Query 013384
Match_columns 444
No_of_seqs 609 out of 3537
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:18:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2017 Molybdopterin synthase 100.0 6.1E-99 1E-103 714.6 26.9 369 61-444 34-427 (427)
2 PRK07411 hypothetical protein; 100.0 1.8E-74 3.9E-79 586.0 34.8 355 65-444 10-390 (390)
3 PRK07878 molybdopterin biosynt 100.0 7.3E-72 1.6E-76 568.2 36.8 353 64-444 13-392 (392)
4 PRK05597 molybdopterin biosynt 100.0 1.6E-67 3.6E-72 529.3 32.4 328 68-435 3-354 (355)
5 PRK05600 thiamine biosynthesis 100.0 7.7E-67 1.7E-71 525.4 31.5 327 65-431 13-369 (370)
6 PRK07688 thiamine/molybdopteri 100.0 8.5E-55 1.8E-59 433.7 27.4 283 71-362 2-317 (339)
7 PRK12475 thiamine/molybdopteri 100.0 9.5E-51 2.1E-55 404.5 25.6 260 71-338 2-289 (338)
8 PRK05690 molybdopterin biosynt 100.0 7.1E-49 1.5E-53 375.3 24.0 218 65-285 4-245 (245)
9 PRK08762 molybdopterin biosynt 100.0 3E-48 6.5E-53 393.8 25.3 244 63-311 105-375 (376)
10 TIGR02355 moeB molybdopterin s 100.0 2.2E-48 4.8E-53 370.3 22.6 215 71-288 2-240 (240)
11 PRK08223 hypothetical protein; 100.0 5.6E-47 1.2E-51 364.3 22.9 206 71-279 7-265 (287)
12 PRK08328 hypothetical protein; 100.0 2E-45 4.4E-50 348.7 21.4 206 66-278 2-231 (231)
13 cd00757 ThiF_MoeB_HesA_family 100.0 7.8E-43 1.7E-47 331.0 21.3 205 73-278 1-228 (228)
14 COG0476 ThiF Dinucleotide-util 100.0 1.5E-42 3.2E-47 334.6 21.0 225 65-289 2-253 (254)
15 TIGR03603 cyclo_dehy_ocin bact 100.0 1.6E-42 3.5E-47 342.0 20.8 217 64-295 45-301 (318)
16 TIGR02356 adenyl_thiF thiazole 100.0 4E-41 8.7E-46 313.2 17.2 178 73-252 1-202 (202)
17 cd01492 Aos1_SUMO Ubiquitin ac 100.0 4.1E-36 8.8E-41 278.1 17.8 170 71-272 1-193 (197)
18 cd01485 E1-1_like Ubiquitin ac 100.0 1.8E-35 3.9E-40 274.1 18.4 167 73-272 1-194 (198)
19 cd01488 Uba3_RUB Ubiquitin act 100.0 1E-33 2.2E-38 274.3 22.3 192 95-289 1-291 (291)
20 PRK08644 thiamine biosynthesis 100.0 3.3E-32 7.2E-37 254.7 17.8 169 83-257 18-211 (212)
21 PRK14852 hypothetical protein; 100.0 2.6E-32 5.6E-37 295.9 18.8 205 72-279 313-569 (989)
22 PRK14851 hypothetical protein; 100.0 5E-32 1.1E-36 290.0 18.9 211 66-279 18-280 (679)
23 cd01491 Ube1_repeat1 Ubiquitin 100.0 8.2E-32 1.8E-36 260.8 18.5 187 73-269 1-279 (286)
24 TIGR01381 E1_like_apg7 E1-like 100.0 7.6E-32 1.7E-36 280.7 19.6 212 73-291 321-612 (664)
25 PRK07877 hypothetical protein; 100.0 1.3E-30 2.9E-35 279.6 19.4 189 64-257 78-326 (722)
26 KOG2336 Molybdopterin biosynth 100.0 4.5E-30 9.8E-35 238.4 13.6 263 17-286 5-313 (422)
27 PRK15116 sulfur acceptor prote 100.0 2.5E-29 5.5E-34 241.2 18.5 189 65-255 4-263 (268)
28 cd01489 Uba2_SUMO Ubiquitin ac 100.0 4.2E-29 9E-34 244.7 16.6 123 95-217 1-147 (312)
29 TIGR02354 thiF_fam2 thiamine b 100.0 1.1E-28 2.3E-33 228.9 16.0 163 82-252 10-200 (200)
30 cd01487 E1_ThiF_like E1_ThiF_l 100.0 1.5E-28 3.3E-33 223.2 16.1 149 95-249 1-174 (174)
31 cd01484 E1-2_like Ubiquitin ac 100.0 3.9E-28 8.5E-33 229.5 16.2 122 95-216 1-147 (234)
32 KOG2015 NEDD8-activating compl 100.0 8.4E-28 1.8E-32 227.3 16.6 206 84-292 31-338 (422)
33 COG1179 Dinucleotide-utilizing 100.0 1.5E-27 3.3E-32 219.3 15.5 186 68-255 7-258 (263)
34 TIGR01408 Ube1 ubiquitin-activ 100.0 7.9E-28 1.7E-32 266.9 15.4 154 71-228 399-584 (1008)
35 KOG2013 SMT3/SUMO-activating c 99.9 1.7E-27 3.6E-32 235.5 12.3 129 86-214 5-157 (603)
36 cd00755 YgdL_like Family of ac 99.9 9.9E-27 2.1E-31 219.7 16.5 167 83-249 1-231 (231)
37 TIGR01408 Ube1 ubiquitin-activ 99.9 6.3E-26 1.4E-30 251.8 18.2 127 70-202 3-154 (1008)
38 cd01486 Apg7 Apg7 is an E1-lik 99.9 2E-25 4.4E-30 215.0 19.1 196 95-291 1-278 (307)
39 cd01493 APPBP1_RUB Ubiquitin a 99.9 1.2E-25 2.6E-30 229.3 17.1 181 72-255 1-221 (425)
40 TIGR03693 ocin_ThiF_like putat 99.9 1.4E-24 3E-29 224.4 19.5 221 63-290 95-336 (637)
41 cd01490 Ube1_repeat2 Ubiquitin 99.9 7.9E-25 1.7E-29 222.3 14.6 133 95-229 1-165 (435)
42 KOG2014 SMT3/SUMO-activating c 99.9 1.3E-24 2.7E-29 204.8 14.6 136 64-202 4-162 (331)
43 PF00899 ThiF: ThiF family; I 99.9 8E-24 1.7E-28 184.6 11.7 110 92-201 1-133 (135)
44 TIGR03736 PRTRC_ThiF PRTRC sys 99.9 2.8E-23 6E-28 196.8 13.8 185 91-278 9-243 (244)
45 cd01483 E1_enzyme_family Super 99.9 3.5E-22 7.5E-27 175.9 12.9 110 95-204 1-133 (143)
46 cd01526 RHOD_ThiF Member of th 99.9 1.9E-22 4.2E-27 172.8 10.7 120 320-444 2-122 (122)
47 PTZ00245 ubiquitin activating 99.9 1.9E-22 4.2E-27 187.5 8.4 95 66-168 1-117 (287)
48 PRK06153 hypothetical protein; 99.9 4.5E-21 9.8E-26 190.4 17.1 126 85-219 168-320 (393)
49 KOG2018 Predicted dinucleotide 99.9 1.6E-21 3.5E-26 184.2 11.8 200 72-273 55-327 (430)
50 cd01533 4RHOD_Repeat_2 Member 99.9 3E-21 6.6E-26 161.9 9.9 102 323-437 7-109 (109)
51 cd01518 RHOD_YceA Member of th 99.8 1E-20 2.2E-25 156.5 9.0 100 326-435 2-101 (101)
52 KOG2012 Ubiquitin activating e 99.8 2E-20 4.4E-25 195.4 7.1 138 72-211 411-580 (1013)
53 cd01534 4RHOD_Repeat_3 Member 99.8 8.2E-20 1.8E-24 149.4 8.8 93 328-434 1-94 (95)
54 cd01523 RHOD_Lact_B Member of 99.8 7.9E-20 1.7E-24 150.8 8.0 98 328-434 1-99 (100)
55 KOG1530 Rhodanese-related sulf 99.8 1.8E-19 4E-24 150.2 8.3 115 323-440 20-134 (136)
56 cd01528 RHOD_2 Member of the R 99.8 3.3E-19 7.2E-24 147.4 9.4 99 327-437 1-100 (101)
57 PRK00162 glpE thiosulfate sulf 99.8 3.5E-19 7.6E-24 149.1 9.2 100 324-439 3-102 (108)
58 cd01527 RHOD_YgaP Member of th 99.8 4.3E-19 9.3E-24 146.1 8.2 97 326-439 2-98 (99)
59 cd01444 GlpE_ST GlpE sulfurtra 99.8 5.2E-19 1.1E-23 144.5 8.5 93 327-434 1-95 (96)
60 PF05237 MoeZ_MoeB: MoeZ/MoeB 99.8 3.5E-19 7.7E-24 142.1 5.7 83 206-291 1-83 (84)
61 cd01519 RHOD_HSP67B2 Member of 99.8 1.9E-18 4.2E-23 143.8 9.6 101 329-435 2-106 (106)
62 cd01525 RHOD_Kc Member of the 99.8 1.4E-18 3.1E-23 144.4 8.8 98 328-434 1-104 (105)
63 KOG2016 NEDD8-activating compl 99.8 2.1E-18 4.6E-23 169.8 10.0 183 68-252 4-225 (523)
64 PLN02160 thiosulfate sulfurtra 99.8 3.7E-18 8E-23 148.9 9.7 108 324-440 13-126 (136)
65 cd01524 RHOD_Pyr_redox Member 99.7 3.7E-18 8.1E-23 138.1 8.1 89 328-434 1-89 (90)
66 cd01447 Polysulfide_ST Polysul 99.7 2.9E-18 6.3E-23 141.8 7.3 101 328-436 1-102 (103)
67 cd01521 RHOD_PspE2 Member of t 99.7 6.4E-18 1.4E-22 142.0 9.0 99 326-439 8-109 (110)
68 cd01522 RHOD_1 Member of the R 99.7 5.1E-18 1.1E-22 144.3 8.2 102 328-436 1-105 (117)
69 cd01520 RHOD_YbbB Member of th 99.7 1.1E-17 2.4E-22 144.5 10.3 102 328-435 1-126 (128)
70 cd01530 Cdc25 Cdc25 phosphatas 99.7 7.7E-18 1.7E-22 144.0 8.4 100 326-434 2-120 (121)
71 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 2.9E-17 6.3E-22 147.4 11.5 112 322-439 32-161 (162)
72 KOG2012 Ubiquitin activating e 99.7 3.3E-17 7.2E-22 171.6 12.7 124 72-201 18-164 (1013)
73 cd01529 4RHOD_Repeats Member o 99.7 1.9E-17 4.1E-22 135.6 8.7 86 340-434 10-95 (96)
74 cd01448 TST_Repeat_1 Thiosulfa 99.7 3.6E-17 7.9E-22 139.8 10.3 102 328-436 2-121 (122)
75 cd01449 TST_Repeat_2 Thiosulfa 99.7 2.8E-17 6E-22 139.6 9.0 100 328-434 1-117 (118)
76 PRK05320 rhodanese superfamily 99.7 3.7E-17 7.9E-22 157.1 10.8 107 323-438 107-218 (257)
77 cd01531 Acr2p Eukaryotic arsen 99.7 7.3E-17 1.6E-21 136.2 10.2 101 326-436 2-112 (113)
78 PF00581 Rhodanese: Rhodanese- 99.7 4.9E-17 1.1E-21 136.1 8.8 103 329-436 1-113 (113)
79 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 7.9E-17 1.7E-21 136.0 9.5 99 326-434 2-112 (113)
80 smart00450 RHOD Rhodanese Homo 99.7 6.9E-17 1.5E-21 131.5 8.8 92 341-438 3-99 (100)
81 PRK01415 hypothetical protein; 99.7 8.2E-17 1.8E-21 152.7 9.8 104 325-438 111-214 (247)
82 cd01532 4RHOD_Repeat_1 Member 99.7 7.1E-17 1.5E-21 131.2 7.4 82 341-435 9-92 (92)
83 TIGR02981 phageshock_pspE phag 99.7 1.3E-16 2.8E-21 131.8 8.2 81 341-435 17-97 (101)
84 cd01535 4RHOD_Repeat_4 Member 99.7 1.1E-16 2.3E-21 141.2 8.2 92 333-439 2-93 (145)
85 COG0607 PspE Rhodanese-related 99.7 1.1E-16 2.4E-21 133.8 7.7 96 335-443 13-109 (110)
86 PRK00142 putative rhodanese-re 99.7 3.4E-16 7.5E-21 154.7 9.8 106 323-438 109-214 (314)
87 PRK10287 thiosulfate:cyanide s 99.6 2.5E-16 5.5E-21 130.6 7.1 80 342-435 20-99 (104)
88 cd00158 RHOD Rhodanese Homolog 99.6 5.4E-16 1.2E-20 124.0 7.3 87 334-434 3-89 (89)
89 PRK08762 molybdopterin biosynt 99.6 6.6E-16 1.4E-20 157.2 9.6 100 325-439 2-101 (376)
90 cd01445 TST_Repeats Thiosulfat 99.6 2E-15 4.4E-20 132.0 10.8 101 328-434 1-137 (138)
91 PLN02723 3-mercaptopyruvate su 99.6 1.7E-14 3.7E-19 143.6 10.9 108 326-442 190-314 (320)
92 PRK11493 sseA 3-mercaptopyruva 99.5 1.9E-14 4E-19 141.0 10.7 106 327-439 6-132 (281)
93 PLN02723 3-mercaptopyruvate su 99.5 3.2E-14 6.9E-19 141.7 10.6 109 324-439 20-148 (320)
94 PRK09629 bifunctional thiosulf 99.5 2.9E-14 6.2E-19 152.6 10.7 106 327-439 10-126 (610)
95 KOG2337 Ubiquitin activating E 99.5 6.9E-14 1.5E-18 140.4 11.8 204 87-291 334-620 (669)
96 PRK11493 sseA 3-mercaptopyruva 99.5 4.1E-14 9E-19 138.5 10.1 102 327-435 154-271 (281)
97 cd01446 DSP_MapKP N-terminal r 99.5 5.8E-14 1.3E-18 121.8 8.9 109 328-436 2-127 (132)
98 PRK09629 bifunctional thiosulf 99.5 1.3E-13 2.8E-18 147.6 11.6 104 326-436 147-264 (610)
99 TIGR03167 tRNA_sel_U_synt tRNA 99.5 4.2E-14 9E-19 139.4 6.8 93 343-440 3-119 (311)
100 PRK11784 tRNA 2-selenouridine 99.5 5.6E-14 1.2E-18 140.4 7.6 106 328-439 3-132 (345)
101 COG2897 SseA Rhodanese-related 99.4 4.8E-13 1E-17 129.4 10.1 108 325-438 155-277 (285)
102 COG1054 Predicted sulfurtransf 99.2 1.5E-11 3.2E-16 117.2 7.8 103 325-437 112-214 (308)
103 COG2897 SseA Rhodanese-related 99.2 4.2E-11 9E-16 116.0 10.5 111 324-440 9-136 (285)
104 PRK01269 tRNA s(4)U8 sulfurtra 99.1 6E-11 1.3E-15 124.5 6.9 73 341-428 406-482 (482)
105 KOG3772 M-phase inducer phosph 98.9 2.5E-09 5.3E-14 103.8 6.8 106 323-436 153-276 (325)
106 KOG1529 Mercaptopyruvate sulfu 98.7 4.3E-08 9.3E-13 93.4 7.3 110 327-439 6-133 (286)
107 TIGR03882 cyclo_dehyd_2 bacter 98.6 1.1E-06 2.5E-11 81.1 13.5 95 84-214 96-193 (193)
108 KOG1529 Mercaptopyruvate sulfu 98.5 3E-07 6.4E-12 87.7 7.4 88 341-435 171-275 (286)
109 COG5105 MIH1 Mitotic inducer, 98.0 2E-05 4.3E-10 75.8 7.8 102 323-436 239-358 (427)
110 COG1748 LYS9 Saccharopine dehy 98.0 2.3E-05 5.1E-10 79.3 8.7 97 94-194 2-101 (389)
111 COG4015 Predicted dinucleotide 97.9 0.00019 4.1E-09 62.9 11.7 159 94-254 19-212 (217)
112 PF01488 Shikimate_DH: Shikima 97.9 1.6E-05 3.5E-10 69.1 4.7 79 90-172 9-87 (135)
113 PF13241 NAD_binding_7: Putati 97.8 4.6E-05 1E-09 63.1 6.0 88 90-191 4-91 (103)
114 PRK06718 precorrin-2 dehydroge 97.8 0.0002 4.3E-09 66.7 10.3 93 90-191 7-99 (202)
115 TIGR01470 cysG_Nterm siroheme 97.7 0.00024 5.3E-09 66.3 10.3 95 90-191 6-100 (205)
116 PRK12549 shikimate 5-dehydroge 97.6 6.6E-05 1.4E-09 73.7 5.5 74 90-169 124-201 (284)
117 PRK06719 precorrin-2 dehydroge 97.5 0.00072 1.6E-08 60.4 10.0 86 89-184 9-94 (157)
118 PF03435 Saccharop_dh: Sacchar 97.4 0.00032 7E-09 71.8 6.9 95 96-191 1-97 (386)
119 PRK05562 precorrin-2 dehydroge 97.2 0.0028 6E-08 59.7 10.5 96 89-191 21-116 (223)
120 PRK14027 quinate/shikimate deh 97.1 0.00048 1E-08 67.5 4.4 75 91-169 125-203 (283)
121 TIGR01809 Shik-DH-AROM shikima 97.1 0.00056 1.2E-08 67.1 4.5 77 91-170 123-200 (282)
122 PF01113 DapB_N: Dihydrodipico 97.1 0.0029 6.2E-08 54.2 8.1 91 95-193 2-99 (124)
123 COG1648 CysG Siroheme synthase 97.0 0.0013 2.9E-08 61.4 5.7 95 90-191 9-103 (210)
124 cd01080 NAD_bind_m-THF_DH_Cycl 96.9 0.0016 3.4E-08 58.9 5.8 58 90-172 41-99 (168)
125 PF02826 2-Hacid_dh_C: D-isome 96.8 0.00037 8E-09 63.5 0.7 94 87-192 30-127 (178)
126 PRK15469 ghrA bifunctional gly 96.8 0.0044 9.6E-08 61.6 8.4 91 89-192 132-226 (312)
127 COG2603 Predicted ATPase [Gene 96.8 0.0016 3.5E-08 62.4 5.0 99 329-434 4-127 (334)
128 PRK12548 shikimate 5-dehydroge 96.8 0.0021 4.5E-08 63.3 5.9 37 91-127 124-160 (289)
129 PRK13940 glutamyl-tRNA reducta 96.8 0.0012 2.7E-08 68.0 4.3 77 90-172 178-254 (414)
130 PRK11199 tyrA bifunctional cho 96.7 0.0097 2.1E-07 60.8 10.4 93 64-180 64-162 (374)
131 PF01210 NAD_Gly3P_dh_N: NAD-d 96.7 0.0026 5.6E-08 56.7 5.2 94 95-191 1-102 (157)
132 PRK12749 quinate/shikimate deh 96.7 0.0027 5.8E-08 62.5 5.6 36 91-126 122-157 (288)
133 PRK00258 aroE shikimate 5-dehy 96.7 0.002 4.4E-08 63.0 4.7 75 90-170 120-195 (278)
134 COG0373 HemA Glutamyl-tRNA red 96.7 0.0016 3.5E-08 66.5 4.0 76 90-172 175-250 (414)
135 cd05213 NAD_bind_Glutamyl_tRNA 96.6 0.0035 7.6E-08 62.3 6.3 83 91-180 176-258 (311)
136 PF03807 F420_oxidored: NADP o 96.6 0.0041 8.8E-08 50.2 5.2 90 95-192 1-94 (96)
137 TIGR01035 hemA glutamyl-tRNA r 96.5 0.0037 8E-08 64.8 5.8 76 90-172 177-252 (417)
138 cd01065 NAD_bind_Shikimate_DH 96.5 0.0023 4.9E-08 56.4 3.6 75 91-171 17-92 (155)
139 PRK05476 S-adenosyl-L-homocyst 96.4 0.0055 1.2E-07 63.3 6.1 90 90-194 209-301 (425)
140 PLN02928 oxidoreductase family 96.4 0.0064 1.4E-07 61.4 6.5 102 89-192 155-262 (347)
141 COG0169 AroE Shikimate 5-dehyd 96.4 0.0031 6.8E-08 61.6 3.7 44 91-134 124-167 (283)
142 PRK08410 2-hydroxyacid dehydro 96.4 0.0072 1.6E-07 60.1 6.4 88 89-192 141-232 (311)
143 PRK07574 formate dehydrogenase 96.4 0.053 1.1E-06 55.5 12.8 93 89-192 188-284 (385)
144 PF03949 Malic_M: Malic enzyme 96.3 0.0038 8.3E-08 59.8 4.0 104 89-192 21-140 (255)
145 PLN02819 lysine-ketoglutarate 96.3 0.012 2.5E-07 67.0 8.4 99 91-192 567-679 (1042)
146 PLN02494 adenosylhomocysteinas 96.3 0.0036 7.8E-08 65.0 4.0 108 72-193 232-342 (477)
147 PRK06487 glycerate dehydrogena 96.3 0.0084 1.8E-07 59.8 6.5 86 89-192 144-233 (317)
148 cd00762 NAD_bind_malic_enz NAD 96.3 0.0064 1.4E-07 58.2 5.2 103 89-192 21-140 (254)
149 PRK06932 glycerate dehydrogena 96.2 0.0093 2E-07 59.4 6.4 87 89-192 143-233 (314)
150 PRK06436 glycerate dehydrogena 96.2 0.0096 2.1E-07 59.0 6.4 88 89-192 118-209 (303)
151 PRK14192 bifunctional 5,10-met 96.2 0.0097 2.1E-07 58.3 6.3 77 89-193 155-232 (283)
152 PRK10637 cysG siroheme synthas 96.2 0.029 6.2E-07 58.9 10.3 94 89-189 8-101 (457)
153 PRK00048 dihydrodipicolinate r 96.2 0.032 7E-07 53.9 9.7 87 94-191 2-90 (257)
154 cd05291 HicDH_like L-2-hydroxy 96.2 0.005 1.1E-07 61.1 4.1 70 94-171 1-79 (306)
155 COG0569 TrkA K+ transport syst 96.1 0.033 7.2E-07 52.7 9.2 95 94-192 1-99 (225)
156 PRK14106 murD UDP-N-acetylmura 96.1 0.01 2.2E-07 62.0 6.2 94 90-190 2-97 (450)
157 cd00401 AdoHcyase S-adenosyl-L 96.0 0.012 2.7E-07 60.5 6.4 71 90-172 199-269 (413)
158 PRK13403 ketol-acid reductoiso 96.0 0.031 6.7E-07 55.5 8.7 80 88-179 11-90 (335)
159 PRK00676 hemA glutamyl-tRNA re 96.0 0.012 2.6E-07 58.8 5.9 63 90-167 171-233 (338)
160 cd05312 NAD_bind_1_malic_enz N 95.9 0.011 2.4E-07 57.4 5.2 104 89-192 21-139 (279)
161 cd05311 NAD_bind_2_malic_enz N 95.9 0.0076 1.6E-07 57.1 4.0 38 90-127 22-61 (226)
162 PLN00203 glutamyl-tRNA reducta 95.9 0.0076 1.7E-07 63.9 4.4 78 91-172 264-341 (519)
163 PRK13243 glyoxylate reductase; 95.9 0.011 2.4E-07 59.4 5.2 91 89-192 146-240 (333)
164 PRK00045 hemA glutamyl-tRNA re 95.9 0.0071 1.5E-07 62.8 3.9 75 91-172 180-254 (423)
165 PF04273 DUF442: Putative phos 95.9 0.053 1.2E-06 45.3 8.4 76 327-415 14-106 (110)
166 PRK06522 2-dehydropantoate 2-r 95.9 0.028 6E-07 55.3 7.9 92 95-190 2-98 (304)
167 KOG0069 Glyoxylate/hydroxypyru 95.8 0.017 3.8E-07 57.4 6.2 92 89-192 158-253 (336)
168 COG0111 SerA Phosphoglycerate 95.8 0.017 3.6E-07 57.8 6.1 148 90-256 139-310 (324)
169 COG0240 GpsA Glycerol-3-phosph 95.8 0.022 4.8E-07 56.4 6.7 98 94-192 2-105 (329)
170 PF02558 ApbA: Ketopantoate re 95.6 0.035 7.7E-07 48.6 6.9 84 96-182 1-89 (151)
171 PTZ00345 glycerol-3-phosphate 95.6 0.036 7.8E-07 56.3 7.6 97 92-191 10-128 (365)
172 PRK04148 hypothetical protein; 95.6 0.049 1.1E-06 47.1 7.3 93 92-191 16-108 (134)
173 COG1086 Predicted nucleoside-d 95.6 0.022 4.8E-07 59.9 6.1 94 74-168 232-333 (588)
174 TIGR00936 ahcY adenosylhomocys 95.5 0.024 5.1E-07 58.3 5.7 88 91-193 193-283 (406)
175 cd01075 NAD_bind_Leu_Phe_Val_D 95.4 0.042 9E-07 51.1 6.8 36 90-126 25-60 (200)
176 PRK14619 NAD(P)H-dependent gly 95.4 0.055 1.2E-06 53.7 8.1 75 94-192 5-82 (308)
177 PTZ00117 malate dehydrogenase; 95.4 0.018 4E-07 57.5 4.7 37 91-127 3-39 (319)
178 TIGR00518 alaDH alanine dehydr 95.4 0.019 4E-07 58.6 4.6 73 91-168 165-238 (370)
179 cd05191 NAD_bind_amino_acid_DH 95.3 0.022 4.8E-07 45.2 4.1 36 90-125 20-55 (86)
