHHHHHHHHHHh-cCceECcc-HHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCc
Confidence 9999999999985 89999998 79999999998775 36678999999999864
No 30
>PLN02970 serine racemase
Probab=100.00 E-value=1.8e-43 Score=356.66 Aligned_cols=291 Identities=15% Similarity=0.100 Sum_probs=214.7
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHH-hcCCCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~-~~g~~~Vvt~G~s~GNhg~a 157 (444)
++|||++ ++++++.+ |.+||+|+|++| | +||||||.+.+++..+. +.+.++||++ |+||||+|
T Consensus 26 ~~TPL~~---~~~l~~~~---------g~~i~~K~E~~n-p-tGSfKdRga~~~i~~~~~~~~~~~vv~a--SsGN~g~a 89 (328)
T PLN02970 26 HRTPVLT---SSSLDALA---------GRSLFFKCECFQ-K-GGAFKFRGACNAIFSLSDDQAEKGVVTH--SSGNHAAA 89 (328)
T ss_pred CCCCeee---chhhHHhh---------CCeEEEEecCCC-C-CCCcHHHHHHHHHHHhhHhhcCCeEEEE--CCcHHHHH
Confidence 8999999 88887655 469999999998 7 79999999999998875 4556789876 67999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+.+|++|+||||...++.+ ...++.||+ |+.++.. ++.+.+. |+++
T Consensus 90 lA~~a~~~G~~~~ivvp~~~~~~k---~~~~~~~GA~Vi~~~~~-~~~~~~~----a~~l-------------------- 141 (328)
T PLN02970 90 LALAAKLRGIPAYIVVPKNAPACK---VDAVIRYGGIITWCEPT-VESREAV----AARV-------------------- 141 (328)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHH---HHHHHhcCCEEEEeCCC-HHHHHHH----HHHH--------------------
Confidence 999999999999999999877543 346799998 9999863 4432221 1111
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
.+.. +.|++ .+..||...+|+.++++||++|+ +.||+||+|+|||||++|++.++++
T Consensus 142 -----------------a~~~-g~~~~-~~~~n~~~~~g~~t~g~Ei~~ql----~~~D~vv~~vG~GG~~~Gi~~~lk~ 198 (328)
T PLN02970 142 -----------------QQET-GAVLI-HPYNDGRVISGQGTIALEFLEQV----PELDVIIVPISGGGLISGIALAAKA 198 (328)
T ss_pred -----------------HHhc-CCEEe-CCCCCcchhhehHHHHHHHHHhc----cCCCEEEEeeCchHHHHHHHHHHHh
Confidence 1112 23333 23456778889999999999996 2599999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHH-HHH-HHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKN-LIS-EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~-l~~-~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~ 394 (444)
.++.++|++||+++++..+.+...+ ... .-..++..++ ... ++...+.+.+++.++.+.|+|+|+++++++|++
T Consensus 199 ~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl---~~~-~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~la~ 274 (328)
T PLN02970 199 IKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGL---RAS-LGDLTWPVVRDLVDDVITVDDKEIIEAMKLCYE 274 (328)
T ss_pred cCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccc---cCC-cCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHH
Confidence 9999999999999876543321111 000 0000111110 000 112234445667788999999999999999999
Q ss_pred HhCCcccccccHHHHHHHHHHhhh--cCCC-CCeEEEEEcCCCccchhhh
Q 013383 395 LTGILVDPVYTLAAWEMATLLSDE--KLKQ-DADVVMLHTGGTLGMFGLA 441 (444)
Q Consensus 395 ~eGI~vEP~ysaaa~aal~~l~~~--~~~~-g~~Vv~i~TGG~~~l~~~~ 441 (444)
++|+++||+ +|++++++++...+ .+.+ +++||+|+||||.++..|.
T Consensus 275 ~~gi~ve~s-~aa~laaa~~~~~~~~~~~~~~~~vv~v~~Ggn~~~~~~~ 323 (328)
T PLN02970 275 RLKVVVEPS-GAIGLAAALSDSFRSNPAWKGCKNVGIVLSGGNVDLGVLW 323 (328)
T ss_pred hcCcEEeHH-HHHHHHHHHhCcccccccccCCCeEEEEECCCCCCHHHHH
Confidence 999999997 68999997753322 1222 4799999999999876553
No 31
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=5.5e-43 Score=351.51 Aligned_cols=287 Identities=12% Similarity=0.019 Sum_probs=215.7
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHH-hcCCCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~-~~g~~~Vvt~G~s~GNhg~a 157 (444)
++|||++ ++++++.+ |.+||+|+|++| | +||||+|++.+++..+. +.+.++||+. |+||||+|
T Consensus 18 ~~TPl~~---~~~l~~~~---------g~~l~~K~E~~n-p-tGS~K~R~a~~~i~~~~~~~~~~~vv~a--SsGN~g~a 81 (317)
T TIGR02991 18 EETPLVE---SPSLSELC---------GVPVHLKLEHRQ-T-TGSFKLRGATNAVLSLSDTQRAAGVVAA--STGNHGRA 81 (317)
T ss_pred CCCCcee---chhhHHhh---------CCeEEEEeccCC-C-CCCcHHHHHHHHHHhhhHhccCCeEEEE--CCCHHHHH
Confidence 8999999 88877654 468999999998 7 89999999999988765 4556778865 67999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+++|++|+||||...++. +..+++.||+ |+.++. .|++..+.. +++
T Consensus 82 lA~~a~~~G~~~~v~~p~~~~~~---k~~~~~~~GA~V~~~~~-~~~~~~~~a----~~~-------------------- 133 (317)
T TIGR02991 82 LAYAAAEEGVRATICMSELVPQN---KVDEIRRLGAEVRIVGR-SQDDAQEEV----ERL-------------------- 133 (317)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHH---HHHHHHHcCCEEEEeCC-CHHHHHHHH----HHH--------------------
Confidence 99999999999999999887643 4567899998 999986 355432221 111
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
.+..+..|+. +..||....|+.++++||++|+ +.+|+||+|+|+||+++|+++++++
T Consensus 134 -----------------~~~~g~~~~~--~~~n~~~~~g~~t~a~Ei~~q~----~~~d~vvv~~G~Gg~~~Gi~~~~k~ 190 (317)
T TIGR02991 134 -----------------VADRGLTMLP--PFDHPDIVAGQGTLGLEVVEQM----PDLATVLVPLSGGGLASGVAMAVKA 190 (317)
T ss_pred -----------------HHhcCCEeeC--CCCChHHHhhHHHHHHHHHHhC----CCCCEEEEEcChhHHHHHHHHHHHH
Confidence 1111223333 3457888999999999999995 3589999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHH-H-----HHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKN-L-----ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~-l-----~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~ 390 (444)
+++.++|+|||+++.+..+.+...+ . ...+++.++.+. + . .+...+.+.+++.+..+.|+|+|++++++
T Consensus 191 ~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~-~--~--~~~~~~~~~~~~vd~~v~V~d~e~~~a~~ 265 (317)
T TIGR02991 191 ARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGI-G--L--DNRVTFAMCKALLDEIVLVSEAEIAAGIR 265 (317)
T ss_pred hCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhcc-C--C--CCHHHHHHHHHhCCeEEEECHHHHHHHHH
Confidence 9999999999998766544332111 0 011222221110 0 0 11123445667788899999999999999
Q ss_pred HHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhhh
Q 013383 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLA 441 (444)
Q Consensus 391 ~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~~ 441 (444)
+|++++|+++||+ +++++|+++.. .+..+++||+|+||||.+..-++
T Consensus 266 ~l~~~~g~~ve~s-~a~~~Aal~~~---~~~~~~~vvvvltG~n~~~~~~~ 312 (317)
T TIGR02991 266 HAYAEEREIVEGA-GAVGIAALLAG---KIKNPGPCAVIVSGRNIDMDLHK 312 (317)
T ss_pred HHHHhCCcEEcch-HHHHHHHHHcC---ccccCCcEEEEeCCCCCCHHHHH
Confidence 9999999999997 68899999842 23347899999999999876554
No 32
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=4.2e-43 Score=348.30 Aligned_cols=280 Identities=14% Similarity=0.071 Sum_probs=213.4
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC----CeEEEeCcccchH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~----~~Vvt~G~s~GNh 154 (444)
|+|||++ ++++++.+ |.+||+|+|++| | +||||+|++.+++..+++.|. ++|++. |+|||
T Consensus 1 g~TPl~~---~~~l~~~~---------g~~i~~K~E~~~-p-tgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~--SsGN~ 64 (291)
T cd01561 1 GNTPLVR---LNRLSPGT---------GAEIYAKLEFFN-P-GGSVKDRIALYMIEDAEKRGLLKPGTTIIEP--TSGNT 64 (291)
T ss_pred CCCCEEE---ccccCCCC---------CCeEEEEecccC-C-CCcchHHHHHHHHHHHHHcCCCCCCCEEEEe--CCChH
Confidence 6899999 88877544 579999999998 6 799999999999999999987 668874 78999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHH
Q 013383 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEAS 233 (444)
Q Consensus 155 g~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~ 233 (444)
|+|+|++|+++|++|+||||...+. .+..+++.||+ |+.++...+...+++.+ .++
T Consensus 65 g~alA~~a~~~G~~~~i~vp~~~~~---~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~-~a~------------------- 121 (291)
T cd01561 65 GIGLAMVAAAKGYRFIIVMPETMSE---EKRKLLRALGAEVILTPEAEADGMKGAIA-KAR------------------- 121 (291)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCCH---HHHHHHHHcCCEEEEeCCCCcCCHHHHHH-HHH-------------------
Confidence 9999999999999999999987654 35667899998 99998652111112211 111
Q ss_pred HHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHH-HHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHH
Q 013383 234 LTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVF-RLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGL 312 (444)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~-t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~ 312 (444)
++.+..+. ++++.++.||....|+. +++.||.+|+ ++ .||+||+|+|+|||++|++.
T Consensus 122 ------------------~~~~~~~~-~~~~~~~~~p~~~~g~~~t~~~Ei~~ql--~~-~~d~vv~~~G~Gg~~~Gi~~ 179 (291)
T cd01561 122 ------------------ELAAETPN-AFWLNQFENPANPEAHYETTAPEIWEQL--DG-KVDAFVAGVGTGGTITGVAR 179 (291)
T ss_pred ------------------HHHhhCCC-cEEecCCCCchHHHHHHHHHHHHHHHHc--CC-CCCEEEEeCChHHHHHHHHH
Confidence 11122223 44556667899999987 9999999996 22 69999999999999999999
Q ss_pred HHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHH
Q 013383 313 GAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRI 392 (444)
Q Consensus 313 ~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~l 392 (444)
+|+.+++.++|+|||+++++.... . .. ...+.+.++... ....+...+.+..+.|+|+|++++++++
T Consensus 180 ~~~~~~~~~~vi~Ve~~~~~~~~~-~-~~-~~~~~~gi~~~~----------~~~~~~~~~~~~~~~V~d~e~~~a~~~l 246 (291)
T cd01561 180 YLKEKNPNVRIVGVDPVGSVLFSG-G-PP-GPHKIEGIGAGF----------IPENLDRSLIDEVVRVSDEEAFAMARRL 246 (291)
T ss_pred HHHHhCCCCEEEEEecCCCcccCC-C-CC-CCCcCCCCCCCC----------CCCccCchhCceeEEECHHHHHHHHHHH
Confidence 999999999999999998654200 0 00 001111122110 0112344567889999999999999999
Q ss_pred HHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCC
Q 013383 393 AQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (444)
Q Consensus 393 a~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~ 434 (444)
++++||++||+ +|+++++++++.++ ..++++||+|+||+-
T Consensus 247 ~~~~gi~~eps-sa~a~a~~~~~~~~-~~~~~~vv~v~~~~g 286 (291)
T cd01561 247 AREEGLLVGGS-SGAAVAAALKLAKR-LGPGKTIVTILPDSG 286 (291)
T ss_pred HHHhCeeEccc-HHHHHHHHHHHHHh-cCCCCeEEEEECCCc
Confidence 99999999998 79999999998654 346789999999964
No 33
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=3.1e-43 Score=364.39 Aligned_cols=287 Identities=15% Similarity=0.126 Sum_probs=214.5
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHH-HhcCCCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL-EDHIVTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a-~~~g~~~Vvt~G~s~GNhg~a 157 (444)
++|||++ ++++++.+ |.+||+|+|++| | +||||+|++.+.+..+ ...+.++||++ |+||||++
T Consensus 15 ~~TPl~~---~~~ls~~~---------g~~iy~K~E~~~-p-tGSfK~RgA~~~i~~l~~~~~~~gvv~a--SsGN~g~a 78 (409)
T TIGR02079 15 PHTPLQL---NERLSEKY---------GANIYLKREDLQ-P-VRSYKIRGAYNFLKQLSDAQLAKGVVCA--SAGNHAQG 78 (409)
T ss_pred CCCCccc---cHHHHHHh---------CCEEEEEecCCC-C-CCCcHHHHHHHHHHhCCHHhhCCEEEEE--CccHHHHH
Confidence 8999999 88887655 469999999998 7 8999999999998774 34445778886 57999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeC--CcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHH
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVP--RTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASL 234 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~--~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~ 234 (444)
+|++|+++|++|+||||..+|.. +...++.||| |+.|. ++.|++..+. |.++
T Consensus 79 ~A~~a~~~G~~~~iv~p~~~~~~---k~~~~~~~GA~vv~v~~~g~~~~~a~~~----a~~~------------------ 133 (409)
T TIGR02079 79 FAYACRHLGVHGTVFMPATTPKQ---KIDRVKIFGGEFIEIILVGDTFDQCAAA----AREH------------------ 133 (409)
T ss_pred HHHHHHHcCCCEEEEECCCCCHH---HHHHHHHcCCCeeEEEEeCCCHHHHHHH----HHHH------------------
Confidence 99999999999999999988754 3456899997 43222 2345432211 1111
Q ss_pred HhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHH
Q 013383 235 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA 314 (444)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~ 314 (444)
.+..+..|+.| +.||....|+.++++||++|+. ..||+||+|+||||+++|++.++
T Consensus 134 -------------------~~~~g~~~~~~--~~~~~~~~g~~ti~~Ei~~q~~---~~~D~vv~pvG~GG~~~Gia~~~ 189 (409)
T TIGR02079 134 -------------------VEDHGGTFIPP--FDDPRIIEGQGTVAAEILDQLP---EKPDYVVVPVGGGGLISGLTTYL 189 (409)
T ss_pred -------------------HHhcCCEEeCC--CCCHhHhhhhHHHHHHHHHhcC---CCCCEEEEEecHhHHHHHHHHHH
Confidence 11122334433 3478888899999999999962 25999999999999999999999
Q ss_pred HhcCCCCeEEEEeccCChhHHHHHHHHH------HHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHH
Q 013383 315 ICLGLPWEVTAIALVDTIDGYKQQEKNL------ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 388 (444)
Q Consensus 315 ~~~g~~~~vigV~~~~~~~~~~~~~~~l------~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a 388 (444)
++++++++|+|||+++++..+.+...+. ...+++.+ ....++...+.+++.+.++.+.|+|+++.++
T Consensus 190 k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~-------~v~~~g~~~~~~~~~~vd~vv~V~d~e~~~a 262 (409)
T TIGR02079 190 AGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGA-------AVKRVGDLNFKALKDVPDEVTLVPEGAVCTT 262 (409)
T ss_pred HHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccc-------cCCCCcHHHHHHHHHhCCcEEEECHHHHHHH
Confidence 9999999999999998765443321110 01111111 1222333344556677888999999999999
Q ss_pred HHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhh
Q 013383 389 CHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGL 440 (444)
Q Consensus 389 ~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~ 440 (444)
+++|++++|+++||+ +|+++|+++++.+ . .++++||+|+||||.++.-+
T Consensus 263 ~~~l~~~~gi~ve~a-gaa~lAa~~~~~~-~-~~~~~Vv~ilsGgn~d~~~~ 311 (409)
T TIGR02079 263 ILDLYNLEGIVAEPA-GALSIAALERLGE-E-IKGKTVVCVVSGGNNDIERT 311 (409)
T ss_pred HHHHHHhcCceecch-HHHHHHHHHhhhh-h-cCCCeEEEEECCCCCCHHHH
Confidence 999999999999997 6899999988643 2 35889999999999987654
No 34
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=4.9e-43 Score=353.84 Aligned_cols=287 Identities=16% Similarity=0.091 Sum_probs=214.0
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC----CeEEEeCcccchH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~----~~Vvt~G~s~GNh 154 (444)
|+|||++ ++++++.+ |.+||+|+|++| | +||||+|++.+++.++++.|. ++||++ |+|||
T Consensus 12 g~TPL~~---~~~l~~~~---------g~~i~~K~E~~n-p-tGS~K~Rga~~~v~~a~~~g~~~~g~~vv~a--SsGN~ 75 (330)
T PRK10717 12 GNTPLIR---LNRASEAT---------GCEILGKAEFLN-P-GGSVKDRAALNIIWDAEKRGLLKPGGTIVEG--TAGNT 75 (330)
T ss_pred CCCceEE---ccccCCCC---------CCeEEEEeeccC-C-CCCchHHHHHHHHHHHHHcCCCCCCCEEEEe--CCcHH
Confidence 9999999 88887654 469999999998 7 799999999999999999887 678875 67999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHH
Q 013383 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEAS 233 (444)
Q Consensus 155 g~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~ 233 (444)
|+|+|++|+++|++|+||||...++. +..+++.||| |+.++...|++.+...+. +.++
T Consensus 76 g~alA~~a~~~G~~~~vv~p~~~~~~---k~~~~~~~GA~V~~~~~~~~~~~~~~~~~-a~~~----------------- 134 (330)
T PRK10717 76 GIGLALVAAARGYKTVIVMPETQSQE---KKDLLRALGAELVLVPAAPYANPNNYVKG-AGRL----------------- 134 (330)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHH---HHHHHHHcCCEEEEeCCcccccccchHHH-HHHH-----------------
Confidence 99999999999999999999987643 5567899998 999986423321111100 1111
Q ss_pred HHhhhhhccccccccccccccccCCcEEEecCCCccHHHH-HHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHH
Q 013383 234 LTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGL 312 (444)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~-~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~ 312 (444)
+.++....++.++++.+..||... .||.+++.||++|+ ++ .||+||+|+||||+++|++.
T Consensus 135 ----------------a~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ql--~~-~~d~iv~~vG~GG~~~Gi~~ 195 (330)
T PRK10717 135 ----------------AEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQT--DG-KVDGFVCAVGTGGTLAGVSR 195 (330)
T ss_pred ----------------HHHHHhhCCCCeEecCCCCChhhHHHHHHhHHHHHHHhc--CC-CCCEEEEecCchHHHHHHHH
Confidence 111112222345677777889864 67999999999995 32 68999999999999999999
Q ss_pred HHHhcCCCCeEEEEeccCChhHHHHHHHH-HH---HHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHH
Q 013383 313 GAICLGLPWEVTAIALVDTIDGYKQQEKN-LI---SEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 388 (444)
Q Consensus 313 ~~~~~g~~~~vigV~~~~~~~~~~~~~~~-l~---~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a 388 (444)
++++++++++|+|||+++++ .+.....+ .. ..+.+.++.+ .+ ...+.....+..+.|+|+|++++
T Consensus 196 ~~k~~~~~~~vi~Vep~~~~-~~~~~~~g~~~~~~~~~~~gl~~~-------~~---~~~~~~~~~d~~v~V~d~e~~~a 264 (330)
T PRK10717 196 YLKETNPKVKIVLADPTGSA-LYSYYKTGELKAEGSSITEGIGQG-------RI---TANLEGAPIDDAIRIPDEEALST 264 (330)
T ss_pred HHHHhCCCCEEEEEcCCCCc-cccccccCCcCCCCCcccCcCCCC-------cC---CcccChhhCCEEEEECHHHHHHH
Confidence 99999999999999999873 22211000 00 0111212211 11 11223334567999999999999
Q ss_pred HHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCC
Q 013383 389 CHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (444)
Q Consensus 389 ~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~ 434 (444)
++++++++||++||+ +|+++++++++.++ +.++++||+|+||+-
T Consensus 265 ~~~l~~~~gi~veps-sga~laa~~~l~~~-~~~~~~Vv~v~~g~g 308 (330)
T PRK10717 265 AYRLLEEEGLCLGGS-SGINVAAALRLARE-LGPGHTIVTILCDSG 308 (330)
T ss_pred HHHHHHhcCCeEeec-HHHHHHHHHHHHHh-cCCCCEEEEEECCCc
Confidence 999999999999995 89999999998654 456889999999943
No 35
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=8.4e-43 Score=358.56 Aligned_cols=339 Identities=15% Similarity=0.078 Sum_probs=234.5
Q ss_pred cccchhhHHHHHHh--hhhcccCCC----ccccccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeC
Q 013383 41 VRMSGEELLSRLLD--RKWALTSPD----SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRD 114 (444)
Q Consensus 41 ~~~~~e~~~~~l~~--~~w~~~~~~----~~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrE 114 (444)
.++-||++++.|.+ ..|.....+ .+++.+...+ ++++|||++ ++++++.+| +.+||+|+|
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~TPL~~---~~~l~~~~g--------~~~iy~K~E 73 (385)
T TIGR00263 8 GQYVPETLMPALEELEAAFEDAKADPAFWAELNELLRNY---AGRPTPLTF---APNLTEALG--------GAKIYLKRE 73 (385)
T ss_pred CEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCCCcee---hHHHHHHhC--------CCeEEEEeC
Confidence 36889999999998 667443333 3344444444 778999999 888887765 379999999
Q ss_pred CCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-
Q 013383 115 DLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK- 193 (444)
Q Consensus 115 dl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga- 193 (444)
++| | +||||+|.+.+.+..+++.|.+++|+.. |+||||+|+|++|+.+|++|+||||....+....|+.+++.|||
T Consensus 74 ~~n-p-tGS~K~R~a~~~~~~a~~~g~~~vi~e~-ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~ 150 (385)
T TIGR00263 74 DLN-H-TGAHKINNALGQALLAKRMGKKRIIAET-GAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAK 150 (385)
T ss_pred CCC-C-CccchHHHHHHHHHHHHHcCCCEEEEEc-CcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCE
Confidence 999 7 8999999998888888888988887632 56999999999999999999999997532222246678899998
Q ss_pred EEEeCCc--chhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccC-CcEEEecCCCc--
Q 013383 194 VTYVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCR-KKVLIVNEGAG-- 268 (444)
Q Consensus 194 V~~v~~~--~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ip~g~~-- 268 (444)
|+.|+.+ .+.+ +....++++ .+.. +.+|+++ +..
T Consensus 151 Vv~v~~~~~~~~~---a~~~~~~~~-------------------------------------~~~~~~~~y~~~-~~~~~ 189 (385)
T TIGR00263 151 VIPVTSGSGTLKD---AVNEALRDW-------------------------------------VTSVDDTHYVLG-SAVGP 189 (385)
T ss_pred EEEECCCCCCHHH---HHHHHHHHH-------------------------------------HHhcCCceEEeC-CcCCC
Confidence 9998753 2332 111111110 1111 1234332 211
Q ss_pred c--HHH-HHHHHHHHHHHHHhHHc-CCCCcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCChhHHHHHHHHHHH
Q 013383 269 D--AVA-LLGVFRLLQYLSQDHLL-GRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLIS 344 (444)
Q Consensus 269 n--p~~-~~G~~t~~~Ei~~q~~~-g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~ 344 (444)
+ |.. ..|+.++++||++|+.. .+..||+||+|+|||||++|++.++.. .+.++|||||++++..........+..
T Consensus 190 ~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~ 268 (385)
T TIGR00263 190 HPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAK 268 (385)
T ss_pred CCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhc
Confidence 2 333 47788899999999732 123589999999999999999999864 689999999998852100000000100
Q ss_pred HH---------------------HHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHHHhCCccccc
Q 013383 345 EF---------------------KRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPV 403 (444)
Q Consensus 345 ~~---------------------~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ 403 (444)
+. ..++.. +...+.+.+..+.+.+...+..+.|+|+|+++++++|++++||+++|+
T Consensus 269 g~~~~~~~~~~~~~~~~~~~~~~~~tia~---gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~s 345 (385)
T TIGR00263 269 GSPGVLHGMKTYLLQDEDGQILEAHSVSA---GLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALE 345 (385)
T ss_pred CCeeEecCcccccccCCCCcccccceeec---cccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechH
Confidence 00 001111 111111222233344444566899999999999999999999999997
Q ss_pred ccHHHHHHHHHHhhhcCCCCCeEEEEEcC-CCccchhhhhc
Q 013383 404 YTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFGLAQR 443 (444)
Q Consensus 404 ysaaa~aal~~l~~~~~~~g~~Vv~i~TG-G~~~l~~~~~r 443 (444)
+|+++++++++.++ +.++++||+++|| |+.++..+.++
T Consensus 346 -saaalaa~~~~~~~-l~~~~~Vv~i~~g~G~~d~~~~~~~ 384 (385)
T TIGR00263 346 -SSHALAHLEKIAPT-LPKDQIVVVNLSGRGDKDIFTIAKY 384 (385)
T ss_pred -HHHHHHHHHHHHHh-CCCCCeEEEEeCCCCcCCHHHHHhh
Confidence 68999999987654 5578999999999 99988766543
No 36
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=3e-43 Score=364.54 Aligned_cols=285 Identities=13% Similarity=0.089 Sum_probs=218.8
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHH-hcCCCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~-~~g~~~Vvt~G~s~GNhg~a 157 (444)
++|||++ ++++++.+ |++||+|+|++| | +||||+|.+.+++.++. +.+.++||++ |+||||++
T Consensus 21 ~~TPl~~---~~~ls~~~---------g~~i~~K~E~~n-p-tGS~K~R~a~~~i~~~~~~~~~~~vv~a--SsGN~g~a 84 (404)
T PRK08198 21 RRTPLEY---SRTLSELT---------GAEVYLKCENLQ-R-TGSFKIRGAYNKIASLSEEERARGVVAA--SAGNHAQG 84 (404)
T ss_pred CCCCcee---hhhHHHHh---------CCEEEEEECCCC-C-CCCCHHHHHHHHHHhccHhhcCCEEEEE--CCCHHHHH
Confidence 8999999 88887665 469999999998 7 89999999999988876 5567889986 45999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+.+|++|+||||...|.. +..+++.||| |+.++. .+++..+. |.++
T Consensus 85 lA~~a~~~G~~~~iv~p~~~~~~---k~~~~~~~GA~Vi~~~~-~~~~~~~~----a~~~-------------------- 136 (404)
T PRK08198 85 VAYAASLLGIKATIVMPETAPLS---KVKATRSYGAEVVLHGD-VYDEALAK----AQEL-------------------- 136 (404)
T ss_pred HHHHHHHcCCCEEEEECCCCCHH---HHHHHHhCCCEEEEECC-CHHHHHHH----HHHH--------------------
Confidence 99999999999999999988654 3456899998 988875 35532221 1111
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
.+..+..|+.| ..||....|+.|++.||++|+ +++|+||+|+||||+++|++.+++.
T Consensus 137 -----------------~~~~g~~~~~~--~~~~~~~~g~~t~a~EI~~q~----~~~d~vv~~vG~GG~~~Gi~~~~k~ 193 (404)
T PRK08198 137 -----------------AEETGATFVHP--FDDPDVIAGQGTIGLEILEDL----PDVDTVVVPIGGGGLISGVATAVKA 193 (404)
T ss_pred -----------------HHhcCCEecCC--CCCccHHHHHHHHHHHHHHhC----CCCCEEEEEeCHhHHHHHHHHHHHH
Confidence 11122234333 456778889999999999996 3689999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHH------HHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKN------LISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~------l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~ 390 (444)
++|+++|||||+++++..+.+...+ ...++++.++ +..++...+.+++++.++.+.|+|+++.++++
T Consensus 194 ~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~-------v~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~ 266 (404)
T PRK08198 194 LRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIA-------VKRPGDLTFEIIRELVDDVVTVSDEEIARAIL 266 (404)
T ss_pred hCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccc-------cCCcCHHHHHHHHHhCCEEEEECHHHHHHHHH
Confidence 9999999999999876543321110 0111111111 11222334455678889999999999999999
Q ss_pred HHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhh
Q 013383 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGL 440 (444)
Q Consensus 391 ~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~ 440 (444)
++++++|+++||+ +|+++|+++.+. .+.++++||+|+||||.+..-+
T Consensus 267 ~l~~~~g~~~e~s-ga~~lAal~~~~--~~~~~~~vv~vl~ggn~~~~~l 313 (404)
T PRK08198 267 LLLERAKLVVEGA-GAVSVAALLSGK--LDVKGKKVVAVLSGGNIDVLLL 313 (404)
T ss_pred HHHHhcCeEEehH-HHHHHHHHHhch--hhcCCCeEEEEECCCCCCHHHH
Confidence 9999999999997 789999999864 3456889999999999876543
No 37
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=3.1e-43 Score=354.24 Aligned_cols=295 Identities=17% Similarity=0.177 Sum_probs=218.9
Q ss_pred cccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEE
Q 013383 67 HQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVT 146 (444)
Q Consensus 67 ~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt 146 (444)
+.+.+.. |+|||++ +++++..+| +.+||+|+|++| | +||||+|++.+++.++.+.|.++||+
T Consensus 14 ~~~~l~~-----g~TPl~~---~~~l~~~~g--------~~~i~~K~E~~n-p-tGS~K~R~a~~~l~~a~~~g~~~vv~ 75 (324)
T cd01563 14 DIVSLGE-----GNTPLVR---APRLGERLG--------GKNLYVKDEGLN-P-TGSFKDRGMTVAVSKAKELGVKAVAC 75 (324)
T ss_pred CcccCCC-----CCCceee---chhhHhhcC--------CCceEEEecCCC-C-cccHHHhhHHHHHHHHHHcCCCEEEE
Confidence 4456654 9999999 888876554 368999999998 7 89999999999999999999999998
Q ss_pred eCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccc
Q 013383 147 CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVW 225 (444)
Q Consensus 147 ~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w 225 (444)
+ |+||||.|+|++|+.+|++|++|||.+.++ .+..+++.||+ |+.++. .++++.+. ++++
T Consensus 76 ~--SsGN~g~alA~~a~~~G~~~~ivvp~~~~~---~k~~~l~~~GA~Vi~~~~-~~~~~~~~----a~~~--------- 136 (324)
T cd01563 76 A--STGNTSASLAAYAARAGIKCVVFLPAGKAL---GKLAQALAYGATVLAVEG-NFDDALRL----VREL--------- 136 (324)
T ss_pred e--CCCHHHHHHHHHHHHcCCceEEEEeCCCCH---HHHHHHHHcCCEEEEECC-cHHHHHHH----HHHH---------
Confidence 6 679999999999999999999999988754 34567899998 999886 35443222 1111
Q ss_pred hhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChh
Q 013383 226 CNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGT 305 (444)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGg 305 (444)
.+.. ..|+. ++.||...+||.+++.||.+|+ ++..||+||+|+||||
T Consensus 137 ----------------------------~~~~-~~~~~--~~~n~~~~~g~~t~~~Ei~~q~--~~~~~d~vv~~vGtGg 183 (324)
T cd01563 137 ----------------------------AEEN-WIYLS--NSLNPYRLEGQKTIAFEIAEQL--GWEVPDYVVVPVGNGG 183 (324)
T ss_pred ----------------------------HHhc-Ceecc--CCCCcceecchhhhHHHHHHHc--CCCCCCEEEEecCCcH
Confidence 1112 23333 3468888899999999999996 2236999999999999
Q ss_pred hHHHHHHHHHhcC------CCCeEEEEeccCChhHHHHHHHH---HHH-HHHHHhccccccCCcccccccceeeeecccC
Q 013383 306 TAVGLGLGAICLG------LPWEVTAIALVDTIDGYKQQEKN---LIS-EFKRLFGFLLKKSSLNEVDGEIVHWVERCRP 375 (444)
Q Consensus 306 t~aGl~~~~~~~g------~~~~vigV~~~~~~~~~~~~~~~---l~~-~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 375 (444)
|++|++.+++.+. +.++||||++.++...+.....+ ... ....++..++ ....+......+.+++++.+
T Consensus 184 ~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl-~~~~~~~~~~~~~~~~~~~~ 262 (324)
T cd01563 184 NITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAI-RIGNPASGPKALRAVRESGG 262 (324)
T ss_pred HHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeee-ecCCCCCHHHHHHHHHHhCC
Confidence 9999999998764 57999999998865433221110 000 0000111110 00000001122345566778
Q ss_pred CeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhc-CCCCCeEEEEEcCC
Q 013383 376 RKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK-LKQDADVVMLHTGG 433 (444)
Q Consensus 376 ~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~-~~~g~~Vv~i~TGG 433 (444)
..+.|+|+|++++++++++++||++||+ +|+++++++++.++. +.++++||+||||+
T Consensus 263 ~~~~V~d~e~~~a~~~l~~~~gi~~~ps-sa~alaa~~~l~~~~~~~~~~~Vv~v~tg~ 320 (324)
T cd01563 263 TAVAVSDEEILEAQKLLARTEGIFVEPA-SAASLAGLKKLREEGIIDKGERVVVVLTGH 320 (324)
T ss_pred EEEEECHHHHHHHHHHHHhcCCceeCch-HHHHHHHHHHHHHcCCCCCCCcEEEEeCCC
Confidence 8999999999999999999999999998 899999999887543 56788999999995
No 38
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=7.3e-43 Score=347.99 Aligned_cols=278 Identities=18% Similarity=0.109 Sum_probs=211.6
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC----CeEEEeCcccchH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~----~~Vvt~G~s~GNh 154 (444)
|+|||++ ++++++.+ |.+||+|+|++| | +||||+|++.+++..+++.|. ++|++. |+|||
T Consensus 6 g~TPL~~---~~~l~~~~---------g~~i~~K~E~~~-p-tGS~K~R~a~~~~~~a~~~g~~~~g~~vv~a--SsGN~ 69 (299)
T TIGR01136 6 GNTPLVR---LNRLAPGC---------DARVLAKLEGRN-P-SGSVKDRIALSMIEDAEKRGLLKPGDTIIEA--TSGNT 69 (299)
T ss_pred CCCceEE---ccccCCCC---------CceEEEEEcccC-C-CCCccHHHHHHHHHHHHHcCCCCCCCEEEEe--CCChH
Confidence 8999999 77776543 469999999998 7 899999999999999999887 668764 77999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcc-hhhHHHHHHHHhhhhhcCCCCccchhhhHHH
Q 013383 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTH-YAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (444)
Q Consensus 155 g~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~-~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~ 232 (444)
|+|+|++|+.+|++|+||||...++ .+..+++.||+ |+.++... ++++.+. |+
T Consensus 70 g~alA~~a~~~G~~~~i~vp~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~----a~------------------ 124 (299)
T TIGR01136 70 GIALAMVAAAKGYKLILTMPETMSL---ERRKLLRAYGAELILTPAEEGMKGAIDK----AE------------------ 124 (299)
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCH---HHHHHHHHcCCEEEEeCCCCChHHHHHH----HH------------------
Confidence 9999999999999999999998764 35567899998 99998641 2322111 11
Q ss_pred HHHhhhhhccccccccccccccccCCcEEEecCCCccHHH-HHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHH
Q 013383 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (444)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~-~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~ 311 (444)
++.+.. +.|+++.++.||.. ..|+.+++.||++|+ ++ .||+||+|+|+||+++|++
T Consensus 125 -------------------~~~~~~-~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql--~~-~~d~iv~~vG~Gg~~~G~~ 181 (299)
T TIGR01136 125 -------------------ELAAET-NKYVMLDQFENPANPEAHYKTTGPEIWRDT--DG-RIDHFVAGVGTGGTITGVG 181 (299)
T ss_pred -------------------HHHhhC-CCeEecCCCCCchhHHHHHHHHHHHHHHhc--CC-CCCEEEEcCchhHHHHHHH
Confidence 111222 34556666667665 678999999999996 32 6999999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHH
Q 013383 312 LGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHR 391 (444)
Q Consensus 312 ~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~ 391 (444)
.+|+.+++.+||+|||+++++..+.+.. .. ..+ ..++.. .....+...+.+..+.|+|+++++++++
T Consensus 182 ~~~~~~~~~~~vi~Ve~~~~~~~~~~~~-~~-~~~-~~i~~~----------~~~~~~~~~~~d~~~~V~d~e~~~a~~~ 248 (299)
T TIGR01136 182 RYLKEQNPNIKIVAVEPAESPVLSGGEP-GP-HKI-QGIGAG----------FIPKILDLSLIDEVITVSDEDAIETARR 248 (299)
T ss_pred HHHHHhCCCCEEEEEecCCCccccCCCC-CC-ccC-CCCCCC----------CCCccCChhhCCEEEEECHHHHHHHHHH
Confidence 9999999999999999998754332110 00 000 011111 0111233455677999999999999999
Q ss_pred HHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCC
Q 013383 392 IAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (444)
Q Consensus 392 la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~ 434 (444)
|++++||++||+ +|+++++++++.++...++++||+|+||.-
T Consensus 249 l~~~~gi~~e~s-saa~~a~~~~~~~~~~~~~~~vv~i~~d~g 290 (299)
T TIGR01136 249 LAREEGILVGIS-SGAAVAAALKLAKRLENADKVIVAILPDTG 290 (299)
T ss_pred HHHHhCceEcch-HHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 999999999997 799999999987653345889999999843
No 39
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=3.4e-43 Score=365.57 Aligned_cols=287 Identities=15% Similarity=0.137 Sum_probs=215.1
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHH-HhcCCCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL-EDHIVTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a-~~~g~~~Vvt~G~s~GNhg~a 157 (444)
++|||++ ++++++.+ |.+||+|+|++| | +||||+|.+.+.+..+ .+.+.++||++ |+||||++
T Consensus 24 ~~TPl~~---~~~ls~~~---------g~~l~~K~E~~~-p-tGSfK~RgA~~~i~~l~~~~~~~~Vv~a--SsGN~g~a 87 (420)
T PRK08639 24 PETPLQR---NDYLSEKY---------GANVYLKREDLQ-P-VRSYKLRGAYNAISQLSDEELAAGVVCA--SAGNHAQG 87 (420)
T ss_pred cCCCccc---hHHHHHHh---------CCEEEEEecCCC-C-CCCcHHHHHHHHHHhCCHHhhCCEEEEE--CccHHHHH
Confidence 8999999 77777654 469999999998 6 8999999999988774 33445788886 56999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeC--CcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHH
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVP--RTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASL 234 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~--~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~ 234 (444)
+|++|+++|++|+||||...|.. +...++.||| |+.|. +..|++..+. |.++
T Consensus 88 lA~~a~~~G~~~~IvmP~~~~~~---k~~~~r~~GA~vv~v~~~g~~~~~a~~~----a~~~------------------ 142 (420)
T PRK08639 88 VAYACRHLGIPGVIFMPVTTPQQ---KIDQVRFFGGEFVEIVLVGDTFDDSAAA----AQEY------------------ 142 (420)
T ss_pred HHHHHHHcCCCEEEEECCCChHH---HHHHHHHcCCCeeEEEEeCcCHHHHHHH----HHHH------------------
Confidence 99999999999999999987754 3456899997 54432 2334432211 1111
Q ss_pred HhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCC--cCEEEEeCCChhhHHHHHH
Q 013383 235 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKR--AIKFVVDAGTGTTAVGLGL 312 (444)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~--~d~vvv~vGtGgt~aGl~~ 312 (444)
.+..+..|+.|+ .||....|+.++++||++|+. .. ||+||+|+||||+++|++.
