Query 013383
Match_columns 444
No_of_seqs 271 out of 1786
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 09:33:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9b_A D-cysteine desulfhydras 100.0 6.1E-55 2.1E-59 441.0 30.8 312 66-443 23-341 (342)
2 1f2d_A 1-aminocyclopropane-1-c 100.0 2E-54 6.9E-59 436.8 29.3 317 66-444 6-336 (341)
3 1j0a_A 1-aminocyclopropane-1-c 100.0 5.3E-53 1.8E-57 423.8 31.1 306 66-443 12-320 (325)
4 1tzj_A ACC deaminase, 1-aminoc 100.0 4.6E-52 1.6E-56 418.7 28.9 317 65-443 5-334 (338)
5 3l6b_A Serine racemase; pyrido 100.0 3.3E-47 1.1E-51 385.2 19.4 289 79-439 24-321 (346)
6 4h27_A L-serine dehydratase/L- 100.0 2.8E-46 9.5E-51 380.8 21.9 288 79-440 45-349 (364)
7 2gn0_A Threonine dehydratase c 100.0 1.2E-46 4.1E-51 380.3 17.3 291 79-441 39-334 (342)
8 1ve5_A Threonine deaminase; ri 100.0 3.4E-46 1.1E-50 371.9 18.9 286 79-437 19-309 (311)
9 1v71_A Serine racemase, hypoth 100.0 2.2E-46 7.4E-51 375.4 15.1 291 79-442 25-319 (323)
10 3aey_A Threonine synthase; PLP 100.0 1E-45 3.6E-50 374.6 18.9 292 66-435 19-321 (351)
11 2d1f_A Threonine synthase; ami 100.0 1.1E-45 3.6E-50 375.9 18.0 293 66-435 29-330 (360)
12 1p5j_A L-serine dehydratase; l 100.0 2.4E-45 8.3E-50 374.8 20.6 290 79-438 45-347 (372)
13 2rkb_A Serine dehydratase-like 100.0 3.4E-45 1.2E-49 365.9 20.4 286 79-438 6-307 (318)
14 4aec_A Cysteine synthase, mito 100.0 2.7E-44 9.4E-49 371.8 26.4 278 78-433 121-406 (430)
15 2zsj_A Threonine synthase; PLP 100.0 2.2E-45 7.4E-50 372.4 17.4 292 66-435 21-323 (352)
16 2egu_A Cysteine synthase; O-ac 100.0 2.6E-44 8.9E-49 358.0 24.7 276 79-434 13-295 (308)
17 3dwg_A Cysteine synthase B; su 100.0 1.3E-44 4.5E-49 363.1 21.3 277 79-434 14-299 (325)
18 2v03_A Cysteine synthase B; py 100.0 6E-44 2.1E-48 354.8 25.0 271 79-437 9-286 (303)
19 4d9i_A Diaminopropionate ammon 100.0 2.6E-44 8.9E-49 370.3 23.1 299 79-441 43-386 (398)
20 1y7l_A O-acetylserine sulfhydr 100.0 1.2E-43 4E-48 354.4 26.5 282 79-435 12-303 (316)
21 3tbh_A O-acetyl serine sulfhyd 100.0 1.8E-43 6.2E-48 356.1 27.9 276 79-433 20-303 (334)
22 1ve1_A O-acetylserine sulfhydr 100.0 3.7E-43 1.3E-47 349.0 27.0 277 79-435 8-293 (304)
23 2pqm_A Cysteine synthase; OASS 100.0 2.9E-43 9.9E-48 355.8 26.3 286 67-435 15-311 (343)
24 2q3b_A Cysteine synthase A; py 100.0 1E-42 3.5E-47 347.2 28.1 278 79-434 15-299 (313)
25 1z7w_A Cysteine synthase; tran 100.0 1E-42 3.6E-47 348.5 27.8 279 79-435 14-300 (322)
26 3iau_A Threonine deaminase; py 100.0 4.3E-44 1.5E-48 364.9 17.5 292 79-441 59-354 (366)
27 3ss7_X D-serine dehydratase; t 100.0 3.7E-43 1.3E-47 366.1 21.6 298 79-437 77-430 (442)
28 3vc3_A Beta-cyanoalnine syntha 100.0 7.1E-42 2.4E-46 345.8 26.6 278 79-433 34-318 (344)
29 1o58_A O-acetylserine sulfhydr 100.0 6.4E-42 2.2E-46 340.2 25.3 274 78-435 18-297 (303)
30 1x1q_A Tryptophan synthase bet 100.0 8.3E-43 2.8E-47 361.3 19.1 335 40-441 34-411 (418)
31 1tdj_A Biosynthetic threonine 100.0 1.8E-42 6E-47 365.0 21.2 288 79-438 30-322 (514)
32 2o2e_A Tryptophan synthase bet 100.0 9.5E-42 3.3E-46 353.6 20.2 338 41-440 39-412 (422)
33 1jbq_A B, cystathionine beta-s 100.0 5E-41 1.7E-45 348.7 24.9 286 78-434 106-400 (435)
34 1v8z_A Tryptophan synthase bet 100.0 7.3E-42 2.5E-46 350.5 16.8 336 42-440 9-381 (388)
35 1wkv_A Cysteine synthase; homo 100.0 6.3E-41 2.2E-45 343.6 21.4 302 45-437 61-375 (389)
36 1qop_B Tryptophan synthase bet 100.0 1E-41 3.6E-46 350.6 15.5 335 41-440 13-386 (396)
37 3pc3_A CG1753, isoform A; CBS, 100.0 1.8E-40 6.2E-45 353.1 24.5 285 79-434 59-352 (527)
38 1e5x_A Threonine synthase; thr 100.0 1.9E-38 6.5E-43 334.1 25.8 289 78-438 128-439 (486)
39 1vb3_A Threonine synthase; PLP 100.0 1.9E-33 6.3E-38 291.9 13.5 284 78-435 81-380 (428)
40 1kl7_A Threonine synthase; thr 99.9 5E-27 1.7E-31 247.9 17.4 287 79-434 95-452 (514)
41 4f4f_A Threonine synthase; str 99.9 4.1E-26 1.4E-30 238.3 21.9 270 108-435 102-418 (468)
42 3v7n_A Threonine synthase; ssg 99.9 1.2E-24 4.2E-29 227.5 20.9 272 108-432 115-434 (487)
43 2gk4_A Conserved hypothetical 61.4 9.9 0.00034 35.4 5.3 38 139-176 2-53 (232)
44 1p9o_A Phosphopantothenoylcyst 60.8 21 0.0007 34.8 7.6 41 137-177 33-90 (313)
45 3v8e_A Nicotinamidase; hydrola 58.2 21 0.00071 32.5 6.8 42 134-175 147-188 (216)
46 3gbc_A Pyrazinamidase/nicotina 57.2 23 0.00079 31.3 6.8 61 133-193 117-180 (186)
47 2wt9_A Nicotinamidase; hydrola 53.1 23 0.00078 32.6 6.3 42 135-176 161-202 (235)
48 3eef_A N-carbamoylsarcosine am 51.5 37 0.0013 29.7 7.2 62 134-196 103-167 (182)
49 1u7z_A Coenzyme A biosynthesis 49.6 21 0.00071 33.1 5.3 37 139-175 7-57 (226)
50 1im5_A 180AA long hypothetical 49.4 37 0.0013 29.5 6.8 68 107-177 89-156 (180)
51 3hu5_A Isochorismatase family 47.9 33 0.0011 30.7 6.4 44 134-177 119-162 (204)
52 3o94_A Nicotinamidase; hydrola 47.8 39 0.0013 30.6 6.9 60 135-194 137-200 (211)
53 3r2j_A Alpha/beta-hydrolase-li 47.2 50 0.0017 30.2 7.6 42 135-176 151-192 (227)
54 3ipc_A ABC transporter, substr 46.7 1.8E+02 0.0063 27.0 14.3 35 293-328 193-227 (356)
55 3gdg_A Probable NADP-dependent 45.7 59 0.002 29.5 8.0 37 139-176 19-56 (267)
56 3gbv_A Putative LACI-family tr 44.0 1.8E+02 0.0062 26.2 12.5 43 279-328 190-233 (304)
57 3g1w_A Sugar ABC transporter; 41.8 2E+02 0.0069 26.1 14.8 35 292-328 186-222 (305)
58 3kkj_A Amine oxidase, flavin-c 41.8 23 0.0008 30.6 4.3 27 144-172 5-31 (336)
59 3e03_A Short chain dehydrogena 38.2 1.7E+02 0.0057 26.8 9.9 35 140-176 6-40 (274)
60 1j2r_A Hypothetical isochorism 38.2 46 0.0016 29.4 5.7 43 135-177 126-168 (199)
61 1nf9_A Phenazine biosynthesis 36.5 50 0.0017 29.4 5.7 42 136-177 137-178 (207)
62 3l9w_A Glutathione-regulated p 35.9 2.7E+02 0.0091 27.6 11.5 49 143-199 6-55 (413)
63 3irv_A Cysteine hydrolase; str 35.4 52 0.0018 30.1 5.7 43 134-176 132-174 (233)
64 1yac_A Ycacgp, YCAC gene produ 35.1 58 0.002 29.2 5.9 60 134-193 98-160 (208)
65 3hut_A Putative branched-chain 35.1 2.8E+02 0.0095 25.7 15.3 35 293-328 194-228 (358)
66 3hb7_A Isochorismatase hydrola 34.4 57 0.002 29.1 5.7 44 134-177 113-156 (204)
67 3uve_A Carveol dehydrogenase ( 34.3 2.7E+02 0.0092 25.3 10.8 34 140-175 11-44 (286)
68 3lqy_A Putative isochorismatas 34.2 56 0.0019 28.7 5.5 44 134-177 106-149 (190)
69 3tg2_A Vibriobactin-specific i 34.1 53 0.0018 30.0 5.5 44 134-177 131-174 (223)
70 4ggo_A Trans-2-enoyl-COA reduc 33.7 3.7E+02 0.013 26.8 12.1 42 256-304 110-151 (401)
71 3fwz_A Inner membrane protein 32.8 2E+02 0.0067 23.3 11.6 31 143-175 9-39 (140)
72 3kvo_A Hydroxysteroid dehydrog 32.6 2E+02 0.0068 27.6 9.8 36 140-177 45-80 (346)
73 3oqp_A Putative isochorismatas 32.4 61 0.0021 29.2 5.6 43 134-176 102-144 (211)
74 3sc4_A Short chain dehydrogena 32.1 2E+02 0.0069 26.4 9.4 35 140-176 9-43 (285)
75 2fq1_A Isochorismatase; ENTB, 31.0 64 0.0022 30.4 5.7 43 135-177 139-181 (287)
76 3txy_A Isochorismatase family 30.8 74 0.0025 28.2 5.8 43 135-177 120-162 (199)
77 3ot4_A Putative isochorismatas 30.5 75 0.0026 29.2 5.9 43 135-177 153-195 (236)
78 3mcw_A Putative hydrolase; iso 30.4 66 0.0023 28.5 5.4 42 136-177 108-149 (198)
79 3td9_A Branched chain amino ac 30.3 3.4E+02 0.012 25.2 14.2 35 293-328 204-238 (366)
80 1vp8_A Hypothetical protein AF 29.3 1.8E+02 0.0061 26.3 7.8 49 122-173 25-73 (201)
81 3l6u_A ABC-type sugar transpor 29.3 1.1E+02 0.0036 27.8 6.8 35 292-328 194-229 (293)
82 1nba_A N-carbamoylsarcosine am 28.7 75 0.0026 29.7 5.7 41 135-176 158-199 (264)
83 4h17_A Hydrolase, isochorismat 28.7 72 0.0025 28.3 5.3 43 135-177 117-159 (197)
84 2a67_A Isochorismatase family 28.4 71 0.0024 27.4 5.1 42 135-176 95-136 (167)
85 3oz2_A Digeranylgeranylglycero 27.8 53 0.0018 31.2 4.5 28 144-173 7-34 (397)
86 2cul_A Glucose-inhibited divis 27.4 53 0.0018 29.5 4.2 31 143-175 5-35 (232)
87 1x9g_A Putative MAR1; structur 26.8 72 0.0025 28.5 4.9 38 140-177 106-143 (200)
88 2ywl_A Thioredoxin reductase r 25.6 85 0.0029 26.4 5.1 31 144-176 4-34 (180)
89 3kl2_A Putative isochorismatas 25.5 88 0.003 28.4 5.4 44 134-177 144-187 (226)
90 3rot_A ABC sugar transporter, 25.5 3.7E+02 0.013 24.2 15.4 44 279-328 178-226 (297)
91 4hb9_A Similarities with proba 25.4 64 0.0022 30.8 4.7 28 144-173 4-31 (412)
92 3ijr_A Oxidoreductase, short c 25.2 3.6E+02 0.012 24.7 9.9 34 140-175 47-80 (291)
93 4iin_A 3-ketoacyl-acyl carrier 25.1 2.8E+02 0.0097 25.0 9.0 34 140-175 29-62 (271)
94 3v2h_A D-beta-hydroxybutyrate 25.0 3E+02 0.01 25.2 9.2 33 140-174 25-57 (281)
95 3dme_A Conserved exported prot 24.8 65 0.0022 30.2 4.5 31 143-175 6-36 (369)
96 2oln_A NIKD protein; flavoprot 24.7 64 0.0022 31.1 4.5 31 143-175 6-36 (397)
97 4fk1_A Putative thioredoxin re 24.6 68 0.0023 29.8 4.5 29 143-173 8-36 (304)
98 2g1u_A Hypothetical protein TM 24.5 1.2E+02 0.004 25.2 5.7 32 142-175 20-51 (155)
99 4a5l_A Thioredoxin reductase; 24.5 59 0.002 30.0 4.1 29 143-173 6-34 (314)
100 4ffl_A PYLC; amino acid, biosy 24.4 93 0.0032 29.8 5.6 31 143-175 3-33 (363)
101 3pi7_A NADH oxidoreductase; gr 23.8 2E+02 0.007 27.2 8.0 55 132-193 156-210 (349)
102 3dwg_A Cysteine synthase B; su 23.7 4.7E+02 0.016 24.7 13.5 38 293-332 71-108 (325)
103 8abp_A L-arabinose-binding pro 23.4 1.7E+02 0.0057 26.6 7.0 37 292-328 194-233 (306)
104 3k9c_A Transcriptional regulat 23.4 1.6E+02 0.0055 26.7 6.9 35 292-328 184-222 (289)
105 3t7c_A Carveol dehydrogenase; 23.3 4.4E+02 0.015 24.2 11.3 34 140-175 28-61 (299)
106 1yzv_A Hypothetical protein; s 23.3 67 0.0023 28.8 4.0 44 134-177 103-146 (204)
107 3sg0_A Extracellular ligand-bi 23.2 4.5E+02 0.015 24.3 14.0 37 293-330 214-250 (386)
108 4gcm_A TRXR, thioredoxin reduc 23.0 76 0.0026 29.4 4.5 27 144-172 9-35 (312)
109 3r3s_A Oxidoreductase; structu 22.7 3.4E+02 0.012 25.0 9.1 33 140-174 49-81 (294)
110 2bm8_A Cephalosporin hydroxyla 22.4 84 0.0029 28.4 4.6 36 296-331 85-120 (236)
111 3kr9_A SAM-dependent methyltra 22.4 71 0.0024 29.3 4.0 37 293-331 14-50 (225)
112 3rp8_A Flavoprotein monooxygen 22.2 80 0.0027 30.6 4.7 31 143-175 25-55 (407)
113 3l49_A ABC sugar (ribose) tran 21.8 4.2E+02 0.014 23.5 17.8 34 293-328 191-225 (291)
114 1yvv_A Amine oxidase, flavin-c 21.7 80 0.0027 29.4 4.4 31 143-175 4-34 (336)
115 3iup_A Putative NADPH:quinone 21.7 2.3E+02 0.008 27.3 8.0 55 132-193 163-217 (379)
116 4dgk_A Phytoene dehydrogenase; 21.6 73 0.0025 31.9 4.3 28 143-172 3-30 (501)
117 3alj_A 2-methyl-3-hydroxypyrid 21.6 85 0.0029 30.2 4.7 32 142-175 12-43 (379)
118 1ryi_A Glycine oxidase; flavop 21.5 82 0.0028 30.0 4.5 31 143-175 19-49 (382)
119 3k4h_A Putative transcriptiona 21.5 2E+02 0.0068 25.8 7.1 34 292-327 191-228 (292)
120 2q5c_A NTRC family transcripti 21.4 1.1E+02 0.0038 27.1 5.0 98 36-175 71-169 (196)
121 3cgv_A Geranylgeranyl reductas 21.2 83 0.0028 30.0 4.5 31 143-175 6-36 (397)
122 3efb_A Probable SOR-operon reg 21.1 2.1E+02 0.0073 26.4 7.2 91 258-353 27-121 (266)
123 4gqb_A Protein arginine N-meth 21.0 86 0.0029 33.5 4.8 35 296-330 359-395 (637)
124 3dbi_A Sugar-binding transcrip 20.8 1.7E+02 0.0059 27.2 6.7 35 292-328 241-279 (338)
125 3g85_A Transcriptional regulat 20.8 1.8E+02 0.0063 26.1 6.7 34 292-327 187-224 (289)
126 3utn_X Thiosulfate sulfurtrans 20.7 1.4E+02 0.0047 28.9 6.0 30 295-324 276-306 (327)
127 2x3n_A Probable FAD-dependent 20.7 86 0.0029 30.3 4.5 31 143-175 8-38 (399)
128 4at0_A 3-ketosteroid-delta4-5a 20.4 83 0.0028 32.0 4.5 30 143-174 43-72 (510)
129 2rgy_A Transcriptional regulat 20.3 2E+02 0.0069 26.0 6.9 44 279-328 179-226 (290)
130 2i0z_A NAD(FAD)-utilizing dehy 20.2 96 0.0033 30.8 4.9 35 138-175 24-58 (447)
No 1
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Probab=100.00 E-value=6.1e-55 Score=441.04 Aligned_cols=312 Identities=21% Similarity=0.290 Sum_probs=255.0
Q ss_pred ccccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEE
Q 013383 66 IHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLV 145 (444)
Q Consensus 66 ~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vv 145 (444)
.+++.... ++|||++ ++++++.+ |.+||+||||+|++.+||||+|++.+++.+|++.|.++||
T Consensus 23 ~~ri~~~~-----~~TPL~~---~~~l~~~~---------g~~v~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~G~~~vv 85 (342)
T 4d9b_A 23 FPRLEFIG-----APTPLEY---LPRLSDYL---------GREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLI 85 (342)
T ss_dssp SCCCCSSC-----SCCCEEE---CHHHHHHH---------TSCEEEEEGGGCSSTTCCTHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcccccC-----CCCceeE---hhhhHHhh---------CCEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHcCCCEEE
Confidence 45555544 9999999 88887665 4699999999996557999999999999999999999999
Q ss_pred EeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccc-----hhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcC
Q 013383 146 TCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQIL-----TGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGN 219 (444)
Q Consensus 146 t~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~-----~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~ 219 (444)
++||++||||+|+|++|+++|++|+||||+..|... .+|..+++.||+ |+.+++..+ +++..+..++
T Consensus 86 ~~s~tsGN~g~alA~aa~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~~~--~~~~~~~~a~----- 158 (342)
T 4d9b_A 86 TAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTD--PDAQLQTLAT----- 158 (342)
T ss_dssp EEEETTCHHHHHHHHHHHHHTCEEEEEEECTTCCCCHHHHHSHHHHHHHHTTCEEEECSCCSS--HHHHHHHHHH-----
T ss_pred EcCCcccHHHHHHHHHHHHhCCcEEEEEeCCCCCccccccccchHHHHHHCCCEEEEECchhh--HHHHHHHHHH-----
Confidence 988789999999999999999999999998877531 246677899998 999987522 2233221111
Q ss_pred CCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEE
Q 013383 220 NGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVV 299 (444)
Q Consensus 220 ~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv 299 (444)
++.+.++.+|++|+++.||.+.+||.+++.||++|+... ..||+||+
T Consensus 159 --------------------------------~l~~~~~~~~~~p~~~~n~~~~~G~~t~~~EI~~q~~~~-~~~d~vv~ 205 (342)
T 4d9b_A 159 --------------------------------RIEAQGFRPYVIPVGGSSALGAMGYVESALEIAQQCEEV-VGLSSVVV 205 (342)
T ss_dssp --------------------------------HHHHTTCCEEECCGGGCSHHHHHHHHHHHHHHHHHHTTT-CCCCEEEE
T ss_pred --------------------------------HHHhcCCceEEeCCCCCChHHHHHHHHHHHHHHHHHhcc-CCCCEEEE
Confidence 122334568999999999999999999999999997311 37999999
Q ss_pred eCCChhhHHHHHHHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEE
Q 013383 300 DAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFG 379 (444)
Q Consensus 300 ~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 379 (444)
|+|||||++|++.+++.+++.++|+||++++++....+....+...+++.++.. +...+.+++++.++.|.
T Consensus 206 ~vGtGGt~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~t~a~gl~~~---------~~~~~~~~~~~~d~~~~ 276 (342)
T 4d9b_A 206 ASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSVAEQKPKVIALQQAIAGQLALT---------ATADIHLWDDYFAPGYG 276 (342)
T ss_dssp EESSSHHHHHHHHHHHHHCTTSEEEEEESSSCHHHHHHHHHHHHHHHHHHTTCC---------CCCCCEEECTTSTTCTT
T ss_pred eCCCCHHHHHHHHHHHhhCCCCeEEEEEecCcHHHHHHHHHHHHHHHHHHcCCC---------CccceEEEecCCCceEe
Confidence 999999999999999999999999999999987655554434444555555431 12456678888999999
Q ss_pred ecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCCccchhhhhc
Q 013383 380 NVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTLGMFGLAQR 443 (444)
Q Consensus 380 v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~~~l~~~~~r 443 (444)
|+|+|+++++++|++++||++||+|+|++++++++++++ .++++++||+||||||++++++...
T Consensus 277 V~d~e~~~a~~~l~~~~gi~~epsYsa~a~aa~~~~~~~~~~~~~~~Vv~i~tGGn~~~~~~~~~ 341 (342)
T 4d9b_A 277 VPNDAGMEAVKLLASLEGVLLDPVYTGKAMAGLIDGISQKRFNDDGPILFIHTGGAPALFAYHPH 341 (342)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHHTCSSSSSCEEEEECCCTTHHHHHSSC
T ss_pred cCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHcCCCCCCCeEEEEECCCccchhhcccc
Confidence 999999999999999999999999999999999998765 4667899999999999999988653
No 2
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Probab=100.00 E-value=2e-54 Score=436.84 Aligned_cols=317 Identities=25% Similarity=0.278 Sum_probs=253.3
Q ss_pred ccccccccccccccCCCCCccccccccccccCCCccccCCC-CeEEEEeCCCC-CCCCcchhhHHHHhhHHHHHhcCCCe
Q 013383 66 IHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDED-RCFYVVRDDLL-HPLVNGNKARKMDALLPLLEDHIVTD 143 (444)
Q Consensus 66 ~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g-~~l~vKrEdl~-~p~~ggnK~Rkl~~~l~~a~~~g~~~ 143 (444)
++++.... ++|||++ ++++++.+| | .+||+||||+| ++.+||||+|++.++|.+|.++|.++
T Consensus 6 ~~~i~~~~-----~~TPL~~---~~~l~~~~~--------g~~~i~~K~E~~n~p~~~Gs~K~R~a~~~l~~a~~~g~~~ 69 (341)
T 1f2d_A 6 FAKYPLTF-----GPSPISN---LNRLSQHLG--------SKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTH 69 (341)
T ss_dssp SCCCCCSS-----SSCCEEE---CHHHHHHTT--------TCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCCSE
T ss_pred CCCcccCC-----CCCccee---HHhHHHhhC--------CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCCCE
Confidence 34455544 9999999 888877652 3 69999999998 65579999999999999999999999
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCC-----cc---chhhhHHHHhCCc-EEEeCCcchhh-HHHHHHHHh
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQP-----QI---LTGYNLISTIYGK-VTYVPRTHYAH-RIEMLKSYA 213 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~-----~~---~~~~~~~~~~~Ga-V~~v~~~~~~~-~~~~~~~~A 213 (444)
||++|+|+||||+|+|++|+++|++|+||||+..+ +. +.+|..+++.||+ |+++++..+.. .+.+. ..+
T Consensus 70 vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~-~~a 148 (341)
T 1f2d_A 70 LVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFA-NAL 148 (341)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHH-HHH
T ss_pred EEEcCCcchHHHHHHHHHHHHhCCceEEEeccCCCccccccccccccccHHHHHhCCCEEEEeCCccchhHHHHHH-HHH
Confidence 99999999999999999999999999999998876 21 1347778899998 99998754311 01111 111
Q ss_pred hhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCC-CccHHHHHHHHHHHHHHHHhHHcCCC
Q 013383 214 NLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG-AGDAVALLGVFRLLQYLSQDHLLGRK 292 (444)
Q Consensus 214 ~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g-~~np~~~~G~~t~~~Ei~~q~~~g~~ 292 (444)
+ ++.+..+..|++|.+ +.||....||.+++.||++|+...+.
T Consensus 149 ~-------------------------------------~l~~~~~~~~~i~~~~~~np~~~~G~~t~~~Ei~~q~~~~~~ 191 (341)
T 1f2d_A 149 Q-------------------------------------ELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELGI 191 (341)
T ss_dssp H-------------------------------------HHHHTTCCEEEECGGGTTSTTTTTHHHHHHHHHHHHHHHHTC
T ss_pred H-------------------------------------HHHhcCCcEEEeCCCcCCCCccHHHHHHHHHHHHHHHHhcCC
Confidence 1 122233447889998 99999999999999999999741123
Q ss_pred CcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeec
Q 013383 293 RAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVER 372 (444)
Q Consensus 293 ~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~ 372 (444)
.||+||+|+|||||++|++.+++++++.++|+||++.++..........+...+++.++... . . ..+.++++
T Consensus 192 ~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~~~~ig~~~---~---~--~~~~~~~~ 263 (341)
T 1f2d_A 192 KFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLRIANNTAKLIGVEH---E---F--KDFTLDTR 263 (341)
T ss_dssp CCSEEEEEESSSHHHHHHHHHHGGGTCGGGEEEEECSSCHHHHHHHHHHHHHHHHHHHTCCC---C---C--SCCCEECT
T ss_pred CCCEEEEecCchHhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHHcCCCC---C---c--CeEEEecC
Confidence 69999999999999999999999999999999999999876554433333334444444211 1 1 24567788
Q ss_pred ccCCeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhc-CCCCCeEEEEEcCCCccchhhhhcC
Q 013383 373 CRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK-LKQDADVVMLHTGGTLGMFGLAQRI 444 (444)
Q Consensus 373 ~~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~-~~~g~~Vv~i~TGG~~~l~~~~~ry 444 (444)
+.++.|.|+|+|+++++++|++++||++||+|+|++++++++++++. +.++++||+|||||+++++.+..+|
T Consensus 264 ~~~~~~~v~d~e~~~a~~~l~~~egi~~ep~~sa~alaa~~~~~~~~~~~~~~~Vv~i~tGG~~~~~~~~~~~ 336 (341)
T 1f2d_A 264 FAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYVHLGGAPALSAYSSFF 336 (341)
T ss_dssp TSTTBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEEEECCCGGGGGGGGGGC
T ss_pred cccceEecCCHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHhCCCCCCCeEEEEECCchHHhhhhHHHh
Confidence 89999999999999999999999999999999999999999987643 5678999999999999999998876
No 3
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=100.00 E-value=5.3e-53 Score=423.80 Aligned_cols=306 Identities=24% Similarity=0.310 Sum_probs=245.9
Q ss_pred ccccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEE
Q 013383 66 IHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLV 145 (444)
Q Consensus 66 ~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vv 145 (444)
++++...+ ++|||++ ++++++.+ |.+||+||||+|++.+||||+|++.+++.+|++.|.++||
T Consensus 12 ~~~i~~~~-----~~TPL~~---~~~l~~~~---------g~~i~~K~E~~~p~~~gs~K~R~~~~~i~~a~~~G~~~vv 74 (325)
T 1j0a_A 12 FPRVELIP-----WETPIQY---LPNISREI---------GADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVI 74 (325)
T ss_dssp CCCCCCCC-----SCCCEEE---CHHHHHHH---------TSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTCSEEE
T ss_pred CCCccccc-----CCCCceE---hhhhhhhh---------CCEEEEEecccCCCCCCchHHHHHHHHHHHHHHcCCCEEE
Confidence 44555554 9999999 88877655 4699999999985346899999999999999999999999
Q ss_pred EeCcccchHHHHHHHHHHHhCCeEEEEecCCC-CccchhhhHHHHhCCc-EEEeCCcchhhH-HHHHHHHhhhhhcCCCC
Q 013383 146 TCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ-PQILTGYNLISTIYGK-VTYVPRTHYAHR-IEMLKSYANLVAGNNGD 222 (444)
Q Consensus 146 t~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~-~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~-~~~~~~~A~~~a~~~g~ 222 (444)
|+|+|+||||+|+|++|+++|++|+||||+.. +. .+..+++.||+ |+++++..+... .++. ..+
T Consensus 75 ~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~~-~~a--------- 141 (325)
T 1j0a_A 75 TVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELK---GNYLLDKIMGIETRVYDAKDSFELMKYAE-EIA--------- 141 (325)
T ss_dssp EECCTTCHHHHHHHHHHHHTTCEEEEEEESCCCSC---HHHHHHHHTTCEEEEESCCSTTTHHHHHH-HHH---------
T ss_pred EcCCcchHHHHHHHHHHHHhCCcEEEEECCCCCCC---chHHHHHHCCCEEEEeCcchhhhhhHHHH-HHH---------
Confidence 99889999999999999999999999999877 53 46667899998 999987543210 0111 111
Q ss_pred ccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCC
Q 013383 223 VVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAG 302 (444)
Q Consensus 223 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vG 302 (444)
.++.+..+..|++|+++.||.+.+||.+++.||++|+ + ..||+||+|+|
T Consensus 142 ----------------------------~~l~~~~~~~~~~p~~~~n~~~~~g~~t~~~Ei~~q~--~-~~~d~vv~~vG 190 (325)
T 1j0a_A 142 ----------------------------EELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQS--E-VKFDSIVVAAG 190 (325)
T ss_dssp ----------------------------HHHTTSSCCEEEECGGGCSHHHHTHHHHHHHHHHHHC--C-CCCSEEEEEES
T ss_pred ----------------------------HHHHHcCCceEEEcCCCCCHHHHHHHHHHHHHHHHhh--C-CCCCEEEEeCC
Confidence 1223344567899999999999999999999999995 3 37999999999
Q ss_pred ChhhHHHHHHHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecC
Q 013383 303 TGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVF 382 (444)
Q Consensus 303 tGgt~aGl~~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d 382 (444)
||||++|++.+++++++.+||+|||+.+++.........+.+++...++. + ...++.+++++.++ |.|+|
T Consensus 191 tGGt~~Gi~~~lk~~~~~~~vigVe~~~~~~~~~~~~~t~~~~~~~~~g~---~------~~~~~~~~~~~~~~-~~v~d 260 (325)
T 1j0a_A 191 SGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGV---K------VEVRPELYDYSFGE-YGKIT 260 (325)
T ss_dssp SSHHHHHHHHHHHHTTCCCEEEEEECSSCSSSHHHHHHHHHHHHHHHTTC---C------CCSCCEEEECSTTS-TTCCC
T ss_pred chHhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHhcCC---C------CCCCcEEecCcccC-CCCCC
Confidence 99999999999999999999999999997655544333333444333321 1 01234567788899 99999
Q ss_pred hHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhhhhc
Q 013383 383 EGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQR 443 (444)
Q Consensus 383 ~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~~~r 443 (444)
+|+++++++|++++||++||+|+|++++++++++++.. .+++||+|||||+++++.+.++
T Consensus 261 ~e~~~a~~~l~~~~gi~~ep~ssa~a~aa~~~~~~~~~-~~~~Vv~i~tGG~~~~~~~~~~ 320 (325)
T 1j0a_A 261 GEVAQIIRKVGTREGIILDPVYTGKAFYGLVDLARKGE-LGEKILFIHTGGISGTFHYGDK 320 (325)
T ss_dssp HHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTC-SCSEEEEEECCCHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhhCcccccchHHHHHHHHHHHHHcCC-CCCcEEEEECCCchhhhchHHH
Confidence 99999999999999999999989999999999876432 2889999999999999988765
No 4
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Probab=100.00 E-value=4.6e-52 Score=418.69 Aligned_cols=317 Identities=22% Similarity=0.263 Sum_probs=248.8
Q ss_pred cccccccccccccccCCCCCccccccccccccCCCccccCCC-CeEEEEeCCCC-CCCCcchhhHHHHhhHHHHHhcCCC
Q 013383 65 KIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDED-RCFYVVRDDLL-HPLVNGNKARKMDALLPLLEDHIVT 142 (444)
Q Consensus 65 ~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g-~~l~vKrEdl~-~p~~ggnK~Rkl~~~l~~a~~~g~~ 142 (444)
.++++.... ++|||++ ++++++.++ | .+||+||||+| ++.+||||+|++.+++.++.+.|.+
T Consensus 5 ~~~~i~~~~-----~~TPL~~---~~~l~~~~~--------g~~~i~~K~E~~n~p~~~gs~K~R~a~~~l~~a~~~g~~ 68 (338)
T 1tzj_A 5 RFPRYPLTF-----GPTPIQP---LARLSKHLG--------GKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCD 68 (338)
T ss_dssp GSCCCCCSS-----SSCCEEE---CHHHHHHTT--------SSSEEEEEEGGGSCSSTTCCHHHHHHHTTHHHHHHTTCC
T ss_pred cCCccccCC-----CCCccEE---HHHHHHhhC--------CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCCC
Confidence 345555544 9999999 888876652 3 69999999996 6337999999999999999999999
Q ss_pred eEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCcc-----chhhhHHHHhCCc-EEEeCCcchhhH-HHHHHHHhhh
Q 013383 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQI-----LTGYNLISTIYGK-VTYVPRTHYAHR-IEMLKSYANL 215 (444)
Q Consensus 143 ~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~-----~~~~~~~~~~~Ga-V~~v~~~~~~~~-~~~~~~~A~~ 215 (444)
+||++|+|+||||+|+|++|+++|++|+||||...+.. +.++..+++.||+ |+.+++. +++. .+.....++
T Consensus 69 ~vv~~GassGN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~-~~~~~~~~~~~~a~- 146 (338)
T 1tzj_A 69 TLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDG-FDIGFRRSWEDALE- 146 (338)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEEECCC--------CHHHHHHH-
T ss_pred EEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCCCccccccccCccHHHHHhCCCEEEEeCCc-chhhHHHHHHHHHH-
Confidence 99998889999999999999999999999999887643 1246678899998 9999874 3221 000011111
Q ss_pred hhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCC-CccHHHHHHHHHHHHHHHHhHH-cCCCC
Q 013383 216 VAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG-AGDAVALLGVFRLLQYLSQDHL-LGRKR 293 (444)
Q Consensus 216 ~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g-~~np~~~~G~~t~~~Ei~~q~~-~g~~~ 293 (444)
++.+..+.+|++|.+ +.||...+||.+++.||++|+. .+ ..
T Consensus 147 ------------------------------------~l~~~~~~~~~~p~~~~~n~~~~~g~~t~~~Ei~~q~~~~~-~~ 189 (338)
T 1tzj_A 147 ------------------------------------SVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELG-FK 189 (338)
T ss_dssp ------------------------------------HHHHTTCCEEECCGGGTSSTTTTTHHHHHHHHHHHHHHHHT-SC
T ss_pred ------------------------------------HHHhcCCceEEeCCCcCCCcccHHHHHHHHHHHHHHHHhcC-CC
Confidence 122234457889998 8999999999999999999973 22 26
Q ss_pred cCEEEEeCCChhhHHHHHHHHHhc-CCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeec
Q 013383 294 AIKFVVDAGTGTTAVGLGLGAICL-GLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVER 372 (444)
Q Consensus 294 ~d~vvv~vGtGgt~aGl~~~~~~~-g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~ 372 (444)
||+||+|+|||||++|++.+++++ ++. +|+||+++++.....+....+..++++.++.+. + ++...+.++++
T Consensus 190 ~d~vv~~vG~GGt~~Gi~~~~k~~g~~~-~vigve~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-----~~~~~~~~~~~ 262 (338)
T 1tzj_A 190 FDYVVVCSVTGSTQAGMVVGFAADGRAD-RVIGVDASAKPAQTREQITRIARQTAEKVGLER-D-----IMRADVVLDER 262 (338)
T ss_dssp CSEEEEEESSSHHHHHHHHHHHTTTCGG-GEEEEECSSCHHHHHHHHHHHHHHHHHHHTCSS-C-----CCGGGCEEECT
T ss_pred CCEEEEecCCcHHHHHHHHHHHhhCCCC-eEEEEEccCchHHHHHHHHHHHHHHHHHcCCCC-C-----CCcccEEEecC
Confidence 999999999999999999999988 677 999999999866544433333344444444321 1 22345677888
Q ss_pred ccCCeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCCccchhhhhc
Q 013383 373 CRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTLGMFGLAQR 443 (444)
Q Consensus 373 ~~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~~~l~~~~~r 443 (444)
+.++.|.|+|+|+++++++|++++||++||+|+|++++++++++++ .+.++++||+|||||+++++.+.+.
