BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013384
(444 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
Length = 249
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 141/252 (55%), Gaps = 33/252 (13%)
Query: 66 LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125
LS + RY+R ++L F +GQ L S +L++G GGLG A YLA+ GVG L ++D
Sbjct: 4 LSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF 63
Query: 126 DVVELNNMH-----------------------RINSTVHIIEHREALRTSNALEILSQYE 162
D V L+N+ RIN + I L + ++++++
Sbjct: 64 DTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHD 123
Query: 163 IVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY-NGGPCYRC---LFPTP 218
+V+D TDN R ++ C PLVSGAA+ +EGQ+TV+ Y +G PCYRC LF
Sbjct: 124 LVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFGEN 183
Query: 219 PPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKI 278
T C ++GV+ + G+IG LQA+EAIK+ + G+P SG+++++DA++ + R +K+
Sbjct: 184 ALT-----CVEAGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKL 238
Query: 279 RGRSSQCEACGE 290
R+ CE CG+
Sbjct: 239 M-RNPGCEVCGQ 249
>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex
pdb|1ZUD|3 Chain 3, Structure Of This-Thif Protein Complex
Length = 251
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 133/244 (54%), Gaps = 30/244 (12%)
Query: 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVEL 130
RYSR +LL ++GQ LL S +L+IG GGLG+PA LYLA GVG L + D D V L
Sbjct: 6 FMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHL 65
Query: 131 NNMHR-----------------------INSTVHIIEHREALRTSNALEILSQYEIVVDA 167
+N+ R +N + + ++ L + +++ ++V+D
Sbjct: 66 SNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDC 125
Query: 168 TDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYN--YNGGPCYRCLFPTPPPTTACQ 225
TDN +R I+ CV L PL++ +A+G GQL V + G CYRCL+P +
Sbjct: 126 TDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQG-CYRCLWPDNQEPE--R 182
Query: 226 RCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQC 285
C +GV+G V G++G LQALEAIK+ S + P +G + LFD S++ R + +R R+S C
Sbjct: 183 NCRTAGVVGPVVGVMGTLQALEAIKLLSGIETP-AGELRLFDGKSSQWRSLALR-RASGC 240
Query: 286 EACG 289
CG
Sbjct: 241 PVCG 244
>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|D Chain D, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|D Chain D, Structural Analysis Of Escherichia Coli Thif
Length = 253
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 133/244 (54%), Gaps = 30/244 (12%)
Query: 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVEL 130
RYSR +LL ++GQ LL S +L+IG GGLG+PA LYLA GVG L + D D V L
Sbjct: 8 FMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHL 67
Query: 131 NNMHR-----------------------INSTVHIIEHREALRTSNALEILSQYEIVVDA 167
+N+ R +N + + ++ L + +++ ++V+D
Sbjct: 68 SNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDC 127
Query: 168 TDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYN--YNGGPCYRCLFPTPPPTTACQ 225
TDN +R I+ CV L PL++ +A+G GQL V + G CYRCL+P +
Sbjct: 128 TDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQG-CYRCLWPDNQEPE--R 184
Query: 226 RCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQC 285
C +GV+G V G++G LQALEAIK+ S + P +G + LFD S++ R + +R R+S C
Sbjct: 185 NCRTAGVVGPVVGVMGTLQALEAIKLLSGIETP-AGELRLFDGKSSQWRSLALR-RASGC 242
Query: 286 EACG 289
CG
Sbjct: 243 PVCG 246
>pdb|3I2V|A Chain A, Crystal Structure Of Human Mocs3 Rhodanese-Like Domain
Length = 127
Score = 97.8 bits (242), Expect = 1e-20, Method: Composition-based stats.