T Consensus 143 -------------------a~~~g~~~~~~~--~~~~~~~G~~tig~EI~eq~~---~~~~~D~vv~~vG~GG~~aGva~ 198 (420)
T PRK08639 143 -------------------AEETGATFIPPF--DDPDVIAGQGTVAVEILEQLE---KEGSPDYVFVPVGGGGLISGVTT 198 (420)
T ss_pred -------------------HHhcCCcccCCC--CChhHhcchhHHHHHHHHhcc---ccCCCCEEEEecChhHHHHHHHH
Confidence 111223344433 478888999999999999963 13 9999999999999999999
Q ss_pred HHHhcCCCCeEEEEeccCChhHHHHHHHHH------HHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHH
Q 013383 313 GAICLGLPWEVTAIALVDTIDGYKQQEKNL------ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEI 386 (444)
Q Consensus 313 ~~~~~g~~~~vigV~~~~~~~~~~~~~~~l------~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~ 386 (444)
+++.++|+++|+|||+++++..+.+...+. ...+++.+ .+..++...+++++++.++.+.|+|+|+.
T Consensus 199 ~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi-------~v~~~g~~~~~~~~~~vd~~v~V~d~ei~ 271 (420)
T PRK08639 199 YLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGA-------AVARVGDLTFEILKDVVDDVVLVPEGAVC 271 (420)
T ss_pred HHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeeccc-------ccCCccHHHHHHHHHhCCeEEEECHHHHH
Confidence 999999999999999998765433221110 01111111 11223334555667888999999999999
Q ss_pred HHHHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhh
Q 013383 387 EACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGL 440 (444)
Q Consensus 387 ~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~ 440 (444)
+++++|++++|+++||+ +|+++|+++++.+ .+ ++++||+|+||||.++.-+
T Consensus 272 ~a~~~l~~~~gi~~e~s-ga~~lAal~~~~~-~~-~~~~vv~v~sGgn~d~~~~ 322 (420)
T PRK08639 272 TTILELYNKEGIVAEPA-GALSIAALELYKD-EI-KGKTVVCVISGGNNDIERM 322 (420)
T ss_pred HHHHHHHHhcCceecch-HHHHHHHHHhhhh-hc-CCCeEEEEeCCCCCCHHHH
Confidence 99999999999999997 7899999988643 34 6889999999999987544
No 40
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=7.3e-43 Score=360.74 Aligned_cols=308 Identities=19% Similarity=0.163 Sum_probs=225.8
Q ss_pred hhhccc--CCCccccccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhh
Q 013383 55 RKWALT--SPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDAL 132 (444)
Q Consensus 55 ~~w~~~--~~~~~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~ 132 (444)
+.|.+. .|.. -..+++.+ |+|||++ ++++++.+|. .+||+|+|++| | +||||||++.++
T Consensus 46 ~~wry~~~lp~~-~~~v~l~~-----G~TPLv~---~~~l~~~~g~--------~~l~~K~E~~n-P-TGSfKdRga~~~ 106 (397)
T PRK06260 46 GVWRYKELLPVK-KKIVSLNE-----GGTPLYR---CPNLEKELGV--------KELYVKHEGAN-P-TGSFKDRGMTVG 106 (397)
T ss_pred ceeeehhhcCCC-CCcccCCC-----CCCCeEE---chhhHHHhCC--------CcEEEEeCCCC-C-CcCcHHHHHHHH
Confidence 567543 3332 12456655 9999999 8888766542 38999999999 7 899999999999
Q ss_pred HHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCC-CCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHH
Q 013383 133 LPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE-QPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLK 210 (444)
Q Consensus 133 l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~-~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~ 210 (444)
+..|++.|.++||+. |+||||+|+|++|+++|++|+||||.. .+. .+..+++.||+ |+.|+.. |++..+.
T Consensus 107 v~~a~~~g~~~vv~a--SsGN~g~alA~~aa~~G~~~~i~vP~~~~~~---~k~~~~~~~GA~vi~v~~~-~~~~~~~-- 178 (397)
T PRK06260 107 VTKALELGVKTVACA--STGNTSASLAAYAARAGLKCYVLLPAGKVAL---GKLAQALLHGAKVLEVDGN-FDDALDM-- 178 (397)
T ss_pred HHHHHHcCCCEEEEe--CCcHHHHHHHHHHHHcCCcEEEEEeCCCccH---HHHHHHHhcCCEEEEECCc-HHHHHHH--
Confidence 999999999999975 779999999999999999999999986 443 34557889998 9999863 5543222
Q ss_pred HHhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcC
Q 013383 211 SYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLG 290 (444)
Q Consensus 211 ~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g 290 (444)
++++ .+. ..+|+++. .||...+|++++++||++|+ +
T Consensus 179 --a~~~-------------------------------------~~~-~g~y~~~~--~np~~~~G~~t~a~Ei~eQl--~ 214 (397)
T PRK06260 179 --VVEL-------------------------------------AKE-GKIYLLNS--INPFRLEGQKTIGFEIADQL--G 214 (397)
T ss_pred --HHHH-------------------------------------Hhh-CCEEeecC--CCchhhcchhhHHHHHHHHh--C
Confidence 1111 111 23555543 38999999999999999996 3
Q ss_pred CCCcCEEEEeCCChhhHHHHHHHHHhcC------CCCeEEEEeccCChhHHHHHHHHH--HHHH--HHHhccccccCCcc
Q 013383 291 RKRAIKFVVDAGTGTTAVGLGLGAICLG------LPWEVTAIALVDTIDGYKQQEKNL--ISEF--KRLFGFLLKKSSLN 360 (444)
Q Consensus 291 ~~~~d~vvv~vGtGgt~aGl~~~~~~~g------~~~~vigV~~~~~~~~~~~~~~~l--~~~~--~~~i~~~~~~~~~~ 360 (444)
+..||+||+|+|+||+++|++++|+++. ..+||+|||+++..........+. .... .+++.... .+..+
T Consensus 215 ~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i-~i~~p 293 (397)
T PRK06260 215 WEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAI-RIGNP 293 (397)
T ss_pred CCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeee-EeCCC
Confidence 3369999999999999999999998864 347999999998754332211110 0000 01111110 00001
Q ss_pred cccccceeeeecccCCeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhc-CCCCCeEEEEEcCCCc
Q 013383 361 EVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK-LKQDADVVMLHTGGTL 435 (444)
Q Consensus 361 ~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~-~~~g~~Vv~i~TGG~~ 435 (444)
......+..++++.+..+.|+|+|+++++++|++++||++||+ +|+++++++++.++. +.++++||+|+||++.
T Consensus 294 ~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~veps-saaalAa~~~l~~~g~i~~~~~VV~i~tG~gl 368 (397)
T PRK06260 294 VNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPA-SAASVAGLIKLVEEGVIDKDERVVCITTGHLL 368 (397)
T ss_pred CCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCch-HHHHHHHHHHHHHcCCCCCCCeEEEEeCCCcc
Confidence 1111234456677788999999999999999999999999998 799999999987653 6678999999999875
No 41
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=5e-43 Score=360.13 Aligned_cols=281 Identities=14% Similarity=0.126 Sum_probs=213.9
Q ss_pred CCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC-CeEEEeCcccchHHHHHH
Q 013383 81 GPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-TDLVTCGGCQSAHATAVA 159 (444)
Q Consensus 81 TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~-~~Vvt~G~s~GNhg~alA 159 (444)
|||++ ++++++.+ |.+||+|+|++| | +||||+|.+.+++.++.+.+. ++||++ |+||||+++|
T Consensus 1 TPl~~---~~~ls~~~---------g~~i~~K~E~~~-p-tgS~K~R~a~~~i~~~~~~~~~~~vv~a--SsGN~g~alA 64 (380)
T TIGR01127 1 TPLIY---STTLSDIT---------GSEVYLKLENLQ-K-TGSFKIRGALNKIANLSEDQRQRGVVAA--SAGNHAQGVA 64 (380)
T ss_pred CCcee---hHHHHHHh---------CCeEEEEecCCC-C-CCCcHHHHHHHHHHhcchhccCCEEEEE--CCCHHHHHHH
Confidence 89999 88887655 469999999998 7 899999999999999887775 568876 5599999999
Q ss_pred HHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhhh
Q 013383 160 VSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQK 238 (444)
Q Consensus 160 ~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~~ 238 (444)
++|+++|++|+||||...|.. +..+++.||| |++++. .|++..+. |+++
T Consensus 65 ~~a~~~G~~~~iv~p~~~~~~---k~~~~~~~GA~V~~~~~-~~~~a~~~----a~~~---------------------- 114 (380)
T TIGR01127 65 YAAKKFGIKAVIVMPESAPPS---KVKATKSYGAEVILHGD-DYDEAYAF----ATSL---------------------- 114 (380)
T ss_pred HHHHHcCCCEEEEEcCCCcHH---HHHHHHHCCCEEEEECC-CHHHHHHH----HHHH----------------------
Confidence 999999999999999988643 4567899998 988875 35432211 2211
Q ss_pred hhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHhcC
Q 013383 239 SRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLG 318 (444)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g 318 (444)
.+..+..|+.| ..||....|+.+++.||++|+ +.||+||+|+||||+++|++.+++.++
T Consensus 115 ---------------~~~~~~~~~~~--~~~~~~~~g~~t~~~Ei~~q~----~~~D~vv~~vG~Gg~~aGi~~~~k~~~ 173 (380)
T TIGR01127 115 ---------------AEEEGRVFVHP--FDDEFVMAGQGTIGLEIMEDI----PDVDTVIVPVGGGGLISGVASAAKQIN 173 (380)
T ss_pred ---------------HHhcCCEecCC--CCChhhhhhhHHHHHHHHHhC----CCCCEEEEEeChHHHHHHHHHHHHHhC
Confidence 12222334333 346888899999999999995 369999999999999999999999999
Q ss_pred CCCeEEEEeccCChhHHHHHHHH-H-----HHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHH
Q 013383 319 LPWEVTAIALVDTIDGYKQQEKN-L-----ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRI 392 (444)
Q Consensus 319 ~~~~vigV~~~~~~~~~~~~~~~-l-----~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~l 392 (444)
|.+||+|||+++++..+.+...+ . ..++++.++ ...+....+.+++++.++.+.|+|+++.++++++
T Consensus 174 p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~-------~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l 246 (380)
T TIGR01127 174 PNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIA-------VKKPGDLTFNIIKEYVDDVVTVDEEEIANAIYLL 246 (380)
T ss_pred CCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchh-------CCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHH
Confidence 99999999999876533221110 0 011111111 1112223445567788999999999999999999
Q ss_pred HHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccch
Q 013383 393 AQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMF 438 (444)
Q Consensus 393 a~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~ 438 (444)
++++|+++||+ +|++++++++... . .++++||+|+||||++..
T Consensus 247 ~~~~gi~~e~s-~a~~laa~~~~~~-~-~~~~~vv~i~sGGn~d~d 289 (380)
T TIGR01127 247 LERHKILAEGA-GAAGVAALLEQKV-D-VKGKKIAVVLSGGNIDLN 289 (380)
T ss_pred HHhcCeEechH-HHHHHHHHHhCcc-c-cCCCeEEEEeCCCCCCHH
Confidence 99999999997 5888999986422 2 357899999999997754
No 42
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=1.5e-42 Score=353.13 Aligned_cols=282 Identities=14% Similarity=0.115 Sum_probs=211.0
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAV 158 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~al 158 (444)
|+|||++ ++++++.+ |.+||+|+|++| | +||||+|++.+++.+++++|.++||++ |+||||+|+
T Consensus 27 G~TPl~~---l~~l~~~~---------g~~i~~K~E~~n-p-tGS~KdR~a~~~i~~a~~~g~~~vV~a--SsGN~G~al 90 (352)
T PRK06721 27 GNTPLIP---LLNISKQL---------GIQLYGKYEGAN-P-TGSFKDRGMVMAVAKAKEEGSEAIICA--STGNTSASA 90 (352)
T ss_pred CCCCeeE---chhhHHHh---------CCeEEEEecCCC-C-ccchHHHHHHHHHHHHHHCCCCEEEEE--CCcHHHHHH
Confidence 9999999 88887665 468999999998 7 899999999999999999999999986 679999999
Q ss_pred HHHHHHhCCeEEEEecCCC-CccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 159 AVSCAERGLKSHLLLRGEQ-PQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 159 A~aaa~~Gl~~~i~~~~~~-~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
|++|+.+|++|+||||... ++ .+..+++.||| |+.++.+ |+++.+. +++++
T Consensus 91 A~~aa~~G~~~~vvvp~~~~~~---~k~~~~~~~GA~V~~~~~~-~~~~~~~----a~~~~------------------- 143 (352)
T PRK06721 91 AAYAARLGMKCIIVIPEGKIAH---GKLAQAVAYGAEIISIEGN-FDDALKA----VRNIA------------------- 143 (352)
T ss_pred HHHHHHCCCcEEEEECCCCCCH---HHHHHHHHcCCEEEEECCC-HHHHHHH----HHHHH-------------------
Confidence 9999999999999999864 33 35567899998 9999863 5543222 11111
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHH--
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA-- 314 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~-- 314 (444)
+.. ..+++ +..||...+||.++++||++|+ + ..||+||+|+||||+++|++.++
T Consensus 144 ------------------~~~-~~~~~--~~~n~~~~~G~~t~~~Ei~eq~--~-~~~D~ivv~vG~GG~l~G~~~G~~~ 199 (352)
T PRK06721 144 ------------------AEE-PITLV--NSVNPYRIEGQKTAAFEICDQL--Q-RAPDVLAIPVGNAGNITAYWKGFCE 199 (352)
T ss_pred ------------------HhC-Cceec--cCCCchhhhhhhhHHHHHHHHh--C-CCCCEEEEeCCchHHHHHHHHHHHH
Confidence 111 12333 3458888999999999999996 2 26999999999999999877665
Q ss_pred --HhcC-CCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccc--cceeeeecccCCeEEecChHHHHHH
Q 013383 315 --ICLG-LPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDG--EIVHWVERCRPRKFGNVFEGEIEAC 389 (444)
Q Consensus 315 --~~~g-~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~v~d~e~~~a~ 389 (444)
+..+ +.++|||||+++++.............+++.++. ..+.. ..+...+.+.+..+.|+|+|+++++
T Consensus 200 ~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~-------~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~ 272 (352)
T PRK06721 200 YEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPETIATAIRI-------GNPASWSYAVEAAEQSHGEIDMVSDEEILHAY 272 (352)
T ss_pred HHHhcCCCCCeEEEEecCCCChHhhCCcCCCCCceeecccc-------CCCCCHHHHHHHHHhcCCEEEEECHHHHHHHH
Confidence 3445 8899999999886542211100000111111111 00100 1122245577889999999999999
Q ss_pred HHHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCCc
Q 013383 390 HRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTL 435 (444)
Q Consensus 390 ~~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~~ 435 (444)
+++++++||++||+| |+++++++++.++ .+.++++||+||||+..
T Consensus 273 ~~la~~eGi~vepss-gaalaa~~~~~~~~~~~~~~~Vv~v~~g~g~ 318 (352)
T PRK06721 273 RLLAKSEGVFAEPGS-NASLAGVMKHVQSGKIKKGETVVAVLTGNGL 318 (352)
T ss_pred HHHHHhcCcccCchH-HHHHHHHHHHHHcCCCCCCCeEEEEeCCCCc
Confidence 999999999999985 8999999998764 36678899999999763
No 43
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=2.3e-42 Score=349.64 Aligned_cols=283 Identities=13% Similarity=0.114 Sum_probs=216.2
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC--CeEEEeCcccchHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV--TDLVTCGGCQSAHAT 156 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~--~~Vvt~G~s~GNhg~ 156 (444)
++|||++ ++++++.+ |.+||+|+|++| | +||||+|++.+++.++.++|. ++||++ |+||||+
T Consensus 22 ~~TPl~~---~~~l~~~~---------g~~l~~K~E~~n-p-tGS~K~R~a~~~v~~a~~~g~~~~~vv~~--SsGN~g~ 85 (338)
T PRK06608 22 HLTPIVH---SESLNEML---------GHEIFFKVESLQ-K-TGAFKVRGVLNHLLELKEQGKLPDKIVAY--STGNHGQ 85 (338)
T ss_pred cCCCccc---hHhHHHHh---------CCEEEEEeCCCC-C-CCCcHHHHHHHHHHHhhhhcCcCCeEEEE--CCCHHHH
Confidence 8999999 88888765 468999999998 7 899999999999999999887 688875 6799999
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHH
Q 013383 157 AVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLT 235 (444)
Q Consensus 157 alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~ 235 (444)
|+|++|+.+|++|+||||...++. +..+++.||+ |+.++. ++ +..+. ++
T Consensus 86 alA~~a~~~G~~~~vv~p~~~~~~---k~~~l~~~GA~V~~~~~--~~---~~~~~-a~--------------------- 135 (338)
T PRK06608 86 AVAYASKLFGIKTRIYLPLNTSKV---KQQAALYYGGEVILTNT--RQ---EAEEK-AK--------------------- 135 (338)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHH---HHHHHHhCCCEEEEECC--HH---HHHHH-HH---------------------
Confidence 999999999999999999887653 4567899998 998864 22 22111 11
Q ss_pred hhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHH
Q 013383 236 AQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAI 315 (444)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~ 315 (444)
+ .. .++.|++|.. .||....|+.+++.||++|. ++ .||+||+|+|||||++|++.+++
T Consensus 136 ----------------~-~~-~~~~~~~~~~-~~~~~~~g~~t~a~Ei~~q~--~~-~~D~vv~~vG~GGt~~Gi~~~~k 193 (338)
T PRK06608 136 ----------------E-DE-EQGFYYIHPS-DSDSTIAGAGTLCYEALQQL--GF-SPDAIFASCGGGGLISGTYLAKE 193 (338)
T ss_pred ----------------H-HH-hCCCEEcCCC-CCHHHhccHHHHHHHHHHhc--CC-CcCEEEEeechhHHHHHHHHHHH
Confidence 1 11 1235655543 46888889999999999995 32 69999999999999999999999
Q ss_pred hcCCCCeEEEEeccCChhHHHHHHHH-H------HHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHH
Q 013383 316 CLGLPWEVTAIALVDTIDGYKQQEKN-L------ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 388 (444)
Q Consensus 316 ~~g~~~~vigV~~~~~~~~~~~~~~~-l------~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a 388 (444)
..++.++|+|||+++++..+.+...+ . ...+.+.++ .+.+....+.+.+. .++.+.|+|+|++++
T Consensus 194 ~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~-------~~~~~~~~~~~~~~-~d~~v~Vsd~e~~~a 265 (338)
T PRK06608 194 LISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLK-------TLSVSARTFEYLKK-LDDFYLVEEYEIYYW 265 (338)
T ss_pred hcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccC-------CCCCCHHHHHHHHh-CCCEEEECHHHHHHH
Confidence 99999999999999876543321111 0 001111111 11122223343343 577899999999999
Q ss_pred HHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchh
Q 013383 389 CHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFG 439 (444)
Q Consensus 389 ~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~ 439 (444)
++++++++|+++||+ +|+++++++++.++ ..++++||+|+||||.+...
T Consensus 266 ~~~l~~~~gi~veps-saa~laa~~~~~~~-~~~~~~Vv~v~tgg~~d~~~ 314 (338)
T PRK06608 266 TAWLTHLLKVICEPS-SAINMVAVVNWLKT-QSKPQKLLVILSGGNIDPIL 314 (338)
T ss_pred HHHHHHHcCcEEchH-HHHHHHHHHhhchh-hcCCCeEEEEeCCCccCHHH
Confidence 999999999999997 78999999987654 34688999999999976644
No 44
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=8e-42 Score=340.29 Aligned_cols=278 Identities=18% Similarity=0.104 Sum_probs=210.2
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC----CeEEEeCcccchH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~----~~Vvt~G~s~GNh 154 (444)
|+|||++ +++ ...+ |.+||+|+|++| | +||||+|++.+++..+++.|. ++||+. |+|||
T Consensus 6 g~TPl~~---~~~-~~~~---------g~~i~~K~E~~n-p-tGS~K~R~a~~~l~~a~~~g~~~~g~~vv~a--SsGN~ 68 (298)
T TIGR01139 6 GNTPLVR---LNR-IEGC---------NANVFVKLEGRN-P-SGSVKDRIALNMIWDAEKRGLLKPGKTIVEP--TSGNT 68 (298)
T ss_pred CCCceEE---ccc-cCCC---------CceEEEEEcccC-C-CCcchHHHHHHHHHHHHHcCCCCCCCEEEEe--CCChh
Confidence 8999999 777 3332 579999999998 7 899999999999999999987 668764 67999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHH
Q 013383 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEAS 233 (444)
Q Consensus 155 g~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~ 233 (444)
|+|+|++|+++|++|+||||+..++. +..+++.||| |+.++.. +... +..+ .|++
T Consensus 69 g~alA~~a~~~Gl~~~i~vp~~~~~~---k~~~~~~~GA~v~~~~~~-~~~~-~~~~-~a~~------------------ 124 (298)
T TIGR01139 69 GIALAMVAAARGYKLILTMPETMSIE---RRKLLKAYGAELVLTPGA-EGMK-GAIA-KAEE------------------ 124 (298)
T ss_pred HHHHHHHHHHcCCeEEEEeCCccCHH---HHHHHHHcCCEEEEECCC-CCHH-HHHH-HHHH------------------
Confidence 99999999999999999999987653 4557899998 9999864 4311 1111 1111
Q ss_pred HHhhhhhccccccccccccccccCCcEEEecCCCccHHH-HHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHH
Q 013383 234 LTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGL 312 (444)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~-~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~ 312 (444)
+.++.+..|+++.++.||.+ ..||.+++.||.+|+ ++ .||+||+|+|+||+++|++.
T Consensus 125 -------------------~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~--~~-~~d~vv~~vG~Gg~~~Gi~~ 182 (298)
T TIGR01139 125 -------------------IAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDT--DG-KLDAFVAGVGTGGTITGVGE 182 (298)
T ss_pred -------------------HHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHHh--CC-CCCEEEEecchhHhHHHHHH
Confidence 12223344666777778874 678999999999996 32 59999999999999999999
Q ss_pred HHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHH
Q 013383 313 GAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRI 392 (444)
Q Consensus 313 ~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~l 392 (444)
+|+++++++||+|||+.+++..+... .. ....+.++.+ .+ ...+.....+..+.|+|+|++++++++
T Consensus 183 ~~~~~~~~~~vi~Ve~~~~~~~~~~~-~~--~~~~~gl~~~-------~~---~~~~~~~~~d~~~~V~d~e~~~a~~~l 249 (298)
T TIGR01139 183 VLKEQKPNIKIVAVEPAESPVLSGGK-PG--PHKIQGIGAG-------FI---PKNLNRSVIDEVITVSDEEAIETARRL 249 (298)
T ss_pred HHHhcCCCCEEEEEecCCCcccCCCC-CC--CCCCCCCCCC-------CC---CCccChhhCCEEEEECHHHHHHHHHHH
Confidence 99999999999999998874322110 00 0000011110 00 111223345678999999999999999
Q ss_pred HHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCC
Q 013383 393 AQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (444)
Q Consensus 393 a~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~ 434 (444)
++++||++||+ +|+++++++++.++ +.++++||+|+||+-
T Consensus 250 ~~~~gi~~~ps-sga~laa~~~~~~~-~~~~~~vv~v~~d~G 289 (298)
T TIGR01139 250 AAEEGILVGIS-SGAAVAAALKLAKR-PEPDKLIVVILPSTG 289 (298)
T ss_pred HHhcCceEccc-HHHHHHHHHHHHHh-cCCCCEEEEEECCCC
Confidence 99999999998 79999999988654 456789999999864
No 45
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.9e-42 Score=373.77 Aligned_cols=347 Identities=14% Similarity=0.098 Sum_probs=245.5
Q ss_pred CCCCceeecccchhhHHHHHHh--hhhcccCCC----ccccccccccccccccCCCCCccccccccccccCCCccccCCC
Q 013383 33 NSPQGICNVRMSGEELLSRLLD--RKWALTSPD----SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDED 106 (444)
Q Consensus 33 ~~~~~~~~~~~~~e~~~~~l~~--~~w~~~~~~----~~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g 106 (444)
|..-|---.++-||+||++|.+ ..|.....| ++++.+...| ++++|||++ +++|++.+ |
T Consensus 221 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~grpTPL~~---~~~Ls~~~---------G 285 (610)
T PRK13803 221 AGRYGTFGGAYVPETLMANLQELQESYTKIIKSNEFQKTFKRLLQNY---AGRPTPLTE---AKRLSDIY---------G 285 (610)
T ss_pred CCcccCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCCccee---HHHHHHhh---------C
Confidence 3344555678899999999998 677655444 5566665555 789999999 99988765 4
Q ss_pred CeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhH
Q 013383 107 RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNL 186 (444)
Q Consensus 107 ~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~ 186 (444)
.+||+||||+| | +||||+|.+.+.+..|+++|++++|+.. ++||||+|+|++|+++|++|+||||..+++.+..|+.
T Consensus 286 ~~IylK~E~ln-p-tGS~K~r~al~~~~~a~~~g~~~vi~e~-gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~ 362 (610)
T PRK13803 286 ARIYLKREDLN-H-TGSHKINNALGQALLAKRMGKTRIIAET-GAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVE 362 (610)
T ss_pred CEEEEEeCCCC-C-cccHHHHHHHHHHHHHHHcCCCEEEEec-ChHHHHHHHHHHHHHcCCcEEEEEeCCcccchhhHHH
Confidence 69999999999 5 7899999988888888999998888632 3589999999999999999999999876554556778
Q ss_pred HHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecC
Q 013383 187 ISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNE 265 (444)
Q Consensus 187 ~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~ 265 (444)
+|+.||| |+.|+.+.....+...++ ++ .|+. +.....|+++.
T Consensus 363 ~m~~~GA~Vi~v~~~~~~~~~a~~~a-~~---------~~~~---------------------------~~~~~~y~~~~ 405 (610)
T PRK13803 363 RMKLLGANVIPVLSGSKTLKDAVNEA-IR---------DWVA---------------------------SVPDTHYLIGS 405 (610)
T ss_pred HHHHCCCEEEEECCCCCCHHHHHHHH-HH---------HHHH---------------------------hCCCcEEEeCC
Confidence 8999998 999986432222221111 11 1210 11123344433
Q ss_pred C-Ccc--HHHH-HHHHHHHHHHHHhHH--cCCCCcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCChh------
Q 013383 266 G-AGD--AVAL-LGVFRLLQYLSQDHL--LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTID------ 333 (444)
Q Consensus 266 g-~~n--p~~~-~G~~t~~~Ei~~q~~--~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~~------ 333 (444)
. +.+ |..+ .|+.+++.||.+|+. .+ ..||+||+|+|||||++|++.+|+ .+++++|||||+.+...
T Consensus 406 ~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g-~~pD~vV~~vGgGg~~~Gi~~~f~-~~~~v~iigVE~~g~~~~~~~~~ 483 (610)
T PRK13803 406 AVGPHPYPEMVAYFQSVIGEEAKEQLKEQTG-KLPDAIIACVGGGSNAIGIFYHFL-DDPSVKLIGVEAGGKGVNTGEHA 483 (610)
T ss_pred cCCCCCcHHHHHHHhhHHHHHHHHHHHHhhC-CCCCEEEEEeCcCHhHHHHHHHHh-hCCCceEEEEecCCCCccccccc
Confidence 2 112 4444 477889999999983 24 369999999999999999999996 47899999999987521
Q ss_pred -HHHHHHHHHHHHHH--------------HHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHHHhCC
Q 013383 334 -GYKQQEKNLISEFK--------------RLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGI 398 (444)
Q Consensus 334 -~~~~~~~~l~~~~~--------------~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~~eGI 398 (444)
.+........++.. .++.. +...+.+++..+.+.+...+..+.|+|+|+++++++|++.+||
T Consensus 484 a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sia~---gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi 560 (610)
T PRK13803 484 ATIKKGRKGVLHGSMTYLMQDENGQILEPHSISA---GLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGI 560 (610)
T ss_pred chhhcCCeeeeccceeeeecccCCcccCCceeec---cCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCC
Confidence 11111000001000 01111 1112223333334444444567889999999999999999999
Q ss_pred cccccccHHHHHHHHHHhhhcCCCCCeEEEEEcC-CCccchhhh
Q 013383 399 LVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFGLA 441 (444)
Q Consensus 399 ~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TG-G~~~l~~~~ 441 (444)
+++|+ ||.++|+++++.. .+.++++||+++|| |+.++..+.
T Consensus 561 ~~~~s-sa~alA~~~~~~~-~~~~~~~Vvv~lsG~G~kd~~~~~ 602 (610)
T PRK13803 561 IPALE-SSHALAYLKEGRK-KFKKKDIVIVNLSGRGDKDIPTLK 602 (610)
T ss_pred ccCcH-HHHHHHHHHHhch-hcCCCCeEEEEeCCCCcCCHHHHH
Confidence 99997 6899999998753 46668899999999 898876543
No 46
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=1.9e-42 Score=349.58 Aligned_cols=292 Identities=14% Similarity=0.104 Sum_probs=213.9
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHh-cCCCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLED-HIVTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~-~g~~~Vvt~G~s~GNhg~a 157 (444)
++|||++ ++++++.+ |.+||+|+|++| | +||||||.+.+++..+.+ .+.++||++ |+||||+|
T Consensus 26 ~~TPlv~---~~~l~~~~---------g~~i~~K~E~~n-p-tGS~KdR~a~~~i~~~~~~~~~~~vv~~--SsGN~g~a 89 (333)
T PRK08638 26 RKTPLPR---SNYLSERC---------KGEIFLKLENMQ-R-TGSFKIRGAFNKLSSLTDAEKRKGVVAC--SAGNHAQG 89 (333)
T ss_pred cCCCcee---chhhHHhh---------CCeEEEEeccCC-c-cCCcHHHHHHHHHHhccHHhcCCeEEEe--CCcHHHHH
Confidence 8999999 88887654 469999999998 7 899999999999987654 556788886 45999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+.+|++|+||||...++. +..+++.||| |+.++. .+++..+. +++++
T Consensus 90 lA~~aa~~G~~~~iv~p~~~~~~---k~~~~~~~GA~V~~~~~-~~~~~~~~----a~~~a------------------- 142 (333)
T PRK08638 90 VALSCALLGIDGKVVMPKGAPKS---KVAATCGYGAEVVLHGD-NFNDTIAK----VEEIV------------------- 142 (333)
T ss_pred HHHHHHHcCCCEEEEeCCCCcHH---HHHHHHHcCCEEEEECc-CHHHHHHH----HHHHH-------------------
Confidence 99999999999999999987643 4567899998 988875 35432221 11111
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
+..+..|+. +..||...+|+.++++||++|+ .+||+||+|+||||+++|++.+|++
T Consensus 143 ------------------~~~g~~~~~--~~~~~~~~~g~~t~a~Ei~~q~----~~~d~vv~~vG~Gg~~~Gv~~~lk~ 198 (333)
T PRK08638 143 ------------------EEEGRTFIP--PYDDPKVIAGQGTIGLEILEDL----WDVDTVIVPIGGGGLIAGIAVALKS 198 (333)
T ss_pred ------------------HhcCCEEcC--cCCCcchhccccHHHHHHHhhc----CCCCEEEEEeChhHHHHHHHHHHHH
Confidence 111223333 3457888999999999999996 2589999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHHH-H-HHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKNL-I-SEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~l-~-~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~ 394 (444)
.+++++|+|||+++++..+.+...+. . .....+++.++ ....+....+.+++++.+..+.|+|+++++++++|++
T Consensus 199 ~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl---~~~~p~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~ 275 (333)
T PRK08638 199 INPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGC---DVSRPGNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQ 275 (333)
T ss_pred hCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccc---cCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 99999999999998754332211100 0 00000111110 1111111222334567888999999999999999999
Q ss_pred HhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhhh
Q 013383 395 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLA 441 (444)
Q Consensus 395 ~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~~ 441 (444)
++|+++||+ +|+++|++.........++++||+|+||||.++..+.