180 PRK08306 dipicolinate synthase 95.3 0.019 4.2E-07 56.6 4.5 72 90-170 149-220 (296)
181 PRK15438 erythronate-4-phospha 95.3 0.038 8.3E-07 56.3 6.7 87 90-192 113-207 (378)
182 PRK11908 NAD-dependent epimera 95.3 0.093 2E-06 52.6 9.6 102 94-198 2-123 (347)
183 TIGR03376 glycerol3P_DH glycer 95.2 0.062 1.3E-06 54.2 7.7 94 95-191 1-115 (342)
184 cd01078 NAD_bind_H4MPT_DH NADP 95.2 0.024 5.1E-07 52.2 4.3 81 90-172 25-109 (194)
185 PRK12480 D-lactate dehydrogena 95.2 0.086 1.9E-06 52.9 8.5 89 89-192 142-234 (330)
186 PF10087 DUF2325: Uncharacteri 95.1 0.21 4.6E-06 40.6 9.4 81 95-196 1-86 (97)
187 PRK05708 2-dehydropantoate 2-r 95.1 0.053 1.1E-06 53.8 6.9 93 94-191 3-103 (305)
188 TIGR00036 dapB dihydrodipicoli 95.1 0.18 3.8E-06 49.1 10.4 92 95-193 3-100 (266)
189 PRK13529 malate dehydrogenase; 95.1 0.086 1.9E-06 55.9 8.6 122 69-192 255-416 (563)
190 PRK12550 shikimate 5-dehydroge 95.1 0.042 9.1E-07 53.6 6.0 35 93-127 122-156 (272)
191 PRK05479 ketol-acid reductoiso 95.1 0.12 2.6E-06 51.7 9.3 78 89-177 13-90 (330)
192 TIGR02853 spore_dpaA dipicolin 95.1 0.035 7.6E-07 54.6 5.5 72 90-170 148-219 (287)
193 PRK00257 erythronate-4-phospha 95.1 0.044 9.6E-07 56.0 6.3 88 89-192 112-207 (381)
194 TIGR01244 conserved hypothetic 95.1 0.13 2.8E-06 44.6 8.4 79 326-415 13-106 (135)
195 TIGR01202 bchC 2-desacetyl-2-h 95.0 0.066 1.4E-06 52.9 7.3 84 91-186 143-226 (308)
196 PRK01438 murD UDP-N-acetylmura 95.0 0.035 7.5E-07 58.6 5.6 91 91-190 14-107 (480)
197 PF03446 NAD_binding_2: NAD bi 95.0 0.055 1.2E-06 48.4 6.1 110 94-204 2-136 (163)
198 PF01118 Semialdhyde_dh: Semia 95.0 0.11 2.3E-06 44.1 7.6 96 95-197 1-103 (121)
199 PF02719 Polysacc_synt_2: Poly 95.0 0.027 5.9E-07 55.1 4.2 74 96-169 1-86 (293)
200 PRK14175 bifunctional 5,10-met 95.0 0.077 1.7E-06 51.9 7.3 78 90-195 155-233 (286)
201 PRK08229 2-dehydropantoate 2-r 95.0 0.08 1.7E-06 53.1 7.8 95 94-191 3-106 (341)
202 PTZ00075 Adenosylhomocysteinas 94.9 0.031 6.8E-07 58.3 4.8 90 89-193 250-342 (476)
203 PLN02427 UDP-apiose/xylose syn 94.9 0.12 2.7E-06 52.7 9.2 110 89-198 10-141 (386)
204 PLN03139 formate dehydrogenase 94.9 0.075 1.6E-06 54.4 7.4 93 89-192 195-291 (386)
205 PF13460 NAD_binding_10: NADH( 94.9 0.16 3.5E-06 45.6 9.0 92 96-194 1-99 (183)
206 PRK15409 bifunctional glyoxyla 94.9 0.054 1.2E-06 54.2 6.2 90 90-192 142-236 (323)
207 TIGR01327 PGDH D-3-phosphoglyc 94.8 0.14 3.1E-06 54.7 9.5 92 89-192 134-229 (525)
208 TIGR03589 PseB UDP-N-acetylglu 94.8 0.055 1.2E-06 54.0 6.0 79 91-169 2-83 (324)
209 PRK14982 acyl-ACP reductase; P 94.8 0.027 5.8E-07 56.6 3.6 74 90-172 152-227 (340)
210 PRK00141 murD UDP-N-acetylmura 94.7 0.06 1.3E-06 56.7 6.5 94 88-190 10-103 (473)
211 PRK00066 ldh L-lactate dehydro 94.7 0.036 7.7E-07 55.3 4.5 73 92-170 5-83 (315)
212 PLN02306 hydroxypyruvate reduc 94.7 0.077 1.7E-06 54.3 7.0 101 89-192 161-272 (386)
213 PRK00094 gpsA NAD(P)H-dependen 94.7 0.06 1.3E-06 53.5 6.1 95 95-192 3-105 (325)
214 TIGR02622 CDP_4_6_dhtase CDP-g 94.7 0.16 3.5E-06 51.0 9.2 78 91-169 2-84 (349)
215 PRK07502 cyclohexadienyl dehyd 94.6 0.079 1.7E-06 52.5 6.7 79 94-180 7-86 (307)
216 PRK11790 D-3-phosphoglycerate 94.6 0.072 1.6E-06 55.1 6.5 89 89-192 147-239 (409)
217 PRK07634 pyrroline-5-carboxyla 94.6 0.072 1.6E-06 50.7 6.2 92 92-191 3-98 (245)
218 PF00670 AdoHcyase_NAD: S-aden 94.6 0.018 4E-07 51.3 1.8 73 89-173 19-91 (162)
219 PRK07819 3-hydroxybutyryl-CoA 94.6 0.031 6.7E-07 54.9 3.7 36 94-130 6-41 (286)
220 KOG1093 Predicted protein kina 94.6 0.0087 1.9E-07 62.4 -0.3 101 325-436 621-721 (725)
221 COG1063 Tdh Threonine dehydrog 94.6 0.075 1.6E-06 53.7 6.5 96 92-188 168-266 (350)
222 PRK07680 late competence prote 94.5 0.09 2E-06 51.1 6.7 90 95-192 2-96 (273)
223 PLN03129 NADP-dependent malic 94.5 0.055 1.2E-06 57.5 5.5 103 89-192 317-435 (581)
224 PRK06249 2-dehydropantoate 2-r 94.5 0.058 1.3E-06 53.6 5.4 82 94-180 6-92 (313)
225 PF02254 TrkA_N: TrkA-N domain 94.5 0.23 5.1E-06 41.2 8.3 83 96-183 1-85 (116)
226 COG1893 ApbA Ketopantoate redu 94.5 0.13 2.7E-06 51.2 7.6 87 94-185 1-92 (307)
227 PRK12439 NAD(P)H-dependent gly 94.4 0.1 2.2E-06 52.6 7.0 97 94-192 8-111 (341)
228 PRK12862 malic enzyme; Reviewe 94.4 0.045 9.7E-07 60.7 4.6 120 69-193 151-292 (763)
229 PRK08618 ornithine cyclodeamin 94.3 0.074 1.6E-06 53.2 5.7 92 92-192 126-221 (325)
230 PRK11880 pyrroline-5-carboxyla 94.3 0.11 2.3E-06 50.3 6.7 89 94-191 3-93 (267)
231 TIGR01915 npdG NADPH-dependent 94.3 0.099 2.1E-06 49.1 6.2 96 95-191 2-100 (219)
232 PRK07066 3-hydroxybutyryl-CoA 94.3 0.12 2.6E-06 51.6 7.0 101 94-195 8-121 (321)
233 PTZ00325 malate dehydrogenase; 94.2 0.16 3.4E-06 50.7 7.8 78 90-171 5-87 (321)
234 PRK14620 NAD(P)H-dependent gly 94.2 0.093 2E-06 52.4 6.2 84 95-181 2-92 (326)
235 PLN00106 malate dehydrogenase 94.2 0.18 3.8E-06 50.5 8.0 77 92-171 17-97 (323)
236 TIGR01850 argC N-acetyl-gamma- 94.2 0.17 3.6E-06 51.2 7.9 96 95-192 2-99 (346)
237 TIGR00465 ilvC ketol-acid redu 94.2 0.17 3.7E-06 50.4 7.8 70 91-171 1-70 (314)
238 PRK08125 bifunctional UDP-gluc 94.2 0.31 6.7E-06 53.6 10.6 106 90-198 312-437 (660)
239 PRK08374 homoserine dehydrogen 94.1 0.16 3.5E-06 51.1 7.7 98 94-192 3-122 (336)
240 PRK09496 trkA potassium transp 94.1 0.15 3.2E-06 53.2 7.7 94 91-187 229-324 (453)
241 COG0039 Mdh Malate/lactate deh 94.1 0.08 1.7E-06 52.4 5.3 77 94-171 1-80 (313)
242 PLN02712 arogenate dehydrogena 94.1 0.86 1.9E-05 50.2 13.7 93 90-194 366-462 (667)
243 PTZ00317 NADP-dependent malic 94.0 0.11 2.5E-06 54.9 6.4 122 69-192 257-415 (559)
244 PRK07232 bifunctional malic en 94.0 0.09 2E-06 58.1 5.9 120 69-193 143-284 (752)
245 PRK14618 NAD(P)H-dependent gly 93.9 0.093 2E-06 52.5 5.6 93 94-192 5-104 (328)
246 PRK00142 putative rhodanese-re 93.9 0.012 2.7E-07 58.4 -0.7 48 329-378 17-64 (314)
247 PRK03562 glutathione-regulated 93.9 0.15 3.2E-06 55.7 7.5 87 93-184 400-488 (621)
248 PRK06476 pyrroline-5-carboxyla 93.9 0.13 2.7E-06 49.7 6.2 90 95-192 2-93 (258)
249 PRK06223 malate dehydrogenase; 93.9 0.067 1.5E-06 53.0 4.4 33 94-126 3-35 (307)
250 cd08230 glucose_DH Glucose deh 93.9 0.16 3.5E-06 51.1 7.2 77 92-173 172-251 (355)
251 PLN02206 UDP-glucuronate decar 93.9 0.24 5.3E-06 51.7 8.7 104 90-198 116-238 (442)
252 cd01339 LDH-like_MDH L-lactate 93.8 0.053 1.2E-06 53.6 3.5 31 96-126 1-31 (300)
253 TIGR01763 MalateDH_bact malate 93.8 0.085 1.8E-06 52.4 4.9 74 94-171 2-80 (305)
254 PRK13304 L-aspartate dehydroge 93.8 0.19 4.1E-06 48.8 7.3 88 95-192 3-92 (265)
255 PRK06270 homoserine dehydrogen 93.8 0.16 3.6E-06 51.1 7.0 98 94-191 3-124 (341)
256 PRK12921 2-dehydropantoate 2-r 93.8 0.14 3.1E-06 50.3 6.5 91 95-191 2-101 (305)
257 KOG4169 15-hydroxyprostaglandi 93.8 0.15 3.2E-06 47.9 6.0 106 91-200 3-132 (261)
258 PF00070 Pyr_redox: Pyridine n 93.8 0.096 2.1E-06 40.7 4.2 30 95-125 1-30 (80)
259 cd01076 NAD_bind_1_Glu_DH NAD( 93.8 0.05 1.1E-06 51.6 3.0 37 89-125 27-63 (227)
260 PRK15181 Vi polysaccharide bio 93.8 0.38 8.1E-06 48.4 9.6 109 89-198 11-146 (348)
261 PRK01710 murD UDP-N-acetylmura 93.7 0.16 3.5E-06 53.3 7.1 95 89-190 10-106 (458)
262 PRK05225 ketol-acid reductoiso 93.7 0.26 5.6E-06 51.1 8.2 85 88-179 31-115 (487)
263 TIGR00507 aroE shikimate 5-deh 93.7 0.14 3E-06 49.8 6.1 36 91-127 115-150 (270)
264 PLN02166 dTDP-glucose 4,6-dehy 93.6 0.26 5.7E-06 51.4 8.4 102 92-198 119-239 (436)
265 PRK04308 murD UDP-N-acetylmura 93.6 0.24 5.2E-06 51.7 8.1 91 91-190 3-96 (445)
266 PRK02006 murD UDP-N-acetylmura 93.6 0.21 4.5E-06 53.0 7.7 36 91-127 5-40 (498)
267 PF00056 Ldh_1_N: lactate/mala 93.6 0.098 2.1E-06 45.7 4.4 71 95-171 2-80 (141)
268 PLN00141 Tic62-NAD(P)-related 93.5 0.55 1.2E-05 44.7 9.9 76 89-168 13-93 (251)
269 PLN02602 lactate dehydrogenase 93.5 0.07 1.5E-06 53.9 3.8 71 94-171 38-116 (350)
270 PRK06035 3-hydroxyacyl-CoA deh 93.5 0.084 1.8E-06 51.9 4.3 34 94-128 4-37 (291)
271 PRK09880 L-idonate 5-dehydroge 93.5 0.18 3.9E-06 50.6 6.7 89 91-185 168-260 (343)
272 PRK13581 D-3-phosphoglycerate 93.4 0.15 3.2E-06 54.6 6.3 91 89-192 136-230 (526)
273 PRK09599 6-phosphogluconate de 93.4 0.26 5.6E-06 48.7 7.6 101 95-196 2-123 (301)
274 PTZ00082 L-lactate dehydrogena 93.4 0.09 2E-06 52.5 4.3 72 91-169 4-83 (321)
275 PRK12861 malic enzyme; Reviewe 93.4 0.088 1.9E-06 58.1 4.6 121 69-194 147-289 (764)
276 PRK07679 pyrroline-5-carboxyla 93.4 0.24 5.2E-06 48.3 7.2 91 93-191 3-98 (279)
277 PRK14194 bifunctional 5,10-met 93.3 0.24 5.2E-06 48.8 7.0 80 88-195 154-234 (301)
278 PRK08293 3-hydroxybutyryl-CoA 93.3 0.15 3.3E-06 49.9 5.7 33 94-127 4-36 (287)
279 COG1052 LdhA Lactate dehydroge 93.3 0.15 3.3E-06 51.0 5.7 90 89-192 142-236 (324)
280 cd00300 LDH_like L-lactate deh 93.3 0.15 3.3E-06 50.4 5.7 69 96-171 1-77 (300)
281 PRK09310 aroDE bifunctional 3- 93.3 0.072 1.6E-06 56.2 3.6 71 90-170 329-400 (477)
282 COG0771 MurD UDP-N-acetylmuram 93.3 0.23 5.1E-06 51.6 7.2 90 91-189 5-97 (448)
283 PRK13302 putative L-aspartate 93.2 0.23 5.1E-06 48.4 6.8 90 92-190 5-96 (271)
284 PRK08605 D-lactate dehydrogena 93.2 0.19 4.2E-06 50.4 6.4 91 89-193 142-237 (332)
285 TIGR00872 gnd_rel 6-phosphoglu 93.2 0.22 4.7E-06 49.2 6.6 32 95-127 2-33 (298)
286 PRK12491 pyrroline-5-carboxyla 93.1 0.17 3.7E-06 49.3 5.7 91 93-192 2-97 (272)
287 PRK06197 short chain dehydroge 93.1 0.18 3.9E-06 49.7 5.9 43 83-126 6-49 (306)
288 PRK06545 prephenate dehydrogen 93.1 0.22 4.8E-06 50.6 6.6 81 94-181 1-81 (359)
289 cd05211 NAD_bind_Glu_Leu_Phe_V 93.0 0.1 2.3E-06 49.1 3.9 39 89-127 19-57 (217)
290 PTZ00431 pyrroline carboxylate 93.0 0.37 7.9E-06 46.6 7.8 82 93-190 3-88 (260)
291 PLN02695 GDP-D-mannose-3',5'-e 93.0 0.52 1.1E-05 47.9 9.3 102 92-198 20-142 (370)
292 TIGR03026 NDP-sugDHase nucleot 93.0 0.45 9.7E-06 49.2 8.9 76 95-171 2-87 (411)
293 TIGR02992 ectoine_eutC ectoine 93.0 0.13 2.7E-06 51.6 4.6 72 93-170 129-204 (326)
294 PF01408 GFO_IDH_MocA: Oxidore 92.9 0.23 5.1E-06 41.4 5.6 86 95-190 2-91 (120)
295 PRK12367 short chain dehydroge 92.9 0.34 7.4E-06 46.3 7.4 41 86-127 7-48 (245)
296 PRK04690 murD UDP-N-acetylmura 92.9 0.26 5.7E-06 51.9 7.1 92 91-190 6-98 (468)
297 PF10727 Rossmann-like: Rossma 92.9 0.084 1.8E-06 45.3 2.7 89 92-192 9-104 (127)
298 PRK13303 L-aspartate dehydroge 92.8 0.52 1.1E-05 45.8 8.6 89 94-192 2-92 (265)
299 PRK06928 pyrroline-5-carboxyla 92.8 0.3 6.6E-06 47.6 7.0 90 95-192 3-98 (277)
300 PRK02705 murD UDP-N-acetylmura 92.8 0.36 7.8E-06 50.5 8.0 94 94-190 1-97 (459)
301 COG0281 SfcA Malic enzyme [Ene 92.7 0.2 4.4E-06 51.0 5.6 123 64-194 154-301 (432)
302 PRK14179 bifunctional 5,10-met 92.6 0.3 6.6E-06 47.7 6.6 79 89-195 154-233 (284)
303 cd08239 THR_DH_like L-threonin 92.6 0.26 5.7E-06 49.0 6.5 80 92-173 163-244 (339)
304 TIGR03466 HpnA hopanoid-associ 92.6 0.74 1.6E-05 45.2 9.6 69 95-168 2-72 (328)
305 PRK02472 murD UDP-N-acetylmura 92.5 0.27 5.8E-06 51.3 6.6 92 91-190 3-97 (447)
306 PRK06129 3-hydroxyacyl-CoA deh 92.5 0.21 4.6E-06 49.5 5.6 33 95-128 4-36 (308)
307 PRK03659 glutathione-regulated 92.5 0.36 7.7E-06 52.6 7.7 88 93-185 400-489 (601)
308 PLN02688 pyrroline-5-carboxyla 92.5 0.38 8.3E-06 46.4 7.2 86 95-191 2-94 (266)
309 PRK08818 prephenate dehydrogen 92.4 0.48 1E-05 48.3 8.0 70 91-181 2-72 (370)
310 PRK14188 bifunctional 5,10-met 92.4 0.35 7.6E-06 47.6 6.8 78 90-195 155-233 (296)
311 PTZ00142 6-phosphogluconate de 92.4 0.27 5.8E-06 51.8 6.3 102 94-196 2-130 (470)
312 PRK14189 bifunctional 5,10-met 92.4 0.43 9.3E-06 46.7 7.3 79 89-195 154-233 (285)
313 TIGR01181 dTDP_gluc_dehyt dTDP 92.4 0.8 1.7E-05 44.6 9.4 75 95-169 1-82 (317)
314 PLN02572 UDP-sulfoquinovose sy 92.3 0.77 1.7E-05 48.0 9.7 37 89-126 43-80 (442)
315 KOG0022 Alcohol dehydrogenase, 92.3 0.42 9E-06 47.0 7.0 93 92-189 192-292 (375)
316 PRK12490 6-phosphogluconate de 92.3 0.41 9E-06 47.2 7.3 31 95-126 2-32 (299)
317 PRK08264 short chain dehydroge 92.3 0.45 9.7E-06 44.6 7.3 37 90-126 3-40 (238)
318 PRK07417 arogenate dehydrogena 92.2 0.38 8.3E-06 46.9 6.8 76 95-181 2-78 (279)
319 PRK09496 trkA potassium transp 92.2 0.65 1.4E-05 48.4 9.0 91 95-189 2-95 (453)
320 PRK03369 murD UDP-N-acetylmura 92.2 0.37 8E-06 51.1 7.1 89 92-190 11-99 (488)
321 KOG0024 Sorbitol dehydrogenase 92.1 0.46 1E-05 46.9 7.1 98 92-192 169-273 (354)
322 PRK00683 murD UDP-N-acetylmura 92.1 0.26 5.6E-06 51.1 5.8 87 92-190 2-88 (418)
323 CHL00194 ycf39 Ycf39; Provisio 92.1 0.83 1.8E-05 45.2 9.3 95 95-194 2-111 (317)
324 PRK05875 short chain dehydroge 92.1 0.23 5E-06 47.8 5.1 36 90-126 4-40 (276)
325 PRK07531 bifunctional 3-hydrox 92.1 0.39 8.5E-06 51.0 7.2 76 94-171 5-91 (495)
326 cd00704 MDH Malate dehydrogena 92.0 0.65 1.4E-05 46.5 8.4 71 94-171 1-87 (323)
327 cd08281 liver_ADH_like1 Zinc-d 92.0 0.28 6.1E-06 49.7 5.9 98 92-191 191-289 (371)
328 PRK09242 tropinone reductase; 92.0 0.36 7.8E-06 45.9 6.3 36 90-126 6-42 (257)
329 PRK10217 dTDP-glucose 4,6-dehy 92.0 0.95 2.1E-05 45.3 9.7 75 94-169 2-83 (355)
330 PLN02253 xanthoxin dehydrogena 92.0 0.35 7.6E-06 46.7 6.3 36 90-126 15-51 (280)
331 PRK13301 putative L-aspartate 92.0 0.4 8.6E-06 46.3 6.4 24 94-117 3-26 (267)
332 COG1712 Predicted dinucleotide 92.0 0.34 7.4E-06 45.4 5.7 87 95-192 2-91 (255)
333 TIGR01505 tartro_sem_red 2-hyd 91.9 0.69 1.5E-05 45.3 8.3 66 95-171 1-66 (291)
334 PLN02256 arogenate dehydrogena 91.9 0.36 7.8E-06 47.9 6.2 79 90-180 33-112 (304)
335 cd05294 LDH-like_MDH_nadp A la 91.8 0.26 5.6E-06 49.0 5.2 77 94-171 1-83 (309)
336 PRK08291 ectoine utilization p 91.8 0.24 5.3E-06 49.7 5.0 72 93-170 132-207 (330)
337 PRK08217 fabG 3-ketoacyl-(acyl 91.8 0.35 7.7E-06 45.5 6.0 36 91-127 3-39 (253)
338 TIGR01832 kduD 2-deoxy-D-gluco 91.8 0.34 7.4E-06 45.7 5.8 34 91-125 3-37 (248)
339 smart00846 Gp_dh_N Glyceraldeh 91.7 0.37 8.1E-06 42.5 5.6 92 95-189 2-115 (149)
340 PRK07774 short chain dehydroge 91.7 0.36 7.7E-06 45.6 5.9 36 90-126 3-39 (250)
341 PRK06194 hypothetical protein; 91.7 0.37 8.1E-06 46.6 6.1 78 91-169 4-92 (287)
342 PRK10669 putative cation:proto 91.5 0.55 1.2E-05 50.6 7.7 76 93-173 417-494 (558)
343 PRK07063 short chain dehydroge 91.5 0.46 1E-05 45.3 6.4 36 90-126 4-40 (260)
344 PRK06141 ornithine cyclodeamin 91.5 0.3 6.4E-06 48.7 5.2 76 90-171 122-200 (314)
345 PRK09987 dTDP-4-dehydrorhamnos 91.5 0.6 1.3E-05 45.9 7.4 84 95-195 2-106 (299)
346 PRK06125 short chain dehydroge 91.4 0.43 9.3E-06 45.5 6.1 36 90-126 4-40 (259)
347 PRK05872 short chain dehydroge 91.4 0.43 9.3E-06 46.8 6.2 37 90-127 6-43 (296)
348 TIGR03451 mycoS_dep_FDH mycoth 91.4 0.38 8.2E-06 48.5 6.0 35 92-126 176-210 (358)
349 PRK06139 short chain dehydroge 91.3 0.36 7.7E-06 48.4 5.6 37 90-127 4-41 (330)
350 PRK07231 fabG 3-ketoacyl-(acyl 91.2 0.44 9.6E-06 44.8 6.0 37 90-127 2-39 (251)
351 PLN03209 translocon at the inn 91.2 0.99 2.1E-05 48.5 9.0 78 91-169 78-168 (576)
352 PRK10537 voltage-gated potassi 91.2 0.98 2.1E-05 46.5 8.7 88 91-185 238-327 (393)
353 PRK11064 wecC UDP-N-acetyl-D-m 91.2 0.75 1.6E-05 47.7 8.0 35 93-128 3-37 (415)
354 PLN02653 GDP-mannose 4,6-dehyd 91.2 1.2 2.6E-05 44.4 9.3 78 91-169 4-92 (340)
355 PRK05866 short chain dehydroge 91.2 0.34 7.4E-06 47.5 5.2 36 90-126 37-73 (293)
356 cd05290 LDH_3 A subgroup of L- 91.2 0.23 5.1E-06 49.3 4.1 71 95-171 1-79 (307)
357 PRK07523 gluconate 5-dehydroge 91.1 0.46 9.9E-06 45.1 6.0 36 90-126 7-43 (255)
358 PRK00421 murC UDP-N-acetylmura 91.1 0.19 4.1E-06 52.8 3.6 89 91-190 5-95 (461)
359 PRK03806 murD UDP-N-acetylmura 91.1 0.7 1.5E-05 48.1 7.8 91 91-190 4-94 (438)
360 PRK00436 argC N-acetyl-gamma-g 91.1 0.88 1.9E-05 45.9 8.3 99 94-196 3-104 (343)
361 PLN02657 3,8-divinyl protochlo 91.1 1.2 2.7E-05 45.6 9.4 100 92-194 59-183 (390)
362 PLN00016 RNA-binding protein; 91.0 1.1 2.3E-05 45.7 8.9 106 88-198 47-170 (378)
363 COG0287 TyrA Prephenate dehydr 91.0 0.78 1.7E-05 44.9 7.5 93 93-191 3-97 (279)
364 PRK08277 D-mannonate oxidoredu 91.0 0.47 1E-05 45.7 6.0 36 90-126 7-43 (278)
365 TIGR02130 dapB_plant dihydrodi 91.0 1.5 3.4E-05 42.6 9.4 93 95-193 2-101 (275)
366 PRK07340 ornithine cyclodeamin 91.0 0.26 5.5E-06 48.9 4.1 75 90-171 122-199 (304)
367 PRK04663 murD UDP-N-acetylmura 91.0 0.6 1.3E-05 48.6 7.1 93 90-190 3-97 (438)
368 PRK12823 benD 1,6-dihydroxycyc 90.9 0.52 1.1E-05 44.8 6.2 37 89-126 4-41 (260)