Identities = 50/127 (39%), Positives = 75/127 (59%), Gaps = 8/127 (6%)
Query: 326 SRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEK- 384
SR+S +YK + +G H+L+DVRP I LP++++IPL LE R E +KE
Sbjct: 1 SRVSVTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDAESLKLLKEAI 60
Query: 385 -EEHRGSNASSGSNLYVVCRRGNDSQRAVQALHKLGFT------SARDIIGGLESWANDV 437
EE +G+ + +YV+C+ GNDSQ+AV+ L L + RD++GGL +WA +
Sbjct: 61 WEEKQGTQEGAAVPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLXAWAAKI 120
Query: 438 DPSFPVY 444
D +FP Y
Sbjct: 121 DGTFPQY 127
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 27/150 (18%)
Query: 96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-------------------- 135
+LV+GAGG+G L L G + ++D D ++++N++R
Sbjct: 20 VLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKES 79
Query: 136 ---INSTVHIIEHREALRTSN-ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 191
+I+ + +++ + +E Q+ +V++A DN +R ++ C+ PL+
Sbjct: 80 VLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIES 139
Query: 192 AALGLEGQLTVYNYNGGPCYRCLFPTPPPT 221
G GQ+T CY C P PT
Sbjct: 140 GTAGYLGQVTTIKKGVTECYEC---HPKPT 166
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 27/150 (18%)
Query: 96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-------------------- 135
+LV+GAGG+G L L G + ++D D ++++N++R
Sbjct: 40 VLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKES 99
Query: 136 ---INSTVHIIEHREALRTSN-ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 191
+I+ + +++ + +E Q+ +V++A DN +R ++ C+ PL+
Sbjct: 100 VLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIES 159
Query: 192 AALGLEGQLTVYNYNGGPCYRCLFPTPPPT 221
G GQ+T CY C P PT
Sbjct: 160 GTAGYLGQVTTIKKGVTECYEC---HPKPT 186
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 27/150 (18%)
Query: 96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-------------------- 135
+LV+GAGG+G L L G + ++D D ++++N++R
Sbjct: 22 VLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKES 81
Query: 136 ---INSTVHIIEHREALRTSN-ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSG 191
+I+ + +++ + +E Q+ +V++A DN +R ++ C+ PL+
Sbjct: 82 VLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIES 141
Query: 192 AALGLEGQLTVYNYNGGPCYRCLFPTPPPT 221
G GQ+T CY C P PT
Sbjct: 142 GTAGYLGQVTTIKKGVTECYEC---HPKPT 168
>pdb|3GK5|A Chain A, Crystal Structure Of Rhodanese-Related Protein
(Tvg0868615) From Thermoplasma Volcanium, Northeast
Structural Genomics Consortium Target Tvr109a
Length = 108
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 19/105 (18%)
Query: 339 NGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNL 398
N +A+ ++DVR S+ NSINIP+S+L + + K
Sbjct: 14 NIKAYTVLDVREPFELIFGSIANSINIPISELREKWKILERDKKYA-------------- 59
Query: 399 YVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWANDVDPSFPV 443
V+C GN S AV+ L +LG D+ GG++SW ++ +PV
Sbjct: 60 -VICAHGNRSAAAVEFLSQLGLNIV-DVEGGIQSW---IEEGYPV 99
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 47/197 (23%)
Query: 40 DTTVSQPQTDTVSNGSYRPSSAVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVI 99
D+ S P + T+S + +P RY + + FG E Q + S ++
Sbjct: 376 DSLESLPSSVTISEETCKPRGC-----------RYDGQIAV--FGSEFQEKIASLSTFLV 422
Query: 100 GAGGLGSPALLYLAACGV-----GRLGIVDHDVVELNNMHR------------------- 135
GAG +G L A GV G + + D D +E +N++R
Sbjct: 423 GAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIEKSNLNRQFLFRPRDVGKLKSECAST 482
Query: 136 ----INSTV--HIIEHREALRTSN----ALEILSQYEIVVDATDNAPSRYMISDCCVVLG 185
+N ++ I ++E + + E + +V +A DN +R + CV
Sbjct: 483 AVSIMNPSLTGKITSYQERVGPESEGIFGDEFFEKLSLVTNALDNVEARMYVDRRCVFFE 542
Query: 186 KPLVSGAALGLEGQLTV 202
KPL+ LG +G V
Sbjct: 543 KPLLESGTLGTKGNTQV 559
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 59 SSAVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVG 118
S+ +D GL YSR L + G E + +S++L+IG GLG + GV
Sbjct: 1 SNTIDEGL-------YSRQLYV--LGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVK 51
Query: 119 RLGIVDHDVVELNNM-HRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMI 177
+ + D + ++ + T I A T + L L+QY + V D + Y+
Sbjct: 52 SVTLYDPQPTRIEDLSSQYFLTEDDIGVPRAKVTVSKLAELNQY-VPVSVVDELSTEYLK 110
Query: 178 SDCCVVL 184
+ CVV+
Sbjct: 111 NFKCVVV 117
>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From