T Consensus 276 ~~gi~~e~s-gA~~~Aa~~~~~~~~~~~~~~vv~v~~Ggn~~~~~~~ 321 (333)
T PRK08638 276 RNKVVTEGA-GALATAALLSGKLDQYIQNKKVVAIISGGNVDLSRVS 321 (333)
T ss_pred HcCCeechh-HHHHHHHHHhCCcccccCCCcEEEEECCCCCCHHHHH
Confidence 999999996 5777877775322222357899999999999887654
No 47
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=1.6e-42 Score=353.02 Aligned_cols=295 Identities=15% Similarity=0.111 Sum_probs=218.1
Q ss_pred ccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEe
Q 013383 68 QIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTC 147 (444)
Q Consensus 68 ~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~ 147 (444)
.+++.. |+|||++ ++++++.+ |.+||+|+|++| | +||||||++.+++..+++.|.++||++
T Consensus 24 ~~~l~~-----g~TPl~~---~~~l~~~~---------g~~i~~K~E~~n-p-tGSfKdR~a~~~l~~a~~~g~~~iv~a 84 (353)
T PRK07409 24 VVTLGE-----GNTPLIP---APNLSELL---------GVEVYVKYEGLN-P-TGSFKDRGMTMAVTKAKEEGAKAVICA 84 (353)
T ss_pred cccCCC-----CCCCEEE---chhhHHHh---------CCeEEEEecCCC-C-ccchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 355554 9999999 88877654 469999999998 7 899999999999999999999999985
Q ss_pred CcccchHHHHHHHHHHHhCCeEEEEecCCC-CccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccc
Q 013383 148 GGCQSAHATAVAVSCAERGLKSHLLLRGEQ-PQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVW 225 (444)
Q Consensus 148 G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~-~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w 225 (444)
|+||||+++|++|+.+|++|+||||... +.. +...++.||+ |+.++. .|+++.+.. +++
T Consensus 85 --SsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~---k~~~~~~~GA~Vi~~~~-~~~~~~~~a----~~l--------- 145 (353)
T PRK07409 85 --STGNTSASAAAYAARAGLKAFVLIPEGKIALG---KLAQAVMYGAEIIQIDG-NFDDALEIV----REL--------- 145 (353)
T ss_pred --CCcHHHHHHHHHHHHcCCCEEEEEcCCCCchh---hHHHHHhcCCEEEEECC-CHHHHHHHH----HHH---------
Confidence 6799999999999999999999999863 432 4456799998 999986 355433321 111
Q ss_pred hhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChh
Q 013383 226 CNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGT 305 (444)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGg 305 (444)
.+..+ .++++ ..||..++|+.++++||++|+ + ..||+||+|+||||
T Consensus 146 ----------------------------~~~~~-~~~~~--~~n~~~~~g~~t~~~EI~~q~--~-~~~d~iv~~vG~GG 191 (353)
T PRK07409 146 ----------------------------AEKYP-VTLVN--SVNPYRIEGQKTAAFEIVDAL--G-DAPDYHCIPVGNAG 191 (353)
T ss_pred ----------------------------HHhcC-ceecC--CCCchhhhhHHHHHHHHHHHh--C-CCCCEEEEeCCChH
Confidence 11112 33333 358999999999999999996 3 26999999999999
Q ss_pred hHHHHHHHHHhcCC------CCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEE
Q 013383 306 TAVGLGLGAICLGL------PWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFG 379 (444)
Q Consensus 306 t~aGl~~~~~~~g~------~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 379 (444)
+++|++.+++.+.+ .+||+|||++++...+..........+.+.++.+ .+..+ ...+.+++++.+..+.
T Consensus 192 ~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~-~~~~~----~~~~~~~~~~~~~~v~ 266 (353)
T PRK07409 192 NITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIG-NPASW----DKAVAARDESGGLIDA 266 (353)
T ss_pred HHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCCCCcceeeeeecC-CCCCH----HHHHHHHHHhCCEEEE
Confidence 99999999987632 4899999998864322111000001111111110 01000 0112234556677899
Q ss_pred ecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcC-CCccchhh
Q 013383 380 NVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTG-GTLGMFGL 440 (444)
Q Consensus 380 v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TG-G~~~l~~~ 440 (444)
|+|+|++++++++++++||++||+ +|+++++++++.++ .+.++++||+|+|| |+......
T Consensus 267 Vsd~e~~~a~~~l~~~egi~v~ps-sa~alaa~~~~~~~~~~~~~~~VV~i~tg~g~k~~~~~ 328 (353)
T PRK07409 267 VTDEEILEAYRLLARKEGVFCEPA-SAASVAGLLKAIRAGKIPEGSTVVCTLTGNGLKDPDTA 328 (353)
T ss_pred ECHHHHHHHHHHHHHhCCceeCch-HHHHHHHHHHHHHcCCCCCCCcEEEEecCccccchHHH
Confidence 999999999999999999999998 79999999987654 25568899999999 88776544
No 48
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=8.3e-42 Score=357.37 Aligned_cols=302 Identities=15% Similarity=0.122 Sum_probs=217.1
Q ss_pred hhhccc--CCCccccccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhh
Q 013383 55 RKWALT--SPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDAL 132 (444)
Q Consensus 55 ~~w~~~--~~~~~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~ 132 (444)
+.|.+. .|... ..+++.+ |+|||++ ++ +.+.+ |.+||+|+|++| | +||||||++.++
T Consensus 45 ~~wry~~~lp~~~-~~v~l~~-----G~TPLv~---~~-~~~~~---------g~~l~~K~E~~n-P-tGSfKdR~a~~~ 103 (442)
T PRK05638 45 GVWRYKELLPQVK-KIISLGE-----GGTPLIR---AR-ISEKL---------GENVYIKDETRN-P-TGSFRDRLATVA 103 (442)
T ss_pred ChhhhhhhCCCcC-CccccCC-----CCCcEEc---cc-chHHh---------CCeEEEEeCCCC-C-CCChHHHHHHHH
Confidence 567543 33322 2345554 9999999 63 44444 468999999998 7 899999999999
Q ss_pred HHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHH
Q 013383 133 LPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKS 211 (444)
Q Consensus 133 l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~ 211 (444)
+.+|++.|.++||+. |+||||+|+|++|+++|++|+||||.+.+. .+..+++.||| |+.|+. .|++..+.
T Consensus 104 i~~a~~~g~~~vv~a--SsGN~g~alA~~aa~~G~~~~i~vp~~~~~---~k~~~~~~~GA~vi~v~~-~~~~~~~~--- 174 (442)
T PRK05638 104 VSYGLPYAANGFIVA--SDGNAAASVAAYSARAGKEAFVVVPRKVDK---GKLIQMIAFGAKIIRYGE-SVDEAIEY--- 174 (442)
T ss_pred HHHHHHcCCCEEEEe--CCChHHHHHHHHHHHcCCCEEEEEeCCCCH---HHHHHHHhcCcEEEEECC-CHHHHHHH---
Confidence 999999999999984 679999999999999999999999997754 45668899998 999985 45543221
Q ss_pred HhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCC
Q 013383 212 YANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGR 291 (444)
Q Consensus 212 ~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~ 291 (444)
++++ .+ ...+|+++ +..||...+|++++++||++|+
T Consensus 175 -a~~~-------------------------------------~~-~~~~~~~~-~~~np~~~eG~~t~a~Ei~eq~---- 210 (442)
T PRK05638 175 -AEEL-------------------------------------AR-LNGLYNVT-PEYNIIGLEGQKTIAFELWEEI---- 210 (442)
T ss_pred -HHHH-------------------------------------HH-hCCeEecC-CCCChhHhhhHHHHHHHHHHHH----
Confidence 1111 11 12456555 4568999999999999999996
Q ss_pred CCcCEEEEeCCChhhHHHHHHHHHhcCC------CCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCccccccc
Q 013383 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL------PWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGE 365 (444)
Q Consensus 292 ~~~d~vvv~vGtGgt~aGl~~~~~~~g~------~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~ 365 (444)
.||+||+|+|+||+++|++++|+++.+ .++|+|||+++............ .....+++.+. ....+.....
T Consensus 211 -~pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~-~~~~~t~a~gl-~~~~p~~~~~ 287 (442)
T PRK05638 211 -NPTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNK-TKCNETKALGL-YVKNPVMKEY 287 (442)
T ss_pred -CcCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCC-CCCCCceeeeE-eeCCCCCHHH
Confidence 399999999999999999999998753 47999999987644332211100 00001111111 0000111112
Q ss_pred ceeeeecccCCeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCCc
Q 013383 366 IVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTL 435 (444)
Q Consensus 366 ~~~l~~~~~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~~ 435 (444)
.+.+++++.+..+.++|+++.++++.++ ++||++||+ +|+++|+++++.++ .+.++++||+|+||++.
T Consensus 288 ~~~~i~~~~g~~~~v~d~~i~~a~~~l~-~eGi~~eps-saaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~ 356 (442)
T PRK05638 288 VSEAIKESGGTAVVVNEEEIMAGEKLLA-KEGIFAELS-SAVVMPALLKLGEEGYIEKGDKVVLVVTGSGL 356 (442)
T ss_pred HHHHHHHhCCEEEEECHHHHHHHHHHHH-hcCceecch-HHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCC
Confidence 3345666666566667777777777776 589999998 79999999998765 36678999999999774
No 49
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2e-41 Score=365.88 Aligned_cols=347 Identities=16% Similarity=0.108 Sum_probs=237.8
Q ss_pred ceeecccchhhHHHHHHh--hhhcccCCC----ccccccccccccccccCCCCCccccccccccc----cCCCccccCCC
Q 013383 37 GICNVRMSGEELLSRLLD--RKWALTSPD----SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPF----LGDDMIMRDED 106 (444)
Q Consensus 37 ~~~~~~~~~e~~~~~l~~--~~w~~~~~~----~~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~----~g~~~~~~~~g 106 (444)
|---.++-||+||++|.+ ..|.....| +++..+...| +|++|||++ ++++++. +|. +
T Consensus 280 g~~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~---iGrpTPL~~---~~~Ls~~l~~~~G~-------g 346 (695)
T PRK13802 280 GQFGGRYVPEALITALDELERVYTQAKADPEFHKELATLNQRY---VGRPSPLTE---APRFAERVKEKTGL-------D 346 (695)
T ss_pred CCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCCceeE---chhhhhhhHhhcCC-------C
Confidence 445568899999999998 667655555 4555555555 888999999 8887643 442 4
Q ss_pred CeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEE-EeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhh
Q 013383 107 RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLV-TCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYN 185 (444)
Q Consensus 107 ~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vv-t~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~ 185 (444)
++||+||||+| | +||||+|.+.+.+..|+++|++++| ++| +||||+|+|++|+++|++|+||||..++..+..|+
T Consensus 347 ~~IylK~E~lN-p-TGS~KdR~Al~~i~~A~~~G~~~~Ivets--sGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv 422 (695)
T PRK13802 347 ARVFLKREDLN-H-TGAHKINNALGQALLVKRMGKTRVIAETG--AGQHGVATATVCAMLGLKCRIYMGQIDARRQALNV 422 (695)
T ss_pred ceEEEEEccCC-C-cCCcHHHHHHHHHHHHHHcCCCCEEEEEC--cHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHH
Confidence 79999999999 5 7999999999999999999987555 554 58999999999999999999999987655555688
Q ss_pred HHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEec
Q 013383 186 LISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVN 264 (444)
Q Consensus 186 ~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip 264 (444)
.+|++||| |+.|+.+.....+...++ ++ .|.. +.....|+++
T Consensus 423 ~~mr~lGAeVi~v~~g~~~l~~Ai~ea-~~---------~~~~---------------------------~~~~~~y~i~ 465 (695)
T PRK13802 423 ARMRMLGAEVVEVTLGDRILKDAINEA-LR---------DWVT---------------------------NVKDTHYLLG 465 (695)
T ss_pred HHHHHcCCEEEEECCCCCcHHHHHHHH-HH---------HHHH---------------------------hcCCceEeec
Confidence 89999998 999985432111111111 11 1221 1112345554
Q ss_pred CCC-ccH--H-HHHHHHHHHHHHHHhHHc--CCCCcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCChhHHHHH
Q 013383 265 EGA-GDA--V-ALLGVFRLLQYLSQDHLL--GRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQ 338 (444)
Q Consensus 265 ~g~-~np--~-~~~G~~t~~~Ei~~q~~~--g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~~~~~~~ 338 (444)
... .+| . ...|+.+++.||++|+.. |...||+||+|||||||++|++.+|+. .+.+||||||+++........
T Consensus 466 ~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h 544 (695)
T PRK13802 466 TVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKH 544 (695)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccch
Confidence 431 233 3 347888999999999731 212699999999999999999999975 689999999998853211111
Q ss_pred HHHHH---------HHHHHHh-cc--------ccc--cCCcccccccceeeeecccCCe--EEecChHHHHHHHHHHHHh
Q 013383 339 EKNLI---------SEFKRLF-GF--------LLK--KSSLNEVDGEIVHWVERCRPRK--FGNVFEGEIEACHRIAQLT 396 (444)
Q Consensus 339 ~~~l~---------~~~~~~i-~~--------~~~--~~~~~~~~~~~~~l~~~~~~~~--~~v~d~e~~~a~~~la~~e 396 (444)
...+. ++....+ .. ..+ +...+.+++.. .+.++ .++. ..|+|+|+++++++|+++|
T Consensus 545 ~~~~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~-~~l~~-~~rv~~~~vtD~eal~a~~~La~~E 622 (695)
T PRK13802 545 AIRFAPGTGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEH-AWLKD-IGRVNYSWATDEEAMNAFKDLCETE 622 (695)
T ss_pred hhhhhhccCCccccccceeecccCCCCCccCccccccccCCCCCCchh-HHHHh-cCCeEEEEECHHHHHHHHHHHHHHc
Confidence 01111 1100000 00 000 00111111111 11111 3444 7899999999999999999
Q ss_pred CCcccccccHHHHHHHHHHhhhcCCC----CCeEEEEEcC-CCccchhhhh
Q 013383 397 GILVDPVYTLAAWEMATLLSDEKLKQ----DADVVMLHTG-GTLGMFGLAQ 442 (444)
Q Consensus 397 GI~vEP~ysaaa~aal~~l~~~~~~~----g~~Vv~i~TG-G~~~l~~~~~ 442 (444)
||+++|. |+.+++++++++++ +++ +++||+++|| |..++....+
T Consensus 623 GIipa~e-S~hAva~a~~~a~~-~~~~~~~~~~Vv~~lsg~GdKdl~~~~~ 671 (695)
T PRK13802 623 GIIPAIE-SSHAVAGAYKAAAD-LKAKGYEHPVMIVNISGRGDKDMNTAGK 671 (695)
T ss_pred Cccccch-HHHHHHHHHHHHHh-cccccCCCCEEEEEECCCCcCCHHHHHH
Confidence 9999997 78999999998753 322 5589999999 7777766543
No 50
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=2.6e-41 Score=345.59 Aligned_cols=302 Identities=15% Similarity=0.087 Sum_probs=213.0
Q ss_pred cccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHH
Q 013383 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHAT 156 (444)
Q Consensus 77 ~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~ 156 (444)
++.+|||++ ++++++.+| +.+||+|+|++| | +||||+|.+...+..+.++|.+.+|+.+ |+||||+
T Consensus 31 ~~~~TPL~~---l~~l~~~~g--------~~~l~~K~E~~n-p-tgS~K~R~a~~~~~~a~~~g~~~vv~~~-ssGN~g~ 96 (365)
T cd06446 31 VGRPTPLYR---AKRLSEYLG--------GAKIYLKREDLN-H-TGAHKINNALGQALLAKRMGKKRVIAET-GAGQHGV 96 (365)
T ss_pred CCCCCCcee---hHHHHHhhC--------CceEEEEeccCC-C-ccchhHHHHHHHHHHHHHcCCCeEEEec-CchHHHH
Confidence 457999999 999887664 479999999998 6 7899999999999889999999998843 4599999
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCc--chhhHHHHHHHHhhhhhcCCCCccchhhhHHHH
Q 013383 157 AVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEAS 233 (444)
Q Consensus 157 alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~--~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~ 233 (444)
|+|++|+++|++|+||||...+..+..|..+++.||| |+.++.. .+.+ .....++..+
T Consensus 97 alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~---~~~~a~~~~~---------------- 157 (365)
T cd06446 97 ATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKD---AISEAIRDWV---------------- 157 (365)
T ss_pred HHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHH---HHHHHHHHHH----------------
Confidence 9999999999999999998644323346667899998 9999853 1222 1111011000
Q ss_pred HHhhhhhccccccccccccccccCCcEEEecCC-CccH---HHHHHHHHHHHHHHHhHHc-CCCCcCEEEEeCCChhhHH
Q 013383 234 LTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG-AGDA---VALLGVFRLLQYLSQDHLL-GRKRAIKFVVDAGTGTTAV 308 (444)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g-~~np---~~~~G~~t~~~Ei~~q~~~-g~~~~d~vvv~vGtGgt~a 308 (444)
....+.+|+++.. +.+| ....|+.++++||++|+.. +...||+||+|+|||||++
T Consensus 158 --------------------~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~ 217 (365)
T cd06446 158 --------------------TNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAA 217 (365)
T ss_pred --------------------hccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHH
Confidence 0111224433211 1122 3467889999999999742 1136999999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEeccCChhHHHHHHHHHHH-------HH--------------HHHhccccccCCcccccccce
Q 013383 309 GLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLIS-------EF--------------KRLFGFLLKKSSLNEVDGEIV 367 (444)
Q Consensus 309 Gl~~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~-------~~--------------~~~i~~~~~~~~~~~~~~~~~ 367 (444)
|++++++. .+.++||||++++++.........+.. ++ ..++..+ +..+.+....+
T Consensus 218 Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~a~g---l~~~~~~~~~~ 293 (365)
T cd06446 218 GLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAG---LDYPGVGPEHA 293 (365)
T ss_pred HHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcceecchhhhccccccCCCCCccccccc---ccCCCCCHHHH
Confidence 99999976 468999999998865432110000000 00 0000000 01111112222
Q ss_pred eeeecccCCeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcC-CCccc
Q 013383 368 HWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGM 437 (444)
Q Consensus 368 ~l~~~~~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TG-G~~~l 437 (444)
.+.+++.++.|.|+|++++++++++++++||++|| |+|+++++++++.++ .+++++||+|+|| |+.++
T Consensus 294 ~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~ep-ssgaalAa~~~~~~~-~~~~~~Vv~i~~g~G~k~~ 362 (365)
T cd06446 294 YLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPAL-ESSHAIAYAIKLAKK-LGKEKVIVVNLSGRGDKDL 362 (365)
T ss_pred HHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCc-cchHHHHHHHHHHHh-cCCCCeEEEEeCCCCcccc
Confidence 34456678899999999999999999999999999 589999999998764 3567899999999 88764
No 51
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=1.2e-41 Score=352.26 Aligned_cols=285 Identities=14% Similarity=0.086 Sum_probs=215.3
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHH-hcCCCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~-~~g~~~Vvt~G~s~GNhg~a 157 (444)
++|||++ ++++++.+ |.+||+|+|++| | +||||+|.+.+++..+. +.+.++||++ |+||||+|
T Consensus 22 ~~TPl~~---~~~l~~~~---------g~~l~~K~E~~n-p-tGS~KdR~a~~~i~~~~~~~~~~~vv~a--SsGN~g~a 85 (403)
T PRK07334 22 LRTPCVH---SRTLSQIT---------GAEVWLKFENLQ-F-TASFKERGALNKLLLLTEEERARGVIAM--SAGNHAQG 85 (403)
T ss_pred CCCCccc---hHHHHHhh---------CCeEEEEeccCC-C-CCCchHHHHHHHHHhcCHHHhCCcEEEE--CCcHHHHH
Confidence 8999999 88887655 468999999998 7 89999999999988754 3455678875 56999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+.+|++|+||||...|+. +..+++.||| |+.++. .+++..+. ++++
T Consensus 86 lA~~a~~~G~~~~iv~p~~~~~~---k~~~~~~~GA~v~~~~~-~~~~~~~~----a~~l-------------------- 137 (403)
T PRK07334 86 VAYHAQRLGIPATIVMPRFTPTV---KVERTRGFGAEVVLHGE-TLDEARAH----AREL-------------------- 137 (403)
T ss_pred HHHHHHHcCCCEEEEECCCCCHH---HHHHHHHcCCEEEEECc-CHHHHHHH----HHHH--------------------
Confidence 99999999999999999987653 4567899998 988875 35432221 2211
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
.+.. +.|++ .+..||....|+.+++.||++|+ +.||+||+|+|||||++|++.+++.
T Consensus 138 -----------------~~~~-~~~~~-~~~~~~~~~~g~~t~~~Ei~~q~----~~~d~vv~~vG~GG~~~Gi~~~lk~ 194 (403)
T PRK07334 138 -----------------AEEE-GLTFV-HPYDDPAVIAGQGTVALEMLEDA----PDLDTLVVPIGGGGLISGMATAAKA 194 (403)
T ss_pred -----------------HHhc-CCEec-CCCCCHHHHHhHHHHHHHHHhcC----CCCCEEEEecCHHHHHHHHHHHHHH
Confidence 1122 22332 33457888999999999999995 3689999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHHHH----HHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKNLI----SEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRI 392 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~l~----~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~l 392 (444)
+++++||+|||+++++..+........ ..+.+.++ ...+....+.+++.+.+..+.|+|+|+++++++|
T Consensus 195 ~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~-------~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l 267 (403)
T PRK07334 195 LKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIA-------VKQPGQLTLEIVRRLVDDILLVSEADIEQAVSLL 267 (403)
T ss_pred hCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceec-------CCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHH
Confidence 999999999999987654432111000 01111111 1111122334566778889999999999999999
Q ss_pred HHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhh
Q 013383 393 AQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGL 440 (444)
Q Consensus 393 a~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~ 440 (444)
++++|+++||+ +|+++++++++.+. .++++||+|+||||.+..-+
T Consensus 268 ~~~~gi~v~~s-~a~~~aa~~~~~~~--~~~~~vv~i~~ggn~d~~~l 312 (403)
T PRK07334 268 LEIEKTVVEGA-GAAGLAALLAYPER--FRGRKVGLVLSGGNIDTRLL 312 (403)
T ss_pred HHhcCCEEech-HHHHHHHHHhCchh--cCCCeEEEEECCCCCCHHHH
Confidence 99999999996 68999999876442 35789999999999765433
No 52
>PLN00011 cysteine synthase
Probab=100.00 E-value=1.3e-41 Score=342.47 Aligned_cols=281 Identities=17% Similarity=0.093 Sum_probs=206.9
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcC-----CCeEEEeCcccch
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI-----VTDLVTCGGCQSA 153 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g-----~~~Vvt~G~s~GN 153 (444)
|+|||++ ++++.+.+ +++||+|+|++| | +||||+|++.+++..|++.| .++||++ |+||
T Consensus 16 g~TPl~~---l~~l~~~~---------g~~i~~K~E~~n-P-tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~a--SsGN 79 (323)
T PLN00011 16 GNTPMVY---LNNIVDGC---------VARIAAKLEMME-P-CSSVKDRIAYSMIKDAEDKGLITPGKSTLIEA--TAGN 79 (323)
T ss_pred CCCceEE---ccccCCCC---------CceEEEEecccC-C-ccccchHHHHHHHHHHHHcCCCCCCCcEEEEe--CCCh
Confidence 9999999 88876432 469999999998 7 89999999999999999988 5789974 7899
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHH
Q 013383 154 HATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (444)
Q Consensus 154 hg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~ 232 (444)
||+|+|++|+.+|++|+||||...++ .+..+++.||+ |+.++.. +... +..+. +++
T Consensus 80 ~g~alA~~a~~~G~~~~ivvp~~~~~---~k~~~i~~~GA~V~~~~~~-~~~~-~~~~~-a~~----------------- 136 (323)
T PLN00011 80 TGIGLACIGAARGYKVILVMPSTMSL---ERRIILRALGAEVHLTDQS-IGLK-GMLEK-AEE----------------- 136 (323)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCCH---HHHHHHHHcCCEEEEECCC-cChH-HHHHH-HHH-----------------
Confidence 99999999999999999999998764 35667899998 9988863 3211 11110 111
Q ss_pred HHHhhhhhccccccccccccccccCCcEEEecCCCccHHH-HHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHH
Q 013383 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (444)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~-~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~ 311 (444)
+.+..++ ++++.+..||.. ..||.+++.||++|. ++ .||+||+|+|||||++|++
T Consensus 137 --------------------l~~~~~~-~~~~~~~~n~~n~~~~~~t~~~EI~~q~--~~-~~D~iv~~vGtGGt~aGi~ 192 (323)
T PLN00011 137 --------------------ILSKTPG-GYIPQQFENPANPEIHYRTTGPEIWRDS--AG-KVDILVAGVGTGGTATGVG 192 (323)
T ss_pred --------------------HHHhCCC-eEEeccccCCccHHHHHHHHHHHHHHhc--CC-CCCEEEEeCCchHHHHHHH
Confidence 1122223 445555544432 237999999999995 32 6999999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHH
Q 013383 312 LGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHR 391 (444)
Q Consensus 312 ~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~ 391 (444)
.++++++++++|+|||++++.... .. . ....+.+.++.+ .+ ...+.....+..+.|+|++++++|++
T Consensus 193 ~~lk~~~~~~kvigVe~~~~~~~~-~~-~-~~~~~~~gl~~~-------~~---~~~~~~~~~d~~v~V~d~e~~~a~~~ 259 (323)
T PLN00011 193 KFLKEKNKDIKVCVVEPVESAVLS-GG-Q-PGPHLIQGIGSG-------II---PFNLDLTIVDEIIQVTGEEAIETAKL 259 (323)
T ss_pred HHHHhhCCCCEEEEEecCCCcccC-CC-C-CCCCCCCCCCCC-------CC---CcccChhhCCeEEEECHHHHHHHHHH
Confidence 999999999999999998864321 11 0 000111111111 11 11222344566889999999999999
Q ss_pred HHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEE-cCCCcc
Q 013383 392 IAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLH-TGGTLG 436 (444)
Q Consensus 392 la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~-TGG~~~ 436 (444)
+++++||++||+ +|+++++++++.+....++++||+|+ +||+--
T Consensus 260 l~~~~Gi~~~~s-sga~laaa~~~~~~~~~~~~~vv~i~~d~G~ky 304 (323)
T PLN00011 260 LALKEGLLVGIS-SGAAAAAALKVAKRPENAGKLIVVIFPSGGERY 304 (323)
T ss_pred HHHhcCCeEccc-HHHHHHHHHHHHHhccCCCCeEEEEECCCcccc
Confidence 999999999998 68999999987654323577888888 667643
No 53
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=2.6e-41 Score=338.50 Aligned_cols=285 Identities=14% Similarity=0.003 Sum_probs=210.2
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAV 158 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~al 158 (444)
++|||++ +++++.. +.+||+|+|++| | +||||+|.+.+++..+.+ +.++||+. |+||||+|+
T Consensus 22 ~~TPl~~---~~~l~~~----------~~~i~~K~E~~n-p-tGS~K~R~a~~~~~~~~~-~~~~vv~a--SsGN~g~a~ 83 (310)
T PRK08246 22 RRTPVLE---ADGAGFG----------PAPVWLKLEHLQ-H-TGSFKARGAFNRLLAAPV-PAAGVVAA--SGGNAGLAV 83 (310)
T ss_pred CCCCeee---ccccccC----------CCEEEEEECCCC-C-CCCCHHHHHHHHHHhhcc-cCCeEEEe--CCCHHHHHH
Confidence 8999999 8877632 468999999998 7 899999999888877666 66788875 569999999
Q ss_pred HHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhh
Q 013383 159 AVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQ 237 (444)
Q Consensus 159 A~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~ 237 (444)
|++|+.+|++|+||||...++. +..+++.||+ |+.++. .|++..+. ++++
T Consensus 84 A~~a~~~G~~~~iv~p~~~~~~---k~~~~~~~GA~V~~~~~-~~~~~~~~----a~~~--------------------- 134 (310)
T PRK08246 84 AYAAAALGVPATVFVPETAPPA---KVARLRALGAEVVVVGA-EYADALEA----AQAF--------------------- 134 (310)
T ss_pred HHHHHHcCCCEEEEECCCCcHH---HHHHHHHCCCEEEEeCC-CHHHHHHH----HHHH---------------------
Confidence 9999999999999999877643 4567899998 999886 35432221 1111
Q ss_pred hhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHhc
Q 013383 238 KSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICL 317 (444)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~~ 317 (444)
.+.. ..| .+.+..||....|+.++++||++|+ +.||+||+|+|+|||++|++.+++.
T Consensus 135 ----------------~~~~-g~~-~~~~~~n~~~i~g~~t~~~Ei~eq~----~~~D~iv~~vG~GG~~~Gi~~~~~~- 191 (310)
T PRK08246 135 ----------------AAET-GAL-LCHAYDQPEVLAGAGTLGLEIEEQA----PGVDTVLVAVGGGGLIAGIAAWFEG- 191 (310)
T ss_pred ----------------HHhc-CCE-eCCCCCChhhhcchHHHHHHHHHhc----CCCCEEEEecCccHHHHHHHHHhcC-
Confidence 1111 223 3345568888899999999999995 3699999999999999999999963
Q ss_pred CCCCeEEEEeccCChhHHHHHHHHH-HHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHHHh
Q 013383 318 GLPWEVTAIALVDTIDGYKQQEKNL-ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLT 396 (444)
Q Consensus 318 g~~~~vigV~~~~~~~~~~~~~~~l-~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~~e 396 (444)
.++|+|||+++++..+.+...+. ...-...+... ....+.++...+.+++.+.+..+.|+|+|++++++++++++
T Consensus 192 --~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~e 267 (310)
T PRK08246 192 --RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAAD--SLGARRVGEIAFALARAHVVTSVLVSDEAIIAARRALWEEL 267 (310)
T ss_pred --CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceec--cccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHc
Confidence 48999999999765443221110 00000000000 00111122334456677889999999999999999999999
Q ss_pred CCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchh
Q 013383 397 GILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFG 439 (444)
Q Consensus 397 GI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~ 439 (444)
||++||+ +|++++++++... .+.++++||+|+||||.+..-
T Consensus 268 gi~~e~s-~aa~lAa~~~~~~-~~~~~~~vv~i~~g~n~d~~~ 308 (310)
T PRK08246 268 RLAVEPG-AATALAALLSGAY-VPAPGERVAVVLCGANTDPAT 308 (310)
T ss_pred CceeehH-HHHHHHHHHhCCc-cccCCCeEEEEECCCCCChhh
Confidence 9999997 6889999876432 234678999999999998653
No 54
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=7.8e-42 Score=319.44 Aligned_cols=286 Identities=15% Similarity=0.123 Sum_probs=222.2
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHH-hcCCCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~-~~g~~~Vvt~G~s~GNhg~a 157 (444)
-.||.+.++.++... |.++|+|+|.+|. +|+||.|++.|.+..+. ++..+.|||. |+||||+|
T Consensus 24 hkTpVlTS~~ln~~~------------g~~vfFKcE~fQK--tGaFKfRGAlNav~~l~~ek~~kgvith--SSGNHaqA 87 (323)
T KOG1251|consen 24 HKTPVLTSENLNEKV------------GRHVFFKCENFQK--TGAFKFRGALNAVSSLKAEKRAKGVITH--SSGNHAQA 87 (323)
T ss_pred ccCceechhhHHHHh------------hhheEeehhhhhh--ccceehhhhHHHHHHhhHhhhcCceEee--cCCcHHHH
Confidence 478999844444432 6799999999995 78999999999888776 6677899998 56999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+..|++|+|+||.++|..+ +.-++.||+ |+++++. -++|+.+.+ ++.
T Consensus 88 lalaAk~~giPa~IVvP~~AP~~K---v~a~~~Yga~ii~~e~~-~~sRE~va~----~lt------------------- 140 (323)
T KOG1251|consen 88 LALAAKILGIPATIVVPKDAPICK---VAATRGYGANIIFCEPT-VESRESVAK----DLT------------------- 140 (323)
T ss_pred HHHHHHhcCCCeEEEecCCChHHH---HHHHHhcCceEEEecCc-cchHHHHHH----HHH-------------------
Confidence 999999999999999999998754 455799998 9999874 355665532 221
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
++.+...+.|++. |....|..|++.|+++|. +..|.+|||+||||+++|++.+.+.
T Consensus 141 ------------------ee~g~~~i~Py~~--p~vIaGqgTiA~ElleqV----g~iDalfvpvgGGGllSgvAlaa~~ 196 (323)
T KOG1251|consen 141 ------------------EETGYYLIHPYNH--PSVIAGQGTIALELLEQV----GEIDALFVPVGGGGLLSGVALAAKS 196 (323)
T ss_pred ------------------HhcCcEEeCCCCC--cceeeccchHHHHHHHhh----CccceEEEeecCcchhhHHHHHHhc
Confidence 1222344555554 444445555999999997 3789999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHH-H-----HHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKN-L-----ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~-l-----~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~ 390 (444)
+.|+++||+|||++..+.+.+..++ + ..++++.... ..+++.+|.+++++.++.+.|+|+|+.++++
T Consensus 197 l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~-------~~lG~~t~pIir~~vddi~Tv~e~Ei~~~lk 269 (323)
T KOG1251|consen 197 LKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRT-------SHLGPLTWPIIRDLVDDILTVSEDEIKEALK 269 (323)
T ss_pred cCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhh-------ccccccchHHHHHHhhhheeecHHHHHHHHH
Confidence 9999999999998877655554332 1 1233332221 1244567778899999999999999999999
Q ss_pred HHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhhh
Q 013383 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLA 441 (444)
Q Consensus 391 ~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~~ 441 (444)
.++++..+.+||+ .+.+||+++....+. ..+++.+|+||||.++..++
T Consensus 270 ~~~ermK~~vEPT-a~lgfAavl~~k~~~--~~K~igIiLsGGNVD~~~~~ 317 (323)
T KOG1251|consen 270 LIWERMKVVVEPT-AALGFAAVLSHKFAL--NIKRIGIILSGGNVDLNSWA 317 (323)
T ss_pred HHHHHHheeeccc-hhHHHHHHHhhhHHh--ccCceEEEEeCCcccccchh
Confidence 9999999999997 578999998764322 37899999999999987643
No 55
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=5.1e-41 Score=339.57 Aligned_cols=275 Identities=16% Similarity=0.073 Sum_probs=202.6
Q ss_pred ccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEe
Q 013383 68 QIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTC 147 (444)
Q Consensus 68 ~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~ 147 (444)
.+++.+ |+|||++ + .+||+|+|.+| | +||||||.+.+++..|+++|.++|++.
T Consensus 51 ~vslge-----G~TPLv~---~-----------------~~l~~K~E~~n-P-TGSfKDRga~~~i~~a~~~g~~~vv~a 103 (338)
T PRK06450 51 FISLGE-----GRTPLIK---K-----------------GNIWFKLDFLN-P-TGSYKDRGSVTLISYLAEKGIKQISED 103 (338)
T ss_pred CCCCCC-----CCCCcee---c-----------------CCEEEEecCCC-C-cCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 456655 9999998 2 36999999999 7 899999999999999999999999986
Q ss_pred CcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccch
Q 013383 148 GGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWC 226 (444)
Q Consensus 148 G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~ 226 (444)
|+||||+|+|++|+++|++|+||||...+.. +..+++.||| |+.|+.. |++..++ +
T Consensus 104 --SsGN~g~slA~~aa~~G~~~~i~vP~~~~~~---k~~~i~~~GA~vi~v~~~-~~~~~~~----a------------- 160 (338)
T PRK06450 104 --SSGNAGASIAAYGAAAGIEVKIFVPETASGG---KLKQIESYGAEVVRVRGS-REDVAKA----A------------- 160 (338)
T ss_pred --CCcHHHHHHHHHHHHcCCCEEEEEcCCCCHH---HHHHHHHcCCEEEEECCC-HHHHHHH----H-------------
Confidence 6799999999999999999999999987653 4567899998 9999863 5432111 0
Q ss_pred hhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhh
Q 013383 227 NEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTT 306 (444)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt 306 (444)
+.. ..+ ...+..||...+|++|+++||++|+ ++..||+||+|+|+||+
T Consensus 161 ----------------------------~~~-g~~-~~~~~~np~~ieG~kTia~EI~eql--~~~~pD~vvvpvG~Ggl 208 (338)
T PRK06450 161 ----------------------------ENS-GYY-YASHVLQPQFRDGIRTLAYEIAKDL--DWKIPNYVFIPVSAGTL 208 (338)
T ss_pred ----------------------------Hhc-CeE-eccCCCCccHHHHHHHHHHHHHHHc--CCCCCCEEEEECCchHH
Confidence 011 212 2233358999999999999999995 44469999999999999
Q ss_pred HHHHHHHHHhcCC------CCeEEEEeccCChhHHHHHHHH-HH-HHHHHHhccccccCCcccccccceeeeecccCCeE
Q 013383 307 AVGLGLGAICLGL------PWEVTAIALVDTIDGYKQQEKN-LI-SEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKF 378 (444)
Q Consensus 307 ~aGl~~~~~~~g~------~~~vigV~~~~~~~~~~~~~~~-l~-~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 378 (444)
++|++++|+++.+ .+||++||+++........... .. ..-..+++.++ ....+......++++++. +..+
T Consensus 209 l~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l-~~~~p~~~~~~~~~i~~~-g~~v 286 (338)
T PRK06450 209 LLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADAL-VSTRPFLLDYMVKALSEY-GECI 286 (338)
T ss_pred HHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeee-ecCCCCCHHHHHHHHHhc-CcEE
Confidence 9999999998643 4799999999865433221100 00 00001111111 000000111223445555 7789
Q ss_pred EecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCC
Q 013383 379 GNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (444)
Q Consensus 379 ~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~ 434 (444)
.|+|+|+++++++|++ +||++||+ +|+++|+++++ ++++||+|+||..