T Consensus 263 ~~~~~~~v~d~e~~~a~~~l~~~~gi~~ep~ysa~alaa~~~~~~~~~~~~~~~Vv~i~tGG~~~~~~~~~~ 334 (338)
T 1tzj_A 263 FAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYAHLGGVPALNGYSFI 334 (338)
T ss_dssp TSCSBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEEEECCCGGGGGGGTGG
T ss_pred cccceeecCCHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHcCCCCCCCeEEEEECCCcccccchHHH
Confidence 8999999999999999999999999999999899999999998764 3567899999999999999988654
No 5
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=100.00 E-value=3.3e-47 Score=385.15 Aligned_cols=289 Identities=12% Similarity=0.104 Sum_probs=222.4
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhc----CCCeEEEeCcccchH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDH----IVTDLVTCGGCQSAH 154 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~----g~~~Vvt~G~s~GNh 154 (444)
++|||++ ++++++.+ |.+||+|+||+| | +||||+|++.+++.++.+. +.++||++ |+|||
T Consensus 24 ~~TPL~~---~~~l~~~~---------g~~i~~K~E~~~-p-tGSfK~Rga~~~i~~a~~~g~~~~~~~vv~~--SsGNh 87 (346)
T 3l6b_A 24 HLTPVLT---SSILNQLT---------GRNLFFKCELFQ-K-TGSFKIRGALNAVRSLVPDALERKPKAVVTH--SSGNH 87 (346)
T ss_dssp CCCCEEC---CHHHHHHH---------TSEEEEEEGGGS-G-GGBTHHHHHHHHHHTTC-----CCCSCEEEE--CSSHH
T ss_pred CCCCeEE---chhhHHHh---------CCeEEEEeCCCC-C-CCCcHHHHHHHHHHHHHHhccccCCCEEEEe--CCCHH
Confidence 8999999 88887765 469999999999 6 8999999999999998774 66789987 46999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHH
Q 013383 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEAS 233 (444)
Q Consensus 155 g~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~ 233 (444)
|+|+|++|+++|++|+||||...|. .+..+++.||+ |+.+++. ++++.+. ++++
T Consensus 88 g~a~A~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~v~~~-~~~~~~~----a~~l----------------- 142 (346)
T 3l6b_A 88 GQALTYAAKLEGIPAYIVVPQTAPD---CKKLAIQAYGASIVYCEPS-DESRENV----AKRV----------------- 142 (346)
T ss_dssp HHHHHHHHHHTTCCEEEEEETTSCH---HHHHHHHHTTCEEEEECSS-HHHHHHH----HHHH-----------------
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCH---HHHHHHHHCCCEEEEECCC-HHHHHHH----HHHH-----------------
Confidence 9999999999999999999998764 35567899998 9999874 5543322 1111
Q ss_pred HHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHH
Q 013383 234 LTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLG 313 (444)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~ 313 (444)
.+..+..|+.|++ ||....|+.+++.||++|+ +.||+||+|+|||||++|++.+
T Consensus 143 --------------------~~~~~~~~i~~~~--np~~~~g~~t~~~Ei~~q~----~~~d~vvv~vG~GG~~aGi~~~ 196 (346)
T 3l6b_A 143 --------------------TEETEGIMVHPNQ--EPAVIAGQGTIALEVLNQV----PLVDALVVPVGGGGMLAGIAIT 196 (346)
T ss_dssp --------------------HHHHTCEECCSSS--CHHHHHHHHHHHHHHHHHS----TTCCEEEEECSSSHHHHHHHHH
T ss_pred --------------------HHhcCCEEECCCC--ChHHHHHHHHHHHHHHHhC----CCCCEEEEecCccHHHHHHHHH
Confidence 1122345655554 8999999999999999995 3799999999999999999999
Q ss_pred HHhcCCCCeEEEEeccCChhHHHHHHHHH-HH--HHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHH
Q 013383 314 AICLGLPWEVTAIALVDTIDGYKQQEKNL-IS--EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (444)
Q Consensus 314 ~~~~g~~~~vigV~~~~~~~~~~~~~~~l-~~--~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~ 390 (444)
++.++++++|+||++.+++....+...+. .. ...+++..++ . ..++...+.+++++.++.+.|+|+|++++++
T Consensus 197 ~k~~~p~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~~tia~gl---~-~~~g~~~~~~~~~~~d~~~~V~d~e~~~a~~ 272 (346)
T 3l6b_A 197 VKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGV---K-SSIGLNTWPIIRDLVDDIFTVTEDEIKCATQ 272 (346)
T ss_dssp HHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGG---C-SCCCTTHHHHHHHHCCEEEEECHHHHHHHHH
T ss_pred HHHhCCCCEEEEEecCCCHHHHHHHHcCCccccCCCCCchhhhc---c-CCCcHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 99999999999999998764333221100 00 0000111111 0 1123345566777889999999999999999
Q ss_pred HHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCCccchh
Q 013383 391 RIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTLGMFG 439 (444)
Q Consensus 391 ~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~~~l~~ 439 (444)
++++++||++||+ +|++++++++.... ..+++++||+||||||.++..
T Consensus 273 ~l~~~~gi~~eps-sa~alaa~~~~~~~~~~~~~~~Vv~i~sGG~~d~~~ 321 (346)
T 3l6b_A 273 LVWERMKLLIEPT-AGVGVAAVLSQHFQTVSPEVKNICIVLSGGNVDLTS 321 (346)
T ss_dssp HHHHHHCCCCCHH-HHHHHHHHHSGGGGGSCTTCCEEEEEECBCCCCTTG
T ss_pred HHHHHCCcEEcHH-HHHHHHHHHHhhhhhccCCCCeEEEEcCCCCCCHHH
Confidence 9999999999998 79999999865433 345689999999999998876
No 6
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=100.00 E-value=2.8e-46 Score=380.78 Aligned_cols=288 Identities=16% Similarity=0.151 Sum_probs=219.0
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAV 158 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~al 158 (444)
++|||++ ++++++.+ |.+||+|+||+| | +||||+|++.+++.++.+.|.++||+++ +||||+|+
T Consensus 45 ~~TPL~~---~~~l~~~~---------g~~v~~K~E~~~-p-tGSfK~Rga~~~i~~a~~~g~~~vv~aS--sGN~g~al 108 (364)
T 4h27_A 45 VKTPIRD---SMALSKMA---------GTSVYLKMDSAQ-P-SGSFKIRGIGHFCKRWAKQGCAHFVCSS--SGNAGMAA 108 (364)
T ss_dssp CCCCEEE---EHHHHHHH---------TSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTCCEEEECC--SSHHHHHH
T ss_pred CcCCeEE---ChhhHHHh---------CCEEEEEeCCCC-C-CCCHHHHHHHHHHHHHHhcCCCEEEEeC--CChHHHHH
Confidence 8999999 88888766 469999999999 6 8999999999999999999999999874 49999999
Q ss_pred HHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhh
Q 013383 159 AVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQ 237 (444)
Q Consensus 159 A~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~ 237 (444)
|++|+++|++|+||||...+.. +..+++.||+ |+.+++ .|+++.+.. ++
T Consensus 109 A~aa~~~G~~~~iv~p~~~~~~---k~~~~~~~GA~Vv~v~~-~~~~a~~~a----~~---------------------- 158 (364)
T 4h27_A 109 AYAARQLGVPATIVVPGTTPAL---TIERLKNEGATVKVVGE-LLDEAFELA----KA---------------------- 158 (364)
T ss_dssp HHHHHHHTCCEEEEEETTSCHH---HHHHHHTTTCEEEEECS-STTHHHHHH----HH----------------------
T ss_pred HHHHHHhCCceEEEECCCCCHH---HHHHHHHcCCEEEEECC-CHHHHHHHH----HH----------------------
Confidence 9999999999999999987643 4567899998 999986 466533321 11
Q ss_pred hhhccccccccccccccccC-CcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 238 KSRASCLGQMDAHKGIDNCR-KKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~-~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
+.+.. +..|+.|+ .||....|+.+++.||++|+ + ..||+||+|+|||||++|++.+++.
T Consensus 159 ---------------l~~~~~~~~~~~~~--~np~~~~G~~t~~~Ei~~q~--~-~~~D~vvvpvG~GG~~aGi~~~~k~ 218 (364)
T 4h27_A 159 ---------------LAKNNPGWVYIPPF--DDPLIWEGHASIVKELKETL--W-EKPGAIALSVGGGGLLCGVVQGLQE 218 (364)
T ss_dssp ---------------HHHHSTTEEEECSS--CSHHHHHHHTHHHHHHHHHC--S-SCCSEEEEECSSSHHHHHHHHHHHH
T ss_pred ---------------HHHhCCCeEEeCCC--CCHHHHHHHHHHHHHHHHHh--C-CCCCEEEEcCCccHHHHHHHHHHHH
Confidence 11222 23444443 68999999999999999995 2 2699999999999999999999998
Q ss_pred cC-CCCeEEEEeccCChhHHHHHHHHH------HHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHH
Q 013383 317 LG-LPWEVTAIALVDTIDGYKQQEKNL------ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEAC 389 (444)
Q Consensus 317 ~g-~~~~vigV~~~~~~~~~~~~~~~l------~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~ 389 (444)
++ ++++|+|||+.+++........+. ...+++.++ .+.++...+.+++++.+..+.|+|+|+++++
T Consensus 219 ~~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~tia~gl~-------~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~ 291 (364)
T 4h27_A 219 VGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALG-------VKTVGAQALKLFQEHPIFSEVISDQEAVAAI 291 (364)
T ss_dssp TTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGC-------CSSCCHHHHHHHTTSCEEEEEECHHHHHHHH
T ss_pred hCCCCCeEEEEecCCChHHHHHHHCCCcccCCCCCcHHHHhC-------CCCCcHHHHHHHHhcCCEEEEECHHHHHHHH
Confidence 87 789999999998765332211100 000111111 1112223455566666667889999999999
Q ss_pred HHHHHHhCCcccccccHHHHHHHH-----HHhhh-cCCC-CCeEEEEEcCCC-ccchhh
Q 013383 390 HRIAQLTGILVDPVYTLAAWEMAT-----LLSDE-KLKQ-DADVVMLHTGGT-LGMFGL 440 (444)
Q Consensus 390 ~~la~~eGI~vEP~ysaaa~aal~-----~l~~~-~~~~-g~~Vv~i~TGG~-~~l~~~ 440 (444)
++|++++||++||+ +|+++++++ ++.++ .+++ +++||+|||||| +++..+
T Consensus 292 ~~l~~~egi~~eps-~aaalaa~~~~k~~~l~~~g~~~~~~~~Vv~v~tGG~~~d~~~l 349 (364)
T 4h27_A 292 EKFVDDEKILVEPA-CGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQL 349 (364)
T ss_dssp HHHHHHHCCCCCHH-HHHHHHHHHTTHHHHHHHTTSSCSSCCEEEEEECBCSSCCHHHH
T ss_pred HHHHHHCCCeEccc-HHHHHHHHHhhhhHHhhhccCcCCCCCeEEEEECCCCCCCHHHH
Confidence 99999999999997 689999885 34332 3443 589999999997 776543
No 7
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine deaminase, PLP, threonine DEH L-threonine metabolism; HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A* 2gn2_A*
Probab=100.00 E-value=1.2e-46 Score=380.33 Aligned_cols=291 Identities=12% Similarity=0.098 Sum_probs=222.2
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHH-hcCCCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~-~~g~~~Vvt~G~s~GNhg~a 157 (444)
++|||++ ++++++.+ |.+||+|+|++| | +||||+|++.+++.++. +.+.++||++ |+||||+|
T Consensus 39 ~~TPL~~---l~~l~~~~---------g~~i~~K~E~~~-p-tGSfKdR~a~~~i~~a~~~~~~~~vv~~--ssGN~g~a 102 (342)
T 2gn0_A 39 YKTGMPR---SNYFSERC---------KGEIFLKFENMQ-R-TGSFKIRGAFNKLSSLTEAEKRKGVVAC--SAGNHAQG 102 (342)
T ss_dssp CCCCCCB---CHHHHHHH---------TSEEEEEEGGGS-G-GGBTHHHHHHHHHHHSCHHHHHTCEEEE--CSSHHHHH
T ss_pred CCCCceE---chhhHHHh---------CCEEEEEEccCC-C-cCChHHHHHHHHHHHHHHhcCCCEEEEE--CCChHHHH
Confidence 8999999 88887665 469999999998 7 79999999999999875 4566789986 57999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+++|++|+||||...+. .+..+++.||+ |+.+++. |+++.+. ++++
T Consensus 103 lA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~-~~~~~~~----a~~l-------------------- 154 (342)
T 2gn0_A 103 VSLSCAMLGIDGKVVMPKGAPK---SKVAATCDYSAEVVLHGDN-FNDTIAK----VSEI-------------------- 154 (342)
T ss_dssp HHHHHHHHTCCEEEEECTTSCH---HHHHHHHHHSCEEEECCSS-HHHHHHH----HHHH--------------------
T ss_pred HHHHHHHcCCCEEEEECCCCCH---HHHHHHHHcCCEEEEECCC-HHHHHHH----HHHH--------------------
Confidence 9999999999999999988754 35667899998 9999874 6543222 1111
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
.+..+..|+.|+ .||....||.+++.||++|+ +.||+||+|+|||||++|++.++++
T Consensus 155 -----------------~~~~~~~~~~~~--~n~~~~~g~~t~~~Ei~~q~----~~~d~vvvpvG~GG~~~Gi~~~~k~ 211 (342)
T 2gn0_A 155 -----------------VETEGRIFIPPY--DDPKVIAGQGTIGLEIMEDL----YDVDNVIVPIGGGGLIAGIAIAIKS 211 (342)
T ss_dssp -----------------HHHHCCEECCSS--SSHHHHHHHHHHHHHHHHHC----TTCCEEEEECSSSHHHHHHHHHHHH
T ss_pred -----------------HHhcCCEEeCCC--CCHHHHHHHHHHHHHHHHHc----CCCCEEEEecCCchHHHHHHHHHHH
Confidence 111223444444 47999999999999999995 2699999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHHHHHHH--HHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKNLISEF--KRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~ 394 (444)
.++.++|+||++++++....+...+..... ..++..+ +....++...+.+++++.++.|.|+|+|+++++++|++
T Consensus 212 ~~p~~~vigve~~~~~~~~~s~~~g~~~~~~~~~t~a~g---l~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~ 288 (342)
T 2gn0_A 212 INPTIKVIGVQAENVHGMAASYYTGEITTHRTTGTLADG---CDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQ 288 (342)
T ss_dssp HCTTSEEEEEEETTBCHHHHHHHHTSCCCCCSSCCSCGG---GCCSSCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHH
T ss_pred hCCCCeEEEEEeCCChhHHHHHHcCCccccCCCCccccc---cCCCCccHHHHHHHHHcCCEEEEECHHHHHHHHHHHHH
Confidence 999999999999987543322111000000 0001111 11111222344566778899999999999999999999
Q ss_pred HhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCCccchhhh
Q 013383 395 LTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTLGMFGLA 441 (444)
Q Consensus 395 ~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~~~l~~~~ 441 (444)
++||++||+ +|+++++++++.+. .+ ++++||+|||||++++..+.
T Consensus 289 ~~gi~~eps-sa~alaa~~~~~~~~~~-~~~~Vv~i~tGg~~d~~~~~ 334 (342)
T 2gn0_A 289 RNKVITEGA-GALACAALLSGKLDSHI-QNRKTVSIISGGNIDLSRVS 334 (342)
T ss_dssp HHCBCCCTG-GGHHHHHHHHTTTHHHH-TTSEEEEEECBCCCCHHHHH
T ss_pred HcCeEEcHH-HHHHHHHHHHhhhhccC-CCCEEEEEECCCCCCHHHHH
Confidence 999999998 89999999987542 34 68999999999999987764
No 8
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1
Probab=100.00 E-value=3.4e-46 Score=371.93 Aligned_cols=286 Identities=16% Similarity=0.085 Sum_probs=217.5
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAV 158 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~al 158 (444)
++|||++ ++++++.+ |.+||+|+|++| | +||||||.+.+++..+. +.++||++ |+||||+|+
T Consensus 19 ~~TPL~~---~~~l~~~~---------g~~i~~K~E~~~-p-tgSfKdR~a~~~i~~l~--~~~~vv~~--ssGN~g~al 80 (311)
T 1ve5_A 19 HRTPLLT---SRLLDGLL---------GKRLLLKAEHLQ-K-TGSFKARGALSKALALE--NPKGLLAV--SSGNHAQGV 80 (311)
T ss_dssp CCCCEEE---CHHHHHHT---------TSEEEEEEGGGS-G-GGBTHHHHHHHHHHHSS--SCCCEEEE--CSSHHHHHH
T ss_pred CCCCcee---chhhHHhh---------CCeEEEEecCCC-C-cCCcHHHHHHHHHHHhc--CCCeEEEE--CCCcHHHHH
Confidence 8999999 88877654 469999999998 7 89999999999998876 66789987 479999999
Q ss_pred HHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhh
Q 013383 159 AVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQ 237 (444)
Q Consensus 159 A~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~ 237 (444)
|++|+++|++|+||||...+.. +..+++.||+ |+.+++. |+++.+.. +++
T Consensus 81 A~~a~~~G~~~~iv~p~~~~~~---k~~~~~~~GA~V~~~~~~-~~~~~~~a----~~~--------------------- 131 (311)
T 1ve5_A 81 AYAAQVLGVKALVVMPEDASPY---KKACARAYGAEVVDRGVT-AKNREEVA----RAL--------------------- 131 (311)
T ss_dssp HHHHHHHTCCEEEECCCC--CC---HHHHHHHTTCEEECTTCC-TTTHHHHH----HHH---------------------
T ss_pred HHHHHHcCCCEEEEECCCCCHH---HHHHHHHcCCEEEEECCC-HHHHHHHH----HHH---------------------
Confidence 9999999999999999887653 5567899998 9988864 66543321 111
Q ss_pred hhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHH-cCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 238 KSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~-~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
.+..+..|+.|++ ||...+||.+++.||++|+. .+ ..||+||+|+|||||++|++.++++
T Consensus 132 ----------------~~~~~~~~~~~~~--n~~~~~g~~t~~~Ei~~q~~~~~-~~~d~vvvpvG~Gg~~~Gi~~~~k~ 192 (311)
T 1ve5_A 132 ----------------QEETGYALIHPFD--DPLVIAGQGTAGLELLAQAGRMG-VFPGAVLAPVGGGGLLAGLATAVKA 192 (311)
T ss_dssp ----------------HHHHCCEECCSSS--SHHHHHHHHHHHHHHHHHHHHHT-CCCSEEEEECSSSHHHHHHHHHHHH
T ss_pred ----------------HHhcCcEecCCCC--CcchhhhccHHHHHHHHHHHhcC-CCCCEEEEccCchHHHHHHHHHHHH
Confidence 1112234444443 89999999999999999973 22 2699999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHHHHHHH---HHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKNLISEF---KRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIA 393 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~l~~~~---~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la 393 (444)
+++.++|+||++++++..+.+...+..... ..++..++ ..+.++...+.+++++.++.|.|+|+|+++++++++
T Consensus 193 ~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~i~~gl---~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~ 269 (311)
T 1ve5_A 193 LSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGV---RTLSLGERTFPILRERVDGILTVSEEALLEAERLLF 269 (311)
T ss_dssp HCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGG---CCSSCCTTTHHHHHHHCCEEEEECHHHHHHHHHHHH
T ss_pred hCCCCEEEEEEeCCChHHHHHHHcCCccccCCCCCeeeCcC---CCCCccHHHHHHHHhcCCEEEEECHHHHHHHHHHHH
Confidence 999999999999886543322111000000 00111111 111122234455677788999999999999999999
Q ss_pred HHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccc
Q 013383 394 QLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGM 437 (444)
Q Consensus 394 ~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l 437 (444)
+++||++||+ +|+++++++++.++ . +++||+|||||++++
T Consensus 270 ~~~gi~~eps-sa~alaa~~~~~~~--~-~~~vv~i~tgg~~d~ 309 (311)
T 1ve5_A 270 TRTKQVVEPT-GALPLAAVLEHGAR--L-PQTLALLLSGGNRDF 309 (311)
T ss_dssp HHTCBCCCGG-GGHHHHHHHHHGGG--S-CSEEEEEECBCCCCC
T ss_pred HhcCceEchH-HHHHHHHHHhhhhc--c-CCEEEEEECCCCCCC
Confidence 9999999998 89999999988654 4 899999999999885
No 9
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A*
Probab=100.00 E-value=2.2e-46 Score=375.43 Aligned_cols=291 Identities=15% Similarity=0.136 Sum_probs=220.5
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHH-hcCCCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~-~~g~~~Vvt~G~s~GNhg~a 157 (444)
++|||++ ++++++.+ |.+||+|+||+| | +||||+|++.+++.++. +.+.++||++ |+||||+|
T Consensus 25 ~~TPL~~---~~~l~~~~---------g~~i~~K~E~~~-p-tGS~KdRga~~~i~~~~~~~~~~~vv~~--ssGN~g~a 88 (323)
T 1v71_A 25 NKTPVLT---SSTVNKEF---------VAEVFFKCENFQ-K-MGAFKFRGALNALSQLNEAQRKAGVLTF--SSGNHAQA 88 (323)
T ss_dssp CCCCEEC---CHHHHHHH---------TSEEEEEEGGGS-G-GGBTHHHHHHHHHTTCCHHHHHHCEEEC--CSSHHHHH
T ss_pred CCCCceE---hHhhHHHh---------CCeEEEEecCCC-C-cCCHHHHHHHHHHHHHHHhcCCCeEEEe--CCCcHHHH
Confidence 8999999 88887665 469999999998 6 79999999999987654 3455789986 56999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+++|++|+||||...+.. +..+++.||+ |+.+++. ++++.+.. +++
T Consensus 89 lA~~a~~~G~~~~iv~p~~~~~~---k~~~~~~~GA~V~~~~~~-~~~~~~~a----~~l-------------------- 140 (323)
T 1v71_A 89 IALSAKILGIPAKIIMPLDAPEA---KVAATKGYGGQVIMYDRY-KDDREKMA----KEI-------------------- 140 (323)
T ss_dssp HHHHHHHTTCCEEEEEETTCCHH---HHHHHHHTTCEEEEECTT-TTCHHHHH----HHH--------------------
T ss_pred HHHHHHHcCCCEEEECCCCCcHH---HHHHHHHcCCEEEEECCC-HHHHHHHH----HHH--------------------
Confidence 99999999999999999887643 5567899998 9999875 44433221 111
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
.+..+..| ++. +.||....||.+++.||++|+ +.+|+||+|+|||||++|++.++++
T Consensus 141 -----------------~~~~~~~~-i~~-~~n~~~~~g~~t~~~Ei~~q~----~~~d~vv~~vG~GGt~~Gi~~~~k~ 197 (323)
T 1v71_A 141 -----------------SEREGLTI-IPP-YDHPHVLAGQGTAAKELFEEV----GPLDALFVCLGGGGLLSGSALAARH 197 (323)
T ss_dssp -----------------HHHHTCBC-CCS-SSSHHHHHHHTHHHHHHHHHH----CCCSEEEEECSSSHHHHHHHHHHHH
T ss_pred -----------------HHhcCCEe-cCC-CCCcchhhhHhHHHHHHHHhc----CCCCEEEEecCCcHHHHHHHHHHHH
Confidence 11122333 433 478999999999999999996 2689999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHHHHHHH--HHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKNLISEF--KRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~ 394 (444)
+++.++|+||++++++....+...+..... ..++..+ +....++...+.+++++.++.|.|+|+|+++++++|++
T Consensus 198 ~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~t~a~g---l~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~ 274 (323)
T 1v71_A 198 FAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADG---AQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAA 274 (323)
T ss_dssp HCTTCEEEEEEEGGGCHHHHHHHHTSCCCCCCCCCSCTT---SCCSSCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEEeCCCchHHHHHHcCCceecCCCCccccc---ccCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHH
Confidence 999999999999987543322111100000 0001111 11111222344556778899999999999999999999
Q ss_pred HhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhhhh
Q 013383 395 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQ 442 (444)
Q Consensus 395 ~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~~~ 442 (444)
++||++||+| |+++++++++.++ + ++++||+|||||+++++.+.+
T Consensus 275 ~~gi~~eps~-a~alaa~~~~~~~-~-~~~~vv~i~tGg~~~~~~~~~ 319 (323)
T 1v71_A 275 RMKIVVEPTG-CLSFAAARAMKEK-L-KNKRIGIIISGGNVDIERYAH 319 (323)
T ss_dssp HTCCCCCGGG-GHHHHHHHHTGGG-G-TTCEEEEEECBCCCCHHHHHH
T ss_pred hcCeEEcHHH-HHHHHHHHHhHHh-c-CCCeEEEEeCCCCCCHHHHHH
Confidence 9999999985 8999999987643 4 689999999999999887653
No 10
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=100.00 E-value=1e-45 Score=374.60 Aligned_cols=292 Identities=16% Similarity=0.099 Sum_probs=221.2
Q ss_pred ccccccccccccccCCCCCccccc--cccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCe
Q 013383 66 IHQIKLFTTTEKHGGGPLGGISFL--NNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTD 143 (444)
Q Consensus 66 ~~~~~~~~~~~~~g~TPL~~~~~l--~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~ 143 (444)
.++++... |+|||++ + +++++.+ |.+||+|+|++| | +||||+|++.+++.+|.+.|.++
T Consensus 19 ~~~v~~~~-----g~TPL~~---~~~~~l~~~~---------g~~v~~K~E~~~-p-tgS~KdR~a~~~l~~a~~~g~~~ 79 (351)
T 3aey_A 19 TPVISLLE-----GSTPLIP---LKGPEEARKK---------GIRLYAKYEGLN-P-TGSFKDRGMTLAVSKAVEGGAQA 79 (351)
T ss_dssp SCCCCSCC-----CCCCEEE---CCCCHHHHTT---------TCEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCSE
T ss_pred CCceecCC-----CCCCeee---cCchhhHHHh---------CCeEEEEecCCC-C-cccHHHHHHHHHHHHHHhcCCCE
Confidence 45566655 9999999 8 7777654 468999999998 7 89999999999999999999999
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEecCC-CCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCC
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE-QPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNG 221 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~-~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g 221 (444)
||++ |+||||+|+|++|+.+|++|+||||+. .+. .+..+++.||+ |+.+++. |++..+. +++
T Consensus 80 vv~~--SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~---~k~~~~~~~GA~V~~v~~~-~~~~~~~----a~~------ 143 (351)
T 3aey_A 80 VACA--STGNTAASAAAYAARAGILAIVVLPAGYVAL---GKVAQSLVHGARIVQVEGN-FDDALRL----TQK------ 143 (351)
T ss_dssp EEES--CSSHHHHHHHHHHHHHTSEEEEEEETTCSCH---HHHHHHHHTTCEEEEEESC-HHHHHHH----HHH------
T ss_pred EEEe--CCCHHHHHHHHHHHHcCCCEEEEECCCCCCH---HHHHHHHHcCCEEEEECCC-HHHHHHH----HHH------
Confidence 9985 689999999999999999999999987 553 35668899998 9999874 6543222 111
Q ss_pred CccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeC
Q 013383 222 DVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDA 301 (444)
Q Consensus 222 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~v 301 (444)
+.+..+ .++++ + .||....||.+++.||++|+. ..||+||+|+
T Consensus 144 -------------------------------l~~~~~-~~~~~-~-~n~~~~~g~~t~~~Ei~~q~~---~~~d~vvvpv 186 (351)
T 3aey_A 144 -------------------------------LTEAFP-VALVN-S-VNPHRLEGQKTLAFEVVDELG---DAPHYHALPV 186 (351)
T ss_dssp -------------------------------HHHHSS-EEECS-T-TCHHHHHHHHHHHHHHHHHHS---SCCSEEEEEC
T ss_pred -------------------------------HHHhcC-cEecC-C-CCccceeeeeeHHHHHHHHcC---CCCCEEEEec
Confidence 111222 45554 3 789999999999999999972 2589999999
Q ss_pred CChhhHHHHHHHHHhcCC------CCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccC
Q 013383 302 GTGTTAVGLGLGAICLGL------PWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRP 375 (444)
Q Consensus 302 GtGgt~aGl~~~~~~~g~------~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 375 (444)
|||||++|++.++++.++ .++|+|||+.++............+.+++.++.+ .+......+.+++++.+
T Consensus 187 G~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~-----~~~~~~~~~~~~~~~~~ 261 (351)
T 3aey_A 187 GNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIG-----NPASWQGAVRAKEESGG 261 (351)
T ss_dssp SSSHHHHHHHHHHHHHHHHTSCSSCCEEEEEEEGGGCHHHHTSCCSSCCCSCGGGCCS-----SCTTHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHHHHHHhccccCCCCeEEEEecCCCChhhcCcccCCccchhHhhcCC-----CCCCHHHHHHHHHHhCC
Confidence 999999999999987642 6899999998865422110000000111111110 00000112234567788
Q ss_pred CeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCCc
Q 013383 376 RKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTL 435 (444)
Q Consensus 376 ~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~~ 435 (444)
..|.|+|+|++++++++++++||++||+ +|+++++++++.++ .+.++++||+|||||+.
T Consensus 262 ~~~~V~d~e~~~a~~~l~~~~gi~~eps-sa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~ 321 (351)
T 3aey_A 262 VIEAVTDEEILFAYRYLAREEGIFCEPA-SAAAMAGVFKLLREGRLEPESTVVLTLTGHGL 321 (351)
T ss_dssp EEEEECHHHHHHHHHHHHHHTCCCBCHH-HHHHHHHHHHHHHTTCSCTTCEEEEEECBBGG
T ss_pred eEEEECHHHHHHHHHHHHHhCCEEECch-HHHHHHHHHHHHHhcCCCCCCeEEEEECCCCC
Confidence 8999999999999999999999999998 89999999988754 35678999999999883
No 11
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.1e-45 Score=375.92 Aligned_cols=293 Identities=14% Similarity=0.098 Sum_probs=222.9
Q ss_pred ccccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEE
Q 013383 66 IHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLV 145 (444)
Q Consensus 66 ~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vv 145 (444)
.++++... |+|||++ ++++++.+ |.+||+|+|++| | +||||+|++.+++.+|.+.|.++||
T Consensus 29 ~~~v~~~~-----g~TPL~~---~~~l~~~~---------g~~i~~K~E~~~-p-tgSfKdR~a~~~l~~a~~~g~~~vv 89 (360)
T 2d1f_A 29 WTPVTLLE-----GGTPLIA---ATNLSKQT---------GCTIHLKVEGLN-P-TGSFKDRGMTMAVTDALAHGQRAVL 89 (360)
T ss_dssp CCCCCCCC-----CCCCEEE---CHHHHHHH---------SSEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCSEEE
T ss_pred CCcccccc-----CCCCCee---chhhHHHh---------CCeEEEEECCCC-C-CcCHHHHHHHHHHHHHHHCCCCEEE
Confidence 35566655 9999999 88887765 468999999998 7 8999999999999999999999999
Q ss_pred EeCcccchHHHHHHHHHHHhCCeEEEEecCC-CCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCc
Q 013383 146 TCGGCQSAHATAVAVSCAERGLKSHLLLRGE-QPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDV 223 (444)
Q Consensus 146 t~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~-~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~ 223 (444)
++ |+||||+|+|++|+++|++|+||||+. .+. .+..+++.||+ |+.+++. |++..+.. ++
T Consensus 90 ~a--SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~---~k~~~~~~~GA~v~~v~~~-~~~~~~~a----~~-------- 151 (360)
T 2d1f_A 90 CA--STGNTSASAAAYAARAGITCAVLIPQGKIAM---GKLAQAVMHGAKIIQIDGN-FDDCLELA----RK-------- 151 (360)
T ss_dssp EC--CSSHHHHHHHHHHHHHTCEEEEEECSSCCCH---HHHHHHHHTTCEEEEBSSC-HHHHHHHH----HH--------
T ss_pred Ee--CCcHHHHHHHHHHHHcCCcEEEEEcCCCCCH---HHHHHHHHcCCEEEEECCC-HHHHHHHH----HH--------
Confidence 86 689999999999999999999999987 553 35668899998 9999874 65433221 11
Q ss_pred cchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCC
Q 013383 224 VWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGT 303 (444)
Q Consensus 224 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGt 303 (444)
+.+..++.|+++. .||...+||.+++.||++|+. ..||+||+|+||
T Consensus 152 -----------------------------l~~~~~~~~~i~~--~n~~~~~g~~t~~~Ei~~q~~---~~~d~vvvpvG~ 197 (360)
T 2d1f_A 152 -----------------------------MAADFPTISLVNS--VNPVRIEGQKTAAFEIVDVLG---TAPDVHALPVGN 197 (360)
T ss_dssp -----------------------------HHHHCTTEEECST--TCHHHHHHHTHHHHHHHHHHS---SCCSEEEEECSS
T ss_pred -----------------------------HHHhcCCeEEcCC--CChhhhhhHHHHHHHHHHHcC---CCCCEEEEeCCc
Confidence 1122334666653 789999999999999999972 358999999999
Q ss_pred hhhHHHHHHHHHhcC------CCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCe
Q 013383 304 GTTAVGLGLGAICLG------LPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRK 377 (444)
Q Consensus 304 Ggt~aGl~~~~~~~g------~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~ 377 (444)
|||++|++.++++.. +.++|+|||++++............+.+++.++.+. +.. ....+.+++++.+..
T Consensus 198 GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~-~~~----~~~~~~~~~~~~~~~ 272 (360)
T 2d1f_A 198 AGNITAYWKGYTEYHQLGLIDKLPRMLGTQAAGAAPLVLGEPVSHPETIATAIRIGS-PAS----WTSAVEAQQQSKGRF 272 (360)
T ss_dssp SHHHHHHHHHHHHHHHTTSCSSCCEEEEEEEGGGCHHHHSSCCSSCCCSCGGGCCSS-CTT----HHHHHHHHHHHTCEE
T ss_pred hHHHHHHHHHHHHHHhccccccCceEEEEecCCCCHHhcCCccCCccchHHHhCCCC-CCc----HHHHHHHHHHhCCeE
Confidence 999999999998763 268999999988654221100000001111111110 000 011223466778889
Q ss_pred EEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCCc
Q 013383 378 FGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTL 435 (444)
Q Consensus 378 ~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~~ 435 (444)
+.|+|+|++++++++++++||++||+ +|+++++++++.++ .+.++++||+|||||+.
T Consensus 273 ~~V~d~e~~~a~~~l~~~eGi~~eps-sa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~ 330 (360)
T 2d1f_A 273 LAASDEEILAAYHLVARVEGVFVEPA-SAASIAGLLKAIDDGWVARGSTVVCTVTGNGL 330 (360)
T ss_dssp EEECHHHHHHHHHHHHHHHCCCBCHH-HHHHHHHHHHHHHHTSSCTTCEEEEEECBBGG
T ss_pred EEECHHHHHHHHHHHHHhcCeeECch-HHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCc
Confidence 99999999999999999999999998 89999999988764 35678999999999983
No 12
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=100.00 E-value=2.4e-45 Score=374.81 Aligned_cols=290 Identities=14% Similarity=0.090 Sum_probs=217.5
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAV 158 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~al 158 (444)
++|||++ ++++++.+ |.+||+|+|++| | +||||+|++.++|.++.+.|.++||+++ +||||+|+
T Consensus 45 ~~TPL~~---l~~l~~~~---------g~~i~~K~E~~~-p-tGSfKdRga~~~l~~a~~~g~~~vv~aS--sGN~g~al 108 (372)
T 1p5j_A 45 VKTPIRD---SMALSKMA---------GTSVYLKMDSAQ-P-SGSFKIRGIGHFCKRWAKQGCAHFVCSS--AGNAGMAA 108 (372)
T ss_dssp CCCCEEE---EHHHHHHH---------TSCEEEECGGGS-G-GGBTTHHHHHHHHHHHHHTTCCEEEECC--SSHHHHHH
T ss_pred CCCCceE---cHhhHHHh---------CCEEEEEEcCCC-C-CCChHHHHHHHHHHHHHHcCCCEEEEeC--CCHHHHHH
Confidence 8999999 88887665 468999999998 7 8999999999999999888999999874 49999999
Q ss_pred HHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhh
Q 013383 159 AVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQ 237 (444)
Q Consensus 159 A~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~ 237 (444)
|++|+++|++|+||||...+. .+..+++.||+ |+.+++ .|++..+. ++++
T Consensus 109 A~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~-~~~~a~~~----a~~l--------------------- 159 (372)
T 1p5j_A 109 AYAARQLGVPATIVVPGTTPA---LTIERLKNEGATCKVVGE-LLDEAFEL----AKAL--------------------- 159 (372)
T ss_dssp HHHHHHHTCCEEEEECTTCCH---HHHHHHHHTTCEEEECCS-CHHHHHHH----HHHH---------------------
T ss_pred HHHHHHcCCcEEEEECCCCCH---HHHHHHHhcCCEEEEECC-CHHHHHHH----HHHH---------------------
Confidence 999999999999999998754 35667899998 999886 46543322 1111
Q ss_pred hhhcccccccccccccccc-CCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 238 KSRASCLGQMDAHKGIDNC-RKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~-~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
.+. .+..|+.|+ .||...+|+.+++.||++|+ + ..||+||+|+|||||++|++.++++
T Consensus 160 ----------------~~~~~~~~~v~~~--~n~~~~~G~~t~~~Ei~~ql--~-~~~d~vvvpvG~GG~~~Gi~~~~k~ 218 (372)
T 1p5j_A 160 ----------------AKNNPGWVYIPPF--DDPLIWEGHASIVKELKETL--W-EKPGAIALSVGGGGLLCGVVQGLQE 218 (372)
T ss_dssp ----------------HHHSTTEEECCSS--CCHHHHHHHTHHHHHHHHHC--S-SCCSEEEEECSSSHHHHHHHHHHHH
T ss_pred ----------------HHhcCCcEEeCCC--CCHHHHhhHHHHHHHHHHHc--C-CCCCEEEEecCCchHHHHHHHHHHH
Confidence 111 122333344 48999999999999999995 2 2599999999999999999999999
Q ss_pred cC-CCCeEEEEeccCChhHHHHHHHHHHHHHH--HHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHH
Q 013383 317 LG-LPWEVTAIALVDTIDGYKQQEKNLISEFK--RLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIA 393 (444)
Q Consensus 317 ~g-~~~~vigV~~~~~~~~~~~~~~~l~~~~~--~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la 393 (444)
++ +.++|+||++++++........+....+. .++..+ +..+.++...+.+++.+.+..+.|+|+|+++++++++
T Consensus 219 ~~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~tia~g---l~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~ 295 (372)
T 1p5j_A 219 CGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKA---LGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFV 295 (372)
T ss_dssp TTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGG---GCCSSCCHHHHHHHHHSCEEEEEECHHHHHHHHHHHH
T ss_pred hCCCCceEEEEecCCChHHHHHHHcCCceecCCCceeecc---cCCCCCCHHHHHHHhhcCCEEEEECHHHHHHHHHHHH
Confidence 87 78999999998875432221110000000 001110 0111222234555666677789999999999999999
Q ss_pred HHhCCcccccccHHHHHHHHHH-----hhhc--CCCCCeEEEEEcCCC-ccch
Q 013383 394 QLTGILVDPVYTLAAWEMATLL-----SDEK--LKQDADVVMLHTGGT-LGMF 438 (444)
Q Consensus 394 ~~eGI~vEP~ysaaa~aal~~l-----~~~~--~~~g~~Vv~i~TGG~-~~l~ 438 (444)
+++||++||+ +|++++++++. .+.. +.++++||+|||||+ .+..