Arabidosis Thaliana
Length = 129
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 342 AHILVDVRPAHHFRIVSLPNSINIP-LSDLESRLPEISSAMKEKEEHRGSNASSGSNLYV 400
H +DVR F +IN+P ++ S + + + +++ H G + N+ V
Sbjct: 32 GHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQS----DNIIV 87
Query: 401 VCRRGNDSQRAVQALHKLGFTSARDIIGGLESWANDVDPS 440
C+ G S +A L GFT +DI+GG +WA + P+
Sbjct: 88 GCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPT 127
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 36/168 (21%)
Query: 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR------------------- 135
+LVIGAGGLG L LA G ++ ++D D ++++N++R
Sbjct: 413 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 472
Query: 136 -INSTV---HIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 186
+N V +++ H ++ N Q+ I+V D+ +R I+ + L
Sbjct: 473 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 531
Query: 187 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRC 227
PL+ G G +G V C C PP C
Sbjct: 532 LDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMC 579
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 44/168 (26%)
Query: 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLG-----SPALLYLAACGVGRLGIVDHDV 127
RY + + FG++ Q + S + ++G+G +G + ALL L + G + + D+D
Sbjct: 407 RYDNQIAV--FGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDS 464
Query: 128 VELNNMHR-------------------------------INSTVHII--EHREALRTSNA 154
+E +N++R IN+ + + E E S
Sbjct: 465 IEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDS-- 522
Query: 155 LEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTV 202
+ V +A DN +R + CV KPL+ LG +G V
Sbjct: 523 --FWESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQV 568
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 27/165 (16%)
Query: 74 YSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNM 133
YSR L + G E + S++L++G GLG + GV + + D + V+L ++
Sbjct: 10 YSRQLYV--LGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADL 67
Query: 134 -------------HRINSTVHIIEHREALRTSNALE------ILSQYEIVVDATDNA--P 172
R + T + A N L+ LSQ+++VV ATD
Sbjct: 68 STQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLDSLDDVTQLSQFQVVV-ATDTVSLE 126
Query: 173 SRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPT 217
+ I++ C G +S GL G V + G + L PT
Sbjct: 127 DKVKINEFCHSSGIRFISSETRGLFGNTFV---DLGDEFTVLDPT 168
>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb
pdb|3H5A|B Chain B, Crystal Structure Of E. Coli Mccb
pdb|3H5A|C Chain C, Crystal Structure Of E. Coli Mccb
pdb|3H5A|D Chain D, Crystal Structure Of E. Coli Mccb
Length = 358
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 103/278 (37%), Gaps = 82/278 (29%)
Query: 73 RYSRHLL-LPSFG---VEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128
RYSR+ L S+G V Q L + ++++G GG+G+ + LA G+G + ++D+D +
Sbjct: 91 RYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQI 150
Query: 129 ELNNMHR--------INSTVHIIEHREALRTSNALEILSQYEIVVDATD----------- 169
E N+ R + + RE L+ ++ + + + D TD
Sbjct: 151 ENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHKVPEADIWV 210
Query: 170 ---NAPSRYM--ISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTAC 224
+ P + ++ CV +P ++ G + V+ GP Y P T C
Sbjct: 211 VSADHPFNLINWVNKYCVRANQPYINA---GYVNDIAVF----GPLY------VPGKTGC 257
Query: 225 QRC----AD---------------------SGVLGVVPGIIGCLQALEAIKVASAVGEPL 259
C AD V + L A + IK EPL
Sbjct: 258 YECQKVVADLYGSEKENIDHKIKLINSRFKPATFAPVNNVAAALCAADVIKFIGKYSEPL 317
Query: 260 SGRMLLFDALSARIRI----VKIR----GRSSQCEACG 289
S L+ RI I +KI GRS C CG
Sbjct: 318 S--------LNKRIGIWSDEIKIHSQNMGRSPVCSVCG 347