369 PLN02740 Alcohol dehydrogenase 90.8 0.58 1.3E-05 47.7 6.8 35 92-126 198-232 (381)
370 PRK08265 short chain dehydroge 90.8 0.56 1.2E-05 44.9 6.3 36 90-126 3-39 (261)
371 PRK12826 3-ketoacyl-(acyl-carr 90.8 0.44 9.6E-06 44.8 5.5 36 90-126 3-39 (251)
372 PRK06138 short chain dehydroge 90.8 0.51 1.1E-05 44.5 5.9 35 91-126 3-38 (252)
373 PRK08594 enoyl-(acyl carrier p 90.8 0.69 1.5E-05 44.3 6.9 35 90-125 4-41 (257)
374 cd01338 MDH_choloroplast_like 90.7 0.46 1E-05 47.5 5.7 33 93-125 2-41 (322)
375 COG2084 MmsB 3-hydroxyisobutyr 90.7 1.4 3E-05 43.3 8.8 34 94-128 1-34 (286)
376 PLN02214 cinnamoyl-CoA reducta 90.7 1.4 3.1E-05 44.2 9.3 102 91-193 8-127 (342)
377 PLN02520 bifunctional 3-dehydr 90.7 0.25 5.5E-06 52.8 4.1 35 91-126 377-411 (529)
378 PRK07666 fabG 3-ketoacyl-(acyl 90.6 0.38 8.3E-06 45.1 4.9 37 90-127 4-41 (239)
379 PRK01390 murD UDP-N-acetylmura 90.6 0.4 8.6E-06 50.3 5.4 36 90-126 6-41 (460)
380 PF02882 THF_DHG_CYH_C: Tetrah 90.6 0.6 1.3E-05 41.8 5.7 79 90-196 33-112 (160)
381 PLN02240 UDP-glucose 4-epimera 90.6 1.1 2.4E-05 44.7 8.5 78 91-169 3-90 (352)
382 PF02629 CoA_binding: CoA bind 90.6 1.4 3.1E-05 35.5 7.6 89 92-190 2-91 (96)
383 COG0665 DadA Glycine/D-amino a 90.6 0.31 6.7E-06 49.4 4.5 43 92-135 3-45 (387)
384 TIGR00715 precor6x_red precorr 90.6 1.4 3.1E-05 42.5 8.7 93 95-191 2-98 (256)
385 PRK14176 bifunctional 5,10-met 90.5 0.72 1.6E-05 45.1 6.7 79 89-195 160-239 (287)
386 PF02737 3HCDH_N: 3-hydroxyacy 90.5 0.3 6.5E-06 44.5 3.9 35 95-130 1-35 (180)
387 TIGR03570 NeuD_NnaD sugar O-ac 90.5 1.1 2.4E-05 40.7 7.7 87 95-189 1-87 (201)
388 PF03447 NAD_binding_3: Homose 90.4 0.77 1.7E-05 38.4 6.1 83 100-192 1-90 (117)
389 PRK08251 short chain dehydroge 90.4 0.63 1.4E-05 43.9 6.2 34 93-127 2-36 (248)
390 COG0686 Ald Alanine dehydrogen 90.4 0.72 1.6E-05 45.4 6.5 77 91-171 166-242 (371)
391 cd05292 LDH_2 A subgroup of L- 90.4 0.31 6.8E-06 48.3 4.2 69 95-171 2-78 (308)
392 PLN00198 anthocyanidin reducta 90.4 1.6 3.4E-05 43.5 9.3 78 91-169 7-89 (338)
393 TIGR01373 soxB sarcosine oxida 90.3 0.36 7.8E-06 49.5 4.8 43 93-135 30-73 (407)
394 TIGR01214 rmlD dTDP-4-dehydror 90.3 1.3 2.9E-05 42.7 8.6 30 95-125 1-31 (287)
395 PRK07062 short chain dehydroge 90.3 0.72 1.6E-05 44.0 6.6 36 90-126 5-41 (265)
396 PRK08057 cobalt-precorrin-6x r 90.3 1.8 3.8E-05 41.7 9.1 91 93-190 2-97 (248)
397 PRK06198 short chain dehydroge 90.3 0.63 1.4E-05 44.2 6.1 37 90-126 3-40 (260)
398 PRK07060 short chain dehydroge 90.3 0.43 9.2E-06 44.8 4.9 35 90-125 6-41 (245)
399 PRK05867 short chain dehydroge 90.3 0.6 1.3E-05 44.3 6.0 36 90-126 6-42 (253)
400 cd01493 APPBP1_RUB Ubiquitin a 90.2 0.34 7.3E-06 50.3 4.4 41 234-275 384-424 (425)
401 PLN02260 probable rhamnose bio 90.2 1.3 2.9E-05 48.7 9.4 108 91-198 4-137 (668)
402 PRK12320 hypothetical protein; 90.2 1.5 3.3E-05 48.4 9.6 92 95-194 2-103 (699)
403 PF11336 DUF3138: Protein of u 90.2 0.82 1.8E-05 46.4 6.8 59 13-71 23-85 (514)
404 PRK01368 murD UDP-N-acetylmura 90.2 0.47 1E-05 49.8 5.5 88 92-190 5-92 (454)
405 PLN02896 cinnamyl-alcohol dehy 90.2 1.4 3.1E-05 44.1 8.9 77 92-169 9-88 (353)
406 PRK08655 prephenate dehydrogen 90.2 0.78 1.7E-05 47.9 7.1 89 95-193 2-93 (437)
407 PRK07067 sorbitol dehydrogenas 90.1 0.63 1.4E-05 44.2 6.0 37 90-127 3-40 (257)
408 PRK06392 homoserine dehydrogen 90.1 0.9 2E-05 45.5 7.2 95 95-192 2-116 (326)
409 PRK12939 short chain dehydroge 90.1 0.65 1.4E-05 43.7 6.0 36 90-126 4-40 (250)
410 PRK08589 short chain dehydroge 90.1 0.64 1.4E-05 44.8 6.1 36 90-126 3-39 (272)
411 cd05293 LDH_1 A subgroup of L- 90.1 0.35 7.5E-06 48.2 4.2 35 93-127 3-38 (312)
412 COG1062 AdhC Zn-dependent alco 90.1 0.89 1.9E-05 45.3 6.9 96 92-195 185-288 (366)
413 PLN02662 cinnamyl-alcohol dehy 90.0 0.76 1.6E-05 45.2 6.6 75 93-168 4-84 (322)
414 PRK06500 short chain dehydroge 90.0 0.65 1.4E-05 43.7 5.9 36 90-126 3-39 (249)
415 PRK12748 3-ketoacyl-(acyl-carr 90.0 0.76 1.6E-05 43.7 6.4 36 90-126 2-40 (256)
416 PRK12771 putative glutamate sy 90.0 0.62 1.3E-05 50.3 6.4 35 91-126 135-169 (564)
417 PTZ00188 adrenodoxin reductase 89.9 1 2.2E-05 47.6 7.6 78 92-171 38-137 (506)
418 COG1064 AdhP Zn-dependent alco 89.9 0.8 1.7E-05 45.9 6.6 32 93-125 167-198 (339)
419 PRK06949 short chain dehydroge 89.9 0.67 1.4E-05 43.9 5.9 35 91-126 7-42 (258)
420 PRK10792 bifunctional 5,10-met 89.9 0.99 2.2E-05 44.2 7.1 79 89-195 155-234 (285)
421 TIGR01472 gmd GDP-mannose 4,6- 89.9 1.7 3.8E-05 43.3 9.2 104 94-198 1-137 (343)
422 PRK11259 solA N-methyltryptoph 89.9 0.35 7.5E-06 48.9 4.1 35 93-128 3-37 (376)
423 PRK03803 murD UDP-N-acetylmura 89.8 0.94 2E-05 47.3 7.4 89 93-190 6-97 (448)
424 PRK04207 glyceraldehyde-3-phos 89.8 1.1 2.4E-05 45.2 7.6 95 94-193 2-110 (341)
425 PRK12409 D-amino acid dehydrog 89.8 0.35 7.6E-06 49.7 4.2 33 94-127 2-34 (410)
426 cd00650 LDH_MDH_like NAD-depen 89.8 0.33 7.3E-06 46.9 3.8 69 96-170 1-80 (263)
427 PRK12769 putative oxidoreducta 89.8 0.6 1.3E-05 51.3 6.2 62 64-126 296-359 (654)
428 PF00106 adh_short: short chai 89.7 0.48 1E-05 41.6 4.5 76 94-169 1-89 (167)
429 PRK07814 short chain dehydroge 89.7 0.71 1.5E-05 44.2 6.0 35 91-126 8-43 (263)
430 PRK11730 fadB multifunctional 89.7 0.31 6.7E-06 54.1 3.9 35 94-129 314-348 (715)
431 KOG0409 Predicted dehydrogenas 89.7 2.5 5.5E-05 41.4 9.5 136 66-205 7-173 (327)
432 PRK11559 garR tartronate semia 89.7 1.2 2.6E-05 43.7 7.6 89 94-194 3-98 (296)
433 TIGR03366 HpnZ_proposed putati 89.6 0.73 1.6E-05 44.7 6.0 34 92-125 120-153 (280)
434 PRK08213 gluconate 5-dehydroge 89.6 0.72 1.6E-05 43.9 5.9 36 90-126 9-45 (259)
435 cd08237 ribitol-5-phosphate_DH 89.6 0.57 1.2E-05 47.0 5.4 35 92-126 163-198 (341)
436 PRK06349 homoserine dehydrogen 89.6 1.2 2.6E-05 46.4 7.9 89 93-191 3-103 (426)
437 PRK14191 bifunctional 5,10-met 89.5 0.77 1.7E-05 44.9 6.0 80 88-195 152-232 (285)
438 PF01266 DAO: FAD dependent ox 89.5 0.41 8.9E-06 47.4 4.3 34 95-129 1-34 (358)
439 PRK11150 rfaD ADP-L-glycero-D- 89.5 0.75 1.6E-05 45.1 6.1 97 96-198 2-121 (308)
440 PRK12829 short chain dehydroge 89.5 0.78 1.7E-05 43.6 6.1 37 89-126 7-44 (264)
441 TIGR01758 MDH_euk_cyt malate d 89.5 0.81 1.7E-05 45.8 6.3 32 95-126 1-39 (324)
442 PRK15059 tartronate semialdehy 89.4 2.1 4.6E-05 42.1 9.2 31 95-126 2-32 (292)
443 PRK05086 malate dehydrogenase; 89.4 1.2 2.7E-05 44.3 7.5 73 94-171 1-80 (312)
444 PRK05854 short chain dehydroge 89.4 0.78 1.7E-05 45.4 6.2 36 90-126 11-47 (313)
445 PRK06079 enoyl-(acyl carrier p 89.4 0.73 1.6E-05 43.9 5.8 35 90-125 4-41 (252)
446 PRK07109 short chain dehydroge 89.4 0.68 1.5E-05 46.4 5.8 36 90-126 5-41 (334)
447 TIGR02279 PaaC-3OHAcCoADH 3-hy 89.4 0.3 6.6E-06 51.9 3.3 34 93-127 5-38 (503)
448 PRK07035 short chain dehydroge 89.4 0.78 1.7E-05 43.4 5.9 36 90-126 5-41 (252)
449 PRK13394 3-hydroxybutyrate deh 89.4 0.85 1.8E-05 43.3 6.2 36 90-126 4-40 (262)
450 PRK07478 short chain dehydroge 89.3 0.79 1.7E-05 43.5 6.0 36 90-126 3-39 (254)
451 PRK07326 short chain dehydroge 89.3 0.77 1.7E-05 42.9 5.8 35 91-126 4-39 (237)
452 PRK07576 short chain dehydroge 89.2 0.57 1.2E-05 45.0 4.9 37 89-126 5-42 (264)
453 TIGR02818 adh_III_F_hyde S-(hy 89.2 1.1 2.4E-05 45.3 7.3 35 92-126 185-219 (368)
454 TIGR01851 argC_other N-acetyl- 89.1 1.8 3.9E-05 42.9 8.3 82 94-198 2-87 (310)
455 PRK07856 short chain dehydroge 89.1 1.3 2.7E-05 42.0 7.2 36 90-126 3-39 (252)
456 TIGR01921 DAP-DH diaminopimela 89.1 1 2.2E-05 44.9 6.6 87 93-191 3-90 (324)
457 KOG3636 Uncharacterized conser 89.1 1.1 2.4E-05 45.8 6.8 106 328-434 309-427 (669)
458 PRK12744 short chain dehydroge 89.1 0.93 2E-05 43.1 6.2 33 90-122 5-38 (257)
459 TIGR03325 BphB_TodD cis-2,3-di 89.0 0.89 1.9E-05 43.4 6.1 34 91-125 3-37 (262)
460 PF05368 NmrA: NmrA-like famil 89.0 1.9 4.1E-05 40.4 8.2 91 96-191 1-100 (233)
461 PRK12828 short chain dehydroge 88.9 0.73 1.6E-05 42.9 5.3 37 90-127 4-41 (239)
462 cd05298 GH4_GlvA_pagL_like Gly 88.9 1.2 2.6E-05 46.5 7.3 97 95-199 2-113 (437)
463 cd01079 NAD_bind_m-THF_DH NAD 88.9 1.2 2.7E-05 40.9 6.5 95 89-194 58-158 (197)
464 PF03721 UDPG_MGDP_dh_N: UDP-g 88.9 0.31 6.7E-06 44.7 2.6 76 95-171 2-87 (185)
465 PRK15461 NADH-dependent gamma- 88.8 1.6 3.4E-05 43.1 7.7 33 94-127 2-34 (296)
466 PRK12429 3-hydroxybutyrate deh 88.8 0.91 2E-05 42.9 5.9 34 91-125 2-36 (258)
467 PRK06398 aldose dehydrogenase; 88.8 1.6 3.4E-05 41.8 7.6 36 90-126 3-39 (258)
468 TIGR00873 gnd 6-phosphoglucona 88.7 0.99 2.1E-05 47.5 6.6 100 95-195 1-126 (467)
469 PF02571 CbiJ: Precorrin-6x re 88.7 2.1 4.5E-05 41.2 8.3 90 94-190 1-98 (249)
470 PRK14183 bifunctional 5,10-met 88.7 1.4 3E-05 43.1 7.1 80 88-195 152-232 (281)
471 PRK12809 putative oxidoreducta 88.7 0.9 1.9E-05 49.8 6.5 63 64-127 279-343 (639)
472 PRK11154 fadJ multifunctional 88.7 0.5 1.1E-05 52.5 4.5 89 94-184 310-414 (708)
473 PRK10309 galactitol-1-phosphat 88.7 1.1 2.4E-05 44.8 6.7 93 92-186 160-255 (347)
474 PF04321 RmlD_sub_bind: RmlD s 88.6 0.54 1.2E-05 46.1 4.3 81 95-194 2-102 (286)
475 PRK08226 short chain dehydroge 88.6 0.78 1.7E-05 43.7 5.4 36 90-126 3-39 (263)
476 PRK05717 oxidoreductase; Valid 88.6 0.94 2E-05 43.0 5.9 36 90-126 7-43 (255)
477 PRK08085 gluconate 5-dehydroge 88.6 0.97 2.1E-05 42.9 6.0 36 90-126 6-42 (254)
478 PRK07831 short chain dehydroge 88.5 1.1 2.4E-05 42.7 6.4 35 90-125 14-50 (262)
479 cd01336 MDH_cytoplasmic_cytoso 88.5 1 2.2E-05 45.2 6.2 73 94-171 3-89 (325)
480 PLN02702 L-idonate 5-dehydroge 88.5 1.5 3.2E-05 44.2 7.6 35 92-126 181-215 (364)
481 PLN02353 probable UDP-glucose 88.5 0.24 5.1E-06 52.2 1.7 79 94-172 2-90 (473)
482 PRK07890 short chain dehydroge 88.5 0.92 2E-05 43.0 5.8 35 91-126 3-38 (258)
483 TIGR03206 benzo_BadH 2-hydroxy 88.5 0.93 2E-05 42.7 5.7 36 91-127 1-37 (250)
484 smart00859 Semialdhyde_dh Semi 88.4 2.6 5.6E-05 35.4 7.9 91 95-192 1-99 (122)
485 PRK10084 dTDP-glucose 4,6 dehy 88.4 2.3 4.9E-05 42.6 8.8 74 95-169 2-82 (352)
486 PRK06935 2-deoxy-D-gluconate 3 88.4 1.1 2.3E-05 42.7 6.2 36 90-126 12-48 (258)
487 PLN02586 probable cinnamyl alc 88.3 1.4 3E-05 44.5 7.3 77 92-173 183-260 (360)
488 PRK12727 flagellar biosynthesi 88.3 2.3 5E-05 45.2 8.9 38 93-130 350-393 (559)
489 PRK06113 7-alpha-hydroxysteroi 88.3 0.98 2.1E-05 42.9 5.9 35 90-125 8-43 (255)
490 TIGR01087 murD UDP-N-acetylmur 88.3 1.5 3.2E-05 45.6 7.6 87 95-190 1-91 (433)
491 PRK05808 3-hydroxybutyryl-CoA 88.3 0.53 1.2E-05 45.9 4.0 34 94-128 4-37 (282)
492 PLN02968 Probable N-acetyl-gam 88.3 2.2 4.8E-05 43.7 8.6 98 92-193 37-135 (381)
493 PRK05335 tRNA (uracil-5-)-meth 88.3 0.52 1.1E-05 48.8 4.1 33 93-126 2-34 (436)
494 KOG1429 dTDP-glucose 4-6-dehyd 88.3 1.7 3.6E-05 42.4 7.1 101 92-199 26-147 (350)
495 PRK10675 UDP-galactose-4-epime 88.2 2.6 5.6E-05 41.8 9.1 72 95-168 2-81 (338)
496 cd05296 GH4_P_beta_glucosidase 88.2 0.81 1.8E-05 47.5 5.5 94 95-198 2-113 (419)
497 PRK05876 short chain dehydroge 88.2 1 2.2E-05 43.7 5.9 35 91-126 4-39 (275)
498 TIGR00978 asd_EA aspartate-sem 88.2 2.1 4.6E-05 43.1 8.4 101 95-197 2-110 (341)
499 PLN02852 ferredoxin-NADP+ redu 88.2 1.2 2.7E-05 47.1 6.9 35 92-127 25-61 (491)
500 PRK07530 3-hydroxybutyryl-CoA 88.2 0.56 1.2E-05 46.0 4.1 34 93-127 4-37 (292)
No 1
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.1e-99 Score=714.57 Aligned_cols=369 Identities=56% Similarity=0.992 Sum_probs=348.2
Q ss_pred CCCCCCCHHHHhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-----
Q 013384 61 AVDYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR----- 135 (444)
Q Consensus 61 ~~~~~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R----- 135 (444)
.+...||.+|+.||+|||++|+||..||.+|++++|+||||||+||+++.||+.+|||+|+|||+|.||.|||||
T Consensus 34 ~~~~~Ls~dei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ 113 (427)
T KOG2017|consen 34 SREAGLSLDEILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHT 113 (427)
T ss_pred ccccCCCHHHHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhh
Confidence 446689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCc
Q 013384 136 ------------------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLE 197 (444)
Q Consensus 136 ------------------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~ 197 (444)
+||+++|..|++.++++|+++++++||+|+|||||+++||+|+|+|+..|+|+|++++++|+
T Consensus 114 ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~E 193 (427)
T KOG2017|consen 114 EARVGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWE 193 (427)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcCCccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCCCCCceeecCCCCCCCccCCcccCCCcccchhHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEE
Q 013384 198 GQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVK 277 (444)
Q Consensus 198 G~l~~~~~~~~~C~~C~~~~~~~~~~~~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~~~~~~~~~~~d~~~~~~~~~~ 277 (444)
||++++++..+|||||+||++|+++++++|.++|++||+++++|+|||+|++|+++|..+++.++++.||+++..|+.++
T Consensus 194 GQLtvYny~~GPCYRClFP~Ppp~~~vt~C~dgGVlGpv~GviG~mQALE~iKli~~~~~~~s~~lllfdg~~~~~r~ir 273 (427)
T KOG2017|consen 194 GQLTVYNYNNGPCYRCLFPNPPPPEAVTNCADGGVLGPVTGVIGCMQALETIKLIAGIGESLSGRLLLFDGLSGHFRTIR 273 (427)
T ss_pred ceeEEeecCCCceeeecCCCCcChHHhcccccCceeecchhhhhHHHHHHHHHHHHccCccCCcceEEEecccceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCccCCCCcccccccccccccccccCCCCCcccccccCCCCCccCHHHHHHHHhcCCCcEEEEecCccccccc
Q 013384 278 IRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSPLSTLPLKLNLLSADSRISSKEYKEKVVNGEAHILVDVRPAHHFRIV 357 (444)
Q Consensus 278 ~~~r~~~C~~Cg~~~~~~~~~i~~~dy~~fcg~~~~~~~~~~~~l~~~~~Is~~el~~~l~~~~~~~lIDVR~~~ef~~g 357 (444)
+|+|+++|.+||+++++|.. +||+.|||++++..+ ++++|++.+|||+.||++++++++.+++||||++.||+++
T Consensus 274 lR~r~~~C~~Cg~n~tit~~----~dYe~fCg~~~~~~~-~l~lL~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~ 348 (427)
T KOG2017|consen 274 LRSRRPKCAVCGKNPTITSL----IDYELFCGSSATDKC-PLKLLEPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEIC 348 (427)
T ss_pred eccCCCCCcccCCCCccCcc----cchhcccCCcccccc-chhcCChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEE
Confidence 99999999999999999977 999999999988545 8999999999999999999999888999999999999999
Q ss_pred CCCCceecCchhhhhhhh-hhHHHhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHHHHHHcCC-CCEEEccccHHHHhh
Q 013384 358 SLPNSINIPLSDLESRLP-EISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQALHKLGF-TSARDIIGGLESWAN 435 (444)
Q Consensus 358 hIpgAiniP~~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~G~~S~~aa~~L~~~G~-~~v~~l~GG~~aW~~ 435 (444)
|+|+|+|||+.++..... ++.+. ..+..++|+|+|+.||+||+|++.|++... .+|.++.||+.+|..
T Consensus 349 ~lP~avNIPL~~l~~~~~~~~~~~----------~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~vrDvigGl~~w~~ 418 (427)
T KOG2017|consen 349 RLPEAVNIPLKELRSRSGKKLQGD----------LNTESKDIFVICRRGNDSQRAVRILREKFPDSSVRDVIGGLKAWAA 418 (427)
T ss_pred ecccccccchhhhhhhhhhhhccc----------ccccCCCEEEEeCCCCchHHHHHHHHhhCCchhhhhhhhHHHHHHH
Confidence 999999999999876543 11111 113347899999999999999999997644 468899999999999
Q ss_pred CcCCCCCCC
Q 013384 436 DVDPSFPVY 444 (444)
Q Consensus 436 ~~~p~~P~Y 444 (444)
+++|+||.|
T Consensus 419 ~vd~~fP~Y 427 (427)
T KOG2017|consen 419 KVDPNFPLY 427 (427)
T ss_pred hcCcCCCCC
Confidence 999999998
No 2
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=1.8e-74 Score=586.03 Aligned_cols=355 Identities=43% Similarity=0.787 Sum_probs=318.8
Q ss_pred CCCHHHHhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc---------
Q 013384 65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--------- 135 (444)
Q Consensus 65 ~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R--------- 135 (444)
.|+.+|.+||+||+++|+||.++|++|++++|+||||||+||+++++|+++|||+|+|||+|.|+.|||||
T Consensus 10 ~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dv 89 (390)
T PRK07411 10 QLSKDEYERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWV 89 (390)
T ss_pred cCCHHHHHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEE
Q 013384 136 --------------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT 201 (444)
Q Consensus 136 --------------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~ 201 (444)
+||.++|+.+...++.++..+++.++|+||||+|++++|++||++|++.++|+|++++.|+.||+.