T Consensus 287 ~V~d~ei~~a~~~La~-~Gi~veps-saaalAa~~~l------~~~~vv~vltG~g 334 (338)
T PRK06450 287 VVSDNEIVEAWKELAK-KGLLVEYS-SATVYAAYKKY------SVNDSVLVLTGSG 334 (338)
T ss_pred EECHHHHHHHHHHHHH-cCCEEChh-HHHHHHHHHHC------CCCCEEEEeCCCC
Confidence 9999999999999986 79999998 68999999875 2578999999953
No 56
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=6.3e-41 Score=338.90 Aligned_cols=272 Identities=14% Similarity=0.046 Sum_probs=207.4
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCC-eEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVT-DLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~-~Vvt~G~s~GNhg~a 157 (444)
++|||++ ++.+ +||+|+|++| | +||||+|++.+++..+.+.+.. .||++ |+||||+|
T Consensus 38 ~~TPL~~---~~~l---------------~v~lK~E~~n-p-tGSfK~RgA~~~l~~a~~~~~~~~VV~a--SsGN~G~a 95 (349)
T PRK08813 38 SPTPLHY---AERF---------------GVWLKLENLQ-R-TGSYKVRGALNALLAGLERGDERPVICA--SAGNHAQG 95 (349)
T ss_pred CCCCeEE---CCCC---------------cEEEEecCCC-C-cCCCHHHHHHHHHHHHHHcCCCCeEEEE--CCCHHHHH
Confidence 8999999 5432 3999999999 6 8999999999999999888864 67875 67999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+.+|++|+||||...++. +...++.||+ |+.++. .|++..+. |+++
T Consensus 96 lA~aa~~~Gi~~~IvvP~~~~~~---K~~~i~~~GAeVv~~g~-~~~~a~~~----a~~l-------------------- 147 (349)
T PRK08813 96 VAWSAYRLGVQAITVMPHGAPQT---KIAGVAHWGATVRQHGN-SYDEAYAF----AREL-------------------- 147 (349)
T ss_pred HHHHHHHcCCCEEEEEcCCCCHH---HHHHHHHcCCEEEEECC-CHHHHHHH----HHHH--------------------
Confidence 99999999999999999988754 4456799998 988875 46543322 2221
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
.+.. ..|+++ ...||...+|+.|++.||++| .||+||+|+|+||+++|++.++++
T Consensus 148 -----------------a~~~-g~~~v~-~~~np~~i~G~~Tig~EI~e~------~pD~VvvpvGgGGliaGia~~lk~ 202 (349)
T PRK08813 148 -----------------ADQN-GYRFLS-AFDDPDVIAGQGTVGIELAAH------APDVVIVPIGGGGLASGVALALKS 202 (349)
T ss_pred -----------------HHhc-CCEEcC-ccCChHHHHHHHHHHHHHHcC------CCCEEEEEeCccHHHHHHHHHHhc
Confidence 1111 234443 345799999999999999987 489999999999999999999985
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHHH-----HHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKNL-----ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHR 391 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~l-----~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~ 391 (444)
+.++|||||+++.+....+..... ...+++.++. ..++...+.+..++.++.+.|+|+|+.+++++
T Consensus 203 --~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~-------~~p~~~~~~i~~~~vd~vv~Vsd~ei~~a~~~ 273 (349)
T PRK08813 203 --QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKV-------KIPGFLTRRLCSSLLDDVVIVREAELRETLVR 273 (349)
T ss_pred --CCCEEEEEEECCCchHHHHHcCCCcccCCCCceeccccc-------CCcchhHHHHHHHhCCeEEEECHHHHHHHHHH
Confidence 468999999999765433221000 0112222211 11222344556677888999999999999999
Q ss_pred HHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhhh
Q 013383 392 IAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLA 441 (444)
Q Consensus 392 la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~~ 441 (444)
|++++|+++||+ +|+++|+++++ ++++|++|+||||+++..+.
T Consensus 274 l~~~~gl~vE~a-ga~alAa~~~~------~~~~v~~vlsGgN~d~~~~~ 316 (349)
T PRK08813 274 LALEEHVIAEGA-GALALAAGRRV------SGKRKCAVVSGGNIDATVLA 316 (349)
T ss_pred HHHHcCcEEEEc-HHHHHHHHHHh------CCCCEEEEECCCCCCHHHHH
Confidence 999999999997 68999998752 36799999999999886543
No 57
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=1.4e-40 Score=331.11 Aligned_cols=268 Identities=14% Similarity=0.089 Sum_probs=202.6
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC----CeEEEeCcccchH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~----~~Vvt~G~s~GNh 154 (444)
|+|||++ ++++++.. |.+||+|+|++| | +||||+|.+.+++.++++.|. ++||+. |+|||
T Consensus 11 g~TPl~~---~~~l~~~~---------g~~i~~K~E~~n-p-tGS~K~R~a~~~~~~a~~~g~~~~g~~vv~a--SsGN~ 74 (296)
T PRK11761 11 GNTPLVK---LQRLPPDR---------GNTILAKLEGNN-P-AGSVKDRPALSMIVQAEKRGEIKPGDTLIEA--TSGNT 74 (296)
T ss_pred CCCceEe---ccccccCC---------CCEEEEEEcccC-C-CCCchhHHHHHHHHHHHHcCCCCCCCEEEEe--CCChH
Confidence 9999999 77776543 569999999998 7 899999999999999999887 679885 67999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCc-chhhHHHHHHHHhhhhhcCCCCccchhhhHHH
Q 013383 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (444)
Q Consensus 155 g~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~ 232 (444)
|+|+|++|+.+|++|+||||+..++. +..+++.||| |+.++.. .+.+..+ .|+++
T Consensus 75 g~alA~~a~~~G~~~~i~~p~~~~~~---k~~~~~~~GA~v~~~~~~~~~~~~~~----~a~~l---------------- 131 (296)
T PRK11761 75 GIALAMIAAIKGYRMKLIMPENMSQE---RRAAMRAYGAELILVPKEQGMEGARD----LALQM---------------- 131 (296)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHH---HHHHHHHcCCEEEEeCCCCChHHHHH----HHHHH----------------
Confidence 99999999999999999999987643 5567899998 9999862 2332111 12211
Q ss_pred HHHhhhhhccccccccccccccccCCcEEEecCCCccHHHH-HHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHH
Q 013383 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (444)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~-~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~ 311 (444)
.+.....|+ .+..|+... .||.+++.||++|+ + ..+|+||+|+||||+++|++
T Consensus 132 ---------------------~~~~~~~~~--~~~~n~~~~~~~~~t~~~Ei~eq~--~-~~~d~iv~~vG~Gg~~~Gi~ 185 (296)
T PRK11761 132 ---------------------QAEGEGKVL--DQFANPDNPLAHYETTGPEIWRQT--E-GRITHFVSSMGTTGTIMGVS 185 (296)
T ss_pred ---------------------HhccCCEec--CCCCChhhHHHHhhchHHHHHHhc--C-CCCCEEEecCCcHHHHHHHH
Confidence 122222232 333455543 36789999999995 2 25899999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHH
Q 013383 312 LGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHR 391 (444)
Q Consensus 312 ~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~ 391 (444)
.+++++++.+||+|||++++... .+ ++. .+.. .. .. .+..+..++.+.|+|+|+++++++
T Consensus 186 ~~lk~~~~~~kvigVep~~~~~i---------~g----~~~--~~~~--~~-~~--~~~~~~vd~~v~V~d~e~~~a~~~ 245 (296)
T PRK11761 186 RYLKEQNPAVQIVGLQPEEGSSI---------PG----IRR--WPEE--YL-PK--IFDASRVDRVLDVSQQEAENTMRR 245 (296)
T ss_pred HHHHHhCCCCEEEEEecCCCCcC---------cC----CCC--CCCC--cC-Cc--ccChhhCCEEEEECHHHHHHHHHH
Confidence 99999999999999999875321 00 010 0000 00 00 112345667899999999999999
Q ss_pred HHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCC
Q 013383 392 IAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (444)
Q Consensus 392 la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~ 434 (444)
|++++||++||+ +|+++++++++.++ . ++++||+|+|++-
T Consensus 246 l~~~~gi~ve~s-sga~laaa~~~~~~-~-~~~~vV~v~~d~g 285 (296)
T PRK11761 246 LAREEGIFCGVS-SGGAVAAALRIARE-N-PNAVIVAIICDRG 285 (296)
T ss_pred HHHHhCceEchh-HHHHHHHHHHHHHH-C-CCCeEEEEECCCC
Confidence 999999999997 68999999987654 2 5789999999854
No 58
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=6e-41 Score=352.04 Aligned_cols=284 Identities=13% Similarity=0.058 Sum_probs=211.1
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC----CeEEEeCcccchH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~----~~Vvt~G~s~GNh 154 (444)
|+|||++ ++++++.+ +++||+|+|++| | +||||+|++.+++.+|.+.|. ++||++ |+|||
T Consensus 10 ~~TPl~~---~~~l~~~~---------~~~i~~K~E~~n-p-tGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~--ssGN~ 73 (454)
T TIGR01137 10 GNTPLVR---LNKVSKGI---------KCELLAKCEFFN-P-GGSVKDRIALRMIEDAEASGRLKPGDTIIEP--TSGNT 73 (454)
T ss_pred CCCceEE---ccccCCCC---------CceEEEEEhhcC-C-CcchHHHHHHHHHHHHHHcCCCCCCCEEEEe--CCcHH
Confidence 8999999 88887643 468999999998 7 899999999999999999887 779986 67999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCc-chhhHHHHHHHHhhhhhcCCCCccchhhhHHH
Q 013383 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (444)
Q Consensus 155 g~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~ 232 (444)
|+|+|++|+.+|++|+||||...++. +..+++.||| |+.++.. .+++.+... ..|+
T Consensus 74 g~alA~~a~~~G~~~~iv~p~~~~~~---k~~~~~~~GA~v~~~~~~~~~~~~~~~~-~~a~------------------ 131 (454)
T TIGR01137 74 GIGLALVAAIKGYKCIIVLPEKMSNE---KVDVLKALGAEIVRTPTAAAFDSPESHI-GVAK------------------ 131 (454)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCcCHH---HHHHHHHCCCEEEEcCCccCCCchHHHH-HHHH------------------
Confidence 99999999999999999999877643 5567899998 9998853 133211111 1111
Q ss_pred HHHhhhhhccccccccccccccccCCcEEEecCCCccHHHH-HHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHH
Q 013383 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (444)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~-~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~ 311 (444)
++.+..+. ++++.++.||... .||.+++.||++|+ ++ .||+||+|+|||||++|++
T Consensus 132 -------------------~l~~~~~~-~~~~~~~~~~~~~~~~~~t~~~Ei~~q~--~~-~~d~vv~~vG~Gg~~~G~~ 188 (454)
T TIGR01137 132 -------------------RLVREIPG-AHILDQYNNPSNPLAHYDGTGPEILEQC--EG-KLDMFVAGAGTGGTITGIA 188 (454)
T ss_pred -------------------HHHHhCCC-cEecccCCChhhHHHHHHhhHHHHHHHh--CC-CCCEEEEecCchHHHHHHH
Confidence 11122223 3455666666643 58999999999996 22 6999999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhHHHHHHH--HHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHH
Q 013383 312 LGAICLGLPWEVTAIALVDTIDGYKQQEK--NLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEAC 389 (444)
Q Consensus 312 ~~~~~~g~~~~vigV~~~~~~~~~~~~~~--~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~ 389 (444)
.++++.++.++|+|||+++++........ .........++. + .....+.....++.+.|+|+++++++
T Consensus 189 ~~~~~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~---~~~~~~~~~~~d~~~~V~~~e~~~a~ 258 (454)
T TIGR01137 189 RYLKESNPKCRIVGADPEGSILAQPENLNKTGRTPYKVEGIGY-------D---FIPTVLDRKVVDEWIKTDDKESFKMA 258 (454)
T ss_pred HHHHhhCCCCEEEEEecCCCcccCCCcccCCCCCCccCCCCCC-------C---CCCCcCCchhCCeEEEECHHHHHHHH
Confidence 99999999999999999886421100000 000000000110 0 01112234556778999999999999
Q ss_pred HHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCC
Q 013383 390 HRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (444)
Q Consensus 390 ~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~ 434 (444)
+++++++||++||+ ||+++++++++.++.++++++||+|+|++-
T Consensus 259 ~~l~~~~gi~~~~s-sg~~~aa~~~~~~~~~~~~~~vv~~~~d~g 302 (454)
T TIGR01137 259 RRLIKEEGLLVGGS-SGSAVVAALKAAEDELTEDQVIVVLLPDSI 302 (454)
T ss_pred HHHHHHhCccCcHH-HHHHHHHHHHHHHhhcCCCCEEEEEECCCC
Confidence 99999999999998 799999999987545667889999999754
No 59
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=2.1e-40 Score=328.98 Aligned_cols=268 Identities=18% Similarity=0.135 Sum_probs=202.6
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC----CeEEEeCcccchH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~----~~Vvt~G~s~GNh 154 (444)
|+|||++ ++++++.. |.+||+|+|++| | +||||+|++.+++..|.+.|. ++||++ |+|||
T Consensus 7 g~TPl~~---~~~l~~~~---------g~~i~~K~E~~n-p-tGS~K~R~a~~~v~~a~~~g~~~~g~~vv~a--SsGN~ 70 (290)
T TIGR01138 7 GNTPLVR---LQRMGPEN---------GSEVWLKLEGNN-P-AGSVKDRPALSMIVEAEKRGEIKPGDVLIEA--TSGNT 70 (290)
T ss_pred CCCceEE---ccccccCC---------CCeEEEEEccCC-C-CccHHHHHHHHHHHHHHHcCCCCCCCEEEEE--CCChH
Confidence 8999999 88876543 569999999998 7 899999999999999999887 778885 67999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCc-chhhHHHHHHHHhhhhhcCCCCccchhhhHHH
Q 013383 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (444)
Q Consensus 155 g~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~ 232 (444)
|+|+|++|+++|++|+||||+..+.. +..+++.||+ |+.|+.. .++...+ .++++
T Consensus 71 g~alA~~a~~~G~~~~i~~p~~~~~~---k~~~~~~~GA~v~~v~~~~~~~~~~~----~a~~l---------------- 127 (290)
T TIGR01138 71 GIALAMIAALKGYRMKLLMPDNMSQE---RKAAMRAYGAELILVTKEEGMEGARD----LALEL---------------- 127 (290)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCCHH---HHHHHHHcCCEEEEeCCCCChHHHHH----HHHHH----------------
Confidence 99999999999999999999987643 4557899998 9998863 2332211 12221
Q ss_pred HHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHH-HHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHH
Q 013383 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (444)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~-G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~ 311 (444)
.+..+..|+ .+..|+.... ||.+++.||++|+ ++ .+|+||+|+|||||++|++
T Consensus 128 ---------------------~~~~~~~~~--~~~~~~~~~~~~~~t~~~Ei~~q~--~~-~~d~iv~~vG~Gg~~~Gv~ 181 (290)
T TIGR01138 128 ---------------------ANRGEGKLL--DQFNNPDNPYAHYTSTGPEIWQQT--GG-RITHFVSSMGTTGTIMGVS 181 (290)
T ss_pred ---------------------HHhCCCCCC--CccCCcccHHHHhHhHHHHHHHHc--CC-CCCEEEECCCchHHHHHHH
Confidence 112222332 2233443333 5789999999995 32 6899999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHH
Q 013383 312 LGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHR 391 (444)
Q Consensus 312 ~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~ 391 (444)
.+++++++++||+|||+.++.. . . .+ ..++.+..+ .. +.....++.+.|+|+|+++++++
T Consensus 182 ~~lk~~~~~~kvi~Vep~~~~~-~-~---g~-----~~~~~~~~~--------~~--~~~~~~d~~v~V~d~e~~~a~~~ 241 (290)
T TIGR01138 182 RFLKEQNPPVQIVGLQPEEGSS-I-P---GI-----RRWPTEYLP--------GI--FDASLVDRVLDIHQRDAENTMRE 241 (290)
T ss_pred HHHHHhCCCCEEEEEeCCCCCC-c-c---CC-----CCCCCCcCC--------cc--cChhhCcEEEEECHHHHHHHHHH
Confidence 9999999999999999988643 1 0 10 011111111 11 12344567899999999999999
Q ss_pred HHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCC
Q 013383 392 IAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (444)
Q Consensus 392 la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~ 434 (444)
|++++||++||+ +|+++++++++.++ + ++++||+|+|+.-
T Consensus 242 l~~~~gi~~g~s-sga~laa~~~~~~~-~-~~~~vv~v~~d~g 281 (290)
T TIGR01138 242 LAVREGIFCGVS-SGGAVAAALRLARE-L-PDAVVVAIICDRG 281 (290)
T ss_pred HHHHhCceEcHh-HHHHHHHHHHHHHH-C-CCCeEEEEECCCC
Confidence 999999999997 78999999987654 4 5689999999853
No 60
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=3.4e-40 Score=336.80 Aligned_cols=279 Identities=14% Similarity=0.065 Sum_probs=205.7
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcC-----CCeEEEeCcccch
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI-----VTDLVTCGGCQSA 153 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g-----~~~Vvt~G~s~GN 153 (444)
|+|||++ ++++.+.+ |++||+|+|++| | +||||+|++.++|.+|++.| .++||+. |+||
T Consensus 58 g~TPl~~---l~~l~~~~---------g~~I~~KlE~~n-P-tGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~a--SsGN 121 (368)
T PLN02556 58 GKTPLVY---LNKVTEGC---------GAYIAAKQEMFQ-P-TSSIKDRPALAMIEDAEKKNLITPGKTTLIEP--TSGN 121 (368)
T ss_pred CCCccEE---cccccccc---------CCEEEEEecccC-C-ccchHHHHHHHHHHHHHHcCCcCCCCCEEEEe--CCch
Confidence 9999999 88876433 579999999998 7 79999999999999999886 4678874 7899
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHH
Q 013383 154 HATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (444)
Q Consensus 154 hg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~ 232 (444)
||+|+|++|+.+|++|+||||...+. .+..+++.||| |+.++... .. ....+. ++
T Consensus 122 ~G~alA~~a~~~G~~~~ivvp~~~~~---~k~~~lr~~GA~Vi~~~~~~-~~-~~~~~~-a~------------------ 177 (368)
T PLN02556 122 MGISLAFMAAMKGYKMILTMPSYTSL---ERRVTMRAFGAELVLTDPTK-GM-GGTVKK-AY------------------ 177 (368)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCH---HHHHHHHHcCCEEEEECCCC-Cc-cHHHHH-HH------------------
Confidence 99999999999999999999988764 35667899998 99887421 10 011110 11
Q ss_pred HHHhhhhhccccccccccccccccCCcEEEecCCCccHHHH-HHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHH
Q 013383 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (444)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~-~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~ 311 (444)
++.+..+..| +..++.||... .||.+++.||++|. + ..+|+||+|+|||||++|++
T Consensus 178 -------------------~l~~~~~~~~-~~~q~~np~~~~~g~~ttg~EI~eq~--~-~~~D~vV~~vGtGGt~aGv~ 234 (368)
T PLN02556 178 -------------------ELLESTPDAF-MLQQFSNPANTQVHFETTGPEIWEDT--L-GQVDIFVMGIGSGGTVSGVG 234 (368)
T ss_pred -------------------HHHHhcCCCC-ccCCCCCHHHHHHHHHHHHHHHHHhc--C-CCCCEEEEcCCcchHHHHHH
Confidence 1111222333 34556789887 49999999999995 3 26999999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHH
Q 013383 312 LGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHR 391 (444)
Q Consensus 312 ~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~ 391 (444)
.++++.+++++|+|||++++.. +....... ..+ ..++.+. . ...+..++.++.+.|+|+|+++++++
T Consensus 235 ~~lk~~~p~~kVigVep~~~~~-~~~g~~~~-~~i-~g~g~~~-------~---p~~~~~~~~d~~v~Vsd~ea~~a~r~ 301 (368)
T PLN02556 235 KYLKSKNPNVKIYGVEPAESNV-LNGGKPGP-HHI-TGNGVGF-------K---PDILDMDVMEKVLEVSSEDAVNMARE 301 (368)
T ss_pred HHHHHhCCCCEEEEEeeCCCcc-ccCCCCCC-eee-eeccCCC-------C---ccccchhhCCeEEEECHHHHHHHHHH
Confidence 9999999999999999988643 11100000 000 0111110 0 11123456677999999999999999
Q ss_pred HHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCC
Q 013383 392 IAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (444)
Q Consensus 392 la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~ 434 (444)
|++++||++||+ +|+++++++++.+....++++||+|+++.-
T Consensus 302 l~~~eGi~vg~s-sgA~~~aal~~a~~~~~~~~~IV~v~~d~g 343 (368)
T PLN02556 302 LALKEGLMVGIS-SGANTVAALRLAKMPENKGKLIVTVHPSFG 343 (368)
T ss_pred HHHHcCCEEecC-HHHHHHHHHHHhhhccCCcCEEEEEECCCC
Confidence 999999999997 677676666765543335788999999843
No 61
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=1.2e-40 Score=344.00 Aligned_cols=298 Identities=13% Similarity=0.028 Sum_probs=212.9
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHH--hcCCC--------------
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE--DHIVT-------------- 142 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~--~~g~~-------------- 142 (444)
++|||++ ++++++.+| ..+||+|+|+++.| +||||+|+..+.+..+. +.+.+
T Consensus 43 ~~TPL~~---~~~l~~~~G--------~~~v~~K~E~~q~p-tgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (399)
T PRK08206 43 APTPLVA---LPDLAAELG--------VGSILVKDESYRFG-LNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEV 110 (399)
T ss_pred CCCCCcc---hHHHHHHhC--------CCcEEEecccCcCC-CCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHH
Confidence 8999999 888887764 25999999998547 89999999888776654 33321
Q ss_pred -------eEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhh
Q 013383 143 -------DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYAN 214 (444)
Q Consensus 143 -------~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~ 214 (444)
.||+ +|+||||+|+|++|+.+|++|+||||...++. +...++.||+ |+.|+. .|+++.+.. .
T Consensus 111 ~~~~~~~~vv~--aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~---k~~~i~~~GA~Vi~v~~-~~~~~~~~a----~ 180 (399)
T PRK08206 111 REKLGDITFAT--ATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEE---RVDAIRALGAECIITDG-NYDDSVRLA----A 180 (399)
T ss_pred HHhccCCEEEE--eCCcHHHHHHHHHHHHcCCCEEEEECCCCCHH---HHHHHHHcCCEEEEeCC-CHHHHHHHH----H
Confidence 3554 47899999999999999999999999987654 3446799998 999986 455432221 1
Q ss_pred hhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecC----CCc--cHHHHHHHHHHHHHHHHhHH
Q 013383 215 LVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNE----GAG--DAVALLGVFRLLQYLSQDHL 288 (444)
Q Consensus 215 ~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~----g~~--np~~~~G~~t~~~Ei~~q~~ 288 (444)
+++ +.. ..|+++. +.. +|....||.+++.||++|+.
T Consensus 181 ~~~-------------------------------------~~~-g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~ 222 (399)
T PRK08206 181 QEA-------------------------------------QEN-GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLK 222 (399)
T ss_pred HHH-------------------------------------HHc-CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHH
Confidence 111 111 2233321 222 37778999999999999974
Q ss_pred cCCCCcCEEEEeCCChhhHHHHHHHHHhcC--CCCeEEEEeccCChhHHHHHHHH-H--HHHHHHHhccccccCCccccc
Q 013383 289 LGRKRAIKFVVDAGTGTTAVGLGLGAICLG--LPWEVTAIALVDTIDGYKQQEKN-L--ISEFKRLFGFLLKKSSLNEVD 363 (444)
Q Consensus 289 ~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g--~~~~vigV~~~~~~~~~~~~~~~-l--~~~~~~~i~~~~~~~~~~~~~ 363 (444)
.....||+||+|+|+|||++|++.+++++. +.++|++||++++...+.+...+ . +.....+++.++ ....+.
T Consensus 223 ~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~~l~~s~~~g~~~~~~~~~~tia~gl---~~~~~~ 299 (399)
T PRK08206 223 EMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQADCLYQSAVDGKPVAVTGDMDTIMAGL---ACGEPN 299 (399)
T ss_pred hcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCchHHHHHHcCCcEEeCCCCCceeccC---CCCCcC
Confidence 111259999999999999999999999873 47899999999976543332111 0 000001122111 111222
Q ss_pred ccceeeeecccCCeEEecChHHHHHHHHHHH----HhCCcccccccHHHHHHHHHHhh----------hcCCCCCeEEEE
Q 013383 364 GEIVHWVERCRPRKFGNVFEGEIEACHRIAQ----LTGILVDPVYTLAAWEMATLLSD----------EKLKQDADVVML 429 (444)
Q Consensus 364 ~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~----~eGI~vEP~ysaaa~aal~~l~~----------~~~~~g~~Vv~i 429 (444)
...+.++++..+..+.|+|+|+++++++|++ ++||++||+ +|+++|+++++.+ ..+.++++||+|
T Consensus 300 ~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~veps-gAa~lAa~~~~~~~~~~~~~~~~~~i~~~~~Vv~i 378 (399)
T PRK08206 300 PLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGES-GAVGLGALAALMTDPDYQELREKLGLDEDSRVLLI 378 (399)
T ss_pred HHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecch-HHHHHHHHHHHHhcchhhHHHHhcCCCCCCEEEEE
Confidence 2345556777888999999999999999996 789999997 6899999986541 235568899999
Q ss_pred EcCCCccchhh
Q 013383 430 HTGGTLGMFGL 440 (444)
Q Consensus 430 ~TGG~~~l~~~ 440 (444)
+||||.+..-+
T Consensus 379 ltgG~~d~~~~ 389 (399)
T PRK08206 379 STEGDTDPDRY 389 (399)
T ss_pred ECCCCCCHHHH
Confidence 99999876543
No 62
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=2.9e-40 Score=339.93 Aligned_cols=304 Identities=14% Similarity=0.044 Sum_probs=208.3
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCC---eEEEeCcccchHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVT---DLVTCGGCQSAHA 155 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~---~Vvt~G~s~GNhg 155 (444)
|+|||++ ++++++.+ |.+||+|+|++| | +||||+|.+.+++.+|.+.|.. .+|+.. |+||||
T Consensus 52 g~TPLv~---~~~l~~~~---------g~~v~~KlE~~n-P-tGS~KdR~A~~~i~~a~~~g~~~~~g~Vvea-SSGN~g 116 (423)
T PLN02356 52 GNTPLIR---INSLSEAT---------GCEILGKCEFLN-P-GGSVKDRVAVKIIEEALESGQLFPGGVVTEG-SAGSTA 116 (423)
T ss_pred CCCceEE---Cccccccc---------CCEEEEEeccCC-C-CCCHHHHHHHHHHHHHHhCCccCCCCEEEEe-CCHHHH
Confidence 9999999 88877544 568999999998 7 8999999999999999887743 355532 679999
Q ss_pred HHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCC------cchhhHHH----HHHHHhhhhhcCCCCcc
Q 013383 156 TAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPR------THYAHRIE----MLKSYANLVAGNNGDVV 224 (444)
Q Consensus 156 ~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~------~~~~~~~~----~~~~~A~~~a~~~g~~~ 224 (444)
+|+|++|+.+|++|+||||...+.. +..+++.||| |+.|+. ..+..... ...+++++++.+++...
T Consensus 117 ~alA~~aa~~G~~~~ivvP~~~s~~---K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~ 193 (423)
T PLN02356 117 ISLATVAPAYGCKCHVVIPDDVAIE---KSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDG 193 (423)
T ss_pred HHHHHHHHHcCCcEEEEECCCCcHH---HHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 9999999999999999999988764 3457899998 998863 12211000 01112222222222222
Q ss_pred chhhhHHHHHHhhhhhcccccccccccccccc-------CCcEEEecCCCccHHH--HHHHHHHHHHHHHhHHcCCCCcC
Q 013383 225 WCNEIFEASLTAQKSRASCLGQMDAHKGIDNC-------RKKVLIVNEGAGDAVA--LLGVFRLLQYLSQDHLLGRKRAI 295 (444)
Q Consensus 225 w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~ip~g~~np~~--~~G~~t~~~Ei~~q~~~g~~~~d 295 (444)
|... .. | ....+..+. .++ ++++.+..||.. ..|.. ++.||++|+ + ..||
T Consensus 194 ~~~~--~~-~-------------~~~~~~~~~~~~~~~~~~~-~~~~~q~~n~~n~~ahg~g-Tg~EI~eQl--~-g~~D 252 (423)
T PLN02356 194 IHLE--KT-N-------------GCISEEEKENSLFSSSCTG-GFFADQFENLANFRAHYEG-TGPEIWEQT--Q-GNLD 252 (423)
T ss_pred cccc--cc-c-------------cccccccccccccccCCCC-cEecCccCCcchHHHHHhh-HHHHHHHhc--C-CCCC
Confidence 2210 00 0 000000000 022 345566677665 34444 599999995 3 2699
Q ss_pred EEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCChhH---------HHHHHHH-HH----HHHHHHhccccccCCccc
Q 013383 296 KFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDG---------YKQQEKN-LI----SEFKRLFGFLLKKSSLNE 361 (444)
Q Consensus 296 ~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~~~---------~~~~~~~-l~----~~~~~~i~~~~~~~~~~~ 361 (444)
+||+|+|||||++|+++++++++|+++|++||+.++... ..+...+ .+ ..+.+.++. .
T Consensus 253 ~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~-------~- 324 (423)
T PLN02356 253 AFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGI-------N- 324 (423)
T ss_pred EEEeCCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcC-------C-
Confidence 999999999999999999999999999999999876411 0000000 00 011111111 1
Q ss_pred ccccceeeeecccCCeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCC
Q 013383 362 VDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGG 433 (444)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG 433 (444)
..+..+.....++.+.|+|+|+++++++|++++||++||+ +|+++++++++.+. +.++++||+|+||.
T Consensus 325 --~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~S-saa~laaa~~la~~-~~~g~~VV~Il~d~ 392 (423)
T PLN02356 325 --RLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSS-SAMNCVGAVRVAQS-LGPGHTIVTILCDS 392 (423)
T ss_pred --CCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeEC-HHHHHHHHHHHHHH-hCCCCeEEEEECCC
Confidence 1122344556788999999999999999999999999997 79999999997653 55688999999994
No 63
>PLN02569 threonine synthase
Probab=100.00 E-value=3.1e-40 Score=346.81 Aligned_cols=284 Identities=14% Similarity=0.091 Sum_probs=211.0
Q ss_pred cCCCCCccccccccccc-cCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC-----CeEEEeCcccc
Q 013383 79 GGGPLGGISFLNNTCPF-LGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQS 152 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~-~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~-----~~Vvt~G~s~G 152 (444)
|+|||++ ++++.+. +|. .+||+|+|.+| | +||||||.+.+++..+.+.|. ..|++. |+|
T Consensus 132 G~TPLv~---~~~l~~~~~G~--------~~l~~K~E~~n-P-TGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~A--SSG 196 (484)
T PLN02569 132 GNSNLFW---AERLGKEFLGM--------NDLWVKHCGIS-H-TGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCA--STG 196 (484)
T ss_pred CCCceeE---hhhhhHhhcCC--------ccEEEEECCCC-C-CcCHHHHHHHHHHHHHHHhhhccCCccEEEEe--CCc
Confidence 9999999 8888765 542 48999999998 7 899999999999999888765 557764 679
Q ss_pred hHHHHHHHHHHHhCCeEEEEecCC-CCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhH
Q 013383 153 AHATAVAVSCAERGLKSHLLLRGE-QPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIF 230 (444)
Q Consensus 153 Nhg~alA~aaa~~Gl~~~i~~~~~-~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~ 230 (444)
|||+|+|++|+.+|++|+||||.. .+. .+..+++.||| |+.|++ .|++..+..+ ++
T Consensus 197 N~GaAlAayaa~~Gl~~~I~vP~~~~~~---~k~~qi~a~GA~Vi~v~g-~~d~a~~~a~----e~-------------- 254 (484)
T PLN02569 197 DTSAALSAYCAAAGIPSIVFLPADKISI---AQLVQPIANGALVLSIDT-DFDGCMRLIR----EV-------------- 254 (484)
T ss_pred HHHHHHHHHHHhcCCeEEEEEcCCCCCH---HHHHHHHhcCCEEEEECC-CHHHHHHHHH----HH--------------
Confidence 999999999999999999999986 442 34567899998 999986 4665433221 11
Q ss_pred HHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHH
Q 013383 231 EASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 310 (444)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl 310 (444)
.+.. ..|+++. .||...+|++|++.||++|+ ++..||+||+|+|+||+++|+
T Consensus 255 -----------------------~~~~-~~~~~n~--~Np~~ieG~kT~a~EI~eQl--~~~~pD~VvvPvG~Gg~l~Gi 306 (484)
T PLN02569 255 -----------------------TAEL-PIYLANS--LNSLRLEGQKTAAIEILQQF--DWEVPDWVIVPGGNLGNIYAF 306 (484)
T ss_pred -----------------------HHHc-CCEecCC--CCcchhHhHHHHHHHHHHHc--CCCCCCEEEEeCCchHHHHHH
Confidence 1111 2454443 38999999999999999995 543599999999999999999
Q ss_pred HHHHHhc---C---CCCeEEEEeccCChhHHHHHHHH---H-----HHHHHHHhccccccCCcccccccceeeeecccCC
Q 013383 311 GLGAICL---G---LPWEVTAIALVDTIDGYKQQEKN---L-----ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPR 376 (444)
Q Consensus 311 ~~~~~~~---g---~~~~vigV~~~~~~~~~~~~~~~---l-----~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 376 (444)
+++|+++ | ..+||++||++++...+.....+ . ..++++.++.+ .|..+ ...+..+++..+.
T Consensus 307 ~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi~i~-~P~~~----~~~l~al~~s~g~ 381 (484)
T PLN02569 307 YKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAIQIG-DPVSI----DRAVYALKESNGI 381 (484)
T ss_pred HHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhhccC-CCccH----HHHHHHHHHhCCE
Confidence 9999875 3 35799999999875433221111 0 01122222211 11110 1122334555565
Q ss_pred eEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCC
Q 013383 377 KFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGT 434 (444)
Q Consensus 377 ~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~ 434 (444)
.+.|+|+|+++++++ ++++||++||+ +|+++++++++.++ .+.++++||+|+||.-
T Consensus 382 ~v~VsDeEi~~a~~~-a~~~Gi~veps-sAaalAal~kl~~~g~i~~~~~VV~i~Tg~G 438 (484)
T PLN02569 382 VEEATEEELMDAQAE-ADKTGMFLCPH-TGVALAALKKLRASGVIGPTDRTVVVSTAHG 438 (484)
T ss_pred EEEECHHHHHHHHHH-HHHCCcEECch-HHHHHHHHHHHHHcCCCCCCCcEEEEeCCCc
Confidence 689999999999999 89999999998 79999999998765 3667889999999943
No 64
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=4e-40 Score=342.38 Aligned_cols=296 Identities=14% Similarity=0.090 Sum_probs=215.8
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHH-----HHhcCC------------
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPL-----LEDHIV------------ 141 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~-----a~~~g~------------ 141 (444)
++|||++ ++++++.+|... ....+.+||+|+|++| |.+||||+|++.+++.. +++.|.
T Consensus 74 ~~TPL~~---~~~l~~~~g~~~-~~~~~~~V~lK~E~~n-p~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~ 148 (441)
T PRK02991 74 IESPLVA---IPAMQKALEKEY-GQPISGRLLLKKDSHL-PISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLAS 148 (441)
T ss_pred cCCCcee---hHHHHHHhcccc-cCCcCceEEEEEcCCC-CCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcc
Confidence 9999999 777776553100 0000269999999999 54799999999888764 445563
Q ss_pred ---------CeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHH
Q 013383 142 ---------TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKS 211 (444)
Q Consensus 142 ---------~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~ 211 (444)
++||++ |+||||+|+|++|+.+|++|+||||...|.. +...++.||+ |+.++. .|+++.+.