T Consensus 296 ~~eGi~~eps-sa~alaa~~~~~~~~l~~~g~~~~~~~~Vv~i~tgg~~~~~~ 347 (372)
T 1p5j_A 296 DDEKILVEPA-CGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLA 347 (372)
T ss_dssp HHTCCCCCHH-HHHHHHHHHTTHHHHHHHTTSSCSSCSCEEEECCBCSSCCHH
T ss_pred HHcCCeechh-HHHHHHHHHHhhHHHHhhccccCCCCCeEEEEECCCCCCCHH
Confidence 9999999998 78999998742 1111 456899999999997 6543
No 13
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.4e-45 Score=365.86 Aligned_cols=286 Identities=14% Similarity=0.076 Sum_probs=216.6
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAV 158 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~al 158 (444)
++|||++ ++++++.+ |.+||+|+|++| | +||||+|++.+++.++.+.|.++||+++ +||||+|+
T Consensus 6 ~~TPL~~---~~~l~~~~---------g~~v~~K~E~~~-p-tgS~K~R~a~~~l~~a~~~g~~~vv~~s--sGN~g~al 69 (318)
T 2rkb_A 6 VVTPLLE---SWALSQVA---------GMPVFLKCENVQ-P-SGSFKIRGIGHFCQEMAKKGCRHLVCSS--GGNAGIAA 69 (318)
T ss_dssp CCCCEEE---EHHHHHHH---------TSCEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCCEEEECC--CSHHHHHH
T ss_pred ccCCcee---hHhhHHHh---------CCeEEEEecCCC-C-CCCHHHHHHHHHHHHHHHcCCCEEEEEC--CchHHHHH
Confidence 7999999 88887665 468999999998 7 7999999999999999999999999874 49999999
Q ss_pred HHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhh
Q 013383 159 AVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQ 237 (444)
Q Consensus 159 A~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~ 237 (444)
|++|+++|++|+||||...+. .+..+++.||+ |+.+++ .|++..+. +++
T Consensus 70 A~~a~~~G~~~~i~~p~~~~~---~k~~~~~~~Ga~V~~~~~-~~~~~~~~----a~~---------------------- 119 (318)
T 2rkb_A 70 AYAARKLGIPATIVLPESTSL---QVVQRLQGEGAEVQLTGK-VWDEANLR----AQE---------------------- 119 (318)
T ss_dssp HHHHHHHTCCEEEEECTTCCH---HHHHHHHHTTCEEEECCS-SHHHHHHH----HHH----------------------
T ss_pred HHHHHHcCCCEEEEECCCCcH---HHHHHHHhcCCEEEEECC-CHHHHHHH----HHH----------------------
Confidence 999999999999999988764 34567899998 999886 46543322 111
Q ss_pred hhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHhc
Q 013383 238 KSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICL 317 (444)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~~ 317 (444)
+.+..+..|+.|+ .||....|+.+++.||++|+ + ..||+||+|+|||||++|++.+++++
T Consensus 120 ---------------~~~~~~~~~~~~~--~n~~~~~g~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~Gi~~~~k~~ 179 (318)
T 2rkb_A 120 ---------------LAKRDGWENVPPF--DHPLIWKGHASLVQELKAVL--R-TPPGALVLAVGGGGLLAGVVAGLLEV 179 (318)
T ss_dssp ---------------HHHSTTEEECCSS--CSHHHHHHHHHHHHHHHHHS--S-SCCSEEEEECSSSHHHHHHHHHHHHH
T ss_pred ---------------HHHhcCCEEeCCC--CChhhccchhHHHHHHHHhc--C-CCCCEEEEeeCCCcHHHHHHHHHHHh
Confidence 1122233444444 68999999999999999995 3 25999999999999999999999988
Q ss_pred C-CCCeEEEEeccCChhHHHHHHHHHH------HHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHH
Q 013383 318 G-LPWEVTAIALVDTIDGYKQQEKNLI------SEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (444)
Q Consensus 318 g-~~~~vigV~~~~~~~~~~~~~~~l~------~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~ 390 (444)
+ +.++|+||++++++........+.. ..+++.++ .+.++...+.+.+.+.+..+.|+|+|++++++
T Consensus 180 ~~~~~~vi~ve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~-------~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~ 252 (318)
T 2rkb_A 180 GWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLG-------AKTVAARALECMQVCKIHSEVVEDTEAVSAVQ 252 (318)
T ss_dssp TCTTSCEEEEEETTBCHHHHHHHHTSCCBCSCCCSSCGGGC-------CSBCCHHHHHHHHHSCEEEEEECHHHHHHHHH
T ss_pred CCCCCEEEEEecCCChHHHHHHHcCCcccCCCCCceecccC-------CCCCCHHHHHHHHHcCCEEEEECHHHHHHHHH
Confidence 7 7799999999887543222111000 00111111 11122234455566667789999999999999
Q ss_pred HHHHHhCCcccccccHHHHHHHHHH----h-hhc--CCCCCeEEEEEcCCC-ccch
Q 013383 391 RIAQLTGILVDPVYTLAAWEMATLL----S-DEK--LKQDADVVMLHTGGT-LGMF 438 (444)
Q Consensus 391 ~la~~eGI~vEP~ysaaa~aal~~l----~-~~~--~~~g~~Vv~i~TGG~-~~l~ 438 (444)
++++++||++||+ +|++++++++. + +.. +.++++||+|||||+ .++.
T Consensus 253 ~l~~~~gi~~eps-~a~a~aa~~~~~~~~~~~~g~~~~~~~~vv~i~tgg~~~~~~ 307 (318)
T 2rkb_A 253 QLLDDERMLVEPA-CGAALAAIYSGLLRRLQAEGCLPPSLTSVVVIVCGGNNINSR 307 (318)
T ss_dssp HHHHHHCBCCCHH-HHHHHHHHHTSHHHHHHHTTSSCSSCSCEEEEECBCSSCCHH
T ss_pred HHHHhcCcEEchh-HHHHHHHHHHhhHHHHhhccccCCCCCeEEEEECCCCCCCHH
Confidence 9999999999997 68999987742 1 111 456899999999998 6543
No 14
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=100.00 E-value=2.7e-44 Score=371.82 Aligned_cols=278 Identities=14% Similarity=0.034 Sum_probs=213.0
Q ss_pred ccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC-----CeEEEeCcccc
Q 013383 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQS 152 (444)
Q Consensus 78 ~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~-----~~Vvt~G~s~G 152 (444)
.|+|||++ ++++++.+ |.+||+|+|++| | +||||+|++.+++.+|++.|. ++||++ |+|
T Consensus 121 ig~TPLv~---l~~Ls~~~---------g~~I~lK~E~ln-p-tGSfKdRgA~~~i~~A~~~G~l~~g~~~VV~a--SsG 184 (430)
T 4aec_A 121 IGKTPMVY---LNSIAKGC---------VANIAAKLEIME-P-CCSVKDRIGYSMVTDAEQKGFISPGKSVLVEP--TSG 184 (430)
T ss_dssp SSCCCEEE---CCGGGTTC---------SSEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTSCCTTTCEEEEE--CSS
T ss_pred CCCCCeEE---Chhhhhhc---------CCeEEEEECCCC-C-CCCHHHHHHHHHHHHHHHcCCCCCCCcEEEEE--CCC
Confidence 39999999 88887654 579999999999 6 789999999999999999987 678886 459
Q ss_pred hHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCc-chhhHHHHHHHHhhhhhcCCCCccchhhhH
Q 013383 153 AHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIF 230 (444)
Q Consensus 153 Nhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~ 230 (444)
|||+|+|++|+++|++|+||||+..+. .+..+++.||| |+.++++ .|+++.+. |++
T Consensus 185 NhG~AlA~aAa~~Gl~~~IvmP~~~s~---~k~~~~r~~GAeVv~v~~~~~~~~a~~~----a~e--------------- 242 (430)
T 4aec_A 185 NTGIGLAFIAASRGYRLILTMPASMSM---ERRVLLKAFGAELVLTDPAKGMTGAVQK----AEE--------------- 242 (430)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHH---------------
T ss_pred HHHHHHHHHHHHhCCEEEEEEcCCCCH---HHHHHHHHCCCEEEEECCCCChHHHHHH----HHH---------------
Confidence 999999999999999999999998764 35567899998 9999853 23322111 111
Q ss_pred HHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHH-HHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHH
Q 013383 231 EASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVG 309 (444)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~-~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aG 309 (444)
+.+..+..|+++ ++.||.. ..||.+++.||++|+ + ..||+||+|+|||||++|
T Consensus 243 ----------------------l~~~~~~~~~i~-~~~np~~~~aG~~T~a~EI~eQl--~-~~~D~vVvpvG~GGtlaG 296 (430)
T 4aec_A 243 ----------------------ILKNTPDAYMLQ-QFDNPANPKIHYETTGPEIWDDT--K-GKVDIFVAGIGTGGTITG 296 (430)
T ss_dssp ----------------------HHHHSTTEEECC-TTTCTHHHHHHHHTHHHHHHHHT--T-SCEEEEEEECSSSHHHHH
T ss_pred ----------------------HHHhcCCcEEec-CCCCccHHHHHHHHHHHHHHHHc--C-CCCCEEEEeCCccHHHHH
Confidence 112223455554 4467876 689999999999995 2 369999999999999999
Q ss_pred HHHHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHH
Q 013383 310 LGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEAC 389 (444)
Q Consensus 310 l~~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~ 389 (444)
++.++++.++.++|||||+++++... ... ......+.++.+ ..+..+..++.++.|.|+|+|+++++
T Consensus 297 i~~~lk~~~p~~kVigVep~~s~~l~-~g~--~~~~~i~Gl~~~----------~~p~~l~~~~vd~~v~Vsd~ea~~a~ 363 (430)
T 4aec_A 297 VGRFIKEKNPKTQVIGVEPTESDILS-GGK--PGPHKIQGIGAG----------FIPKNLDQKIMDEVIAISSEEAIETA 363 (430)
T ss_dssp HHHHHHHHCTTSEEEEEEEGGGCGGG-TCC--CCCCSCTTSCCS----------SCCTTCCTTTCSEEEEECHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEEEeCCCcHhh-CCC--ccceeehhccCC----------CCcHHHHHHhCCeEEEECHHHHHHHH
Confidence 99999999999999999998865321 110 000000111111 01223455677889999999999999
Q ss_pred HHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCC
Q 013383 390 HRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGG 433 (444)
Q Consensus 390 ~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG 433 (444)
+++++++||++||+ +|+++++++++.++...++++||+|+|++
T Consensus 364 r~La~~eGi~veps-sGaa~aAal~la~~~~~~g~~VV~Il~d~ 406 (430)
T 4aec_A 364 KQLALKEGLMVGIS-SGAAAAAAIKVAKRPENAGKLIAVVFPSF 406 (430)
T ss_dssp HHHHHHHCCCBCHH-HHHHHHHHHHHTTSGGGTTCEEEEEECBB
T ss_pred HHHHHHCCCEEehH-HHHHHHHHHHHHHhcCCCcCeEEEEECCC
Confidence 99999999999998 79999999988764323688999999864
No 15
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}
Probab=100.00 E-value=2.2e-45 Score=372.42 Aligned_cols=292 Identities=16% Similarity=0.091 Sum_probs=221.3
Q ss_pred ccccccccccccccCCCCCccccccccccccCCCccccCCCCe--EEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCe
Q 013383 66 IHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRC--FYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTD 143 (444)
Q Consensus 66 ~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~--l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~ 143 (444)
.+++++.. |+|||++ ++++++.+| .+ ||+|+|++| | +||||+|++.+++.+|.+.|.++
T Consensus 21 ~~~v~~~~-----g~TPL~~---~~~l~~~~g---------~~~~i~~K~E~~~-p-tGS~KdR~a~~~l~~a~~~g~~~ 81 (352)
T 2zsj_A 21 TPIVTLYE-----GNTPLIE---ADNLARAIG---------FKGKIYLKYEGLN-P-TGSFKDRGMTLAISKAVEAGKRA 81 (352)
T ss_dssp CCCCCCCC-----CCCCEEE---CHHHHHHHT---------CCSEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCCE
T ss_pred CCceeccc-----CCCCCee---hHHHHHHhC---------CCceEEEEECCCC-C-CccHHHHHHHHHHHHHHhcCCCE
Confidence 35566655 9999999 888876654 46 999999998 7 89999999999999999999999
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEecCC-CCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCC
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE-QPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNG 221 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~-~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g 221 (444)
||++ |+||||+|+|++|+++|++|+||||.. .+. .+..+++.||+ |+.+++. |+++.+.. ++
T Consensus 82 vv~~--SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~---~k~~~~~~~GA~v~~v~~~-~~~~~~~a----~~------ 145 (352)
T 2zsj_A 82 VICA--STGNTSASAAAYAARAGLRAYVLLPKGAVAI---GKLSQAMIYGAKVLAIQGT-FDDALNIV----RK------ 145 (352)
T ss_dssp EEEC--CSSHHHHHHHHHHHHHTCEEEEEEEGGGCCH---HHHHHHHHTTCEEEEESSC-HHHHHHHH----HH------
T ss_pred EEEe--CCchHHHHHHHHHHhcCCcEEEEECCCCCCH---HHHHHHHHcCCEEEEECCC-HHHHHHHH----HH------
Confidence 9986 689999999999999999999999986 553 35667899998 9999874 65433221 11
Q ss_pred CccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeC
Q 013383 222 DVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDA 301 (444)
Q Consensus 222 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~v 301 (444)
+.+..+ .|+++ + .||....||.+++.||++|+. ..||+||+|+
T Consensus 146 -------------------------------l~~~~~-~~~~~-~-~n~~~~~g~~t~~~Ei~~q~~---~~~d~vvvpv 188 (352)
T 2zsj_A 146 -------------------------------IGENFP-VEIVN-S-VNPYRIEGQKTAAFEICDTLG---EAPDYHFIPV 188 (352)
T ss_dssp -------------------------------HHHHSS-EEECS-T-TCTHHHHHHTHHHHHHHHHHS---SCCSEEEEEC
T ss_pred -------------------------------HHHHcC-cEECC-C-CCcchhhhHhHHHHHHHHHcC---CCCCEEEEeC
Confidence 111222 45554 3 789999999999999999972 2589999999
Q ss_pred CChhhHHHHHHHHHhcCC------CCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccC
Q 013383 302 GTGTTAVGLGLGAICLGL------PWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRP 375 (444)
Q Consensus 302 GtGgt~aGl~~~~~~~g~------~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 375 (444)
|||||++|++.++++..+ .++|+||++.++............+.+++.++.+. +.. ....+.+++++.+
T Consensus 189 G~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~-~~~----~~~~~~~~~~~~~ 263 (352)
T 2zsj_A 189 GNAGNITAYWKGFKIYYEEGKITKLPRMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGN-PYS----WKSALKAAQESGG 263 (352)
T ss_dssp SSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEETTBCHHHHTSCCSSCCCSCGGGCCSS-CTT----HHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCcHHhcCCccCCCcchhHHhcCCC-CCc----HHHHHHHHHHhCC
Confidence 999999999999987632 68999999998754221100000001111111110 000 0112234567788
Q ss_pred CeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCCc
Q 013383 376 RKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTL 435 (444)
Q Consensus 376 ~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~~ 435 (444)
..|.|+|+|++++++++++++||++||+ +|+++++++++.++ .+.++++||+|||||+.
T Consensus 264 ~~~~V~d~e~~~a~~~l~~~~gi~~eps-sa~alaa~~~~~~~~~~~~~~~vv~i~tg~~~ 323 (352)
T 2zsj_A 264 KIDAVSDSEILYAYKLIASTEGVFCEPA-SAASVAGLIKLVREGFFKGGEVVTCTLTGNGL 323 (352)
T ss_dssp EEEEECHHHHHHHHHHHHHHHCCCBCHH-HHHHHHHHHHHHHTTCCCSCCEEEEEECBBGG
T ss_pred eEEEECHHHHHHHHHHHHHhCCeeECch-HHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCc
Confidence 8999999999999999999999999998 89999999988764 35678999999999983
No 16
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=100.00 E-value=2.6e-44 Score=357.97 Aligned_cols=276 Identities=16% Similarity=0.071 Sum_probs=198.0
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC----CeEEEeCcccchH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~----~~Vvt~G~s~GNh 154 (444)
++|||++ ++++++.+ |.+||+|+|++| | +||||+|++.+++.++.+.|. ++||+. |+|||
T Consensus 13 ~~TPL~~---l~~l~~~~---------g~~i~~K~E~~~-p-tgSfK~R~a~~~l~~a~~~g~~~~g~~vv~a--ssGN~ 76 (308)
T 2egu_A 13 GDTPAVK---LNRIVDED---------SADVYLKLEFMN-P-GSSVKDRIALAMIEAAEKAGKLKPGDTIVEP--TSGNT 76 (308)
T ss_dssp SCCCEEE---CCSSSCTT---------SCEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTCCCTTCEEEEE--CCHHH
T ss_pred CCCCeEE---CCcccccC---------CCEEEEEecccC-C-CCChHHHHHHHHHHHHHHcCCCCCCCEEEEe--CCCHH
Confidence 8999999 88887654 469999999997 7 899999999999999998887 678873 78999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCc-chhhHHHHHHHHhhhhhcCCCCccchhhhHHH
Q 013383 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (444)
Q Consensus 155 g~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~ 232 (444)
|+|+|++|+.+|++|+||||...+. .+..+++.||+ |+.++.. .|+++.+. ++++
T Consensus 77 g~a~A~~a~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~----a~~l---------------- 133 (308)
T 2egu_A 77 GIGLAMVAAAKGYKAVLVMPDTMSL---ERRNLLRAYGAELVLTPGAQGMRGAIAK----AEEL---------------- 133 (308)
T ss_dssp HHHHHHHHHHHTCEEEEEEESCSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHHH----------------
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCH---HHHHHHHHcCCEEEEECCCCCHHHHHHH----HHHH----------------
Confidence 9999999999999999999988754 35567899998 9999864 24432221 1111
Q ss_pred HHHhhhhhccccccccccccccccCCcEEEecCCCccHHHH-HHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHH
Q 013383 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (444)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~-~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~ 311 (444)
.+..+ ++++.++.||.+. .||.+++.||++|+. ..||+||+|+|||||++|++
T Consensus 134 ---------------------~~~~~--~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~---~~~d~vvvpvG~GG~~~Gi~ 187 (308)
T 2egu_A 134 ---------------------VREHG--YFMPQQFKNEANPEIHRLTTGKEIVEQMG---DQLDAFVAGVGTGGTITGAG 187 (308)
T ss_dssp ---------------------HHHHC--CBCC--------------CHHHHHHHHHT---TCCCEEEEEGGGTHHHHHHH
T ss_pred ---------------------HHHCc--CCcCCcCCChhHHHHHHHHHHHHHHHHcC---CCCCEEEEeeCCchhHHHHH
Confidence 11112 2456666788865 789999999999972 25999999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHH
Q 013383 312 LGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHR 391 (444)
Q Consensus 312 ~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~ 391 (444)
.+++++++.++|+||++++++... ..... ....+.++.+. .+..+.....++.+.|+|+|+++++++
T Consensus 188 ~~~k~~~~~~~vigve~~~~~~~~-~~~~~--~~~~~g~~~~~----------~~~~~~~~~~d~~~~v~d~e~~~a~~~ 254 (308)
T 2egu_A 188 KVLREAYPNIKIYAVEPADSPVLS-GGKPG--PHKIQGIGAGF----------VPDILDTSIYDGVITVTTEEAFAAARR 254 (308)
T ss_dssp HHHHHHCTTCEEEEEEECC------------------------------------CCCCCCSCSEEEEECHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEEEeCCCcccc-CCCCC--CcccCccCCCC----------CCHhHHHHhcCeEEEECHHHHHHHHHH
Confidence 999999999999999999874322 11111 01111122111 011233455677899999999999999
Q ss_pred HHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCC
Q 013383 392 IAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (444)
Q Consensus 392 la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~ 434 (444)
+++++||++|| |+|+++++++++.++. .++++||+|+||+.
T Consensus 255 l~~~~gi~~ep-ssa~a~aa~~~~~~~~-~~~~~vv~i~tg~g 295 (308)
T 2egu_A 255 AAREEGILGGI-SSGAAIHAALKVAKEL-GKGKKVLAIIPSNG 295 (308)
T ss_dssp HHHHHCCCBCH-HHHHHHHHHHHHHHHH-CTTCEEEEEECBBG
T ss_pred HHHHhCceEcH-HHHHHHHHHHHHHHhc-CCCCeEEEEECCCC
Confidence 99999999999 5899999999887644 46889999999975
No 17
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=100.00 E-value=1.3e-44 Score=363.06 Aligned_cols=277 Identities=13% Similarity=0.080 Sum_probs=213.1
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC----CeEEEeCcccchH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~----~~Vvt~G~s~GNh 154 (444)
|+|||++ ++++++.+-.+ ....+.+||+|+|++| | +||||+|++.+++.+|.+.|. ++||++ |+|||
T Consensus 14 g~TPL~~---~~~l~~~~~~~--~~~~g~~v~~K~E~~~-p-tGSfK~R~a~~~l~~a~~~g~l~~~~~vv~a--SsGN~ 84 (325)
T 3dwg_A 14 GNTPLVG---LQRLSPRWDDG--RDGPHVRLWAKLEDRN-P-TGSIKDRPAVRMIEQAEADGLLRPGATILEP--TSGNT 84 (325)
T ss_dssp SCCCEEE---CTTTSSBSSCB--TTBCCEEEEEEETTSS-T-TSBTTHHHHHHHHHHHHHTTCCCTTCEEEEE--CSSHH
T ss_pred CCCCcEE---ccccchhhccc--ccCCCcEEEEEECCCC-C-CCChHHHHHHHHHHHHHHcCCCCCCCEEEEe--CCcHH
Confidence 8999999 88887652000 0001579999999999 6 799999999999999999987 889986 56999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCc-chhhHHHHHHHHhhhhhcCCCCccchhhhHHH
Q 013383 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (444)
Q Consensus 155 g~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~ 232 (444)
|+|+|++|+++|++|+||||...+. .+..+++.||+ |+.++.. .|+++.+. ++++
T Consensus 85 g~alA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~----a~~l---------------- 141 (325)
T 3dwg_A 85 GISLAMAARLKGYRLICVMPENTSV---ERRQLLELYGAQIIFSAAEGGSNTAVAT----AKEL---------------- 141 (325)
T ss_dssp HHHHHHHHHHHTCEEEEEEESSSCH---HHHHHHHHHTCEEEEECSTTTHHHHHHH----HHHH----------------
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCH---HHHHHHHHCCCEEEEECCCCCHHHHHHH----HHHH----------------
Confidence 9999999999999999999998764 35567899998 9999863 34432221 1111
Q ss_pred HHHhhhhhccccccccccccccccCCcEEEecCCCccHHHH-HHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHH
Q 013383 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (444)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~-~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~ 311 (444)
.+..++.| ++.++.||... .||.+++.||++|+ + .||+||+|+|||||++|++
T Consensus 142 ---------------------~~~~~~~~-~~~~~~np~~~~~g~~t~~~Ei~~q~--~--~~d~vv~pvG~GG~~aGi~ 195 (325)
T 3dwg_A 142 ---------------------AATNPSWV-MLYQYGNPANTDSHYCGTGPELLADL--P--EITHFVAGLGTTGTLMGTG 195 (325)
T ss_dssp ---------------------HHHCTTSB-CCCTTTCHHHHHHHHHTHHHHHHHHC--T--TCCEEEEECSSSHHHHHHH
T ss_pred ---------------------HHhCCCeE-eCCCCCCHHHHHHHHHHHHHHHHHhc--C--CCCEEEEecCchHHHHHHH
Confidence 11222233 33445789887 69999999999995 2 4999999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHH
Q 013383 312 LGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHR 391 (444)
Q Consensus 312 ~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~ 391 (444)
.+++..++.++|+||++++++.. . .+ +.++.+.. +..+.+++.+..|.|+|+|+++++++
T Consensus 196 ~~~k~~~p~~~vigVe~~~~~~~-~-~~--------~~i~~~~~----------~~~~~~~~~d~~~~V~d~e~~~a~~~ 255 (325)
T 3dwg_A 196 RFLREHVANVKIVAAEPRYGEGV-Y-AL--------RNMDEGFV----------PELYDPEILTARYSVGAVDAVRRTRE 255 (325)
T ss_dssp HHHHHHSTTCEEEEEEEECCGGG-G-CC--------SSGGGCCC----------CTTCCGGGCSEEEEEEHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEEeeCCCcch-h-cc--------CcccCCcC----------cccccHhhCCeEEEECHHHHHHHHHH
Confidence 99999999999999999987542 1 10 11222211 11245567788999999999999999
Q ss_pred HHHHhCCcccccccHHHHHHHHHHhhhcCCCCCe--EEEEEcCCC
Q 013383 392 IAQLTGILVDPVYTLAAWEMATLLSDEKLKQDAD--VVMLHTGGT 434 (444)
Q Consensus 392 la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~--Vv~i~TGG~ 434 (444)
|++++||++||+ +|++++++++++++...++++ ||+|||||-
T Consensus 256 l~~~egi~~eps-sa~a~aa~~~~~~~~~~~g~~~~Vv~i~~g~g 299 (325)
T 3dwg_A 256 LVHTEGIFAGIS-TGAVLHAALGVGAGALAAGERADIALVVADAG 299 (325)
T ss_dssp HHHHHCCCBCHH-HHHHHHHHHHHHHHHHHHTCCEEEEEEECBBG
T ss_pred HHHHcCceechh-HHHHHHHHHHHHHHhccCCCCCeEEEEECCCC
Confidence 999999999998 799999999887543234677 999999965
No 18
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=100.00 E-value=6e-44 Score=354.78 Aligned_cols=271 Identities=16% Similarity=0.069 Sum_probs=211.4
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC----CeEEEeCcccchH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~----~~Vvt~G~s~GNh 154 (444)
|+|||++ ++++++.+ |.+||+|+|++| | +||||+|++.+++.++.+.|. ++||++ |+|||
T Consensus 9 ~~TPL~~---~~~l~~~~---------g~~v~~K~E~~~-p-tGSfK~R~a~~~i~~a~~~g~~~~g~~vv~~--ssGN~ 72 (303)
T 2v03_A 9 GNTPLVK---LQRMGPDN---------GSEVWLKLEGNN-P-AGSVKDRAALSMIVEAEKRGEIKPGDVLIEA--TSGNT 72 (303)
T ss_dssp SCCCEEE---CSSSSCSS---------SCEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTCCCTTCEEEEE--CSSHH
T ss_pred CCCCcEE---Cccccccc---------CCEEEEEeccCC-C-CCCcHHHHHHHHHHHHHHcCCCCCCCEEEEE--CCcHH
Confidence 8999999 88887654 469999999998 7 899999999999999988887 789987 46999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCc-chhhHHHHHHHHhhhhhcCCCCccchhhhHHH
Q 013383 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (444)
Q Consensus 155 g~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~ 232 (444)
|+|+|++|+++|++|+||||...+. .+..+++.||+ |+.++.. .|+++.+. |++
T Consensus 73 g~a~A~~a~~~G~~~~iv~p~~~~~---~k~~~~~~~Ga~v~~~~~~~~~~~~~~~----a~~----------------- 128 (303)
T 2v03_A 73 GIALAMIAALKGYRMKLLMPDNMSQ---ERRAAMRAYGAELILVTKEQGMEGARDL----ALE----------------- 128 (303)
T ss_dssp HHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECTTTHHHHHHHH----HHH-----------------
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCH---HHHHHHHHcCCEEEEECCCCCHHHHHHH----HHH-----------------
Confidence 9999999999999999999988664 35567899998 9999863 35432221 111
Q ss_pred HHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHH-HHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHH
Q 013383 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (444)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~-G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~ 311 (444)
+.+..+..|+. +..||.... ||.+++.||++|+ ++ .||+||+|+|||||++|++
T Consensus 129 --------------------~~~~~~~~~~~--~~~n~~~~~~g~~t~~~Ei~~q~--~~-~~d~vvvpvG~GG~~~Gi~ 183 (303)
T 2v03_A 129 --------------------MANRGEGKLLD--QFNNPDNPYAHYTTTGPEIWQQT--GG-RITHFVSSMGTTGTITGVS 183 (303)
T ss_dssp --------------------HHHTTSCEECC--TTTCTHHHHHHHHTHHHHHHHHT--TT-CCCEEEEECSSSHHHHHHH
T ss_pred --------------------HHHhCCCcccC--CcCChhhHHHhcCCcHHHHHHHh--CC-CCCEEEEEeCccHhHHHHH
Confidence 11121122333 346788765 7899999999996 22 5999999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHH
Q 013383 312 LGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHR 391 (444)
Q Consensus 312 ~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~ 391 (444)
.++++.++.++|+||++++++.... + +.++.+.. +..+...+.+..+.|+|+|+++++++
T Consensus 184 ~~~k~~~p~~~vigve~~~~~~~~~--~--------~gl~~~~~----------~~~~~~~~~d~~~~V~d~e~~~a~~~ 243 (303)
T 2v03_A 184 RFMREQSKPVTIVGLQPEEGSSIPG--I--------RRWPTEYL----------PGIFNASLVDEVLDIHQRDAENTMRE 243 (303)
T ss_dssp HHHHTSSSCCEEEEEEECTTCCCTT--C--------CCCCGGGC----------CTTCCGGGCSEEEEECHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEEcCCCCccccc--C--------CcCCCCCC----------CcccchHHCCEEEEECHHHHHHHHHH
Confidence 9999999999999999988753221 1 11121111 11233455677999999999999999
Q ss_pred HHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccc
Q 013383 392 IAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGM 437 (444)
Q Consensus 392 la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l 437 (444)
+++++||++||+ +|+++++++++.++ . ++++||+|||||+.-.
T Consensus 244 l~~~~gi~~~ps-sa~alaa~~~~~~~-~-~~~~vv~i~tg~~~ky 286 (303)
T 2v03_A 244 LAVREGIFCGVS-SGGAVAGALRVAAA-N-PDAVVVAIICDRGDRY 286 (303)
T ss_dssp HHHHHCCCBCHH-HHHHHHHHHHHHHH-S-TTCEEEEEECBBSGGG
T ss_pred HHHHcCceEcHH-HHHHHHHHHHHHHH-C-CCCeEEEEECCCCccc
Confidence 999999999998 79999999988654 3 6889999999998543
No 19
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=100.00 E-value=2.6e-44 Score=370.31 Aligned_cols=299 Identities=12% Similarity=0.054 Sum_probs=222.9
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHH--h----------------cC
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE--D----------------HI 140 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~--~----------------~g 140 (444)
++|||++ ++++++.+| ..+||+|+|++|+| +||||+|++.+++.++. + .+
T Consensus 43 ~~TPL~~---~~~l~~~~g--------~~~i~~K~E~~~~p-tgSfK~Rga~~~i~~~~~~~~G~~~~~l~~e~l~~~~~ 110 (398)
T 4d9i_A 43 RPTPLCA---LDDLANLFG--------VKKILVKDESKRFG-LNAFXMLGGAYAIAQLLCEKYHLDIETLSFEHLKNAIG 110 (398)
T ss_dssp CCCCEEE---CHHHHHHHT--------SSEEEEEEGGGSTT-TTBSTHHHHHHHHHHHHHHHHTCCGGGCCHHHHHHCCS
T ss_pred CCCCcee---hHHHHHHhC--------CCcEEEEECCCCCC-CCcchhhhhHHHHHHHHHHhhcccccccchhhhhhhcc
Confidence 7999999 888887764 15999999999867 89999999999998873 2 34
Q ss_pred CC-eEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhc
Q 013383 141 VT-DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAG 218 (444)
Q Consensus 141 ~~-~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~ 218 (444)
.+ +||+. |+||||+|+|++|+.+|++|+||||...+. .+..+++.||+ |+.|++ .|+++.+.. +++
T Consensus 111 ~~~~vv~a--SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~Vv~v~~-~~~~a~~~a----~~~-- 178 (398)
T 4d9i_A 111 EKMTFATT--TDGNHGRGVAWAAQQLGQNAVIYMPKGSAQ---ERVDAILNLGAECIVTDM-NYDDTVRLT----MQH-- 178 (398)
T ss_dssp CCCEEEEE--CSSHHHHHHHHHHHHHTCEEEEEECTTCCH---HHHHHHHTTTCEEEECSS-CHHHHHHHH----HHH--
T ss_pred CCCEEEEE--CCCHHHHHHHHHHHHcCCCEEEEEeCCCCH---HHHHHHHHcCCEEEEECC-CHHHHHHHH----HHH--
Confidence 56 88884 789999999999999999999999987754 35567899998 999987 466433221 111
Q ss_pred CCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecC----CCc--cHHHHHHHHHHHHHHHHhHHcCCC
Q 013383 219 NNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNE----GAG--DAVALLGVFRLLQYLSQDHLLGRK 292 (444)
Q Consensus 219 ~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~----g~~--np~~~~G~~t~~~Ei~~q~~~g~~ 292 (444)
.+.. ..|+++. ++. +|....||.+++.||++|+...+.
T Consensus 179 -----------------------------------~~~~-g~~~v~~~~~~g~~~~~~~~~~G~~t~~~Ei~~q~~~~g~ 222 (398)
T 4d9i_A 179 -----------------------------------AQQH-GWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGV 222 (398)
T ss_dssp -----------------------------------HHHH-TCEECCSSCBTTBCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -----------------------------------HHHc-CCEEecCcccCCcCCCCchhhhhHHHHHHHHHHHhhhcCC
Confidence 1112 2455553 333 377899999999999999842113
Q ss_pred CcCEEEEeCCChhhHHHHHHHHHhc--CCCCeEEEEeccCChhHHHHHHHH-H--HHHHHHHhccccccCCcccccccce
Q 013383 293 RAIKFVVDAGTGTTAVGLGLGAICL--GLPWEVTAIALVDTIDGYKQQEKN-L--ISEFKRLFGFLLKKSSLNEVDGEIV 367 (444)
Q Consensus 293 ~~d~vvv~vGtGgt~aGl~~~~~~~--g~~~~vigV~~~~~~~~~~~~~~~-l--~~~~~~~i~~~~~~~~~~~~~~~~~ 367 (444)
.||+||+|+|+|||++|++.+++++ .+.++|+|||+.+++....+...+ . ...-.++++.++ ....++...+
T Consensus 223 ~~d~vvvpvG~GG~~aGi~~~~k~~~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~tia~gl---~~~~p~~~~~ 299 (398)
T 4d9i_A 223 TPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMAGL---ACGEPNPLGW 299 (398)
T ss_dssp CCSEEEEECSSSHHHHHHHHHHHHHHCTTSCEEEEEEETTSCHHHHHHHHTSCCCC------CCTTC---CCSSCCHHHH
T ss_pred CCCEEEEecCccHHHHHHHHHHHHhcCCCCCEEEEEEeCCCchHHHHHHcCCceecCCCCCceeccc---cCCCCCHHHH
Confidence 5999999999999999999999765 467999999999876543322111 0 000112233221 1112223345
Q ss_pred eeeecccCCeEEecChHHHHHHHHHHHHhC----CcccccccHHHHHHHHHHh---------hh-cCCCCCeEEEEEcCC
Q 013383 368 HWVERCRPRKFGNVFEGEIEACHRIAQLTG----ILVDPVYTLAAWEMATLLS---------DE-KLKQDADVVMLHTGG 433 (444)
Q Consensus 368 ~l~~~~~~~~~~v~d~e~~~a~~~la~~eG----I~vEP~ysaaa~aal~~l~---------~~-~~~~g~~Vv~i~TGG 433 (444)
.+++++.++.|.|+|+|+++++++|++++| |++||+ +|++++++++++ ++ .+.++++||+|||||
T Consensus 300 ~~~~~~~d~~~~V~d~e~~~a~~~l~~~eG~~~~i~~eps-sa~alaa~~~~~~~~~~~~l~~~~~~~~~~~Vv~i~tGG 378 (398)
T 4d9i_A 300 EILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGES-GAVGLGVLAAVHYHPQRQSLMEKLALNKDAVVLVISTEG 378 (398)
T ss_dssp HHHHHHCCEEEEECTHHHHHHHHHHHSCSTTCCCCCCCHH-HHHHHHHHHHHHHSTTHHHHHHHTTCCTTCEEEEEECBC
T ss_pred HHHHHcCCeEEEECHHHHHHHHHHHHHhhCCCCcEEECch-HHHHHHHHHHhhhhhhhHHHHHhcCCCCCCEEEEEeCCC
Confidence 566788899999999999999999999999 999998 899999999873 22 366789999999999
Q ss_pred Cccchhhh
Q 013383 434 TLGMFGLA 441 (444)
Q Consensus 434 ~~~l~~~~ 441 (444)
+.++..+.
T Consensus 379 ~~d~~~~~ 386 (398)
T 4d9i_A 379 DTDVKHYR 386 (398)
T ss_dssp CSSHHHHH
T ss_pred CCCHHHHH
Confidence 99987664
No 20
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=100.00 E-value=1.2e-43 Score=354.44 Aligned_cols=282 Identities=15% Similarity=0.012 Sum_probs=212.4
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC----CeEEEeCcccchH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~----~~Vvt~G~s~GNh 154 (444)
++|||++ ++++ + + |.+||+|+|++| | +||||+|++.+++.+|.+.|. ++||++ |+|||
T Consensus 12 ~~TPL~~---l~~l-~-~---------g~~i~~K~E~~~-p-tGSfK~R~a~~~i~~a~~~g~~~~~~~vv~~--ssGN~ 73 (316)
T 1y7l_A 12 GNTPLVR---LKHF-G-H---------NGNVVVKIEGRN-P-SYSVKCRIGANMVWQAEKDGTLTKGKEIVDA--TSGNT 73 (316)
T ss_dssp CCCCEEE---CSSS-S-S---------TTCEEEEETTSS-G-GGBTHHHHHHHHHHHHHHTTSSCTTCEEEES--CCSHH
T ss_pred CCCCcEE---CccC-C-C---------CCEEEEEeccCC-C-CCChHHHHHHHHHHHHHHcCCCCCCCEEEEe--CCcHH
Confidence 8999999 8777 5 4 468999999997 7 899999999999999999887 688886 56999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCc-chhhHHHHHHHHhhhhhcCCCCccchhhhHHH
Q 013383 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (444)
Q Consensus 155 g~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~ 232 (444)
|+|+|++|+++|++|+||||...+. .+..+++.||+ |+.++.. .|+++.+. +++
T Consensus 74 g~a~A~~a~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~----a~~----------------- 129 (316)
T 1y7l_A 74 GIALAYVAAARGYKITLTMPETMSL---ERKRLLCGLGVNLVLTEGAKGMKGAIAK----AEE----------------- 129 (316)
T ss_dssp HHHHHHHHHHHTCCEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHH-----------------
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCH---HHHHHHHHcCCEEEEeCCCCCHHHHHHH----HHH-----------------
Confidence 9999999999999999999988654 35667899998 9999864 24432221 111
Q ss_pred HHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHH-HHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHH
Q 013383 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (444)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~-G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~ 311 (444)
+.+..+..|+++.++.||.... ||.+++.||++|+ + ..||+||+|+|||||++|++
T Consensus 130 --------------------~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~Gi~ 186 (316)
T 1y7l_A 130 --------------------IVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDT--D-GKVDVVVAGVGTGGSITGIS 186 (316)
T ss_dssp --------------------HHHHCTTTEECCCTTTCTHHHHHHHHTHHHHHHHHT--T-TCEEEEEEECSSSHHHHHHH
T ss_pred --------------------HHHhCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHc--C-CCCCEEEEeCCccccHHHHH
Confidence 1122233423334567888655 6899999999996 2 25999999999999999999
Q ss_pred HHHHhcC-CCCeEEEEeccCChhHHHHHHHH-HHHHHHHHhccccc-cCCcccccccceeeeecccCCeEEecChHHHHH
Q 013383 312 LGAICLG-LPWEVTAIALVDTIDGYKQQEKN-LISEFKRLFGFLLK-KSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEA 388 (444)
Q Consensus 312 ~~~~~~g-~~~~vigV~~~~~~~~~~~~~~~-l~~~~~~~i~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a 388 (444)
.++++++ +.++|+||++++++.... ...+ ... .+.... ++.. +..++.+.+.+.+..+.|+|+|++++
T Consensus 187 ~~~k~~~~~~~~vi~ve~~~~~~~~~-~~~g~~~~-----~~~~~~~gi~~---~~~~~~~~~~~~d~~~~V~d~e~~~a 257 (316)
T 1y7l_A 187 RAIKLDFGKQITSVAVEPVESPVISQ-TLAGEEVK-----PGPHKIQGIGA---GFIPKNLDLSIIDRVETVDSDTALAT 257 (316)
T ss_dssp HHHHHTSCCCCEEEEEEETTSCHHHH-HHHTCCCC-----CCCCSCTTSCC---SSCCTTCCGGGCCEEEEECHHHHHHH
T ss_pred HHHHHhCCCCCEEEEEecCCCccccc-cccCCccC-----CCCcccCcCCC---CCCCchhhHhhCCEEEEECHHHHHHH
Confidence 9999998 999999999998753221 1000 000 000000 0000 00122345566788999999999999
Q ss_pred HHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCc
Q 013383 389 CHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTL 435 (444)
Q Consensus 389 ~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~ 435 (444)
++++++++||++||+ +|+++++++++.++...++++||+|||||..