>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|B Chain B, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|C Chain C, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|D Chain D, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5R|A Chain A, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|B Chain B, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|C Chain C, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|D Chain D, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H9G|A Chain A, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|B Chain B, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|C Chain C, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|D Chain D, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9J|A Chain A, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|B Chain B, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|C Chain C, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|D Chain D, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9Q|A Chain A, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|B Chain B, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|C Chain C, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|D Chain D, Crystal Structure Of E. Coli Mccb + Semet Mcca
Length = 353
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 103/278 (37%), Gaps = 82/278 (29%)
Query: 73 RYSRHLL-LPSFG---VEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128
RYSR+ L S+G V Q L + ++++G GG+G+ + LA G+G + ++D+D +
Sbjct: 94 RYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQI 153
Query: 129 ELNNMHR--------INSTVHIIEHREALRTSNALEILSQYEIVVDATD----------- 169
E N+ R + + RE L+ ++ + + + D TD
Sbjct: 154 ENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHKVPEADIWV 213
Query: 170 ---NAPSRYM--ISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTAC 224
+ P + ++ CV +P ++ G + V+ GP Y P T C
Sbjct: 214 VSADHPFNLINWVNKYCVRANQPYINA---GYVNDIAVF----GPLY------VPGKTGC 260
Query: 225 QRC----AD---------------------SGVLGVVPGIIGCLQALEAIKVASAVGEPL 259
C AD V + L A + IK EPL
Sbjct: 261 YECQKVVADLYGSEKENIDHKIKLINSRFKPATFAPVNNVAAALCAADVIKFIGKYSEPL 320
Query: 260 SGRMLLFDALSARIRI----VKIR----GRSSQCEACG 289
S L+ RI I +KI GRS C CG
Sbjct: 321 S--------LNKRIGIWSDEIKIHSQNMGRSPVCSVCG 350
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 36/169 (21%)
Query: 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR------------------- 135
+LVIGAGGLG L LA G ++ ++D D ++++N++R
Sbjct: 71 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 130
Query: 136 -INSTV---HIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 186
+N V +++ H ++ N Q+ I+V D+ +R I+ + L
Sbjct: 131 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 189
Query: 187 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCA 228
PL+ G G +G V C C PP C
Sbjct: 190 LDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCT 238
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 36/169 (21%)
Query: 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR------------------- 135
+LVIGAGGLG L LA G ++ ++D D ++++N++R
Sbjct: 42 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 136 -INSTV---HIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 186
+N V +++ H ++ N Q+ I+V D+ +R I+ + L
Sbjct: 102 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 160
Query: 187 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCA 228
PL+ G G +G V C C PP C
Sbjct: 161 LDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCT 209
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 36/169 (21%)
Query: 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR------------------- 135
+LVIGAGGLG L LA G ++ ++D D ++++N++R
Sbjct: 52 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 111
Query: 136 -INSTV---HIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 186
+N V +++ H ++ N Q+ I+V D+ +R I+ + L
Sbjct: 112 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 170
Query: 187 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCA 228
PL+ G G +G V C C PP C
Sbjct: 171 LDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCT 219
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 36/161 (22%)
Query: 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR------------------- 135
+LVIGAGGLG L LA G ++ ++D D ++++N++R
Sbjct: 42 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 136 -INSTV---HIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 186
+N V +++ H ++ N Q+ I+V D+ +R I+ + L
Sbjct: 102 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 160
Query: 187 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPP 220
PL+ G G +G V C C PP
Sbjct: 161 LDPSSIVPLIDGGTEGFKGNAAVILPGMTACIECTLELYPP 201
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 36/161 (22%)
Query: 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR------------------- 135