T Consensus 149 ~~~~~~~~~~~VV~a--SsGN~G~alA~aA~~~G~~~tIvvP~~a~~~---K~~~ir~~GAeVi~~~~-~~~~a~~~--- 219 (441)
T PRK02991 149 PEFRQFFSQYSIAVG--STGNLGLSIGIMSAALGFKVTVHMSADARQW---KKDKLRSHGVTVVEYEG-DYGVAVEE--- 219 (441)
T ss_pred hhhhhhccCcEEEEE--CCcHHHHHHHHHHHHcCCCEEEEECCCCCHH---HHHHHHhCCCEEEEECC-CHHHHHHH---
Confidence 368875 6799999999999999999999999988764 4456899998 988886 46643322
Q ss_pred HhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHc-C
Q 013383 212 YANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLL-G 290 (444)
Q Consensus 212 ~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~-g 290 (444)
|+++ .+..+..|+++. ..+|....|+.|++.||++|+.. +
T Consensus 220 -A~~l-------------------------------------a~~~~~~~~~~~-~~~~~~iaG~~Tig~EI~eQl~~~~ 260 (441)
T PRK02991 220 -GRKA-------------------------------------AESDPNCYFIDD-ENSRTLFLGYAVAGLRLKAQLAEQG 260 (441)
T ss_pred -HHHH-------------------------------------HHhcCCeEeCCC-CCchhHHHhHHHHHHHHHHHhhhcc
Confidence 2211 111223444433 35677889999999999999741 1
Q ss_pred C----CCcCEEEEeCCChhhHHHHHHHHHhc-CCCCeEEEEeccCChhHHHHHHHHH------------HHHHHHHhccc
Q 013383 291 R----KRAIKFVVDAGTGTTAVGLGLGAICL-GLPWEVTAIALVDTIDGYKQQEKNL------------ISEFKRLFGFL 353 (444)
Q Consensus 291 ~----~~~d~vvv~vGtGgt~aGl~~~~~~~-g~~~~vigV~~~~~~~~~~~~~~~l------------~~~~~~~i~~~ 353 (444)
. ..||+||+|+|+||+++|++.+++++ ++.++||+||+++++..+.+...+. ..++++.++.
T Consensus 261 ~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~- 339 (441)
T PRK02991 261 IVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAV- 339 (441)
T ss_pred CccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcC-
Confidence 1 13789999999999999999999987 6889999999999765443321110 0123333322
Q ss_pred cccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-------cCC---CC
Q 013383 354 LKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-------KLK---QD 423 (444)
Q Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-------~~~---~g 423 (444)
..+....+.+++++.++.+.|+|++++++|++|++++||++||+ +|+++|+++++.+. .+. ++
T Consensus 340 ------~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS-~AaalAa~~~l~~~~~~~~~~~l~~~~~~ 412 (441)
T PRK02991 340 ------GRASGFVGRAMERLLDGVYTVSDETLYRLLGLLADTEGIRLEPS-ALAGMAGPVRVCASVAYLQRHGLSEQLKN 412 (441)
T ss_pred ------CCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceeeHH-HHHHHHHHHHHHhCHHHHHHcCCccccCC
Confidence 12223345667788899999999999999999999999999997 68999999876542 122 57
Q ss_pred CeEEEEEcCCCc
Q 013383 424 ADVVMLHTGGTL 435 (444)
Q Consensus 424 ~~Vv~i~TGG~~ 435 (444)
++||+|.|||+.
T Consensus 413 ~~vv~~~~gg~~ 424 (441)
T PRK02991 413 ATHLVWATGGSM 424 (441)
T ss_pred CEEEEEECCCCC
Confidence 899999999985
No 65
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=1.5e-39 Score=314.59 Aligned_cols=240 Identities=21% Similarity=0.214 Sum_probs=199.4
Q ss_pred CCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcC---CCeEEEeCcccchHHHH
Q 013383 81 GPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHI---VTDLVTCGGCQSAHATA 157 (444)
Q Consensus 81 TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g---~~~Vvt~G~s~GNhg~a 157 (444)
|||++ ++++++.. +.+||+|+|++| | +||||+|++.+++..+++.| .+.||++ |+||||.|
T Consensus 1 TPl~~---~~~l~~~~---------~~~l~~K~e~~~-p-tgS~K~R~a~~~l~~a~~~g~~~~~~vv~~--ssGN~g~a 64 (244)
T cd00640 1 TPLVR---LKRLSKLG---------GANIYLKLEFLN-P-TGSFKDRGALNLILLAEEEGKLPKGVIIES--TGGNTGIA 64 (244)
T ss_pred CCeeE---cccccccc---------CCEEEEEecccC-C-cCCcHHHHHHHHHHHHHHcCCCCCCEEEEe--CCcHHHHH
Confidence 89999 88776532 579999999998 6 69999999999999999988 5778875 45999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+.+|++|++|||...+. .+..+++.+|+ |+.++.. |+++... +++
T Consensus 65 lA~~a~~~g~~~~v~~p~~~~~---~~~~~~~~~Ga~v~~~~~~-~~~~~~~----a~~--------------------- 115 (244)
T cd00640 65 LAAAAARLGLKCTIVMPEGASP---EKVAQMRALGAEVVLVPGD-FDDAIAL----AKE--------------------- 115 (244)
T ss_pred HHHHHHHcCCCEEEEECCCCCH---HHHHHHHHCCCEEEEECCC-HHHHHHH----HHH---------------------
Confidence 9999999999999999987753 45667899998 9999875 5432221 111
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
+.+..+++|+++. +.||...+|+.+++.||.+|+. +..||+||+|+||||+++|++.+|+.
T Consensus 116 ----------------~~~~~~~~~~~~~-~~n~~~~~g~~~~~~Ei~~q~~--~~~~d~ivvp~GtGg~~~G~~~~~~~ 176 (244)
T cd00640 116 ----------------LAEEDPGAYYVNQ-FDNPANIAGQGTIGLEILEQLG--GQKPDAVVVPVGGGGNIAGIARALKE 176 (244)
T ss_pred ----------------HHHhCCCCEecCC-CCCHHHHHHHHHHHHHHHHHcC--CCCCCEEEEecCccHHHHHHHHHHHH
Confidence 1122245666654 4789999999999999999963 11599999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHHHh
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLT 396 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~~e 396 (444)
.++.++|++|++ ..+.|+|++++++++++++++
T Consensus 177 ~~~~~~ii~v~~-----------------------------------------------~~~~v~d~~~~~a~~~l~~~~ 209 (244)
T cd00640 177 LLPNVKVIGVEP-----------------------------------------------EVVTVSDEEALEAIRLLAREE 209 (244)
T ss_pred hCCCCEEEEEee-----------------------------------------------eEEEECHHHHHHHHHHHHHHc
Confidence 999999999988 256788999999999999999
Q ss_pred CCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCC
Q 013383 397 GILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGG 433 (444)
Q Consensus 397 GI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG 433 (444)
||++||+ +|+++++++++.++. .++++||+++|||
T Consensus 210 gi~~~ps-sa~~~aa~~~~~~~~-~~~~~vv~v~tg~ 244 (244)
T cd00640 210 GILVEPS-SAAALAAALKLAKKL-GKGKTVVVILTGG 244 (244)
T ss_pred CceECHh-HHHHHHHHHHHHHhc-CCCCEEEEEeCCC
Confidence 9999998 799999999987543 5688999999997
No 66
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=5.5e-40 Score=339.88 Aligned_cols=325 Identities=14% Similarity=0.064 Sum_probs=214.4
Q ss_pred cccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHH
Q 013383 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHAT 156 (444)
Q Consensus 77 ~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~ 156 (444)
.+++|||++ ++++.+.+|. +++||+|+|++| | +||||+|.+.+++..+++.|.+++||.. ++||||.
T Consensus 65 ~g~pTPL~r---~~~L~~~lg~-------~~~Iy~K~E~~n-P-tGS~K~R~A~~~~~~a~~~G~~~~vtet-ssGN~G~ 131 (419)
T TIGR01415 65 IGRPTPLIR---AKGLEELLGT-------PARIYYKYESVS-P-TGSHKINTAIAQAYYAKIEGAKRLVTET-GAGQWGS 131 (419)
T ss_pred cCCCCCeEE---ccchhhhhCC-------CceEEEEECCCC-C-CCCcHHHHHHHHHHHHHHcCCCeEEEec-CchHHHH
Confidence 457999999 9998877753 469999999998 7 8999999999999999999999999842 4599999
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHH
Q 013383 157 AVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLT 235 (444)
Q Consensus 157 alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~ 235 (444)
|+|++|+.+|++|+||||...+..+..+..+|+.||| |+.++.. +++..+ ...+.-.+..|...|.
T Consensus 132 alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~-~~~~~r---~~~~~~p~~~gsl~~a--------- 198 (419)
T TIGR01415 132 ALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE-FTEFGR---EVLKEDPDHPGSLGIA--------- 198 (419)
T ss_pred HHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc-hhhHHH---HhhhcccccccchHHH---------
Confidence 9999999999999999998554323234567899998 9998864 432111 0000000001111110
Q ss_pred hhhhhcccccccccccccc-ccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHH
Q 013383 236 AQKSRASCLGQMDAHKGID-NCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA 314 (444)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~-~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~ 314 (444)
++.+.++. ..+...|+.+. ..|+. ..|+.++++||++|+...+..||+||+|+|||||++|++.+|
T Consensus 199 -----------i~~a~e~a~~~~~~~y~~~~-~~n~~-~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f 265 (419)
T TIGR01415 199 -----------ISEAIEYALSDEDTKYSLGS-VLNHV-LLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPF 265 (419)
T ss_pred -----------HHHHHHHHHhCCCCEEEeCC-CCcHH-HHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHH
Confidence 01111122 22234565544 33433 346778999999998421135999999999999999999998
Q ss_pred Hh---cC-CCCeEEEEeccCChhHHHHHHH-------HHHHH-HHHHhccccccCC-------cccccccceeeeecccC
Q 013383 315 IC---LG-LPWEVTAIALVDTIDGYKQQEK-------NLISE-FKRLFGFLLKKSS-------LNEVDGEIVHWVERCRP 375 (444)
Q Consensus 315 ~~---~g-~~~~vigV~~~~~~~~~~~~~~-------~l~~~-~~~~i~~~~~~~~-------~~~~~~~~~~l~~~~~~ 375 (444)
.. .| +++||||||+++.+..+..... .+... -..++|.++.|.. ...+......+.++...
T Consensus 266 ~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~ 345 (419)
T TIGR01415 266 VADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIV 345 (419)
T ss_pred HHHHhcCCCCCEEEEEeeCCChhhhcCcccccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHHhhcCce
Confidence 43 24 4799999999887653322100 00000 0011222211110 00000001111233334
Q ss_pred CeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhc-C-CCCCeEEEEEcC-CCccchhhh
Q 013383 376 RKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK-L-KQDADVVMLHTG-GTLGMFGLA 441 (444)
Q Consensus 376 ~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~-~-~~g~~Vv~i~TG-G~~~l~~~~ 441 (444)
..+.|+|+|++++++++++++||++||+ +|+++++++++.++. . .++.+||+++|| |+.++..+.
T Consensus 346 ~~~~V~d~e~~~a~r~la~~eGi~~eps-sa~alaaai~~a~~~~~~~~~~vvv~~lsG~G~~d~~~y~ 413 (419)
T TIGR01415 346 EARAYDQEEAFEAAVIFAKTEGIVPAPE-SAHAIAAAIDEARKCRETGEEKVILFNLSGHGLLDLKAYA 413 (419)
T ss_pred EEEEECHHHHHHHHHHHHHhcCCccccH-HHHHHHHHHHHHHhcCcCCCCeEEEEEcCCCCcCCHHHHH
Confidence 5678999999999999999999999998 799999999876542 2 223368899999 999987654
No 67
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=1.4e-40 Score=335.55 Aligned_cols=291 Identities=15% Similarity=0.042 Sum_probs=212.6
Q ss_pred cccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHH
Q 013383 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHAT 156 (444)
Q Consensus 77 ~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~ 156 (444)
..|+|||++ ++++.+.+| ..+||+|+|++| | +||||||++.+++..+.+.|..+||+. |+||||+
T Consensus 20 ~~g~TPl~~---~~~l~~~~g--------~~~i~~K~E~~n-p-tGSfKdR~a~~~l~~a~~~g~~~vv~a--SsGN~g~ 84 (328)
T TIGR00260 20 GEGVTPLFR---SPALVANVG--------IKNLYVLELFHN-P-TLSFKDRGMAVALTKALELGNDTVLCA--STGNTGA 84 (328)
T ss_pred ccCCccCcc---chHHHHhcC--------CccEEehhhccC-C-chhhHhhhHHHHHHHHHHcCCCEEEEe--CCcHHHH
Confidence 349999999 888876553 138999999998 7 899999999999999999998888884 6799999
Q ss_pred HHHHHHHHhCCeEEEEecCC-CCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHH
Q 013383 157 AVAVSCAERGLKSHLLLRGE-QPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASL 234 (444)
Q Consensus 157 alA~aaa~~Gl~~~i~~~~~-~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~ 234 (444)
|+|++|+.+|++|+||||.. .++ .+..+++.||+ |+.++. .|++..+.. ++++
T Consensus 85 a~A~~a~~~g~~~~v~~p~~~~s~---~k~~~~~~~GA~Vi~~~~-~~~~~~~~~----~~~~----------------- 139 (328)
T TIGR00260 85 AAAAYAGKAGVKVVILYPAGKISL---GKLAQALGYNAEVVAIDG-NFDDAQRLV----KQLF----------------- 139 (328)
T ss_pred HHHHHhccCCCcEEEEECCCCCCH---HHHHHHHhcCcEEEEecC-CHHHHHHHH----HHHH-----------------
Confidence 99999999999999999987 553 45667899998 999986 465433321 1111
Q ss_pred HhhhhhccccccccccccccccCCcEEEecCCCcc--HHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHH
Q 013383 235 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGD--AVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGL 312 (444)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~n--p~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~ 312 (444)
+.. ..| +.+..| |...+|+.+++.||++|+. +..||+||+|+||||+++|++.
T Consensus 140 --------------------~~~-~~~--~~~~~n~~~~~~~g~~t~~~Ei~~q~~--~~~~d~iv~~vG~GG~~~G~~~ 194 (328)
T TIGR00260 140 --------------------GDK-EAL--GLNSVNSIPYRLEGQKTYAFEAVEQLG--WEAPDKVVVPVPNSGNFGAILK 194 (328)
T ss_pred --------------------hhc-Cee--ecccCCCCCeEeeeehhHHHHHHHHhC--CCCCCEEEEECCCcchHHHHHH
Confidence 111 112 223344 7778899999999999962 2369999999999999999999
Q ss_pred HHHhc---C--CCCeEEEEeccCChhHHHHHHH-H-HHH-HHHHHhccccccCCcccccccceeeeecccCCeEEecChH
Q 013383 313 GAICL---G--LPWEVTAIALVDTIDGYKQQEK-N-LIS-EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEG 384 (444)
Q Consensus 313 ~~~~~---g--~~~~vigV~~~~~~~~~~~~~~-~-l~~-~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e 384 (444)
+|+.. | ..++|++|+++++.+.+..... . ... ....++..++ ....+......+.+++++.+..+.|+|+|
T Consensus 195 ~~~~~~~~g~~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l-~~~~p~~~~~~~~~~~~~~~~~~~V~d~e 273 (328)
T TIGR00260 195 GFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAI-DIGNPANWERALELFRRSNGNAEDVSDEE 273 (328)
T ss_pred HHHHHHhcCCccCCceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcce-ecCCCCCHHHHHHHHHhcCCcEEecCHHH
Confidence 99874 2 0239999999987443322211 0 000 0001111110 00011011123344567788899999999
Q ss_pred HHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCC
Q 013383 385 EIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGT 434 (444)
Q Consensus 385 ~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~ 434 (444)
++++++++++++||++||+ +|+++++++++.++ .+.++++||++|||+.
T Consensus 274 ~~~a~~~l~~~~gi~~~ps-sa~alaa~~~~~~~~~~~~~~~vv~i~tG~~ 323 (328)
T TIGR00260 274 ILEAIKLLAREEGYFVEPH-SAVSVAALLKLVEKGTADPAERVVCALTGNG 323 (328)
T ss_pred HHHHHHHHHHhcCeeECch-HHHHHHHHHHHHhCCCCCCCCcEEEEecCCC
Confidence 9999999999999999998 79999999998764 3567889999999975
No 68
>PLN02565 cysteine synthase
Probab=100.00 E-value=7.4e-40 Score=329.31 Aligned_cols=278 Identities=14% Similarity=0.066 Sum_probs=205.3
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC-----CeEEEeCcccch
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQSA 153 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~-----~~Vvt~G~s~GN 153 (444)
|+|||++ ++++...+ +.+||+|+|.+| | +||||+|.+.++|..+.+.|. +.||+. |+||
T Consensus 14 g~TPLv~---l~~l~~~~---------~~~i~~K~E~~n-P-tGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~a--SsGN 77 (322)
T PLN02565 14 GKTPLVY---LNNVVDGC---------VARIAAKLEMME-P-CSSVKDRIGYSMITDAEEKGLIKPGESVLIEP--TSGN 77 (322)
T ss_pred CCCceEE---ccccCCCC---------CceEEEEecccC-C-ccchHHHHHHHHHHHHHHcCCCCCCCcEEEEE--CCCh
Confidence 9999999 87765322 469999999999 7 899999999999999888775 458876 6799
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcc-hhhHHHHHHHHhhhhhcCCCCccchhhhHH
Q 013383 154 HATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTH-YAHRIEMLKSYANLVAGNNGDVVWCNEIFE 231 (444)
Q Consensus 154 hg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~-~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~ 231 (444)
||+|+|++|+.+|++|+||||+..+.. +..+++.||+ |+.++... ++++.+. |+++
T Consensus 78 ~g~alA~~a~~~G~~~~ivvp~~~~~~---k~~~i~~~GA~V~~~~~~~~~~~~~~~----a~~l--------------- 135 (322)
T PLN02565 78 TGIGLAFMAAAKGYKLIITMPASMSLE---RRIILLAFGAELVLTDPAKGMKGAVQK----AEEI--------------- 135 (322)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCcHH---HHHHHHHcCCEEEEeCCCCCcHHHHHH----HHHH---------------
Confidence 999999999999999999999987754 4557899998 98888631 2221111 2211
Q ss_pred HHHHhhhhhccccccccccccccccCCcEEEecCCCccHHH-HHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHH
Q 013383 232 ASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 310 (444)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~-~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl 310 (444)
.+..+..|++ .+..||.. ..|+.++++||++|+ ++ .||+||+|+||||+++|+
T Consensus 136 ----------------------~~~~~~~~~~-~q~~n~~n~~~~~~t~a~Ei~~q~--~~-~~d~vv~~vG~GG~l~Gi 189 (322)
T PLN02565 136 ----------------------LAKTPNSYIL-QQFENPANPKIHYETTGPEIWKGT--GG-KVDAFVSGIGTGGTITGA 189 (322)
T ss_pred ----------------------HHhCCCcEee-cccCCHhHHHHHHHHHHHHHHHhc--CC-CCCEEEEcCCchHHHHHH
Confidence 1122233433 34455643 357999999999995 32 699999999999999999
Q ss_pred HHHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHH
Q 013383 311 GLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (444)
Q Consensus 311 ~~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~ 390 (444)
+.++++.++.+||+|||+++++... .... .....+.++.+.. + ..+. .+..++.+.|+|++++++++
T Consensus 190 ~~~lk~~~p~~kvi~Vep~~s~~~~-~g~~--~~~~~~glg~~~~------~--~~~~--~~~vd~~v~V~d~ea~~a~~ 256 (322)
T PLN02565 190 GKYLKEQNPDIKLYGVEPVESAVLS-GGKP--GPHKIQGIGAGFI------P--GVLD--VDLLDEVVQVSSDEAIETAK 256 (322)
T ss_pred HHHHHHhCCCCEEEEEecCCCcccc-CCCC--CCccCCCCCCCCC------C--CcCC--HhHCCEEEEECHHHHHHHHH
Confidence 9999999999999999999875321 1100 0000111221110 0 1111 14456789999999999999
Q ss_pred HHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCC
Q 013383 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (444)
Q Consensus 391 ~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~ 434 (444)
+|++++|+++||+ +|+++++++++.+....++++||+|+|++-
T Consensus 257 ~l~~~~gi~vg~s-sga~laaa~~~a~~~~~~~~~vV~v~~d~G 299 (322)
T PLN02565 257 LLALKEGLLVGIS-SGAAAAAAIKIAKRPENAGKLIVVIFPSFG 299 (322)
T ss_pred HHHHHhCcEEecc-HHHHHHHHHHHHHhcCCCCCeEEEEECCCc
Confidence 9999999999997 789999999987654345789999999854
No 69
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-40 Score=320.76 Aligned_cols=276 Identities=16% Similarity=0.079 Sum_probs=213.9
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC----CeEEEeCcccchH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~----~~Vvt~G~s~GNh 154 (444)
|+|||++ |+++.+.. +++||+|.|.+| | +||.|||.+.+++.+|++.|. ++||- +++||+
T Consensus 10 G~TPlvr---L~~~~~~~---------~~~i~~KlE~~N-P-~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE--~TSGNT 73 (300)
T COG0031 10 GNTPLVR---LNRLSPGT---------GVEIYAKLESFN-P-GGSVKDRIALYMIEDAEKRGLLKPGGTIVE--ATSGNT 73 (300)
T ss_pred CCCCcEe---ecccCCCC---------CceEEEEhhhcC-C-CCchhHHHHHHHHHHHHHcCCCCCCCEEEE--cCCChH
Confidence 9999999 99987542 479999999998 7 789999999999999999884 67775 377999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCc-chhhHHHHHHHHhhhhhcCCCCccchhhhHHH
Q 013383 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (444)
Q Consensus 155 g~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~ 232 (444)
|+++|++|+.+|+++++|||+.+++++ ..++++||| |+.++.. .+.. .+.
T Consensus 74 GI~LA~vaa~~Gy~~iivmP~~~S~er---~~~l~a~GAevi~t~~~~g~~~--~a~----------------------- 125 (300)
T COG0031 74 GIALAMVAAAKGYRLIIVMPETMSQER---RKLLRALGAEVILTPGAPGNMK--GAI----------------------- 125 (300)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHH---HHHHHHcCCEEEEcCCCCCchH--HHH-----------------------
Confidence 999999999999999999999887653 346799998 9999972 2111 111
Q ss_pred HHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHH-HHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHH
Q 013383 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (444)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~-G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~ 311 (444)
+++.++.+..++.++++.|..||.+.+ ++.+++.||++|.. ..+|+||+++|||||++|++
T Consensus 126 ---------------~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~---g~~d~fVagvGTGGTitGva 187 (300)
T COG0031 126 ---------------ERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTD---GKVDAFVAGVGTGGTITGVA 187 (300)
T ss_pred ---------------HHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHHhC---CCCCEEEEeCCcchhHHHHH
Confidence 112223334455577777888887755 55688999999963 25999999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHH
Q 013383 312 LGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHR 391 (444)
Q Consensus 312 ~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~ 391 (444)
..+|+..|+++|++|+|++++-... . . -....+.++.+++| ..+..+..|+.+.|+|+++++++|+
T Consensus 188 r~Lk~~~p~i~iv~vdP~~S~~~~~-G-~--g~~~i~GIG~~~ip----------~~~~~~~iD~v~~V~d~~A~~~~r~ 253 (300)
T COG0031 188 RYLKERNPNVRIVAVDPEGSVLLSG-G-E--GPHKIEGIGAGFVP----------ENLDLDLIDEVIRVSDEEAIATARR 253 (300)
T ss_pred HHHHhhCCCcEEEEECCCCCcccCC-C-C--CCcccCCCCCCcCC----------cccccccCceEEEECHHHHHHHHHH
Confidence 9999999999999999998763210 1 0 00011223443332 1234456788999999999999999
Q ss_pred HHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 013383 392 IAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG 432 (444)
Q Consensus 392 la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TG 432 (444)
|+++|||+++++ ||+++++++++.++ ++++++||+|++-
T Consensus 254 La~~eGilvG~S-sGA~~~aa~~~a~~-~~~g~~IVti~pD 292 (300)
T COG0031 254 LAREEGLLVGIS-SGAALAAALKLAKE-LPAGKTIVTILPD 292 (300)
T ss_pred HHHHhCeeeccc-HHHHHHHHHHHHHh-cCCCCeEEEEECC
Confidence 999999999997 79999999988764 4568899888764
No 70
>PLN03013 cysteine synthase
Probab=100.00 E-value=1.1e-39 Score=335.85 Aligned_cols=278 Identities=14% Similarity=0.042 Sum_probs=208.5
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC-----CeEEEeCcccch
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQSA 153 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~-----~~Vvt~G~s~GN 153 (444)
|+|||++ ++++.+.. +++||+|+|.+| | +||+|||.+.++|.++++.|. ++||+. |+||
T Consensus 122 G~TPLv~---l~~l~~~~---------g~~Iy~KlE~lN-P-tGSfKdR~A~~~l~~a~~~G~l~pG~~~VVea--SSGN 185 (429)
T PLN03013 122 GKTPMVY---LNSIAKGC---------VANIAAKLEIME-P-CCSVKDRIGYSMVTDAEQKGFISPGKSVLVEP--TSGN 185 (429)
T ss_pred CCCCeEE---Cccccccc---------CCeEEEEeccCC-C-ccccHHHHHHHHHHHHHHcCCcCCCCcEEEEE--CCcH
Confidence 9999999 88776532 469999999998 7 899999999999999988885 558875 6799
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcc-hhhHHHHHHHHhhhhhcCCCCccchhhhHH
Q 013383 154 HATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTH-YAHRIEMLKSYANLVAGNNGDVVWCNEIFE 231 (444)
Q Consensus 154 hg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~-~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~ 231 (444)
||+|+|++|+.+|++|+||||+..++. +..+++.||| |+.++... +.. ..+ .|++
T Consensus 186 ~G~ALA~~a~~~G~~~~VvvP~~~s~~---K~~~ira~GAeVi~v~~~~~~~~---a~~-~A~e---------------- 242 (429)
T PLN03013 186 TGIGLAFIAASRGYRLILTMPASMSME---RRVLLKAFGAELVLTDPAKGMTG---AVQ-KAEE---------------- 242 (429)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCcHH---HHHHHHHcCCEEEEECCCCChHH---HHH-HHHH----------------
Confidence 999999999999999999999988764 4457899998 99998642 111 111 1111
Q ss_pred HHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHH-HHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHH
Q 013383 232 ASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 310 (444)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~-G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl 310 (444)
+.+..+.. +++.+..||.... ||.+++.||++|. + ..||+||+|+||||+++|+
T Consensus 243 ---------------------la~~~~g~-~~~~qy~Np~n~~ah~~ttg~EI~eq~--~-~~~D~vV~~vGtGGtisGi 297 (429)
T PLN03013 243 ---------------------ILKNTPDA-YMLQQFDNPANPKIHYETTGPEIWDDT--K-GKVDIFVAGIGTGGTITGV 297 (429)
T ss_pred ---------------------HHhhcCCe-EeCCCCCCHHHHHHHHHHHHHHHHHhc--C-CCCCEEEEeCCccHHHHHH
Confidence 11222233 4556778888864 9999999999995 3 2699999999999999999
Q ss_pred HHHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHH
Q 013383 311 GLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (444)
Q Consensus 311 ~~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~ 390 (444)
++++++.+|+++|+|||++++... ..... .....+.++.+.+ ...+...+.++.+.|+|+|++++++
T Consensus 298 ar~lKe~~P~vkVigVep~gs~~l-~~g~~--~~~~i~Glg~~~i----------p~~~~~~~vD~vv~VsD~ea~~a~r 364 (429)
T PLN03013 298 GRFIKEKNPKTQVIGVEPTESDIL-SGGKP--GPHKIQGIGAGFI----------PKNLDQKIMDEVIAISSEEAIETAK 364 (429)
T ss_pred HHHHHhhCCCCEEEEEEeCCCchh-hCCCC--CCcccCcccCCcC----------CHhHHHHhccEEEEECHHHHHHHHH
Confidence 999999999999999999987532 11100 0000111222111 1223445677899999999999999
Q ss_pred HHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEE--cCCC
Q 013383 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLH--TGGT 434 (444)
Q Consensus 391 ~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~--TGG~ 434 (444)
+|++++||++||+ +|+++++++++.+....++++||+++ +||.
T Consensus 365 ~La~~eGi~vG~S-SGAalaAalkla~~~~~~g~~IVv~i~~d~g~ 409 (429)
T PLN03013 365 QLALKEGLMVGIS-SGAAAAAAIKVAKRPENAGKLIAVSLFASGRD 409 (429)
T ss_pred HHHHHcCCEEecC-HHHHHHHHHHHhhhccCCCCEEEEEEcCCCch
Confidence 9999999999997 78999999988654333577776665 5554
No 71
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=6e-40 Score=326.18 Aligned_cols=288 Identities=22% Similarity=0.216 Sum_probs=205.2
Q ss_pred cCCCCCcccccc-ccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLN-NTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~-~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~a 157 (444)
++|||++ ++ ++....+ +.+||+||||+| | +||||+|++.+++.+++++|.++|+. +|+||||.|
T Consensus 6 ~~TPl~~---~~~~~~~~~~--------~~~i~~K~E~~~-p-tgs~K~R~a~~~l~~a~~~~~~~vv~--assGN~g~a 70 (306)
T PF00291_consen 6 GPTPLVR---LPSRLLSELG--------GANIYLKREDLN-P-TGSFKDRGAYYLLSRAKEKGGRTVVG--ASSGNHGRA 70 (306)
T ss_dssp SSS-EEE---EHEHHHHHCT--------TSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTTSEEEE--ESSSHHHHH
T ss_pred cCCCEEE---Cccccchhcc--------CCeEEEEECCCC-C-cCCcccccchhhhhhccccccceeee--eccCCceeh
Confidence 9999999 75 3332222 689999999998 8 89999999999999999999899975 478999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+.+|++|++|||...++ .+..+++.||+ |+.++.. +....+....+++ +.+
T Consensus 71 ~A~~a~~~g~~~~i~~p~~~~~---~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~~~~~-----------------~~~-- 127 (306)
T PF00291_consen 71 LAYAAARLGLKCTIVVPEDVSP---EKLKQMRALGAEVILVPGD-VEGAFDDAQELAK-----------------ERA-- 127 (306)
T ss_dssp HHHHHHHHTCEEEEEEETTSHH---HHHHHHHHTTCEEEEESST-HHHHHHHHHHHHH-----------------HHH--
T ss_pred hhhhhhhccccceeeecccccc---ccccceeeecceEEEcccc-ccccccccccccc-----------------ccc--
Confidence 9999999999999999987654 45668899998 8888763 2221111111111 000
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
..+ ...+.. ++.. .+|....|+.+++.||.+|+. .+++|.||+|+||||+++|++.+++.
T Consensus 128 --------------~~~-~~~~~~--~~~~-~~~~~~~g~~~~~~Ei~~q~~--~~d~d~vvv~~GtGg~~~Gi~~~~~~ 187 (306)
T PF00291_consen 128 --------------ELL-SPFNGE--LNQY-NNPNVIAGYATIGLEIYEQLG--KPDPDYVVVPVGTGGTAAGIAAGLKE 187 (306)
T ss_dssp --------------HHH-HHSTTE--ESTT-TSHHHHHHHHHHHHHHHHHHT--TESESEEEEEESSSHHHHHHHHHHHH
T ss_pred --------------ccc-cccccc--cCcc-cchhhhhhhhhcchhcccccc--cccceEEEecCCchhHHHHHHhhhhh
Confidence 000 011111 3333 679999999999999999973 23445699999999999999999999
Q ss_pred --cCCCCeEEEEeccCChhHHHHHHHHHH------HHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHH
Q 013383 317 --LGLPWEVTAIALVDTIDGYKQQEKNLI------SEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 388 (444)
Q Consensus 317 --~g~~~~vigV~~~~~~~~~~~~~~~l~------~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a 388 (444)
. ++++|+||++.++............ ..++ .++.+ .+......+++++++.+..|.|+|++++++
T Consensus 188 ~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~-gl~~~-----~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a 260 (306)
T PF00291_consen 188 LIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIA-GLGVP-----MPFPGELDLELIDEYVGDVVGVSDEEALEA 260 (306)
T ss_dssp HCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSST-GGTSS-----SCTTTTHHHHHHHHETEEEEEEEHHHHHHH
T ss_pred hhc-ccccceeeeccCCccccccccccccccccceeeee-cccCC-----ccchhhhhhhhhhhccccccccchHHHHHH
Confidence 7 8999999999876543322111100 0011 12111 101223345667787787889999999999
Q ss_pred HHHHHHHhCCcccccccHHHHHHHHHHhhhc-C--CCCCeEEEEEcC
Q 013383 389 CHRIAQLTGILVDPVYTLAAWEMATLLSDEK-L--KQDADVVMLHTG 432 (444)
Q Consensus 389 ~~~la~~eGI~vEP~ysaaa~aal~~l~~~~-~--~~g~~Vv~i~TG 432 (444)
++++++++||++||+| ++++++++++.++. + +++++||+||||
T Consensus 261 ~~~l~~~~gi~~~p~~-a~a~aa~~~~~~~~~~~~~~~~~vv~v~tG 306 (306)
T PF00291_consen 261 IRELAEREGILVEPSS-AAALAAALKLAERGSLAPPAGKRVVVVLTG 306 (306)
T ss_dssp HHHHHHHHSB-B-HHH-HHHHHHHHHHHHHTGCHTTTTSEEEEEE-B
T ss_pred HHHHHHHcCcEEcHHH-HHHHHHHHHHHHhCCccccCCCeEEEEcCC
Confidence 9999999999999985 77888888776543 3 478999999998
No 72
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=1.2e-39 Score=335.15 Aligned_cols=295 Identities=14% Similarity=0.089 Sum_probs=212.2
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHH-----HHhcCC------------
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPL-----LEDHIV------------ 141 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~-----a~~~g~------------ 141 (444)
++|||++ ++++++.+|.-- .+..+.+||+|+|.+| |.+||||+|.+.++|.. +++.|.
T Consensus 51 ~~TPLv~---~~~ls~~~g~~~-~~~~~~~v~~K~E~~n-P~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~ 125 (404)
T cd06447 51 IESPLLP---IPRMKQALEKLY-HQPIKGRLLLKADSHL-PISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLAS 125 (404)
T ss_pred cCCCcee---hHHHHHHhcccc-ccCcCceEEEEecCCC-CCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhh
Confidence 9999999 888876653000 0000368999999999 54699999999888753 555554
Q ss_pred ---------CeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHH
Q 013383 142 ---------TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKS 211 (444)
Q Consensus 142 ---------~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~ 211 (444)
++||++ |+||||+|+|++|+.+|++|+||||...|.. +...++.||+ |+.++. .|+++.+.
T Consensus 126 ~~~~~~~~~~~VV~a--SsGN~G~alA~~a~~~G~~~~IvvP~~~~~~---K~~~ira~GAeVv~v~~-~~~~a~~~--- 196 (404)
T cd06447 126 EKFRKLFSQYSIAVG--STGNLGLSIGIMAAALGFKVTVHMSADAKQW---KKDKLRSKGVTVVEYET-DYSKAVEE--- 196 (404)
T ss_pred hhhhhcccCCEEEEE--CccHHHHHHHHHHHHcCCCEEEEECCCCcHH---HHHHHHHCCCEEEEECC-CHHHHHHH---
Confidence 478875 6799999999999999999999999988764 4457899998 999985 35543222
Q ss_pred HhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHH-cC
Q 013383 212 YANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHL-LG 290 (444)
Q Consensus 212 ~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~-~g 290 (444)
|+++ .+..+..|+++. ..+|....|+.|+++||++|+. .+
T Consensus 197 -a~~l-------------------------------------a~~~~~~~~v~~-~n~~~~iaG~~T~g~EI~eQl~~~~ 237 (404)
T cd06447 197 -GRKQ-------------------------------------AAADPMCYFVDD-ENSRDLFLGYAVAASRLKAQLAELG 237 (404)
T ss_pred -HHHH-------------------------------------HHHCCCeEeCCC-CCchhHHhhHHHHHHHHHHHhhhcc
Confidence 1111 112223454443 4456778899999999999973 11
Q ss_pred C----CCcCEEEEeCCChhhHHHHHHHHHhc-CCCCeEEEEeccCChhHHHHHHHH-H-----------HHHHHHHhccc
Q 013383 291 R----KRAIKFVVDAGTGTTAVGLGLGAICL-GLPWEVTAIALVDTIDGYKQQEKN-L-----------ISEFKRLFGFL 353 (444)
Q Consensus 291 ~----~~~d~vvv~vGtGgt~aGl~~~~~~~-g~~~~vigV~~~~~~~~~~~~~~~-l-----------~~~~~~~i~~~ 353 (444)
. ..||+||+|+|+||+++|++++|+++ ++.++|++||+++++..+.+...+ . ...+++.++.