T Consensus 258 ~~~l~~~~gi~~eps-sa~~laa~~~~~~~~~~~~~~vv~i~tg~g~ 303 (316)
T 1y7l_A 258 ARRLMAEEGILAGIS-SGAAVAAADRLAKLPEFADKLIVVILPSASE 303 (316)
T ss_dssp HHHHHHHHCCCBCHH-HHHHHHHHHHHHTSGGGTTCEEEEEECBBCS
T ss_pred HHHHHHhhCCeEcHH-HHHHHHHHHHHHHhcCCCCCeEEEEECCCCc
Confidence 999999999999998 7999999998865433368899999999874
No 21
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=100.00 E-value=1.8e-43 Score=356.09 Aligned_cols=276 Identities=14% Similarity=0.053 Sum_probs=210.6
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC----CeE-EEeCcccch
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDL-VTCGGCQSA 153 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~----~~V-vt~G~s~GN 153 (444)
|+|||++ ++++ +.+ |.+||+|+|++| | +||||+|++.+++.+|.+.|. ++| |++ |+||
T Consensus 20 g~TPL~~---l~~l-~~~---------g~~i~~K~E~~~-p-tGSfK~R~a~~~i~~a~~~g~l~~g~~vvv~a--SsGN 82 (334)
T 3tbh_A 20 GQTPALY---LNKL-NNT---------KAKVVLKMECEN-P-MASVKDRLGFAIYDKAEKEGKLIPGKSIVVES--SSGN 82 (334)
T ss_dssp SCCCEEE---CCTT-CCS---------SSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEE--CSSH
T ss_pred CCCCeEE---CCcc-cCC---------CCEEEEEeCCCC-C-ccCcHHHHHHHHHHHHHHcCCCCCCCeEEEEe--CCCH
Confidence 8999999 8877 543 579999999999 6 799999999999999999987 674 876 4699
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCc-chhhHHHHHHHHhhhhhcCCCCccchhhhHH
Q 013383 154 HATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFE 231 (444)
Q Consensus 154 hg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~ 231 (444)
||+|+|++|+.+|++|+||||...+. .+..+++.||+ |+.++.. .|+++.+. +++
T Consensus 83 ~g~alA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~----a~~---------------- 139 (334)
T 3tbh_A 83 TGVSLAHLGAIRGYKVIITMPESMSL---ERRCLLRIFGAEVILTPAALGMKGAVAM----AKK---------------- 139 (334)
T ss_dssp HHHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHH----------------
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCH---HHHHHHHHCCCEEEEECCCCCchHHHHH----HHH----------------
Confidence 99999999999999999999998764 35567899998 9999864 23322111 111
Q ss_pred HHHHhhhhhccccccccccccccccCCcEEEecCCCccHH-HHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHH
Q 013383 232 ASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAV-ALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 310 (444)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~-~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl 310 (444)
+.+..+..|++ .+..||. ...||.+++.||++|+ + ..||+||+|+|||||++|+
T Consensus 140 ---------------------~~~~~~~~~~i-~~~~np~n~~~g~~t~~~Ei~~q~--~-~~~d~vv~pvG~GG~~aGi 194 (334)
T 3tbh_A 140 ---------------------IVAANPNAVLA-DQFATKYNALIHEETTGPEIWEQT--N-HNVDCFIAGVGTGGTLTGV 194 (334)
T ss_dssp ---------------------HHHHCTTEEEC-CTTTCHHHHHHHHHTHHHHHHHHT--T-SCCSEEEEECSSSHHHHHH
T ss_pred ---------------------HHHhCCCEEEC-CccCChhHHHHHHHHHHHHHHHHh--C-CCCCEEEeccCCcHhHHHH
Confidence 11122234444 3346787 4558889999999995 2 3799999999999999999
Q ss_pred HHHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHH
Q 013383 311 GLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (444)
Q Consensus 311 ~~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~ 390 (444)
+.+++..++.++|+|||+++++... ..... ....+.++.+ ..+..+.+++.++.|.|+|+|++++++
T Consensus 195 ~~~~k~~~p~~~vigVe~~~~~~~~-~g~~~--~~~~~gi~~~----------~~~~~~~~~~~d~~~~V~d~e~~~a~~ 261 (334)
T 3tbh_A 195 ARALKKMGSHARIVAVEPTESPVLS-GGKPG--PHKIQGIGPG----------FVPDVLDRSLIDEVLCVAGDDAIETAL 261 (334)
T ss_dssp HHHHHHTTCCCEEEEEEETTSCTTT-TCCCC--CCSCTTSCCS----------SCCTTCCGGGCSEEEEECHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEeeCCchHhh-CCCcC--CeecCCCCCC----------cCCHHHHHHhCCEEEEECHHHHHHHHH
Confidence 9999999999999999999875422 10000 0000111111 012245567788899999999999999
Q ss_pred HHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCC
Q 013383 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGG 433 (444)
Q Consensus 391 ~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG 433 (444)
+|++++||++||+ +|+++++++++.++.+.++++||+|||||
T Consensus 262 ~l~~~egi~~eps-sgaa~aa~~~~~~~~~~~g~~Vv~v~t~~ 303 (334)
T 3tbh_A 262 KLTRSDGVFCGFS-GGANVYAALKIAERPEMEGKTIVTVIPSF 303 (334)
T ss_dssp HHHHHHCCCBCHH-HHHHHHHHHHHHHSGGGTTCEEEEEECBB
T ss_pred HHHHHcCeEEcHH-HHHHHHHHHHHHHhccCCcCeEEEEECCC
Confidence 9999999999998 79999999988765445789999999974
No 22
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=100.00 E-value=3.7e-43 Score=349.01 Aligned_cols=277 Identities=14% Similarity=0.028 Sum_probs=214.2
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC----C--eEEEeCcccc
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----T--DLVTCGGCQS 152 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~----~--~Vvt~G~s~G 152 (444)
|+|||++ ++++++.+ |.+||+|+|++| | +||||+|++.+++.++.+.|. + +||+. |+|
T Consensus 8 ~~TPL~~---~~~l~~~~---------g~~v~~K~E~~~-p-tGSfK~R~a~~~l~~a~~~g~~~~g~~~~vv~a--ssG 71 (304)
T 1ve1_A 8 GKTPVVR---LAKVVEPD---------MAEVWVKLEGLN-P-GGSIKDRPAWYMIKDAEERGILRPGSGQVIVEP--TSG 71 (304)
T ss_dssp CCCCEEE---CCSSSCTT---------SCEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEES--CCS
T ss_pred CCCCcEE---Cccccccc---------CCEEEEEecccC-C-CCcHHHHHHHHHHHHHHHcCCCCCCCccEEEEe--CCc
Confidence 8999999 88887654 469999999998 7 899999999999999998886 6 78874 789
Q ss_pred hHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcc-hhhHHHHHHHHhhhhhcCCCCccchhhhH
Q 013383 153 AHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTH-YAHRIEMLKSYANLVAGNNGDVVWCNEIF 230 (444)
Q Consensus 153 Nhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~-~~~~~~~~~~~A~~~a~~~g~~~w~~~~~ 230 (444)
|||+|+|++|+++|++|+||||...+. .+..+++.||+ |+.++... |+++.+. +++
T Consensus 72 N~g~a~A~~a~~~G~~~~i~~p~~~~~---~k~~~~~~~Ga~V~~~~~~~~~~~~~~~----a~~--------------- 129 (304)
T 1ve1_A 72 NTGIGLAMIAASRGYRLILTMPAQMSE---ERKRVLKAFGAELVLTDPERRMLAAREE----ALR--------------- 129 (304)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEETTCCH---HHHHHHHHTTCEEEEECTTTHHHHHHHH----HHH---------------
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCH---HHHHHHHHcCCEEEEECCCCCHHHHHHH----HHH---------------
Confidence 999999999999999999999987654 35667899998 99998642 4432221 111
Q ss_pred HHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHH-HHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHH
Q 013383 231 EASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLG-VFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVG 309 (444)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G-~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aG 309 (444)
+.+. +.. +++.++.||....| |.+++.||++|+ + ..||+||+|+|||||++|
T Consensus 130 ----------------------l~~~-~~~-~~~~~~~n~~~~~g~~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~G 182 (304)
T 1ve1_A 130 ----------------------LKEE-LGA-FMPDQFKNPANVRAHYETTGPELYEAL--E-GRIDAFVYGSGTGGTITG 182 (304)
T ss_dssp ----------------------HHHH-HTC-BCCCTTTCHHHHHHHHHTHHHHHHHHT--T-TCCSEEEEECSSSHHHHH
T ss_pred ----------------------HHhc-CCC-EeCCCCCChhHHHHHHHHHHHHHHHHc--C-CCCCEEEEecCCchhHHH
Confidence 1111 122 34456789999999 599999999996 2 259999999999999999
Q ss_pred HHHHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHH
Q 013383 310 LGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEAC 389 (444)
Q Consensus 310 l~~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~ 389 (444)
++.+++++++.++|+||++++++... ...... . ..+.++.+ ..++.+.+.+.+..|.|+|+|+++++
T Consensus 183 i~~~~k~~~~~~~vi~ve~~~~~~~~-~g~~~~-~-~~~gl~~~----------~~~~~~~~~~~d~~~~V~d~e~~~a~ 249 (304)
T 1ve1_A 183 VGRYLKERIPHVKVIAVEPARSNVLS-GGKMGQ-H-GFQGMGPG----------FIPENLDLSLLDGVIQVWEEDAFPLA 249 (304)
T ss_dssp HHHHHHTTCTTCEEEEEEEGGGCTTT-TCCCCC-C-SCTTSCCS----------SCCTTCCGGGCSEEEEECHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEEecCCCcccc-CCCCCC-c-ccCCCCCC----------CCChhhhhhhCCEEEEECHHHHHHHH
Confidence 99999999999999999998864321 100000 0 00111110 01223455667889999999999999
Q ss_pred HHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCc
Q 013383 390 HRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTL 435 (444)
Q Consensus 390 ~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~ 435 (444)
+++++++||++||+ +|+++++++++.++ +.++++||+|||||..
T Consensus 250 ~~l~~~~gi~~eps-sa~a~aa~~~~~~~-~~~~~~vv~i~tg~g~ 293 (304)
T 1ve1_A 250 RRLAREEGLFLGMS-SGGIVWAALQVARE-LGPGKRVACISPDGGW 293 (304)
T ss_dssp HHHHHHHCCCBCHH-HHHHHHHHHHHHHH-HCTTCEEEEEECBBSG
T ss_pred HHHHHHhCcEEcHH-HHHHHHHHHHHHHh-cCCCCeEEEEECCCCc
Confidence 99999999999998 89999999988654 4468899999999864
No 23
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=100.00 E-value=2.9e-43 Score=355.79 Aligned_cols=286 Identities=12% Similarity=0.043 Sum_probs=217.9
Q ss_pred cccccccccccccCCCCCcccccccccc----ccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC-
Q 013383 67 HQIKLFTTTEKHGGGPLGGISFLNNTCP----FLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV- 141 (444)
Q Consensus 67 ~~~~~~~~~~~~g~TPL~~~~~l~~l~~----~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~- 141 (444)
+++.... |+|||++ ++++++ .+ |.+||+|+|++| | +||||+|++.+++.+|.+.|.
T Consensus 15 ~~i~~~~-----g~TPL~~---~~~l~~~~~~~~---------g~~v~~K~E~~~-p-tGSfKdR~a~~~l~~a~~~g~~ 75 (343)
T 2pqm_A 15 HNILETI-----GGTPLVE---LHGVTEHPRIKK---------GTRILVKLEYFN-P-MSSVKDRVGFNIVYQAIKDGRL 75 (343)
T ss_dssp SSGGGGS-----SCCCEEE---CCGGGCSTTSCT---------TCEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHHTSS
T ss_pred HHHHhhc-----CCCCeEE---CCcccccccccc---------CcEEEEEeccCC-C-CCChHHHHHHHHHHHHHHcCCC
Confidence 4455544 8999999 888775 33 579999999998 6 899999999999999998887
Q ss_pred ---CeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCc-chhhHHHHHHHHhhhh
Q 013383 142 ---TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLV 216 (444)
Q Consensus 142 ---~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~~ 216 (444)
++||++ |+||||+|+|++|+.+|++|+||||...+. .+..+++.||+ |+.++.. .|+++.+. +++
T Consensus 76 ~~g~~vv~a--SsGN~g~alA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~----a~~- 145 (343)
T 2pqm_A 76 KPGMEIIES--TSGNTGIALCQAGAVFGYRVNIAMPSTMSV---ERQMIMKAFGAELILTEGKKGMPGAIEE----VNK- 145 (343)
T ss_dssp CTTCEEEEE--CSSHHHHHHHHHHHHHTCCEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHH-
T ss_pred CCCCEEEEE--CCcHHHHHHHHHHHHcCCCEEEEECCCCCH---HHHHHHHHCCCEEEEECCCCCHHHHHHH----HHH-
Confidence 689887 459999999999999999999999988654 35667899998 9999864 24432221 111
Q ss_pred hcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHH-HHHHHHHHHHHHhHHcCCCCcC
Q 013383 217 AGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAI 295 (444)
Q Consensus 217 a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~-~G~~t~~~Ei~~q~~~g~~~~d 295 (444)
+.+..+..|+++.++.||... .||.+++ ||++|+ + ..||
T Consensus 146 ------------------------------------~~~~~~~~y~~~~~~~n~~n~~~g~~t~~-Ei~~q~--~-~~~d 185 (343)
T 2pqm_A 146 ------------------------------------MIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDT--D-GEVD 185 (343)
T ss_dssp ------------------------------------HHHHSTTTEEECCTTTCHHHHHHHHHHHH-HHHHHT--T-TCEE
T ss_pred ------------------------------------HHHhCCCcEEECCCCCChhHHHHHHHHHH-HHHHHc--C-CCCC
Confidence 112223455566677788865 7899999 999996 2 2699
Q ss_pred EEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccC
Q 013383 296 KFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRP 375 (444)
Q Consensus 296 ~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 375 (444)
+||+|+|||||++|++.+++++++.++|+||++++++... ..... ....+.++.+ ..++.+.+.+.+
T Consensus 186 ~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~-~~~~~--~~~~~gl~~~----------~~~~~~~~~~~d 252 (343)
T 2pqm_A 186 IVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLE-GKAKG--PHGIQGIGAG----------FIPDIYKKEFVD 252 (343)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCTTT-TCCCC--CCCCTTCCCS----------SCCTTCCGGGCC
T ss_pred EEEEecCCchhHHHHHHHHHHcCCCCEEEEEecCCCcccc-cCCCC--CeecCccCCC----------CCCHHHHHHhCC
Confidence 9999999999999999999999999999999998864322 10000 0000111110 012234566778
Q ss_pred CeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCc
Q 013383 376 RKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTL 435 (444)
Q Consensus 376 ~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~ 435 (444)
..+.|+|+|++++++++++++||++||+ +|+++++++++.++...++++||+|+|||..
T Consensus 253 ~~~~Vsd~e~~~a~~~l~~~~gi~~eps-sa~alaa~~~~~~~~~~~~~~vv~i~tg~g~ 311 (343)
T 2pqm_A 253 EIIPIKTQDAWKMARAVVKYDGIMCGMS-SGAAILAGLKEAEKPENEGKTIVIIVPSCGE 311 (343)
T ss_dssp EEEEECHHHHHHHHHHHHHHHCCCBCHH-HHHHHHHHHHHHTSGGGTTCEEEEEECBBGG
T ss_pred eEEEECHHHHHHHHHHHHHHhCCeEchh-HHHHHHHHHHHHHhcCCCCCeEEEEEcCCCc
Confidence 8999999999999999999999999998 7999999998765433368899999999874
No 24
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=100.00 E-value=1e-42 Score=347.22 Aligned_cols=278 Identities=16% Similarity=0.066 Sum_probs=209.8
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC----CeEEEeCcccchH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~----~~Vvt~G~s~GNh 154 (444)
++|||++ ++++++.+ +.+||+|+|++| | +||||+|++.+++.++.+.|. ++||+. |+|||
T Consensus 15 ~~TPL~~---~~~l~~~~---------g~~i~~K~E~~~-p-tgSfK~R~a~~~l~~a~~~g~~~~g~~vv~a--ssGN~ 78 (313)
T 2q3b_A 15 GRTPLVR---LRRVTDGA---------VADIVAKLEFFN-P-ANSVKDRIGVAMLQAAEQAGLIKPDTIILEP--TSGNT 78 (313)
T ss_dssp CCCCEEE---CSSSCTTC---------CSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTCCCTTCEEEEE--CSSHH
T ss_pred CCCceEE---Cccccccc---------CcEEEEEehhcC-C-CCcHHHHHHHHHHHHHHHcCCCCCCCEEEEe--CCCHH
Confidence 8999999 88877544 579999999998 7 899999999999999998887 678873 78999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCc-chhhHHHHHHHHhhhhhcCCCCccchhhhHHH
Q 013383 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (444)
Q Consensus 155 g~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~ 232 (444)
|+|+|++|+++|++|+||||...+. .+..+++.||+ |+.++.. .|+++.+. +++
T Consensus 79 g~alA~~a~~~G~~~~iv~p~~~~~---~k~~~~~~~Ga~v~~~~~~~~~~~~~~~----a~~----------------- 134 (313)
T 2q3b_A 79 GIALAMVCAARGYRCVLTMPETMSL---ERRMLLRAYGAELILTPGADGMSGAIAK----AEE----------------- 134 (313)
T ss_dssp HHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHH-----------------
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCH---HHHHHHHHCCCEEEEeCCCCCHHHHHHH----HHH-----------------
Confidence 9999999999999999999988754 35567899998 9999863 24432221 111
Q ss_pred HHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHH-HHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHH
Q 013383 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLG-VFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (444)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G-~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~ 311 (444)
+.+..+.. +++.++.||....| |.+++.||++|+ + ..||+||+|+|||||++|++
T Consensus 135 --------------------l~~~~~~~-~~~~~~~n~~~~~~~~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~Gi~ 190 (313)
T 2q3b_A 135 --------------------LAKTDQRY-FVPQQFENPANPAIHRVTTAEEVWRDT--D-GKVDIVVAGVGTGGTITGVA 190 (313)
T ss_dssp --------------------HHHHCTTE-ECCCTTTCTHHHHHHHHTHHHHHHHHT--T-TCCCEEEEECSSSHHHHHHH
T ss_pred --------------------HHHhCCCE-EeCCCCCChhhHHHHHHHHHHHHHHHc--C-CCCCEEEEccCcchhHHHHH
Confidence 11122222 45667788998765 899999999996 2 26999999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHH
Q 013383 312 LGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHR 391 (444)
Q Consensus 312 ~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~ 391 (444)
.+++++++.++|+||++++++... ...... ...+.++.+ ..+..+.....++.+.|+|+|+++++++
T Consensus 191 ~~~k~~~~~~~vi~ve~~~~~~~~-~~~~g~--~~~~g~~~~----------~~~~~~~~~~~d~~~~v~d~e~~~a~~~ 257 (313)
T 2q3b_A 191 QVIKERKPSARFVAVEPAASPVLS-GGQKGP--HPIQGIGAG----------FVPPVLDQDLVDEIITVGNEDALNVARR 257 (313)
T ss_dssp HHHHHHCTTCEEEEEEETTSCTTT-TCCCCC--CCCTTSCCS----------SCCTTCCGGGCCEEEEECHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEEeeCCCcccc-CCCCCC--cccCCcCCC----------CCChhhhHhhccEEEEECHHHHHHHHHH
Confidence 999999999999999999875321 100000 000001110 0112234456777899999999999999
Q ss_pred HHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCC
Q 013383 392 IAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (444)
Q Consensus 392 la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~ 434 (444)
+++++||++|| |+|+++++++++.++...++++||+|+|||.
T Consensus 258 l~~~~gi~~ep-ssa~alaa~~~~~~~~~~~~~~vv~v~~~~g 299 (313)
T 2q3b_A 258 LAREEGLLVGI-SSGAATVAALQVARRPENAGKLIVVVLPDFG 299 (313)
T ss_dssp HHHHHSCCBCH-HHHHHHHHHHHHHTCGGGTTCEEEEEECBBS
T ss_pred HHHHcCceEch-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 99999999999 5899999999886543125788886666543
No 25
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=100.00 E-value=1e-42 Score=348.55 Aligned_cols=279 Identities=15% Similarity=0.035 Sum_probs=211.9
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC-----CeEEEeCcccch
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQSA 153 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~-----~~Vvt~G~s~GN 153 (444)
++|||++ ++++++.+ +.+||+|+|++| | +||||+|++.+++.++.+.|. ++||+. |+||
T Consensus 14 ~~TPL~~---~~~l~~~~---------g~~v~~K~E~~~-p-tGSfK~R~a~~~l~~a~~~G~~~~~~~~vv~a--ssGN 77 (322)
T 1z7w_A 14 GNTPLVY---LNNVAEGC---------VGRVAAKLEMME-P-CSSVKDRIGFSMISDAEKKGLIKPGESVLIEP--TSGN 77 (322)
T ss_dssp SCCCEEE---CCGGGTTC---------SSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEE--CSSH
T ss_pred CCCCeEE---CccccccC---------CceEEEEecccC-C-CCchHHHHHHHHHHHHHHcCCCCCCCCEEEEe--CCCH
Confidence 8999999 88887643 469999999998 7 899999999999999999997 688875 6799
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCc-chhhHHHHHHHHhhhhhcCCCCccchhhhHH
Q 013383 154 HATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFE 231 (444)
Q Consensus 154 hg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~ 231 (444)
||+|+|++|+++|++|+||||...+. .+..+++.||+ |+.++.. .|+++.+. +++
T Consensus 78 ~g~alA~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~----a~~---------------- 134 (322)
T 1z7w_A 78 TGVGLAFTAAAKGYKLIITMPASMST---ERRIILLAFGVELVLTDPAKGMKGAIAK----AEE---------------- 134 (322)
T ss_dssp HHHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHH----------------
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCH---HHHHHHHHcCCEEEEeCCCCCHHHHHHH----HHH----------------
Confidence 99999999999999999999987654 35667899998 9998864 23332211 111
Q ss_pred HHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHH-HHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHH
Q 013383 232 ASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 310 (444)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~-~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl 310 (444)
+.+..++.|+++ +..||... .||.+++.||++|+ + ..||+||+|+|||||++|+
T Consensus 135 ---------------------~~~~~~~~~~i~-~~~n~~~~~~g~~t~~~Ei~~q~--~-~~~d~vvvpvG~GG~~~Gi 189 (322)
T 1z7w_A 135 ---------------------ILAKTPNGYMLQ-QFENPANPKIHYETTGPEIWKGT--G-GKIDGFVSGIGTGGTITGA 189 (322)
T ss_dssp ---------------------HHHHCTTEEECC-TTTCTHHHHHHHHTHHHHHHHHT--T-TCCCEEEEECSSSHHHHHH
T ss_pred ---------------------HHHhCCCeEeCC-CCCChhHHHHHHHHHHHHHHHHh--c-CCCCEEEEecCccHhHHHH
Confidence 112222455543 34566653 58899999999995 3 3699999999999999999
Q ss_pred HHHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHH
Q 013383 311 GLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH 390 (444)
Q Consensus 311 ~~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~ 390 (444)
+.+++++++.++|+||++++++... ..... ....+.++.+ ..++.+.+++.+..+.|+|+|++++++
T Consensus 190 ~~~~k~~~p~~~vigve~~~~~~~~-~~~~~--~~~~~gl~~~----------~~~~~~~~~~~~~~~~V~d~e~~~a~~ 256 (322)
T 1z7w_A 190 GKYLKEQNANVKLYGVEPVESAILS-GGKPG--PHKIQGIGAG----------FIPSVLNVDLIDEVVQVSSDESIDMAR 256 (322)
T ss_dssp HHHHHHHCTTCEEEEEEEGGGCGGG-TCCCC--CCSCTTSCCS----------SCCTTCCGGGCSEEEEECHHHHHHHHH
T ss_pred HHHHHHcCCCCEEEEEecCCCcccc-CCCCC--CcccCcCcCC----------CCChhhhHHhCCEEEEECHHHHHHHHH
Confidence 9999999999999999998864321 10000 0000111111 112235566778899999999999999
Q ss_pred HHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCc
Q 013383 391 RIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTL 435 (444)
Q Consensus 391 ~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~ 435 (444)
++++++||++||+ +|+++++++++.+....++++||+|||||..
T Consensus 257 ~l~~~~gi~~~ps-sga~~aaa~~~~~~~~~~~~~vv~i~tg~g~ 300 (322)
T 1z7w_A 257 QLALKEGLLVGIS-SGAAAAAAIKLAQRPENAGKLFVAIFPSFGE 300 (322)
T ss_dssp HHHHHHSCCBCHH-HHHHHHHHHHHHTSGGGTTCEEEEEECBBGG
T ss_pred HHHHHcCceEchh-HHHHHHHHHHHHHhcCCCCCeEEEEECCCCc
Confidence 9999999999998 7899999988765422357899999999863
No 26
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum}
Probab=100.00 E-value=4.3e-44 Score=364.86 Aligned_cols=292 Identities=13% Similarity=0.056 Sum_probs=220.9
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHH-hcCCCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLE-DHIVTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~-~~g~~~Vvt~G~s~GNhg~a 157 (444)
++|||++ ++++++.+ |.+||+|+|++| | +||||||.+.+++..+. +.+.++||+++ +||||+|
T Consensus 59 ~~TPL~~---l~~l~~~~---------g~~i~~K~E~~~-p-tgSfKdRga~~~i~~l~~~~~~~~vv~as--sGN~g~a 122 (366)
T 3iau_A 59 IESPLEL---AEKLSDRL---------GVNFYIKREDKQ-R-VFSFKLRGAYNMMSNLSREELDKGVITAS--AGNHAQG 122 (366)
T ss_dssp CCCCEEE---CHHHHHHH---------TSEEEEEEGGGS-T-TSBTTHHHHHHHHHTSCHHHHHHCEEEEC--SSHHHHH
T ss_pred CCCCcEE---hhhhhHhh---------CCEEEEEecCCC-C-CcchHHHHHHHHHHHHHHhCCCCEEEEeC--CCHHHHH
Confidence 8999999 98888776 469999999998 7 89999999999887753 33456799874 4999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+++|++|+||||...+.. +..+++.||+ |+.++. .|+++.+.. +++
T Consensus 123 ~A~aa~~~G~~~~iv~P~~~~~~---k~~~~~~~GA~V~~v~~-~~~~~~~~a----~~~-------------------- 174 (366)
T 3iau_A 123 VALAGQRLNCVAKIVMPTTTPQI---KIDAVRALGGDVVLYGK-TFDEAQTHA----LEL-------------------- 174 (366)
T ss_dssp HHHHHHHTTCCEEEEECTTCCHH---HHHHHHHTTCEEEECCS-SHHHHHHHH----HHH--------------------
T ss_pred HHHHHHHhCCceEEEeCCCCCHH---HHHHHHHCCCeEEEECc-CHHHHHHHH----HHH--------------------
Confidence 99999999999999999977643 4557899998 999985 466543321 111
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
.+..+..|+.|+ .||....|+.+++.||++|+ ..||+||+|+|||||++|++.+++.
T Consensus 175 -----------------~~~~~~~~i~~~--~n~~~i~g~~t~~~Ei~~q~----~~~d~vvvpvG~GG~~~Gi~~~~k~ 231 (366)
T 3iau_A 175 -----------------SEKDGLKYIPPF--DDPGVIKGQGTIGTEINRQL----KDIHAVFIPVGGGGLIAGVATFFKQ 231 (366)
T ss_dssp -----------------HHHHTCEECCSS--SSHHHHHHHHHHHHHHHHHC----CSEEEEEEECSSSHHHHHHHHHHHH
T ss_pred -----------------HHhcCCEecCCC--CChHHHHHHHHHHHHHHHhc----CCCCEEEEccCchHHHHHHHHHHHH
Confidence 111223444443 47888899999999999995 3799999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHHHHH--HHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKNLIS--EFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQ 394 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~l~~--~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~ 394 (444)
+++.++|+||++.++.........+... .-..++..+ +....++...+.+++++.++.|.|+|+|++++++++++
T Consensus 232 ~~~~~~vigVe~~~~~~l~~~~~~g~~~~~~~~~tia~g---l~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~ 308 (366)
T 3iau_A 232 IAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVDTFADG---VAVALVGEYTFAKCQELIDGMVLVANDGISAAIKDVYD 308 (366)
T ss_dssp HSTTSEEEEEEEGGGCHHHHHHHHTSCCEESCCCCSSGG---GCCSSCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHH
T ss_pred hCCCCeEEEEeecCChHHHHHHHcCCCCcCCCccchhhh---hcCCCCcHHHHHHHHhcCCCceeECHHHHHHHHHHHHH
Confidence 9999999999998875432221110000 000001111 11112233455667788899999999999999999999
Q ss_pred HhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccchhhh
Q 013383 395 LTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLA 441 (444)
Q Consensus 395 ~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~~~~ 441 (444)
++||++||+ +|++++++++++++...++++||+||||||+++..+.
T Consensus 309 ~~gi~~ep~-sa~alaa~~~~~~~~~~~g~~Vv~i~tGgn~d~~~l~ 354 (366)
T 3iau_A 309 EGRNILETS-GAVAIAGAAAYCEFYKIKNENIVAIASGANMDFSKLH 354 (366)
T ss_dssp HHSCCCCHH-HHHHHHHHHHHHHHTTCCSCEEEEEECBCCCCGGGHH
T ss_pred HcCcEEcHH-HHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCHHHHH
Confidence 999999998 8999999999876432248999999999999886543
No 27
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=100.00 E-value=3.7e-43 Score=366.13 Aligned_cols=298 Identities=13% Similarity=0.081 Sum_probs=219.8
Q ss_pred cCCCCCccccccccc----cccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHH-----HHhcCC--------
Q 013383 79 GGGPLGGISFLNNTC----PFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPL-----LEDHIV-------- 141 (444)
Q Consensus 79 g~TPL~~~~~l~~l~----~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~-----a~~~g~-------- 141 (444)
++|||++ +++++ +.+|. ..+.+||+|+|++| |.+||||+|++.+++.. |++.|.
T Consensus 77 ~~TPL~~---~~~l~~~l~~~~g~-----~~~~~v~lK~E~~~-p~tGSfK~Rga~~~i~~l~~~~a~~~G~l~~g~~~~ 147 (442)
T 3ss7_X 77 IESELVA---IPAMQKRLEKEYQQ-----PISGQLLLKKDSHL-PISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYS 147 (442)
T ss_dssp CCCCEEE---CHHHHHHHHHHHTC-----CCCSEEEEEEGGGC-TTTSBTHHHHHHHHHHHHHHHHHHHTTSCCTTSCGG
T ss_pred CCCCcEE---hHhhhhHHHHhhCC-----CcCCeEEEeecCCC-CCCCCcHHHHHHHHHHHHhHHHHHHcCCCCCCcchh
Confidence 8999999 77776 55541 01479999999999 54799999999988865 778886
Q ss_pred -------------CeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHH
Q 013383 142 -------------TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIE 207 (444)
Q Consensus 142 -------------~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~ 207 (444)
.+||+. |+||||+|+|++|+++|++|+||||.+.+. .+..+++.||+ |+.++. .|+++.+
T Consensus 148 ~l~~~~~r~~~~~~~vv~a--SsGNhg~avA~~aa~~G~~~~Ivmp~~~~~---~k~~~~r~~GA~Vv~v~~-~~~~a~~ 221 (442)
T 3ss7_X 148 KLLSPEFKQFFSQYSIAVG--STGNLGLSIGIMSARIGFKVTVHMSADARA---WKKAKLRSHGVTVVEYEQ-DYGVAVE 221 (442)
T ss_dssp GGGSHHHHHHHHTSEEEEE--CSSHHHHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEESS-CHHHHHH
T ss_pred hhhhhhhhhhccCcEEEEE--CCCHHHHHHHHHHHHhCCcEEEEECCCCCH---HHHHHHHHCCCEEEEECC-CHHHHHH
Confidence 367764 679999999999999999999999998764 35567899998 999987 4654322
Q ss_pred HHHHHhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhH
Q 013383 208 MLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDH 287 (444)
Q Consensus 208 ~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~ 287 (444)
. |.+ +.+..+..|+++. ..++....||.+++.||++|+
T Consensus 222 ~----a~~-------------------------------------~a~~~~~~~~i~~-~n~~~~~~G~~t~g~Ei~eQl 259 (442)
T 3ss7_X 222 E----GRK-------------------------------------AAQSDPNCFFIDD-ENSRTLFLGYSVAGQRLKAQF 259 (442)
T ss_dssp H----HHH-------------------------------------HHHTCTTEEECCT-TTCHHHHHHHHHHHHHHHHHH
T ss_pred H----HHH-------------------------------------HHHhCCCceeCCC-CChHHHHHHHHHHHHHHHHHH
Confidence 1 111 1122334676655 333567899999999999998
Q ss_pred H-cC----CCCcCEEEEeCCChhhHHHHHHHHHhc-CCCCeEEEEeccCChhHHHHHHHHH-----HHHH---HHHhccc
Q 013383 288 L-LG----RKRAIKFVVDAGTGTTAVGLGLGAICL-GLPWEVTAIALVDTIDGYKQQEKNL-----ISEF---KRLFGFL 353 (444)
Q Consensus 288 ~-~g----~~~~d~vvv~vGtGgt~aGl~~~~~~~-g~~~~vigV~~~~~~~~~~~~~~~l-----~~~~---~~~i~~~ 353 (444)
. .+ +..||+||+|+|+||+++|++.+++.+ ++.++|+|||+.+++..+.....+. +.++ .+++..
T Consensus 260 ~~~g~~vD~~~Pd~VvvpvG~GG~~aGi~~~lk~~~~~~v~vigVep~~~~~~~~~~~~G~~~~~~v~~~g~~~~TiAd- 338 (442)
T 3ss7_X 260 AQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAAD- 338 (442)
T ss_dssp HHHTCCCBTTBCEEEEEECSSSHHHHHHHHHHHHHHGGGEEEEEEEETTCCHHHHHHHHSCGGGCBGGGGTCCCCCSCG-
T ss_pred HhhcCcccccCCCEEEEEeCCchHHHHHHHHHHHhcCCCCEEEEEEeCCchHHHHHHhcCCCceeeeccCCCchhhHHh-
Confidence 4 22 235779999999999999999999986 8999999999999865333221110 0000 001111
Q ss_pred cccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-------cCCC----
Q 013383 354 LKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-------KLKQ---- 422 (444)
Q Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-------~~~~---- 422 (444)
++.++.+....+.+++++.++.|.|+|+|+++++++|++++||++||+ +|+++++++++++. .+.+
T Consensus 339 --gl~v~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~L~~~eGi~~eps-saaalAa~~~l~~~~~~~~~~~l~~~~~~ 415 (442)
T 3ss7_X 339 --GLAVGRASGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPS-ALAGMAGPQRVCASVSYQQMHGFSAEQLR 415 (442)
T ss_dssp --GGCCSBCCSSHHHHHGGGCCEEEEECHHHHHHHHHHHHHHHCCCCCGG-GGGGGGHHHHHHHCHHHHHHHTCCHHHHH
T ss_pred --hcCCCCCchhHHHHHHhhCCeEEEECHHHHHHHHHHHHHHCCCeEcHH-HHHHHHHHHHHHhchhhHHhcCCCcccCC
Confidence 112222233345567788899999999999999999999999999998 78999999988752 1222
Q ss_pred CCeEEEEEcCCCccc
Q 013383 423 DADVVMLHTGGTLGM 437 (444)
Q Consensus 423 g~~Vv~i~TGG~~~l 437 (444)
+++||+|||||+..-
T Consensus 416 ~~~vv~i~TGG~~~~ 430 (442)
T 3ss7_X 416 NTTHLVWATGGGMVP 430 (442)
T ss_dssp TCEEEEEECBCTTCC
T ss_pred CCeEEEEECCCCCCC
Confidence 789999999998654
No 28
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=100.00 E-value=7.1e-42 Score=345.76 Aligned_cols=278 Identities=13% Similarity=0.058 Sum_probs=205.7
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC-----CeEEEeCcccch
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV-----TDLVTCGGCQSA 153 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~-----~~Vvt~G~s~GN 153 (444)
|+|||++ +++|++.+ |++||+|+|++| | +||||+|.+.++|.+|.++|. ++||++ |+||
T Consensus 34 G~TPLv~---~~~Ls~~~---------G~~IylK~E~ln-p-tGSfK~RgA~~~i~~a~~~g~l~~g~~~Vv~a--SsGN 97 (344)
T 3vc3_A 34 GRTPLVY---LNKVTEGC---------GAYVAVKQEMMQ-P-TASIADRPAYAMITDAEEKNLITPGKTTLIEP--TSGN 97 (344)
T ss_dssp CCCCEEE---CCSTTTTC---------CSEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCCCTTTCEEEEE--CSSH
T ss_pred CCCceEE---Ccccchhh---------CCEEEEEecCCC-C-CCCcHHHHHHHHHHHHHHcCCCCCCCCEEEEe--CCcH
Confidence 7899999 99988765 579999999999 6 899999999999999988763 678875 5699
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHH
Q 013383 154 HATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (444)
Q Consensus 154 hg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~ 232 (444)
||+|+|++|+++|++|+||||..+|.. +..+++.||| |+.|+..... ......+ ++
T Consensus 98 ~g~alA~~aa~~G~~~~IvmP~~~~~~---k~~~~~~~GA~Vv~v~~~~~~-~~~~~~~-~~------------------ 154 (344)
T 3vc3_A 98 MGISMAFMAAMKGYKMVLTMPSYTSLE---RRVTMRAFGAELILTDPAKGM-GGTVKKA-YE------------------ 154 (344)
T ss_dssp HHHHHHHHHHHHTCEEEEEEETTSCHH---HHHHHHHTTCEEEEECGGGHH-HHHHHHH-HH------------------
T ss_pred HHHHHHHHHHHcCCcEEEEECCCChHH---HHHHHHHcCCEEEEECCCCcc-hHHHHHH-HH------------------
Confidence 999999999999999999999988764 4557899998 9999864211 1111110 00
Q ss_pred HHHhhhhhccccccccccccccccCCcEEEecCCCccHHHH-HHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHH
Q 013383 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVAL-LGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (444)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~-~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~ 311 (444)
+....+..+ .+.+..||..+ .|+.+++.||++|+ + +.||+||+|+||||+++|++
T Consensus 155 --------------------~~~~~~~~~-~~~~~~np~~~~a~~~t~g~EI~eq~--~-~~~d~vv~~vGgGG~~~Gi~ 210 (344)
T 3vc3_A 155 --------------------LLENTPNAH-MLQQFSNPANTQVHFETTGPEIWEDT--N-GQVDIFVMGIGSGGTVSGVG 210 (344)
T ss_dssp --------------------HHHHSTTEE-CCCTTTCHHHHHHHHHTHHHHHHHHT--T-TCCCEEEEECSSSHHHHHHH
T ss_pred --------------------HHhhccCce-eccccccchhHHHHHHHHHHHHHHHh--C-CCceEEEEecCCccchHHHh
Confidence 001122333 34455678654 56788999999995 3 47999999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHH
Q 013383 312 LGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHR 391 (444)
Q Consensus 312 ~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~ 391 (444)
.++++..|+++|+|||+.+++. +....... ..+ ..++.. . ....+.....+..+.++|+|+++++++
T Consensus 211 ~~~k~~~p~v~vigVep~~s~~-l~~~~~~~-~~i-~g~g~~-----~-----~~~~~~~~~~d~~v~v~d~eai~a~~~ 277 (344)
T 3vc3_A 211 QYLKSKNPNVKIYGVEPSESNV-LNGGKPGP-HHI-TGNGVG-----F-----KPDILDLDVMEKVLEVSSEDAVNMARV 277 (344)
T ss_dssp HHHHHHCTTCEEEEEEEGGGCG-GGTCCCCC-CSC-TTSCCS-----S-----CCTTCCGGGCSEEEEECHHHHHHHHHH
T ss_pred hhhHhhCCCceEEEEcCCCChh-hcCCCCCC-eeE-eccccc-----c-----cCcccchhhceEEEEECHHHHHHHHHH
Confidence 9999999999999999988643 21110000 000 001111 0 011123445667889999999999999
Q ss_pred HHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCC
Q 013383 392 IAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGG 433 (444)
Q Consensus 392 la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG 433 (444)
|++++||+++|+ +|+++++++++.+....++++||+|+|++
T Consensus 278 L~~~eGi~v~~s-sga~~~aAl~~a~~~~~~g~~VV~il~d~ 318 (344)
T 3vc3_A 278 LALKEGLMVGIS-SGANTVAALRLAQLPENKGKLIVTVHPSF 318 (344)
T ss_dssp HHHHHCCCBCHH-HHHHHHHHHHHHTSGGGTTCEEEEEECBB
T ss_pred HHHHCCCEEehh-HHHHHHHHHHHhccccCCCCEEEEEECCC
Confidence 999999999997 67888888777664445789999999874
No 29
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=100.00 E-value=6.4e-42 Score=340.19 Aligned_cols=274 Identities=15% Similarity=0.065 Sum_probs=209.5
Q ss_pred ccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC--CeEEEeCcccchHH
Q 013383 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV--TDLVTCGGCQSAHA 155 (444)
Q Consensus 78 ~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~--~~Vvt~G~s~GNhg 155 (444)
.++|||++ +++++ .+||+|+|++| | +||||+|++.+++.++++.|. ++||++ |+||||
T Consensus 18 ~~~TPL~~---l~~l~-------------~~v~~K~E~~~-p-tGSfK~R~a~~~l~~a~~~g~~~~~vv~a--SsGN~g 77 (303)
T 1o58_A 18 IGSTPIVR---LDSID-------------SRIFLKLEKNN-P-GGSVKDRPALFMILDAEKRGLLKNGIVEP--TSGNMG 77 (303)
T ss_dssp SCCCCEEE---CTTTC-------------TTEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHTTCCTTCEEEE--CSSHHH
T ss_pred cCCCCeEE---CccCC-------------ceEEEEecCCC-C-CCChHHHHHHHHHHHHHHcCCCCCCEEEE--CchHHH
Confidence 38999999 77764 37999999998 7 899999999999999988887 678864 779999
Q ss_pred HHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCc-chhhHHHHHHHHhhhhhcCCCCccchhhhHHHH
Q 013383 156 TAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEAS 233 (444)
Q Consensus 156 ~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~ 233 (444)
+|+|++|+++|++|+||||...+. .+..+++.||+ |+.+++. .|++..+. ++++
T Consensus 78 ~a~A~aa~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~----a~~~----------------- 133 (303)
T 1o58_A 78 IAIAMIGAKRGHRVILTMPETMSV---ERRKVLKMLGAELVLTPGELGMKGAVEK----ALEI----------------- 133 (303)
T ss_dssp HHHHHHHHHHTCCEEEEEETTSCH---HHHHHHHHTTCEEEEECGGGHHHHHHHH----HHHH-----------------
T ss_pred HHHHHHHHHcCCcEEEEECCCCCH---HHHHHHHHcCCEEEEECCCCCHHHHHHH----HHHH-----------------
Confidence 999999999999999999988654 35667899998 9999863 24432221 1111
Q ss_pred HHhhhhhccccccccccccccccCCcEEEecCCCccHHHHH-HHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHH
Q 013383 234 LTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALL-GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGL 312 (444)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~-G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~ 312 (444)
.+.. +.| ++.++.||.... ||.+++.||++|+ ++ .||+||+|+|+|||++|++.