+LVIGAGGLG L LA G ++ ++D D ++++N++R
Sbjct: 42 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 136 -INSTV---HIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 186
+N V +++ H ++ N Q+ I+V D+ +R I+ + L
Sbjct: 102 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 160
Query: 187 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPP 220
PL+ G G +G V C C PP
Sbjct: 161 LDPSSIVPLIDGGTEGFKGNAQVILPGMTACIECTLELYPP 201
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 36/161 (22%)
Query: 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR------------------- 135
+LVIGAGGLG L LA G ++ ++D D ++++N++R
Sbjct: 39 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 98
Query: 136 -INSTV---HIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 186
+N V +++ H ++ N Q+ I+V D+ +R I+ + L
Sbjct: 99 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 157
Query: 187 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPP 220
PL+ G G +G V C C PP
Sbjct: 158 LDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 198
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 36/161 (22%)
Query: 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR------------------- 135
+LVIGAGGLG L LA G ++ ++D D ++++N++R
Sbjct: 42 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 101
Query: 136 -INSTV---HIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGK----- 186
+N V +++ H ++ N Q+ I+V D+ +R I+ + L
Sbjct: 102 FLNDRVPNCNVVPHFNKIQDFND-TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGV 160
Query: 187 -------PLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPP 220
PL+ G G +G V C C PP
Sbjct: 161 LDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 201
>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|3KYC|A Chain A, Human Sumo E1 Complex With A Sumo1-Amp Mimic
pdb|3KYD|A Chain A, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 346
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVD 124
G+S + +Y R + L +G+E Q L S +L++G GLG+ L GV L ++D
Sbjct: 10 GISEEEAAQYDRQIRL--WGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLD 67
Query: 125 HDVV 128
H+ V
Sbjct: 68 HEQV 71
>pdb|2K0Z|A Chain A, Solution Nmr Structure Of Protein Hp1203 From Helicobacter
Pylori 26695. Northeast Structural Genomics Consortium
(Nesg) Target Pt1ONTARIO CENTER FOR STRUCTURAL
PROTEOMICS TARGET HP1203
Length = 110
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 338 VNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSN 397
VN I+VDVR + + LPN+ I ++D E +L + S K+K+
Sbjct: 12 VNFNDFIVVDVRELDEYEELHLPNATLISVNDQE-KLADFLSQHKDKK------------ 58
Query: 398 LYVVCRRGNDSQRAVQALHKLGFT 421
+ + CR G + A +++H+LG+T
Sbjct: 59 VLLHCRAGRRALDAAKSMHELGYT 82
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 17/100 (17%)
Query: 345 LVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRR 404
L+DVR + + + SINIPL +L RL E+ ++Y+ C+
Sbjct: 506 LIDVREPNELKQGXIKGSINIPLDELRDRLEEV---------------PVDKDIYITCQL 550
Query: 405 GNDSQRAVQALHKLGFTSARDIIGGLESWANDVDPSFPVY 444
G A + L + G+ +++ GG + + V P VY
Sbjct: 551 GXRGYVAARXLXEKGY-KVKNVDGGFKLYGT-VLPERIVY 588
>pdb|3GUC|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3GUC|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3H8V|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
pdb|3H8V|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
Length = 292
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 68/177 (38%), Gaps = 51/177 (28%)
Query: 112 LAACGVGRLGIVDHDVVELNNMHRI-------------------------------NSTV 140
L CG+G+L + D+D VEL NM+R+ N +
Sbjct: 55 LTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNI 114
Query: 141 HIIEHREAL--RTSN-ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV-SGAAL-G 195
+E+ + R SN LE ++V+ DN +R I+ C LG+ + SG +
Sbjct: 115 TTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENA 174
Query: 196 LEGQLTVYNYNGGPCYRCLFPTPPPTTACQ----------RCADS--GVLGVVPGII 240
+ G + + C+ C PP A CA S +GVV GI+
Sbjct: 175 VSGHIQLIIPGESACFAC---APPLVVAANIDEKTLKREGVCAASLPTTMGVVAGIL 228
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 345 LVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRR 404
L+DVR + LP + +IPLS L + + ++ ++ V CR