T Consensus 90 G~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~~~ 169 (390)
T PRK07411 90 GKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQAT 169 (390)
T ss_pred CCcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEEEE
Confidence 899999999999999888899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCceeecCCCCCCCccCCcccCCCcccchhHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEEeecc
Q 013384 202 VYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGR 281 (444)
Q Consensus 202 ~~~~~~~~C~~C~~~~~~~~~~~~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~~~~~~~~~~~d~~~~~~~~~~~~~r 281 (444)
++.++.+|||+|+||.+++....++|...|++||+++++|++||.|+||+|+|.++++.++++.||+.+.+|+.+++. |
T Consensus 170 v~~~~~~~c~~c~~~~~~~~~~~~~c~~~gvlg~~~~~~g~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~-~ 248 (390)
T PRK07411 170 VFNYEGGPNYRDLYPEPPPPGMVPSCAEGGVLGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNALDMKFRELKLR-P 248 (390)
T ss_pred EECCCCCCChHHhcCCCCCcccCCCCccCCcCcchHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEecc-C
Confidence 998878999999999877666678899999999999999999999999999999999999999999999999999998 8
Q ss_pred CCCCCccCCCCcccccccccccccccccCCCCCcccccccCCCCCccCHHHHHHHHhcCC-CcEEEEecCcccccccCCC
Q 013384 282 SSQCEACGENSTFTQDHFRNFDYEKFTQSPLSTLPLKLNLLSADSRISSKEYKEKVVNGE-AHILVDVRPAHHFRIVSLP 360 (444)
Q Consensus 282 ~~~C~~Cg~~~~~~~~~i~~~dy~~fcg~~~~~~~~~~~~l~~~~~Is~~el~~~l~~~~-~~~lIDVR~~~ef~~ghIp 360 (444)
+|+|++|.. . .+|+.|||....+.. ........++|+++|+.++++++. +++|||||++.||+.+|||
T Consensus 249 ~~~c~~i~~------~----~~~~~~~G~~~~~~~-~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIp 317 (390)
T PRK07411 249 NPERPVIEK------L----IDYEQFCGIPQAKAA-EAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIP 317 (390)
T ss_pred CCCCCcccc------c----cchhhhccccccccc-ccccccccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCC
Confidence 899998621 1 589999997643211 111234567899999999987653 5799999999999999999
Q ss_pred CceecCchhhhhh--hhhhHHHhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCCEEEccccHHHHhhCcC
Q 013384 361 NSINIPLSDLESR--LPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWANDVD 438 (444)
Q Consensus 361 gAiniP~~~l~~~--~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~~ 438 (444)
||+|||+.++... .+.+.+. .++++|||||++|.||..+++.|++.||++ +.+.||+.+|.++.+
T Consensus 318 GAiniP~~~l~~~~~~~~l~~l------------~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~ 384 (390)
T PRK07411 318 GSVLVPLPDIENGPGVEKVKEL------------LNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSREVD 384 (390)
T ss_pred CCEEccHHHhhcccchHHHhhc------------CCCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHhcC
Confidence 9999999887542 1122211 235899999999999999999999999974 689999999999999
Q ss_pred CCCCCC
Q 013384 439 PSFPVY 444 (444)
Q Consensus 439 p~~P~Y 444 (444)
|+||.|
T Consensus 385 p~~p~y 390 (390)
T PRK07411 385 PSVPQY 390 (390)
T ss_pred CCCCCC
Confidence 999998
No 3
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=7.3e-72 Score=568.19 Aligned_cols=353 Identities=42% Similarity=0.725 Sum_probs=317.5
Q ss_pred CCCCHHHHhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc--------
Q 013384 64 YGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-------- 135 (444)
Q Consensus 64 ~~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-------- 135 (444)
..|+.+|++||+||+.+++||.++|++|++++|+|||+||+|++++++|+++|||+|+|||+|.|+.+||+|
T Consensus 13 ~~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~d 92 (392)
T PRK07878 13 AELTRDEVARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSD 92 (392)
T ss_pred cCCCHHHHHHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhc
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceE
Q 013384 136 ---------------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQL 200 (444)
Q Consensus 136 ---------------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l 200 (444)
+||+++++.+...++.++..++++++|+||||+|++.+|+++|++|++.++|||++++.|+.||+
T Consensus 93 iG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~v 172 (392)
T PRK07878 93 VGRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQA 172 (392)
T ss_pred CCChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEE
Confidence 79999999999999988888999999999999999999999999999999999999999999999
Q ss_pred EEEeC----CCCCceeecCCCCCCCccCCcccCCCcccchhHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEE
Q 013384 201 TVYNY----NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIV 276 (444)
Q Consensus 201 ~~~~~----~~~~C~~C~~~~~~~~~~~~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~~~~~~~~~~~d~~~~~~~~~ 276 (444)
.++.+ +.++||+|+|+..+.....++|...|++||+++++|+++|+|+||+|+|.++++.++++.||+.+.+|+.+
T Consensus 173 ~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~gv~g~~~~~~g~~~a~e~ik~l~g~~~~~~~~l~~~d~~~~~~~~~ 252 (392)
T PRK07878 173 SVFWEDAPDGLGLNYRDLYPEPPPPGMVPSCAEGGVLGVLCASIGSIMGTEAIKLITGIGEPLLGRLMVYDALEMTYRTI 252 (392)
T ss_pred EEEecCCCCCCCCeeeeecCCCCCccCCCCCccCCccchHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCceeeE
Confidence 98873 36899999999877666678999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCCccCCCCcccccccccccccccccCCCCCcccccccCCCCCccCHHHHHHHHhcCCCcEEEEecCcccccc
Q 013384 277 KIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSPLSTLPLKLNLLSADSRISSKEYKEKVVNGEAHILVDVRPAHHFRI 356 (444)
Q Consensus 277 ~~~~r~~~C~~Cg~~~~~~~~~i~~~dy~~fcg~~~~~~~~~~~~l~~~~~Is~~el~~~l~~~~~~~lIDVR~~~ef~~ 356 (444)
++. ++|+|+ .++.. ++|+.||+.... .+ +.....+.|+++|++++++++.++++||||++.||+.
T Consensus 253 ~~~-~~~~C~------~~~~~----~~~~~~c~~~~~-~~---~~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ 317 (392)
T PRK07878 253 KIR-KDPSTP------KITEL----IDYEAFCGVVSD-EA---QQAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDI 317 (392)
T ss_pred eec-cCCCCC------ccccc----ccchhhcccccc-cc---cccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhc
Confidence 998 889995 23322 589999986432 11 2245668899999999998766688999999999999
Q ss_pred cCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCCEEEccccHHHHhhC
Q 013384 357 VSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWAND 436 (444)
Q Consensus 357 ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~ 436 (444)
+|||||+|+|+..+... ..+.+ .+++++|||||++|.+|..|++.|++.||++|+++.||+.+|...
T Consensus 318 ghIpGAinip~~~l~~~-~~~~~------------l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~ 384 (392)
T PRK07878 318 VHIPGAQLIPKSEILSG-EALAK------------LPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQ 384 (392)
T ss_pred CCCCCCEEcChHHhcch-hHHhh------------CCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHh
Confidence 99999999999876531 11111 123589999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 013384 437 VDPSFPVY 444 (444)
Q Consensus 437 ~~p~~P~Y 444 (444)
++|.||+|
T Consensus 385 ~~~~~p~~ 392 (392)
T PRK07878 385 VDPSLPMY 392 (392)
T ss_pred cCCCCCCC
Confidence 99999998
No 4
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=1.6e-67 Score=529.30 Aligned_cols=328 Identities=34% Similarity=0.596 Sum_probs=293.5
Q ss_pred HHHHhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc------------
Q 013384 68 PDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR------------ 135 (444)
Q Consensus 68 ~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R------------ 135 (444)
+.|.+||+||+++++||.++|++|++++|+||||||+||+++++|+++|||+|+|||+|.|+.|||+|
T Consensus 3 ~~~~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~ 82 (355)
T PRK05597 3 NLDIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQP 82 (355)
T ss_pred hHHHhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCCh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEEEEe
Q 013384 136 -----------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYN 204 (444)
Q Consensus 136 -----------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~~ 204 (444)
+||.++++++...++.++..++++++|+||||+|++.+|+++|++|+++++|+|++++.|+.|++.++.
T Consensus 83 Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~v~~~~ 162 (355)
T PRK05597 83 KAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQLSVFH 162 (355)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEEEEEEc
Confidence 899999999999999888899999999999999999999999999999999999999999999999998
Q ss_pred CCCCCceeecCCCCCCCccCCcccCCCcccchhHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEEeeccCCC
Q 013384 205 YNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQ 284 (444)
Q Consensus 205 ~~~~~C~~C~~~~~~~~~~~~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~~~~~~~~~~~d~~~~~~~~~~~~~r~~~ 284 (444)
|+.+|||+|+|+..++....+.|...|++||+++++|++||.|++|+|+|.++++.++++.||+.+.+|+.+++. ++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~c~~~gv~g~~~~~~g~~~a~e~ik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~-~~~~ 241 (355)
T PRK05597 163 AGHGPIYEDLFPTPPPPGSVPSCSQAGVLGPVVGVVGSAMAMEALKLITGVGTPLIGKLGYYDSLDGTWEYIPVV-GNPA 241 (355)
T ss_pred CCCCCCHHHhCCCCCCccCCCCccccCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCeEEEEecc-CCCC
Confidence 888999999999877666778999999999999999999999999999999999999999999999999999998 8888
Q ss_pred CCccCCCCcccccccccccccc-cccCCCCCcccccccCCCCCccCHHHHHHHHhcCCCcEEEEecCcccccccCCCCce
Q 013384 285 CEACGENSTFTQDHFRNFDYEK-FTQSPLSTLPLKLNLLSADSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSI 363 (444)
Q Consensus 285 C~~Cg~~~~~~~~~i~~~dy~~-fcg~~~~~~~~~~~~l~~~~~Is~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAi 363 (444)
|..+ ++|.. ||+.. +...+.++++++.++. .+.+|||||+++||+.+|||||+
T Consensus 242 ~~~~-------------~~~~~~~~~~~----------~~~~~~i~~~~~~~~~---~~~~IIDVR~~~ef~~ghIpgAi 295 (355)
T PRK05597 242 VLER-------------VRGSTPVHGIS----------GGFGEVLDVPRVSALP---DGVTLIDVREPSEFAAYSIPGAH 295 (355)
T ss_pred Cccc-------------ccccccccccc----------CCcccccCHHHHHhcc---CCCEEEECCCHHHHccCcCCCCE
Confidence 7432 12222 44321 2445689999998553 24789999999999999999999
Q ss_pred ecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCCEEEccccHHHHhh
Q 013384 364 NIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWAN 435 (444)
Q Consensus 364 niP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~ 435 (444)
|+|+.++....... ..+++++||+||++|.+|..|++.|++.||++|+++.||+.+|.+
T Consensus 296 nip~~~l~~~~~~~-------------~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 296 NVPLSAIREGANPP-------------SVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred EeCHHHhhhccccc-------------cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 99998765432111 012357999999999999999999999999999999999999975
No 5
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=7.7e-67 Score=525.44 Aligned_cols=327 Identities=33% Similarity=0.603 Sum_probs=293.6
Q ss_pred CCCHHHHhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc---------
Q 013384 65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--------- 135 (444)
Q Consensus 65 ~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R--------- 135 (444)
+|+.+|.+||+||+++++||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|++|||+|
T Consensus 13 ~~~~~e~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~di 92 (370)
T PRK05600 13 QLPTSELRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDV 92 (370)
T ss_pred CCCHHHHHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEE
Q 013384 136 --------------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT 201 (444)
Q Consensus 136 --------------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~ 201 (444)
+||+++++.+...++.++..++++++|+||||+|++++|++||++|+++++|+|++++.|+.||+.
T Consensus 93 G~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~v~ 172 (370)
T PRK05600 93 GRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGELA 172 (370)
T ss_pred CCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEEEE
Confidence 799999999999999888899999999999999999999999999999999999999999999999
Q ss_pred EEeCC---CCCceeecCCCCCCCccCCcccCCCcccchhHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEEe
Q 013384 202 VYNYN---GGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKI 278 (444)
Q Consensus 202 ~~~~~---~~~C~~C~~~~~~~~~~~~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~~~~~~~~~~~d~~~~~~~~~~~ 278 (444)
++.++ .++||+|+|+..++....++|...|++||+++++|+++|.|++|+|+|.++++.++++.||+.+.+++.+++
T Consensus 173 v~~~~~~~~~~~~~~l~~~~~~~~~~~~c~~~gvlg~~~~~ig~~~a~eaik~l~g~g~~l~g~ll~~d~~~~~~~~~~~ 252 (370)
T PRK05600 173 VFNSGPDHRGVGLRDLFPEQPSGDSIPDCATAGVLGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALTATTRSFRV 252 (370)
T ss_pred EEecCCCCCCCCcHhhCCCCCccccCCCCccCCcchhHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCEEEEEEe
Confidence 99864 379999999987766667899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCccCCCCcccccccccccccccccCCCCCcccccccCCCCCccCHHHHHHHHhcCCCcEEEEecCcccccccC
Q 013384 279 RGRSSQCEACGENSTFTQDHFRNFDYEKFTQSPLSTLPLKLNLLSADSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVS 358 (444)
Q Consensus 279 ~~r~~~C~~Cg~~~~~~~~~i~~~dy~~fcg~~~~~~~~~~~~l~~~~~Is~~el~~~l~~~~~~~lIDVR~~~ef~~gh 358 (444)
. ++|+|++|.+.. .+|+.| +++++|+.+++.++ +.+|||||++.||+.+|
T Consensus 253 ~-~~~~c~~~~~~~---------~~~~~~-------------------~~~~~el~~~l~~~-~~~lIDVR~~~E~~~gh 302 (370)
T PRK05600 253 G-ADPARPLVTRLR---------PSYEAA-------------------RTDTTSLIDATLNG-SATLLDVREPHEVLLKD 302 (370)
T ss_pred c-CCCCCCcccccc---------Ccchhc-------------------ccCHHHHHHHHhcC-CeEEEECCCHHHhhhcc
Confidence 8 889999875321 355422 78999999998774 47899999999999999
Q ss_pred CC---CceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCC-EEEccccHH
Q 013384 359 LP---NSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQALHKLGFTS-ARDIIGGLE 431 (444)
Q Consensus 359 Ip---gAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~G~~S~~aa~~L~~~G~~~-v~~l~GG~~ 431 (444)
|| ||+|||+.++.+..+.+.. +... + +.+|||||++|.||..|++.|++.||++ |+++.||+.
T Consensus 303 I~~~~gAinIPl~~l~~~~~~~~~-l~~~--------~-~~~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 303 LPEGGASLKLPLSAITDDADILHA-LSPI--------D-GDNVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred CCCCCccEeCcHHHhhcchhhhhh-cccc--------C-CCcEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 98 5999999988653211111 1111 1 2489999999999999999999999986 999999985
No 6
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=8.5e-55 Score=433.69 Aligned_cols=283 Identities=26% Similarity=0.443 Sum_probs=252.5
Q ss_pred HhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc---------------
Q 013384 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--------------- 135 (444)
Q Consensus 71 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R--------------- 135 (444)
.+||+||++++.||.++|++|++++|+|||+||+||++|++|+++|||+|+|||.|.|+.+||+|
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~K 81 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPK 81 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcH
Confidence 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEEEEeC
Q 013384 136 ----------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY 205 (444)
Q Consensus 136 ----------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~~~ 205 (444)
+||.++++.+...++.++..++++++|+||+|+|++++|+++|++|++.++|||++++.++.|++.++.|
T Consensus 82 a~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~~G~~~~~~p 161 (339)
T PRK07688 82 AVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGSYGLSYTIIP 161 (339)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeeeeeEEEEECC
Confidence 6999999999999988888899999999999999999999999999999999999999999999988888
Q ss_pred CCCCceeecCCCCCCCccCCcccCCCcccchhHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEEee-ccCCC
Q 013384 206 NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIR-GRSSQ 284 (444)
Q Consensus 206 ~~~~C~~C~~~~~~~~~~~~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~~~~~~~~~~~d~~~~~~~~~~~~-~r~~~ 284 (444)
+.+|||+|+|+..|... ..|...|+++|+++++|+++|.|++|+|+|.++.+.++++.||..+.+++.+++. .|+|+
T Consensus 162 ~~~pC~~Cl~~~~~~~~--~~c~~~gv~~p~~~~i~~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~~~ 239 (339)
T PRK07688 162 GKTPCLRCLLQSIPLGG--ATCDTAGIISPAVQIVASYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCMNVQKLKKDN 239 (339)
T ss_pred CCCCCeEeecCCCCCCC--CCCccCCcccHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEEecCCCCCC
Confidence 88999999999876544 5799999999999999999999999999999888999999999999999999875 36799
Q ss_pred CCccCCCCcccccccc-cccccccccCCCCCccccccc-CCCCCccCHHHHHHHHh-c----CCCcEEEEecCccccccc
Q 013384 285 CEACGENSTFTQDHFR-NFDYEKFTQSPLSTLPLKLNL-LSADSRISSKEYKEKVV-N----GEAHILVDVRPAHHFRIV 357 (444)
Q Consensus 285 C~~Cg~~~~~~~~~i~-~~dy~~fcg~~~~~~~~~~~~-l~~~~~Is~~el~~~l~-~----~~~~~lIDVR~~~ef~~g 357 (444)
||+||..+.++..+.+ ..+++.|||.... ++ .....+|+++++.++++ . +.+..+||||++. |+..
T Consensus 240 Cp~Cg~~~~~~~~~~~~~~~~~~lcg~~~~------~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~ 312 (339)
T PRK07688 240 CPSCGEKALYPYLNYENTTKTAVLCGRNTV------QIRPPHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLV 312 (339)
T ss_pred CCCCCCCCCccccchhhccchhhhcCcccc------ccccCCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEE
Confidence 9999986544332212 2467799997532 23 24568899999999884 2 3568999999988 9999
Q ss_pred CCCCc
Q 013384 358 SLPNS 362 (444)
Q Consensus 358 hIpgA 362 (444)
++|+-
T Consensus 313 ~~~~g 317 (339)
T PRK07688 313 LFKDG 317 (339)
T ss_pred EEcCC
Confidence 99864
No 7
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=9.5e-51 Score=404.45 Aligned_cols=260 Identities=28% Similarity=0.474 Sum_probs=234.3
Q ss_pred HhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc---------------
Q 013384 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--------------- 135 (444)
Q Consensus 71 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R--------------- 135 (444)
.+||+||++++.||.++|++|++++|+|||+||+|+++|++|+++|||+|+|||.|.|+.|||+|
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~K 81 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPK 81 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccH
Confidence 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEEEEeC
Q 013384 136 ----------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY 205 (444)
Q Consensus 136 ----------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~~~ 205 (444)
+||+++++.+...++.++..++++++|+||+|+|++++|++||++|++.++|||++++.|+.|++.++.|
T Consensus 82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~~~P 161 (338)
T PRK12475 82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTIIP 161 (338)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEEECC
Confidence 6999999999988888888899999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeecCCCCCCCccCCcccCCCcccchhHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEEeec-cCCC
Q 013384 206 NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRG-RSSQ 284 (444)
Q Consensus 206 ~~~~C~~C~~~~~~~~~~~~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~~~~~~~~~~~d~~~~~~~~~~~~~-r~~~ 284 (444)
+.+|||+|+|+..|... ..|...|+++|+++++|+++|.|++|+|+|..+++.++++.||..+.+++.+++.. |+|+
T Consensus 162 ~~tpC~~Cl~~~~p~~~--~~c~~~Gvl~p~v~~iaslqa~EalK~L~g~~~~l~~~Ll~~D~~~~~~~~~~~~~~k~p~ 239 (338)
T PRK12475 162 GKTPCLRCLMEHVPVGG--ATCDTAGIIQPAVQIVVAYQVTEALKILVEDFEALRETFLSFDIWNNQNMSIKVNKQKKDT 239 (338)
T ss_pred CCCCCHHHhcCCCCCCC--CCCccCCcCchHHHHHHHHHHHHHHHHHhCCCCCCcCeEEEEECCCCeEEEEEeccCCCCC
Confidence 99999999999865433 46999999999999999999999999999998889999999999999999999962 5999
Q ss_pred CCccCCCCcccccccc-cccccccccCCCCCcccccccCCC-CCccCHHHHHHHHh
Q 013384 285 CEACGENSTFTQDHFR-NFDYEKFTQSPLSTLPLKLNLLSA-DSRISSKEYKEKVV 338 (444)
Q Consensus 285 C~~Cg~~~~~~~~~i~-~~dy~~fcg~~~~~~~~~~~~l~~-~~~Is~~el~~~l~ 338 (444)
||+||+++..+....+ ..+|+.+||..+. ++.++ ..+++++++.+.++
T Consensus 240 Cp~Cg~~~~~~~l~~~~~~~~~~LCgr~~v------q~~~~~~~~~~~~~~~~~~~ 289 (338)
T PRK12475 240 CPSCGLTRTYPSLTFENQTKTEVLCGRNTV------QIRPGVRRRLNLEEIKKRLQ 289 (338)
T ss_pred CCcCCCCCcccccccccCCCeeeccCCcee------eeecCccCccCHHHHHHHHh
Confidence 9999987654433322 2679999997642 44433 47899999998886
No 8
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=7.1e-49 Score=375.27 Aligned_cols=218 Identities=42% Similarity=0.773 Sum_probs=206.7
Q ss_pred CCCHHHHhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc---------
Q 013384 65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--------- 135 (444)
Q Consensus 65 ~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R--------- 135 (444)
+|+.+|.+||+||++++.||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.|||+|
T Consensus 4 ~l~~~~~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv 83 (245)
T PRK05690 4 ELSDEEMLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATI 83 (245)
T ss_pred CCCHHHHHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEE
Q 013384 136 --------------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT 201 (444)
Q Consensus 136 --------------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~ 201 (444)
+||+++++.+...++.++..++++++|+||+|+|++++|+++|++|+++++|+|++++.|+.|++.
T Consensus 84 G~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~ 163 (245)
T PRK05690 84 GQPKVESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQVT 163 (245)
T ss_pred CChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCceEE
Confidence 799999999999999888888999999999999999999999999999999999999999999999
Q ss_pred EEeCCC-CCceeecCCCCCCCccCCcccCCCcccchhHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEEeec
Q 013384 202 VYNYNG-GPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRG 280 (444)
Q Consensus 202 ~~~~~~-~~C~~C~~~~~~~~~~~~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~~~~~~~~~~~d~~~~~~~~~~~~~ 280 (444)
++.|+. ++||+|+|+..+... .+|...|+++|+++++|+++|+|++|+|+|.++++.++++.||..+.+++.+++.
T Consensus 164 ~~~~~~~~~c~~c~~~~~~~~~--~~~~~~gv~~~~~~~~~~~~a~e~ik~l~g~~~~l~g~l~~~d~~~~~~~~~~~~- 240 (245)
T PRK05690 164 VFTYQDDEPCYRCLSRLFGENA--LTCVEAGVMAPLVGVIGSLQAMEAIKLLTGYGEPLSGRLLLYDAMTMQFREMKLK- 240 (245)
T ss_pred EEecCCCCceeeeccCCCCCCC--CCcccCCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEEcC-
Confidence 998764 799999998765432 3799999999999999999999999999999999999999999999999999997
Q ss_pred cCCCC
Q 013384 281 RSSQC 285 (444)
Q Consensus 281 r~~~C 285 (444)
|+|+|
T Consensus 241 ~~~~C 245 (245)
T PRK05690 241 RDPGC 245 (245)
T ss_pred CCcCC
Confidence 89998
No 9
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=3e-48 Score=393.84 Aligned_cols=244 Identities=49% Similarity=0.909 Sum_probs=226.6
Q ss_pred CCCCCHHHHhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-------
Q 013384 63 DYGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR------- 135 (444)
Q Consensus 63 ~~~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R------- 135 (444)
...++.++.+||+||+.++.||.++|.+|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|
T Consensus 105 ~~~~s~~~~~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~ 184 (376)
T PRK08762 105 PRLLTDEQDERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTED 184 (376)
T ss_pred ccCCCHHHHHHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchh
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcce
Q 013384 136 ----------------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQ 199 (444)
Q Consensus 136 ----------------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~ 199 (444)
+||.++++.+...++.++..++++++|+||+|+|++++|.++|++|+++++|+|++++.|+.|+
T Consensus 185 diG~~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~ 264 (376)
T PRK08762 185 RVGQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQ 264 (376)
T ss_pred hCCCcHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 7999999999998888888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC----CCceeecCCCCCCCccCCcccCCCcccchhHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEE
Q 013384 200 LTVYNYNG----GPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRI 275 (444)
Q Consensus 200 l~~~~~~~----~~C~~C~~~~~~~~~~~~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~~~~~~~~~~~d~~~~~~~~ 275 (444)
+.++.|+. ++||+|+|+..+.....++|...|++||+++++|+|+|+|++|+|+|.++++.++++.||..+.+|+.
T Consensus 265 v~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~~~~gv~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~~~~~~ 344 (376)
T PRK08762 265 VSVFDAGRQRGQAPCYRCLFPEPPPPELAPSCAEAGVLGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALAMRFRE 344 (376)
T ss_pred EEEEeCCCCCCCCCCHhhcCCCCCCcccCCCCccCCcchhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEE
Confidence 99998765 89999999987666666789999999999999999999999999999998899999999999999999
Q ss_pred EEeeccCCCCCccCCCCcccccccccccccccccCC
Q 013384 276 VKIRGRSSQCEACGENSTFTQDHFRNFDYEKFTQSP 311 (444)
Q Consensus 276 ~~~~~r~~~C~~Cg~~~~~~~~~i~~~dy~~fcg~~ 311 (444)
+++. |+|+|++||.++.++. .+||.+||+..