T Consensus 134 --------------------~~~~-~~~-~~~~~~n~~~~~~g~~t~~~Ei~~q~--~~-~~d~vvvpvG~GG~~~Gi~~ 188 (303)
T 1o58_A 134 --------------------SRET-GAH-MLNQFENPYNVYSHQFTTGPEILKQM--DY-QIDAFVAGVGTGGTISGVGR 188 (303)
T ss_dssp --------------------HHHH-CCB-CCCTTTCHHHHHHHHHTHHHHHHHHT--TT-CCSEEEEECSSSHHHHHHHH
T ss_pred --------------------HHhc-CeE-eCCCCCCHHHHHHHHHHHHHHHHHHc--CC-CCCEEEEeeCCcccHHHHHH
Confidence 1111 233 345667888764 7899999999996 22 59999999999999999999
Q ss_pred HHHhcCCC-CeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHH
Q 013383 313 GAICLGLP-WEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHR 391 (444)
Q Consensus 313 ~~~~~g~~-~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~ 391 (444)
+++++++. ++|+||++++++.... .... ....+.++.+ ..++.+...+.+..+.|+|+|+++++++
T Consensus 189 ~~k~~~p~~~~vigve~~~~~~~~~-g~~~--~~~~~gi~~~----------~~~~~~~~~~~d~~~~V~d~e~~~a~~~ 255 (303)
T 1o58_A 189 VLKGFFGNGVKIVAVEPAKSPVLSG-GQPG--KHAIQGIGAG----------FVPKILDRSVIDEVITVEDEEAYEMARY 255 (303)
T ss_dssp HHHHHHGGGSEEEEEEETTSCTTTT-CCCC--CCCCTTSCCS----------SCCTTCCGGGCCEEEEECHHHHHHHHHH
T ss_pred HHHHhCCCCCEEEEEecCCCccccC-CCCC--CeecCcCCCC----------CcCHHHHHHhCCeEEEECHHHHHHHHHH
Confidence 99998888 9999999998743221 0000 0000111110 0112344566788999999999999999
Q ss_pred HHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCc
Q 013383 392 IAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTL 435 (444)
Q Consensus 392 la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~ 435 (444)
+++++||++||+ +|+++++++++.++ +.++++||+|+|||..
T Consensus 256 l~~~~gi~~eps-sa~alaa~~~~~~~-~~~~~~vv~i~tg~g~ 297 (303)
T 1o58_A 256 LAKKEGLLVGIS-SGANVAAALKVAQK-LGPDARVVTVAPDHAE 297 (303)
T ss_dssp HHHHHCCCBCHH-HHHHHHHHHHHHHT-SCTTCCEEEEECBBGG
T ss_pred HHHHcCceEcHH-HHHHHHHHHHHHHH-cCCCCEEEEEECCCCc
Confidence 999999999998 79999999987654 5568899999999863
No 30
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=8.3e-43 Score=361.25 Aligned_cols=335 Identities=15% Similarity=0.119 Sum_probs=231.1
Q ss_pred ecccchhhHHHHHHh--hhhcccCCC----ccccccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEe
Q 013383 40 NVRMSGEELLSRLLD--RKWALTSPD----SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVR 113 (444)
Q Consensus 40 ~~~~~~e~~~~~l~~--~~w~~~~~~----~~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKr 113 (444)
-..+-||.+++.+.+ ..+..-.++ ++++.+...+ ++.+|||++ ++++++.+| +.+||+||
T Consensus 34 gg~~~p~~~~~~~~~i~~A~~~~~~~~~~~~~~~~~~~~~---ig~~TPL~~---~~~Ls~~~g--------g~~i~lK~ 99 (418)
T 1x1q_A 34 GGRYVPETLIPALEELEAAYREAKKDPAFLEELDHYLRQF---AGRPTPLYH---AKRLSEYWG--------GAQVFLKR 99 (418)
T ss_dssp ECCCCCTTTHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT---TCCSCCEEE---CHHHHHHHT--------SSEEEEEE
T ss_pred CCEECCchhhhhHHHHHHHHHHHhhChHHHHHHHHhhhcc---cCCCCCcEE---hHHhHhhcC--------CceEEEEE
Confidence 345778888777765 233211111 3344443333 567899999 888887775 47999999
Q ss_pred CCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc
Q 013383 114 DDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK 193 (444)
Q Consensus 114 Edl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga 193 (444)
||+| | +||||+|++.+.+..++++|++++|++. |+||||+|+|++|+++|++|+||||...++.+..|+.+++.||+
T Consensus 100 E~l~-p-tGSfK~R~a~~~i~~a~~~g~~~vI~~~-ssGNhg~avA~aaa~~Gi~~~I~mp~~~~~~~~~kv~~~~~~GA 176 (418)
T 1x1q_A 100 EDLL-H-TGAHKINNTLGQALLARRMGKRRVIAET-GAGQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLLGA 176 (418)
T ss_dssp GGGS-G-GGBTTHHHHHHHHHHHHHHTCCEEEEEC-SSSHHHHHHHHHHHHHTCEEEEEEEHHHHHTCHHHHHHHHHTTC
T ss_pred ccCC-c-CccHHHHHHHHHHHHHHHcCCCEEEEec-CchHHHHHHHHHHHHcCCCEEEEECCCcchhhhHHHHHHHHCCC
Confidence 9999 6 8999999999998888888988888643 45899999999999999999999997544333456678899998
Q ss_pred -EEEeCC--cchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccC-CcEEEecCC-Cc
Q 013383 194 -VTYVPR--THYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCR-KKVLIVNEG-AG 268 (444)
Q Consensus 194 -V~~v~~--~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ip~g-~~ 268 (444)
|+.++. ..|+++.+. + .+ .| .+.. ...|+++.. ++
T Consensus 177 ~Vv~v~~~~~~~~~a~~~--a-~~---------~~----------------------------~~~~~~~~~i~~~~~n~ 216 (418)
T 1x1q_A 177 EVRPVAAGSRTLKDATNE--A-IR---------DW----------------------------ITNVRTTFYILGSVVGP 216 (418)
T ss_dssp EEEEECSTTSSHHHHHHH--H-HH---------HH----------------------------HHTTTTEEECCCCSSSS
T ss_pred EEEEECCCCCCHHHHHHH--H-HH---------HH----------------------------HHhCCCcEEEeCCccCC
Confidence 999985 245432211 0 00 01 1112 234444432 12
Q ss_pred cHH--HH-HHHHHHHHHHHHhHHc--CCCCcCEEEEeCCChhhHHHHHHHHHhc-CCCCeEEEEeccCCh----h---HH
Q 013383 269 DAV--AL-LGVFRLLQYLSQDHLL--GRKRAIKFVVDAGTGTTAVGLGLGAICL-GLPWEVTAIALVDTI----D---GY 335 (444)
Q Consensus 269 np~--~~-~G~~t~~~Ei~~q~~~--g~~~~d~vvv~vGtGgt~aGl~~~~~~~-g~~~~vigV~~~~~~----~---~~ 335 (444)
+|. .+ .|+.+++.||++|+.. + ..||+||+|+||||+++|++.+++.+ ++.+||+|||++++. . .+
T Consensus 217 ~p~~~~v~~gq~t~~~Ei~~Ql~~~~~-~~~D~vvvpvGgGG~~~Gi~~~~k~l~~p~~~vigVe~~g~~~~~~~~~~~l 295 (418)
T 1x1q_A 217 HPYPMMVRDFQSVIGEEVKRQSLELFG-RLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAASI 295 (418)
T ss_dssp TTHHHHHHHHHTHHHHHHHHHHHHHHS-SCCSEEEEECSSSSHHHHHHHHHHTSCTTCCEEEEEEECCTTSSSCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhcC-CCCCEEEEecCCcHhHHHHHHHHHHhCCCCCeEEEEecCCcccccHHHHHHH
Confidence 333 33 4888899999999731 3 35999999999999999999999887 789999999999862 1 11
Q ss_pred HHHHHH----------------H--HHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHHHhC
Q 013383 336 KQQEKN----------------L--ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTG 397 (444)
Q Consensus 336 ~~~~~~----------------l--~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~~eG 397 (444)
...... . .+.+++.++ .+.++...+.+.+...+..+.|+|+|+++++++|++++|
T Consensus 296 ~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~-------~~~~g~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eg 368 (418)
T 1x1q_A 296 GAGKRGVLHGSYMYLLYDHDGQITPAHSVSAGLD-------YPGVGPEHSYYADAGVAEYASVTDEEALEGFKLLARLEG 368 (418)
T ss_dssp HHTCEEEETTEEEEBCCC-----------------------CSBCCHHHHHHHHHTSEEEEEECHHHHHHHHHHHHHHHS
T ss_pred HcCCeeeeccccccccccccccccCCceeeeccC-------CCCCCHHHHHHHhccCeEEEEECHHHHHHHHHHHHHhcC
Confidence 111000 0 011211111 112222333445555677899999999999999999999
Q ss_pred CcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcC-CCccchhhh
Q 013383 398 ILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG-GTLGMFGLA 441 (444)
Q Consensus 398 I~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TG-G~~~l~~~~ 441 (444)
|+++|. +|+++++++++.++ +.++++||+|+|| |+.++..+.
T Consensus 369 i~~~~~-sa~a~a~a~~~~~~-~~~~~~Vv~vlsG~g~kd~~~~~ 411 (418)
T 1x1q_A 369 IIPALE-SAHAIAYAAKVVPE-MDKDQVVVINLSGRGDKDVTEVM 411 (418)
T ss_dssp CCBCHH-HHHHHHHHHHHTTT-SCTTCEEEEEECBBGGGTHHHHH
T ss_pred Ccccch-HHHHHHHHHHHHHh-cCCCCeEEEEECCCCCCCHHHHH
Confidence 999874 78999999887643 4578999999999 566665443
No 31
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=100.00 E-value=1.8e-42 Score=364.97 Aligned_cols=288 Identities=16% Similarity=0.133 Sum_probs=219.5
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHh-cCCCeEEEeCcccchHHHH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLED-HIVTDLVTCGGCQSAHATA 157 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~-~g~~~Vvt~G~s~GNhg~a 157 (444)
++|||++ ++++++.+ |.+||+|+||+| | +||||+|++.+++..+.+ .+.++||++ |+||||+|
T Consensus 30 ~~TPL~~---l~~Ls~~~---------g~~V~lK~E~lq-P-tgSfKdRgA~n~i~~l~~~~~~~gVV~a--SsGNhg~a 93 (514)
T 1tdj_A 30 QVTPLQK---MEKLSSRL---------DNVILVKREDRQ-P-VHSFKLRGAYAMMAGLTEEQKAHGVITA--SAGNHAQG 93 (514)
T ss_dssp CCCCEEE---CHHHHHHT---------TSEEEEECGGGS-T-TSSSTHHHHHHHHHTTTTSSCSSSCEEE--ECSSSHHH
T ss_pred CCCCcEE---chhhHHhh---------CCeEEEEECCCC-C-cccHHHHHHHHHHHHHHHhcCCCEEEEE--CCcHHHHH
Confidence 7999999 88887665 469999999998 7 899999999999988653 455789986 45999999
Q ss_pred HHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHh
Q 013383 158 VAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTA 236 (444)
Q Consensus 158 lA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~ 236 (444)
+|++|+++|++|+||||..+|.. +..+++.||+ |+.++. .|++..+. |.++
T Consensus 94 vA~aa~~lGi~~~IvmP~~~p~~---Kv~~~r~~GAeVvlv~~-~~dda~~~----a~el-------------------- 145 (514)
T 1tdj_A 94 VAFSSARLGVKALIVMPTATADI---KVDAVRGFGGEVLLHGA-NFDEAKAK----AIEL-------------------- 145 (514)
T ss_dssp HHHHHHHTTCCEEEECCSSCCHH---HHHHHHHHSCEEECCCS-SHHHHHHH----HHHH--------------------
T ss_pred HHHHHHHcCCcEEEEECCCCCHH---HHHHHHHCCCEEEEECC-CHHHHHHH----HHHH--------------------
Confidence 99999999999999999987643 4567899998 998886 46643322 2111
Q ss_pred hhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHh
Q 013383 237 QKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAIC 316 (444)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~ 316 (444)
.+..+..|+.|+ .||....|+.|++.||++|+ + .+|+||||+||||+++|++.+++.
T Consensus 146 -----------------a~e~g~~~v~pf--dnp~~iaGqgTig~EI~eQl--~--~~D~vvvpvGgGGliaGia~~lk~ 202 (514)
T 1tdj_A 146 -----------------SQQQGFTWVPPF--DHPMVIAGQGTLALELLQQD--A--HLDRVFVPVGGGGLAAGVAVLIKQ 202 (514)
T ss_dssp -----------------HHHHCCEECCSS--CCHHHHHHHHHHHHHHHHHC--T--TCCEEEEECSSSHHHHHHHHHHHH
T ss_pred -----------------HHhcCCEeeCCC--CCHHHHHHHHHHHHHHHHHC--C--CCCEEEEccCcHHHHHHHHHHHHH
Confidence 111223454444 37888889999999999996 2 499999999999999999999999
Q ss_pred cCCCCeEEEEeccCChhHHHHHHHHH-H--HHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHH
Q 013383 317 LGLPWEVTAIALVDTIDGYKQQEKNL-I--SEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIA 393 (444)
Q Consensus 317 ~g~~~~vigV~~~~~~~~~~~~~~~l-~--~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la 393 (444)
++|.+||+||++++++....+...+. . ..+ .++.+ ++.+..++...+.+++++.++.+.|+|+|+.+++++++
T Consensus 203 ~~P~~kVIgVep~~a~~l~~sl~~G~~~~l~~v-~tiad---Giav~~~g~~~~~l~~~~vd~~v~Vsd~ei~~ai~~L~ 278 (514)
T 1tdj_A 203 LMPQIKVIAVEAEDSACLKAALDAGHPVDLPRV-GLFAE---GVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLF 278 (514)
T ss_dssp HCTTCEEEEEEETTTCHHHHHHHHTSCCCCSCC-CSSSS---TTCCSSCCCHHHHHHTTSCCEEEEECHHHHHHHHHHHH
T ss_pred hCCCCEEEEEeccCChhHHHHHhcCCeeecCCc-ccccc---chhcCCCChHHHHHHHHhCCeEEEECHHHHHHHHHHHH
Confidence 99999999999988754332211100 0 000 00111 11222233445667788899999999999999999999
Q ss_pred HHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCccch
Q 013383 394 QLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMF 438 (444)
Q Consensus 394 ~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~~l~ 438 (444)
+++|+++||+ +|+++++++++.++...++++||+|+||||.+..
T Consensus 279 ~~~givvEPs-gA~alAal~~~~~~~~~~g~~VV~I~tGgn~d~~ 322 (514)
T 1tdj_A 279 EDVRAVAEPS-GALALAGMKKYIALHNIRGERLAHILSGANVNFH 322 (514)
T ss_dssp HHTCCCCCHH-HHHHHHHHHHHHHHHTCCSCEEEEECCCCCCCTT
T ss_pred HHcCeEEcHH-HHHHHHHHHHHHHhcCCCCCeEEEEEeCCCCCHH
Confidence 9999999998 7999999998765432268999999999998754
No 32
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A
Probab=100.00 E-value=9.5e-42 Score=353.57 Aligned_cols=338 Identities=14% Similarity=0.075 Sum_probs=220.4
Q ss_pred cccchhhHHHHHHh--hhhcccCCC----ccccccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeC
Q 013383 41 VRMSGEELLSRLLD--RKWALTSPD----SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRD 114 (444)
Q Consensus 41 ~~~~~e~~~~~l~~--~~w~~~~~~----~~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrE 114 (444)
..+-||++++.+.+ ..+....++ ++++.+...+ ++.+|||++ ++++++.+| +.+||+|||
T Consensus 39 g~~~pe~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~---~g~~TPL~~---~~~Ls~~~g--------g~~i~lK~E 104 (422)
T 2o2e_A 39 GRYVPEALMAVIEEVTAAYQKERVSQDFLDDLDRLQANY---AGRPSPLYE---ATRLSQHAG--------SARIFLKRE 104 (422)
T ss_dssp --CCCGGGHHHHHHHHHHHHHHHTSTHHHHHHHHHTTTT---SSCSCCEEE---CGGGGGGTT--------TCEEEEECG
T ss_pred CccCCHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh---CCCCCCeEE---ChhhHhhcC--------CCeEEEEEc
Confidence 45788998888876 344332233 3344443333 667899999 999988775 479999999
Q ss_pred CCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-
Q 013383 115 DLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK- 193 (444)
Q Consensus 115 dl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga- 193 (444)
|+| | +||||+|.+.+.+..|+++|++++|+.. |+||||+|+|++|+++|++|+||||...++.+..|+.+++.||+
T Consensus 105 ~ln-p-tGSfK~R~a~~~~~~a~~~g~~~vI~~~-ssGNhG~A~A~aaa~~G~~~~I~mp~~~~~~q~~kv~~~~~~GA~ 181 (422)
T 2o2e_A 105 DLN-H-TGSHKINNVLGQALLARRMGKTRVIAET-GAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAE 181 (422)
T ss_dssp GGC-C-SSTTHHHHHHHHHHHHHHTTCCEEEEEE-SSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHSHHHHHHHHHTTCE
T ss_pred CCC-C-CCcHHHHHHHHHHHHHHHcCCCeEEEec-CccHHHHHHHHHHHHcCCcEEEEeCCCcchhhHHHHHHHHHCCCE
Confidence 999 5 8999999998888888999988888632 45999999999999999999999997544333457778999998
Q ss_pred EEEeCCc--chhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCC-Ccc-
Q 013383 194 VTYVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEG-AGD- 269 (444)
Q Consensus 194 V~~v~~~--~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g-~~n- 269 (444)
|+.|+.+ .|++... ++ .+ .|. .+.....|+++.. +++
T Consensus 182 Vv~v~~~~~~~~da~~--~a-~~---------~~~---------------------------~~~~~~~yi~~s~~g~~p 222 (422)
T 2o2e_A 182 VVAVQTGSKTLKDAIN--EA-FR---------DWV---------------------------ANADNTYYCFGTAAGPHP 222 (422)
T ss_dssp EEEECSTTSCHHHHHH--HH-HH---------HHH---------------------------HHTTTEEECCCCSSSCCC
T ss_pred EEEECCCCCCHHHHHH--HH-HH---------HHH---------------------------hcCCCcEEEeCCccCCCC
Confidence 9999853 3443211 11 00 111 0112234444332 123
Q ss_pred -HHHHH-HHHHHHHHHHHhHH-cCCCCcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCCh-------hHHHHHH
Q 013383 270 -AVALL-GVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTI-------DGYKQQE 339 (444)
Q Consensus 270 -p~~~~-G~~t~~~Ei~~q~~-~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~-------~~~~~~~ 339 (444)
|..+. |+.+++.||.+|+. ..+..||+||+|+|+||+++|++.+++ .++.++|||||++++. ..+....
T Consensus 223 ~~~~v~~~q~t~g~Ei~~Ql~~~~~~~pD~vvvpvG~GG~~~Gi~~~~~-~~p~v~vigVe~~g~~~~~~~~~~~l~~g~ 301 (422)
T 2o2e_A 223 FPTMVRDFQRIIGMEARVQIQGQAGRLPDAVVACVGGGSNAIGIFHAFL-DDPGVRLVGFEAAGDGVETGRHAATFTAGS 301 (422)
T ss_dssp CHHHHHHHTTHHHHHHHHHHHHHSSSCCSEEEEEGGGHHHHHTTSGGGT-TCTTCEEEEEEECC----------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEccCCchhHHHHHHHHh-cCCCCeEEEEecCCCcccchhHHHHHHcCC
Confidence 33444 67778899999973 112369999999999999999988886 4789999999999851 1121111
Q ss_pred HHHHHHH--------------HHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHHHhCCccccccc
Q 013383 340 KNLISEF--------------KRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYT 405 (444)
Q Consensus 340 ~~l~~~~--------------~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ys 405 (444)
....++. ..++..++ ..+.++...+.+.+...+..+.|+|+|+++++++|++++||+++| ++
T Consensus 302 ~~~~~g~~~~~~~~~~g~~~~~~tia~gl---~~~~~g~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~~-es 377 (422)
T 2o2e_A 302 PGAFHGSFSYLLQDEDGQTIESHSISAGL---DYPGVGPEHAWLKEAGRVDYRPITDSEAMDAFGLLCRMEGIIPAI-ES 377 (422)
T ss_dssp ------------------------------------------------CCEEEEECHHHHHHHHHHHHHHHCCCCCH-HH
T ss_pred ceeccccchhhcccccccccCCceeeccc---CCCCCCHHHHHHHHhCCeeEEEECHHHHHHHHHHHHHHcCCccCc-hH
Confidence 1000000 01111111 111222233445556678889999999999999999999999976 57
Q ss_pred HHHHHHHHHHhhhcCCCCCeEEEEEcCCC-ccchhh
Q 013383 406 LAAWEMATLLSDEKLKQDADVVMLHTGGT-LGMFGL 440 (444)
Q Consensus 406 aaa~aal~~l~~~~~~~g~~Vv~i~TGG~-~~l~~~ 440 (444)
++++++++++.++ +.++++||+|+||++ .++..+
T Consensus 378 a~A~a~a~~l~~~-~~~~~~vvvilsG~g~kd~~~~ 412 (422)
T 2o2e_A 378 AHAVAGALKLGVE-LGRGAVIVVNLSGRGDKDVETA 412 (422)
T ss_dssp HHHHHHHHHHHHH-HCTTCEEEEECCSCSSSHHHHH
T ss_pred HHHHHHHHHHHHh-cCCCCEEEEEeCCCCCCCHHHH
Confidence 8999999887654 456889999999955 655443
No 33
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*
Probab=100.00 E-value=5e-41 Score=348.72 Aligned_cols=286 Identities=12% Similarity=0.083 Sum_probs=208.0
Q ss_pred ccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC----CeEEEeCcccch
Q 013383 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSA 153 (444)
Q Consensus 78 ~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~----~~Vvt~G~s~GN 153 (444)
-|+|||++ ++++++.+|. +++||+|+|++| | +||||+|++.+++.+|++.|. ++||++ |+||
T Consensus 106 ig~TPLv~---l~~Ls~~~G~-------~~~v~lK~E~~n-p-tGSfKdR~a~~~i~~a~~~G~l~~g~tVV~a--SsGN 171 (435)
T 1jbq_A 106 IGDTPMVR---INKIGKKFGL-------KCELLAKCEFFN-A-GGSVKDRISLRMIEDAERDGTLKPGDTIIEP--TSGN 171 (435)
T ss_dssp SSCCCEEE---CCSHHHHTTC-------CSEEEEEEGGGS-T-TSBTHHHHHHHHHHHHHHHTCSCTTCEEEEE--CSSH
T ss_pred CCCCCeEE---CcchhhHhCC-------CceEEEEECCCC-C-cCCHHHHHHHHHHHHHHHcCCCCCCCEEEEe--CCCH
Confidence 38999999 9888877653 469999999998 7 899999999999999998885 678875 5689
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCc-chhhHHHHHHHHhhhhhcCCCCccchhhhHH
Q 013383 154 HATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFE 231 (444)
Q Consensus 154 hg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~ 231 (444)
||+|+|++|+++|++|+||||...+. .+..+++.||+ |+.++.. .|++.+...+ .|
T Consensus 172 ~G~AlA~aaa~~Gi~~~IvmP~~~s~---~k~~~l~~~GAeVv~v~~~~~~d~~~~~~~-~a------------------ 229 (435)
T 1jbq_A 172 TGIGLALAAAVRGYRCIIVMPEKMSS---EKVDVLRALGAEIVRTPTNARFDSPESHVG-VA------------------ 229 (435)
T ss_dssp HHHHHHHHHHHHTCEEEEEECSCCCH---HHHHHHHHTTCEEEECCC-------CCHHH-HH------------------
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCCH---HHHHHHHhCCCEEEEecCCCCcchHHHHHH-HH------------------
Confidence 99999999999999999999988764 35567899998 9998853 3443211110 01
Q ss_pred HHHHhhhhhccccccccccccccccCCcEEEecCCCccHH-HHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHH
Q 013383 232 ASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAV-ALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL 310 (444)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~-~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl 310 (444)
.++.+..+..|+++ ++.||. ...||.+++.||++|+ + ..+|+||+|+|||||++|+
T Consensus 230 -------------------~~la~~~~~~~~i~-q~~n~~n~~ag~~t~a~EI~eQl--~-~~~D~vVvpvGtGGtlaGi 286 (435)
T 1jbq_A 230 -------------------WRLKNEIPNSHILD-QYRNASNPLAHYDTTADEILQQC--D-GKLDMLVASVGTGGTITGI 286 (435)
T ss_dssp -------------------HHHHHHSTTEECCC-TTTCTHHHHHHHHTHHHHHHHHH--T-TCCCEEEEECSSSHHHHHH
T ss_pred -------------------HHHHHhcCCeEEeC-ccCCcccHHHHHHHHHHHHHHHc--C-CCCCEEEEecCCcHhHHHH
Confidence 11222334566554 223343 2357889999999996 2 2689999999999999999
Q ss_pred HHHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhccccccCCcccccccce--eeeecccCCeEEecChHHHHH
Q 013383 311 GLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIV--HWVERCRPRKFGNVFEGEIEA 388 (444)
Q Consensus 311 ~~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~v~d~e~~~a 388 (444)
+.++++..+.++|+||++++++.......... . .. +.....+....+ .+.....+..|.|+|+|++++
T Consensus 287 ~~~lk~~~p~vrVigVep~gs~~~~~~~l~~~--~----~~----~~~~~gig~~~~~~~l~~~~vd~~~~Vsd~ea~~a 356 (435)
T 1jbq_A 287 ARKLKEKCPGCRIIGVDPEGSILAEPEELNQT--E----QT----TYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTF 356 (435)
T ss_dssp HHHHHHHCTTCEEEEEEETTCSCSSSGGGGCC--S----CC----CCSCCSCCCSSCCTTCCGGGCCEEEEECHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEecCCchhhchhhhhcC--C----Cc----ceeecccccCccchhhhhhhccceEEeCHHHHHHH
Confidence 99999999999999999988743110000000 0 00 000000111111 123355677899999999999
Q ss_pred HHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCC
Q 013383 389 CHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (444)
Q Consensus 389 ~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~ 434 (444)
+++|++++||++||+ +|+++++++++.++ +.++++||+|+||+.
T Consensus 357 ~r~La~~eGilve~s-sgaalaaa~~~~~~-~~~g~~VV~iltd~g 400 (435)
T 1jbq_A 357 ARMLIAQEGLLCGGS-AGSTVAVAVKAAQE-LQEGQRCVVILPDSV 400 (435)
T ss_dssp HHHHHHHSCCCBCHH-HHHHHHHHHHHGGG-CCTTCEEEEEECBBG
T ss_pred HHHHHHHcCCEEcHH-HHHHHHHHHHHHHH-cCCCCeEEEEEcCCc
Confidence 999999999999985 89999999988654 566899999999875
No 34
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B*
Probab=100.00 E-value=7.3e-42 Score=350.54 Aligned_cols=336 Identities=14% Similarity=0.046 Sum_probs=225.9
Q ss_pred ccchhhHHHHHHh--hhhcccCCCc----cccccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeCC
Q 013383 42 RMSGEELLSRLLD--RKWALTSPDS----KIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDD 115 (444)
Q Consensus 42 ~~~~e~~~~~l~~--~~w~~~~~~~----~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEd 115 (444)
.+-||+++..+.+ ..+..-.++. +++..... +++.+|||++ ++++++.+| +.+||+|+|+
T Consensus 9 ~~~p~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~---~ig~~TPL~~---~~~l~~~~g--------~~~i~~K~E~ 74 (388)
T 1v8z_A 9 QYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKT---WAGRPTPLYY---AKRLTEKIG--------GAKIYLKRED 74 (388)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TTCCSCCEEE---CHHHHHHHT--------SSEEEEEEGG
T ss_pred EeCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHH---hcCCCCCcee---hHhhHhhcC--------CceEEEEecc
Confidence 3457777765555 2332222222 23332222 2556799999 888887764 3799999999
Q ss_pred CCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-E
Q 013383 116 LLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-V 194 (444)
Q Consensus 116 l~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V 194 (444)
+| | +||||+|++.+++..++++|.++||+.. |+||||+|+|++|+++|++|+||||....+....|..+++.||+ |
T Consensus 75 ~~-p-tGSfK~R~a~~~i~~a~~~g~~~vv~~~-ssGN~g~a~A~aa~~~G~~~~iv~p~~~~~~~~~~~~~~~~~GA~V 151 (388)
T 1v8z_A 75 LV-H-GGAHKTNNAIGQALLAKFMGKTRLIAET-GAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANV 151 (388)
T ss_dssp GS-T-TSBTHHHHHHHHHHHHHHTTCCEEEEEE-SSSHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEE
T ss_pred CC-C-CCCHHHHHHHHHHHHHHHcCCCEEEEec-CchHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhHHHHHHHCCCEE
Confidence 98 7 8999999999999888889998888732 45899999999999999999999997532222245667899998 9
Q ss_pred EEeCCc--chhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCcc--H
Q 013383 195 TYVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGD--A 270 (444)
Q Consensus 195 ~~v~~~--~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~n--p 270 (444)
+.++.. .|++..+... + .+.+..++.++++.++.| |
T Consensus 152 ~~~~~~~~~~~~a~~~a~---~-------------------------------------~~~~~~~~~~~~~~~~~n~~p 191 (388)
T 1v8z_A 152 IPVNSGSRTLKDAINEAL---R-------------------------------------DWVATFEYTHYLIGSVVGPHP 191 (388)
T ss_dssp EEECSTTSSHHHHHHHHH---H-------------------------------------HHHHHTTTEEECCCSSCSSTT
T ss_pred EEECCCCCCHHHHHHHHH---H-------------------------------------HHHHhCCCceEecCCccCCCC
Confidence 999852 3443221100 0 001112234556555433 3
Q ss_pred H--HHH-HHHHHHHHHHHhHH-cCCCCcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHH
Q 013383 271 V--ALL-GVFRLLQYLSQDHL-LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEF 346 (444)
Q Consensus 271 ~--~~~-G~~t~~~Ei~~q~~-~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~ 346 (444)
. .+. |+.+++.||++|+. .....||+||+|+|||||++|++.+++ .++.++|+||+++++..........+..+.
T Consensus 192 ~~~~~~~~~~t~~~Ei~~q~~~~~~~~~d~vvvpvG~GG~~aGi~~~~~-~~~~~~vigve~~~~~~~~~~~~~~l~~g~ 270 (388)
T 1v8z_A 192 YPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV-NDKKVKLVGVEAGGKGLESGKHSASLNAGQ 270 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT-TCTTSEEEEEEEEETBGGGTBSCCHHHHCE
T ss_pred chhHHHHHhHHHHHHHHHHHHHhcCCCCCEEEEecCccHhHHHHHHHHh-hCCCceEEEEccCccccchhhhhHHHhcCC
Confidence 3 333 78889999999973 112358999999999999999999887 488999999999885321000000010000
Q ss_pred ---------------------HHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHHHhCCccccccc
Q 013383 347 ---------------------KRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYT 405 (444)
Q Consensus 347 ---------------------~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ys 405 (444)
.+++.. ++..+.++...+.+.+.+.+..|.|+|+|+++++++|++++||+++|. +
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~tia~---gl~~~~~g~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~~~-s 346 (388)
T 1v8z_A 271 VGVFHGMLSYFLQDEEGQIKPTHSIAP---GLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALE-S 346 (388)
T ss_dssp EEEETTEEEEECBCTTSCBCCCCCSST---TSCCSBCCHHHHHHHHTTSEEEEEEEHHHHHHHHHHHHHHHSCCBCHH-H
T ss_pred ceeccccccccccccccccCCCceeee---ccccCCCChhHHHHHhcCCcEEEEECHHHHHHHHHHHHHhcCCeeccc-H
Confidence 000000 001111222233445566678899999999999999999999999874 7
Q ss_pred HHHHHHHHHHhhhcCCCCCeEEEEEcCCC-ccchhh
Q 013383 406 LAAWEMATLLSDEKLKQDADVVMLHTGGT-LGMFGL 440 (444)
Q Consensus 406 aaa~aal~~l~~~~~~~g~~Vv~i~TGG~-~~l~~~ 440 (444)
|++++++.++.++ +.++++||+|+|||+ ..+..+
T Consensus 347 a~a~a~a~~l~~~-~~~~~~vv~i~tg~g~k~~~~~ 381 (388)
T 1v8z_A 347 AHAVAYAMKLAKE-MSRDEIIIVNLSGRGDKDLDIV 381 (388)
T ss_dssp HHHHHHHHHHHHT-SCTTCEEEEEECBBSGGGHHHH
T ss_pred HHHHHHHHHHHHh-cCCCCEEEEEECCCCccCHHHH
Confidence 8999999887654 557899999999976 455443
No 35
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Probab=100.00 E-value=6.3e-41 Score=343.65 Aligned_cols=302 Identities=12% Similarity=0.020 Sum_probs=216.6
Q ss_pred hhhHHHHHHh-hhhcccCCCc-cccccccccccccc--cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCC
Q 013383 45 GEELLSRLLD-RKWALTSPDS-KIHQIKLFTTTEKH--GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPL 120 (444)
Q Consensus 45 ~e~~~~~l~~-~~w~~~~~~~-~~~~~~~~~~~~~~--g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~ 120 (444)
||+++++|.+ ..|....++. .+..+. .+ ++ ++|||++ ++++++. |.+||+||||+| |+
T Consensus 61 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~---~g~~~~TPL~~---l~~Ls~~----------g~~IylK~E~ln-p~ 122 (389)
T 1wkv_A 61 GDGCSHTLEELGVFDISVPGEMVFPSPL-DF---FERGKPTPLVR---SRLQLPN----------GVRVWLKLEWYN-PF 122 (389)
T ss_dssp SSSCEEETTTTTTTCCCSCTTCEESSHH-HH---HHHSCSCCEEE---CCCCCST----------TEEEEEEEGGGS-TT
T ss_pred cHHHHHHHHHHHhHHHhcCChHHHHHHH-HH---hCCCCCCCeEE---ccccccC----------CCeEEEEEcCCC-CC
Confidence 6999999988 6686444443 333332 22 44 6899999 8888753 479999999998 54
Q ss_pred CcchhhHHHHhhHHH---HHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EE-
Q 013383 121 VNGNKARKMDALLPL---LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VT- 195 (444)
Q Consensus 121 ~ggnK~Rkl~~~l~~---a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~- 195 (444)
+||||+|++.+++.. ++++| ++||++ |+||||+|+|++|+++|++|+||||...+. .+..+++.||+ |+
T Consensus 123 tGS~K~R~a~~~i~~l~~a~~~g-~~Iv~a--ssGNhG~AlA~aaa~~Gl~~~ivmp~~~~~---~k~~~~~~~GAeVv~ 196 (389)
T 1wkv_A 123 SLSVKDRPAVEIISRLSRRVEKG-SLVADA--TSSNFGVALSAVARLYGYRARVYLPGAAEE---FGKLLPRLLGAQVIV 196 (389)
T ss_dssp TSBTTHHHHHHHHHHHTTTSCTT-CEEEEE--CCHHHHHHHHHHHHHTTCEEEEEEETTSCH---HHHHHHHHTTCEEEE
T ss_pred cCChHHHHHHHHHHHHHHHHhcC-CEEEEE--CCcHHHHHHHHHHHHcCCeEEEEECCCCCH---HHHHHHHHcCCEEEE
Confidence 689999999999988 76777 777754 679999999999999999999999987653 34567899998 88
Q ss_pred EeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHH-HH
Q 013383 196 YVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVA-LL 274 (444)
Q Consensus 196 ~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~-~~ 274 (444)
.++.+.+++.... |.+ | .+..+..|+.|+ .||.. ..