T Consensus 238 ~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~- 316 (404)
T cd06447 238 IKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAV- 316 (404)
T ss_pred CccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHHHHHHHcCCCccccccccCCCccchhhhhcC-
Confidence 1 13678999999999999999999987 788999999998876543321110 0 0122232222
Q ss_pred cccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhc-------C---CCC
Q 013383 354 LKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK-------L---KQD 423 (444)
Q Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~-------~---~~g 423 (444)
..+....+.+++++.++.+.|+|+|+++++++|++++||++||+ +|+++++++++.++. + -.+
T Consensus 317 ------~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepS-gAa~lAAl~~~~~~~~~~~~~~~~~~~~~ 389 (404)
T cd06447 317 ------GRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEPS-AAAGFTGPAQVLSEAEGKRYVRLGYRMEN 389 (404)
T ss_pred ------CCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHH-HHHHHHHHHHHHHhhhHHHhcCccccccC
Confidence 11222334456677889999999999999999999999999997 689999999987541 1 134
Q ss_pred CeEEEEEcCCC
Q 013383 424 ADVVMLHTGGT 434 (444)
Q Consensus 424 ~~Vv~i~TGG~ 434 (444)
.+-++|.|||.
T Consensus 390 ~~~~~~~~~~~ 400 (404)
T cd06447 390 ATHIVWATGGS 400 (404)
T ss_pred ceEEEEccCCC
Confidence 56678899986
No 73
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=1.5e-39 Score=332.86 Aligned_cols=299 Identities=14% Similarity=0.061 Sum_probs=217.5
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHh--------------------
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLED-------------------- 138 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~-------------------- 138 (444)
.+|||++ ++++.+.+|. .+||+|+|++|+| +||||+|+..+.+..+..
T Consensus 21 ~~TPL~~---~~~l~~~~g~--------~~v~~K~E~~~~~-tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (376)
T TIGR01747 21 RPTPLCA---LDHLANLLGL--------KKILVKDESKRFG-LNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAI 88 (376)
T ss_pred CCCCCcc---hHHHHHHhCC--------CcEEEeeCCCCCC-CCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHH
Confidence 6999999 8888877642 5899999999865 899999999888877533
Q ss_pred ---cCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhh
Q 013383 139 ---HIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYAN 214 (444)
Q Consensus 139 ---~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~ 214 (444)
.|.++||+. |+||||+|+|++|+.+|++|+||||...++. +...++.||+ |+.|+. .|++..+. ++
T Consensus 89 ~~~~~~~~vv~a--SsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~---k~~~i~~~GAeVi~v~~-~~~~a~~~----a~ 158 (376)
T TIGR01747 89 GEKMGQATFATA--TDGNHGRGVAWAAQQLGQKAVVYMPKGSAQE---RVENILNLGAECTITDM-NYDDTVRL----AM 158 (376)
T ss_pred HhhcCCCEEEEE--CccHHHHHHHHHHHHcCCCEEEEECCCCCHH---HHHHHHhCCCEEEEECC-CHHHHHHH----HH
Confidence 245778875 6799999999999999999999999987753 4456799998 999986 46643322 12
Q ss_pred hhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecC----CC--ccHHHHHHHHHHHHHHHHhHH
Q 013383 215 LVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNE----GA--GDAVALLGVFRLLQYLSQDHL 288 (444)
Q Consensus 215 ~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~----g~--~np~~~~G~~t~~~Ei~~q~~ 288 (444)
+++. .. ..|+++. +. .+|....||.+++.||++|+.
T Consensus 159 ~~~~-------------------------------------~~-g~~~~~~~~~~~~~~~~~~ii~G~~Tia~Ei~eQl~ 200 (376)
T TIGR01747 159 QMAQ-------------------------------------QH-GWVVVQDTAWEGYEKIPTWIMQGYATLADEAVEQLR 200 (376)
T ss_pred HHHH-------------------------------------hc-CcEEeccccccccccCCchHHHHHHHHHHHHHHHhh
Confidence 2111 11 1333431 22 336778999999999999973
Q ss_pred -cCCCCcCEEEEeCCChhhHHHHHHHHHhcC-C-CCeEEEEeccCChhHHHHHHH--HHHHHH---HHHhccccccCCcc
Q 013383 289 -LGRKRAIKFVVDAGTGTTAVGLGLGAICLG-L-PWEVTAIALVDTIDGYKQQEK--NLISEF---KRLFGFLLKKSSLN 360 (444)
Q Consensus 289 -~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g-~-~~~vigV~~~~~~~~~~~~~~--~l~~~~---~~~i~~~~~~~~~~ 360 (444)
.++..||+||+|+|+||+++|++.+++... + .++|++||+++++..+.+... +-...+ ..++.++ +...
T Consensus 201 ~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~~~~s~~~~~g~~~~~~~~~~Tiadg---l~~~ 277 (376)
T TIGR01747 201 EMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADCLYQSAVKKDGDIVNVGGDMATIMAG---LACG 277 (376)
T ss_pred ccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCHHHHHHHhcCCCeEEcCCCccccccc---cccC
Confidence 223479999999999999999999997653 3 369999999998765544221 100000 0122221 1222
Q ss_pred cccccceeeeecccCCeEEecChHHHHHHHHHHHHh----CCcccccccHHHHHHHHHHhh---------h-cCCCCCeE
Q 013383 361 EVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLT----GILVDPVYTLAAWEMATLLSD---------E-KLKQDADV 426 (444)
Q Consensus 361 ~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~~e----GI~vEP~ysaaa~aal~~l~~---------~-~~~~g~~V 426 (444)
.+....+++++++.+..+.|+|+++.+++++|++.. +|++||+ +++++|++...+. + .+.++++|
T Consensus 278 ~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epa-ga~~la~l~~~~~~~~~~~~~~~~~~~~~~~v 356 (376)
T TIGR01747 278 EPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGES-GAVGLGLLAAVMYHPQYQSLMEKLQLDKDAVV 356 (376)
T ss_pred CcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCc-hHHHHHHHHHHHhCchHHHHHHHcCCCCCCEE
Confidence 233355677888889899999999999999999855 5999997 6788888874332 1 25557999
Q ss_pred EEEEcCCCccchhhh
Q 013383 427 VMLHTGGTLGMFGLA 441 (444)
Q Consensus 427 v~i~TGG~~~l~~~~ 441 (444)
|+|+||||.+.--|.
T Consensus 357 vvi~t~gn~d~~~~~ 371 (376)
T TIGR01747 357 LVISTEGDTDPDHYR 371 (376)
T ss_pred EEEeCCCCCCHHHHH
Confidence 999999999876554
No 74
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=2.3e-39 Score=335.71 Aligned_cols=325 Identities=14% Similarity=0.048 Sum_probs=216.8
Q ss_pred ccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHH
Q 013383 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATA 157 (444)
Q Consensus 78 ~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~a 157 (444)
.++|||++ ++++.+.+|. +.+||+|+|++| | +||||+|.+...+..+++.|.++++|.. ++||||.|
T Consensus 75 ~~~TPL~~---~~~L~~~lg~-------~~~Iy~K~E~~n-P-tGS~K~R~A~~~a~~a~~~G~~~~vtet-gsGN~G~a 141 (427)
T PRK12391 75 WRPTPLIR---ARRLEKALGT-------PAKIYYKYEGVS-P-TGSHKPNTAVAQAYYNKKEGIKRLTTET-GAGQWGSA 141 (427)
T ss_pred cCCCCeeE---chhhHhhhCC-------CceEEEEEcCCC-C-CCChHHHHHHHHHHHHHHCCCCEEEEcc-CchHHHHH
Confidence 48999999 9998877653 469999999998 7 7999999999888889999999999742 45999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+.+|++|+||||...+..+..+..+|+.||| |+.++.. +++.... .+++..+...+...-
T Consensus 142 lA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~-~~~~~~~------~~~~~~~~~gsl~~a------- 207 (427)
T PRK12391 142 LALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSD-LTEAGRK------ILAEDPDHPGSLGIA------- 207 (427)
T ss_pred HHHHHHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCc-hhhhhhh------hhhcCccccccHHHH-------
Confidence 999999999999999997443322234567899998 9988853 3321110 011111111111000
Q ss_pred hhhhcccccccccccccccc-CCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHH
Q 013383 237 QKSRASCLGQMDAHKGIDNC-RKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAI 315 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~-~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~ 315 (444)
++.+.++... ....|+++... | ....|+.++++||++|+...+..||+||+|+|+||+++|++.+|.
T Consensus 208 ----------i~~A~e~a~~~~~~~y~~~s~~-~-~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~ 275 (427)
T PRK12391 208 ----------ISEAVEDAAKRPDTKYALGSVL-N-HVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFL 275 (427)
T ss_pred ----------HHHHHHHHHhCCCcEEEcCCCC-c-HHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHH
Confidence 0111122222 23456655432 2 244577889999999984222369999999999999999999883
Q ss_pred ---hcC-CCCeEEEEeccCChhHHHHHHH-------HHHH-HHHHHhccccccCCcc-------cccccceeeeecccCC
Q 013383 316 ---CLG-LPWEVTAIALVDTIDGYKQQEK-------NLIS-EFKRLFGFLLKKSSLN-------EVDGEIVHWVERCRPR 376 (444)
Q Consensus 316 ---~~g-~~~~vigV~~~~~~~~~~~~~~-------~l~~-~~~~~i~~~~~~~~~~-------~~~~~~~~l~~~~~~~ 376 (444)
..| +.+||+|||+++++..++.... .+.. .-..++|.++.+.... ...+....+.+....+
T Consensus 276 ~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~ 355 (427)
T PRK12391 276 GDKLEGKKDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIE 355 (427)
T ss_pred HHHhcCCCCceEEEEeeccchhhccccccccccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcCceE
Confidence 346 8899999999887653321100 0000 0001122221111000 0000011122233345
Q ss_pred eEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhc--CCCCCeEEEEEcC-CCccchhhhh
Q 013383 377 KFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK--LKQDADVVMLHTG-GTLGMFGLAQ 442 (444)
Q Consensus 377 ~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~--~~~g~~Vv~i~TG-G~~~l~~~~~ 442 (444)
.+.|+++|+++++++++++|||++||+ +++++++++++.++. ..++++||+++|| |+.++..+.+
T Consensus 356 ~~~V~d~e~~~a~~~~a~~eGi~~~ps-s~~alaaa~~~a~~~~~~~~~~~iv~~lsG~G~~d~~~y~~ 423 (427)
T PRK12391 356 ARAYPQTEVFEAAVLFARTEGIVPAPE-SSHAIAAAIDEALKAKEEGEEKVILFNLSGHGLLDLAAYDA 423 (427)
T ss_pred EEEECHHHHHHHHHHHHHHcCCeechH-HHHHHHHHHHHHHhccccCCCCEEEEEeCCCCCCCHHHHHH
Confidence 689999999999999999999999998 789999999876542 2347899999999 9999887654
No 75
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=3.6e-39 Score=334.08 Aligned_cols=296 Identities=14% Similarity=0.065 Sum_probs=213.2
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHH-----HHhcCC------------
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPL-----LEDHIV------------ 141 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~-----a~~~g~------------ 141 (444)
++|||++ ++++++.+|...... .+.+||+|+|++| |.+||||+|++.+++.. |++.|.
T Consensus 69 ~~TPL~~---~~~ls~~~~~~~~~~-~~~~v~lKlE~~n-P~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e 143 (431)
T TIGR02035 69 IESPLVE---IFNMQKELEKKYQQE-IPGRLLLKMDSHL-PISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAE 143 (431)
T ss_pred cCCCccc---hHHHHHHhhhcccCC-cCceEEEEecccC-CccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcc
Confidence 8999999 888877553100000 1468999999999 65799999999998754 556665
Q ss_pred ---------CeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHH
Q 013383 142 ---------TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKS 211 (444)
Q Consensus 142 ---------~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~ 211 (444)
.+||+. |+||||+++|++|+.+|++|+||||..+|.. +..+++.||| |+.++. .|++..+.
T Consensus 144 ~~~~~~~~~~~Vv~a--SsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~---K~~~ir~~GAeVv~~~~-~~~~a~~~--- 214 (431)
T TIGR02035 144 KKFKDFFSRYSIAVG--STGNLGLSIGIISAALGFQVTVHMSADAKQW---KKDKLRSKGVTVVEYES-DYGVAVEE--- 214 (431)
T ss_pred hhhhhcccCceEEEE--CccHHHHHHHHHHHHcCCCEEEEECCCCCHH---HHHHHHHcCCEEEEECC-CHHHHHHH---
Confidence 367764 6799999999999999999999999988764 4457899998 999986 46643221
Q ss_pred HhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCcc-HHHHHHHHHHHHHHHHhHHc-
Q 013383 212 YANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGD-AVALLGVFRLLQYLSQDHLL- 289 (444)
Q Consensus 212 ~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~n-p~~~~G~~t~~~Ei~~q~~~- 289 (444)
|++++ +..+..|++.. .| +....||.+++.||++|+..
T Consensus 215 -A~~la-------------------------------------~~~~~~~~~d~--~n~~n~~aG~~T~g~EI~eQl~~~ 254 (431)
T TIGR02035 215 -GRKNA-------------------------------------DADPMCYFVDD--ENSRNLFLGYAVAASRLKKQFDKK 254 (431)
T ss_pred -HHHHH-------------------------------------HhcCCeEECCC--CCcccHHhhHHHHHHHHHHhhhcc
Confidence 22221 11223344332 33 33458999999999999731
Q ss_pred ----CCCCcCEEEEeCCChhhHHHHHHHHHhc-CCCCeEEEEeccCChhHHHHHHHHH-----H-------HHHHHHhcc
Q 013383 290 ----GRKRAIKFVVDAGTGTTAVGLGLGAICL-GLPWEVTAIALVDTIDGYKQQEKNL-----I-------SEFKRLFGF 352 (444)
Q Consensus 290 ----g~~~~d~vvv~vGtGgt~aGl~~~~~~~-g~~~~vigV~~~~~~~~~~~~~~~l-----~-------~~~~~~i~~ 352 (444)
+...||.||+|+|+||+++|++.+++++ +++++||+||+++++..+.+...+. . .++++.+
T Consensus 255 ~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGl-- 332 (431)
T TIGR02035 255 GIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGL-- 332 (431)
T ss_pred ccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCccccccccCCCCCceeccc--
Confidence 1125789999999999999999999997 8899999999999765433321110 0 0112222
Q ss_pred ccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhc------------C
Q 013383 353 LLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK------------L 420 (444)
Q Consensus 353 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~------------~ 420 (444)
.+..+....+.+++++.++.+.|+|+++++++++|++++||++||+ +|++++++.+++++. +
T Consensus 333 -----av~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpS-saa~laa~~~l~~~~~~~~~~~~~~~~~ 406 (431)
T TIGR02035 333 -----AVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEPS-ALAGMEGPVRLLKYEDSYRYIEGRIGKN 406 (431)
T ss_pred -----cCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHH-HHHHHHHHHHHHhhhhhHHHHcCccccc
Confidence 2222233344455667888999999999999999999999999997 688899988776542 1
Q ss_pred CCCCeEEEEEcCCCcc
Q 013383 421 KQDADVVMLHTGGTLG 436 (444)
Q Consensus 421 ~~g~~Vv~i~TGG~~~ 436 (444)
.++.+.++|.|||..-
T Consensus 407 ~~~~~~~~~~tg~~~~ 422 (431)
T TIGR02035 407 LNNATHVVWATGGGMV 422 (431)
T ss_pred cCCCeEEEEecCCCCC
Confidence 1467899999999753
No 76
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=6.9e-39 Score=330.10 Aligned_cols=299 Identities=14% Similarity=0.051 Sum_probs=209.9
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHH--HhcC----------------
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLL--EDHI---------------- 140 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a--~~~g---------------- 140 (444)
.+|||++ +++|++.+|. .+||+|+|++++| +||||+|++.+.+..+ .+.|
T Consensus 40 ~~TPL~~---~~~L~~~~g~--------~~v~lK~E~~q~~-tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~ 107 (396)
T TIGR03528 40 QPTPLAE---LDNLAKHLGV--------GSILVKDESYRFG-LNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEI 107 (396)
T ss_pred cCCCCcc---hHHHHHHhCC--------CcEEEeeCCCCCC-cCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHH
Confidence 6999999 8887776642 5899999999866 8999999988887664 2222
Q ss_pred -----CCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhh
Q 013383 141 -----VTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYAN 214 (444)
Q Consensus 141 -----~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~ 214 (444)
..+||+. |+||||+|+|++|+.+|++|+||||...|.. +...++.||| |+.++. .|++..+. |+
T Consensus 108 ~~~~~~~~vv~a--SsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~---K~~~ir~~GAeVi~~~~-~~~~a~~~----a~ 177 (396)
T TIGR03528 108 REKLGDITFVTA--TDGNHGRGVAWAANQLGQKSVVYMPKGSAQI---RLENIRAEGAECTITDL-NYDDAVRL----AW 177 (396)
T ss_pred HhhccCcEEEEE--CccHHHHHHHHHHHHcCCCEEEEEeCCCcHH---HHHHHHhcCCEEEEECC-CHHHHHHH----HH
Confidence 2367775 6799999999999999999999999987753 4456799998 999986 35543222 22
Q ss_pred hhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecC----CCcc--HHHHHHHHHHHHHHHHhHH
Q 013383 215 LVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNE----GAGD--AVALLGVFRLLQYLSQDHL 288 (444)
Q Consensus 215 ~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~----g~~n--p~~~~G~~t~~~Ei~~q~~ 288 (444)
+++. .. ..++++. ++.| |....||.++++||++|+.
T Consensus 178 ~~a~-------------------------------------~~-g~~~v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~ 219 (396)
T TIGR03528 178 KMAQ-------------------------------------EN-GWVMVQDTAWEGYEKIPTWIMQGYGTLALEALEQLK 219 (396)
T ss_pred HHHH-------------------------------------hc-CcEeeccccccccccCchHHHHHHhHHHHHHHHHHh
Confidence 2211 11 2233321 2223 6677899999999999973
Q ss_pred -cCCCCcCEEEEeCCChhhHHHHHHHHHh-cCCC-CeEEEEeccCChhHHHHHHH--H-H--HHHHHHHhccccccCCcc
Q 013383 289 -LGRKRAIKFVVDAGTGTTAVGLGLGAIC-LGLP-WEVTAIALVDTIDGYKQQEK--N-L--ISEFKRLFGFLLKKSSLN 360 (444)
Q Consensus 289 -~g~~~~d~vvv~vGtGgt~aGl~~~~~~-~g~~-~~vigV~~~~~~~~~~~~~~--~-l--~~~~~~~i~~~~~~~~~~ 360 (444)
.++..||+||+|+|+||++.|++.+++. +++. ++|+|||+++....+.+... + . +.+-..++..++ ...
T Consensus 220 ~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~~~~~g~~~~~~g~~~Tiadgl---~~~ 296 (396)
T TIGR03528 220 EQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSAIADDGKPHFVTGDMATIMAGL---ACG 296 (396)
T ss_pred hcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHHHhcCCCEEEeCCCccceeccc---ccC
Confidence 2333699999999999999999998844 4554 59999999987654443211 0 0 000001122211 111
Q ss_pred cccccceeeeecccCCeEEecChHHHHHHHHHHH----HhCCcccccccHHHHHHHHHHhh---------h-cCCCCCeE
Q 013383 361 EVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ----LTGILVDPVYTLAAWEMATLLSD---------E-KLKQDADV 426 (444)
Q Consensus 361 ~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~----~eGI~vEP~ysaaa~aal~~l~~---------~-~~~~g~~V 426 (444)
.++...+.+++++.++.+.|+|+++.+++++|++ ++++++||+ +|+++|++..++. + .+.++++|
T Consensus 297 ~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~eps-ga~~~Aalaa~~~~~~~~~~~~~~~~~~~~~v 375 (396)
T TIGR03528 297 EPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGES-GAVGTGLLAAVMTNPDYKELREKLQLDKNSRV 375 (396)
T ss_pred CccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCc-HHHHHHHHHHHHhCchhHHHHHhcCCCCCCEE
Confidence 2223345567788899999999999999999998 579999997 5778755533221 1 24458899
Q ss_pred EEEEcCCCccchhhh
Q 013383 427 VMLHTGGTLGMFGLA 441 (444)
Q Consensus 427 v~i~TGG~~~l~~~~ 441 (444)
|+|+||||++..-+.
T Consensus 376 v~i~tggn~d~~~~~ 390 (396)
T TIGR03528 376 LLISTEGDTDPDNYR 390 (396)
T ss_pred EEEECCCCCCHHHHH
Confidence 999999999876554
No 77
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-39 Score=317.90 Aligned_cols=288 Identities=15% Similarity=0.103 Sum_probs=219.9
Q ss_pred cccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHH-HHhcCCCeEEEeCcccchHH
Q 013383 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPL-LEDHIVTDLVTCGGCQSAHA 155 (444)
Q Consensus 77 ~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~-a~~~g~~~Vvt~G~s~GNhg 155 (444)
.+-.|||.+ ..-+++.+ |.++|+|||||| | +||||.|++.|++.. +++..+.+||++ |.||||
T Consensus 63 ~~~~TPl~~---s~~lS~~~---------g~~vyLK~E~lQ-p-sgSFK~RGa~~~~~kla~~~~~~gVias--SaGNha 126 (457)
T KOG1250|consen 63 VIVETPLLK---SVALSKKA---------GMPVYLKREDLQ-P-SGSFKIRGAGNALQKLAKQQKKAGVIAS--SAGNHA 126 (457)
T ss_pred ceecccchh---hhhhhhhc---------CCceEEEehhcc-c-ccceehhhHHHHHHHHHHhhhcCceEEe--cCccHH
Confidence 457899999 44444433 579999999999 7 899999999998876 455557899986 559999
Q ss_pred HHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHH
Q 013383 156 TAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASL 234 (444)
Q Consensus 156 ~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~ 234 (444)
+|+|++|+++|++|+||||..+|..+ ....+-+|| |+..+. .|+. +. ++|.++|.
T Consensus 127 ~a~Ayaa~~LgipaTIVmP~~tp~~k---iq~~~nlGA~Vil~G~-~~de---Ak-~~a~~lAk---------------- 182 (457)
T KOG1250|consen 127 QAAAYAARKLGIPATIVMPVATPLMK---IQRCRNLGATVILSGE-DWDE---AK-AFAKRLAK---------------- 182 (457)
T ss_pred HHHHHHHHhcCCceEEEecCCChHHH---HHHHhccCCEEEEecc-cHHH---HH-HHHHHHHH----------------
Confidence 99999999999999999999888653 335688998 766554 4553 22 12333322
Q ss_pred HhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHH
Q 013383 235 TAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGA 314 (444)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~ 314 (444)
..+-.|+.|+ .+|..+.|..|++.||.+|+. ..++.|||||||||+++|++.++
T Consensus 183 ---------------------e~gl~yI~pf--DhP~I~aGqgTig~EIl~ql~---~~~~AI~vpVGGGGLiaGIat~v 236 (457)
T KOG1250|consen 183 ---------------------ENGLTYIPPF--DHPDIWAGQGTIGLEILEQLK---EPDGAIVVPVGGGGLIAGIATGV 236 (457)
T ss_pred ---------------------hcCceecCCC--CCchhhcCcchHHHHHHHhhc---CCCCeEEEecCCchhHHHHHHHH
Confidence 1223455554 468888888889999999973 23459999999999999999999
Q ss_pred HhcCCCCeEEEEeccCChhHHHHHHHH------HHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHH
Q 013383 315 ICLGLPWEVTAIALVDTIDGYKQQEKN------LISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 388 (444)
Q Consensus 315 ~~~g~~~~vigV~~~~~~~~~~~~~~~------l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a 388 (444)
+..+|.++|||||..+....-.+...+ .+..+++.++ ++.++..++.+...+.++.+.|.|+++..+
T Consensus 237 k~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~Adgla-------V~~Vg~~tf~~a~~~~d~vvvV~~~ei~aa 309 (457)
T KOG1250|consen 237 KRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLA-------VKTVGENTFELAQKLVDRVVVVEDDEIAAA 309 (457)
T ss_pred HHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccc-------cchhhHHHHHHHHhcCceEEEeccHHHHHH
Confidence 999999999999999876422221110 1233444333 344566788888888999999999999999
Q ss_pred HHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchh
Q 013383 389 CHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFG 439 (444)
Q Consensus 389 ~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~ 439 (444)
|.++.+++.+++||+ .|+++|+++.. +-.-.++++||.+++|||.+...
T Consensus 310 I~~l~edek~vvEpA-gaaaLaai~~~-~~~~lk~~~vv~ilsG~n~~~~~ 358 (457)
T KOG1250|consen 310 ILRLFEDEKMVVEPA-GAAALAAIYSG-KLNHLKGKKVVSILSGGNIDFDS 358 (457)
T ss_pred HHHHHHhhhheeccc-hHHHHHHHHhc-cccccCCceEEeecccCCCCccc
Confidence 999999999999998 58999999987 32334789999999999987543
No 78
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=3.7e-38 Score=324.75 Aligned_cols=289 Identities=15% Similarity=0.138 Sum_probs=213.4
Q ss_pred ccCCCCCccccccccccccCCCccccCCCCeEEE-------EeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcc
Q 013383 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYV-------VRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGC 150 (444)
Q Consensus 78 ~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~v-------KrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s 150 (444)
+|.|||++ .+++++.+|. .+||+ |+|++| | +||||||.+.+++..+.+.|.+.||+. |
T Consensus 60 ~g~tpl~~---~~~L~~~lG~--------~~v~~K~e~~~~K~E~~n-p-TGSFKdRga~~~i~~a~~~g~~~Vv~a--S 124 (398)
T TIGR03844 60 RGGPVTYK---SEGLARELGL--------SDLYITFSGYWPERGAFM-R-TCSFKELEALPTMQRLKERGGKTLVVA--S 124 (398)
T ss_pred CCCCceee---hHHHHHHhCC--------CeEEEEecCcccchhccC-C-ccccHHHHHHHHHHHHHHcCCCEEEEE--C
Confidence 47899999 8888777652 38999 666688 7 899999999999999999999999986 6
Q ss_pred cchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhh
Q 013383 151 QSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEI 229 (444)
Q Consensus 151 ~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~ 229 (444)
+||||+|+|++|+++|++|+||||...+. + .+ ..++.||+ |+.+++ .|++..+. |++++
T Consensus 125 sGN~g~alA~~aa~~Gi~~~I~vP~~~~~-~-~~-~~~~~~ga~vv~v~g-~~d~a~~~----a~~~a------------ 184 (398)
T TIGR03844 125 AGNTGRAFAEVSAITGQPVILVVPKSSAD-R-LW-TTEPASSVLLVTVDG-DYTDAIAL----ADRIA------------ 184 (398)
T ss_pred CCHHHHHHHHHHHHcCCcEEEEECCChHH-H-HH-HHhhCCcEEEEECCC-CHHHHHHH----HHHHH------------
Confidence 79999999999999999999999987542 1 22 22477888 888875 46653322 11111
Q ss_pred HHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHH
Q 013383 230 FEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVG 309 (444)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aG 309 (444)
+.. . ++.+.+..||...+|++|+++||+||+ + ..||+||+|+|+|+..+|
T Consensus 185 -------------------------~~~-g-~~~~~~~~~p~~ieG~~Ti~~Ei~eql--~-~~PD~VvvPvG~G~~~~~ 234 (398)
T TIGR03844 185 -------------------------TLP-G-FVPEGGARNVARRDGMGTVMLDAAVTI--G-SLPDHYFQAVGSGTGGIA 234 (398)
T ss_pred -------------------------HhC-C-ccccCCCCCHHHHhhHHHHHHHHHHHc--C-CCCCEEEEecCCCHHHHH
Confidence 111 2 233444458999999999999999995 3 259999999999999999
Q ss_pred HHHHHHhc---C----CCCeEEEEeccCChhHHHHHHHH--HH------H----HHHHHhccccccCCcccc-cc---cc
Q 013383 310 LGLGAICL---G----LPWEVTAIALVDTIDGYKQQEKN--LI------S----EFKRLFGFLLKKSSLNEV-DG---EI 366 (444)
Q Consensus 310 l~~~~~~~---g----~~~~vigV~~~~~~~~~~~~~~~--l~------~----~~~~~i~~~~~~~~~~~~-~~---~~ 366 (444)
+++++.++ | ..+++++||+++....+.+...+ .. . .+.+++...+ ....+ .. ..
T Consensus 235 ~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l---~i~~p~~~~~~~~ 311 (398)
T TIGR03844 235 AWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAENSIEEVYSDVL---TNRTPPYGVTGGV 311 (398)
T ss_pred HHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCccccccccceeccee---eeCCCCcchHHHH
Confidence 99999863 2 34799999999976544332211 00 0 0001222111 01111 11 23
Q ss_pred eeeeecccCCeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCCc
Q 013383 367 VHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTL 435 (444)
Q Consensus 367 ~~l~~~~~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~~ 435 (444)
++.++++.+..+.|+|+|+.+|+++|++++||++||+ +|+++|+++++.++ .+.++++||+|+||+..
T Consensus 312 l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa-~A~alAal~k~~~~g~i~~~~~Vv~vlTG~gl 380 (398)
T TIGR03844 312 FDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILPA-AAVAVAALVKAVESGFIGPDDDILLNITGGGY 380 (398)
T ss_pred HHHHHHhCCEEEEECHHHHHHHHHHHHhhCCcccccc-HHHHHHHHHHHHHhCCCCCCCeEEEEECCcch
Confidence 5667888999999999999999999999999999998 68999999998764 36678999999999764
No 79
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-35 Score=287.94 Aligned_cols=341 Identities=16% Similarity=0.139 Sum_probs=241.7
Q ss_pred ccchhhHHHHHHh---hhhcccCCC---ccccccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeCC
Q 013383 42 RMSGEELLSRLLD---RKWALTSPD---SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDD 115 (444)
Q Consensus 42 ~~~~e~~~~~l~~---~~w~~~~~~---~~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEd 115 (444)
...||+|+..|.| ..++..... +++..+-. |++++|||++ .+||++.++- |++||+||||
T Consensus 82 ~yvPE~L~h~l~ELek~f~~~~~d~df~ee~~eiy~----y~gRpspL~~---AkRLte~~q~-------ga~IylKrEd 147 (477)
T KOG1395|consen 82 PYVPEALAHCLPELEKQFYTAERDEDFWEEFLEIYK----YLGRPSPLIR---AKRLTEHCQT-------GARIYLKRED 147 (477)
T ss_pred ccChHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH----HcCCCchhHH---HHHHHHHhCC-------CCEEEEEecC
Confidence 4568999988877 233332211 23322221 4899999999 9999998764 7899999999
Q ss_pred CCCCCCcchhhHHHHhhHHH---HHhcCCCeEEE-eCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhC
Q 013383 116 LLHPLVNGNKARKMDALLPL---LEDHIVTDLVT-CGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIY 191 (444)
Q Consensus 116 l~~p~~ggnK~Rkl~~~l~~---a~~~g~~~Vvt-~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~ 191 (444)
+|| +|| +|+++.+++ |++.|+++||+ +|+.| ||.|+|.+|+++|++|+|||..++-+++..|+++||.+
T Consensus 148 lnh--~Gs---HKiNnav~QallakrlGkknviaETGAGQ--hGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrll 220 (477)
T KOG1395|consen 148 LNH--TGS---HKINNAVAQALLAKRLGKKNVIAETGAGQ--HGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLL 220 (477)
T ss_pred CCc--ccc---CCcccHHHHHHHHHHhcccceeeccCCCc--cchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHh
Confidence 996 789 455666666 68999999998 78755 99999999999999999999998888888899999999
Q ss_pred Cc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccH
Q 013383 192 GK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDA 270 (444)
Q Consensus 192 Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np 270 (444)
|| |+.|+.++...+++..+ ..+.|+.++..++|. ++ .+.+++|| |
T Consensus 221 GAkV~pv~sGt~tLrda~se----------a~r~wvt~~ett~y~--------------~g--s~~gphp~--------p 266 (477)
T KOG1395|consen 221 GAKVHPVTSGTRTLRDATSE----------AGRLWVTNSETTHYA--------------AG--SAIGPHPY--------P 266 (477)
T ss_pred CceEeecCCCceehhcccch----------hhhhhhhhhheeeee--------------ec--ccCCCCCc--------H
Confidence 98 99999887666665543 357899887776664 33 34566666 6
Q ss_pred HHHHHHHHH-HHHHHHhH-H-cCCCCcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCChh--HHHHHH-----H
Q 013383 271 VALLGVFRL-LQYLSQDH-L-LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTID--GYKQQE-----K 340 (444)
Q Consensus 271 ~~~~G~~t~-~~Ei~~q~-~-~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~~--~~~~~~-----~ 340 (444)
..+.-++++ +.|-..|. + ++ ..||.||.|+|+|++.+|++.-|. ....++++||++.+... ..++.. .
T Consensus 267 t~vr~fhsvIg~Et~~Q~me~~g-~~PD~vvaCvGGGSN~~Glf~pF~-~dk~v~~igveaagdg~dtp~hsatltagd~ 344 (477)
T KOG1395|consen 267 TVVRTFHSVIGKETKIQQMEKFG-KLPDAVVACVGGGSNSAGLFSPFI-RDKSVGMIGVEAAGDGVDTPKHSATLTAGDV 344 (477)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhC-CCCCeEEEeccCCCccccccchhh-ccchhheeeeeecccccCCcchhceeecccc
Confidence 677776665 47766554 3 45 589999999999999999999997 45578899999876432 111100 0
Q ss_pred HHHHHHH-----HHhcccccc------CCcccccccceeeeecccCCeEEecChHHHHHHHHHHHHhCCcccccccHHHH
Q 013383 341 NLISEFK-----RLFGFLLKK------SSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAW 409 (444)
Q Consensus 341 ~l~~~~~-----~~i~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~ 409 (444)
+..++.. +..|.-+.| ...+.++++.-+|.+.-.-..+.++|.|.++..+++++.|||.--|- +.-|+
T Consensus 345 Gv~hG~~ty~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~isitd~eclegfk~~srlEGIIPAlE-ssHAv 423 (477)
T KOG1395|consen 345 GVFHGVTTYVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEFISITDAECLEGFKQLSRLEGIIPALE-SSHAV 423 (477)
T ss_pred cccccceeeeeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcccccCCc-hhhHH
Confidence 1111110 111111111 12222233322333333445688999999999999999999997776 45788
Q ss_pred HHHHHHhhhcCCCCCeEEEEEcC-CCccchhhh
Q 013383 410 EMATLLSDEKLKQDADVVMLHTG-GTLGMFGLA 441 (444)
Q Consensus 410 aal~~l~~~~~~~g~~Vv~i~TG-G~~~l~~~~ 441 (444)
++...+.+ .+++++.||+-.|| |-.++.++.