Sbjct: 392 LLDVRNVDEWAGGHLPQAHHIPLSKLAAHIHDVPR---------------DGSVCVYCRT 436
Query: 405 GNDSQRAVQALHKLGFTSARDIIGGLESWANDVDPSFPV 443
G S A L G R+ +GG E+W FPV
Sbjct: 437 GGRSAIAASLLRAHGVGDVRNXVGGYEAWRGK---GFPV 472
>pdb|2JTQ|A Chain A, Rhodanese From E.Coli
pdb|2JTR|A Chain A, Rhodanese Persulfide From E. Coli
pdb|2JTS|A Chain A, Rhodanese With Anions From E. Coli
Length = 85
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 346 VDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRG 405
+DVR ++ + +INIPL +++ R I++A+ +K + + V C G
Sbjct: 5 IDVRVPEQYQQEHVQGAINIPLKEVKER---IATAVPDKND----------TVKVYCNAG 51
Query: 406 NDSQRAVQALHKLGFTSARDIIGGLESWA 434
S +A + L ++G+T + GGL+ A
Sbjct: 52 RQSGQAKEILSEMGYTHVEN-AGGLKDIA 79
>pdb|3NHV|A Chain A, Crystal Structure Of Bh2092 Protein From Bacillus
Halodurans, Northeast Structural Genomics Consortium
Target Bhr228f
pdb|3NHV|B Chain B, Crystal Structure Of Bh2092 Protein From Bacillus
Halodurans, Northeast Structural Genomics Consortium
Target Bhr228f
pdb|3NHV|C Chain C, Crystal Structure Of Bh2092 Protein From Bacillus
Halodurans, Northeast Structural Genomics Consortium
Target Bhr228f
pdb|3NHV|D Chain D, Crystal Structure Of Bh2092 Protein From Bacillus
Halodurans, Northeast Structural Genomics Consortium
Target Bhr228f
pdb|3NHV|E Chain E, Crystal Structure Of Bh2092 Protein From Bacillus
Halodurans, Northeast Structural Genomics Consortium
Target Bhr228f
Length = 144
Score = 32.0 bits (71), Expect = 0.67, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 341 EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYV 400
E I+VDVR A ++ +P +I+IP +++ E ++ KE+ + Y
Sbjct: 32 EGIIVVDVRDAEAYKECHIPTAISIP----GNKINEDTTKRLSKEKVIIT--------YC 79
Query: 401 VCRRGNDSQRAVQALHKLGFTSARDIIGGLESW 433
N + +A +LGF +++IGG+E W
Sbjct: 80 WGPACNGATKAAAKFAQLGF-RVKELIGGIEYW 111
>pdb|3FOJ|A Chain A, Crystal Structure Of Ssp1007 From Staphylococcus
Saprophyticus Subsp. Saprophyticus. Northeast Structural
Genomics Target Syr101a
Length = 100
Score = 32.0 bits (71), Expect = 0.70, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 16/109 (14%)
Query: 328 ISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEH 387
I+ E KEK+++ +VDVR +P + IP + +P+ + + E +
Sbjct: 4 ITVTELKEKILDANPVNIVDVRTDQETAXGIIPGAETIP----XNSIPDNLNYFNDNETY 59
Query: 388 RGSNASSGSNLYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWAND 436
Y++C+ G S + VQ L + G +A ++ GG + + ++
Sbjct: 60 -----------YIICKAGGRSAQVVQYLEQNG-VNAVNVEGGXDEFGDE 96
>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn
Length = 108
Score = 32.0 bits (71), Expect = 0.73, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 400 VVCRRGNDSQRAVQALHKLGFTSARDIIGGLESW 433
V+C GN S+ A Q L + G+ I GG E+W
Sbjct: 63 VMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96
>pdb|3O3W|A Chain A, Crystal Structure Of Bh2092 Protein (Residues 14-131) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr228a
pdb|3O3W|B Chain B, Crystal Structure Of Bh2092 Protein (Residues 14-131) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr228a
pdb|3O3W|C Chain C, Crystal Structure Of Bh2092 Protein (Residues 14-131) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr228a
pdb|3O3W|D Chain D, Crystal Structure Of Bh2092 Protein (Residues 14-131) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr228a
pdb|3O3W|E Chain E, Crystal Structure Of Bh2092 Protein (Residues 14-131) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr228a
pdb|3O3W|F Chain F, Crystal Structure Of Bh2092 Protein (Residues 14-131) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr228a
pdb|3O3W|G Chain G, Crystal Structure Of Bh2092 Protein (Residues 14-131) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr228a
pdb|3O3W|H Chain H, Crystal Structure Of Bh2092 Protein (Residues 14-131) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr228a
pdb|3O3W|I Chain I, Crystal Structure Of Bh2092 Protein (Residues 14-131) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr228a
Length = 126
Score = 32.0 bits (71), Expect = 0.75, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 341 EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYV 400
E I+VDVR A ++ +P +I+IP +++ E ++ KE+ + Y