T Consensus 345 ~~~~-~~~~C~~C~~~~~~~~----~~~~~~~~~~~ 375 (376)
T PRK08762 345 LRLP-PDPHCPVCAPGRPFPG----YIDYAAFCAGA 375 (376)
T ss_pred Eecc-CCCCCCCCCCCCCcCc----ccchhhhhCCC
Confidence 9998 9999999998654432 27899999653
No 10
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=2.2e-48 Score=370.33 Aligned_cols=215 Identities=41% Similarity=0.778 Sum_probs=201.6
Q ss_pred HhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc---------------
Q 013384 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--------------- 135 (444)
Q Consensus 71 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R--------------- 135 (444)
++||+||++++.||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+|
T Consensus 2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~ 81 (240)
T TIGR02355 2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVE 81 (240)
T ss_pred ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHH
Confidence 58999999998888999999999999999999999999999999999999999999999999999
Q ss_pred --------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEEEEeC-C
Q 013384 136 --------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY-N 206 (444)
Q Consensus 136 --------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~~~-~ 206 (444)
+||+++++.++..++.++..++++++|+||+|+|++++|.+||++|++.++|+|++++.|+.|++.++.+ +
T Consensus 82 ~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~ 161 (240)
T TIGR02355 82 SAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVSVFTYQD 161 (240)
T ss_pred HHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEeEEEEEecCC
Confidence 7999999999999988888899999999999999999999999999999999999999999999988764 4
Q ss_pred CCCceeecCCCCCCCccCCcccCCCcccchhHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEEeeccCCCCC
Q 013384 207 GGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCE 286 (444)
Q Consensus 207 ~~~C~~C~~~~~~~~~~~~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~~~~~~~~~~~d~~~~~~~~~~~~~r~~~C~ 286 (444)
.+|||+|+++..+.. ...|...|+++|+++++|+++|+|++|+|+|.++++.++++.||+.+.+++.+++. |+|+||
T Consensus 162 ~~~c~~C~~~~~~~~--~~~~~~~gv~~p~~~~~~~~~a~e~ik~l~g~~~~l~g~ll~~d~~~~~~~~~~~~-~~~~C~ 238 (240)
T TIGR02355 162 GEPCYRCLSRLFGEN--ALSCVEAGVMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMTMSFREMKLP-KNPTCP 238 (240)
T ss_pred CCCccccccccCCCC--CCCccccCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEecc-CCccCC
Confidence 679999997655432 24688899999999999999999999999999999999999999999999999998 899999
Q ss_pred cc
Q 013384 287 AC 288 (444)
Q Consensus 287 ~C 288 (444)
+|
T Consensus 239 ~C 240 (240)
T TIGR02355 239 VC 240 (240)
T ss_pred CC
Confidence 99
No 11
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=5.6e-47 Score=364.33 Aligned_cols=206 Identities=27% Similarity=0.365 Sum_probs=195.5
Q ss_pred HhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc---------------
Q 013384 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--------------- 135 (444)
Q Consensus 71 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R--------------- 135 (444)
-+||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|+.|||||
T Consensus 7 ~~~ysRq~~~--iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve 84 (287)
T PRK08223 7 DEAFCRNLGW--ITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAE 84 (287)
T ss_pred HHHHhhhhhh--cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHH
Confidence 3899999999 99999999999999999999999999999999999999999999999999999
Q ss_pred --------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCCh--HhHHHHHHHHHHcCCcEEEEcccCCcceEEEEeC
Q 013384 136 --------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNA--PSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY 205 (444)
Q Consensus 136 --------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~--~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~~~ 205 (444)
+||+++|++++..++++|+.++++++|+||||+|++ ++|++||++|+++++|+|++++.|+.||+.++.|
T Consensus 85 ~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~gqv~v~~p 164 (287)
T PRK08223 85 VLAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMGTALLVFDP 164 (287)
T ss_pred HHHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeEEEEEEcC
Confidence 899999999999999999999999999999999996 8999999999999999999999999999999987
Q ss_pred CCCCceeecCCC---CCC--------CccCCcccCCCcc----------------cchhHHHHHHHHHHHHHHHhcCCCC
Q 013384 206 NGGPCYRCLFPT---PPP--------TTACQRCADSGVL----------------GVVPGIIGCLQALEAIKVASAVGEP 258 (444)
Q Consensus 206 ~~~~C~~C~~~~---~~~--------~~~~~~c~~~~~~----------------~~~~~i~g~l~a~e~lk~l~g~~~~ 258 (444)
+ +|||+|+|+. +|+ +..+++|.+.|++ |++++++|++||.|++|+|+|.+++
T Consensus 165 ~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl~~~~~~~~~~~~~p~~g~~~g~~g~~~a~E~ik~l~g~g~~ 243 (287)
T PRK08223 165 G-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYLADPSRVDLENRTGPSTGLACQLCAGVVATEVLKILLGRGRV 243 (287)
T ss_pred C-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCccccccccccccccCCCccchHHHHHHHHHHHHHHHHhCCCCc
Confidence 4 8999999998 444 2567899999999 9999999999999999999999888
Q ss_pred C-CCceeEeecCCCeEEEEEee
Q 013384 259 L-SGRMLLFDALSARIRIVKIR 279 (444)
Q Consensus 259 ~-~~~~~~~d~~~~~~~~~~~~ 279 (444)
+ .++++.||+.+++|+...++
T Consensus 244 ~~~~~~~~~d~~~~~~~~~~~~ 265 (287)
T PRK08223 244 YAAPWFHQFDAYRSRYVRTWRP 265 (287)
T ss_pred CCCCeEEEEEcCCceEEEEEec
Confidence 5 79999999999999999887
No 12
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=2e-45 Score=348.68 Aligned_cols=206 Identities=38% Similarity=0.634 Sum_probs=194.6
Q ss_pred CCHHHHhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc----------
Q 013384 66 LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR---------- 135 (444)
Q Consensus 66 l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R---------- 135 (444)
||.+|++||+||+++ ||.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.|||+|
T Consensus 2 l~~~~~~ry~Rq~~~--~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG 79 (231)
T PRK08328 2 LSERELERYDRQIMI--FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLG 79 (231)
T ss_pred CCHHHHHHHhhHHHh--cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcC
Confidence 788999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred --------------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEE
Q 013384 136 --------------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT 201 (444)
Q Consensus 136 --------------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~ 201 (444)
+||+++++.+...++.++..++++++|+||||+|++++|.+++++|+++++|+|++++.|+.|++.
T Consensus 80 ~~~k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v~ 159 (231)
T PRK08328 80 KNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVT 159 (231)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEEE
Confidence 699999999999888888888999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCceeecCCCCCCCccCCcccCCCcccchhHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEEe
Q 013384 202 VYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKI 278 (444)
Q Consensus 202 ~~~~~~~~C~~C~~~~~~~~~~~~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~~~~~~~~~~~d~~~~~~~~~~~ 278 (444)
++.|+.++||+|+|+..+. .+...|++||+++++|+++|+|++|+++|.++++.++++.||+.+.+|+.+++
T Consensus 160 ~~~p~~~~c~~~~~~~~~~-----~~~~~~~~~~~~~ii~~~~a~e~~k~l~g~~~~~~~~l~~~d~~~~~~~~~~~ 231 (231)
T PRK08328 160 TIVPGKTKRLREIFPKVKK-----KKGKFPILGATAGVIGSIQAMEVIKLITGYGEPLLNKLLIVDLANNVFEVVEL 231 (231)
T ss_pred EECCCCCCCHHHhCCCCCC-----ccccCCcCchHHHHHHHHHHHHHHHHHhCCCCcccCeEEEEECCCCEEEEeeC
Confidence 9999999999999987542 35567899999999999999999999999999999999999999999987763
No 13
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=7.8e-43 Score=330.97 Aligned_cols=205 Identities=59% Similarity=1.034 Sum_probs=193.6
Q ss_pred hhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-----------------
Q 013384 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR----------------- 135 (444)
Q Consensus 73 ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R----------------- 135 (444)
||+||++++.||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+++||+|
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAA 80 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEEEEeCCCCC
Q 013384 136 ------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGP 209 (444)
Q Consensus 136 ------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~~~~~~~ 209 (444)
+||+++++.++..++.++..++++++|+||+|+|++++|.+++++|+++++|||+++..|+.|++.++.|+.++
T Consensus 81 ~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v~~~~p~~~~ 160 (228)
T cd00757 81 AERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFIPGEGP 160 (228)
T ss_pred HHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEECCCCCC
Confidence 89999999999998878888899999999999999999999999999999999999999999999999898899
Q ss_pred ceeecCCCCCCCccCCcccCCCcccchhHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEEe
Q 013384 210 CYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKI 278 (444)
Q Consensus 210 C~~C~~~~~~~~~~~~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~~~~~~~~~~~d~~~~~~~~~~~ 278 (444)
||.|.+...+... ..+|...++++|+++++|+|+|.|++|+|+|..+++.++++.||..+.+|+.+++
T Consensus 161 c~~c~~~~~~~~~-~~~~~~~~~~~~~~~~~a~l~a~e~i~~l~g~~~~~~~~~~~~d~~~~~~~~~~~ 228 (228)
T cd00757 161 CYRCLFPEPPPPG-VPSCAEAGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDALSMSFRTLKL 228 (228)
T ss_pred CccccCCCCCCCC-CCccccCCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCEEEEEeC
Confidence 9999998765432 4578889999999999999999999999999988888999999999999998764
No 14
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-42 Score=334.59 Aligned_cols=225 Identities=53% Similarity=0.932 Sum_probs=212.3
Q ss_pred CCCHHHHhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc---------
Q 013384 65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--------- 135 (444)
Q Consensus 65 ~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R--------- 135 (444)
.|+..+++||+||+.++.+|.++|++|++++|+|+|+||+|++++++|+++|||+++|+|.|+|+.+||+|
T Consensus 2 ~~~~~~~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~di 81 (254)
T COG0476 2 MLSDEEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADV 81 (254)
T ss_pred CccHHHHHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeeccccc
Confidence 47889999999999998888888999999999999999999999999999999999999999999999999
Q ss_pred --------------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEE
Q 013384 136 --------------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT 201 (444)
Q Consensus 136 --------------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~ 201 (444)
+||.++++.+...++.+++.++++.+|+|+||+|++.+|+++|++|++.++|++++++.++.|++.
T Consensus 82 g~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~~~ 161 (254)
T COG0476 82 GKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVT 161 (254)
T ss_pred CCcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCC-CCCceeecCCCCCCCccCC-cccCCCcccchhHHHHHHHHHHHHHHHhcCC-CCCCCceeEeecCCC-eEEEEE
Q 013384 202 VYNYN-GGPCYRCLFPTPPPTTACQ-RCADSGVLGVVPGIIGCLQALEAIKVASAVG-EPLSGRMLLFDALSA-RIRIVK 277 (444)
Q Consensus 202 ~~~~~-~~~C~~C~~~~~~~~~~~~-~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~-~~~~~~~~~~d~~~~-~~~~~~ 277 (444)
++.|+ .++||+|+|+..++..... .|.+.+++++++++++++++.|++|+++|.+ .++.++++.||.... .|++.+
T Consensus 162 ~~~~~~~~~c~~~~~~~~~~~~~~~~~c~~~gv~~~~~~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (254)
T COG0476 162 VIIPGDKTPCYRCLFPEKPPPGLVPTSCDEAGVLGPLVGVVGSLQALEAIKLLTGIGLEPLIGRLLLYDALDMERFRTLK 241 (254)
T ss_pred EEecCCCCCcccccCCCCCCccccccccccCCccccccchhhhHHHHHHHHHhcCCCccccccceeeeechhcccchhhh
Confidence 99998 5999999999998766554 5999999999999999999999999999998 888899999999998 799999
Q ss_pred eeccCCCCCccC
Q 013384 278 IRGRSSQCEACG 289 (444)
Q Consensus 278 ~~~r~~~C~~Cg 289 (444)
.......||+||
T Consensus 242 ~~~~~~~~~~c~ 253 (254)
T COG0476 242 LRRRPISCPVCG 253 (254)
T ss_pred cccCCCCCCcCC
Confidence 884444499998
No 15
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=100.00 E-value=1.6e-42 Score=342.04 Aligned_cols=217 Identities=19% Similarity=0.230 Sum_probs=194.0
Q ss_pred CCCCHHHHhhhhccccCCC-CC-HHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc------
Q 013384 64 YGLSPDMIYRYSRHLLLPS-FG-VEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR------ 135 (444)
Q Consensus 64 ~~l~~~~~~ry~Rq~~l~~-~g-~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R------ 135 (444)
.+|+.++++||+||+.+++ || .++|++|++++|+ |||+|++++.+|++ |||+|+|||+|.|+.|||+-
T Consensus 45 ~~l~~~~~~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~~L~~~~d 120 (318)
T TIGR03603 45 ETLTKFNLITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEIDLYSKEF 120 (318)
T ss_pred hccCHHHHHHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHHHHhChhh
Confidence 4699999999999999987 57 5589999999999 99999999999999 99999999999999999993
Q ss_pred ---------------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHH--HHHHHHHcCCcEEEEcccCCcc
Q 013384 136 ---------------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYM--ISDCCVVLGKPLVSGAALGLEG 198 (444)
Q Consensus 136 ---------------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~--i~~~~~~~~~p~i~~~~~g~~G 198 (444)
+||.++++. ..++++++|+||||+|++.+|++ +|++|++.++|||++++.|+.|
T Consensus 121 iG~~K~~~a~~~L~~lnp~v~i~~---------~~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g~~G 191 (318)
T TIGR03603 121 ILKKDIRDLTSNLDALELTKNVDE---------LKDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDGPFV 191 (318)
T ss_pred cCcHHHHHHHHHHHHhCCCCEEee---------HHHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEccCEE
Confidence 899988865 35678999999999999999976 9999999999999999999999
Q ss_pred eEEEEeCCCCCceeecCCCC------------CC--CccCCcccCCCcccchhHHHHHHHHHHHHHHHhcCCCC-CCCce
Q 013384 199 QLTVYNYNGGPCYRCLFPTP------------PP--TTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEP-LSGRM 263 (444)
Q Consensus 199 ~l~~~~~~~~~C~~C~~~~~------------~~--~~~~~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~~~-~~~~~ 263 (444)
|+.++.|+.+|||+|+++.. ++ .....+|...|+++|+++++|+|+|.|++ +++|.+++ +.+++
T Consensus 192 qv~~~~P~~t~C~~Cl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~gp~~giigsl~a~Eai-~i~g~g~~~l~g~l 270 (318)
T TIGR03603 192 FITCTLPPETGCFECLERRLLSRLDWRLYGVFTEYLVKAENNVSTAELIFPLLNIKKNLVVSEIF-AIGSLGTSKFEGRL 270 (318)
T ss_pred EEEEEeCCCCCcHHHccchhhcccccccccccccccCCCCCCCccCCeehhHHHHHHHHHHHHHH-HHhCCCCcccCCeE
Confidence 99988888899999998821 01 12234799999999999999999999999 99998775 56999
Q ss_pred eEeecCCCeEEEEEeeccCCCCCccCCCCccc
Q 013384 264 LLFDALSARIRIVKIRGRSSQCEACGENSTFT 295 (444)
Q Consensus 264 ~~~d~~~~~~~~~~~~~r~~~C~~Cg~~~~~~ 295 (444)
+.||..+.+++.+++. |+|+||+||....+.
T Consensus 271 l~id~~t~~~~~~~l~-k~p~Cp~CG~~~~~~ 301 (318)
T TIGR03603 271 LSINLPTLEIQFQDIL-KQSCCSTCGTFNKIK 301 (318)
T ss_pred EEEECCCCeEEEEecC-CCCCCcccCCccccc
Confidence 9999999999999998 899999999876544
No 16
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=4e-41 Score=313.19 Aligned_cols=178 Identities=51% Similarity=0.917 Sum_probs=168.9
Q ss_pred hhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-----------------
Q 013384 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR----------------- 135 (444)
Q Consensus 73 ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R----------------- 135 (444)
||+||++++.||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVA 80 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEEEEeCC-CC
Q 013384 136 ------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYN-GG 208 (444)
Q Consensus 136 ------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~~~~-~~ 208 (444)
+||+++++.++..++.++..++++++|+||+|+|++++|.++|++|+++++|||++++.|+.|++.++.|+ .+
T Consensus 81 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~~~~~p~~~~ 160 (202)
T TIGR02356 81 AQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQLMVFDPGGEG 160 (202)
T ss_pred HHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEEEEEeCCCCC
Confidence 89999999999999888888899999999999999999999999999999999999999999999999987 79
Q ss_pred CceeecCCCCCCCccCCcccCCCcccchhHHHHHHHHHHHHHHH
Q 013384 209 PCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVA 252 (444)
Q Consensus 209 ~C~~C~~~~~~~~~~~~~c~~~~~~~~~~~i~g~l~a~e~lk~l 252 (444)
|||+|+|+..+ ...++|...|+++|+++++|+|+|+|++|++
T Consensus 161 ~c~~c~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~e~~k~l 202 (202)
T TIGR02356 161 PCLRCLFPDIA--DTGPSCATAGVIGPVVGVIGSLQALEALKLL 202 (202)
T ss_pred CChhhcCCCCc--ccCCCCccCCccchHHHHHHHHHHHHHHHhC
Confidence 99999998732 2356899999999999999999999999985
No 17
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=4.1e-36 Score=278.11 Aligned_cols=170 Identities=27% Similarity=0.442 Sum_probs=157.7
Q ss_pred HhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc---------------
Q 013384 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--------------- 135 (444)
Q Consensus 71 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R--------------- 135 (444)
++||+||+++ ||.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+||+|
T Consensus 1 ~~~Y~Rqi~l--~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~ 78 (197)
T cd01492 1 IALYDRQIRL--WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAE 78 (197)
T ss_pred CchhhHHHHH--hCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHH
Confidence 3699999999 99999999999999999999999999999999999999999999999999999
Q ss_pred --------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEEEEeCCC
Q 013384 136 --------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNG 207 (444)
Q Consensus 136 --------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~~~~~ 207 (444)
+||+++++.+...++ ++..++++++|+||+|+|+++.+..+|++|+++++|+|++++.|+.|++....
T Consensus 79 a~~~~L~~lNp~v~i~~~~~~~~-~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~d~--- 154 (197)
T cd01492 79 ASLERLRALNPRVKVSVDTDDIS-EKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVFADL--- 154 (197)
T ss_pred HHHHHHHHHCCCCEEEEEecCcc-ccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEEEec---
Confidence 899999999998887 45678899999999999999999999999999999999999999999875321
Q ss_pred CCceeecCCCCCCCccCCcccCCCcccchhHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCe
Q 013384 208 GPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSAR 272 (444)
Q Consensus 208 ~~C~~C~~~~~~~~~~~~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~~~~~~~~~~~d~~~~~ 272 (444)
++|+++++|+++|+|++|+++|.++++ +.++.||..+..
T Consensus 155 -------------------------~~p~~~~~~~~~~~e~~k~~~~~~~~l-~~~~~~d~~~~~ 193 (197)
T cd01492 155 -------------------------LAPVAAVVGGILAQDVINALSKRESPL-NNFFVFDGETSE 193 (197)
T ss_pred -------------------------cccHHHHHHHHHHHHHHHHHhCCCCcc-CcEEEEECCCCc
Confidence 889999999999999999999998887 459999988754
No 18
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=1.8e-35 Score=274.14 Aligned_cols=167 Identities=29% Similarity=0.451 Sum_probs=155.1
Q ss_pred hhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-----------------
Q 013384 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR----------------- 135 (444)
Q Consensus 73 ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R----------------- 135 (444)
+|+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|++|
T Consensus 1 ~y~Rqi~l--~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~ 78 (198)
T cd01485 1 LYDRQIRL--WGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAA 78 (198)
T ss_pred Cccceeec--cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHH
Confidence 69999999 99999999999999999999999999999999999999999999999999998
Q ss_pred --------ccCcceEEEEeecCC--cccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEEEEeC
Q 013384 136 --------INSTVHIIEHREALR--TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY 205 (444)
Q Consensus 136 --------lnp~~~v~~~~~~~~--~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~~~ 205 (444)
+||+++++.+...+. .++..++++++|+||+|+|+...+..+|++|+++++|+|++++.|+.|++.+..
T Consensus 79 ~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~~~- 157 (198)
T cd01485 79 ASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYAFFDF- 157 (198)
T ss_pred HHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEch-
Confidence 799999999988775 566788899999999999999999999999999999999999999999885321
Q ss_pred CCCCceeecCCCCCCCccCCcccCCCcccchhHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCe
Q 013384 206 NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSAR 272 (444)
Q Consensus 206 ~~~~C~~C~~~~~~~~~~~~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~~~~~~~~~~~d~~~~~ 272 (444)
|+++++|+++|.|++|+++|..+++ ++++.||+.+.+
T Consensus 158 -----------------------------p~~~~~~~~~~~e~~k~l~~~~~~~-~~~~~~d~~~~~ 194 (198)
T cd01485 158 -----------------------------PIAAFLGGVVAQEAIKSISGKFTPL-NNLYIYDGFEST 194 (198)
T ss_pred -----------------------------hHHHHHHHHHHHHHHHHHhCCCCcc-CcEEEEECcccc
Confidence 8999999999999999999998776 789999987653
No 19
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=1e-33 Score=274.33 Aligned_cols=192 Identities=27% Similarity=0.460 Sum_probs=166.3
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-----------------------ccCcceEEEEeecCCc
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-----------------------INSTVHIIEHREALRT 151 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-----------------------lnp~~~v~~~~~~~~~ 151 (444)
||+|||+||+||+++++|+++|||+|+|+|.|+|+.|||+| +||.++++++...+.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 69999999999999999999999999999999999999999 8999999999988875
Q ss_pred ccHHhhcCCCcEEEEccCChHhHHHHHHHHHHc--------CCcEEEEcccCCcceEEEEeCCCCCceeecCCCCCCCcc
Q 013384 152 SNALEILSQYEIVVDATDNAPSRYMISDCCVVL--------GKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTTA 223 (444)
Q Consensus 152 ~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~--------~~p~i~~~~~g~~G~l~~~~~~~~~C~~C~~~~~~~~~~ 223 (444)
. ..++++++|+||+|+|+.++|.+||+.|... ++|+|++++.|+.|++.++.|+.++||+|.+...|+..+
T Consensus 81 ~-~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~~~ 159 (291)
T cd01488 81 K-DEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQVT 159 (291)
T ss_pred h-hHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCCCC
Confidence 4 4688999999999999999999999998664 499999999999999999999999999999876544333
Q ss_pred CCccc-------------------------------------------------------------------CCCcccch
Q 013384 224 CQRCA-------------------------------------------------------------------DSGVLGVV 236 (444)
Q Consensus 224 ~~~c~-------------------------------------------------------------------~~~~~~~~ 236 (444)
.+.|. ..++++.+
T Consensus 160 ~p~Cti~~~P~~~~hci~~a~~~~~~~~~~~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~st 239 (291)
T cd01488 160 FPLCTIANTPRLPEHCIEYASLIQWPKEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVAST 239 (291)
T ss_pred CCcccccCCCCCcchheeeeeeeecccccCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCch
Confidence 33221 03357789
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCe-EEEEEeeccCCCCCccC
Q 013384 237 PGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSAR-IRIVKIRGRSSQCEACG 289 (444)
Q Consensus 237 ~~i~g~l~a~e~lk~l~g~~~~~~~~~~~~d~~~~~-~~~~~~~~r~~~C~~Cg 289 (444)
++++|++++.|++|++++..+.+ +.+++|++..+- ..++++. |+|+|++||
T Consensus 240 naiia~~~~~~~~k~~~~~~~~~-~n~~~~~g~~g~~~~~~~~~-~~~~c~~c~ 291 (291)
T cd01488 240 NAIIAAACCLEALKIATDCYENL-NNYLMYNGVDGCYTYTFEHE-RKEDCPVCS 291 (291)
T ss_pred HHHHHHHHHHHHHHHHhccccCC-CceEEEecCCceEEEEEEEe-eCCCCCCCC
Confidence 99999999999999999987765 457899998876 4556665 999999997
No 20
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=100.00 E-value=3.3e-32 Score=254.68 Aligned_cols=169 Identities=28% Similarity=0.348 Sum_probs=150.2
Q ss_pred CCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc----------------------ccCcc
Q 013384 83 FGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR----------------------INSTV 140 (444)
Q Consensus 83 ~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R----------------------lnp~~ 140 (444)
||.++|++|++++|+|||+||+|++++++|+++|||+|+|+|.|.|+.+||+| +||++
T Consensus 18 ~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v 97 (212)
T PRK08644 18 HTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFV 97 (212)
T ss_pred cCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999999999999 79999
Q ss_pred eEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHc-CCcEEEEcccCCcceEEEEeCCC--CCceeecCCC
Q 013384 141 HIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVL-GKPLVSGAALGLEGQLTVYNYNG--GPCYRCLFPT 217 (444)
Q Consensus 141 ~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~-~~p~i~~~~~g~~G~l~~~~~~~--~~C~~C~~~~ 217 (444)
+++.++..++.++..++++++|+||+|+|++++|..+++.|++. ++|+|+++..+..|+...+.+.. ..||.| +.
T Consensus 98 ~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 175 (212)
T PRK08644 98 EIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDSNSIKTRRIGKNFYIV--GD 175 (212)
T ss_pred EEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCceEEEecCCCCCeeEC--CC
Confidence 99999999998888889999999999999999999999999998 99999998888888877665532 334322 22
Q ss_pred CCCCccCCcccCCCcccchhHHHHHHHHHHHHHHHhcCCC
Q 013384 218 PPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGE 257 (444)
Q Consensus 218 ~~~~~~~~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~~ 257 (444)
.+ ...|...|+++|+++++|+|+|.|++|+|+|.+.
T Consensus 176 ~~----~~~~~~~gv~~~~~~~i~~~~a~ealk~l~~~~~ 211 (212)
T PRK08644 176 FV----TEAKPGNPLMAPRVNIAAAHQANLVLRLILGEEV 211 (212)
T ss_pred CC----cccCCCCCccchHHHHHHHHHHHHHHHHHhCCCC
Confidence 21 2357889999999999999999999999998653
No 21
>PRK14852 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-32 Score=295.88 Aligned_cols=205 Identities=24% Similarity=0.345 Sum_probs=180.8
Q ss_pred hhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc----------------
Q 013384 72 YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR---------------- 135 (444)
Q Consensus 72 ~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R---------------- 135 (444)
.||+||+.+ ||.++|++|++++|+|||+||+|++++++|+++|||+|+|+|+|.|+.|||||
T Consensus 313 ~ry~Rqi~l--ig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaev 390 (989)
T PRK14852 313 IAFSRNLGL--VDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDV 390 (989)
T ss_pred HHhhchHhh--cCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHH
Confidence 689999999 99999999999999999999999999999999999999999999999999999
Q ss_pred -------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCCh--HhHHHHHHHHHHcCCcEEEEcccCCcceEEEEeCC
Q 013384 136 -------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNA--PSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYN 206 (444)
Q Consensus 136 -------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~--~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~~~~ 206 (444)
+||.++|++++..++.+|..++++++|+||||+|++ ..+..+++.|+++++|+|++++.|+.|++.++.|+
T Consensus 391 aa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g~v~v~~p~ 470 (989)
T PRK14852 391 MTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYSCALLVFMPG 470 (989)
T ss_pred HHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccCeeEEEEcCC
Confidence 899999999999999999999999999999999986 45778888899999999999999999999999875
Q ss_pred CCCceeecCCCCCCCcc-------------------------C-CcccCCCcccchhHHHHHHHHHHHHHHHhcCCCCC-
Q 013384 207 GGPCYRCLFPTPPPTTA-------------------------C-QRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPL- 259 (444)
Q Consensus 207 ~~~C~~C~~~~~~~~~~-------------------------~-~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~~~~- 259 (444)
++|++|+|.-.+.... + -.-..++.++..+.+.++++|.+++|+++|.++..