T Consensus 197 ~v~~~~~~da~~~----a~~---------~----------------------------~~~~g~~~~~p~--~N~~~~~~ 233 (389)
T 1wkv_A 197 DPEAPSTVHLLPR----VMK---------D----------------------------SKNEGFVHVNQF--YNDANFEA 233 (389)
T ss_dssp ETTCSSSGGGHHH----HHH---------H----------------------------HHHHCCEECCTT--TCHHHHHH
T ss_pred EcCCCCHHHHHHH----HHH---------H----------------------------HHccCcEecCcC--CChHHHHH
Confidence 7874456543221 111 1 011123343343 35544 44
Q ss_pred HHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCChhHHHHHHHHHHHHHHHHhcccc
Q 013383 275 GVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLL 354 (444)
Q Consensus 275 G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l~~~~~~~i~~~~ 354 (444)
|+.+++.||++|+...+..||+||+|+|||||++|++.+|+..++.++|+|||+.+... + . +...
T Consensus 234 ~~~t~g~Ei~~Q~~~~g~~~D~vv~~vG~GG~~~Gi~~~~k~~~p~vrvigVe~~~~~~-l--------~------Gi~~ 298 (389)
T 1wkv_A 234 HMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDS-I--------P------GIRR 298 (389)
T ss_dssp HHHTHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCC-C--------T------TCCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEecCCCCc-c--------c------cccc
Confidence 57778999999984222379999999999999999999999888999999999987532 1 0 0000
Q ss_pred ccCCcccccccceeeeecccC-CeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhc-CCCCCeEEEEEcC
Q 013383 355 KKSSLNEVDGEIVHWVERCRP-RKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK-LKQDADVVMLHTG 432 (444)
Q Consensus 355 ~~~~~~~~~~~~~~l~~~~~~-~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~-~~~g~~Vv~i~TG 432 (444)
++.. .. + +.....+ ..+.|+|+|+++++++|++++||++||+ ||+++++++++.++. +++ +++|+++||
T Consensus 299 i~~~-----~~-~-~~~~~~dg~~~~Vsd~ea~~a~~~l~~~eGi~~~ps-sa~alaa~~~l~~~g~~~~-~~vVviltg 369 (389)
T 1wkv_A 299 VETG-----ML-W-INMLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPS-GGAAVKALAKKAAEGDLEP-GDYVVVVPD 369 (389)
T ss_dssp GGGC-----CS-H-HHHSCCCCEEEEECHHHHHHHHHHHHHHHSCCBCHH-HHHHHHHHHHHHHTTCSCS-EEEEEEECB
T ss_pred cCCc-----ch-h-hhhheeccEEEEECHHHHHHHHHHHHHHcCCeEChH-HHHHHHHHHHHHHhcCCCC-CCEEEEEcC
Confidence 0000 01 0 1112233 6799999999999999999999999998 799999999887642 444 457789998
Q ss_pred -CCccc
Q 013383 433 -GTLGM 437 (444)
Q Consensus 433 -G~~~l 437 (444)
|...+
T Consensus 370 ~G~k~~ 375 (389)
T 1wkv_A 370 TGFKYL 375 (389)
T ss_dssp BGGGCH
T ss_pred CCccCH
Confidence 44443
No 36
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
Probab=100.00 E-value=1e-41 Score=350.63 Aligned_cols=335 Identities=13% Similarity=0.064 Sum_probs=228.9
Q ss_pred cccchhhHHHHHHh--hhhcccCCC----ccccccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeC
Q 013383 41 VRMSGEELLSRLLD--RKWALTSPD----SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRD 114 (444)
Q Consensus 41 ~~~~~e~~~~~l~~--~~w~~~~~~----~~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrE 114 (444)
-.+-||.+|+.|.+ ..+..-.++ ++++.+...+ ++.+|||++ ++++++.+ |.+||+|||
T Consensus 13 g~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---ig~~TPL~~---~~~l~~~~---------g~~i~lK~E 77 (396)
T 1qop_B 13 GMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNY---AGRPTALTK---CQNITAGT---------RTTLYLKRE 77 (396)
T ss_dssp EEESCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TCCSCCEEE---CHHHHTTS---------SEEEEEEEG
T ss_pred CEeCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHh---CCCCCCcEE---hhhhhhcc---------CCeEEEEec
Confidence 45678888888876 344322232 3344333333 567899999 88887654 479999999
Q ss_pred CCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-
Q 013383 115 DLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK- 193 (444)
Q Consensus 115 dl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga- 193 (444)
|+| | +||||+|.+.+++..++++|.++||+.. |+||||+|+|++|+++|++|+||||.........|+.+++.||+
T Consensus 78 ~l~-p-tGSfK~R~a~~~~~~a~~~g~~~vi~e~-ssGNhg~a~A~aa~~~G~~~~i~mp~~~~~~~~~~~~~~~~~GA~ 154 (396)
T 1qop_B 78 DLL-H-GGAHKTNQVLGQALLAKRMGKSEIIAET-GAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAE 154 (396)
T ss_dssp GGS-T-TSBTHHHHHHHHHHHHHHTTCCEEEEEE-SSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCE
T ss_pred cCC-C-CCcHHHHHHHHHHHHHHHcCcCEEEEec-CchHHHHHHHHHHHHCCCcEEEEEcCCchhhhhhHHHHHHHCCCE
Confidence 999 6 8999999999988889999999999832 45899999999999999999999997522222245678899998
Q ss_pred EEEeCCc--chhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCc--c
Q 013383 194 VTYVPRT--HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAG--D 269 (444)
Q Consensus 194 V~~v~~~--~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~--n 269 (444)
|+.++.+ .|++.... +.+ .| .+..++.++++.+.. +
T Consensus 155 V~~v~~~~~~~~~a~~~----a~~--------~~----------------------------~~~~~~~~~~~~~~~n~~ 194 (396)
T 1qop_B 155 VIPVHSGSATLKDACNE----ALR--------DW----------------------------SGSYETAHYMLGTAAGPH 194 (396)
T ss_dssp EEEECSTTSSHHHHHHH----HHH--------HH----------------------------HHHTTTEEECCCSSCSST
T ss_pred EEEECCCCCCHHHHHHH----HHH--------HH----------------------------HhccCCcEEEeCCcCCCC
Confidence 9999753 34432211 100 01 111223444544432 3
Q ss_pred HH--HHH-HHHHHHHHHHHhHH--cCCCCcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCChh-------HHHH
Q 013383 270 AV--ALL-GVFRLLQYLSQDHL--LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTID-------GYKQ 337 (444)
Q Consensus 270 p~--~~~-G~~t~~~Ei~~q~~--~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~~-------~~~~ 337 (444)
|. .+. |+.+++.||++|+. .+ ..||+||+|+|||||++|++.+++ .++.++|+||+++++.. .+..
T Consensus 195 p~~~~v~~g~~t~~~Ei~~Ql~~~~~-~~~d~vvvpvG~GG~~~Gi~~~~~-~~~~~~vigVe~~~~~~~~~~~~~~l~~ 272 (396)
T 1qop_B 195 PYPTIVREFQRMIGEETKAQILDKEG-RLPDAVIACVGGGSNAIGMFADFI-NDTSVGLIGVEPGGHGIETGEHGAPLKH 272 (396)
T ss_dssp THHHHHHHTTTHHHHHHHHHHHHHHS-SCCSEEEEECSSSHHHHHHHGGGT-TCTTSEEEEEEEEETBGGGTBSCCHHHH
T ss_pred CchHHHHHHHhHHHHHHHHHHHHhcC-CCCCEEEEcCCchHHHHHHHHHHh-cCCCCEEEEEeCCCccccchhhHHHHHc
Confidence 33 344 78889999999973 13 369999999999999999999998 58899999999988531 1211
Q ss_pred HHHHHHHH--------------HHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHHHHHHHHhCCccccc
Q 013383 338 QEKNLISE--------------FKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPV 403 (444)
Q Consensus 338 ~~~~l~~~--------------~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~~~la~~eGI~vEP~ 403 (444)
.......+ -..++..+ +..+.++...+.+.+.+.+..+.|+|+|+++++++|++++||+++|.
T Consensus 273 g~~~~~~g~~~~~~~~~~g~~~~~~tia~g---l~~~~~g~~~~~l~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~~~ 349 (396)
T 1qop_B 273 GRVGIYFGMKAPMMQTADGQIEESYSISAG---LDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALE 349 (396)
T ss_dssp SEEEEETEEEEEECBCTTSCBCCCCCSSGG---GCCSSCCHHHHHHHHTTSSEEEEEEHHHHHHHHHHHHHHHSCCBCHH
T ss_pred CCeeeeccchhhhcccccCCcCCCceeecc---CCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCccccc
Confidence 10000000 00000000 01111222333445566788999999999999999999999998874
Q ss_pred ccHHHHHHHHHHhhhcCC-CCCeEEEEEcCCC-ccchhh
Q 013383 404 YTLAAWEMATLLSDEKLK-QDADVVMLHTGGT-LGMFGL 440 (444)
Q Consensus 404 ysaaa~aal~~l~~~~~~-~g~~Vv~i~TGG~-~~l~~~ 440 (444)
++++++++.++.++ ++ ++++||+|+|||+ .++..+
T Consensus 350 -sa~a~a~a~~l~~~-~~~~~~~vv~i~tg~g~k~~~~~ 386 (396)
T 1qop_B 350 -SSHALAHALKMMRE-QPEKEQLLVVNLSGRGDKDIFTV 386 (396)
T ss_dssp -HHHHHHHHHHHHHH-STTSCEEEEEEECBBCGGGHHHH
T ss_pred -hHHHHHHHHHHHHh-cCCCCCeEEEEECCCCCCCHHHH
Confidence 78899998887653 54 6889999999974 565443
No 37
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=100.00 E-value=1.8e-40 Score=353.15 Aligned_cols=285 Identities=15% Similarity=0.097 Sum_probs=213.9
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCC----CeEEEeCcccchH
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIV----TDLVTCGGCQSAH 154 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~----~~Vvt~G~s~GNh 154 (444)
|+|||++ ++++++.+|. +++||+|+|++| | +||||+|++.+++.+|++.|. ++||++ |+|||
T Consensus 59 g~TPl~~---l~~l~~~~g~-------~~~i~~K~E~~~-p-tGS~K~R~a~~~i~~a~~~g~~~~g~~vv~~--ssGN~ 124 (527)
T 3pc3_A 59 GCTPLVK---LNNIPASDGI-------ECEMYAKCEFLN-P-GGSVKDRIGYRMVQDAEEQGLLKPGYTIIEP--TSGNT 124 (527)
T ss_dssp SCCCEEE---CCSHHHHTTC-------CSEEEEEEGGGS-T-TSBTTHHHHHHHHHHHHHHTCCCTTCEEEEE--CSSHH
T ss_pred CCCCcEE---cchhhhhcCC-------CcEEEEEeccCC-C-CCCHHHHHHHHHHHHHHHcCCCCCCCEEEEe--CCCHH
Confidence 8999999 9998877753 479999999999 6 799999999999999999997 788884 77999
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCCc-chhhHHHHHHHHhhhhhcCCCCccchhhhHHH
Q 013383 155 ATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRT-HYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 232 (444)
Q Consensus 155 g~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~~-~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~ 232 (444)
|+|+|++|+.+|++|+||||...+. .+..+++.||| |+.++.. .|++.+.+.+ .|+
T Consensus 125 g~a~A~~a~~~G~~~~iv~p~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~-~a~------------------ 182 (527)
T 3pc3_A 125 GIGLAMACAVKGYKCIIVMPEKMSN---EKVSALRTLGAKIIRTPTEAAYDSPEGLIY-VAQ------------------ 182 (527)
T ss_dssp HHHHHHHHHHHTCEEEEEEETTSCH---HHHHHHHHTTCEEEEECTTSCTTSTTSHHH-HHH------------------
T ss_pred HHHHHHHHHHhCCeEEEEEcCCCCH---HHHHHHHHCCCEEEEeCCCCCcccHHHHHH-HHH------------------
Confidence 9999999999999999999997764 35667899998 9999863 3443211111 011
Q ss_pred HHHhhhhhccccccccccccccccCCcEEEecCCCccHH-HHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHH
Q 013383 233 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAV-ALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLG 311 (444)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~-~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~ 311 (444)
++.+..+..|+ +.++.||. ...||.+++.||++|+ + ..||+||+|+|||||++|++
T Consensus 183 -------------------~~~~~~~~~~~-~~~~~n~~n~~~g~~t~~~Ei~~q~--~-~~~d~vv~~vG~GG~~~G~~ 239 (527)
T 3pc3_A 183 -------------------QLQRETPNSIV-LDQYRNAGNPLAHYDGTAAEILWQL--D-NKVDMIVVSAGTAGTISGIG 239 (527)
T ss_dssp -------------------HHHHHSSSEEC-CCTTTCTHHHHHHHHTHHHHHHHHT--T-TCCSEEEEECSSSHHHHHHH
T ss_pred -------------------HHHHhCCCcEe-cCCCCCcchHHHHHHHHHHHHHHhc--C-CCCCEEEEecCccHHHHHHH
Confidence 11122233443 34445664 4568999999999996 2 26999999999999999999
Q ss_pred HHHHhcCCCCeEEEEeccCChhHHHHHHHHH--HHHHHHHhccccccCCcccccccceeeeecccCCeEEecChHHHHHH
Q 013383 312 LGAICLGLPWEVTAIALVDTIDGYKQQEKNL--ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEAC 389 (444)
Q Consensus 312 ~~~~~~g~~~~vigV~~~~~~~~~~~~~~~l--~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~e~~~a~ 389 (444)
.+++...+.++|+|||+++++.......... .....+.++. +.+ ...+...+.+..+.|+|+|+++++
T Consensus 240 ~~~k~~~p~~~vigve~~~~~~~~~~~~~~~~~~~~~~~gi~~-------~~~---p~~~~~~~~d~~~~V~d~e~~~a~ 309 (527)
T 3pc3_A 240 RKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGY-------DFP---PTVFDDTVVDVWTKIGDSDCFPMS 309 (527)
T ss_dssp HHHHHHCTTSEEEEEEETTCCCSSSGGGGCCSCCCCSCCSCCC-------SSC---CTTCCGGGCCEEEEECGGGTHHHH
T ss_pred HHHHHhCCCCEEEEEecCCcccccchhhcCCCCCceeccccCC-------CCC---CcccchhhCcEEEEECHHHHHHHH
Confidence 9999999999999999998753211000000 0000001111 101 112445677889999999999999
Q ss_pred HHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCC
Q 013383 390 HRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGT 434 (444)
Q Consensus 390 ~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~ 434 (444)
++|++++||++||+ +|+++++++++.+ .+.++++||+|+|++-
T Consensus 310 r~l~~~eGi~~~ps-sa~alaaal~~~~-~~~~~~~vv~i~~d~g 352 (527)
T 3pc3_A 310 RRLNAEEGLLCGGS-SGGAMHAALEHAR-KLKKGQRCVVILPDGI 352 (527)
T ss_dssp HHHHHHHCCCBCHH-HHHHHHHHHHHHT-TCCTTCEEEEEECBBG
T ss_pred HHHHHHcCceEcHH-HHHHHHHHHHHHH-HcCCCCeEEEEEcCcc
Confidence 99999999999998 7999999999865 3567899999999754
No 38
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Probab=100.00 E-value=1.9e-38 Score=334.08 Aligned_cols=289 Identities=15% Similarity=0.115 Sum_probs=209.4
Q ss_pred ccCCCCCccccccccccc-cCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhhHHHHHh---c--CCCeEEEeCccc
Q 013383 78 HGGGPLGGISFLNNTCPF-LGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLED---H--IVTDLVTCGGCQ 151 (444)
Q Consensus 78 ~g~TPL~~~~~l~~l~~~-~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~---~--g~~~Vvt~G~s~ 151 (444)
.|+|||++ ++++++. +| ..+||+|+|++| | +||||||++.+++..+.. . |.++||+. |+
T Consensus 128 ~g~TPLv~---l~~L~~~~lg--------~~~l~~K~E~~n-P-TGSFKDRga~~~~~~l~~~~~~~~g~~~Vv~a--Ss 192 (486)
T 1e5x_A 128 EGNSNLFW---AERFGKQFLG--------MNDLWVKHCGIS-H-TGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCA--ST 192 (486)
T ss_dssp CCCCCEEE---CHHHHHHHHC--------CSSEEEEETTSS-T-TSBTTHHHHHHHHHHHHHHHHTTCCCCEEEEC--CC
T ss_pred CCCCCcEE---CcccchhhcC--------CCcEEEeeccCC-C-ccCHHHHHHHHHHHHHHHHHHcCCCCeEEEEc--CC
Confidence 38999999 8888876 65 258999999998 7 899999998888766544 2 56788863 78
Q ss_pred chHHHHHHHHHHHhCCeEEEEecCC-CCccchhhhHHHHhCCc-EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhh
Q 013383 152 SAHATAVAVSCAERGLKSHLLLRGE-QPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEI 229 (444)
Q Consensus 152 GNhg~alA~aaa~~Gl~~~i~~~~~-~~~~~~~~~~~~~~~Ga-V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~ 229 (444)
||||+|+|++|+++|++|+||||.. .+. .+..+++.||+ |+.|++. |+++.+..+ ++
T Consensus 193 GNtG~AlA~~a~~~Gi~~~I~~P~~~~s~---~k~~~~~~~GA~vi~v~g~-~dd~~~~a~----~l------------- 251 (486)
T 1e5x_A 193 GDTSAALSAYCASAGIPSIVFLPANKISM---AQLVQPIANGAFVLSIDTD-FDGCMKLIR----EI------------- 251 (486)
T ss_dssp SHHHHHHHHHHHHHTCCEEEEEEGGGCCH---HHHHHHHHTTCEEEEEESC-HHHHHHHHH----HH-------------
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCCCH---HHHHHHHhCCCEEEEECCC-HHHHHHHHH----HH-------------
Confidence 9999999999999999999999985 654 34567899998 9999874 665433221 11
Q ss_pred HHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHH
Q 013383 230 FEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVG 309 (444)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aG 309 (444)
.+.. ..|++|. .||...+|+.+++.||++|+ ++..||+||||+|+||+++|
T Consensus 252 ------------------------~~~~-~~~~vns--~N~~~i~gq~t~~~Ei~~ql--~~~~~D~vvvpvG~GG~i~G 302 (486)
T 1e5x_A 252 ------------------------TAEL-PIYLANS--LNSLRLEGQKTAAIEILQQF--DWQVPDWVIVPGGNLGNIYA 302 (486)
T ss_dssp ------------------------HHHS-CEEEGGG--SHHHHHHHHTHHHHHHHHHT--TSCCCSEEEEECSSTHHHHH
T ss_pred ------------------------HhcC-CEEEeCC--CCHHHHHHHHHHHHHHHHHc--CCCCCCEEEEeCCcHHHHHH
Confidence 1111 3666654 38999999999999999996 33368999999999999999
Q ss_pred HHHHHHhc---C---CCCeEEEEeccCChhHHHHHHHH--------HHHHHHHHhccccccCCcccccccceeeeecccC
Q 013383 310 LGLGAICL---G---LPWEVTAIALVDTIDGYKQQEKN--------LISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRP 375 (444)
Q Consensus 310 l~~~~~~~---g---~~~~vigV~~~~~~~~~~~~~~~--------l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ 375 (444)
++.+|+++ | +.++|+||++++..........+ ....+++.++.+ .|..++ ....+++++.+
T Consensus 303 i~~a~k~~~~~Gli~p~~rvi~Ve~~~~~~l~~~~~~G~~~~~~~~~~~t~a~gi~i~-~p~~~~----~~~~~~~~~~g 377 (486)
T 1e5x_A 303 FYKGFKXCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIG-DPVSID----RAVYALKKCNG 377 (486)
T ss_dssp HHHHHHHHHHTTSSSCCCEEEEEEETTSSTHHHHHHTTTTTCCC-----------------CCCH----HHHHHHHHTTC
T ss_pred HHHHHHHhhhhccCCCCCEEEEEecCCCchHHHHHHcCCCccccCCCCCeeCccccCC-CCccHH----HHHHHHhccCC
Confidence 99999764 4 67899999998754322211110 112233322221 111111 11112344444
Q ss_pred CeEEecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhh-cCCCCCeEEEEEcCCCccch
Q 013383 376 RKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDE-KLKQDADVVMLHTGGTLGMF 438 (444)
Q Consensus 376 ~~~~v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~-~~~~g~~Vv~i~TGG~~~l~ 438 (444)
..+.|+|+|++++++ +++++||++||+ +|+++++++++.++ .+.++++||+|+|||.....
T Consensus 378 ~~~~Vsd~e~~~ai~-l~~~eGi~~ePs-sA~alaa~~~~~~~g~~~~~~~vV~i~Tg~~~k~~ 439 (486)
T 1e5x_A 378 IVEEATEEELMDAMA-QADSTGMFICPH-TGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFT 439 (486)
T ss_dssp EEEEECHHHHHHHHH-HHHHTTCCCCHH-HHHHHHHHHHHHHTTSSCTTCCEEEEECBCGGGGH
T ss_pred eEEEECHHHHHHHHH-HHHHCCeEEChh-HHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCccCH
Confidence 488999999999999 778999999998 79999999988764 35678899999999987554
No 39
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1
Probab=100.00 E-value=1.9e-33 Score=291.94 Aligned_cols=284 Identities=10% Similarity=-0.035 Sum_probs=190.6
Q ss_pred ccCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhh---HHHHHhcCCCeEEEeCcccchH
Q 013383 78 HGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDAL---LPLLEDHIVTDLVTCGGCQSAH 154 (444)
Q Consensus 78 ~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~---l~~a~~~g~~~Vvt~G~s~GNh 154 (444)
+++|||++ +++ +||+ +|++++| +||||||++.++ +..+++.+..+|+++ |+|||
T Consensus 81 ~~~TPL~~---l~~----------------~i~~-~E~~~~p-TgSfKdr~a~~l~~~l~~a~~~~~~~Iv~a--tsGNt 137 (428)
T 1vb3_A 81 AFPAPVAN---VES----------------DVGC-LELFHGP-TLAFKDFGGRFMAQMLTHIAGDKPVTILTA--TSGDT 137 (428)
T ss_dssp CSCCCEEE---EET----------------TEEE-EECCCST-TSBTHHHHHHHHHHHHHHHTTTCCEEEEEE--CSSSH
T ss_pred CCCCCeEE---ecC----------------CeEE-eeccCCC-cccHHHHHHHHHHHHHHHHHhcCCCEEEec--CCchH
Confidence 48899999 532 5999 8999557 899999999887 455544445566664 67999
Q ss_pred HHHHH-HHHHHhCCeEEEEecCC-CCccchhhhHHHHhCCc-E--EEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhh
Q 013383 155 ATAVA-VSCAERGLKSHLLLRGE-QPQILTGYNLISTIYGK-V--TYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEI 229 (444)
Q Consensus 155 g~alA-~aaa~~Gl~~~i~~~~~-~~~~~~~~~~~~~~~Ga-V--~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~ 229 (444)
|+|+| ++|+++|++|+||||.. .+.. +..+|+.||+ | +.+++ .+++..+..+ +++. +|.
T Consensus 138 G~A~A~~~a~~~G~~~~I~~P~~~~s~~---k~~~m~~~GA~V~~v~v~g-~~d~~~~~~~----~~~~-----d~~--- 201 (428)
T 1vb3_A 138 GAAVAHAFYGLPNVKVVILYPRGKISPL---QEKLFCTLGGNIETVAIDG-DFDACQALVK----QAFD-----DEE--- 201 (428)
T ss_dssp HHHHHHHTTTCTTEEEEEEEETTCSCHH---HHHHHHSCCTTEEEEEEES-CHHHHHHHHH----HGGG-----CHH---
T ss_pred HHHHHHHHhhhcCCeEEEEECCCCCCHH---HHHHHHhcCCeEEEEEeCC-CHHHHHHHHH----HHHh-----chh---
Confidence 99999 69999999999999984 6543 3457899997 8 77776 4665433322 1110 110
Q ss_pred HHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHH
Q 013383 230 FEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVG 309 (444)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aG 309 (444)
+.... ..+ ..+..||....|+.+++.||++|+......||+||+|+|+||+++|
T Consensus 202 -----------------------~~~~~-~~~--~~n~~n~~~~~gq~t~~~Ei~~ql~~~g~~~d~vvvpvG~GG~i~G 255 (428)
T 1vb3_A 202 -----------------------LKVAL-GLN--SANSINISRLLAQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTA 255 (428)
T ss_dssp -----------------------HHHHH-TEE--CCSTTSHHHHHHTTHHHHHHHTTSCTTTTTSEEEEEECSSCHHHHH
T ss_pred -----------------------hhhhc-Cee--eCCCCCHHHHHHHHHHHHHHHHHcccccCCCCEEEEeCCchHHHHH
Confidence 00011 222 2334689889999999999999962111269999999999999999
Q ss_pred HHHHHHhcCCCCeEEEEeccCChhHHHHHHH-HHHH--HHHHHhccccccCCcccccccceeeeecc-----cCCeEEec
Q 013383 310 LGLGAICLGLPWEVTAIALVDTIDGYKQQEK-NLIS--EFKRLFGFLLKKSSLNEVDGEIVHWVERC-----RPRKFGNV 381 (444)
Q Consensus 310 l~~~~~~~g~~~~vigV~~~~~~~~~~~~~~-~l~~--~~~~~i~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~v~ 381 (444)
++.+++...+.+|||||+.+++. +..... +... ....++..++ +...+...+..+.+.++. .+..+.|+
T Consensus 256 ~~~a~~~g~p~~kii~a~~~~~~--l~~~~~~G~~~~~~~~~tis~g~-~i~~p~~~~~~~~l~~~~~~~~~~~~~~~Vs 332 (428)
T 1vb3_A 256 GLLAKSLGLPVKRFIAATNVNDT--VPRFLHDGQWSPKATQATLSNAM-DVSQPNNWPRVEELFRRKIWQLKELGYAAVD 332 (428)
T ss_dssp HHHHHHTTCCCSEEEEEECSCCH--HHHHHHHSCCCCCCCCCCSSGGG-CCSSCTTHHHHHHHHHHTTCCGGGSEEEECC
T ss_pred HHHHHHcCCCCCeEEeecCCChH--HHHHHHcCCcccCCCCCcccchh-cCCCCccHHHHHHHHhcchhhhhCcEEEEEC
Confidence 99998854455699999876632 211110 0000 0000111111 000000000011223333 56789999
Q ss_pred ChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCc
Q 013383 382 FEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTL 435 (444)
Q Consensus 382 d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~ 435 (444)
|+|++++++++ +++|+++||+ ||+++++++++.+ ++++||+++||++.
T Consensus 333 d~e~~~a~~~l-~~eGi~~~p~-sa~a~aa~~~~~~----~~~~vV~i~tg~~~ 380 (428)
T 1vb3_A 333 DETTQQTMREL-KELGYTSEPH-AAVAYRALRDQLN----PGEYGLFLGTAHPA 380 (428)
T ss_dssp HHHHHHHHHHH-HHTTCCCCHH-HHHHHHHHHTTCC----TTCEEEEEECBCGG
T ss_pred HHHHHHHHHHH-HHCCeEECch-HHHHHHHHHHHhC----CCCcEEEEeCCCCC
Confidence 99999999999 9999999998 7999999987643 57899999999874
No 40
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1
Probab=99.94 E-value=5e-27 Score=247.90 Aligned_cols=287 Identities=11% Similarity=0.054 Sum_probs=181.6
Q ss_pred cCCCCCccccccccccccCCCccccCCCCeEEEEeCCCCCCCCcchhhHHHHhh---HHHHH-hcC---------CCeEE
Q 013383 79 GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDAL---LPLLE-DHI---------VTDLV 145 (444)
Q Consensus 79 g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrEdl~~p~~ggnK~Rkl~~~---l~~a~-~~g---------~~~Vv 145 (444)
|+|||+++ .++++ .++|+|.|.+| | +||||||.+.++ +.++. +.| ..+||
T Consensus 95 g~TPLv~~-~l~~l--------------~~l~~K~e~~n-P-TgSFKDrga~~~~~~~~~a~~~~g~~~~~~~~~~~~Iv 157 (514)
T 1kl7_A 95 EVTPLVQN-VTGDK--------------ENLHILELFHG-P-TYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQITVV 157 (514)
T ss_dssp TSSCEECC-TTCSS--------------SCEEEEECCCS-T-TSBTHHHHHHHHHHHHHHHHHHHHTTSCSSSCCCEEEE
T ss_pred CCCceeeh-hcccc--------------cchhhhhhccC-C-CCcHHHHHHHHHHHHHHHHHHhcCCccccccCCCCEEE
Confidence 88999883 23222 26999999998 7 899999999888 44442 334 34566
Q ss_pred EeCcccchHHHHHHHHH--HHhCCeEEEEecCC-CCccchhhhHHHHhCC--c-EEEeCCcchhhHHHHHHHHhhhhhcC
Q 013383 146 TCGGCQSAHATAVAVSC--AERGLKSHLLLRGE-QPQILTGYNLISTIYG--K-VTYVPRTHYAHRIEMLKSYANLVAGN 219 (444)
Q Consensus 146 t~G~s~GNhg~alA~aa--a~~Gl~~~i~~~~~-~~~~~~~~~~~~~~~G--a-V~~v~~~~~~~~~~~~~~~A~~~a~~ 219 (444)
+. |+||||.| |++| ++.|++|+||||.. .+..+ ...+++.+| + |+.|++ .|++..+..+ +++..
T Consensus 158 ~A--TSGNtG~A-A~~a~a~~~Gi~~~I~~P~~~~S~~q--~~qm~~~~g~~~~vv~v~g-~fdda~~~vk----~l~~~ 227 (514)
T 1kl7_A 158 GA--TSGDTGSA-AIYGLRGKKDVSVFILYPTGRISPIQ--EEQMTTVPDENVQTLSVTG-TFDNCQDIVK----AIFGD 227 (514)
T ss_dssp EE--CSSSHHHH-HHHHHTTCTTEEEEEEEETTSSCHHH--HHHHHHCCCTTEEEEEESS-CHHHHHHHHH----HHHHC
T ss_pred EC--CCCcHHHH-HHHHHHhhcCCeEEEEEcCCCCCHHH--HHHHhhhcCCCEEEEEcCC-CHHHHHHHHH----HHHhc
Confidence 54 77999999 6666 89999999999986 55432 222333344 4 677776 4776444322 22111
Q ss_pred CCCccchhhhHHHHHHhhhhhccccccccccccccccCCcEEEecCCCccHHHHHHHHHHHHHHHHhH-HcCCCCcCEEE
Q 013383 220 NGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDH-LLGRKRAIKFV 298 (444)
Q Consensus 220 ~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~-~~g~~~~d~vv 298 (444)
.+ +... ...+. .+..||..+.|..+...|+.+|+ ..-...||+||
T Consensus 228 ~~-------------------------------~~~~-~~~~~--~Ns~N~~ri~gQ~tyy~e~~~ql~~~~~~~~d~~v 273 (514)
T 1kl7_A 228 KE-------------------------------FNSK-HNVGA--VNSINWARILAQMTYYFYSFFQATNGKDSKKVKFV 273 (514)
T ss_dssp SS-------------------------------CC---CCBCC--CCSCCHHHHHHHHHHHHHHHHHHHSSSSCCCEEEE
T ss_pred cc-------------------------------cccc-ceeEe--eCCCCHhHHhhHHHHHHHHHHHHhhhcCCCCcEEE
Confidence 10 0000 11121 22347988999999999999997 21013589999
Q ss_pred EeCCChhhHHHHHHHHHhcC-CCCeEEEEeccCChhHHHHHHHHH--H-HHHHHHhccccccCCccccccccee-----e
Q 013383 299 VDAGTGTTAVGLGLGAICLG-LPWEVTAIALVDTIDGYKQQEKNL--I-SEFKRLFGFLLKKSSLNEVDGEIVH-----W 369 (444)
Q Consensus 299 v~vGtGgt~aGl~~~~~~~g-~~~~vigV~~~~~~~~~~~~~~~l--~-~~~~~~i~~~~~~~~~~~~~~~~~~-----l 369 (444)
||+|+||++.|.+.+. .+| +.+||++|++++++- .+....+. . .....+++.++ .+.. +..+. +
T Consensus 274 vP~GngG~i~a~~~ak-~~G~p~~rli~v~~~n~~l-~~~~~~G~~~~~~~~~~Tis~am-di~~----psn~er~l~~l 346 (514)
T 1kl7_A 274 VPSGNFGDILAGYFAK-KMGLPIEKLAIATNENDIL-DRFLKSGLYERSDKVAATLSPAM-DILI----SSNFERLLWYL 346 (514)
T ss_dssp EECSSSHHHHHHHHHH-HHTCCCCCEEEEECSCCHH-HHHHHHSEEECCSSCCCCSCGGG-CCSS----CTTHHHHHHHH
T ss_pred EECCchHHHHHHHHHH-HcCCCCCEEEEEeCCcchH-HHHHhcCCccCCCCCCCeechhh-hcCC----CCcHHHHHHHH
Confidence 9999999999998754 455 456999999988432 11100000 0 00001111110 0000 01111 0
Q ss_pred ee-----------------------ccc---------------CCeEEecChHHHHHHHHHHHHh----CCcccccccHH
Q 013383 370 VE-----------------------RCR---------------PRKFGNVFEGEIEACHRIAQLT----GILVDPVYTLA 407 (444)
Q Consensus 370 ~~-----------------------~~~---------------~~~~~v~d~e~~~a~~~la~~e----GI~vEP~ysaa 407 (444)
.+ ... ...+.|+|+|++++++++++++ |+++||. ||+
T Consensus 347 ~~~~~~~~~~~~d~~~v~~~~~~l~~~gg~~~~~~~~~~~~~~f~~~~Vsd~e~~~ai~~l~~~~~~~~G~~~ep~-tAv 425 (514)
T 1kl7_A 347 AREYLANGDDLKAGEIVNNWFQELKTNGKFQVDKSIIEGASKDFTSERVSNEETSETIKKIYESSVNPKHYILDPH-TAV 425 (514)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHHSEEECCHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHCCSSTTCCCCHH-HHH
T ss_pred hccccccccccccHHHHHHHHHHHHhcCCeeccHHHHHHhhcCceEEEECHHHHHHHHHHHHHhCCCCCCEEEccc-HHH
Confidence 00 000 1257889999999999999999 9999997 799
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEEcCCC
Q 013383 408 AWEMATLLSDEKLKQDADVVMLHTGGT 434 (444)
Q Consensus 408 a~aal~~l~~~~~~~g~~Vv~i~TGG~ 434 (444)
+++++.++.++.+.++.+||++.||.-
T Consensus 426 ~~aa~~~~~~~g~~~~~~vV~l~Ta~~ 452 (514)
T 1kl7_A 426 GVCATERLIAKDNDKSIQYISLSTAHP 452 (514)
T ss_dssp HHHHHHHHHHHHCCTTSEEEEEECBCG
T ss_pred HHHHHHHHHHhccCCCCcEEEEECCch
Confidence 999999886543445788999988854
No 41
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV}
Probab=99.94 E-value=4.1e-26 Score=238.27 Aligned_cols=270 Identities=11% Similarity=0.034 Sum_probs=176.2
Q ss_pred eEEEEeCCCCCCCCcchhhHHHHhh---HHHH-HhcCCC-eEEEeCcccchHH-HHHHHHHHHhCCeEEEEecCC-CCcc
Q 013383 108 CFYVVRDDLLHPLVNGNKARKMDAL---LPLL-EDHIVT-DLVTCGGCQSAHA-TAVAVSCAERGLKSHLLLRGE-QPQI 180 (444)
Q Consensus 108 ~l~vKrEdl~~p~~ggnK~Rkl~~~---l~~a-~~~g~~-~Vvt~G~s~GNhg-~alA~aaa~~Gl~~~i~~~~~-~~~~ 180 (444)
++|+|.|.+| | +||||||.+.++ +..+ ++.|.+ +||+. |+|||| .++|++|++.|++|+||||.. .+..
T Consensus 102 ~~~~kee~~~-P-TgSFKDRga~~~~~~l~~a~~~~g~~~~Vv~A--SSGNtG~aa~aa~a~~~Gi~~~I~~P~~~~s~~ 177 (468)
T 4f4f_A 102 NEFVLELFHG-P-TLAFKDVAMQLLARMMDYVLAQRGERATIVGA--TSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPV 177 (468)
T ss_dssp TEEEEECCCS-T-TSBTHHHHHHHHHHHHHHHHHHTTCCEEEEEE--CSSHHHHHHHHHHTTCSSEEEEEEEETTCSCHH
T ss_pred CeehHHhccC-C-cccHHHHHHHHHHHHHHHHHHhcCCCcEEEEE--CCchHHHHHHHHHHhccCCcEEEEeCCCCCCHH
Confidence 6999999998 7 899999999988 6666 366764 67764 679999 555777999999999999987 6654
Q ss_pred chhhhHHHHhCC-c-E--EEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhhhhhcccccccccccccccc
Q 013383 181 LTGYNLISTIYG-K-V--TYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNC 256 (444)
Q Consensus 181 ~~~~~~~~~~~G-a-V--~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (444)
+ ..+++.+| + | +.|++ .|+++.+..++ ++.+. .+ ..
T Consensus 178 k---~~~~~~~gganV~vv~v~g-~fdda~~~~k~----~~~d~------------~~-------------------~~- 217 (468)
T 4f4f_A 178 Q---QRQMTSSGFSNVHALSIEG-NFDDCQNLVKG----MFNDL------------EF-------------------CD- 217 (468)
T ss_dssp H---HHHHHCSCCTTEEEEEEES-CHHHHHHHHHH----HHHCH------------HH-------------------HH-
T ss_pred H---HHHHHhcCCCeEEEeecCC-CHHHHHHHHHH----HHhcc------------cc-------------------cc-
Confidence 3 34678886 4 5 56665 57765554322 11100 00 00
Q ss_pred CCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCE---EEEeCCChhhHHHHHHHHHhcCC-CCeEEEEeccCCh
Q 013383 257 RKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIK---FVVDAGTGTTAVGLGLGAICLGL-PWEVTAIALVDTI 332 (444)
Q Consensus 257 ~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~---vvv~vGtGgt~aGl~~~~~~~g~-~~~vigV~~~~~~ 332 (444)
....+.+|. .||..+.|+.+++.||++|+ +.+|. ||||+|+||+++|++.+ +.+|. ..||++| +.+..