T Consensus 424 a~~~~lck-~l~~~k~ivi~~sGrGdkDvqS~~ 455 (477)
T KOG1395|consen 424 AGEAELCK-TLPEDKVIVINISGRGDKDVQSVA 455 (477)
T ss_pred HHHHHhcc-ccCCCcEEEEEecCCCCchHHHHH
Confidence 88777764 56788999999999 777776644
No 80
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.2e-33 Score=283.26 Aligned_cols=306 Identities=19% Similarity=0.174 Sum_probs=221.6
Q ss_pred hhhccc--CCCccccccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhh
Q 013383 55 RKWALT--SPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDAL 132 (444)
Q Consensus 55 ~~w~~~--~~~~~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~ 132 (444)
..|.+. .|..++...++.+ |.||+++ .+++...+|. .+.++|+|.|.+| | |+|||||.+..+
T Consensus 54 ~~~~~~~~lp~~~~~~~~l~e-----g~tp~~~---~~~~~~~l~~------~~~~lyvk~~~~n-P-T~SFKDrg~~~~ 117 (411)
T COG0498 54 LAWRYLELLPVGEIPAVSLGE-----GGTPLYK---APALAAPLGV------LNDNLYVKELGHN-P-TGSFKDRGMTVL 117 (411)
T ss_pred hHHHHHHHCCCCCcchhhhhh-----ccCcccc---Ccccchhhcc------CCcceehhhhccC-C-CcchhhhhHHHH
Confidence 345433 4433555566665 9999999 7887776652 1236999999998 7 899999999999
Q ss_pred HHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCC-CCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHH
Q 013383 133 LPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE-QPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLK 210 (444)
Q Consensus 133 l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~-~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~ 210 (444)
+..+.+.|..+|++ +|+||+|+|+|+++++.|++|+|++|.. .+. ++..+|..||+ ++.|++. |++..+..+
T Consensus 118 ~~~~~~~g~~~I~~--ASSGnTgAs~aaya~rag~~v~Vl~P~g~vs~---~k~~q~~~~ga~~i~v~G~-fDda~~~vk 191 (411)
T COG0498 118 VSLAKELGAKTILC--ASSGNTGASAAAYAARAGLKVFVLYPKGKVSP---GKLAQMLTLGAHVIAVDGN-FDDAQELVK 191 (411)
T ss_pred HHHHHHhcCCEEEE--eCCchHHHHHHHHhccCCCeEEEEecCCCCCH---HHHHHHHhcCCEEEEEcCc-HHHHHHHHH
Confidence 99999988656665 3789999999999999999999999986 543 45668899998 9999874 776544432
Q ss_pred HHhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcC
Q 013383 211 SYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLG 290 (444)
Q Consensus 211 ~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g 290 (444)
+. .+. ..++...+..||....|.+++++||.+|+ +
T Consensus 192 ~~-----------------------------------------~~~--~~~~~~~nsiNp~rlegq~t~~fe~~~ql--~ 226 (411)
T COG0498 192 EA-----------------------------------------ANR--EGLLSAVNSINPYRLEGQKTYAFEIAEQL--G 226 (411)
T ss_pred HH-----------------------------------------Hhh--CCceeeccccCHHHhhhhhhhHhHHHHHh--C
Confidence 21 111 11233344568999999999999999995 5
Q ss_pred CCCcCEEEEeCCChhhHHHHHHHHHhcCC------CCeEEEEeccCChhHHHHHHHH--HHHHHHHHhccccccCCcccc
Q 013383 291 RKRAIKFVVDAGTGTTAVGLGLGAICLGL------PWEVTAIALVDTIDGYKQQEKN--LISEFKRLFGFLLKKSSLNEV 362 (444)
Q Consensus 291 ~~~~d~vvv~vGtGgt~aGl~~~~~~~g~------~~~vigV~~~~~~~~~~~~~~~--l~~~~~~~i~~~~~~~~~~~~ 362 (444)
+..||+|+||+|.||++.|+++||+++-+ .+++.+|++++........... ...+++..+..+ .|.++.
T Consensus 227 ~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~-~p~n~~-- 303 (411)
T COG0498 227 WKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIG-NPSNWE-- 303 (411)
T ss_pred CCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhcccccccccccccccccC-CCCCHH--
Confidence 56899999999999999999999997522 4577888887743322221110 111222211111 111111
Q ss_pred cccceeeeecccCCeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCC
Q 013383 363 DGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGG 433 (444)
Q Consensus 363 ~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG 433 (444)
..+....+..+....|+|+|++++++++++++|+++||. ||++++++.++.++.+.++.++|++.||.
T Consensus 304 --r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~-sA~ava~l~k~~~~~i~~~~~vV~v~Tg~ 371 (411)
T COG0498 304 --RALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEPH-SAVAVAALLKLREKIIDPDETVVLVLTGH 371 (411)
T ss_pred --HHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcccCcc-HHHHHHHHHHHHHhhcCCCCeEEEEecCC
Confidence 112223444566889999999999999999999999998 79999999998765566788999999994
No 81
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-33 Score=272.87 Aligned_cols=280 Identities=16% Similarity=0.105 Sum_probs=200.8
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC-----CeEEEeCcccch
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQSA 153 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~-----~~Vvt~G~s~GN 153 (444)
|+|||+. ++++.. |+ .++||+|+|.+| | +||-|||....|+.+|+..|. ++||- +++||
T Consensus 51 G~TPlv~---ln~i~~--g~-------~~~i~~K~E~~~-p-~~SvKdRia~sMi~~Ae~~G~i~pg~stliE--pTSGN 114 (362)
T KOG1252|consen 51 GNTPLVK---LNKIAG--GC-------VARIAAKLEYMN-P-GGSVKDRIAWSMIEDAEKKGLITPGKSTLIE--PTSGN 114 (362)
T ss_pred CCCceEE---eccccC--Cc-------cceEEEEeeecC-C-cccHHHHHHHHHHHHHHHcCCccCCceEEEe--cCCCc
Confidence 9999999 999843 33 579999999998 7 899999999999999999874 45553 47899
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhH-HHHHHHHhhhhhcCCCCccchhhhHH
Q 013383 154 HATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHR-IEMLKSYANLVAGNNGDVVWCNEIFE 231 (444)
Q Consensus 154 hg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~-~~~~~~~A~~~a~~~g~~~w~~~~~~ 231 (444)
+|.++|++|+..|++|+++||+....++ ..+++.||+ |+++|....... +.+.
T Consensus 115 tGigLA~~~a~~Gyk~i~tmP~~ms~Ek---~~~l~a~Gaeii~tp~a~~~~~~e~ai---------------------- 169 (362)
T KOG1252|consen 115 TGIGLAYMAALRGYKCIITMPEKMSKEK---RILLRALGAEIILTPPAAGMKGPESAI---------------------- 169 (362)
T ss_pred hHHHHHHHHHHcCceEEEEechhhhHHH---HHHHHHcCCEEEecChHHccCChHHHH----------------------
Confidence 9999999999999999999999887653 446799998 999986321111 1111
Q ss_pred HHHHhhhhhccccccccccccccccCCcEEEecCCCccHHH-HHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHH
Q 013383 232 ASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 310 (444)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~-~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl 310 (444)
+.+.++.++.++.| +.++..||-. ..+|.+++.||++|+. ..+|.||.++|||||+.|+
T Consensus 170 ----------------~~a~~l~~~~pna~-~l~Qf~np~Np~~hy~ttg~EI~~q~~---g~vDi~V~gaGTGGTitgv 229 (362)
T KOG1252|consen 170 ----------------GKAEELLNKTPNAY-ILDQFHNPGNPLAHYETTGPEIWRQLD---GKVDIFVAGAGTGGTITGV 229 (362)
T ss_pred ----------------HHHHHHHHhCCChH-HHHHhcCCCCcccccccccHHHHHHhc---CCCCEEEeccCCCceeech
Confidence 11122222333443 3344333321 2689999999999972 4799999999999999999
Q ss_pred HHHHHhcCCCCeEEEEeccCChhHHHHHHH-HH-HHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHH
Q 013383 311 GLGAICLGLPWEVTAIALVDTIDGYKQQEK-NL-ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 388 (444)
Q Consensus 311 ~~~~~~~g~~~~vigV~~~~~~~~~~~~~~-~l-~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a 388 (444)
.+.+++.+++++|++|++..+.- .+... +. ...+ +.+|.+++|. .++....+..+.+.+++++.+
T Consensus 230 GRylke~~~~~kVv~vdp~~S~~--~~~~~~g~~~~~I-~GIGyg~~p~----------~ld~~~vd~~~~~~~d~A~~~ 296 (362)
T KOG1252|consen 230 GRYLKEQNPNIKVVGVDPQESIV--LSGGKPGPTFHKI-QGIGYGFIPT----------TLDTKLVDEVLKVSSDEAIEM 296 (362)
T ss_pred hHHHHHhCCCCEEEEeCCCccee--ccCCCCCCCccce-eccccCcCcc----------ccchHHHHHHHHhCCHHHHHH
Confidence 99999999999999999988652 11111 00 0111 2334443332 233344556778899999999
Q ss_pred HHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEE-EcCC
Q 013383 389 CHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVML-HTGG 433 (444)
Q Consensus 389 ~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i-~TGG 433 (444)
.++|+.+||++++.+ ||++++++++++++.-..++-||++ -++|
T Consensus 297 Ar~La~eeGll~G~S-SGan~~aAl~~a~~~en~~kliV~~~pd~g 341 (362)
T KOG1252|consen 297 ARRLALEEGLLVGIS-SGANVAAALKLAKRPENAGKLIVVTFPDFG 341 (362)
T ss_pred HHHHHHhhCeeeccc-chHHHHHHHHHHhccccCCcEEEEECCCcc
Confidence 999999999999986 7888888888776432334444444 3444
No 82
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=99.97 E-value=2e-30 Score=246.77 Aligned_cols=287 Identities=15% Similarity=0.095 Sum_probs=207.0
Q ss_pred ccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC---CeEEEeCcccchH
Q 013383 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV---TDLVTCGGCQSAH 154 (444)
Q Consensus 78 ~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~---~~Vvt~G~s~GNh 154 (444)
=|+|||++ ++.|++.- |++|+.|.|.+| | .||-|||-+.+++..|++.|. -..|+-| +.||+
T Consensus 47 IGnTplir---i~sLs~aT---------GcnIlaK~Ef~N-P-ggS~KDRvAl~iir~Aee~GkL~~gg~v~EG-taGsT 111 (391)
T KOG1481|consen 47 IGNTPLIR---INSLSNAT---------GCNILAKAEFLN-P-GGSVKDRVALYIIRTAEEKGKLVRGGTVVEG-TAGST 111 (391)
T ss_pred hCCCceEE---eecccccc---------ccchhhhhhccC-C-CCChhhhhHHHHHHHHHHcCCcccCceEEec-CCCcc
Confidence 39999999 88777653 689999999998 7 799999999999999999886 2444434 78999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHH
Q 013383 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEAS 233 (444)
Q Consensus 155 g~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~ 233 (444)
|+++|..|..+|++|+||||.+++.++ ..+.+.+|| |..|+.....+....... |++.|
T Consensus 112 gIslA~v~~a~Gyk~~I~mPddqs~eK---~~ile~LGA~V~rV~pa~i~dp~~yvn~-Arr~a---------------- 171 (391)
T KOG1481|consen 112 GISLAHVARALGYKCHIYMPDDQSQEK---SDILEFLGAEVHRVPPAPIVDPNHYVNQ-ARRAA---------------- 171 (391)
T ss_pred chhHHHhhhhcCcceEEECCChHHHHH---HHHHHHhcceeeecCCcCccChhHHHHH-HHHHh----------------
Confidence 999999999999999999999887653 346799998 999887655444333211 11111
Q ss_pred HHhhhhhccccccccccccccc--cCCcEEEecCCCccHHH-HHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHH
Q 013383 234 LTAQKSRASCLGQMDAHKGIDN--CRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 310 (444)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~ip~g~~np~~-~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl 310 (444)
.++.. .+-+.| ...|..|+.. ..+|.+.+.|||.|.+ ...|.+++.+|||||++|+
T Consensus 172 -----------------n~~~~~~ngi~g~-fAdQFeN~AN~~aHyetTGPEIw~Qtk---GniDaFia~~GTGGTiaGV 230 (391)
T KOG1481|consen 172 -----------------NETPNASNGIRGW-FADQFENVANWLAHYETTGPEIWHQTK---GNIDAFIAGTGTGGTIAGV 230 (391)
T ss_pred -----------------hhcccccCCcccc-hhhhhcCHHHHHHHhcCcCcHHHHhhc---CCcceEEeccCCCcchHHH
Confidence 11111 111222 3344556655 4588999999999974 3799999999999999999
Q ss_pred HHHHHhcCCC-CeEEEEeccCChhHHHHHHH----------------HHHHHHHHHhccccccCCcccccccceeeeecc
Q 013383 311 GLGAICLGLP-WEVTAIALVDTIDGYKQQEK----------------NLISEFKRLFGFLLKKSSLNEVDGEIVHWVERC 373 (444)
Q Consensus 311 ~~~~~~~g~~-~~vigV~~~~~~~~~~~~~~----------------~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~ 373 (444)
.+.+++..+. +.++-..|-++ .+..++. ...+.+.+.+|.+ +++ ..|.+.+++
T Consensus 231 skyLkek~~~~v~~~laDPpGS--GlYnkV~~GVmy~~~e~eG~r~r~q~dti~EGIGin-------RiT-~Nf~m~~~l 300 (391)
T KOG1481|consen 231 SKYLKEKSDGRVAVFLADPPGS--GLYNKVNYGVMYDHIETEGTRRRNQVDTITEGIGIN-------RIT-GNFQMAEDL 300 (391)
T ss_pred HHHHhhcCCCceEEEEeCCCCC--chhhhhhhhhhhhhhhhcCcccCCCcchhhhccccc-------ccc-cccccchhh
Confidence 9999976543 44444444333 1111111 1123344444332 222 356677888
Q ss_pred cCCeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 013383 374 RPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG 432 (444)
Q Consensus 374 ~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TG 432 (444)
.|+.|.++|++.+++.+.|..++|++++.+ |+....++.++++ .+.+|.+||.|+|-
T Consensus 301 iD~a~rv~Deqai~Msr~Ll~~dGLFvGsS-sa~N~VaAv~vAk-~LgpG~~iVtilCD 357 (391)
T KOG1481|consen 301 IDDAMRVTDEQAINMSRYLLDNDGLFVGSS-SALNCVAAVRVAK-TLGPGHTIVTILCD 357 (391)
T ss_pred hhhheecChHHHHHHHHHhhhcCceEecch-hhHHHHHHHHHHH-hcCCCceEEEEEeC
Confidence 999999999999999999999999999965 6777666666654 57899999999985
No 83
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.89 E-value=3.5e-22 Score=194.26 Aligned_cols=314 Identities=16% Similarity=0.107 Sum_probs=195.8
Q ss_pred cccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHH---HHhcCCCeEEE-eCcccc
Q 013383 77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPL---LEDHIVTDLVT-CGGCQS 152 (444)
Q Consensus 77 ~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~---a~~~g~~~Vvt-~G~s~G 152 (444)
.|+||||++ .++|.+.||. ..+||.|.|+.. | +||+|. +-.|.+ ++..|+++|+| +|+.|
T Consensus 75 ~gRPTPL~R---A~~LE~~L~t-------parIYyK~Eg~t-p-tGSHKi---NTAlAqaYyak~eg~~rl~TETGAGQ- 138 (432)
T COG1350 75 IGRPTPLIR---AKNLEEALGT-------PARIYYKYEGVT-P-TGSHKI---NTALAQAYYAKKEGAKRLTTETGAGQ- 138 (432)
T ss_pred hCCCCchhh---hhhHHHHhCC-------CcEEEEEecccC-C-CCCCCc---chHHHHHHHHHhcCceeeecccCCch-
Confidence 679999999 9999999875 789999999997 6 899655 445555 68899999998 88755
Q ss_pred hHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcC---CCCccchhh
Q 013383 153 AHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGN---NGDVVWCNE 228 (444)
Q Consensus 153 Nhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~---~g~~~w~~~ 228 (444)
.|.|++.+|+.+|++|+|||-...=..+.-...+|++||+ |+.-+.. .++ .-+ +.+.+. .|.....
T Consensus 139 -WGsAlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~-~Te---~Gr---k~l~e~p~hPGSLGIA-- 208 (432)
T COG1350 139 -WGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSE-LTE---FGR---KILKEDPDHPGSLGIA-- 208 (432)
T ss_pred -HHHHHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcc-hhH---HHH---HHHhcCCCCCchhHHH--
Confidence 9999999999999999999975321112123347899998 7765542 222 111 111111 1111110
Q ss_pred hHHHHHHhhhhhcccccccccccccc-ccCCcEEEecCCCccHHHHHHHHHH-HHHHHHhHH-cCCCCcCEEEEeCCChh
Q 013383 229 IFEASLTAQKSRASCLGQMDAHKGID-NCRKKVLIVNEGAGDAVALLGVFRL-LQYLSQDHL-LGRKRAIKFVVDAGTGT 305 (444)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~ip~g~~np~~~~G~~t~-~~Ei~~q~~-~g~~~~d~vvv~vGtGg 305 (444)
+.+ +-+.+ +.++.-|.. - +--..+.=++|+ ++|..+|++ .+ ..||.+|-|||||+
T Consensus 209 -ISE-----------------AiE~al~~~~~kY~l-G--SVlnhvllhQTViGlEakkQle~~~-e~PDv~igcvGGGS 266 (432)
T COG1350 209 -ISE-----------------AIEYALKNENTKYSL-G--SVLNHVLLHQTVIGLEAKKQLEQAG-EDPDVIIGCVGGGS 266 (432)
T ss_pred -HHH-----------------HHHHHHhCCCceecc-h--hHHHHHHHHHHHHhHHHHHHHHhcC-CCCCEEEEeccCCC
Confidence 111 11111 122233433 1 111223334555 599998885 44 57999999999999
Q ss_pred hHHHHHHHHHh---cCC-CCeEEEEeccCChhHHHHHH--------HHHHHHH-HHHhccccccCCcccccccc------
Q 013383 306 TAVGLGLGAIC---LGL-PWEVTAIALVDTIDGYKQQE--------KNLISEF-KRLFGFLLKKSSLNEVDGEI------ 366 (444)
Q Consensus 306 t~aGl~~~~~~---~g~-~~~vigV~~~~~~~~~~~~~--------~~l~~~~-~~~i~~~~~~~~~~~~~~~~------ 366 (444)
+++|+..-|.. .|. ..++|+|++...+... ... ..+..-+ .-++|-+++|..+- .+...
T Consensus 267 Nfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT-~GeY~YD~gDtagltPllKMyTlGhd~vpPpih-AgGLRYHG~aP 344 (432)
T COG1350 267 NFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLT-KGEYRYDFGDTAGLTPLLKMYTLGHDYVPPPIH-AGGLRYHGVAP 344 (432)
T ss_pred ccccccchhhhhhhcCCceeEEEEeCCccCCccc-cceeeccCCchhccchhhhhhccCCCccCCCcc-cccccccCcCh
Confidence 99999988743 232 3899999987655311 110 0110000 01334333332211 00011
Q ss_pred -ee-eeecccCCeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhc--CCCCCeEEEEEcC-CCccchhhh
Q 013383 367 -VH-WVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK--LKQDADVVMLHTG-GTLGMFGLA 441 (444)
Q Consensus 367 -~~-l~~~~~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~--~~~g~~Vv~i~TG-G~~~l~~~~ 441 (444)
+. +++.-.-.....+.+|++++.+.+++.|||.--|- |+-|+.++++.+.+. -.+.+.|+|=++| |.+++.++.
T Consensus 345 tls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPE-saHAi~~aid~A~~a~~~geekvI~fnlSGHGllDL~~Y~ 423 (432)
T COG1350 345 TLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAPE-SAHAIKAAIDEALKAREEGEEKVILFNLSGHGLLDLSAYD 423 (432)
T ss_pred HHHHHHHcCcccceecChHHHHHHHHHHHHhcCCccCCc-chhhHHHHHHHHHhccccCceeEEEEeccCccccchhhHH
Confidence 11 12222223456678999999999999999999997 688888888765432 1223467788999 999988764
No 84
>PRK09225 threonine synthase; Validated
Probab=99.87 E-value=2.6e-21 Score=202.54 Aligned_cols=271 Identities=14% Similarity=0.096 Sum_probs=175.2
Q ss_pred eEEEEeCCCCCCCCcchhhHHHHh---hHHHHHhcCCCeEEEeCcccchHHHHH-HHHHHHhCCeEEEEecCC-CCccch
Q 013383 108 CFYVVRDDLLHPLVNGNKARKMDA---LLPLLEDHIVTDLVTCGGCQSAHATAV-AVSCAERGLKSHLLLRGE-QPQILT 182 (444)
Q Consensus 108 ~l~vKrEdl~~p~~ggnK~Rkl~~---~l~~a~~~g~~~Vvt~G~s~GNhg~al-A~aaa~~Gl~~~i~~~~~-~~~~~~ 182 (444)
++|+.--..+ | |++||||.+.. ++..+.+.+...|++. |+||+|.|+ |+++++.|++|+|++|.. .+..
T Consensus 97 ~~~~lELfhG-P-T~sFKD~a~~~l~~~l~~a~~~~~~~Il~A--TSGdtG~Aa~aaf~~~~gi~~~V~~P~g~vs~~-- 170 (462)
T PRK09225 97 NLYVLELFHG-P-TLAFKDFALQFLAQLLEYVLKGEKITILGA--TSGDTGSAAAEAFRGKPNVRVVILYPKGKVSPV-- 170 (462)
T ss_pred CceeHhhccC-C-ccchhhhHHHHHHHHHHHHHhCCCcEEEEc--CCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHH--
Confidence 4677544554 7 89999999987 7887877335566653 789999998 899999999999999975 5553
Q ss_pred hhhHHHHhC-Cc-E--EEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCC
Q 013383 183 GYNLISTIY-GK-V--TYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRK 258 (444)
Q Consensus 183 ~~~~~~~~~-Ga-V--~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 258 (444)
+..+|..+ |+ | +.|++ .|++.....+... . + .++.+. .
T Consensus 171 -q~~Qm~t~~g~nv~vi~V~G-~fDD~q~~vk~~~----~------------d-------------------~~~~~~-~ 212 (462)
T PRK09225 171 -QEKQMTTLQGDNIHVVAVEG-NFDDCQALVKAAF----N------------D-------------------EELKEK-L 212 (462)
T ss_pred -HHHHHHhhcCCCeEEEEeCC-CHHHHHHHHHHHh----h------------c-------------------hhhhhc-C
Confidence 34577888 75 5 77876 4777555433210 0 0 001111 1
Q ss_pred cEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHhcCCCC-eEEEEeccCChhHHHH
Q 013383 259 KVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPW-EVTAIALVDTIDGYKQ 337 (444)
Q Consensus 259 ~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~-~vigV~~~~~~~~~~~ 337 (444)
..+..+ ..||..+.|+++...|+.+|+......||.|+||+|.||++.|.+.| +.+|.++ |+++++-... .+..
T Consensus 213 ~l~saN--SiN~~Ri~gQ~~yyfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~A-k~mGlpi~kli~A~n~n~--~l~~ 287 (462)
T PRK09225 213 KLSSAN--SINIGRLLAQIVYYFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYA-KKMGLPIKRLIVATNEND--VLTR 287 (462)
T ss_pred ceEEEe--ccCHHHHHHHHHHHHHHHHHhccccCCCCEEEEECCcHHHHHHHHHH-HHcCCCcceEEEEecCCh--HHHH
Confidence 233333 25899999999999999999621112599999999999999999999 5688765 8898873332 2211
Q ss_pred HHH-HH--HHHHHHHhcccc---ccCCcccc-----cc---cceeeee---cccC---------------CeEEecChHH
Q 013383 338 QEK-NL--ISEFKRLFGFLL---KKSSLNEV-----DG---EIVHWVE---RCRP---------------RKFGNVFEGE 385 (444)
Q Consensus 338 ~~~-~l--~~~~~~~i~~~~---~~~~~~~~-----~~---~~~~l~~---~~~~---------------~~~~v~d~e~ 385 (444)
... +. ......++..++ .|.++.++ +. ....+.+ ...+ ..+.++|+|+
T Consensus 288 ~~~~G~y~~~~~~~T~s~amdI~~psn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei 367 (462)
T PRK09225 288 FLKTGVYDPRPTVATLSPAMDISVSSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEET 367 (462)
T ss_pred HHHcCCCccCCCCCCcCchhhcCCCCcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHH
Confidence 110 00 000001111110 01111100 00 0001111 1122 4578899999
Q ss_pred HHHHHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 013383 386 IEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG 432 (444)
Q Consensus 386 ~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TG 432 (444)
.++++++++++|+++||. ||++++++.++. .++.++|++.||
T Consensus 368 ~~ai~~~~~~~G~~~dPh-tAva~aa~~~~~----~~~~~~V~l~Ta 409 (462)
T PRK09225 368 LATIREVYEEYGYLIDPH-TAVAYKAAREYL----DPGEPGVVLSTA 409 (462)
T ss_pred HHHHHHHHHhCCEEECch-HHHHHHHHHHhh----CCCCCEEEEecC
Confidence 999999999999999997 899999998763 346788999988
No 85
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.86 E-value=1.5e-20 Score=196.89 Aligned_cols=273 Identities=14% Similarity=0.117 Sum_probs=175.9
Q ss_pred eEEEEeCCCCCCCCcchhhHHHHhh---HHHHHhc--CCCeEEEeCcccchHHHH-HHHHHHHhCCeEEEEecCC-CCcc
Q 013383 108 CFYVVRDDLLHPLVNGNKARKMDAL---LPLLEDH--IVTDLVTCGGCQSAHATA-VAVSCAERGLKSHLLLRGE-QPQI 180 (444)
Q Consensus 108 ~l~vKrEdl~~p~~ggnK~Rkl~~~---l~~a~~~--g~~~Vvt~G~s~GNhg~a-lA~aaa~~Gl~~~i~~~~~-~~~~ 180 (444)
++|++-...+ | |++||||.+..+ +..+.++ +...|++. |+||+|.| +|+++++.|++|+|++|.. .++.
T Consensus 96 ~~~~lELfhG-P-T~sFKD~a~~~l~~l~~~~~~~~~~~~~Il~A--TSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~vs~~ 171 (460)
T cd01560 96 NLYVLELFHG-P-TLAFKDMALQFLGRLLEYFLKRRNERITILVA--TSGDTGSAAIEGFRGKPNVDVVVLYPKGGVSPI 171 (460)
T ss_pred CcEEeeeeeC-C-CcchHHhHHHHHHHHHHHHHHhcCCCeEEEEc--CCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHH
Confidence 5788888886 7 899999998865 6666554 66667753 78999999 5999999999999999975 5543
Q ss_pred chhhhHHHHhCCc----EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhhhhhcccccccccccccccc
Q 013383 181 LTGYNLISTIYGK----VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNC 256 (444)
Q Consensus 181 ~~~~~~~~~~~Ga----V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (444)
...+|..+|+ ++.|++ .|++.....+.. .. + .++.+
T Consensus 172 ---Q~~Qm~t~g~~Nv~vi~V~G-~fDd~q~~vk~~----~~------------d-------------------~~~~~- 211 (460)
T cd01560 172 ---QELQMTTLPADNVHVVAVEG-DFDDCQSLVKAL----FA------------D-------------------EDFNK- 211 (460)
T ss_pred ---HHHHHHhhCCCceEEEEEcC-CHHHHHHHHHHH----hc------------C-------------------hhhHh-
Confidence 3457888982 777876 477655443321 00 0 00111
Q ss_pred CCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcC-CCCcCEEEEeCCChhhHHHHHHHHHhcCCCC-eEEEEeccCChhH
Q 013383 257 RKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLG-RKRAIKFVVDAGTGTTAVGLGLGAICLGLPW-EVTAIALVDTIDG 334 (444)
Q Consensus 257 ~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g-~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~-~vigV~~~~~~~~ 334 (444)
....+..+ ..||..+.|.++...|+.+|+..+ ...||.|+||+|.||++.|.+.+.+ +|.++ +++++.-+.+...
T Consensus 212 ~~~l~saN--SiN~~Ri~~Q~~yyf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~-mGlpi~kli~a~n~n~il~ 288 (460)
T cd01560 212 KLKLSSAN--SINWARILAQIVYYFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKK-MGLPIKKLIVATNENDVLR 288 (460)
T ss_pred cceEEEEe--ccCHHHHHHHHHHHHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHH-cCCCCccEEEEeCCChHHH
Confidence 11233332 358999999999999999996311 1268999999999999999999965 78754 7888654443211
Q ss_pred -H-HHHHHHHHHHHHHHhccccccCCcccccccceeeeecccC------------------------------CeEEecC
Q 013383 335 -Y-KQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRP------------------------------RKFGNVF 382 (444)
Q Consensus 335 -~-~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~------------------------------~~~~v~d 382 (444)
+ ....-........++..++ ++..+.-.+..+..+....+ ..+.++|
T Consensus 289 ~~~~~G~y~~~~~~~~T~spam-dI~~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD 367 (460)
T cd01560 289 RFFKTGRYDRRESLKQTLSPAM-DILKSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSD 367 (460)
T ss_pred HHHHcCCCcCCCCCCCCcCchh-hcCCCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECH
Confidence 1 1110000000001111110 00000000000001111111 4578999
Q ss_pred hHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 013383 383 EGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG 432 (444)
Q Consensus 383 ~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TG 432 (444)
+|+.++++++++++|+++||. ||++++++.++.++ ++.++|++.||
T Consensus 368 ~ei~~~i~~~~~~~G~~vdPh-tAva~aa~~~~~~~---~~~~~V~l~Ta 413 (460)
T cd01560 368 EETLETIREVYEETGYLIDPH-TAVGVRAAERVRKS---PGTPGVVLSTA 413 (460)
T ss_pred HHHHHHHHHHHHhcCEEECch-HHHHHHHHHHHHhc---cCCCEEEEecC
Confidence 999999999999999999998 89999999886543 35678888887
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.52 E-value=1.8e-13 Score=132.79 Aligned_cols=279 Identities=15% Similarity=0.129 Sum_probs=180.0
Q ss_pred CeEEEEeCCCCCCCCcchhhHHHHh-hHHHH----HhcCC--------------------CeEEEeCcccchHHHHHHHH
Q 013383 107 RCFYVVRDDLLHPLVNGNKARKMDA-LLPLL----EDHIV--------------------TDLVTCGGCQSAHATAVAVS 161 (444)
Q Consensus 107 ~~l~vKrEdl~~p~~ggnK~Rkl~~-~l~~a----~~~g~--------------------~~Vvt~G~s~GNhg~alA~a 161 (444)
.++|+|+|..+ |..||.|.|+--| +|.+| .+.|- +--|+.| |+||.|.++-..
T Consensus 101 G~llLK~DshL-pIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~FFs~ysIaVG-STGNLGlSIGI~ 178 (443)
T COG3048 101 GRLLLKKDSHL-PISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFKDFFSRYSIAVG-STGNLGLSIGIM 178 (443)
T ss_pred cceeeeccCCC-CcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHHHHHHhheEeec-ccCccceehhhh
Confidence 48999999998 7679999998543 55553 44442 2234555 789999999999
Q ss_pred HHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhhhhh
Q 013383 162 CAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSR 240 (444)
Q Consensus 162 aa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~ 240 (444)
.+.+|++++|.|..++-+ .+....|..|- |+.... +|.. +.++ |
T Consensus 179 sA~lGF~vtVHMSADAr~---WKKd~LRs~gV~ViEYe~-DY~~---AVee---------G------------------- 223 (443)
T COG3048 179 SAALGFKVTVHMSADARA---WKKDKLRSHGVTVVEYEQ-DYGV---AVEE---------G------------------- 223 (443)
T ss_pred hhhhcceEEEEecchHHH---HHHHHHHhcCceEEEecc-hhhH---HHHH---------h-------------------
Confidence 999999999999976532 33445688994 666554 3542 2111 0
Q ss_pred ccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHH-cC----CCCcCEEEEeCCChhhHHHHHHHHH
Q 013383 241 ASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHL-LG----RKRAIKFVVDAGTGTTAVGLGLGAI 315 (444)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~-~g----~~~~d~vvv~vGtGgt~aGl~~~~~ 315 (444)
++-++..+.+|+|-.- .+-.-..||.-.+.-|..|++ .| ...|-.|.+|||-||.--|++.|+|
T Consensus 224 ----------Rk~a~~DP~c~FiDDE-~S~~LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLK 292 (443)
T COG3048 224 ----------RKEAESDPNCFFIDDE-NSRTLFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLK 292 (443)
T ss_pred ----------hhhhccCCceEEeccc-chhhhhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhH
Confidence 0112345677777432 123456899777788888874 22 1346679999999999999999998
Q ss_pred h-cCCCCeEEEEeccCChhHHHHHHHHHHHHHH-HHhcccc----ccCCcccccccceeeeecccCCeEEecChHHHHHH
Q 013383 316 C-LGLPWEVTAIALVDTIDGYKQQEKNLISEFK-RLFGFLL----KKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEAC 389 (444)
Q Consensus 316 ~-~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~-~~i~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~ 389 (444)
. .|..+.++-+||.-++.++.---.++.+.+. +-+|... .+..+.++..-.=++.++..++.|.++|+......
T Consensus 293 l~fgd~VhcfFaEPthsPcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL 372 (443)
T COG3048 293 LAFGDHVHCFFAEPTHSPCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLL 372 (443)
T ss_pred hhhcCceEEEEecCCCChHHHHhhhhccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEechHHHHHHH
Confidence 6 4778888889988887755321111111100 0011100 01111111111113456677889999999999999
Q ss_pred HHHHHHhCCcccccccHHHHHHHHHHhhh--------cC----CCCCeEEEEEcCCC
Q 013383 390 HRIAQLTGILVDPVYTLAAWEMATLLSDE--------KL----KQDADVVMLHTGGT 434 (444)
Q Consensus 390 ~~la~~eGI~vEP~ysaaa~aal~~l~~~--------~~----~~g~~Vv~i~TGG~ 434 (444)
++|++.|||.+||+ +-+++++..++.+. .+ -.+..-++|-|||-
T Consensus 373 ~~L~~~e~~rlEPS-alAgm~Gp~~~~~~~~g~~~~~~~~~~~~~natHlvWaTGG~ 428 (443)
T COG3048 373 GWLAQEEGIRLEPS-ALAGMAGPQRVCASVEGYRYRHGFSAEQLNNATHLVWATGGG 428 (443)
T ss_pred HHHHHhcCcccCch-hhhcccCcceeeechhHHHHHhhchhhhhcCeeEEEEecCCC
Confidence 99999999999996 34666665554421 00 12445689999986
No 87
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=58.30 E-value=17 Score=33.94 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=21.5
Q ss_pred ccchHHHHHHHHHHHhCCeEEEEecCC
Q 013383 150 CQSAHATAVAVSCAERGLKSHLLLRGE 176 (444)
Q Consensus 150 s~GNhg~alA~aaa~~Gl~~~i~~~~~ 176 (444)
|+|-.|.++|-++.++|-+++++....
T Consensus 27 SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 27 SSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp --SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 678999999999999999999998764
No 88
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=55.73 E-value=1.1e+02 Score=28.75 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=31.6
Q ss_pred CCcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccC
Q 013383 292 KRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVD 330 (444)
Q Consensus 292 ~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~ 330 (444)
+.|+.++..+|.|+-..++-.+ ..++..|||+++...
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~ 68 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWA--LAGPSGRVIAIERDE 68 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHH--HhCCCceEEEEecCH
Confidence 5788999999999999888877 368999999998644
No 89
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=51.20 E-value=2.7e+02 Score=28.04 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=30.7
Q ss_pred hhHHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 131 ALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 131 ~~l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
.++..+.+++++.|+... ...+.....--.+...|++++.+-..
T Consensus 71 ~~i~~li~~~vdgIiv~~-~d~~al~~~l~~a~~~gIpVV~~d~~ 114 (336)
T PRK15408 71 QLINNFVNQGYNAIIVSA-VSPDGLCPALKRAMQRGVKVLTWDSD 114 (336)
T ss_pred HHHHHHHHcCCCEEEEec-CCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 566777889999988753 33344455556678889999887554
No 90
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=50.24 E-value=46 Score=25.85 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=27.2
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCC
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP 178 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~ 178 (444)
|+-.|| |..|.-+|.+.+.+|.+++++.+...+
T Consensus 2 vvViGg--G~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGG--GFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEESS--SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred EEEECc--CHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 344576 789999999999999999999887543
No 91
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=49.36 E-value=20 Score=34.02 Aligned_cols=41 Identities=20% Similarity=0.303 Sum_probs=32.2
Q ss_pred hcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCC
Q 013383 138 DHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP 178 (444)
Q Consensus 138 ~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~ 178 (444)
-..+++|..++|-+|.+-.+||.+|++.|+++.+++....|
T Consensus 39 WREATTifmtsGhGGC~P~GLAlAA~rrG~~vev~~~~~~p 79 (207)
T PF11814_consen 39 WREATTIFMTSGHGGCGPFGLALAAARRGFKVEVWVSTDGP 79 (207)
T ss_pred HHHhceecccCCCCCcChHHHHHHHHHcCCceEEEECCCCC
Confidence 34567887555566778899999999999999999986543
No 92
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=47.32 E-value=26 Score=31.32 Aligned_cols=28 Identities=32% Similarity=0.343 Sum_probs=24.9
Q ss_pred eCcccchHHHHHHHHHHHhCCeEEEEecCC
Q 013383 147 CGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (444)
Q Consensus 147 ~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~ 176 (444)
.|+ ||.|.|+|...+..|.+++++.+..