T Consensus 471 -~~~~~~~f~~~~~~p~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~~~~~ 549 (989)
T PRK14852 471 -GMNFDSYFGIDDDTPPMEGYLRFGMGLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRRGIRP 549 (989)
T ss_pred -CCCHHHhCCCCCCCchHhhhhhhhccCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCCcccc
Confidence 5999999986543110 0 01124667778888999999999999999997663
Q ss_pred CCceeEeecCCCeEEEEEee
Q 013384 260 SGRMLLFDALSARIRIVKIR 279 (444)
Q Consensus 260 ~~~~~~~d~~~~~~~~~~~~ 279 (444)
....+.||.+++.+.+..++
T Consensus 550 ~p~~~qfd~~~~~~~~~~~~ 569 (989)
T PRK14852 550 VPYFRQFDPLTGRHVRGRLR 569 (989)
T ss_pred Ccchhccchhhcccceeeee
Confidence 37789999999887766664
No 22
>PRK14851 hypothetical protein; Provisional
Probab=99.98 E-value=5e-32 Score=290.04 Aligned_cols=211 Identities=21% Similarity=0.317 Sum_probs=185.1
Q ss_pred CCHHHHhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc----------
Q 013384 66 LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR---------- 135 (444)
Q Consensus 66 l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R---------- 135 (444)
....+.+||+||+.+ ||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|++|||||
T Consensus 18 ~~~~~~~ry~R~~~l--~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG 95 (679)
T PRK14851 18 AAEYREAAFSRNIGL--FTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFG 95 (679)
T ss_pred HHHHHHHHhhhhHHh--cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCC
Confidence 355667999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred -------------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCCh--HhHHHHHHHHHHcCCcEEEEcccCCcceE
Q 013384 136 -------------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNA--PSRYMISDCCVVLGKPLVSGAALGLEGQL 200 (444)
Q Consensus 136 -------------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~--~~r~~i~~~~~~~~~p~i~~~~~g~~G~l 200 (444)
+||+++|++++..++.+|..++++++|+||||+|++ .+|.+|++.|+++++|+|+++..|+.|++
T Consensus 96 ~~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~ 175 (679)
T PRK14851 96 RPKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAM 175 (679)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceE
Confidence 899999999999999999999999999999999974 67899999999999999999999999999
Q ss_pred EEEeCCCCCceeecCCCCCCCc-------------------------cC-CcccCCCcccchhHHHHHHHHHHHHHHHhc
Q 013384 201 TVYNYNGGPCYRCLFPTPPPTT-------------------------AC-QRCADSGVLGVVPGIIGCLQALEAIKVASA 254 (444)
Q Consensus 201 ~~~~~~~~~C~~C~~~~~~~~~-------------------------~~-~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g 254 (444)
.++.|+ ++|+.|+|...+... .+ -+-.....+...+...+++.+.|++|+|.+
T Consensus 176 ~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (679)
T PRK14851 176 LVFTPQ-GMGFDDYFNIGGKMPEEQKYLRFAMGLAPRPTHIKYMDLSKVDLKGGKGPSLNIACQLCSGMAGTEAVRIILG 254 (679)
T ss_pred EEEcCC-CCCHhHhccCCCCCChHHHHHHHHhcCCCcchhhccCcHhhcCCccCcCCCccHHHHhhhhhHHHHHHHHhhc
Confidence 999875 899999997644311 00 022335567777888999999999999998
Q ss_pred CCCCC-CCceeEeecCCCeEEEEEee
Q 013384 255 VGEPL-SGRMLLFDALSARIRIVKIR 279 (444)
Q Consensus 255 ~~~~~-~~~~~~~d~~~~~~~~~~~~ 279 (444)
..+.. ..+++.||.+.+++....+.
T Consensus 255 ~~~~~~~p~~~~~d~~~~~~~~~~~~ 280 (679)
T PRK14851 255 KGGLRPVPCYLQFDPFLQKLRKGRLS 280 (679)
T ss_pred CCeeeccchhhhcchhhcceeEEEee
Confidence 87653 37789999999988776665
No 23
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=99.98 E-value=8.2e-32 Score=260.77 Aligned_cols=187 Identities=27% Similarity=0.418 Sum_probs=159.4
Q ss_pred hhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-----------------
Q 013384 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR----------------- 135 (444)
Q Consensus 73 ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R----------------- 135 (444)
.||||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|
T Consensus 1 lYsRQl~~--~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~ 78 (286)
T cd01491 1 LYSRQLYV--LGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEAS 78 (286)
T ss_pred Ccccceec--cCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHH
Confidence 49999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEEEEeCCCCC
Q 013384 136 ------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGP 209 (444)
Q Consensus 136 ------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~~~~~~~ 209 (444)
+||+++|+.+...++ .+++.++|+||+|.|+++.+..||++|+++++|+|.+++.|+.|++.+ . -++
T Consensus 79 ~~~L~eLNp~V~V~~~~~~~~----~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~-d--fg~ 151 (286)
T cd01491 79 QARLAELNPYVPVTVSTGPLT----TDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFC-D--FGD 151 (286)
T ss_pred HHHHHHHCCCCEEEEEeccCC----HHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEe-c--CCC
Confidence 899999999987644 367789999999999999999999999999999999999999999865 2 358
Q ss_pred ceeecCCCCCCCccCC----------------------------------------ccc---------------------
Q 013384 210 CYRCLFPTPPPTTACQ----------------------------------------RCA--------------------- 228 (444)
Q Consensus 210 C~~C~~~~~~~~~~~~----------------------------------------~c~--------------------- 228 (444)
||.|.-++...+.+.. .+.
T Consensus 152 ~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~v~~~~~~~f~i~d~~~~~ 231 (286)
T cd01491 152 EFTVYDPNGEEPKSGMISSISKDNPGVVTCLDETRHGFEDGDYVTFSEVEGMTELNGCEPRKIKVKGPYTFSIGDTSSFS 231 (286)
T ss_pred eEEEeCCCCCcCCccceeeeecCCceEEEEECCcccCCcCCCEEEEeccCcchhhCCCccEEEEECCCCeEEECcCcCcC
Confidence 8888744322111100 000
Q ss_pred ---CCCc-----ccchhHHHHHHHHHHHHHHHhcCCCCCCCceeEeecC
Q 013384 229 ---DSGV-----LGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDAL 269 (444)
Q Consensus 229 ---~~~~-----~~~~~~i~g~l~a~e~lk~l~g~~~~~~~~~~~~d~~ 269 (444)
.+|. ++|+.+++|+++|+|++|.+++...|+. +++.||..
T Consensus 232 ~y~~gG~~~qvK~~~~~~~~g~~~~q~~~~~~~~~~~p~~-q~~~~~~~ 279 (286)
T cd01491 232 EYIRGGIVTQVKLSPMAAFFGGLAAQEVLKACSGKFTPLK-QWLYFDAL 279 (286)
T ss_pred ccccCcEEEEEecccHHHHhhhHHHHHHHHHcCCCCCcee-eEEEecHH
Confidence 0121 7899999999999999999999999875 68888864
No 24
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.98 E-value=7.6e-32 Score=280.65 Aligned_cols=212 Identities=22% Similarity=0.335 Sum_probs=168.5
Q ss_pred hhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-----------------
Q 013384 73 RYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR----------------- 135 (444)
Q Consensus 73 ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R----------------- 135 (444)
++-|-..+|++|. ++|++++|+||||||+||++|++|+++|||+|+|||+|.|+.|||+|
T Consensus 321 kLmkWRllP~l~~---ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA 397 (664)
T TIGR01381 321 KLMKWRLHPDLQL---ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKA 397 (664)
T ss_pred HHHhhhcCChhhH---HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHH
Confidence 4555566777765 89999999999999999999999999999999999999999999999
Q ss_pred ---------ccCcceEEEEeecC-------Cc----------ccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEE
Q 013384 136 ---------INSTVHIIEHREAL-------RT----------SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLV 189 (444)
Q Consensus 136 ---------lnp~~~v~~~~~~~-------~~----------~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i 189 (444)
+||.++++.+...+ ++ ++..++++++|+||+|+|++++|++++.+|..+++|+|
T Consensus 398 ~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI 477 (664)
T TIGR01381 398 ETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAI 477 (664)
T ss_pred HHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEE
Confidence 89999999998774 33 35678899999999999999999999999999999999
Q ss_pred EEcccCCcceEEEEeC------------------CCCCceeec---CCCCCCCc--cCCcccCCCcccchhHHHHHHHHH
Q 013384 190 SGAALGLEGQLTVYNY------------------NGGPCYRCL---FPTPPPTT--ACQRCADSGVLGVVPGIIGCLQAL 246 (444)
Q Consensus 190 ~~~~~g~~G~l~~~~~------------------~~~~C~~C~---~~~~~~~~--~~~~c~~~~~~~~~~~i~g~l~a~ 246 (444)
++ +.|+.|++.+.+. ...+||.|. +|...... --+.|. |++|..+++|+++|.
T Consensus 478 ~a-AlGfdg~lvmrhG~~~~~~~~~~~~~~~~~~~~~gCYfC~Dv~aP~~s~~~rtlDqqCt---VtrPgv~~ias~~Av 553 (664)
T TIGR01381 478 SA-ALGFDSYVVMRHGIGRSESVSDVSSSDSVPYSRLGCYFCNDVTAPGDSTTDRTLDQQCT---VTRPGTAMIASGLAV 553 (664)
T ss_pred EE-EeccceEEEEEecccccccccccccccccCCCCCCccccCCCCCCCcccccccccccce---EecchHHHHHHHHHH
Confidence 98 5999999987631 258999999 55543321 114677 999999999999999
Q ss_pred HHHHHHhcCCCC-------------CCCceeEeecCCCeEEEEEee-ccCCCCCccCCC
Q 013384 247 EAIKVASAVGEP-------------LSGRMLLFDALSARIRIVKIR-GRSSQCEACGEN 291 (444)
Q Consensus 247 e~lk~l~g~~~~-------------~~~~~~~~d~~~~~~~~~~~~-~r~~~C~~Cg~~ 291 (444)
|+++.|+..+.. +.---+.+-+.-.+|....+. .+.+.|.+|++.
T Consensus 554 Ell~~llqhp~~~~ap~~~~~~~~~lG~~Phqirg~l~~f~~~~~~~~~~~~C~aCs~~ 612 (664)
T TIGR01381 554 ELLVSVLQHPLPSKTPASHDDNTTVLGALPHQIRGFLGRFQQILLSVKRFDQCVACSDA 612 (664)
T ss_pred HHHHHHhcCCcccCCCCcCCCCCCccccCCceeeeehhhCeeeeecccCCCcccCCCHH
Confidence 999999886421 100011222222334444443 478899999874
No 25
>PRK07877 hypothetical protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=279.62 Aligned_cols=189 Identities=19% Similarity=0.224 Sum_probs=162.5
Q ss_pred CCCCHHHH--hhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCC-CcEEEeeCCccccccccc-----
Q 013384 64 YGLSPDMI--YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHR----- 135 (444)
Q Consensus 64 ~~l~~~~~--~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gv-g~i~lvD~D~V~~sNl~R----- 135 (444)
+-|+++++ +||+||+.+ ||.++|++|++++|+|||+| +||++|.+|+++|| |+|+|+|+|.||.|||||
T Consensus 78 ~~~~~~~~~~~r~~Rn~~~--ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~ 154 (722)
T PRK07877 78 HLLGPREFRAVRLDRNRNK--ITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGV 154 (722)
T ss_pred ecCCHHHhhHHHhhchhhh--CCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCCh
Confidence 35788888 899999999 99999999999999999997 99999999999996 999999999999999999
Q ss_pred -----------------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcc
Q 013384 136 -----------------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEG 198 (444)
Q Consensus 136 -----------------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G 198 (444)
+||+++|+++...++.+|..++++++|+||||+||+++|++||++|+++++|+|+++..+ |
T Consensus 155 ~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~--g 232 (722)
T PRK07877 155 FDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR--G 232 (722)
T ss_pred hhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC--C
Confidence 899999999999999999999999999999999999999999999999999999998555 8
Q ss_pred eEE--EEe-CCCCCceeecCCCCCCCc--------cCC------------------------cccCCCcccchhHHHHHH
Q 013384 199 QLT--VYN-YNGGPCYRCLFPTPPPTT--------ACQ------------------------RCADSGVLGVVPGIIGCL 243 (444)
Q Consensus 199 ~l~--~~~-~~~~~C~~C~~~~~~~~~--------~~~------------------------~c~~~~~~~~~~~i~g~l 243 (444)
++. .|. .+.+|||.|+|+..+... ..+ .-..++.++..+.+.|++
T Consensus 233 ~~~~e~~~~~p~~pc~~cl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~s~~~~~~~~~~~pql~~~~~~~~~~ 312 (722)
T PRK07877 233 LLDVERFDLEPDRPILHGLLGDIDAAKLAGLSTKDKVPHVLRILDAEALSARMAASLVEVDQTLSTWPQLASDVVLGAAA 312 (722)
T ss_pred CcCcceeeeCCCCceeeccCCCCChhhhccCChhccCcceeeeccccccCHHHHHHHHhccCccccCCchHHHHHhhHHH
Confidence 774 232 247999999998754211 000 111244677777888889
Q ss_pred HHHHHHHHHhcCCC
Q 013384 244 QALEAIKVASAVGE 257 (444)
Q Consensus 244 ~a~e~lk~l~g~~~ 257 (444)
.+..+.|++.|..-
T Consensus 313 ~~~~~~~i~l~~~~ 326 (722)
T PRK07877 313 VAEAVRRIGLGEPL 326 (722)
T ss_pred HHHHHHHHHcCCcC
Confidence 98888899988743
No 26
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.97 E-value=4.5e-30 Score=238.35 Aligned_cols=263 Identities=24% Similarity=0.396 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccCCCCCCCCCCCCCCCCHHHH--hhhhccccCCCCC-HHHHHhhhc
Q 013384 17 IETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGSYRPSSAVDYGLSPDMI--YRYSRHLLLPSFG-VEGQSNLLK 93 (444)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~ry~Rq~~l~~~g-~~~q~~L~~ 93 (444)
++.|-..+..++++|..++..+......+. ..+..... |+...+...||.+-+ ..|+|-|.|..+| .+..++++.
T Consensus 5 ~~~l~~~ld~l~~~l~d~~~~~~~e~~~~~-~~t~~~~~-p~~R~kieklSsEVVDSNPYSRLMALqRMgIV~dYErIR~ 82 (422)
T KOG2336|consen 5 FKALLDDLDVLQKRLSDLKLELKLESSSEN-LATLSKCN-PHRRSKIEKLSSEVVDSNPYSRLMALQRMGIVDDYERIRE 82 (422)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccccC-cccCCCCC-chhhHHHHHhhhhHhcCChHHHHHHHHHhcchhhHHHHhh
Confidence 334444555556666666665553322110 00011111 121122346777665 6899999999899 578999999
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc----------------------ccCcceEEEEeecCCc
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR----------------------INSTVHIIEHREALRT 151 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R----------------------lnp~~~v~~~~~~~~~ 151 (444)
..|.|||.||+||-+|..|.|+|+|++.|+|+|.|+..|+|| +||++.++.|+..++.
T Consensus 83 ~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLFf~P~QaGlsKv~AA~~TL~~iNPDV~iE~hn~NITT 162 (422)
T KOG2336|consen 83 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPDQAGLSKVDAAVQTLAEINPDVVIEVHNYNITT 162 (422)
T ss_pred heeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccccCcccccchHHHHHHHHHHhcCCCeEEEEeecceee
Confidence 999999999999999999999999999999999999999999 8999999999998875
Q ss_pred -ccHHhhc-----------CCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcc--cCCcceEEEEeCCCCCceeecCCC
Q 013384 152 -SNALEIL-----------SQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA--LGLEGQLTVYNYNGGPCYRCLFPT 217 (444)
Q Consensus 152 -~~~~~~~-----------~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~--~g~~G~l~~~~~~~~~C~~C~~~~ 217 (444)
+|...|. +..|+|+.|+||+++|..+|.+|...+..|+..|+ ....|+++.+.|+.++||.|.-|-
T Consensus 163 venFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~WmESGVSEnAVSGHIQ~i~PGetACFACaPPl 242 (422)
T KOG2336|consen 163 VENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQTWMESGVSENAVSGHIQLIVPGETACFACAPPL 242 (422)
T ss_pred ehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhHHHHccCccccccceeEEecCCccceecccCce
Confidence 4544442 35899999999999999999999999999998765 557899999999999999998542
Q ss_pred CCC--Ccc-----CCcccCCCcccchhHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEEeeccCCCCC
Q 013384 218 PPP--TTA-----CQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQCE 286 (444)
Q Consensus 218 ~~~--~~~-----~~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~~~~~~~~~~~d~~~~~~~~~~~~~r~~~C~ 286 (444)
--. ... ..-|+ .+++.+.++++++.++.++|+|++.++. ..++.|+..+.-|.+..++ ++|+|.
T Consensus 243 VVAs~IDErTLKReGVCA--ASLPTTMgvvAG~LVqN~LK~LLNFGeV--S~YlGYNal~DFFP~msmk-PNPqCd 313 (422)
T KOG2336|consen 243 VVASGIDERTLKREGVCA--ASLPTTMGVVAGFLVQNSLKFLLNFGEV--SPYLGYNALSDFFPTMSMK-PNPQCD 313 (422)
T ss_pred eeecCcchhhhhhcceee--ecCcchHHHHHHHHHHHHHHHHhhcccc--chhhcchhHHhhCccccCC-CCCCCC
Confidence 110 000 11233 5688899999999999999999999875 3488899999889999998 899884
No 27
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.97 E-value=2.5e-29 Score=241.25 Aligned_cols=189 Identities=26% Similarity=0.355 Sum_probs=155.9
Q ss_pred CCCHHHHhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc---------
Q 013384 65 GLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--------- 135 (444)
Q Consensus 65 ~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R--------- 135 (444)
.||.++.+||+||.+| ||.++|++|++++|+|+|+||+||++|++|+++|||+|+|||.|.|+.+|+||
T Consensus 4 ~~~~~~~~rf~R~~~L--~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~v 81 (268)
T PRK15116 4 VISDAWRQRFGGTARL--YGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNV 81 (268)
T ss_pred CCCHHHHHHHhhHHHH--hCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhc
Confidence 4888899999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred --------------ccCcceEEEEeecCCcccHHhhcC-CCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcc--
Q 013384 136 --------------INSTVHIIEHREALRTSNALEILS-QYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEG-- 198 (444)
Q Consensus 136 --------------lnp~~~v~~~~~~~~~~~~~~~~~-~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G-- 198 (444)
+||+++|+.+...+++++..+++. +||+||+|+|++..+..|+++|+++++|+|+++..|-.-
T Consensus 82 G~~Kve~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp 161 (268)
T PRK15116 82 GLAKAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDP 161 (268)
T ss_pred ChHHHHHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCC
Confidence 899999999988888888877774 799999999999999999999999999999986443221
Q ss_pred -eEEEEe-------C----------C-CC--------CceeecCCCCCCCcc-----------------CCccc-CCCcc
Q 013384 199 -QLTVYN-------Y----------N-GG--------PCYRCLFPTPPPTTA-----------------CQRCA-DSGVL 233 (444)
Q Consensus 199 -~l~~~~-------~----------~-~~--------~C~~C~~~~~~~~~~-----------------~~~c~-~~~~~ 233 (444)
.+.+-. | . .+ .-+.|.|+..++... .-+|. ..|+.
T Consensus 162 ~~~~~~di~~t~~~pla~~~R~~lr~~~~~~~~~~~~~~~~~v~S~E~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~gs~ 241 (268)
T PRK15116 162 TQIQVVDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQADGSVCAMKSTAEGPKRMDCASGFGAA 241 (268)
T ss_pred CeEEEEeeecccCChHHHHHHHHHHHhhCCCcccCccCCeEEEeCCCcCCCCCcccccccccccccccccccCCCCCCcc
Confidence 122210 1 1 01 125678876543110 01453 45889
Q ss_pred cchhHHHHHHHHHHHHHHHhcC
Q 013384 234 GVVPGIIGCLQALEAIKVASAV 255 (444)
Q Consensus 234 ~~~~~i~g~l~a~e~lk~l~g~ 255 (444)
..+++++|.++|.++++-|.+.
T Consensus 242 ~~v~~~~G~~~a~~vi~~l~~~ 263 (268)
T PRK15116 242 TMVTATFGFVAVSHALKKMMAK 263 (268)
T ss_pred eehhHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988653
No 28
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.96 E-value=4.2e-29 Score=244.73 Aligned_cols=123 Identities=30% Similarity=0.613 Sum_probs=115.7
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-----------------------ccCcceEEEEeecCCc
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-----------------------INSTVHIIEHREALRT 151 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-----------------------lnp~~~v~~~~~~~~~ 151 (444)
+|+|||+||+||+++++|+++|||+|+|+|.|.|+.+||+| +||+++++.+...++.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999 7999999999988875
Q ss_pred c-cHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEEEEeCCCCCceeecCCC
Q 013384 152 S-NALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPT 217 (444)
Q Consensus 152 ~-~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~~~~~~~C~~C~~~~ 217 (444)
. ...++++++|+||+|.|+++.|.++|++|+..++|+|++++.|+.|++.++.|+.++||.|....
T Consensus 81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~ 147 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKE 147 (312)
T ss_pred ccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCC
Confidence 3 35688999999999999999999999999999999999999999999999999999999998543
No 29
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.96 E-value=1.1e-28 Score=228.86 Aligned_cols=163 Identities=26% Similarity=0.355 Sum_probs=137.7
Q ss_pred CCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc----------------------ccCc
Q 013384 82 SFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR----------------------INST 139 (444)
Q Consensus 82 ~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R----------------------lnp~ 139 (444)
.+|.+.|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+.+||+| +||.
T Consensus 10 ~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~ 89 (200)
T TIGR02354 10 RHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPY 89 (200)
T ss_pred hcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCC
Confidence 379999999999999999999999999999999999999999999999999999 8999
Q ss_pred ceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHH-c-CCcEEEEcccCCcceE--EEEeC--CCCCceee
Q 013384 140 VHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV-L-GKPLVSGAALGLEGQL--TVYNY--NGGPCYRC 213 (444)
Q Consensus 140 ~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~-~-~~p~i~~~~~g~~G~l--~~~~~--~~~~C~~C 213 (444)
++++.+...++.++..++++++|+||+|+|++++|..+++.|.. . ..+++.++ |+.|+. ..+.+ ...+||.|
T Consensus 90 ~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~~--g~~g~~~~~~~~~~~~~~~~~~~ 167 (200)
T TIGR02354 90 TEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAAS--GLAGYDDANSIKTRKISKHFYLC 167 (200)
T ss_pred CEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEEe--ccccCCCCceEEecccCCCEEEc
Confidence 99999999999888889999999999999999999887666544 4 44556653 555544 33433 34578888
Q ss_pred cCCCCCCCccCCcccCCCcccchhHHHHHHHHHHHHHHH
Q 013384 214 LFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVA 252 (444)
Q Consensus 214 ~~~~~~~~~~~~~c~~~~~~~~~~~i~g~l~a~e~lk~l 252 (444)
- ..+ ...|...|+++|+++++|+|||.+++|++
T Consensus 168 ~--~~~----~~~~~~~g~~~p~v~~~a~~qa~~~l~~~ 200 (200)
T TIGR02354 168 G--DGK----SDAKQGLGLMAPRVQICAAHQANLVLELI 200 (200)
T ss_pred C--CCC----CcccCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 2 221 23688899999999999999999999974
No 30
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.96 E-value=1.5e-28 Score=223.21 Aligned_cols=149 Identities=30% Similarity=0.391 Sum_probs=135.0
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc----------------------ccCcceEEEEeecCCcc
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR----------------------INSTVHIIEHREALRTS 152 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R----------------------lnp~~~v~~~~~~~~~~ 152 (444)
+|+|+|+||+|++++++|+++|||+|+|+|.|.|+.+||+| +||+++++.++..++.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~ 80 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN 80 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence 69999999999999999999999999999999999999998 79999999999999988
Q ss_pred cHHhhcCCCcEEEEccCChHhHHHHHHHHHHc-CCcEEEEcccCCcceEEEEeCCC--CCceeecCCCCCCCccCCcccC
Q 013384 153 NALEILSQYEIVVDATDNAPSRYMISDCCVVL-GKPLVSGAALGLEGQLTVYNYNG--GPCYRCLFPTPPPTTACQRCAD 229 (444)
Q Consensus 153 ~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~-~~p~i~~~~~g~~G~l~~~~~~~--~~C~~C~~~~~~~~~~~~~c~~ 229 (444)
+..++++++|+||+|+|++.+|..+++.|.+. ++|+|+++..++.|++..+.++. .+||+|. ...+ ..|..
T Consensus 81 ~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~ 154 (174)
T cd01487 81 NLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG-DLVN-----EAKEG 154 (174)
T ss_pred hHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee-cCCC-----CCCCC
Confidence 88899999999999999999999888888777 99999999999999998887654 5799998 1111 23778
Q ss_pred CCcccchhHHHHHHHHHHHH
Q 013384 230 SGVLGVVPGIIGCLQALEAI 249 (444)
Q Consensus 230 ~~~~~~~~~i~g~l~a~e~l 249 (444)
.|+++|+++++|+++|.|++
T Consensus 155 ~g~~~~~~~~~~~~~~~e~~ 174 (174)
T cd01487 155 LGLMAPRVNICAAHQANLVL 174 (174)
T ss_pred cCccccHHHHHHHHHHHhhC
Confidence 99999999999999999985
No 31
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=99.96 E-value=3.9e-28 Score=229.46 Aligned_cols=122 Identities=25% Similarity=0.500 Sum_probs=115.2
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-----------------------ccCcceEEEEeecCCc
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-----------------------INSTVHIIEHREALRT 151 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-----------------------lnp~~~v~~~~~~~~~ 151 (444)
||+|||+||+||+++++|+++|||+|+|+|.|.|+.|||+| +||+++++.+..++.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 69999999999999999999999999999999999999999 8999999999998864
Q ss_pred cc--HHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEEEEeCCCCCceeecCC
Q 013384 152 SN--ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFP 216 (444)
Q Consensus 152 ~~--~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~~~~~~~C~~C~~~ 216 (444)
++ ..++++++|+||+|+|+.++|.++|++|+..++|+|++++.|+.|++.++.|+.++||+|.+.