T Consensus 218 ~~~~~~vns--in~~ri~GQ~T~~~Ei~~ql----~~~d~~v~vvVPvG~GG~i~g~~~A-k~mGlPi~kli~a-~n~~~ 289 (468)
T 4f4f_A 218 ALSLSGVNS--INWARIMPQVVYYFTAALSL----GAPDRAVSFTVPTGNFGDIFAGYVA-KRMGLPIEQLIIA-TNDND 289 (468)
T ss_dssp HHTEEECCT--TSHHHHGGGHHHHHHHHHHT----TTTSSCEEEEEECSSSHHHHHHHHH-HHHTCCEEEEEEE-ECSCC
T ss_pred ccceEeCCC--CCHHHHHhHHHHHHHHHHhc----ccCCCCeEEEEEeCCcHHHHHHHHH-HHhCCCCCEEEEE-eCCch
Confidence 012344443 48999999999999999996 25788 99999999999999988 44775 4599999 55443
Q ss_pred hHHHHHHHHH--HHHHHHHhccccccCCcc----cc-----c---------------ccceeee----ecc--cCCeEEe
Q 013383 333 DGYKQQEKNL--ISEFKRLFGFLLKKSSLN----EV-----D---------------GEIVHWV----ERC--RPRKFGN 380 (444)
Q Consensus 333 ~~~~~~~~~l--~~~~~~~i~~~~~~~~~~----~~-----~---------------~~~~~l~----~~~--~~~~~~v 380 (444)
...+....+. ......++..++ ++..+ ++ + .+.+.+. +.. ....+.|
T Consensus 290 ~l~~~l~~G~~~~~~~~~Tia~sm-di~~~sN~erl~~~l~~~d~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~V 368 (468)
T 4f4f_A 290 ILSRTLESGAYEMRGVAQTTSPSM-DIQISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSAGRS 368 (468)
T ss_dssp HHHHHHHHSEEECCCCCCCSCGGG-CCSSCTTHHHHHHHHTTTCHHHHHHHHHHHHHHSEEECCHHHHHHHHHHEEEEEC
T ss_pred HHHHHHHcCCceecCCcceeCchh-hcCccchHHHHHHHHhccCHHHHHHHHHHHHhcCCeeccHHHHHHHhhcceEEEE
Confidence 3221111000 000001111110 00000 00 0 0000000 000 0125688
Q ss_pred cChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcCCCc
Q 013383 381 VFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTL 435 (444)
Q Consensus 381 ~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TGG~~ 435 (444)
+|+|+.++++++++++|+++||. +|+++++++++. .++.++|++.||...
T Consensus 369 sD~ei~~ai~~l~~~~g~~vEP~-~Ava~aa~~~~~----~~~~~~V~l~Ta~~~ 418 (468)
T 4f4f_A 369 TVDETAATIESVLSKDGYLLDPH-SAIGVKVAREKA----SGTAPMVVLATAHPA 418 (468)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCHH-HHHHHHHHHHHC----CSSSCEEEEECBCGG
T ss_pred CHHHHHHHHHHHHHHCCEEECHh-HHHHHHHHHHHh----CCCCeEEEEecCCcc
Confidence 99999999999999999999997 789999998863 247789999998653
No 42
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}
Probab=99.92 E-value=1.2e-24 Score=227.48 Aligned_cols=272 Identities=11% Similarity=0.077 Sum_probs=174.5
Q ss_pred eEEEEeCCCCCCCCcchhhHHHHhh---HHHHH-hcCCCe-EEEeCcccchHHHHHHHHHH-HhCCeEEEEecCC-CCcc
Q 013383 108 CFYVVRDDLLHPLVNGNKARKMDAL---LPLLE-DHIVTD-LVTCGGCQSAHATAVAVSCA-ERGLKSHLLLRGE-QPQI 180 (444)
Q Consensus 108 ~l~vKrEdl~~p~~ggnK~Rkl~~~---l~~a~-~~g~~~-Vvt~G~s~GNhg~alA~aaa-~~Gl~~~i~~~~~-~~~~ 180 (444)
++|+|.|.+| | +||||||.+.++ +..+. +.|.+. |++. |+||||.|+|++++ +.|++|+||||.. .+..
T Consensus 115 ~l~vkee~~~-P-TgSFKDRga~~~~~ll~~a~~~~g~~~~Vv~A--SSGNtG~Aaa~a~~~~~Gi~~~I~~P~~~~s~~ 190 (487)
T 3v7n_A 115 PVSLLELSNG-P-TLAFKDMAMQLLGNLFEYTLAKHGETLNILGA--TSGDTGSAAEYAMRGKEGVRVFMLSPHKKMSAF 190 (487)
T ss_dssp EEEEEECCCS-T-TSBTHHHHHHHHHHHHHHHHHTTTCCEEEEEE--CSSHHHHHHHHHHTTCTTEEEEEEEETTCSCHH
T ss_pred ceeHHhhccC-C-cCcHHHHHHHHHHHHHHHHHHhcCCCcEEEEe--CChHHHHHHHHHHHhccCCeEEEEECCCCCCHH
Confidence 3999999998 7 899999999888 77774 567654 6654 67999999776665 8999999999986 6654
Q ss_pred chhhhHHHHhCCc----EEEeCCcchhhHHHHHHHHhhhhhcCCCCccchhhhHHHHHHhhhhhcccccccccccccccc
Q 013383 181 LTGYNLISTIYGK----VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNC 256 (444)
Q Consensus 181 ~~~~~~~~~~~Ga----V~~v~~~~~~~~~~~~~~~A~~~a~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (444)
+..+|+.||+ |+.|++ .|+++.+..++ ++.+. .+ ..
T Consensus 191 ---k~~qm~~~Ga~nv~vv~v~G-~fDda~~~vk~----~~~d~------------~~-------------------~~- 230 (487)
T 3v7n_A 191 ---QTAQMYSLQDPNIFNLAVNG-VFDDCQDIVKA----VSNDH------------AF-------------------KA- 230 (487)
T ss_dssp ---HHHHHHTCCCTTEEEEEEES-CHHHHHHHHHH----HHTCH------------HH-------------------HH-
T ss_pred ---HHHHHHhcCCCcEEEEEECC-CHHHHHHHHHH----hhhch------------HH-------------------Hh-
Confidence 3457899994 556665 57765554322 11100 00 00
Q ss_pred CCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHhcCCC-CeEEEEeccCChh--
Q 013383 257 RKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLP-WEVTAIALVDTID-- 333 (444)
Q Consensus 257 ~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~-~~vigV~~~~~~~-- 333 (444)
....+.+|. .||..+.|..+...|+..|+..+++.||.|+||+|+||+++|++.+.+ +|++ .|||+|++++++-
T Consensus 231 ~~~l~~vns--~Np~ri~gQ~tyy~~~~~el~~~~~~~d~vvVP~GngG~i~g~~~A~~-mGlp~~rli~a~~~n~~l~~ 307 (487)
T 3v7n_A 231 QQKIGTVNS--INWARVVAQVVYYFKGYFAATRSNDERVSFTVPSGNFGNVCAGHIARM-MGLPIEKLVVATNENDVLDE 307 (487)
T ss_dssp HTTEECCST--TCHHHHHHHHHHHHHHHHHTCSSTTCCEEEEEGGGCHHHHHHHHHHHH-TTCCEEEEEEECTTCHHHHH
T ss_pred hcCeeeeCC--CCHHHHHhHHHHHHHHHHHHHhcCCCCcEEEEecCchHHHHHHHHHHH-cCCCCceEEEEeCCCcHHHH
Confidence 112333433 479889999888888887763234579999999999999999998755 7754 5999999987321
Q ss_pred HHHHHHH---HHHHHH---HHHhccccccCCcccc-----c---------------ccceee------ee--cccCCeEE
Q 013383 334 GYKQQEK---NLISEF---KRLFGFLLKKSSLNEV-----D---------------GEIVHW------VE--RCRPRKFG 379 (444)
Q Consensus 334 ~~~~~~~---~l~~~~---~~~i~~~~~~~~~~~~-----~---------------~~~~~l------~~--~~~~~~~~ 379 (444)
.+..... ....++ +..+... .|.++.++ + ...+.+ .. +.....+.
T Consensus 308 ~~~~G~~~~~~~~~Ti~t~s~smdI~-~psn~er~l~~l~~~d~~~~~~~m~~l~~~g~~~l~~~~~~~~~~~~~~~~~~ 386 (487)
T 3v7n_A 308 FFRTGAYRVRSAQDTYHTSSPSMDIS-KASNFERFVFDLLGRDPARVVQLFRDVEQKGGFDLAASGDFARVAEFGFVSGR 386 (487)
T ss_dssp HHHHSEEEC-------------------CHHHHHHHHHHTTTCHHHHHHHHHHHHHHSEEETTTTTCTHHHHHTTEEEEC
T ss_pred HHHcCCcccCCCCCccccCCchhccC-CCccHHHHHHHHhCCCHHHHHHHHHHHHhcCCeecccchhHHHHHhhcceEEE
Confidence 1111100 011111 1111100 00000000 0 000000 00 01112457
Q ss_pred ecChHHHHHHHHHHHHhCCcccccccHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 013383 380 NVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTG 432 (444)
Q Consensus 380 v~d~e~~~a~~~la~~eGI~vEP~ysaaa~aal~~l~~~~~~~g~~Vv~i~TG 432 (444)
|+|+|+.++++++++++|+++||. ||++++++.++. .++.++|++.||
T Consensus 387 VsDee~~~air~l~~~~G~l~dPh-tAva~aaa~~~~----~~~~~~V~l~Ta 434 (487)
T 3v7n_A 387 STHADRIATIRDVFERYRTMIDTH-TADGLKVAREHL----RPGVPMVVLETA 434 (487)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCCHH-HHHHHHHHTTSC----CTTSCEEEEECB
T ss_pred ECHHHHHHHHHHHHHHcCEEEChh-HHHHHHHHHHhh----CCCCcEEEEecC
Confidence 899999999999999999999997 789999988754 246788888887
No 43
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=61.38 E-value=9.9 Score=35.43 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=30.1
Q ss_pred cCCCeEEEeCc--------------ccchHHHHHHHHHHHhCCeEEEEecCC
Q 013383 139 HIVTDLVTCGG--------------CQSAHATAVAVSCAERGLKSHLLLRGE 176 (444)
Q Consensus 139 ~g~~~Vvt~G~--------------s~GNhg~alA~aaa~~Gl~~~i~~~~~ 176 (444)
.|.+-+||.|+ |+|-.|.++|-++++.|.+++++.+..
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~ 53 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKR 53 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35566777654 278899999999999999999988754
No 44
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=60.84 E-value=21 Score=34.80 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=33.4
Q ss_pred HhcCCC-eEEEeCcc----------------cchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 137 EDHIVT-DLVTCGGC----------------QSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 137 ~~~g~~-~Vvt~G~s----------------~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
...|.+ -+||.|++ +|..|.++|-++.+.|..++++.+...
T Consensus 33 ~l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~s 90 (313)
T 1p9o_A 33 GAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARS 90 (313)
T ss_dssp HHTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTS
T ss_pred hhcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 346777 77888764 489999999999999999998887543
No 45
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A
Probab=58.16 E-value=21 Score=32.53 Aligned_cols=42 Identities=31% Similarity=0.355 Sum_probs=34.0
Q ss_pred HHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 134 PLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 134 ~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
..+++.|+++|+-+|-.+...-.++|.-|..+|++++|+...
T Consensus 147 ~~L~~~gi~~l~i~G~~t~~CV~~Ta~~a~~~g~~v~v~~Da 188 (216)
T 3v8e_A 147 KYLEKHHTDEVYIVGVALEYXVKATAISAAELGYKTTVLLDY 188 (216)
T ss_dssp HHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHhCCCCEEEEEEeccccHHHHHHHHHHHCCCEEEEeccc
Confidence 344678999999888666666778899999999999998764
No 46
>3gbc_A Pyrazinamidase/nicotinamidas PNCA; nicotinamidase - pyrazinamidase, resistance to pyrazinamide, hydrolase; 2.20A {Mycobacterium tuberculosis} PDB: 3pl1_A
Probab=57.21 E-value=23 Score=31.33 Aligned_cols=61 Identities=13% Similarity=0.028 Sum_probs=41.6
Q ss_pred HHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccc---hhhhHHHHhCCc
Q 013383 133 LPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQIL---TGYNLISTIYGK 193 (444)
Q Consensus 133 l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~---~~~~~~~~~~Ga 193 (444)
...+++.|+++|+-+|-.+-..-.++|.-|..+|++++|+........+ ......|+..|+
T Consensus 117 ~~~L~~~gi~~lvv~G~~t~~CV~~Ta~da~~~G~~v~v~~Da~~~~~~~~~~~al~~m~~~G~ 180 (186)
T 3gbc_A 117 LNWLRQRGVDEVDVVGIATDHCVRQTAEDAVRNGLATRVLVDLTAGVSADTTVAALEEMRTASV 180 (186)
T ss_dssp HHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCEEEEEEecccHHHHHHHHHHHHCCCeEEEEhhhcCCCCHHHHHHHHHHHHHcCC
Confidence 3445678999999888655556668899999999999998765333221 112234566776
No 47
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A*
Probab=53.09 E-value=23 Score=32.58 Aligned_cols=42 Identities=12% Similarity=0.183 Sum_probs=33.6
Q ss_pred HHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCC
Q 013383 135 LLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (444)
Q Consensus 135 ~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~ 176 (444)
.+++.|+++||-+|-.+...-.++|.-|..+|++++|+-...
T Consensus 161 ~L~~~gi~~lvv~G~~T~~CV~~Ta~dA~~~Gy~V~Vv~Da~ 202 (235)
T 2wt9_A 161 YLKERGIDTVYVVGIATDFCVAWTALDAVKQGFKTLVIEDAC 202 (235)
T ss_dssp HHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHHCCCCEEEEEEeCccHHHHHHHHHHHhCCCEEEEechhc
Confidence 346689999998886665566789999999999999987653
No 48
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum}
Probab=51.53 E-value=37 Score=29.70 Aligned_cols=62 Identities=15% Similarity=-0.000 Sum_probs=42.1
Q ss_pred HHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC-CccchhhhHHHHh-CCc-EEE
Q 013383 134 PLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ-PQILTGYNLISTI-YGK-VTY 196 (444)
Q Consensus 134 ~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~-~~~~~~~~~~~~~-~Ga-V~~ 196 (444)
..+++.|.++||-+|-.+...-.++|.-|..+|++++|+..... ++..... ..|+. +|+ |+-
T Consensus 103 ~~L~~~gi~~lii~G~~T~~CV~~Ta~da~~~Gy~V~vv~Da~as~~~~~~a-~~m~~~~ga~v~~ 167 (182)
T 3eef_A 103 MILRANGIDTVVLIGLDADICVRHTAADALYRNYRIIVVEDAVAARIDPNWK-DYFTRVYGATVKR 167 (182)
T ss_dssp HHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSSCTTHH-HHHHHHHCCEEEC
T ss_pred HHHHhcCCCeEEEEEeccCHHHHHHHHHHHHCCCEEEEehhhcCCHHHHHHH-HHHHHhcCcEEeE
Confidence 33466899999988866655667889999999999999876422 3222222 44566 786 543
No 49
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=49.60 E-value=21 Score=33.07 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=29.0
Q ss_pred cCCCeEEEeCc--------------ccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 139 HIVTDLVTCGG--------------CQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 139 ~g~~~Vvt~G~--------------s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
.|...+||.|+ |+|-.|.++|.++++.|.+++++...
T Consensus 7 ~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~ 57 (226)
T 1u7z_A 7 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGP 57 (226)
T ss_dssp TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence 35556777553 36889999999999999999887654
No 50
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A
Probab=49.40 E-value=37 Score=29.54 Aligned_cols=68 Identities=15% Similarity=0.191 Sum_probs=44.2
Q ss_pred CeEEEEeCCCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 107 RCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 107 ~~l~vKrEdl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
..++-|.-+-.....++|..-.+. ...++.|+++||-+|-.+...-.++|.-|..+|++++++.....
T Consensus 89 ~~vi~K~~~~~~~~~saF~~t~L~---~~L~~~gi~~lvi~G~~t~~CV~~Ta~da~~~Gy~v~vv~Da~~ 156 (180)
T 1im5_A 89 AVIISKATEPDKEAYSGFEGTDLA---KILRGNGVKRVYICGVATEYCVRATALDALKHGFEVYLLRDAVK 156 (180)
T ss_dssp CEEEEECCSTTCCCCSTTTTSSHH---HHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cEEEECCCCCCCccccCccCCCHH---HHHHhCCCCEEEEEEeecCHHHHHHHHHHHHCCCEEEEehhhcc
Confidence 356778653221213344322233 33466899999988865555666888999999999999887543
No 51
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris}
Probab=47.95 E-value=33 Score=30.67 Aligned_cols=44 Identities=16% Similarity=0.081 Sum_probs=34.5
Q ss_pred HHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 134 PLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 134 ~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
..+++.|+++||-+|-.+...-.++|.-|..+|++++|+.....
T Consensus 119 ~~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~V~vv~Da~a 162 (204)
T 3hu5_A 119 MLLRRRGVDTLLVSGTQYPNCIRGTAVDAFALDYDVVVVTDACS 162 (204)
T ss_dssp HHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHHhCCCCeEEEeeeccchHHHHHHHHHHHCCCEEEEehhhhC
Confidence 33467899999988866555667889999999999999887543
No 52
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A
Probab=47.85 E-value=39 Score=30.64 Aligned_cols=60 Identities=10% Similarity=-0.022 Sum_probs=40.9
Q ss_pred HHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccc---hhhhHHHHh-CCcE
Q 013383 135 LLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQIL---TGYNLISTI-YGKV 194 (444)
Q Consensus 135 ~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~---~~~~~~~~~-~GaV 194 (444)
..++.|+++|+-+|-.+...-.++|.-|..+|++++++........+ ......|+. +|++
T Consensus 137 ~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~Gy~v~vv~Da~~~~~~~~h~~aL~~m~~~~G~~ 200 (211)
T 3o94_A 137 RLRERRVSTVILTGVLTDISVLHTAIDAYNLGYDIEIVKPAVASIWPENHQFALGHFKNTLGAK 200 (211)
T ss_dssp HHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSCHHHHHHHHHHHHHTSCCE
T ss_pred HHHhCCCCeEEEEeeccChHHHHHHHHHHHCCCEEEEechhhcCCCHHHHHHHHHHHHHHCCcE
Confidence 34668999999888665556668899999999999998765332221 112234565 8873
No 53
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum}
Probab=47.16 E-value=50 Score=30.23 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=33.1
Q ss_pred HHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCC
Q 013383 135 LLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (444)
Q Consensus 135 ~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~ 176 (444)
.+++.|+++|+-+|-.+...-.++|.-|..+|++++|+....
T Consensus 151 ~L~~~gi~~lvv~G~~T~~CV~~Ta~dA~~~Gy~V~Vv~Da~ 192 (227)
T 3r2j_A 151 LLHSIGARRVFVCGVAYDFCVFFTAMDARKNGFSVVLLEDLT 192 (227)
T ss_dssp HHHHHTCCEEEEEESCTTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHHcCCCEEEEEEeccchHHHHHHHHHHHCCCEEEEEhHhh
Confidence 345679999998886655566688999999999999987653
No 54
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=46.71 E-value=1.8e+02 Score=26.99 Aligned_cols=35 Identities=17% Similarity=-0.123 Sum_probs=28.0
Q ss_pred CcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEec
Q 013383 293 RAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIAL 328 (444)
Q Consensus 293 ~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~ 328 (444)
.||.||++ +.+..++++...+++.|..+++++...
T Consensus 193 ~~d~v~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~ 227 (356)
T 3ipc_A 193 GVSIIYWG-GLHTEAGLIIRQAADQGLKAKLVSGDG 227 (356)
T ss_dssp TCCEEEEE-SCHHHHHHHHHHHHHHTCCCEEEECGG
T ss_pred CCCEEEEc-cCchHHHHHHHHHHHCCCCCcEEEecc
Confidence 68888875 466778899999999999988887543
No 55
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A
Probab=45.72 E-value=59 Score=29.55 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=26.5
Q ss_pred cCCCeEEEeCccc-chHHHHHHHHHHHhCCeEEEEecCC
Q 013383 139 HIVTDLVTCGGCQ-SAHATAVAVSCAERGLKSHLLLRGE 176 (444)
Q Consensus 139 ~g~~~Vvt~G~s~-GNhg~alA~aaa~~Gl~~~i~~~~~ 176 (444)
.|+..||| |+++ +--|.++|...++.|.+++++....
T Consensus 19 ~~k~vlIT-Gas~~~giG~~~a~~l~~~G~~v~~~~~~~ 56 (267)
T 3gdg_A 19 KGKVVVVT-GASGPKGMGIEAARGCAEMGAAVAITYASR 56 (267)
T ss_dssp TTCEEEET-TCCSSSSHHHHHHHHHHHTSCEEEECBSSS
T ss_pred CCCEEEEE-CCCCCCChHHHHHHHHHHCCCeEEEEeCCc
Confidence 34444555 7653 5689999999999999888776543
No 56
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=44.01 E-value=1.8e+02 Score=26.18 Aligned_cols=43 Identities=9% Similarity=0.000 Sum_probs=31.4
Q ss_pred HHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHhcCC-CCeEEEEec
Q 013383 279 LLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGL-PWEVTAIAL 328 (444)
Q Consensus 279 ~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~-~~~vigV~~ 328 (444)
...++++.. ++||.||+.... +.|+..++++.|. ++.|+|+.-
T Consensus 190 ~~~~~l~~~----~~~~ai~~~~d~---a~g~~~al~~~g~~di~vig~d~ 233 (304)
T 3gbv_A 190 MLDDFFREH----PDVKHGITFNSK---VYIIGEYLQQRRKSDFSLIGYDL 233 (304)
T ss_dssp HHHHHHHHC----TTCCEEEESSSC---THHHHHHHHHTTCCSCEEEEESC
T ss_pred HHHHHHHhC----CCeEEEEEcCcc---hHHHHHHHHHcCCCCcEEEEeCC
Confidence 445555542 478999877654 6799999999886 888988853
No 57
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=41.82 E-value=2e+02 Score=26.05 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=27.6
Q ss_pred CCcCEEEEeCCChhhHHHHHHHHHhcCC--CCeEEEEec
Q 013383 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL--PWEVTAIAL 328 (444)
Q Consensus 292 ~~~d~vvv~vGtGgt~aGl~~~~~~~g~--~~~vigV~~ 328 (444)
+.||.||+ .+...+.|+..++++.|. ++.|+|+..
T Consensus 186 ~~~~ai~~--~~d~~a~g~~~al~~~g~~~di~vig~d~ 222 (305)
T 3g1w_A 186 PNLAGIFA--TEANGGVGVGDAVRLESRAGEIQIISFDT 222 (305)
T ss_dssp TTEEEEEE--SSHHHHHHHHHHHHHTTCTTTSEEEEESC
T ss_pred CCceEEEE--CCCcchhhHHHHHHhcCCCCCeEEEEeCC
Confidence 46888876 456678899999999886 688998853
No 58
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=41.76 E-value=23 Score=30.59 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=22.8
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEE
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLL 172 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~ 172 (444)
|+-.|| |=.|.++|...++.|++++||
T Consensus 5 V~IIGa--GpaGL~aA~~La~~G~~V~v~ 31 (336)
T 3kkj_A 5 IAIIGT--GIAGLSAAQALTAAGHQVHLF 31 (336)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECc--CHHHHHHHHHHHHCCCCEEEE
Confidence 444576 679999999999999999988
No 59
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=38.25 E-value=1.7e+02 Score=26.77 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=25.9
Q ss_pred CCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCC
Q 013383 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (444)
Q Consensus 140 g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~ 176 (444)
|+..||| |++ +--|.++|...++.|.+++++-+..
T Consensus 6 ~k~~lVT-Gas-~GIG~aia~~la~~G~~V~~~~r~~ 40 (274)
T 3e03_A 6 GKTLFIT-GAS-RGIGLAIALRAARDGANVAIAAKSA 40 (274)
T ss_dssp TCEEEEE-TTT-SHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CcEEEEE-CCC-ChHHHHHHHHHHHCCCEEEEEeccc
Confidence 4445566 643 5789999999999999887776653
No 60
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3
Probab=38.24 E-value=46 Score=29.41 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=33.8
Q ss_pred HHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 135 LLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 135 ~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
.+++.|+++||-+|-.+...-.++|.-|..+|++++++.....
T Consensus 126 ~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~v~vv~Da~a 168 (199)
T 1j2r_A 126 QLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACS 168 (199)
T ss_dssp HHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHHCCCCEEEEEeeeccHHHHHHHHHHHHCCCEEEEehhhcC
Confidence 3466899999988865555666889999999999999877543
No 61
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A*
Probab=36.45 E-value=50 Score=29.41 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=32.6
Q ss_pred HHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 136 a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
+++.|+++||-+|-.+-..-.++|.-|..+|++++++.....
T Consensus 137 L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~~Gy~V~vv~Da~a 178 (207)
T 1nf9_A 137 MRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIA 178 (207)
T ss_dssp HHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHcCCCEEEEEeeecChHHHHHHHHHHHCCCEEEEeCcccC
Confidence 456899999988855444566889999999999998877543
No 62
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=35.86 E-value=2.7e+02 Score=27.65 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=33.5
Q ss_pred eEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc-EEEeCC
Q 013383 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPR 199 (444)
Q Consensus 143 ~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga-V~~v~~ 199 (444)
+||-+|. |..|..+|-.....|++++++-.. ++ .....+.+|. +++-+.
T Consensus 6 ~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d--~~----~v~~~~~~g~~vi~GDa 55 (413)
T 3l9w_A 6 RVIIAGF--GRFGQITGRLLLSSGVKMVVLDHD--PD----HIETLRKFGMKVFYGDA 55 (413)
T ss_dssp SEEEECC--SHHHHHHHHHHHHTTCCEEEEECC--HH----HHHHHHHTTCCCEESCT
T ss_pred eEEEECC--CHHHHHHHHHHHHCCCCEEEEECC--HH----HHHHHHhCCCeEEEcCC
Confidence 4666675 789999999999999998888543 21 1223456785 655443
No 63
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV}
Probab=35.40 E-value=52 Score=30.14 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=34.1
Q ss_pred HHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCC
Q 013383 134 PLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (444)
Q Consensus 134 ~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~ 176 (444)
..+++.|+++||-+|-.+...-.++|.-|..+|++++|+....
T Consensus 132 ~~L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~~Gy~V~vv~Da~ 174 (233)
T 3irv_A 132 TVLRARDVDTIIVCGTVTNVCCETTIRDGVHREYKVIALSDAN 174 (233)
T ss_dssp HHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHHhCCCCeEEEEeecccHHHHHHHHHHHHCCCEEEEechhh
Confidence 3346789999998886665566789999999999999987653
No 64
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3
Probab=35.13 E-value=58 Score=29.18 Aligned_cols=60 Identities=12% Similarity=0.010 Sum_probs=40.6
Q ss_pred HHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchh---hhHHHHhCCc
Q 013383 134 PLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTG---YNLISTIYGK 193 (444)
Q Consensus 134 ~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~---~~~~~~~~Ga 193 (444)
...++.|+++||-+|-.+-..-.++|.-|..+|++++++........+.. ....++..|+
T Consensus 98 ~~L~~~gi~~lvi~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~as~~~~~h~~al~~m~~~g~ 160 (208)
T 1yac_A 98 KAVKATGKKQLIIAGVVTEVCVAFPALSAIEEGFDVFVVTDASGTFNEITRHSAWDRMSQAGA 160 (208)
T ss_dssp HHHHHTTCSEEEEEEBSCCCCCHHHHHHHHHTTCEEEEETTSCBCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCCEEEEEEeccchhHHHHHHHHHHCCCEEEEECcccCCCCHHHHHHHHHHHHHcCC
Confidence 33467899999988865555567889999999999999877654432211 1223455676
No 65
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=35.09 E-value=2.8e+02 Score=25.72 Aligned_cols=35 Identities=9% Similarity=-0.121 Sum_probs=28.5
Q ss_pred CcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEec
Q 013383 293 RAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIAL 328 (444)
Q Consensus 293 ~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~ 328 (444)
.||.||++ +.+..+.++...+++.|.++++++...
T Consensus 194 ~~d~i~~~-~~~~~a~~~~~~~~~~g~~~p~~~~~~ 228 (358)
T 3hut_A 194 APQAIYLA-MAYEDAAPFLRALRARGSALPVYGSSA 228 (358)
T ss_dssp CCSEEEEE-SCHHHHHHHHHHHHHTTCCCCEEECGG
T ss_pred CCCEEEEc-cCchHHHHHHHHHHHcCCCCcEEecCc
Confidence 58887776 567788999999999999888887653
No 66
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens}
Probab=34.37 E-value=57 Score=29.11 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=34.6
Q ss_pred HHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 134 PLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 134 ~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
..+++.|+++||-+|-.+...-.++|.-|..+|++++|+.....
T Consensus 113 ~~L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~~Gy~V~vv~Da~a 156 (204)
T 3hb7_A 113 LYLKEEGIDTVVLTGVWTNVCVRSTATDALANAYKVITLSDGTA 156 (204)
T ss_dssp HHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHHHCCCCEEEEEeecccHHHHHHHHHHHHCCCEEEEechhcc
Confidence 33466899999988866655667889999999999999877543
No 67
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=34.27 E-value=2.7e+02 Score=25.34 Aligned_cols=34 Identities=21% Similarity=0.126 Sum_probs=25.4
Q ss_pred CCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 140 g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
|+..||| |++ +--|.++|...++.|.+++++-+.
T Consensus 11 ~k~~lVT-Gas-~gIG~aia~~la~~G~~V~~~~~~ 44 (286)
T 3uve_A 11 GKVAFVT-GAA-RGQGRSHAVRLAQEGADIIAVDIC 44 (286)
T ss_dssp TCEEEEE-STT-SHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEe-CCC-chHHHHHHHHHHHCCCeEEEEecc
Confidence 4445666 644 568999999999999998877554
No 68
>3lqy_A Putative isochorismatase hydrolase; structural genomics, PSI-2, PROT structure initiative, midwest center for structural genomic; 1.75A {Oleispira antarctica} SCOP: c.33.1.0
Probab=34.20 E-value=56 Score=28.72 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=33.8
Q ss_pred HHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 134 PLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 134 ~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
...++.|+++||-+|-.+...-.++|.-|..+|++++++.....
T Consensus 106 ~~L~~~gi~~lii~G~~T~~CV~~Ta~da~~~Gy~v~vv~Da~~ 149 (190)
T 3lqy_A 106 KVLDDAGIKKLVIVGAMTHMAIDAVTRAAEDLGYECAVAHDACA 149 (190)
T ss_dssp HHHHHC-CCEEEEEEECTTTHHHHHHHHHHHHTCEEEEEEEEEE
T ss_pred HHHHhCCCCEEEEEecCcChHHHHHHHHHHHCCCEEEEechhhc
Confidence 33467899999988866656667899999999999999877543
No 69
>3tg2_A Vibriobactin-specific isochorismatase; hydrolase; HET: ISC PGE; 1.10A {Vibrio cholerae} PDB: 3tb4_A*
Probab=34.07 E-value=53 Score=29.96 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=34.9
Q ss_pred HHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 134 PLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 134 ~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
..+++.|+++||-+|-.+...-.++|.-|..+|++++|+.....
T Consensus 131 ~~L~~~gi~~lii~G~~t~~CV~~Ta~da~~~Gy~v~vv~Da~a 174 (223)
T 3tg2_A 131 DWLRETGRDQLIITGVYAHIGILSTALDAFMFDIQPFVIGDGVA 174 (223)
T ss_dssp HHHHHHTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHHhcCcCceEEeecccChHHHHHHHHHHHCCCEEEEeCcccC
Confidence 33467899999988866655666899999999999999987543
No 70
>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A
Probab=33.71 E-value=3.7e+02 Score=26.81 Aligned_cols=42 Identities=5% Similarity=-0.116 Sum_probs=29.0
Q ss_pred cCCcEEEecCCCccHHHHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCCh
Q 013383 256 CRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTG 304 (444)
Q Consensus 256 ~~~~~~~ip~g~~np~~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtG 304 (444)
.+.....++.+..++.... .+..+|.++ + ..+|.+|-.++.+
T Consensus 110 ~G~~a~~i~~Dv~d~e~i~---~vi~~i~~~--~--G~IDiLVhS~A~~ 151 (401)
T 4ggo_A 110 EGLYSVTIDGDAFSDEIKA---QVIEEAKKK--G--IKFDLIVYSLASP 151 (401)
T ss_dssp HTCCEEEEESCTTSHHHHH---HHHHHHHHT--T--CCEEEEEECCCCS
T ss_pred cCCCceeEeCCCCCHHHHH---HHHHHHHHh--c--CCCCEEEEecccc
Confidence 3556677887777766543 345666655 3 3799999999976
No 71
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=32.82 E-value=2e+02 Score=23.32 Aligned_cols=31 Identities=3% Similarity=-0.011 Sum_probs=24.9
Q ss_pred eEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 143 ~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
+|+-+|. |..|..+|......|++++++-..
T Consensus 9 ~viIiG~--G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 9 HALLVGY--GRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEECc--CHHHHHHHHHHHHCCCCEEEEECC
Confidence 4555675 789999999999999998888653
No 72
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=32.56 E-value=2e+02 Score=27.63 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=26.3
Q ss_pred CCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 140 g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
|+..||| |++ +--|.++|...++.|.+++++.+...
T Consensus 45 gk~vlVT-Gas-~GIG~aia~~La~~Ga~Vvl~~r~~~ 80 (346)
T 3kvo_A 45 GCTVFIT-GAS-RGIGKAIALKAAKDGANIVIAAKTAQ 80 (346)
T ss_dssp TCEEEEE-TTT-SHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred CCEEEEe-CCC-hHHHHHHHHHHHHCCCEEEEEECChh
Confidence 4445555 643 56899999999999999888776543
No 73
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans}
Probab=32.39 E-value=61 Score=29.22 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=34.0
Q ss_pred HHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCC
Q 013383 134 PLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (444)
Q Consensus 134 ~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~ 176 (444)
..+++.|+++||-+|-.+...-.++|.-|..+|++++++....
T Consensus 102 ~~L~~~gi~~lvi~G~~T~~CV~~Ta~dA~~~Gy~V~vv~Da~ 144 (211)
T 3oqp_A 102 GWLAARQIDTLTVTGYMTHNCDASTINHAVHSGLAVEFLHDAT 144 (211)
T ss_dssp HHHHTTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHHhCCCCEEEEEeeccCHHHHHHHHHHHHCCCeEEEechhe
Confidence 3346789999998886655566689999999999999987653
No 74
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=32.05 E-value=2e+02 Score=26.38 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=25.7
Q ss_pred CCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCC
Q 013383 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (444)
Q Consensus 140 g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~ 176 (444)
|+..||| |++ +--|.++|...++.|.+++++-+..
T Consensus 9 ~k~vlVT-Gas-~GIG~aia~~l~~~G~~V~~~~r~~ 43 (285)
T 3sc4_A 9 GKTMFIS-GGS-RGIGLAIAKRVAADGANVALVAKSA 43 (285)
T ss_dssp TCEEEEE-SCS-SHHHHHHHHHHHTTTCEEEEEESCC
T ss_pred CCEEEEE-CCC-CHHHHHHHHHHHHCCCEEEEEECCh
Confidence 3344555 644 5689999999999999888777654
No 75
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli}
Probab=31.02 E-value=64 Score=30.35 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=33.9
Q ss_pred HHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 135 LLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 135 ~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
..++.|+++||-+|-.+.....++|.-|..+|++++++.....
T Consensus 139 ~L~~~gi~~lvi~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~a 181 (287)
T 2fq1_A 139 MLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALA 181 (287)
T ss_dssp HHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHHCCCCEEEEEEeCcchHHHHHHHHHHHCCCEEEEechhcc
Confidence 3467899999988855545667889999999999999877543
No 76
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} SCOP: c.33.1.0
Probab=30.80 E-value=74 Score=28.20 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=33.7
Q ss_pred HHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 135 LLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 135 ~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
..++.|+++||-+|-.+...-.++|.-|..+|++++++.....
T Consensus 120 ~L~~~gi~~lvi~G~~t~~CV~~Ta~~a~~~G~~v~v~~Da~~ 162 (199)
T 3txy_A 120 QLRRRGITDIVLTGIATNIGVESTAREAYENNYNVVVVSDAVS 162 (199)
T ss_dssp HHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEeeccCHHHHHHHHHHHHCCCEEEEecHhhc
Confidence 3466899999988865555666889999999999999877543
No 77
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A
Probab=30.54 E-value=75 Score=29.24 Aligned_cols=43 Identities=21% Similarity=0.242 Sum_probs=33.8
Q ss_pred HHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 135 LLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 135 ~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
.+++.|+++||-+|-.+...-.++|.-|..+|++++|+.....
T Consensus 153 ~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~V~vv~Da~a 195 (236)
T 3ot4_A 153 WLAQRGVQTLLVAGATTSGCVRASVVDAMSAGFRPLVLSDCVG 195 (236)
T ss_dssp HHHHTTCCEEEEEESCTTTHHHHHHHHHHHHTCEEEEEEEEEC
T ss_pred HHHHCCCCEEEEeCccCcHHHHHHHHHHHHCCCEEEEechhcC
Confidence 3466899999988865545556899999999999999877543
No 78
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum}
Probab=30.37 E-value=66 Score=28.53 Aligned_cols=42 Identities=21% Similarity=0.145 Sum_probs=33.2
Q ss_pred HHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 136 LEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 136 a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
.++.|+++||-+|-.+...-.++|.-|..+|++++++.....
T Consensus 108 L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~v~vv~Da~~ 149 (198)
T 3mcw_A 108 LRANGWLELVVAGVSTSNSVEATVRMAGNLGFAVCLAEDGCF 149 (198)
T ss_dssp HHHHTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHcCCCCeEEEEEcCcChHHHHHHHHHHHCCCEEEEeCcccc
Confidence 456799999988865555666889999999999999877543
No 79
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=30.26 E-value=3.4e+02 Score=25.24 Aligned_cols=35 Identities=14% Similarity=-0.058 Sum_probs=28.8
Q ss_pred CcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEec
Q 013383 293 RAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIAL 328 (444)
Q Consensus 293 ~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~ 328 (444)
.||.||++ +.+..+.++...++..|.++++++...
T Consensus 204 ~~d~v~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~ 238 (366)
T 3td9_A 204 NPDAIYIT-GYYPEIALISRQARQLGFTGYILAGDG 238 (366)
T ss_dssp CCSEEEEC-SCHHHHHHHHHHHHHTTCCSEEEECGG
T ss_pred CCCEEEEc-cchhHHHHHHHHHHHcCCCceEEeeCC
Confidence 68888874 678889999999999999988887644
No 80
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=29.34 E-value=1.8e+02 Score=26.29 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=37.2
Q ss_pred cchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEe
Q 013383 122 NGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (444)
Q Consensus 122 ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~ 173 (444)
--|-..-+...+..|++.|.+.||-.+ ++|-++..++-.. .|++.++|.