Sbjct: 34 EGIIVVDVRDAEAYKECHIPTAISIP----GNKINEDTTKRLSKEKVIIT--------YC 81
Query: 401 VCRRGNDSQRAVQALHKLGFTSARDIIGGLESW 433
N + +A +LGF +++IGG+E W
Sbjct: 82 WGPACNGATKAAAKFAQLGF-RVKELIGGIEYW 113
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 341 EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYV 400
E +L+DVR + L ++NIP+ +L R E+ K+KE + +
Sbjct: 485 EDQLLLDVRNPGELQNGGLEGAVNIPVDELRDRXHELP---KDKE------------III 529
Query: 401 VCRRGNDSQRAVQALHKLGFTSARDIIGGLESW 433
C+ G A + L G+ AR++IGG ++
Sbjct: 530 FCQVGLRGNVAYRQLVNNGY-RARNLIGGYRTY 561
>pdb|3IWH|A Chain A, Crystal Structure Of Rhodanese-Like Domain Protein From
Staphylococcus Aureus
pdb|3MZZ|A Chain A, Crystal Structure Of Rhodanese-Like Domain Protein From
Staphylococcus Aureus
Length = 103
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 328 ISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEH 387
I++ E K K++ + +VDVR +PN+ IP +P+ ++ + E +
Sbjct: 4 ITTDELKNKLLESKPVQIVDVRTDEETAXGYIPNAKLIP----XDTIPDNLNSFNKNEIY 59
Query: 388 RGSNASSGSNLYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWAND 436
Y+VC G S + V+ L G A ++ GG +W ++
Sbjct: 60 -----------YIVCAGGVRSAKVVEYLEANGI-DAVNVEGGXHAWGDE 96
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/240 (19%), Positives = 88/240 (36%), Gaps = 49/240 (20%)
Query: 67 SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
S D+ + + +LP ++ N + +L++GAG LG L A GV ++ VD+
Sbjct: 303 SVDLNLKLMKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 359
Query: 127 VVELNNMHR--------------------------------INSTVHIIEHREALRTSNA 154
V +N R + ++ +I H+ +
Sbjct: 360 TVSYSNPVRQALYNFEDAGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQH 419
Query: 155 LE------ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGG 208
+ ++ +++I+ D+ SR++ S + K +++ AALG + L + + N
Sbjct: 420 KDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVIN-AALGFDSYLVMRHGNRD 478
Query: 209 P-------CYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSG 261
CY C P + R D PG+ +L + S + SG
Sbjct: 479 EQSSKQLGCYFCHDVVAPTDSLTDRTLDQMCTVTRPGVAMMASSLAVELMTSLLQTKYSG 538
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 67 SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
S D+ + + +LP ++ N + +L++GAG LG L A GV ++ VD+
Sbjct: 303 SVDLNLKLMKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 359
Query: 127 VVELNN 132
V +N
Sbjct: 360 TVSYSN 365
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 67 SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
S D+ + + +LP ++ N + +L++GAG LG L A GV ++ VD+
Sbjct: 304 SVDLNLKLMKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 360
Query: 127 VVELNN 132
V +N
Sbjct: 361 TVSYSN 366
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 67 SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
S D+ + + +LP ++ N + +L++GAG LG L A GV ++ VD+
Sbjct: 304 SVDLNLKLMKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 360
Query: 127 VVELNN 132
V +N
Sbjct: 361 TVSYSN 366
>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex
Length = 340
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 67 SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
S D+ + + +LP ++ N + +L++GAG LG L A GV ++ VD+
Sbjct: 11 SVDLNLKLXKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 67
Query: 127 VVELNN 132
V +N
Sbjct: 68 TVSYSN 73
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 67 SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
S D+ + + +LP ++ N + +L++GAG LG L A GV ++ VD+
Sbjct: 15 SVDLNLKLMKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 71
Query: 127 VVELNN 132
V +N
Sbjct: 72 TVSYSN 77
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 67 SPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126
S D+ + + +LP ++ N + +L++GAG LG L A GV ++ VD+
Sbjct: 11 SVDLNLKLMKWRILPDLNLDIIKN---TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 67
Query: 127 VVELNN 132
V +N
Sbjct: 68 TVSYSN 73
>pdb|3D1P|A Chain A, Atomic Resolution Structure Of Uncharacterized Protein
From Saccharomyces Cerevisiae
Length = 139
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 344 ILVDVRPAHHFRIVSLPNSINIP 366
+LVDVR + IV +P SIN+P
Sbjct: 42 VLVDVREPSEYSIVHIPASINVP 64
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 341 EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYV 400