T Consensus 81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~ 147 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLY 147 (234)
T ss_pred hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCC
Confidence 32 357889999999999999999999999999999999999999999999999999999999983
No 32
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.4e-28 Score=227.32 Aligned_cols=206 Identities=26% Similarity=0.472 Sum_probs=167.7
Q ss_pred CHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-----------------------ccCcc
Q 013384 84 GVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-----------------------INSTV 140 (444)
Q Consensus 84 g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-----------------------lnp~~ 140 (444)
+.+..+.|.+.+|+|+|+||+||+++++|+.+|++.+++||-|+++.+|||| ..|.+
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~ 110 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGC 110 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCc
Confidence 4667788899999999999999999999999999999999999999999999 45778
Q ss_pred eEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHc---C-------CcEEEEcccCCcceEEEEeCCCCCc
Q 013384 141 HIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVL---G-------KPLVSGAALGLEGQLTVYNYNGGPC 210 (444)
Q Consensus 141 ~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~---~-------~p~i~~~~~g~~G~l~~~~~~~~~C 210 (444)
.|.+|..++.+ ...+|+++||+||...|+.+.|.|||...++. | +|+|++|+.|+.|++.++.|+.++|
T Consensus 111 ~v~~h~~kIqd-~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~TaC 189 (422)
T KOG2015|consen 111 VVVPHRQKIQD-KPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGITAC 189 (422)
T ss_pred EEeeeecchhc-CCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCccHH
Confidence 88888888774 44678899999999999999999999987542 3 5999999999999999999999999
Q ss_pred eeecCCCCCCCccCCcccC-------------------------------------------------------------
Q 013384 211 YRCLFPTPPPTTACQRCAD------------------------------------------------------------- 229 (444)
Q Consensus 211 ~~C~~~~~~~~~~~~~c~~------------------------------------------------------------- 229 (444)
+.|.....|+..+.+-|.-
T Consensus 190 ieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwpe~~~~g~~~~gdd~~hI~wi~er~~eRA~ef~I~gv~~~lv 269 (422)
T KOG2015|consen 190 IECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWPELNPFGVPLDGDDPEHIEWIVERSNERANEFNITGVTRRLV 269 (422)
T ss_pred HHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcchhhCccCCCCCCCCHHHHHHHHHHHHHHhhhcccccchHHhh
Confidence 9998543333222221110
Q ss_pred -------CCcccchhHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCe-EEEEEeeccCCCCCccCCCC
Q 013384 230 -------SGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSAR-IRIVKIRGRSSQCEACGENS 292 (444)
Q Consensus 230 -------~~~~~~~~~i~g~l~a~e~lk~l~g~~~~~~~~~~~~d~~~~~-~~~~~~~~r~~~C~~Cg~~~ 292 (444)
.+....+.+++++..|.||+|+++....++ +.++.|+...+- ..++.+. |.++|++||..+
T Consensus 270 tGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~-~Nym~~n~~eG~ytytf~~e-r~~nC~vCS~~~ 338 (422)
T KOG2015|consen 270 TGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPL-DNYMNYNAEEGIYTYTFLLE-RDKNCPVCSNLV 338 (422)
T ss_pred hhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhh-hhheeeecccceeEEEeeec-cCCCCccccCCC
Confidence 111233456899999999999999988765 457888888876 5666666 999999998743
No 33
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.95 E-value=1.5e-27 Score=219.34 Aligned_cols=186 Identities=25% Similarity=0.382 Sum_probs=154.6
Q ss_pred HHHHhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc------------
Q 013384 68 PDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR------------ 135 (444)
Q Consensus 68 ~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R------------ 135 (444)
....+||+|..+| +|.++.++|++++|+|+|+||+||+++..|+|+|+|+|+|||.|.|..+|+||
T Consensus 7 ~~~~~rf~~~~~l--~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~ 84 (263)
T COG1179 7 DAYRQRFGGIARL--YGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKP 84 (263)
T ss_pred HHHHHHhhhHHHH--cChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccH
Confidence 5556899999999 99999999999999999999999999999999999999999999999999999
Q ss_pred -----------ccCcceEEEEeecCCcccHHhhcC-CCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcc---eE
Q 013384 136 -----------INSTVHIIEHREALRTSNALEILS-QYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEG---QL 200 (444)
Q Consensus 136 -----------lnp~~~v~~~~~~~~~~~~~~~~~-~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G---~l 200 (444)
+||+++|..++..++++|..+++. +||+||||.|+..++..|-.+|+++++|+|+.+..|-.- ++
T Consensus 85 Kv~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPTri 164 (263)
T COG1179 85 KVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDPTRI 164 (263)
T ss_pred HHHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCCCceE
Confidence 899999999999999999998874 599999999999999999999999999999976433221 22
Q ss_pred EEEe---------------------CCCCCceeecCCCCCC--Cc-c-----C---------CcccC-CCcccchhHHHH
Q 013384 201 TVYN---------------------YNGGPCYRCLFPTPPP--TT-A-----C---------QRCAD-SGVLGVVPGIIG 241 (444)
Q Consensus 201 ~~~~---------------------~~~~~C~~C~~~~~~~--~~-~-----~---------~~c~~-~~~~~~~~~i~g 241 (444)
.+-. |+..--..|.|+..++ +. . . ..|.. .|+++++++++|
T Consensus 165 ~v~DiskT~~DPLa~~vR~~LRk~~~~~~~gi~vVfS~E~~~~P~~d~~~~~~~~~~~~~~~~~c~~~~gs~~~Vta~fG 244 (263)
T COG1179 165 QVADISKTIQDPLAAKVRRKLRKRFPKIKFGVPVVFSTENPVYPQADGSVCAIDATAESAKRLDCARGLGSATFVTAVFG 244 (263)
T ss_pred EeeechhhccCcHHHHHHHHHHHhccCCccCCceEecCCCCCCCcccccccccchhhccchhhhhhcCCCcccccchHHH
Confidence 2211 1111224578875433 11 0 0 13665 789999999999
Q ss_pred HHHHHHHHHHHhcC
Q 013384 242 CLQALEAIKVASAV 255 (444)
Q Consensus 242 ~l~a~e~lk~l~g~ 255 (444)
..+|.++++-+...
T Consensus 245 l~~as~vv~~i~~~ 258 (263)
T COG1179 245 LVAASEVVKKILDK 258 (263)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 34
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.95 E-value=7.9e-28 Score=266.90 Aligned_cols=154 Identities=27% Similarity=0.475 Sum_probs=141.0
Q ss_pred HhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCC-----CcEEEeeCCccccccccc----------
Q 013384 71 IYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGV-----GRLGIVDHDVVELNNMHR---------- 135 (444)
Q Consensus 71 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gv-----g~i~lvD~D~V~~sNl~R---------- 135 (444)
.+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|+|+.|||||
T Consensus 399 ~~RYdrqi~l--~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIG 476 (1008)
T TIGR01408 399 GDRYDAQIAV--FGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIG 476 (1008)
T ss_pred hhhhHHHHHH--cCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcC
Confidence 4899999999 99999999999999999999999999999999999 899999999999999999
Q ss_pred -------------ccCcceEEEEeecCCccc--H--HhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcc
Q 013384 136 -------------INSTVHIIEHREALRTSN--A--LEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEG 198 (444)
Q Consensus 136 -------------lnp~~~v~~~~~~~~~~~--~--~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G 198 (444)
+||.++++++...+.+++ . .++++++|+||+|+|+.++|.++|+.|+.+++|+|.+++.|+.|
T Consensus 477 k~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G 556 (1008)
T TIGR01408 477 KPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKG 556 (1008)
T ss_pred cHHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCcee
Confidence 899999999999887543 2 47789999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCCceeecCCCCCCCccCCccc
Q 013384 199 QLTVYNYNGGPCYRCLFPTPPPTTACQRCA 228 (444)
Q Consensus 199 ~l~~~~~~~~~C~~C~~~~~~~~~~~~~c~ 228 (444)
++.++.|+.+.||.|... |+....+.|.
T Consensus 557 ~v~v~ip~~te~y~~~~d--~~~~~~P~Ct 584 (1008)
T TIGR01408 557 NTQVVVPHLTESYGSSRD--PPEKEIPFCT 584 (1008)
T ss_pred eEEEEeCCCcCCCCCCCC--CCCCCCCccc
Confidence 999999999999999843 3334455664
No 35
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-27 Score=235.52 Aligned_cols=129 Identities=29% Similarity=0.594 Sum_probs=123.3
Q ss_pred HHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-----------------------ccCcceE
Q 013384 86 EGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-----------------------INSTVHI 142 (444)
Q Consensus 86 ~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-----------------------lnp~~~v 142 (444)
+.+++++++|||||||||+||+++++|++.|+++|+|||-|+|+.||||| +||.+++
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l 84 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKL 84 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCce
Confidence 56788899999999999999999999999999999999999999999999 8999999
Q ss_pred EEEeecCCcc-cHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEEEEeCCCCCceeec
Q 013384 143 IEHREALRTS-NALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCL 214 (444)
Q Consensus 143 ~~~~~~~~~~-~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~~~~~~~C~~C~ 214 (444)
.+|...+... ...++|++||+|++|.||.++|.++|+.|....+|+|.+|+.|+.||++++.+|++-||.|.
T Consensus 85 ~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~ 157 (603)
T KOG2013|consen 85 VPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYECI 157 (603)
T ss_pred EeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceeccc
Confidence 9999988754 67888999999999999999999999999999999999999999999999999999999998
No 36
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.94 E-value=9.9e-27 Score=219.67 Aligned_cols=167 Identities=31% Similarity=0.437 Sum_probs=138.3
Q ss_pred CCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-----------------------ccCc
Q 013384 83 FGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-----------------------INST 139 (444)
Q Consensus 83 ~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-----------------------lnp~ 139 (444)
+|.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++|||| +||+
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 68999999999999999999999999999999999999999999999999999 8999
Q ss_pred ceEEEEeecCCcccHHhhcC-CCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCc---ceEEEEe-------C---
Q 013384 140 VHIIEHREALRTSNALEILS-QYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLE---GQLTVYN-------Y--- 205 (444)
Q Consensus 140 ~~v~~~~~~~~~~~~~~~~~-~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~---G~l~~~~-------~--- 205 (444)
++++.+...+++++..+++. ++|+||+|+|++..+..|+++|+++++|+|+++..|.. .++.+-. |
T Consensus 81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~ 160 (231)
T cd00755 81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISKTSGDPLAR 160 (231)
T ss_pred cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEeccccCcHHH
Confidence 99999999999888887774 69999999999999999999999999999997655543 2333311 1
Q ss_pred ---------CCCCceeecCCCCCCCc------------------cCCcccCCCcccchhHHHHHHHHHHHH
Q 013384 206 ---------NGGPCYRCLFPTPPPTT------------------ACQRCADSGVLGVVPGIIGCLQALEAI 249 (444)
Q Consensus 206 ---------~~~~C~~C~~~~~~~~~------------------~~~~c~~~~~~~~~~~i~g~l~a~e~l 249 (444)
+...=..|.|+..++.. ....|...|+++.+|+++|.++|.+++
T Consensus 161 ~~R~~Lrk~~~~~~~~~v~S~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~vp~~~G~~~a~~vi 231 (231)
T cd00755 161 KVRKRLRKRGIFFGVPVVYSTEPPDPPKADELVCGDEVGADAALQGLRRAGLGSASTVPAVFGLAIASEVI 231 (231)
T ss_pred HHHHHHHHcCCCCCeEEEeCCCCCCCCccccccccccccccccccCCCCCCCCcceechHHHHHHHHHhhC
Confidence 11112568887654321 112345678999999999999999874
No 37
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.94 E-value=6.3e-26 Score=251.79 Aligned_cols=127 Identities=27% Similarity=0.382 Sum_probs=120.2
Q ss_pred HHhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc--------------
Q 013384 70 MIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-------------- 135 (444)
Q Consensus 70 ~~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-------------- 135 (444)
+..+|+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|
T Consensus 3 d~~lYsRQi~l--~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Ka 80 (1008)
T TIGR01408 3 DEALYSRQLYV--LGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRA 80 (1008)
T ss_pred hHhhhhhHHHh--cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHH
Confidence 35899999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ---------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcC--CcEEEEcccCCcceEEE
Q 013384 136 ---------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLG--KPLVSGAALGLEGQLTV 202 (444)
Q Consensus 136 ---------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~--~p~i~~~~~g~~G~l~~ 202 (444)
+||.++|+++...++ .+++++||+||+|.|+...+..||++|++++ +|+|++++.|+.|++..
T Consensus 81 ea~~~~L~eLNp~V~V~~~~~~l~----~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~ 154 (1008)
T TIGR01408 81 EAVVKKLAELNPYVHVSSSSVPFN----EEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFC 154 (1008)
T ss_pred HHHHHHHHHHCCCceEEEecccCC----HHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEe
Confidence 899999999987775 3588999999999999999999999999999 89999999999998754
No 38
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.94 E-value=2e-25 Score=214.96 Aligned_cols=196 Identities=19% Similarity=0.212 Sum_probs=144.3
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-------------------------ccCcceEEEEeecC
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-------------------------INSTVHIIEHREAL 149 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-------------------------lnp~~~v~~~~~~~ 149 (444)
||+|||+||+||++|++|+++|||+|+|||+|.|+.+||+| +||+++++.+...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 69999999999999999999999999999999999999999 79999999987654
Q ss_pred -----------------CcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEEEEeC-C-----
Q 013384 150 -----------------RTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY-N----- 206 (444)
Q Consensus 150 -----------------~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~~~-~----- 206 (444)
+.++..++++++|+||+|+|+.++|++++.+|..+++|+|+ ++.|+.|++...+. +
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~-aalGfdg~lvmrhg~~~~~~~ 159 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN-AALGFDSYLVMRHGAGPQSQS 159 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE-EEeccceEEEEEeCCCccccc
Confidence 23456788999999999999999999999999999999998 58899999987652 1
Q ss_pred -------------CCCceeecCCCCCCCcc--CCcccCCCcccchhHHHHHHHHHHHHHHHhcCCCCC------------
Q 013384 207 -------------GGPCYRCLFPTPPPTTA--CQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPL------------ 259 (444)
Q Consensus 207 -------------~~~C~~C~~~~~~~~~~--~~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~~~~------------ 259 (444)
..+||.|.-...|.... .+--..-.|.-|-.+.+++-+|.|.+-.++..+...
T Consensus 160 ~~~~~~~~~~~~~~lgCYfCnDv~ap~~s~~drtlDqqctvtrpG~a~ias~~avEl~~s~lqhp~~~~a~~~~~~~~~~ 239 (307)
T cd01486 160 GSGDSSSDSIPGSRLGCYFCNDVVAPGDSLKDRTLDQQCTVTRPGLSMIASSIAVELLVSLLQHPLGGHAPAESSSNEGD 239 (307)
T ss_pred ccccccccccCCCCcceeeeCCEecCCCCCCCcccCcccceecCchHHHHHHHHHHHHHHHHcCCCccCCCCccccccCC
Confidence 46799998544433211 111112235556666677777777777776653110
Q ss_pred ------CCceeEeecCCCeEEEEEee-ccCCCCCccCCC
Q 013384 260 ------SGRMLLFDALSARIRIVKIR-GRSSQCEACGEN 291 (444)
Q Consensus 260 ------~~~~~~~d~~~~~~~~~~~~-~r~~~C~~Cg~~ 291 (444)
.---+.+-++-.+|..+++. ++.+.|.+|++.
T Consensus 240 ~~~~~lg~~Phqirg~l~~~~~~~~~~~~~~~C~aCs~~ 278 (307)
T cd01486 240 EPTTVLGILPHQIRGFLSNFSNLTLSGQAYDQCTACSDA 278 (307)
T ss_pred CCCCcCccCCeeeeeehhhCeeeeecccCCCccccCCHH
Confidence 00011222222334444443 478899999874
No 39
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.93 E-value=1.2e-25 Score=229.27 Aligned_cols=181 Identities=22% Similarity=0.277 Sum_probs=149.3
Q ss_pred hhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc----------------
Q 013384 72 YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR---------------- 135 (444)
Q Consensus 72 ~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R---------------- 135 (444)
.|||||++| ||.+||++|.+++|+|||+||+|++++++|+++|||+|+|+|+|.|+.+||+|
T Consensus 1 ~rYDRQlrL--wG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~ 78 (425)
T cd01493 1 QKYDRQLRL--WGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEA 78 (425)
T ss_pred CcchHHHHH--hHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHH
Confidence 489999999 99999999999999999999999999999999999999999999999999999
Q ss_pred -------ccCcceEEEEeecCCc--ccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEEEEeCC
Q 013384 136 -------INSTVHIIEHREALRT--SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYN 206 (444)
Q Consensus 136 -------lnp~~~v~~~~~~~~~--~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~~~~ 206 (444)
+||+++++.+...+.. ++..++++++|+||+|.++...+..|+++|++.++|+|.+++.|+.|++.+..+
T Consensus 79 ~~~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~v~~~- 157 (425)
T cd01493 79 TCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQLK- 157 (425)
T ss_pred HHHHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEEEEEC-
Confidence 8999999999876652 345788999999999999999999999999999999999999999999998775
Q ss_pred CCCceeec-------------CCCCCCCccC--CcccCCCcccchhHHHHHHHHHHHHHHHhcC
Q 013384 207 GGPCYRCL-------------FPTPPPTTAC--QRCADSGVLGVVPGIIGCLQALEAIKVASAV 255 (444)
Q Consensus 207 ~~~C~~C~-------------~~~~~~~~~~--~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~ 255 (444)
...+..+. ||+....... ..-.+...++++|.++-.+.+++.+|.-.+.
T Consensus 158 ~h~i~et~p~~~~~DLRL~~P~peL~~~~~~~dl~~ld~~~h~hvPy~viL~~~l~~w~~~~~g 221 (425)
T cd01493 158 EHTIVESHPDNALEDLRLDNPFPELREHADSIDLDDMDPAEHSHTPYIVILIKYLEKWRSAHNG 221 (425)
T ss_pred CeEEEECCCCCCCcCcccCCCcHHHHHHHHhcCCccCChhhcCCCCHHHHHHHHHHHHHHhcCC
Confidence 23333322 2211110000 0112234578999999999999998877653
No 40
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.93 E-value=1.4e-24 Score=224.38 Aligned_cols=221 Identities=14% Similarity=0.224 Sum_probs=174.6
Q ss_pred CCCCCHHHHhhhhccccC-CCC---CHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc---
Q 013384 63 DYGLSPDMIYRYSRHLLL-PSF---GVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--- 135 (444)
Q Consensus 63 ~~~l~~~~~~ry~Rq~~l-~~~---g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R--- 135 (444)
++.|++...+||..|+.+ ..| |....++.++++|+|+|.||+|+.++..|+.+|+++|..||+|.+ .||++|
T Consensus 95 p~~L~~a~lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnRIgE 173 (637)
T TIGR03693 95 PHELESALLDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDRIHE 173 (637)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhHHHH
Confidence 346999999999999965 222 345556679999999999999999999999999999999999999 999998
Q ss_pred -------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCCh--HhHHHHHHHHHHcCCcEEE---EcccCCcceEEEE
Q 013384 136 -------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNA--PSRYMISDCCVVLGKPLVS---GAALGLEGQLTVY 203 (444)
Q Consensus 136 -------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~--~~r~~i~~~~~~~~~p~i~---~~~~g~~G~l~~~ 203 (444)
+||++.++.++. -..+...++++++|+||..+|++ ....++|+.|++.++|||- +|..++.|.+ +
T Consensus 174 l~e~A~~~n~~v~v~~i~~-~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~liGPl--f 250 (637)
T TIGR03693 174 LAEIAEETDDALLVQEIDF-AEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGLAGPV--F 250 (637)
T ss_pred HHHHHHHhCCCCceEeccC-CcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccceeecce--E
Confidence 699999999876 33567888999999999999966 4456999999999966655 4555555544 4
Q ss_pred eCCCCCceeecCCCCCCCccCCcccCCCcccc-hhHHHHHHHHHHHHHHHhcCCCC-CCCceeEeecCCCeEEEEEeecc
Q 013384 204 NYNGGPCYRCLFPTPPPTTACQRCADSGVLGV-VPGIIGCLQALEAIKVASAVGEP-LSGRMLLFDALSARIRIVKIRGR 281 (444)
Q Consensus 204 ~~~~~~C~~C~~~~~~~~~~~~~c~~~~~~~~-~~~i~g~l~a~e~lk~l~g~~~~-~~~~~~~~d~~~~~~~~~~~~~r 281 (444)
.|+.++||.|.|............ ....++| +.++++.+++.|++|++++..+. ..++++.+|..+.....+++. |
T Consensus 251 tPgkTGCWeCa~~RL~e~~L~~~~-~s~a~sPat~AmlAnviv~ElfK~ITg~~~~es~gqlv~lDleTLE~~WH~vv-k 328 (637)
T TIGR03693 251 QQHGDECFEAAWHRLHESALHEEN-SLAAFPLAGKAMLANIIVFELFKAAADDEHLEKKNQFFLLDLATLEGGWHAFI-K 328 (637)
T ss_pred CCCCCcHHHHHHHHHHHHhcCCCC-cccccCHHHHHHHHHHHHHHHHHHHhccCccccCCcEEEEEccccccccccCC-C
Confidence 589999999976221110000011 2234444 48999999999999999986444 558999999999998888888 9
Q ss_pred CCCCCccCC
Q 013384 282 SSQCEACGE 290 (444)
Q Consensus 282 ~~~C~~Cg~ 290 (444)
+|.|+ |..
T Consensus 329 rPqC~-~~~ 336 (637)
T TIGR03693 329 HPDAS-CEK 336 (637)
T ss_pred CCCCC-CCC
Confidence 99999 863
No 41
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.92 E-value=7.9e-25 Score=222.33 Aligned_cols=133 Identities=26% Similarity=0.451 Sum_probs=120.8
Q ss_pred cEEEECCCccHHHHHHHHHHcCC-----CcEEEeeCCccccccccc-----------------------ccCcceEEEEe
Q 013384 95 SILVIGAGGLGSPALLYLAACGV-----GRLGIVDHDVVELNNMHR-----------------------INSTVHIIEHR 146 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gv-----g~i~lvD~D~V~~sNl~R-----------------------lnp~~~v~~~~ 146 (444)
+|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+| +||+++++.+.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 999999999999999999 89999999999
Q ss_pred ecCCcccH----HhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEEEEeCCCCCceeecCCCCCCCc
Q 013384 147 EALRTSNA----LEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYNGGPCYRCLFPTPPPTT 222 (444)
Q Consensus 147 ~~~~~~~~----~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~~~~~~~C~~C~~~~~~~~~ 222 (444)
..+.+++. .++++++|+||+|+|++++|.+||+.|+..++|+|.+++.|+.|++.++.|+.++||+|... |+..
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~--p~~~ 158 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRD--PPEK 158 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCC--CCCC
Confidence 88875433 47789999999999999999999999999999999999999999999999999999999843 3334
Q ss_pred cCCcccC
Q 013384 223 ACQRCAD 229 (444)
Q Consensus 223 ~~~~c~~ 229 (444)
..+.|.-
T Consensus 159 ~~P~Ctl 165 (435)
T cd01490 159 SIPLCTL 165 (435)
T ss_pred CCCCccc
Confidence 5566753
No 42
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.3e-24 Score=204.81 Aligned_cols=136 Identities=28% Similarity=0.480 Sum_probs=124.6
Q ss_pred CCCCHHHHhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc--------
Q 013384 64 YGLSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-------- 135 (444)
Q Consensus 64 ~~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-------- 135 (444)
.+||++|+.-||||++| ||.+.|++|+++||+|+|.+|+|.+++++|..+|||+++++|+-.|.+..++-
T Consensus 4 ~else~E~alYDRQIRL--WG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~ 81 (331)
T KOG2014|consen 4 EELSEQEIALYDRQIRL--WGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASS 81 (331)
T ss_pred hhhhHHHHHHHHHHHHH--ccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhh
Confidence 46899999999999999 99999999999999999999999999999999999999999999999887764
Q ss_pred ---------------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceE
Q 013384 136 ---------------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQL 200 (444)
Q Consensus 136 ---------------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l 200 (444)
+||.|++..-.+.+... ..++|.+||+||..--+.+.+..+|..|++.+++++.+...|+.|+.
T Consensus 82 vg~~raeas~erl~~LNPmV~v~~d~edl~ek-~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~ 160 (331)
T KOG2014|consen 82 VGQTRAEASLERLQDLNPMVDVSVDKEDLSEK-DEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYA 160 (331)
T ss_pred hchHHHHHHHHHHHhcCCceEEEechhhhhhc-chhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeee
Confidence 89999999988877743 47899999999966667788899999999999999999999999987
Q ss_pred EE
Q 013384 201 TV 202 (444)
Q Consensus 201 ~~ 202 (444)
..
T Consensus 161 F~ 162 (331)
T KOG2014|consen 161 FA 162 (331)
T ss_pred ee
Confidence 54
No 43
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.90 E-value=8e-24 Score=184.60 Aligned_cols=110 Identities=35% Similarity=0.656 Sum_probs=103.4
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-----------------------ccCcceEEEEeec
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-----------------------INSTVHIIEHREA 148 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-----------------------lnp~~~v~~~~~~ 148 (444)
|++||+|+|+|++|++++++|+++|+|+|+|+|+|.|+++|++| +||+++++.++..
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 57899999999999999999999999999999999999999999 8999999999999
Q ss_pred CCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEE
Q 013384 149 LRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT 201 (444)
Q Consensus 149 ~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~ 201 (444)
++.++..++++++|+||+|+|+.+.+.+|+++|+++++|+|+++..|+.|++.
T Consensus 81 ~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~ 133 (135)
T PF00899_consen 81 IDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVV 133 (135)
T ss_dssp CSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEE
T ss_pred cccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEE
Confidence 98888889999999999999999999999999999999999999999999984
No 44
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.90 E-value=2.8e-23 Score=196.77 Aligned_cols=185 Identities=21% Similarity=0.206 Sum_probs=148.2
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCC-----C-----cEEEeeCCccccccccc-------------------ccC--c
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGV-----G-----RLGIVDHDVVELNNMHR-------------------INS--T 139 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gv-----g-----~i~lvD~D~V~~sNl~R-------------------lnp--~ 139 (444)
-+..+|+|||+||+||+++++|+++|+ | +|+|+|+|.|++|||+| +|+ .