T Consensus 25 ~eNT~~tl~la~era~e~~Ik~iVVAS-~sG~TA~k~~e~~--~~i~lVvVT 73 (201)
T 1vp8_A 25 RENTEETLRLAVERAKELGIKHLVVAS-SYGDTAMKALEMA--EGLEVVVVT 73 (201)
T ss_dssp GGGHHHHHHHHHHHHHHHTCCEEEEEC-SSSHHHHHHHHHC--TTCEEEEEE
T ss_pred cccHHHHHHHHHHHHHHcCCCEEEEEe-CCChHHHHHHHHh--cCCeEEEEe
Confidence 347778888889999999999988754 6677765555533 788988888
No 81
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=29.27 E-value=1.1e+02 Score=27.79 Aligned_cols=35 Identities=11% Similarity=-0.136 Sum_probs=28.7
Q ss_pred CCcCEEEEeCCChhhHHHHHHHHHhcCC-CCeEEEEec
Q 013383 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL-PWEVTAIAL 328 (444)
Q Consensus 292 ~~~d~vvv~vGtGgt~aGl~~~~~~~g~-~~~vigV~~ 328 (444)
++||.||+. +...+.|+..++++.|. ++.|+|+.-
T Consensus 194 ~~~~ai~~~--~d~~a~g~~~al~~~g~~di~vig~d~ 229 (293)
T 3l6u_A 194 IPFDAVYCH--NDDIAMGVLEALKKAKISGKIVVGIDG 229 (293)
T ss_dssp CCCSEEEES--SHHHHHHHHHHHHHTTCCCCEEEEEEC
T ss_pred CCCCEEEEC--CchHHHHHHHHHHhCCCCCeEEEEecC
Confidence 578998875 66788899999999887 888888863
No 82
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3
Probab=28.70 E-value=75 Score=29.74 Aligned_cols=41 Identities=12% Similarity=0.236 Sum_probs=31.9
Q ss_pred HHHhcCCCeEEEeCcccchHHH-HHHHHHHHhCCeEEEEecCC
Q 013383 135 LLEDHIVTDLVTCGGCQSAHAT-AVAVSCAERGLKSHLLLRGE 176 (444)
Q Consensus 135 ~a~~~g~~~Vvt~G~s~GNhg~-alA~aaa~~Gl~~~i~~~~~ 176 (444)
.+++.|+++||-+|-. .|.|+ ++|.-|..+|++++|+....
T Consensus 158 ~Lr~~gi~~lvI~Gv~-T~~CV~~Ta~dA~~~Gy~V~Vv~DA~ 199 (264)
T 1nba_A 158 FLTSNRIDTLIVTGAT-AAGCVRHTVEDAIAKGFRPIIPRETI 199 (264)
T ss_dssp HHHHTTCCEEEEEEEC-TTTHHHHHHHHHHHHTCEEEEEGGGE
T ss_pred HHHhCCCCEEEEEecC-cCCHHHHHHHHHHHCCCEEEEecccc
Confidence 3466899999988744 45555 89999999999999887653
No 83
>4h17_A Hydrolase, isochorismatase family; rossmann-like fold, structural genomics, joint center for ST genomics, JCSG; 1.60A {Pseudomonas putida KT2440}
Probab=28.66 E-value=72 Score=28.30 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=33.4
Q ss_pred HHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 135 LLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 135 ~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
..++.|+++||-+|-.+...-.++|.-|..+|++++++.....
T Consensus 117 ~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~V~vv~Da~a 159 (197)
T 4h17_A 117 TLQELGHLDLIVCGFMSHSSVSTTVRRAKDYGYRCTLVEDASA 159 (197)
T ss_dssp HHHHHTCSEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHhcCCCEEEEEeeCcCHHHHHHHHHHHHCCCEEEEeCcccc
Confidence 3466799999988855555666889999999999999877543
No 84
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis}
Probab=28.36 E-value=71 Score=27.38 Aligned_cols=42 Identities=14% Similarity=0.103 Sum_probs=31.6
Q ss_pred HHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCC
Q 013383 135 LLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (444)
Q Consensus 135 ~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~ 176 (444)
..++.|.++||-+|-.+...-.++|.-|..+|++++++....
T Consensus 95 ~L~~~gi~~lvv~G~~T~~CV~~Ta~da~~~Gy~v~v~~Da~ 136 (167)
T 2a67_A 95 LLTEQAVQTLEIAGVQTEFCVDTTIRMAHGLGYTCLMTPKTT 136 (167)
T ss_dssp HHHHTTCCEEEEEEECTTTHHHHHHHHHHHHTCEEEECTTCE
T ss_pred HHHHCCCCEEEEEecccChHHHHHHHHHHHCCCEEEEechhh
Confidence 345689999998885554455688899999999988876543
No 85
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=27.79 E-value=53 Score=31.16 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=23.1
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEe
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~ 173 (444)
|+-.|| |=.|.++|...++.|++++|+=
T Consensus 7 ViIVGa--GpaGl~~A~~La~~G~~V~v~E 34 (397)
T 3oz2_A 7 VLVVGG--GPGGSTAARYAAKYGLKTLMIE 34 (397)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEECc--CHHHHHHHHHHHHCCCcEEEEe
Confidence 444566 6799999999999999998884
No 86
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=27.39 E-value=53 Score=29.47 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=25.4
Q ss_pred eEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 143 ~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
.|+-.|| |..|..+|..+++.|++++++-+.
T Consensus 5 dVvVVGg--G~aGl~aA~~la~~g~~v~lie~~ 35 (232)
T 2cul_A 5 QVLIVGA--GFSGAETAFWLAQKGVRVGLLTQS 35 (232)
T ss_dssp SEEEECC--SHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEECc--CHHHHHHHHHHHHCCCCEEEEecC
Confidence 3454576 789999999999999999988664
No 87
>1x9g_A Putative MAR1; structural genomics, protein structure initiative, SGPP, PSI structural genomics of pathogenic protozoa consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3 PDB: 1xn4_A
Probab=26.78 E-value=72 Score=28.50 Aligned_cols=38 Identities=16% Similarity=0.010 Sum_probs=31.1
Q ss_pred CCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 140 g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
|+++||-+|-.+...-.++|.-|..+|++++++.....
T Consensus 106 gi~~lvi~Gv~T~~CV~~Ta~dA~~~Gy~V~Vv~Da~a 143 (200)
T 1x9g_A 106 DVDNAVVFGIEGHACILQTVADLLDMNKRVFLPKDGLG 143 (200)
T ss_dssp TCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEGGGEE
T ss_pred CCCEEEEEEEecCcHHHHHHHHHHhCCCEEEEeCCCcC
Confidence 99999988866655667899999999999998876543
No 88
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=25.65 E-value=85 Score=26.41 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=25.5
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEecCC
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLLRGE 176 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~ 176 (444)
|+-.|| |..|..+|...++.|++++++-+..
T Consensus 4 vvIIGg--G~~Gl~~A~~l~~~g~~v~lie~~~ 34 (180)
T 2ywl_A 4 VIVVGG--GPSGLSAALFLARAGLKVLVLDGGR 34 (180)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred EEEECC--CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 444576 7799999999999999999997653
No 89
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} SCOP: c.33.1.0
Probab=25.47 E-value=88 Score=28.39 Aligned_cols=44 Identities=18% Similarity=0.119 Sum_probs=34.0
Q ss_pred HHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 134 PLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 134 ~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
...++.|+++||-+|-.+...-.++|.-|..+|++++|+.....
T Consensus 144 ~~L~~~gi~~lii~G~~T~~CV~~Ta~da~~~Gy~v~vv~Da~~ 187 (226)
T 3kl2_A 144 FILRSKGVDTIVLGGFLTNCCVESTMRTGYERGFRVITLTDCVA 187 (226)
T ss_dssp HHHHHHTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHhCCCCCcEEEeccCcchHHHHHHHHHHHCCCEEEEechhhc
Confidence 33466799999988865555666889999999999999876533
No 90
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=25.47 E-value=3.7e+02 Score=24.17 Aligned_cols=44 Identities=11% Similarity=-0.076 Sum_probs=31.7
Q ss_pred HHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHhcCC-----CCeEEEEec
Q 013383 279 LLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGL-----PWEVTAIAL 328 (444)
Q Consensus 279 ~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~-----~~~vigV~~ 328 (444)
...+++++. ++||.||+. +...+.|+..++++.|. ++.|+|+..
T Consensus 178 ~~~~~l~~~----~~~~ai~~~--~d~~A~g~~~al~~~g~~vP~~dv~vig~D~ 226 (297)
T 3rot_A 178 RVKSYFKIH----PETNIIFCL--TSQALDPLGQMLLHPDRYDFNYQPQVYSFDK 226 (297)
T ss_dssp HHHHHHHHC----TTCCEEEES--SHHHHHHHHHHHHSHHHHTCCCCCEEEEECC
T ss_pred HHHHHHHhC----CCCCEEEEc--CCcchHHHHHHHHhcCCccCCCceEEEEeCC
Confidence 445555442 578988874 47788999999988763 788999854
No 91
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=25.42 E-value=64 Score=30.84 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=23.5
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEEe
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~ 173 (444)
|+-.|+ |=.|.++|.+.++.|++++||=
T Consensus 4 V~IVGa--GpaGl~~A~~L~~~G~~v~v~E 31 (412)
T 4hb9_A 4 VGIIGA--GIGGTCLAHGLRKHGIKVTIYE 31 (412)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCEEEEEC
T ss_pred EEEECc--CHHHHHHHHHHHhCCCCEEEEe
Confidence 555576 6799999999999999999883
No 92
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=25.23 E-value=3.6e+02 Score=24.74 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=25.1
Q ss_pred CCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 140 g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
|+..||| |++ |--|.++|...++.|.+++++.+.
T Consensus 47 gk~vlVT-Gas-~GIG~aia~~la~~G~~V~~~~r~ 80 (291)
T 3ijr_A 47 GKNVLIT-GGD-SGIGRAVSIAFAKEGANIAIAYLD 80 (291)
T ss_dssp TCEEEEE-TTT-SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEe-CCC-cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4445666 643 568999999999999998777654
No 93
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=25.09 E-value=2.8e+02 Score=24.99 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=24.9
Q ss_pred CCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 140 g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
|++.||| |+ +|.-|.++|...++.|.+++++.+.
T Consensus 29 ~k~vlIT-Ga-s~gIG~~la~~l~~~G~~V~~~~r~ 62 (271)
T 4iin_A 29 GKNVLIT-GA-SKGIGAEIAKTLASMGLKVWINYRS 62 (271)
T ss_dssp CCEEEET-TC-SSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEE-CC-CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3334554 64 3568999999999999998877664
No 94
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=24.96 E-value=3e+02 Score=25.19 Aligned_cols=33 Identities=27% Similarity=0.186 Sum_probs=23.9
Q ss_pred CCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEec
Q 013383 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (444)
Q Consensus 140 g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~ 174 (444)
++..||| |++ |--|.++|...++.|.+++++-+
T Consensus 25 ~k~~lVT-Gas-~GIG~~ia~~la~~G~~V~~~~r 57 (281)
T 3v2h_A 25 TKTAVIT-GST-SGIGLAIARTLAKAGANIVLNGF 57 (281)
T ss_dssp TCEEEEE-TCS-SHHHHHHHHHHHHTTCEEEEECC
T ss_pred CCEEEEe-CCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 4445666 643 56899999999999998776644
No 95
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=24.80 E-value=65 Score=30.25 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=25.0
Q ss_pred eEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 143 ~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
.|+-.|| |-.|.++|+.+++.|++++|+=..
T Consensus 6 dvvIIG~--G~~Gl~~A~~La~~G~~V~vlE~~ 36 (369)
T 3dme_A 6 DCIVIGA--GVVGLAIARALAAGGHEVLVAEAA 36 (369)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECC--CHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4555676 679999999999999998887544
No 96
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=24.75 E-value=64 Score=31.14 Aligned_cols=31 Identities=39% Similarity=0.484 Sum_probs=24.7
Q ss_pred eEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 143 ~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
.|+-.|| |-.|.++|+.+++.|++++|+=..
T Consensus 6 DVvIIGa--G~~Gl~~A~~La~~G~~V~vlE~~ 36 (397)
T 2oln_A 6 DVVVVGG--GPVGLATAWQVAERGHRVLVLERH 36 (397)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEECC--CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3555676 779999999999999998777543
No 97
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=24.55 E-value=68 Score=29.78 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=23.2
Q ss_pred eEEEeCcccchHHHHHHHHHHHhCCeEEEEe
Q 013383 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (444)
Q Consensus 143 ~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~ 173 (444)
.|+-.|| |-.|.+.|..+++.|++++++=
T Consensus 8 DVvIIGa--GpAGlsAA~~lar~g~~v~lie 36 (304)
T 4fk1_A 8 DCAVIGA--GPAGLNASLVLGRARKQIALFD 36 (304)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEECC--CHHHHHHHHHHHHCCCCEEEEe
Confidence 3555576 5689999999999999998884
No 98
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=24.53 E-value=1.2e+02 Score=25.15 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=25.6
Q ss_pred CeEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 142 ~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
.+|+-+|+ |.-|..+|...+..|.+++++-+.
T Consensus 20 ~~v~IiG~--G~iG~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 20 KYIVIFGC--GRLGSLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CcEEEECC--CHHHHHHHHHHHhCCCeEEEEECC
Confidence 45666675 789999999999999988777553
No 99
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=24.52 E-value=59 Score=29.97 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=23.5
Q ss_pred eEEEeCcccchHHHHHHHHHHHhCCeEEEEe
Q 013383 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLL 173 (444)
Q Consensus 143 ~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~ 173 (444)
.|+-.|| |-.|.+.|..++++|++++++=
T Consensus 6 DvvIIG~--GpAGl~AA~~la~~g~~v~liE 34 (314)
T 4a5l_A 6 DVVIIGS--GPAAHTAAIYLGRSSLKPVMYE 34 (314)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCCEEEC
T ss_pred cEEEECC--CHHHHHHHHHHHHCCCCEEEEe
Confidence 3555676 5699999999999999998883
No 100
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=24.43 E-value=93 Score=29.82 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=24.5
Q ss_pred eEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 143 ~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
+|+-.||++ .|..+|.+|+++|++++++-+.
T Consensus 3 ~I~ilGgg~--~g~~~~~~Ak~~G~~vv~vd~~ 33 (363)
T 4ffl_A 3 TICLVGGKL--QGFEAAYLSKKAGMKVVLVDKN 33 (363)
T ss_dssp EEEEECCSH--HHHHHHHHHHHTTCEEEEEESC
T ss_pred EEEEECCCH--HHHHHHHHHHHCCCEEEEEeCC
Confidence 455557644 8999999999999999988543
No 101
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Probab=23.82 E-value=2e+02 Score=27.22 Aligned_cols=55 Identities=13% Similarity=0.202 Sum_probs=35.3
Q ss_pred hHHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc
Q 013383 132 LLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK 193 (444)
Q Consensus 132 ~l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga 193 (444)
++..+...|-+.|+-.|| .|.-|.+.+..|+.+|.+++++.+.. + +....+.+|+
T Consensus 156 ~~~~~~~~g~~~vli~gg-~g~vG~~a~qla~~~Ga~Vi~~~~~~--~----~~~~~~~~Ga 210 (349)
T 3pi7_A 156 MFDIVKQEGEKAFVMTAG-ASQLCKLIIGLAKEEGFRPIVTVRRD--E----QIALLKDIGA 210 (349)
T ss_dssp HHHHHHHHCCSEEEESST-TSHHHHHHHHHHHHHTCEEEEEESCG--G----GHHHHHHHTC
T ss_pred HHHHHhhCCCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCH--H----HHHHHHHcCC
Confidence 344444556456665543 46799999999999999776665432 1 2234567897
No 102
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=23.73 E-value=4.7e+02 Score=24.70 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=26.2
Q ss_pred CcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCCh
Q 013383 293 RAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTI 332 (444)
Q Consensus 293 ~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~~ 332 (444)
.++..|+..++|.+..+++.+.+.+|. +++.|.+...+
T Consensus 71 ~~~~~vv~aSsGN~g~alA~aa~~~G~--~~~iv~p~~~~ 108 (325)
T 3dwg_A 71 RPGATILEPTSGNTGISLAMAARLKGY--RLICVMPENTS 108 (325)
T ss_dssp CTTCEEEEECSSHHHHHHHHHHHHHTC--EEEEEEESSSC
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHcCC--cEEEEECCCCC
Confidence 343445556789999999999888874 55666776643
No 103
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=23.45 E-value=1.7e+02 Score=26.60 Aligned_cols=37 Identities=11% Similarity=-0.013 Sum_probs=29.7
Q ss_pred CCcCEEEEeCCChhhHHHHHHHHHhcCC---CCeEEEEec
Q 013383 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL---PWEVTAIAL 328 (444)
Q Consensus 292 ~~~d~vvv~vGtGgt~aGl~~~~~~~g~---~~~vigV~~ 328 (444)
+++|.+++-+.+...+.|+..++++.|. ++.|+|+.-
T Consensus 194 ~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di~vvG~D~ 233 (306)
T 8abp_A 194 PEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 233 (306)
T ss_dssp TTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGEEEEEESS
T ss_pred CCCceEEEEeCCcHHHHHHHHHHHHcCCCCCceEEEEeCc
Confidence 5788866667788889999999999886 577888754
No 104
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=23.44 E-value=1.6e+02 Score=26.72 Aligned_cols=35 Identities=14% Similarity=-0.053 Sum_probs=28.1
Q ss_pred CCcCEEEEeCCChhhHHHHHHHHHhcCC----CCeEEEEec
Q 013383 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIAL 328 (444)
Q Consensus 292 ~~~d~vvv~vGtGgt~aGl~~~~~~~g~----~~~vigV~~ 328 (444)
++||.||+. +...+.|+..++++.|. ++.|+|+.-
T Consensus 184 ~~~~ai~~~--~d~~A~g~~~al~~~g~~vP~di~vig~D~ 222 (289)
T 3k9c_A 184 TPPTAVVAF--NDRCATGVLDLLVRSGRDVPADISVVGYDD 222 (289)
T ss_dssp SCCSEEEES--SHHHHHHHHHHHHHTTCCTTTTCEEEEEEC
T ss_pred CCCCEEEEC--ChHHHHHHHHHHHHcCCCCCCceEEEEECC
Confidence 578999875 56788899999998875 577998864
No 105
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=23.29 E-value=4.4e+02 Score=24.20 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=25.5
Q ss_pred CCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 140 g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
|+..||| |++ +--|.++|...++.|.+++++-+.
T Consensus 28 gk~~lVT-Gas-~GIG~aia~~la~~G~~V~~~~~~ 61 (299)
T 3t7c_A 28 GKVAFIT-GAA-RGQGRSHAITLAREGADIIAIDVC 61 (299)
T ss_dssp TCEEEEE-STT-SHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEE-CCC-CHHHHHHHHHHHHCCCEEEEEecc
Confidence 4445666 644 468999999999999998887654
No 106
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi}
Probab=23.27 E-value=67 Score=28.81 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=34.6
Q ss_pred HHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCC
Q 013383 134 PLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQ 177 (444)
Q Consensus 134 ~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~ 177 (444)
...++.|+++||-+|-.+...-.++|.-|..+|++++++.....
T Consensus 103 ~~L~~~gi~~lvi~Gv~T~~CV~~Ta~dA~~~Gy~V~vv~Da~a 146 (204)
T 1yzv_A 103 PLVDLPEVEQVVLWGFETHVCILQTAAALLDMKKKVVIAVDGCG 146 (204)
T ss_dssp HHHSSTTEEEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHHhCCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEECCccC
Confidence 34466799999988866655667899999999999999887543
No 107
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=23.20 E-value=4.5e+02 Score=24.33 Aligned_cols=37 Identities=16% Similarity=0.020 Sum_probs=28.6
Q ss_pred CcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccC
Q 013383 293 RAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVD 330 (444)
Q Consensus 293 ~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~ 330 (444)
.||.||++ +.+..+.++...+++.|..++++++....
T Consensus 214 ~~dav~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~~~ 250 (386)
T 3sg0_A 214 KPDAVFIA-SAGTPAVLPQKALRERGFKGAIYQTHGVA 250 (386)
T ss_dssp CCSEEEEE-CCSGGGHHHHHHHHHTTCCSEEECCGGGC
T ss_pred CCCEEEEe-cCcchHHHHHHHHHHcCCCCcEEeccccC
Confidence 68888775 45677889999999999988888765433
No 108
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=22.99 E-value=76 Score=29.41 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=22.6
Q ss_pred EEEeCcccchHHHHHHHHHHHhCCeEEEE
Q 013383 144 LVTCGGCQSAHATAVAVSCAERGLKSHLL 172 (444)
Q Consensus 144 Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~ 172 (444)
|+-.|| |-.|.+.|..++++|++++|+
T Consensus 9 vvIIG~--GpAGl~aA~~l~~~g~~V~li 35 (312)
T 4gcm_A 9 IAIIGA--GPAGMTAAVYASRANLKTVMI 35 (312)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEE
Confidence 444576 568999999999999999888
No 109
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=22.72 E-value=3.4e+02 Score=24.98 Aligned_cols=33 Identities=30% Similarity=0.286 Sum_probs=23.8
Q ss_pred CCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEec
Q 013383 140 IVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (444)
Q Consensus 140 g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~ 174 (444)
|+..||| |++ |--|.++|...++.|.+++++..
T Consensus 49 ~k~vlVT-Gas-~GIG~aia~~la~~G~~V~~~~~ 81 (294)
T 3r3s_A 49 DRKALVT-GGD-SGIGRAAAIAYAREGADVAINYL 81 (294)
T ss_dssp TCEEEEE-TTT-SHHHHHHHHHHHHTTCEEEEECC
T ss_pred CCEEEEe-CCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 4445666 643 56899999999999998776544
No 110
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=22.37 E-value=84 Score=28.40 Aligned_cols=36 Identities=11% Similarity=-0.015 Sum_probs=23.5
Q ss_pred EEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCC
Q 013383 296 KFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDT 331 (444)
Q Consensus 296 ~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~ 331 (444)
.+=+++|+|....-++..+...++..+|+||+....
T Consensus 85 VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~ 120 (236)
T 2bm8_A 85 IVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLS 120 (236)
T ss_dssp EEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCT
T ss_pred EEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChH
Confidence 444566666666655554433467789999998664
No 111
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=22.35 E-value=71 Score=29.25 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=29.7
Q ss_pred CcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCC
Q 013383 293 RAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDT 331 (444)
Q Consensus 293 ~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~ 331 (444)
.+...|+.+|+|+-..++..+. .++..+|+||+....
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~--~~~~~~V~avDi~~~ 50 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVE--RGQIKSAIAGEVVEG 50 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHH--TTSEEEEEEEESSHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHH--hCCCCEEEEEECCHH
Confidence 4668899999999998887654 577789999997553
No 112
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=22.17 E-value=80 Score=30.62 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=25.1
Q ss_pred eEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 143 ~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
+|+-.|| |=.|.++|...++.|++++|+=..
T Consensus 25 dV~IVGa--G~aGl~~A~~La~~G~~V~v~E~~ 55 (407)
T 3rp8_A 25 KAIVIGA--GIGGLSAAVALKQSGIDCDVYEAV 55 (407)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4555676 679999999999999999888543
No 113
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=21.77 E-value=4.2e+02 Score=23.49 Aligned_cols=34 Identities=6% Similarity=-0.115 Sum_probs=28.3
Q ss_pred CcCEEEEeCCChhhHHHHHHHHHhcCC-CCeEEEEec
Q 013383 293 RAIKFVVDAGTGTTAVGLGLGAICLGL-PWEVTAIAL 328 (444)
Q Consensus 293 ~~d~vvv~vGtGgt~aGl~~~~~~~g~-~~~vigV~~ 328 (444)
+||.||+. +...+.|+..++++.|. ++.|+|+..
T Consensus 191 ~~~ai~~~--~d~~a~g~~~al~~~g~~di~vvg~d~ 225 (291)
T 3l49_A 191 DVGAIWAC--WDVPMIGATQALQAAGRTDIRTYGVDG 225 (291)
T ss_dssp SCCEEEES--SHHHHHHHHHHHHHTTCCSCEEEEEEC
T ss_pred CcCEEEEC--CCchHHHHHHHHHHcCCCCeEEEEecC
Confidence 68999864 67789999999999887 888888864
No 114
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=21.74 E-value=80 Score=29.39 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=24.4
Q ss_pred eEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 143 ~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
.|+-.|| |=.|.++|...++.|++++|+=..
T Consensus 4 dV~IIGa--G~~Gl~~A~~L~~~G~~V~vlE~~ 34 (336)
T 1yvv_A 4 PIAIIGT--GIAGLSAAQALTAAGHQVHLFDKS 34 (336)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred eEEEECC--cHHHHHHHHHHHHCCCcEEEEECC
Confidence 3454576 679999999999999998887443
No 115
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}
Probab=21.71 E-value=2.3e+02 Score=27.33 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=35.8
Q ss_pred hHHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecCCCCccchhhhHHHHhCCc
Q 013383 132 LLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRGEQPQILTGYNLISTIYGK 193 (444)
Q Consensus 132 ~l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~~~~~~~~~~~~~~~~~Ga 193 (444)
++..+.+.|.+-+|. |+..|.-|.+.+..|+.+|.+++++.+.. .+....+.+|+
T Consensus 163 ~~~~~~~~g~~vlV~-gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~------~~~~~~~~lGa 217 (379)
T 3iup_A 163 MVETMRLEGHSALVH-TAAASNLGQMLNQICLKDGIKLVNIVRKQ------EQADLLKAQGA 217 (379)
T ss_dssp HHHHHHHTTCSCEEE-SSTTSHHHHHHHHHHHHHTCCEEEEESSH------HHHHHHHHTTC
T ss_pred HHHHhccCCCEEEEE-CCCCCHHHHHHHHHHHHCCCEEEEEECCH------HHHHHHHhCCC
Confidence 344445666555554 32346799999999999999876665431 12335577996
No 116
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=21.64 E-value=73 Score=31.85 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=23.7
Q ss_pred eEEEeCcccchHHHHHHHHHHHhCCeEEEE
Q 013383 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLL 172 (444)
Q Consensus 143 ~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~ 172 (444)
+||-.|| |-.|.+.|+..++.|++++|+
T Consensus 3 ~VvVIGa--G~~GL~aA~~La~~G~~V~Vl 30 (501)
T 4dgk_A 3 PTTVIGA--GFGGLALAIRLQAAGIPVLLL 30 (501)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEECC--cHHHHHHHHHHHHCCCcEEEE
Confidence 4555676 779999999999999999887
No 117
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=21.62 E-value=85 Score=30.16 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=25.8
Q ss_pred CeEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 142 TDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 142 ~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
.+|+-.|| |-.|.++|...++.|++++|+=..
T Consensus 12 ~dVvIVGa--G~aGl~~A~~L~~~G~~v~viE~~ 43 (379)
T 3alj_A 12 RRAEVAGG--GFAGLTAAIALKQNGWDVRLHEKS 43 (379)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CeEEEECC--CHHHHHHHHHHHHCCCCEEEEecC
Confidence 35666676 679999999999999999888544
No 118
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=21.52 E-value=82 Score=30.00 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=25.0
Q ss_pred eEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 143 ~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
.|+-.|| |-.|.++|+.+++.|++++|+=..
T Consensus 19 dvvIIGg--G~~Gl~~A~~La~~G~~V~llE~~ 49 (382)
T 1ryi_A 19 EAVVIGG--GIIGSAIAYYLAKENKNTALFESG 49 (382)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECc--CHHHHHHHHHHHhCCCcEEEEeCC
Confidence 4555676 679999999999999998887544
No 119
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=21.46 E-value=2e+02 Score=25.85 Aligned_cols=34 Identities=6% Similarity=0.081 Sum_probs=27.3
Q ss_pred CCcCEEEEeCCChhhHHHHHHHHHhcCC----CCeEEEEe
Q 013383 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIA 327 (444)
Q Consensus 292 ~~~d~vvv~vGtGgt~aGl~~~~~~~g~----~~~vigV~ 327 (444)
+.||.||+. +...+.|+..++++.|. ++.|+|+.
T Consensus 191 ~~~~ai~~~--~d~~a~g~~~al~~~g~~vP~di~vig~d 228 (292)
T 3k4h_A 191 QPPTAIMAT--DDLIGLGVLSALSKKGFVVPKDVSIVSFN 228 (292)
T ss_dssp SCCSEEEES--SHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred CCCcEEEEc--ChHHHHHHHHHHHHhCCCCCCeEEEEEec
Confidence 578999865 56788899999999874 56788875
No 120
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=21.39 E-value=1.1e+02 Score=27.14 Aligned_cols=98 Identities=9% Similarity=0.194 Sum_probs=57.5
Q ss_pred CceeecccchhhHHHHHHh-hhhcccCCCccccccccccccccccCCCCCccccccccccccCCCccccCCCCeEEEEeC
Q 013383 36 QGICNVRMSGEELLSRLLD-RKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRD 114 (444)
Q Consensus 36 ~~~~~~~~~~e~~~~~l~~-~~w~~~~~~~~~~~~~~~~~~~~~g~TPL~~~~~l~~l~~~~g~~~~~~~~g~~l~vKrE 114 (444)
--+-+++++..+++.+|.. ..+ ..++. -+.| +..+.. +..+.+.++. ..++|.
T Consensus 71 iPVV~I~~s~~Dil~al~~a~~~-----~~kIa--vvg~------~~~~~~---~~~~~~ll~~-------~i~~~~--- 124 (196)
T 2q5c_A 71 IPSISIKVTRFDTMRAVYNAKRF-----GNELA--LIAY------KHSIVD---KHEIEAMLGV-------KIKEFL--- 124 (196)
T ss_dssp SCEEEECCCHHHHHHHHHHHGGG-----CSEEE--EEEE------SSCSSC---HHHHHHHHTC-------EEEEEE---
T ss_pred CCEEEEcCCHhHHHHHHHHHHhh-----CCcEE--EEeC------cchhhH---HHHHHHHhCC-------ceEEEE---
Confidence 4577888999999988886 222 11222 1222 333445 5555555542 112221
Q ss_pred CCCCCCCcchhhHHHHhhHHHHHhcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 115 DLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 115 dl~~p~~ggnK~Rkl~~~l~~a~~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
...+ --+...+.++++.|++.|| |+ .-+.-.|+++|++++++..+
T Consensus 125 -~~~~-------~e~~~~i~~l~~~G~~vvV--G~------~~~~~~A~~~Gl~~vli~sg 169 (196)
T 2q5c_A 125 -FSSE-------DEITTLISKVKTENIKIVV--SG------KTVTDEAIKQGLYGETINSG 169 (196)
T ss_dssp -ECSG-------GGHHHHHHHHHHTTCCEEE--EC------HHHHHHHHHTTCEEEECCCC
T ss_pred -eCCH-------HHHHHHHHHHHHCCCeEEE--CC------HHHHHHHHHcCCcEEEEecC
Confidence 1111 2234567888999999888 32 23467789999999887664
No 121
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=21.24 E-value=83 Score=30.02 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=24.8
Q ss_pred eEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 143 ~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
.|+-.|| |=.|.++|...++.|++++|+=..
T Consensus 6 dVvIvG~--G~aGl~~A~~La~~G~~V~l~E~~ 36 (397)
T 3cgv_A 6 DVLVVGG--GPGGSTAARYAAKYGLKTLMIEKR 36 (397)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECc--CHHHHHHHHHHHHCCCCEEEEeCC
Confidence 3555576 669999999999999998888544
No 122
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=21.07 E-value=2.1e+02 Score=26.43 Aligned_cols=91 Identities=13% Similarity=0.001 Sum_probs=44.6
Q ss_pred CcEEEecCCCccHH-HHHHHHHHHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHhcCCCCeEEEEeccCC-hh--
Q 013383 258 KKVLIVNEGAGDAV-ALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDT-ID-- 333 (444)
Q Consensus 258 ~~~~~ip~g~~np~-~~~G~~t~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~~-~~-- 333 (444)
.+.+++|....+.. ........+-+..++. . .++ -++.+|+|.|+..++..+......-.+.-|+..|. ..
T Consensus 27 ~~v~Vvp~~~~~~~~~~~~lg~~aA~~L~~~-l---~~~-~vIGv~wG~Tl~~v~~~l~~~~~~~~~~~V~l~Gg~~~~~ 101 (266)
T 3efb_A 27 KDVVVVSGNDEDEETQLAMMGLHGAQLLDRL-L---EPG-DIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKL 101 (266)
T ss_dssp SEEEEECCCSCCHHHHHHHHHHHHHHHHHHH-C---CTT-CEEEECCSHHHHHHHHTCCCCSSCCCCEEEESBCBCTTSS
T ss_pred CEEEEEcCCCCChHHHHHHHHHHHHHHHHHh-C---CCC-CEEEEcccHHHHHHHHhcCccCCCCCeEEEEcCCCCCCCC
Confidence 46788887433332 2222222333333332 1 223 36888999999988876542211124555676654 21
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 013383 334 GYKQQEKNLISEFKRLFGFL 353 (444)
Q Consensus 334 ~~~~~~~~l~~~~~~~i~~~ 353 (444)
........+...+++.++..
T Consensus 102 ~~~~~~n~i~~~lA~~~~~~ 121 (266)
T 3efb_A 102 ESRYHVNTLTYSAAAKLKGE 121 (266)
T ss_dssp CGGGCHHHHHHHHHHHTTCE
T ss_pred ccccCHHHHHHHHHHHhCCe
Confidence 01111123455566655543
No 123
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=20.97 E-value=86 Score=33.48 Aligned_cols=35 Identities=14% Similarity=0.033 Sum_probs=22.3
Q ss_pred EEE--EeCCChhhHHHHHHHHHhcCCCCeEEEEeccC
Q 013383 296 KFV--VDAGTGTTAVGLGLGAICLGLPWEVTAIALVD 330 (444)
Q Consensus 296 ~vv--v~vGtGgt~aGl~~~~~~~g~~~~vigV~~~~ 330 (444)
.|| |.+|+|-+..-.+.+.+..+..+|||+||...
T Consensus 359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp 395 (637)
T 4gqb_A 359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP 395 (637)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 455 45555555444555555567778999999754
No 124
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=20.83 E-value=1.7e+02 Score=27.21 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=28.1
Q ss_pred CCcCEEEEeCCChhhHHHHHHHHHhcCC----CCeEEEEec
Q 013383 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIAL 328 (444)
Q Consensus 292 ~~~d~vvv~vGtGgt~aGl~~~~~~~g~----~~~vigV~~ 328 (444)
++||.||+ .+...+.|+..++++.|. ++.|+|+.-
T Consensus 241 ~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~di~vvg~D~ 279 (338)
T 3dbi_A 241 AKFSALVA--SNDDMAIGAMKALHERGVAVPEQVSVIGFDD 279 (338)
T ss_dssp CCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEEESC
T ss_pred CCCeEEEE--CChHHHHHHHHHHHHcCCCCCCCeEEEEECC
Confidence 57999997 456788899999999885 577888863
No 125
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=20.82 E-value=1.8e+02 Score=26.09 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=27.8
Q ss_pred CCcCEEEEeCCChhhHHHHHHHHHhcCC----CCeEEEEe
Q 013383 292 KRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIA 327 (444)
Q Consensus 292 ~~~d~vvv~vGtGgt~aGl~~~~~~~g~----~~~vigV~ 327 (444)
+.||.||+. +...+.|+..++++.|. ++.|+|+.
T Consensus 187 ~~~~ai~~~--~d~~a~g~~~al~~~g~~vP~di~vig~d 224 (289)
T 3g85_A 187 NTPKALFCN--SDSIALGVISVLNKRQISIPDDIEIVAIG 224 (289)
T ss_dssp SCCSEEEES--SHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred CCCcEEEEc--CCHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 578999864 67788999999999874 56799987
No 126
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=20.70 E-value=1.4e+02 Score=28.90 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=25.8
Q ss_pred CEEEEeCCChhhHHHHHHHHHhcCC-CCeEE
Q 013383 295 IKFVVDAGTGTTAVGLGLGAICLGL-PWEVT 324 (444)
Q Consensus 295 d~vvv~vGtGgt~aGl~~~~~~~g~-~~~vi 324 (444)
.-||+-||+|-+++-++.++..+|. ++++|
T Consensus 276 k~vI~yCgsGvtA~~~~laL~~lG~~~v~lY 306 (327)
T 3utn_X 276 KPTICSCGTGVSGVIIKTALELAGVPNVRLY 306 (327)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCEEEECChHHHHHHHHHHHHHcCCCCceeC
Confidence 3589999999999999999988886 57777
No 127
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=20.69 E-value=86 Score=30.26 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=25.1
Q ss_pred eEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 143 ~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
+|+-.|| |-.|.++|...++.|++++|+=..
T Consensus 8 dVvIVGa--G~aGl~~A~~L~~~G~~V~viE~~ 38 (399)
T 2x3n_A 8 DVLINGC--GIGGAMLAYLLGRQGHRVVVVEQA 38 (399)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECc--CHHHHHHHHHHHhCCCcEEEEeCC
Confidence 4555676 679999999999999999888544
No 128
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=20.44 E-value=83 Score=31.97 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=24.3
Q ss_pred eEEEeCcccchHHHHHHHHHHHhCCeEEEEec
Q 013383 143 DLVTCGGCQSAHATAVAVSCAERGLKSHLLLR 174 (444)
Q Consensus 143 ~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~ 174 (444)
.||-.|+ |..|.+.|..+++.|++++|+=.
T Consensus 43 DVvVVGa--G~AGl~AA~~aa~~G~~V~vlEk 72 (510)
T 4at0_A 43 DVVVAGY--GIAGVAASIEAARAGADVLVLER 72 (510)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCCEEEECS
T ss_pred CEEEECC--CHHHHHHHHHHHHCCCcEEEEeC
Confidence 4555676 78999999999999999777743
No 129
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=20.30 E-value=2e+02 Score=25.96 Aligned_cols=44 Identities=16% Similarity=-0.023 Sum_probs=31.8
Q ss_pred HHHHHHHhHHcCCCCcCEEEEeCCChhhHHHHHHHHHhcCC----CCeEEEEec
Q 013383 279 LLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGL----PWEVTAIAL 328 (444)
Q Consensus 279 ~~~Ei~~q~~~g~~~~d~vvv~vGtGgt~aGl~~~~~~~g~----~~~vigV~~ 328 (444)
...+++++ . +.||.||+ .+...+.|+..++++.|. ++.|+|+.-
T Consensus 179 ~~~~~l~~---~-~~~~ai~~--~~d~~A~g~~~al~~~G~~vP~di~vvg~D~ 226 (290)
T 2rgy_A 179 ATCQLLES---K-APFTGLFC--ANDTMAVSALARFQQLGISVPGDVSVIGYDD 226 (290)
T ss_dssp HHHHHHHH---T-CCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEEEEC
T ss_pred HHHHHHhC---C-CCCcEEEE--CCcHHHHHHHHHHHHcCCCCCCceEEEEeCC
Confidence 34555544 1 47899996 466788999999998875 467888864
No 130
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=20.20 E-value=96 Score=30.83 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=25.5
Q ss_pred hcCCCeEEEeCcccchHHHHHHHHHHHhCCeEEEEecC
Q 013383 138 DHIVTDLVTCGGCQSAHATAVAVSCAERGLKSHLLLRG 175 (444)
Q Consensus 138 ~~g~~~Vvt~G~s~GNhg~alA~aaa~~Gl~~~i~~~~ 175 (444)
.+..+ ||-.|| |-.|.++|..+++.|++++|+=..
T Consensus 24 ~~~~d-VvIIGg--G~aGl~aA~~la~~G~~V~llEk~ 58 (447)
T 2i0z_A 24 AMHYD-VIVIGG--GPSGLMAAIGAAEEGANVLLLDKG 58 (447)
T ss_dssp -CCCS-EEEECC--SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred cCCCC-EEEECC--cHHHHHHHHHHHHCCCCEEEEECC
Confidence 34444 444576 679999999999999998877543
Done!