E +L+DVR + L ++NIP+ +L R+ E+ K+KE + +
Sbjct: 485 EDQLLLDVRNPGELQNGGLEGAVNIPVDELRDRMHELP---KDKE------------III 529
Query: 401 VCRRGNDSQRAVQALHKLGFTSARDIIGGLESW 433
+ G A + L G+ AR++IGG ++
Sbjct: 530 FSQVGLRGNVAYRQLVNNGY-RARNLIGGYRTY 561
>pdb|2KL3|A Chain A, Solution Nmr Structure Of The Rhodanese-Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437a
Length = 132
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 334 KEKVVNGE-AHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNA 392
K ++ GE A ++DVR + + ++ +P+ DL R SS++++
Sbjct: 11 KSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDR---ASSSLEKSR------- 60
Query: 393 SSGSNLYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESW 433
++YV + +AV L GF ++ GGL +W
Sbjct: 61 ----DIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAW 97
>pdb|1ZOV|A Chain A, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
pdb|1ZOV|B Chain B, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
Length = 386
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEH 145
++V+GAG +G A YLA GV L + D N H ++ II H
Sbjct: 6 VIVVGAGSMGMAAGYYLAKQGVKTLLVDSFDPPHTNGSHHGDT--RIIRH 53
>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx
pdb|3S1L|B Chain B, Crystal Structure Of Apo-Form Furx
pdb|3S1L|C Chain C, Crystal Structure Of Apo-Form Furx
pdb|3S1L|D Chain D, Crystal Structure Of Apo-Form Furx
pdb|3S2E|A Chain A, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|B Chain B, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|C Chain C, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|D Chain D, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|E Chain E, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|F Chain F, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|G Chain G, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|H Chain H, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2F|A Chain A, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|B Chain B, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|C Chain C, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|D Chain D, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|E Chain E, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|F Chain F, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|G Chain G, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|H Chain H, Crystal Structure Of Furx Nadh:furfural
pdb|3S2G|A Chain A, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|B Chain B, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|C Chain C, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|D Chain D, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|E Chain E, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|F Chain F, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|G Chain G, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|H Chain H, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2I|A Chain A, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|B Chain B, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|C Chain C, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|D Chain D, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|E Chain E, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|F Chain F, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|G Chain G, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|H Chain H, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
Length = 340
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHI 142
+++ G GGLG A+ Y A G+ R+ VD D +LN R+ + V +
Sbjct: 170 VVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAV 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,827,795
Number of Sequences: 62578
Number of extensions: 514791
Number of successful extensions: 1321
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1250
Number of HSP's gapped (non-prelim): 66
length of query: 444
length of database: 14,973,337
effective HSP length: 102
effective length of query: 342
effective length of database: 8,590,381
effective search space: 2937910302
effective search space used: 2937910302
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)