T Consensus 5 iGa--G~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 5 IGA--GNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp ESS--SHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred ECc--CHHHHHHHHHHHHcCCEEEEEeccH
Confidence 565 8999999999999999999998863
No 93
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=47.30 E-value=53 Score=30.51 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=33.8
Q ss_pred HHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCC
Q 013383 133 LPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP 178 (444)
Q Consensus 133 l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~ 178 (444)
...+++.|+++|+-+|-.+-+.-.++|..|..+|++++++......
T Consensus 130 ~~~L~~~~i~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~ 175 (196)
T cd01011 130 AEYLRERGIDRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRA 175 (196)
T ss_pred HHHHHHCCCCEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCC
Confidence 3445678999999888544444457788888899999998876543
No 94
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=45.97 E-value=38 Score=36.61 Aligned_cols=93 Identities=26% Similarity=0.353 Sum_probs=58.7
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAV 158 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~al 158 (444)
|.|||.- +.+ .+.+| -||+| |.-.| |.|-|- .+.+++|.++|.++| -|+..|
T Consensus 426 GGTPL~V---~~~-~~~~G----------VI~Lk--DivK~---Gi~ERf-----~elR~MgIkTvM~TG---DN~~TA- 477 (681)
T COG2216 426 GGTPLVV---VEN-GRILG----------VIYLK--DIVKP---GIKERF-----AELRKMGIKTVMITG---DNPLTA- 477 (681)
T ss_pred CCCceEE---EEC-CEEEE----------EEEeh--hhcch---hHHHHH-----HHHHhcCCeEEEEeC---CCHHHH-
Confidence 7888877 544 22222 47777 45445 788886 467999999999877 476555
Q ss_pred HHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcc
Q 013383 159 AVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTH 201 (444)
Q Consensus 159 A~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~ 201 (444)
|+.|++.|+.-.+ -+..|+.+..-....+.-|. |-.++.++
T Consensus 478 a~IA~EAGVDdfi--AeatPEdK~~~I~~eQ~~grlVAMtGDGT 519 (681)
T COG2216 478 AAIAAEAGVDDFI--AEATPEDKLALIRQEQAEGRLVAMTGDGT 519 (681)
T ss_pred HHHHHHhCchhhh--hcCChHHHHHHHHHHHhcCcEEEEcCCCC
Confidence 6778899987644 34556544322223345566 66666554
No 95
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=45.34 E-value=1.9e+02 Score=28.58 Aligned_cols=36 Identities=33% Similarity=0.363 Sum_probs=28.4
Q ss_pred CCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 140 g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
+.+.||| |+ +|.=|.++|-..++.|...+++-+...
T Consensus 6 ~~~~lIT-GA-SsGIG~~~A~~lA~~g~~liLvaR~~~ 41 (265)
T COG0300 6 GKTALIT-GA-SSGIGAELAKQLARRGYNLILVARRED 41 (265)
T ss_pred CcEEEEE-CC-CchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence 3455666 65 457899999999999999999988643
No 96
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=43.24 E-value=89 Score=27.75 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=33.8
Q ss_pred HHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCC
Q 013383 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP 178 (444)
Q Consensus 136 a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~ 178 (444)
.++.|.++|+-+|-.+...-.++|.-|..+|++++++......
T Consensus 83 L~~~gi~~lii~G~~T~~CV~~Ta~~a~~~g~~v~v~~Da~as 125 (157)
T cd01012 83 LKATGRKQVVLAGLETHVCVLQTALDLLEEGYEVFVVADACGS 125 (157)
T ss_pred HHhcCCCEEEEEEeeccHHHHHHHHHHHHCCCEEEEEeeCCCC
Confidence 4578999999888665556678888899999999999886543
No 97
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=40.72 E-value=1.1e+02 Score=28.68 Aligned_cols=42 Identities=17% Similarity=0.292 Sum_probs=33.5
Q ss_pred HHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 136 a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
+++.|+++||-+|-.+-..-.++|.-|..+|++++|+-+...
T Consensus 137 L~~~gi~~lii~G~~T~~CV~~Ta~dA~~~gy~v~v~~Da~a 178 (212)
T PRK11609 137 LREHGITELIVMGLATDYCVKFTVLDALALGYQVNVITDGCR 178 (212)
T ss_pred HHHcCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEEeeccC
Confidence 467899999988855545566889999999999999987654
No 98
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=40.65 E-value=3.7e+02 Score=26.56 Aligned_cols=33 Identities=9% Similarity=-0.037 Sum_probs=23.0
Q ss_pred CcCEEEEeCCChhhHHHHHHHHHhcCC-CCeEEEE
Q 013383 293 RAIKFVVDAGTGTTAVGLGLGAICLGL-PWEVTAI 326 (444)
Q Consensus 293 ~~d~vvv~vGtGgt~aGl~~~~~~~g~-~~~vigV 326 (444)
.||.|++. +.|+..+.+.+.++..|. .+++++.
T Consensus 187 ~pd~v~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~ 220 (334)
T cd06356 187 KPDFVMSI-LVGANHLSFYRQWAAAGLGNIPMASS 220 (334)
T ss_pred CCCEEEEe-ccCCcHHHHHHHHHHcCCccCceeee
Confidence 68988874 445556678888888887 6666653
No 99
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=38.62 E-value=1e+02 Score=31.76 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=36.7
Q ss_pred HHHHHHHHH---HHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCCh
Q 013383 272 ALLGVFRLL---QYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTI 332 (444)
Q Consensus 272 ~~~G~~t~~---~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~ 332 (444)
..+.|.+.+ .-|.+... +--|.||+.||.|+.+..++.+.. | .-+|++||+..-.
T Consensus 155 MmQDYVRTgTY~~Ail~N~s---DF~~kiVlDVGaGSGILS~FAaqA--G-A~~vYAvEAS~MA 212 (517)
T KOG1500|consen 155 MMQDYVRTGTYQRAILENHS---DFQDKIVLDVGAGSGILSFFAAQA--G-AKKVYAVEASEMA 212 (517)
T ss_pred HHHHHHhhhHHHHHHHhccc---ccCCcEEEEecCCccHHHHHHHHh--C-cceEEEEehhHHH
Confidence 456666665 33444431 235899999999998777776553 3 4689999986643
No 100
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=37.69 E-value=71 Score=30.40 Aligned_cols=44 Identities=11% Similarity=0.051 Sum_probs=35.4
Q ss_pred HHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 134 PLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 134 ~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
..+++.|+++||-+|-++-....++|.-|..+|++++++-....
T Consensus 144 ~~Lr~~gI~~lvi~Gv~T~~CV~sTar~A~~~Gy~v~vv~Da~a 187 (226)
T TIGR03614 144 SMLRARGIRNLVFTGIATNVCVESTLRDGFHLEYFGVVLEDATH 187 (226)
T ss_pred HHHHHCCCCEEEEeccCccHhHHHHHHHHHHCCCEEEEechhcc
Confidence 33467999999988866655667889999999999999987644
No 101
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=37.24 E-value=74 Score=28.20 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=35.6
Q ss_pred HHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 134 PLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 134 ~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
...++.|.++|+-+|-++...-.++|.-|..+|++++++.....
T Consensus 92 ~~L~~~gi~~viv~G~~td~CV~~Ta~~a~~~g~~v~vi~Da~~ 135 (155)
T cd01014 92 EWLREAGIDHLVICGAMTEMCVDTTVRSAFDLGYDVTVVADACA 135 (155)
T ss_pred HHHHHCCCCEEEEEeeccchhHHHHHHHHHHCCCcEEEeccccc
Confidence 33467899999988877767788999999999999999876543
No 102
>PRK08813 threonine dehydratase; Provisional
Probab=37.02 E-value=4.8e+02 Score=26.79 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=24.1
Q ss_pred EEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCCh
Q 013383 298 VVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTI 332 (444)
Q Consensus 298 vv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~ 332 (444)
|+++.+|.+..+++.+.+.+|.+. +-|.+...+
T Consensus 84 VV~aSsGN~G~alA~aa~~~Gi~~--~IvvP~~~~ 116 (349)
T PRK08813 84 VICASAGNHAQGVAWSAYRLGVQA--ITVMPHGAP 116 (349)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCE--EEEEcCCCC
Confidence 667789999999998888887554 445565544
No 103
>PRK12743 oxidoreductase; Provisional
Probab=36.19 E-value=2.7e+02 Score=26.22 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=24.0
Q ss_pred CeEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 142 ~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
+.+|| |+ +|.-|.++|...+..|.+++++.+.
T Consensus 4 ~vlIt-Ga-s~giG~~~a~~l~~~G~~V~~~~~~ 35 (256)
T PRK12743 4 VAIVT-AS-DSGIGKACALLLAQQGFDIGITWHS 35 (256)
T ss_pred EEEEE-CC-CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 44555 64 4679999999999999988776543
No 104
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=35.28 E-value=1.2e+02 Score=30.44 Aligned_cols=48 Identities=27% Similarity=0.313 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccC
Q 013383 276 VFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVD 330 (444)
Q Consensus 276 ~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~ 330 (444)
+.++..|..++. ..+..-|+.+|+|+-+.+++... +|.. +|+||...+
T Consensus 147 TT~lcl~~l~~~----~~~g~~vLDvG~GSGILaiaA~k--lGA~-~v~a~DiDp 194 (295)
T PF06325_consen 147 TTRLCLELLEKY----VKPGKRVLDVGCGSGILAIAAAK--LGAK-KVVAIDIDP 194 (295)
T ss_dssp HHHHHHHHHHHH----SSTTSEEEEES-TTSHHHHHHHH--TTBS-EEEEEESSC
T ss_pred HHHHHHHHHHHh----ccCCCEEEEeCCcHHHHHHHHHH--cCCC-eEEEecCCH
Confidence 455678888775 24456889999999999887654 5653 799998754
No 105
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=34.88 E-value=1.2e+02 Score=28.52 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=31.9
Q ss_pred HHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCC
Q 013383 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP 178 (444)
Q Consensus 136 a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~ 178 (444)
+++.|+++|+-+|-.+...-.++|.-+..+|++++|+......
T Consensus 141 L~~~gi~~lvi~G~~t~~CV~~Ta~~a~~~g~~v~vv~Da~~~ 183 (212)
T PTZ00331 141 LKAHGVRRVFICGLAFDFCVLFTALDAVKLGFKVVVLEDATRA 183 (212)
T ss_pred HHHCCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEeCcCccC
Confidence 4568999999888544334457788888999999998876443
No 106
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=34.62 E-value=88 Score=28.39 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=32.6
Q ss_pred HHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 136 a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
.++.|+++||-+|-++-....++|..|..+|++++++.....
T Consensus 109 L~~~gi~~vvi~G~~t~~CV~~Ta~~A~~~Gy~v~vv~Da~a 150 (179)
T cd01015 109 LTARGVDTLIVAGCSTSGCIRATAVDAMQHGFRPIVVRECVG 150 (179)
T ss_pred HHHcCCCEEEEeeecccHhHHHHHHHHHHCCCeEEEeecccc
Confidence 467899999988755433445889999999999999877644
No 107
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=32.25 E-value=74 Score=34.18 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=31.7
Q ss_pred cCCCeEEEeCc--------------ccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 139 HIVTDLVTCGG--------------CQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 139 ~g~~~Vvt~G~--------------s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
.|.+-+||.|+ |+|-.|.++|.+++.+|-+++++...
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp 305 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGP 305 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCC
Confidence 56677888776 67899999999999999999999854
No 108
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=31.99 E-value=85 Score=27.90 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=32.5
Q ss_pred HHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCC
Q 013383 135 LLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (444)
Q Consensus 135 ~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~ 176 (444)
.+++.|.++|+-+|-.+...-.++|..|..+|++++++....
T Consensus 106 ~L~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v~v~~Da~ 147 (174)
T PF00857_consen 106 ILRKRGIDTVILCGVATDVCVLATARDAFDRGYRVIVVEDAC 147 (174)
T ss_dssp HHHHTTESEEEEEEESTTTHHHHHHHHHHHTT-EEEEEEEEE
T ss_pred cccccccceEEEcccccCcEEehhHHHHHHCCCEEEEEChhh
Confidence 346789999998886665566788999999999999987753
No 109
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=31.45 E-value=1.4e+02 Score=28.84 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=32.4
Q ss_pred HHHhhHHHHHhcCCC----eEEEeCcc--cchHHHHHHHHHHHhCCe---EEEEecCCC
Q 013383 128 KMDALLPLLEDHIVT----DLVTCGGC--QSAHATAVAVSCAERGLK---SHLLLRGEQ 177 (444)
Q Consensus 128 kl~~~l~~a~~~g~~----~Vvt~G~s--~GNhg~alA~aaa~~Gl~---~~i~~~~~~ 177 (444)
.+..++..++..|.+ ++++-||. .-+|..+++-.|+..|++ .|+++.+-+
T Consensus 15 ~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRD 73 (223)
T PF06415_consen 15 VLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRD 73 (223)
T ss_dssp HHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSS
T ss_pred HHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCC
Confidence 455666776665532 45566774 446999999999999988 678887643
No 110
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=31.35 E-value=81 Score=24.02 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=20.5
Q ss_pred chHHHHHHHHHHHhCCeEEEEecC
Q 013383 152 SAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 152 GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
|=.|.+.|+..++.|++++|+=..
T Consensus 5 G~sGl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 5 GISGLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CHHHHHHHHHHHHCCCcEEEEecC
Confidence 568999999999999999888544
No 111
>PRK11440 putative hydrolase; Provisional
Probab=31.17 E-value=1.1e+02 Score=28.07 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=33.9
Q ss_pred HHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 136 a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
.++.|+++||-+|-.+-..-.++|.-|..+|++++++.....
T Consensus 116 L~~~gi~~lii~Gv~T~~CV~~Ta~~A~~~gy~v~vv~Da~a 157 (188)
T PRK11440 116 LRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACS 157 (188)
T ss_pred HHHCCCCEEEEeeechhHHHHHHHHHHHHCCCEEEEechhhc
Confidence 357899999988866655677899999999999999877543
No 112
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=30.89 E-value=1.7e+02 Score=25.52 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=32.7
Q ss_pred HHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 136 a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
.++.|.++|+-+|-.+...-.++|.-+..+|++++|+.....
T Consensus 105 L~~~~i~~vil~G~~t~~CV~~T~~~a~~~G~~v~vi~Da~~ 146 (161)
T cd00431 105 LRERGIDTLVVCGIATDICVLATARDALDLGYRVIVVEDACA 146 (161)
T ss_pred HHHCCCCEEEEEecCcChhHHHHHHHHHHCCCEEEEehhhcc
Confidence 466788999988866655666788888889999999877543
No 113
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=29.71 E-value=6.2e+02 Score=25.83 Aligned_cols=32 Identities=9% Similarity=-0.050 Sum_probs=23.1
Q ss_pred CcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEE
Q 013383 293 RAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTA 325 (444)
Q Consensus 293 ~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vig 325 (444)
.||.|++.. .|+-.+.+.+.+++.|.++++++
T Consensus 188 ~pD~V~~~~-~g~~~~~~~kq~~~~G~~~~~~~ 219 (374)
T TIGR03669 188 DPDFVMSML-VGANHASFYEQAASANLNLPMGT 219 (374)
T ss_pred CCCEEEEcC-cCCcHHHHHHHHHHcCCCCcccc
Confidence 689998754 44455677888888888777754
No 114
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=29.15 E-value=95 Score=30.01 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=31.9
Q ss_pred ecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh
Q 013383 380 NVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE 418 (444)
Q Consensus 380 v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~ 418 (444)
|+++|+.+++..+++..+-.+||- ||++.-...+.+.+
T Consensus 151 vS~ee~~~ti~k~yes~~YiLdPH-TAVav~~~~r~idk 188 (266)
T KOG2616|consen 151 VSNEETTQTIKKIYESNHYILDPH-TAVAVNYHYRQIDK 188 (266)
T ss_pred cCcHHHHHHHHHHhccCCeeecCc-hHHHHHHHHHHHhc
Confidence 788999999999999999999997 78877666665543
No 115
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=28.92 E-value=68 Score=33.62 Aligned_cols=31 Identities=32% Similarity=0.526 Sum_probs=22.1
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEecCC
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~ 176 (444)
||-+|| |=.|.+.|.+|++.|.++.++=+..
T Consensus 2 VVVvGg--G~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 2 VVVVGG--GPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEE----SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEEECc--cHHHHHHHHHHHHCCCEEEEEECCc
Confidence 455576 5699999999999999999886554
No 116
>PLN02743 nicotinamidase
Probab=27.87 E-value=98 Score=30.02 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=33.8
Q ss_pred HHHhcCCCeEEEeCcccchHHH----HHHHHHHHhCC-----eEEEEecCCC
Q 013383 135 LLEDHIVTDLVTCGGCQSAHAT----AVAVSCAERGL-----KSHLLLRGEQ 177 (444)
Q Consensus 135 ~a~~~g~~~Vvt~G~s~GNhg~----alA~aaa~~Gl-----~~~i~~~~~~ 177 (444)
..++.|+++||-+| ...|.|+ ++|..|..+|+ +++++-....
T Consensus 145 ~Lr~~gI~~liv~G-v~T~~CV~~~~sTardA~~~Gy~~~~~~V~Vv~DA~a 195 (239)
T PLN02743 145 WVNNNKIKVILVVG-ICTDICVLDFVASALSARNHGILPPLEDVVVYSRGCA 195 (239)
T ss_pred HHHHCCCCEEEEEE-eCcchhccChHHHHHHHHHcCCCCCCceEEEeCCccc
Confidence 34678999999877 6679999 89999999999 6777766543
No 117
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=27.76 E-value=1.7e+02 Score=27.26 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=33.6
Q ss_pred HHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCC
Q 013383 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP 178 (444)
Q Consensus 136 a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~ 178 (444)
+++.|+++||-+|-.+-..-.++|.-|..+|++++++-.....
T Consensus 137 Lr~~gi~~lii~Gv~T~~CV~~Ta~~A~~~Gy~v~vv~Da~as 179 (203)
T cd01013 137 LKESGRDQLIITGVYAHIGCLSTAVDAFMRDIQPFVVADAIAD 179 (203)
T ss_pred HHHcCCCEEEEEEeccChhHHHHHHHHHHCCCeEEEeccccCC
Confidence 4678999999888655556668888999999999888776543
No 118
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=27.44 E-value=72 Score=32.86 Aligned_cols=30 Identities=37% Similarity=0.523 Sum_probs=22.9
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
||-.|+ |.+|.+.|..|++.|.+++++=..
T Consensus 2 VvVIG~--G~AGl~AA~~Aae~G~~V~lvek~ 31 (417)
T PF00890_consen 2 VVVIGG--GLAGLAAAIEAAEAGAKVLLVEKG 31 (417)
T ss_dssp EEEE-S--SHHHHHHHHHHHHTTT-EEEEESS
T ss_pred EEEECC--CHHHHHHHHHHhhhcCeEEEEEee
Confidence 444565 789999999999999988888654
No 119
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=26.35 E-value=1.1e+02 Score=28.18 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=22.5
Q ss_pred eCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 147 CGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 147 ~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
.|+ |..|.++|+.++..|++++++-+.
T Consensus 5 iGa--G~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 5 IGA--GTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp ES---SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EcC--CHHHHHHHHHHHhCCCcEEEEECC
Confidence 465 789999999999999999999764
No 120
>PRK12483 threonine dehydratase; Reviewed
Probab=25.98 E-value=6.3e+02 Score=27.52 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=24.7
Q ss_pred EEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCCh
Q 013383 298 VVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTI 332 (444)
Q Consensus 298 vv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~ 332 (444)
|+++++|.+..|++.+.+.+|. +.+-|++...+
T Consensus 88 VV~aSaGNha~gvA~aA~~lGi--~~~IvmP~~tp 120 (521)
T PRK12483 88 VITASAGNHAQGVALAAARLGV--KAVIVMPRTTP 120 (521)
T ss_pred EEEECCCHHHHHHHHHHHHhCC--CEEEEECCCCC
Confidence 5566789999999999888774 55666776654
No 121
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=25.95 E-value=3.1e+02 Score=28.47 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEE
Q 013383 270 AVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAI 326 (444)
Q Consensus 270 p~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV 326 (444)
|.+...+..++.+|.+. +||.||--+ .|.+...+++.++..|.+.+-+.|
T Consensus 172 plg~td~~~ii~~I~~~------~Pd~V~stl-vG~s~~aF~r~~~~aG~~~~~~Pi 221 (363)
T PF13433_consen 172 PLGATDFDPIIAEIKAA------KPDFVFSTL-VGDSNVAFYRAYAAAGLDPERIPI 221 (363)
T ss_dssp -S-HHHHHHHHHHHHHH------T-SEEEEE---TTCHHHHHHHHHHHH-SSS---E
T ss_pred cCCchhHHHHHHHHHhh------CCCEEEEeC-cCCcHHHHHHHHHHcCCCcccCeE
Confidence 33446677788888876 688655555 556666788899887765543333
No 122
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=25.88 E-value=6.5e+02 Score=25.97 Aligned_cols=35 Identities=29% Similarity=0.279 Sum_probs=27.0
Q ss_pred EEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCChh
Q 013383 297 FVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTID 333 (444)
Q Consensus 297 vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~~ 333 (444)
=|+|+.+|..+-|++.+.+.+|.+. +-|+|...+.
T Consensus 76 gViaaSaGNHaQGvA~aa~~lGi~a--~IvMP~~tp~ 110 (347)
T COG1171 76 GVIAASAGNHAQGVAYAAKRLGIKA--TIVMPETTPK 110 (347)
T ss_pred ceEEecCCcHHHHHHHHHHHhCCCE--EEEecCCCcH
Confidence 3777778999999999999888554 4467877664
No 123
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=25.83 E-value=3.3e+02 Score=26.48 Aligned_cols=90 Identities=17% Similarity=0.125 Sum_probs=49.5
Q ss_pred CcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCChhHH-H
Q 013383 258 KKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGY-K 336 (444)
Q Consensus 258 ~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~~~~-~ 336 (444)
++.+++|....+..........+-+..++. . .++. ++.+|.|.|+.-+...+.. .....+.-|+..|..... .
T Consensus 20 k~~~Vv~~~~~~~~~~~~l~~~aA~~L~~~-l---~~~~-~iGv~wG~Tl~~~~~~l~~-~~~~~~~vV~l~Gg~~~~~~ 93 (255)
T PF04198_consen 20 KEVIVVPSPSDDEDILESLGEAAAEYLSEL-L---KDGD-VIGVGWGRTLYAVANHLPP-KSLPNVTVVPLIGGVGNSNS 93 (255)
T ss_dssp SEEEEESSSTTTHHHHHHHHHHHHHHHHHH------TTE-EEEE-TSHHHHHHHHTS---SSSSCEEEEESBSBTTTSSG
T ss_pred CEEEEecCCCChHHHHHHHHHHHHHHHHHh-C---CCCC-EEEEcchHHHHHHHHhcCc-cCCCCcEEEECCCCCCCCCC
Confidence 467889887654322222222333333332 1 2233 8899999999988887764 445667778887754321 1
Q ss_pred HHHHHHHHHHHHHhccc
Q 013383 337 QQEKNLISEFKRLFGFL 353 (444)
Q Consensus 337 ~~~~~l~~~~~~~i~~~ 353 (444)
.....++..+++.++..
T Consensus 94 ~~~~~i~~~lA~~~g~~ 110 (255)
T PF04198_consen 94 YQANEIARRLAEKLGGK 110 (255)
T ss_dssp GSHHHHHHHHHHHHTSE
T ss_pred cCHHHHHHHHHHHhCCc
Confidence 12234566677766654
No 124
>PRK06847 hypothetical protein; Provisional
Probab=25.56 E-value=89 Score=31.51 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=24.7
Q ss_pred eEEEeCcccchHHHHHHHHHHHhCCeEEEEec
Q 013383 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (444)
Q Consensus 143 ~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~ 174 (444)
.|+-.|| |-.|.++|..+++.|++++||=.
T Consensus 6 ~V~IVGa--G~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 6 KVLIVGG--GIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred eEEEECC--CHHHHHHHHHHHhCCCCEEEEec
Confidence 4555676 67999999999999999988844
No 125
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=25.03 E-value=96 Score=32.48 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=21.9
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEe
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~ 173 (444)
||..|| |-+|...|++++++|.++.++.
T Consensus 2 ViVVGg--G~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 2 VIVVGG--GHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp EEEESS--SHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEEe
Confidence 455576 6699999999999999999994
No 126
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=24.69 E-value=1.1e+02 Score=27.49 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=27.4
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEecCC
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~ 176 (444)
|.-.|-..+|.+.|++..++++|+.++++.|..
T Consensus 5 i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 5 IAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred EEEECCCCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 444565458999999999999999988888876
No 127
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=24.42 E-value=1.2e+02 Score=31.43 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=26.4
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
|--.||.| .|+.+|.+|+++|++++++-|...
T Consensus 4 vgIlGGGQ--LgrMm~~aa~~lG~~v~vLdp~~~ 35 (375)
T COG0026 4 VGILGGGQ--LGRMMALAAARLGIKVIVLDPDAD 35 (375)
T ss_pred EEEEcCcH--HHHHHHHHHHhcCCEEEEecCCCC
Confidence 33358766 999999999999999999987643
No 128
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=23.78 E-value=1.2e+02 Score=31.80 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=29.0
Q ss_pred CCCeEEEeCc--------------ccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 140 IVTDLVTCGG--------------CQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 140 g~~~Vvt~G~--------------s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
|.+-+||.|+ |+|-.|.++|..+..+|.+++++...
T Consensus 185 ~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~ 234 (390)
T TIGR00521 185 GKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGP 234 (390)
T ss_pred CceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 4566777554 56789999999999999999988754
No 129
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=23.74 E-value=1.1e+02 Score=29.94 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=24.5
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
|+-.|| |=.|.++|.+.++.|++++||=....
T Consensus 4 V~IvGa--G~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 4 VAIVGA--GPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEE----SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred EEEECC--CHHHHHHHHHHHhcccccccchhccc
Confidence 454566 66999999999999999998876544
No 130
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=23.39 E-value=1.3e+02 Score=23.63 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=24.2
Q ss_pred HhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 137 EDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 137 ~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
...+...||+..|+.-.| .|..|+.+|+++++-++.
T Consensus 27 ~~~~~~Giv~~~Gg~~SH---~aIlAr~~giP~ivg~~~ 62 (80)
T PF00391_consen 27 DLQRVAGIVTEEGGPTSH---AAILARELGIPAIVGVGD 62 (80)
T ss_dssp HHTTSSEEEESSSSTTSH---HHHHHHHTT-EEEESTTT
T ss_pred chhheEEEEEEcCCccch---HHHHHHHcCCCEEEeecc
Confidence 345677899843333344 478899999999987753
No 131
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=23.25 E-value=94 Score=33.44 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=24.6
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
||-.|| |-.|.++|..+++.|+++.++=..
T Consensus 9 VvIIGG--Gi~G~~~A~~la~rGl~V~LvEk~ 38 (508)
T PRK12266 9 LLVIGG--GINGAGIARDAAGRGLSVLLCEQD 38 (508)
T ss_pred EEEECc--CHHHHHHHHHHHHCCCeEEEEecC
Confidence 555576 779999999999999998877554
No 132
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=22.90 E-value=1.5e+02 Score=29.54 Aligned_cols=51 Identities=22% Similarity=0.167 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhHH-cCCCCcCEEEEeCCChhhHHHHHHHHHhcCCCCeEE
Q 013383 274 LGVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVT 324 (444)
Q Consensus 274 ~G~~t~~~Ei~~q~~-~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vi 324 (444)
.|+..=..|+..+.. .+-..-+-+++.||+|-+++=++.++...|++++||
T Consensus 215 ~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g~~~~lY 266 (286)
T KOG1529|consen 215 DGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISASIIALALERSGPDAKLY 266 (286)
T ss_pred ccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcCCCccee
Confidence 445333678877663 222223559999999999999999998888888888
No 133
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=22.50 E-value=1.2e+02 Score=31.89 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=23.1
Q ss_pred ccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 150 CQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 150 s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
|+|-.|.++|.+++..|-+++++...
T Consensus 212 SSG~~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 212 SSGKMGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred CcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 57889999999999999999888754
No 134
>PRK06202 hypothetical protein; Provisional
Probab=22.49 E-value=96 Score=29.31 Aligned_cols=37 Identities=32% Similarity=0.246 Sum_probs=24.2
Q ss_pred CEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCC
Q 013383 295 IKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDT 331 (444)
Q Consensus 295 d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~ 331 (444)
..+=+++|+|....-++..++..|+..+|+||+....
T Consensus 63 ~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~ 99 (232)
T PRK06202 63 TLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR 99 (232)
T ss_pred EEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH
Confidence 3455666666655555554555577889999988653
No 135
>PRK09126 hypothetical protein; Provisional
Probab=22.41 E-value=1e+02 Score=31.38 Aligned_cols=31 Identities=32% Similarity=0.386 Sum_probs=24.7
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEecCC
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~ 176 (444)
|+-.|| |-.|.++|.+.++.|++++|+=...
T Consensus 6 viIvGg--G~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 6 IVVVGA--GPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred EEEECc--CHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 444565 6799999999999999998885543
No 136
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=22.27 E-value=93 Score=28.92 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=30.4
Q ss_pred EEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCChhHHH
Q 013383 297 FVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYK 336 (444)
Q Consensus 297 vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~~~~~ 336 (444)
-++++|||+-+=|+-.++. .|+.+++-|+.......|.
T Consensus 51 ~~lDiGSGaGfPGipLaI~--~p~~~~~LvEs~~KK~~FL 88 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIA--RPDLQVTLVESVGKKVAFL 88 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH---TTSEEEEEESSHHHHHHH
T ss_pred eEEecCCCCCChhHHHHHh--CCCCcEEEEeCCchHHHHH
Confidence 4999999999999999885 5889999999866544443
No 137
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=21.99 E-value=1.9e+02 Score=22.75 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=28.0
Q ss_pred HHHHHHHhCCccccc----------ccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCCc
Q 013383 389 CHRIAQLTGILVDPV----------YTLAAWEMATLLSDE-KLKQDADVVMLHTGGTL 435 (444)
Q Consensus 389 ~~~la~~eGI~vEP~----------ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~~ 435 (444)
.+.+++..||..|-. +++..+.++-.++++ .+.+|++|+++-.|.-.
T Consensus 24 ~~~~~~~lgi~~~~~~~~~~~~Gn~~sa~~~~~L~~~~~~g~~~~Gd~vl~~~~G~G~ 81 (90)
T PF08541_consen 24 LDSIAKRLGIPPERFPDNLAEYGNTGSASIPINLADALEEGRIKPGDRVLLVGFGAGF 81 (90)
T ss_dssp HHHHHHHHTS-GGGBE-THHHH-B-GGGHHHHHHHHHHHTTSSCTTEEEEEEEEETTT
T ss_pred HHHHHHHcCCcHHHHHHHHhccCcchhhhHHHHHHHHHHcCCCCCCCEEEEEEEEhhh
Confidence 334555566665543 234556666666554 57788999888777443
No 138
>PLN02621 nicotinamidase
Probab=21.84 E-value=2.8e+02 Score=25.60 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=32.5
Q ss_pred HHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCC
Q 013383 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP 178 (444)
Q Consensus 136 a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~ 178 (444)
.++.|.++||-+|-.+-..-.++|..|..+|++++++......
T Consensus 122 L~~~gi~~lvi~Gv~T~~CV~~Ta~~a~~~gy~v~v~~Da~as 164 (197)
T PLN02621 122 LRKIGVKEVIVTGVMTNLCCETTAREAFVRGFRVFFSTDATAT 164 (197)
T ss_pred HHHCCCCEEEEEecccchhHHHHHHHHHHCCCEEEEeccccCC
Confidence 4678999999877544345557788888999999998876543
No 139
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=21.68 E-value=1.3e+02 Score=30.84 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=27.1
Q ss_pred cCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCC
Q 013383 294 AIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDT 331 (444)
Q Consensus 294 ~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~ 331 (444)
-|.+|+.||.|+-+.-++.+- .| ..+|+||+...-
T Consensus 60 ~dK~VlDVGcGtGILS~F~ak--AG-A~~V~aVe~S~i 94 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAK--AG-ARKVYAVEASSI 94 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHH--hC-cceEEEEechHH
Confidence 488999999998777666554 35 789999997553
No 140
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=21.65 E-value=1.1e+02 Score=26.88 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=23.5
Q ss_pred EEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 145 VTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 145 vt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
+-+|+ |.-+.+++..++.+|++++++=|.
T Consensus 2 ~I~Ga--G~va~al~~la~~lg~~v~v~d~r 30 (136)
T PF13478_consen 2 VIFGA--GHVARALARLAALLGFRVTVVDPR 30 (136)
T ss_dssp EEES---STCHHHHHHHHHHCTEEEEEEES-
T ss_pred EEEeC--cHHHHHHHHHHHhCCCEEEEEcCC
Confidence 33565 678999999999999999999876
No 141
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=21.10 E-value=2.3e+02 Score=29.25 Aligned_cols=39 Identities=10% Similarity=0.015 Sum_probs=29.6
Q ss_pred HHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCC
Q 013383 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (444)
Q Consensus 136 a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~ 176 (444)
.++...+.||+.|+.+.|. .+|.+|+.+|++++++++.+
T Consensus 85 l~~~kPd~vi~~g~~~~~~--~~a~aa~~~gip~v~~i~P~ 123 (385)
T TIGR00215 85 AKQAKPDLLVGIDAPDFNL--TKELKKKDPGIKIIYYISPQ 123 (385)
T ss_pred HHhcCCCEEEEeCCCCccH--HHHHHHhhCCCCEEEEeCCc
Confidence 4566778899988766565 36678899999999987644
No 142
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=20.88 E-value=1.2e+02 Score=31.04 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=24.2
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEec
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~ 174 (444)
|+-.|| |-.|.++|.+.++.|++++||=.
T Consensus 6 v~IvGg--G~aGl~~A~~L~~~G~~v~l~E~ 34 (384)
T PRK08849 6 IAVVGG--GMVGAATALGFAKQGRSVAVIEG 34 (384)
T ss_pred EEEECc--CHHHHHHHHHHHhCCCcEEEEcC
Confidence 444565 78999999999999999998864
No 143
>PRK06753 hypothetical protein; Provisional
Probab=20.26 E-value=1.3e+02 Score=30.31 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=24.1
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
|+-.|| |=.|.++|...++.|++++|+=..
T Consensus 3 V~IvGg--G~aGl~~A~~L~~~g~~v~v~E~~ 32 (373)
T PRK06753 3 IAIIGA--GIGGLTAAALLQEQGHEVKVFEKN 32 (373)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCcEEEEecC
Confidence 444576 679999999999999999887543
No 144
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=20.22 E-value=1.2e+02 Score=33.81 Aligned_cols=31 Identities=39% Similarity=0.635 Sum_probs=24.5
Q ss_pred eEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 143 ~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
.||-.|| |-+|.++|+.+++.|+++.++=.+
T Consensus 73 DVvVIGG--Gi~Ga~~A~~lA~rGl~V~LvE~~ 103 (627)
T PLN02464 73 DVLVVGG--GATGAGVALDAATRGLRVGLVERE 103 (627)
T ss_pred CEEEECC--CHHHHHHHHHHHhCCCEEEEEecc
Confidence 3555576 779999999999999997776543
No 145
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=20.07 E-value=7.3e+02 Score=27.76 Aligned_cols=71 Identities=8% Similarity=-0.051 Sum_probs=50.8
Q ss_pred CCeEEEEeCCCCC-C----CCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCe--EEEEecCC
Q 013383 106 DRCFYVVRDDLLH-P----LVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLK--SHLLLRGE 176 (444)
Q Consensus 106 g~~l~vKrEdl~~-p----~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~--~~i~~~~~ 176 (444)
+..||+-.++.+. . .+|+=|.+-+..++.++.+.|..-|+.-.-..-.....+-..|++.|-+ ..+|-+..
T Consensus 165 ~~pv~l~~~~~~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD~~l~~~~~~~~~~~G~~dd~~~f~~~~ 242 (634)
T TIGR03743 165 EEDVYLPLGHRVGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVIDPKGDADLKRRMRAEAKRAGRPDRFYYFHPAF 242 (634)
T ss_pred CeeEEeecCCCCCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHHHHHHHHHHhCCCceEEEEecCC
Confidence 4578988887652 1 1688899999999999999987555553211112456778889999998 88777654
Done!