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~ri~~~~~ 88 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNRLNQAMG 88 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHHHHhccC
Confidence 477899999999999999999999973 4 99999999999999999 343 5
Q ss_pred ceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHH--c-CCcEEEEcccCCcceEEEE-------------
Q 013384 140 VHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVV--L-GKPLVSGAALGLEGQLTVY------------- 203 (444)
Q Consensus 140 ~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~--~-~~p~i~~~~~g~~G~l~~~------------- 203 (444)
++++.+...+.++ .++.++|+||+|+|+.++|..|++.|++ . .+||+++|.-+..||+.+-
T Consensus 89 ~~i~a~~~~~~~~---~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k~~~~~~ 165 (244)
T TIGR03736 89 TDWTAHPERVERS---STLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAKGENRLR 165 (244)
T ss_pred ceEEEEEeeeCch---hhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccccCCcee
Confidence 7888888887762 3456899999999999999999999988 2 4899999997777766543
Q ss_pred eCCCCCceeecCCCCC-CCccCCcccCCCcccchhHHHHHHHHHHHHHHHhcCC--CCCCCceeEeecCCCeEEEEEe
Q 013384 204 NYNGGPCYRCLFPTPP-PTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVG--EPLSGRMLLFDALSARIRIVKI 278 (444)
Q Consensus 204 ~~~~~~C~~C~~~~~~-~~~~~~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~--~~~~~~~~~~d~~~~~~~~~~~ 278 (444)
.|..+.||.|.....+ +..+.++|+...++.+..-++..++|+.+..+|.... ..+.++-.+||+.+++.+.+++
T Consensus 166 lP~vte~y~~~~d~~~~~~~~~PsCsla~al~~Q~l~iN~~~a~~~~~~L~~lf~~g~~~~~g~~~nl~~~~~~p~~v 243 (244)
T TIGR03736 166 LPHVGELFPELIDPSVDPDDDRPSCSLAEALAKQSLFINQAIAVFAMNLLWKLFRKGRLEFHGVFVNLATGRTNPLPV 243 (244)
T ss_pred cCCchhhCcccccCccCCCCCCCCchHHHHhcCchhHHHHHHHHHHHHHHHHHHhcCceeeeEEEEECCCCccccccC
Confidence 3456667777765423 4456789999999999888888888888888775542 2255778889998888776553
No 45
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.88 E-value=3.5e-22 Score=175.95 Aligned_cols=110 Identities=36% Similarity=0.677 Sum_probs=104.9
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-----------------------ccCcceEEEEeecCCc
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-----------------------INSTVHIIEHREALRT 151 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-----------------------lnp~~~v~~~~~~~~~ 151 (444)
+|+|+|+||+|++++++|+++|+++|+|+|+|.|+++||+| +||+++++.++..+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999 7999999999998887
Q ss_pred ccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEEEEe
Q 013384 152 SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYN 204 (444)
Q Consensus 152 ~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~~ 204 (444)
.+..+++.++|+||+|+|+.+.|..++++|+++++|+|+++..|+.|++.++.
T Consensus 81 ~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 77778889999999999999999999999999999999999999999998776
No 46
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.88 E-value=1.9e-22 Score=172.76 Aligned_cols=120 Identities=52% Similarity=0.907 Sum_probs=101.0
Q ss_pred ccCCCCCccCHHHHHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEE
Q 013384 320 NLLSADSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLY 399 (444)
Q Consensus 320 ~~l~~~~~Is~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Iv 399 (444)
.+++...+|+++++.+++.++.+++|||||++.||+.+|||||+|||+..+.++...+...... ....+++++||
T Consensus 2 ~~~~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~~~~~~~~~-----~~~~~~~~~iv 76 (122)
T cd01526 2 KLLSPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAAELKSLQEL-----PLDNDKDSPIY 76 (122)
T ss_pred CCCCcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhhhhhhhhhc-----ccccCCCCcEE
Confidence 5678889999999999987756789999999999999999999999998876654443321000 01124568999
Q ss_pred EEcCCChhHHHHHHHHHHcCC-CCEEEccccHHHHhhCcCCCCCCC
Q 013384 400 VVCRRGNDSQRAVQALHKLGF-TSARDIIGGLESWANDVDPSFPVY 444 (444)
Q Consensus 400 v~C~~G~~S~~aa~~L~~~G~-~~v~~l~GG~~aW~~~~~p~~P~Y 444 (444)
+||++|.+|..++..|++.|| ++|+.+.||+.+|..++++.+|.|
T Consensus 77 v~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~~~~~ 122 (122)
T cd01526 77 VVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPTFPLY 122 (122)
T ss_pred EECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCccCCCC
Confidence 999999999999999999999 799999999999999999999998
No 47
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.87 E-value=1.9e-22 Score=187.52 Aligned_cols=95 Identities=23% Similarity=0.370 Sum_probs=88.1
Q ss_pred CCHHHHhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc----------
Q 013384 66 LSPDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR---------- 135 (444)
Q Consensus 66 l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R---------- 135 (444)
|+++|.+||+||+++ ||.++|++|++++|+|+|+||+|+++++||+++|||+|+|+|+|.|+.+||+|
T Consensus 1 ms~~E~~RYsRQIrL--wG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~dvGk 78 (287)
T PTZ00245 1 MRDAEAVRYDRQIRL--WGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQGEAGG 78 (287)
T ss_pred CCHHHHHHHhHHHHH--hCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhccccccccccCC
Confidence 577889999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ------------ccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 136 ------------INSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 136 ------------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
+||.++|+.++.+++.. ++|++|+-+.
T Consensus 79 ~KAeaAa~~L~eLNP~V~V~~i~~rld~~------n~fqvvV~~~ 117 (287)
T PTZ00245 79 TRGARALGALQRLNPHVSVYDAVTKLDGS------SGTRVTMAAV 117 (287)
T ss_pred cHHHHHHHHHHHHCCCcEEEEcccccCCc------CCceEEEEEc
Confidence 89999999999888764 3788888444
No 48
>PRK06153 hypothetical protein; Provisional
Probab=99.86 E-value=4.5e-21 Score=190.43 Aligned_cols=126 Identities=27% Similarity=0.320 Sum_probs=105.3
Q ss_pred HHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc--------------------------ccC
Q 013384 85 VEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--------------------------INS 138 (444)
Q Consensus 85 ~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R--------------------------lnp 138 (444)
...|++|++++|+||||||+||+++.+|+++|||+|+|||+|.|+.+||+| +|+
T Consensus 168 ~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~ 247 (393)
T PRK06153 168 GALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR 247 (393)
T ss_pred HHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC
Confidence 356999999999999999999999999999999999999999999999999 343
Q ss_pred cceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEEEEeCC-CCCceeecCCC
Q 013384 139 TVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYN-GGPCYRCLFPT 217 (444)
Q Consensus 139 ~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~~~~-~~~C~~C~~~~ 217 (444)
.+.++...+++++.. .+.++|+||+|+|+.+.|.+|+++|..+++|||++|.. +. ...+ .++|.||.+..
T Consensus 248 --~I~~~~~~I~~~n~~-~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~-----l~-~~~g~l~G~~Rvt~~~ 318 (393)
T PRK06153 248 --GIVPHPEYIDEDNVD-ELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG-----LE-LSNGSLGGILRVTLST 318 (393)
T ss_pred --eEEEEeecCCHHHHH-HhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec-----ce-ecCCCcCcEEEEEEec
Confidence 567788888766654 67899999999999999999999999999999998732 00 1111 24588887765
Q ss_pred CC
Q 013384 218 PP 219 (444)
Q Consensus 218 ~~ 219 (444)
+.
T Consensus 319 p~ 320 (393)
T PRK06153 319 PD 320 (393)
T ss_pred CC
Confidence 54
No 49
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.6e-21 Score=184.18 Aligned_cols=200 Identities=28% Similarity=0.413 Sum_probs=155.1
Q ss_pred hhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc----------------
Q 013384 72 YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR---------------- 135 (444)
Q Consensus 72 ~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R---------------- 135 (444)
+...|+..+ ||.++|+||+++-|+||||||+||+++..|+|+|+++|.|||+|.|+.|.|||
T Consensus 55 eqLarN~aF--fGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~c 132 (430)
T KOG2018|consen 55 EQLARNYAF--FGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMC 132 (430)
T ss_pred HHHHhHHhh--hhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHH
Confidence 556888888 99999999999999999999999999999999999999999999999999999
Q ss_pred -------ccCcceEEEEeecCCcccHHhhc-CCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEEEEeC--
Q 013384 136 -------INSTVHIIEHREALRTSNALEIL-SQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNY-- 205 (444)
Q Consensus 136 -------lnp~~~v~~~~~~~~~~~~~~~~-~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~~~-- 205 (444)
+.|.++|.+.+.-++.++..+++ .+.|+|+||.||..++.-+-++|..+++++|++...+....-+-++.
T Consensus 133 lkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksDPTrv~v~D 212 (430)
T KOG2018|consen 133 LKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPTRVNVAD 212 (430)
T ss_pred HHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCCCceeehhh
Confidence 89999999999999988888876 67999999999999999999999999999998654444332222211
Q ss_pred ----CCCCceeec----------------CCCC-CCC---------cc------------CC--cccCCCcccchhHHHH
Q 013384 206 ----NGGPCYRCL----------------FPTP-PPT---------TA------------CQ--RCADSGVLGVVPGIIG 241 (444)
Q Consensus 206 ----~~~~C~~C~----------------~~~~-~~~---------~~------------~~--~c~~~~~~~~~~~i~g 241 (444)
...|-.||. |+.. |.+ +. ++ .-.-.+++|++|+++|
T Consensus 213 is~t~~DPlsR~vRrrLrk~GI~~GIpVVFS~Ekpdprka~lLp~~d~e~erg~~delsav~dfrvRilPvlGtmP~iFG 292 (430)
T KOG2018|consen 213 ISETEEDPLSRSVRRRLRKRGIEGGIPVVFSLEKPDPRKAKLLPLEDEEGERGNVDELSAVPDFRVRILPVLGTMPGIFG 292 (430)
T ss_pred ccccccCcHHHHHHHHHHHhccccCCceEEecCCCCccccccCCCCccccccCChhhhhhccchhhhhcccccCcchHHH
Confidence 222333332 2211 100 00 00 1123578999999999
Q ss_pred HHHHHHHHHHHhcCCC-C--CCCceeEeecCCCeE
Q 013384 242 CLQALEAIKVASAVGE-P--LSGRMLLFDALSARI 273 (444)
Q Consensus 242 ~l~a~e~lk~l~g~~~-~--~~~~~~~~d~~~~~~ 273 (444)
..+|.-+|--+.++.- | ..+++-.||..-.++
T Consensus 293 ltiat~vlt~ia~~pmepi~~~nrlk~Yd~i~q~l 327 (430)
T KOG2018|consen 293 LTIATYVLTQIAQYPMEPIENKNRLKHYDLIHQRL 327 (430)
T ss_pred HHHHHHHHHHHhcCCCCcccccchhHHHHHHHHHH
Confidence 9999999999988742 2 236677777765544
No 50
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.85 E-value=3e-21 Score=161.94 Aligned_cols=102 Identities=20% Similarity=0.359 Sum_probs=87.2
Q ss_pred CCCCccCHHHHHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEc
Q 013384 323 SADSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVC 402 (444)
Q Consensus 323 ~~~~~Is~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C 402 (444)
...+.|+++++.+++.++.+.+|||||++.||..+|||||+|+|+.++...+..+.. +++++|||||
T Consensus 7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~~~~l~~-------------~~~~~ivv~C 73 (109)
T cd01533 7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLRVGELAP-------------DPRTPIVVNC 73 (109)
T ss_pred ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHHHHhcCC-------------CCCCeEEEEC
Confidence 455789999999998876567899999999999999999999999877654433321 2357999999
Q ss_pred CCChhHHHHHHHHHHcCCCC-EEEccccHHHHhhCc
Q 013384 403 RRGNDSQRAVQALHKLGFTS-ARDIIGGLESWANDV 437 (444)
Q Consensus 403 ~~G~~S~~aa~~L~~~G~~~-v~~l~GG~~aW~~~~ 437 (444)
++|.+|..+++.|+..||++ |+++.||+.+|..++
T Consensus 74 ~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 74 AGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred CCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 99999999999999999988 999999999998764
No 51
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.83 E-value=1e-20 Score=156.46 Aligned_cols=100 Identities=18% Similarity=0.340 Sum_probs=83.0
Q ss_pred CccCHHHHHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCCC
Q 013384 326 SRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRG 405 (444)
Q Consensus 326 ~~Is~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~G 405 (444)
..|+++++.+++.+ ++.+|||||++.||+.+|||||+|||+..+......+..... .+++++|||||++|
T Consensus 2 ~~is~~~l~~~~~~-~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~~~~~~~~~---------~~~~~~ivvyC~~G 71 (101)
T cd01518 2 TYLSPAEWNELLED-PEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFPFWLDENLD---------LLKGKKVLMYCTGG 71 (101)
T ss_pred CcCCHHHHHHHHcC-CCEEEEEcCChhhhhcCEeccccCCCcccHhHhHHHHHhhhh---------hcCCCEEEEECCCc
Confidence 35899999998875 468999999999999999999999999876543333332211 13358999999999
Q ss_pred hhHHHHHHHHHHcCCCCEEEccccHHHHhh
Q 013384 406 NDSQRAVQALHKLGFTSARDIIGGLESWAN 435 (444)
Q Consensus 406 ~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~ 435 (444)
.+|..++++|+.+||++|+++.||+.+|.+
T Consensus 72 ~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 72 IRCEKASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred hhHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence 999999999999999999999999999963
No 52
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2e-20 Score=195.40 Aligned_cols=138 Identities=28% Similarity=0.495 Sum_probs=129.1
Q ss_pred hhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCC-----cEEEeeCCccccccccc-----------
Q 013384 72 YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVG-----RLGIVDHDVVELNNMHR----------- 135 (444)
Q Consensus 72 ~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg-----~i~lvD~D~V~~sNl~R----------- 135 (444)
.|||-|+.+ ||..-|+||.+.+|.+||+|++||+++|+++.+||| +|++.|.|.+|.|||||
T Consensus 411 sRYD~qiav--fG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk 488 (1013)
T KOG2012|consen 411 SRYDGQIAV--FGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGK 488 (1013)
T ss_pred Cccccchhh--hchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCc
Confidence 599999999 999999999999999999999999999999999994 79999999999999999
Q ss_pred ------------ccCcceEEEEeecCCccc----HHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcce
Q 013384 136 ------------INSTVHIIEHREALRTSN----ALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQ 199 (444)
Q Consensus 136 ------------lnp~~~v~~~~~~~~~~~----~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~ 199 (444)
+||+++|+++..++.++. ..+||.+.|+|.++.||+.+|.++..-|+-+.+|++.+|++|+.|.
T Consensus 489 ~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTKGn 568 (1013)
T KOG2012|consen 489 PKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTKGN 568 (1013)
T ss_pred hHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCccc
Confidence 999999999998887542 3678899999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCce
Q 013384 200 LTVYNYNGGPCY 211 (444)
Q Consensus 200 l~~~~~~~~~C~ 211 (444)
.+++.|.-+--|
T Consensus 569 tQVvvPhlTEsY 580 (1013)
T KOG2012|consen 569 TQVVVPHLTESY 580 (1013)
T ss_pred eeEEeccccccc
Confidence 999998666665
No 53
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.81 E-value=8.2e-20 Score=149.35 Aligned_cols=93 Identities=18% Similarity=0.269 Sum_probs=78.8
Q ss_pred cCHHHHHHHHhcC-CCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCCCh
Q 013384 328 ISSKEYKEKVVNG-EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGN 406 (444)
Q Consensus 328 Is~~el~~~l~~~-~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~G~ 406 (444)
||++|+.+++.++ +++++||||++.||..+|||||+|+|+..+......+.. .++++||+||.+|.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~~~~~~-------------~~~~~iv~~c~~G~ 67 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQETDHFAP-------------VRGARIVLADDDGV 67 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHHHHhcc-------------cCCCeEEEECCCCC
Confidence 6889999999875 357899999999999999999999999876543322211 12478999999999
Q ss_pred hHHHHHHHHHHcCCCCEEEccccHHHHh
Q 013384 407 DSQRAVQALHKLGFTSARDIIGGLESWA 434 (444)
Q Consensus 407 ~S~~aa~~L~~~G~~~v~~l~GG~~aW~ 434 (444)
+|..++..|+.+||+ |+.+.||+.+|.
T Consensus 68 rs~~aa~~L~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 68 RADMTASWLAQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred hHHHHHHHHHHcCCE-EEEecCcHHHhc
Confidence 999999999999998 999999999996
No 54
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.80 E-value=7.9e-20 Score=150.82 Aligned_cols=98 Identities=16% Similarity=0.382 Sum_probs=80.3
Q ss_pred cCHHHHHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhhh-hhhHHHhhhhhhhcCCCCCCCCeEEEEcCCCh
Q 013384 328 ISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRL-PEISSAMKEKEEHRGSNASSGSNLYVVCRRGN 406 (444)
Q Consensus 328 Is~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~-~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~G~ 406 (444)
|+++|+.++++++++.+|||||++.||+.+|||||+|+|+..+...+ ....+.... .+++++|||||++|.
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~--------~~~~~~ivv~C~~G~ 72 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDFLEIEEDILDQ--------LPDDQEVTVICAKEG 72 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHHHHhhHHHHhh--------CCCCCeEEEEcCCCC
Confidence 68899999998766789999999999999999999999998765432 000111111 123589999999999
Q ss_pred hHHHHHHHHHHcCCCCEEEccccHHHHh
Q 013384 407 DSQRAVQALHKLGFTSARDIIGGLESWA 434 (444)
Q Consensus 407 ~S~~aa~~L~~~G~~~v~~l~GG~~aW~ 434 (444)
+|..++..|++.||+ ++++.||+.+|.
T Consensus 73 rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 73 SSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred cHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 999999999999998 999999999996
No 55
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.8e-19 Score=150.23 Aligned_cols=115 Identities=21% Similarity=0.339 Sum_probs=89.5
Q ss_pred CCCCccCHHHHHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEc
Q 013384 323 SADSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVC 402 (444)
Q Consensus 323 ~~~~~Is~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C 402 (444)
+...++++++++++++.+ ++++||||+++||.++|+|.+||||+.........-...+...- .......++.|||+|
T Consensus 20 ~~~~sv~~~qvk~L~~~~-~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqv--g~~kp~~d~eiIf~C 96 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQHP-DVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQV--GSSKPPHDKEIIFGC 96 (136)
T ss_pred CCcEEEEHHHHHHHhcCC-CEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHh--cccCCCCCCcEEEEe
Confidence 455789999999999875 48999999999999999999999999654433211111111111 111224467999999
Q ss_pred CCChhHHHHHHHHHHcCCCCEEEccccHHHHhhCcCCC
Q 013384 403 RRGNDSQRAVQALHKLGFTSARDIIGGLESWANDVDPS 440 (444)
Q Consensus 403 ~~G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~~p~ 440 (444)
++|.||..|...|...||+||.+|.|||.+|.+.+.|.
T Consensus 97 ~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~ 134 (136)
T KOG1530|consen 97 ASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPK 134 (136)
T ss_pred ccCcchhHHHHHHHHcCcccccccCccHHHHHHccCCC
Confidence 99999999999999999999999999999999886553
No 56
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.79 E-value=3.3e-19 Score=147.38 Aligned_cols=99 Identities=29% Similarity=0.595 Sum_probs=84.2
Q ss_pred ccCHHHHHHHHhcC-CCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCCC
Q 013384 327 RISSKEYKEKVVNG-EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRG 405 (444)
Q Consensus 327 ~Is~~el~~~l~~~-~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~G 405 (444)
.|+++++.+++.++ .+.++||||++.||..+|||||+|+|+..+.+....+... +++++||+||++|
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~~~~~~~~------------~~~~~vv~~c~~g 68 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPERSKELDSD------------NPDKDIVVLCHHG 68 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHHHHHHhccc------------CCCCeEEEEeCCC
Confidence 37899999999874 4579999999999999999999999998776544333221 2358999999999
Q ss_pred hhHHHHHHHHHHcCCCCEEEccccHHHHhhCc
Q 013384 406 NDSQRAVQALHKLGFTSARDIIGGLESWANDV 437 (444)
Q Consensus 406 ~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~ 437 (444)
.+|..++..|.+.||++|+.+.||+.+|....
T Consensus 69 ~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~~ 100 (101)
T cd01528 69 GRSMQVAQWLLRQGFENVYNLQGGIDAWSLEV 100 (101)
T ss_pred chHHHHHHHHHHcCCccEEEecCCHHHHhhhc
Confidence 99999999999999999999999999998764
No 57
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.79 E-value=3.5e-19 Score=149.15 Aligned_cols=100 Identities=26% Similarity=0.451 Sum_probs=86.5
Q ss_pred CCCccCHHHHHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcC
Q 013384 324 ADSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCR 403 (444)
Q Consensus 324 ~~~~Is~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~ 403 (444)
..+.|+++++.++++++ +.++||||++.+|..+|||||+|+|+..+...+..+ +.+++|+|||.
T Consensus 3 ~~~~is~~el~~~l~~~-~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~~~~~~---------------~~~~~ivv~c~ 66 (108)
T PRK00162 3 QFECINVEQAHQKLQEG-GAVLVDIRDPQSFAMGHAPGAFHLTNDSLGAFMRQA---------------DFDTPVMVMCY 66 (108)
T ss_pred CccccCHHHHHHHHHcC-CCEEEEcCCHHHHhcCCCCCCeECCHHHHHHHHHhc---------------CCCCCEEEEeC
Confidence 45789999999998653 478999999999999999999999998765544332 22579999999
Q ss_pred CChhHHHHHHHHHHcCCCCEEEccccHHHHhhCcCC
Q 013384 404 RGNDSQRAVQALHKLGFTSARDIIGGLESWANDVDP 439 (444)
Q Consensus 404 ~G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~~p 439 (444)
+|.+|..++..|+..||++|+++.||+.+|...+.|
T Consensus 67 ~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~ 102 (108)
T PRK00162 67 HGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPA 102 (108)
T ss_pred CCCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCC
Confidence 999999999999999999999999999999988765
No 58
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.78 E-value=4.3e-19 Score=146.08 Aligned_cols=97 Identities=27% Similarity=0.437 Sum_probs=83.5
Q ss_pred CccCHHHHHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCCC
Q 013384 326 SRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRG 405 (444)
Q Consensus 326 ~~Is~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~G 405 (444)
.+|+++|+.++++++ .+|||||++++|..+|||||+|+|+..+...... .+++++||+||++|
T Consensus 2 ~~i~~~el~~~~~~~--~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~~~---------------~~~~~~iv~~c~~g 64 (99)
T cd01527 2 TTISPNDACELLAQG--AVLVDIREPDEYLRERIPGARLVPLSQLESEGLP---------------LVGANAIIFHCRSG 64 (99)
T ss_pred CccCHHHHHHHHHCC--CEEEECCCHHHHHhCcCCCCEECChhHhcccccC---------------CCCCCcEEEEeCCC
Confidence 468999999988764 7999999999999999999999999877542111 12358999999999
Q ss_pred hhHHHHHHHHHHcCCCCEEEccccHHHHhhCcCC
Q 013384 406 NDSQRAVQALHKLGFTSARDIIGGLESWANDVDP 439 (444)
Q Consensus 406 ~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~~p 439 (444)
.+|..++..|++.||.+|+++.||+.+|...+.|
T Consensus 65 ~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~ 98 (99)
T cd01527 65 MRTQQNAERLAAISAGEAYVLEGGLDAWKAAGLP 98 (99)
T ss_pred chHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCC
Confidence 9999999999999999999999999999987554
No 59
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.78 E-value=5.2e-19 Score=144.45 Aligned_cols=93 Identities=34% Similarity=0.621 Sum_probs=81.3
Q ss_pred ccCHHHHHHHHhcCCCcEEEEecCcccccc--cCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCC
Q 013384 327 RISSKEYKEKVVNGEAHILVDVRPAHHFRI--VSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRR 404 (444)
Q Consensus 327 ~Is~~el~~~l~~~~~~~lIDVR~~~ef~~--ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~ 404 (444)
+|+++++.+++.++.++++||||++.+|.. +|||||+|+|+.++.+....+ +++++|||||++
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~~~~~---------------~~~~~ivv~c~~ 65 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDWLGDL---------------DRDRPVVVYCYH 65 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHHHhhc---------------CCCCCEEEEeCC
Confidence 578999999887655689999999999999 999999999998775543221 235899999999
Q ss_pred ChhHHHHHHHHHHcCCCCEEEccccHHHHh
Q 013384 405 GNDSQRAVQALHKLGFTSARDIIGGLESWA 434 (444)
Q Consensus 405 G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~ 434 (444)
|.+|..+++.|+..||++|+++.||+.+|.
T Consensus 66 g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 66 GNSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred CChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 999999999999999999999999999996
No 60
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=99.77 E-value=3.5e-19 Score=142.07 Aligned_cols=83 Identities=49% Similarity=0.993 Sum_probs=60.8
Q ss_pred CCCCceeecCCCCCCCccCCcccCCCcccchhHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEEEEeeccCCCC
Q 013384 206 NGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRIVKIRGRSSQC 285 (444)
Q Consensus 206 ~~~~C~~C~~~~~~~~~~~~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~~~~~~~~~~~d~~~~~~~~~~~~~r~~~C 285 (444)
+++|||+|+||.. +...++|.+.|++||+++++|++||+|+||+|+|.++++.++++.||+.+.+|+.+++. |+|+|
T Consensus 1 g~~pC~rCl~p~~--~~~~~~C~~~GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~~~~~i~~~-k~~~C 77 (84)
T PF05237_consen 1 GKTPCYRCLFPEP--PESAPTCAEAGVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNMSFRSIRIK-KNPDC 77 (84)
T ss_dssp -T---HHHHHTTS--S--TTSSSTS-B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTTEEEEEE-----TT-
T ss_pred CCCceehhcCCCC--CccCCCccccccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCCeEEEEecC-CCccC
Confidence 4689999999998 55668999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CccCCC
Q 013384 286 EACGEN 291 (444)
Q Consensus 286 ~~Cg~~ 291 (444)
|+||.+
T Consensus 78 ~~C~~~ 83 (84)
T PF05237_consen 78 PVCGPK 83 (84)
T ss_dssp TTT---
T ss_pred cCcCcC
Confidence 999974
No 61
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.76 E-value=1.9e-18 Score=143.79 Aligned_cols=101 Identities=28% Similarity=0.439 Sum_probs=80.8
Q ss_pred CHHHHHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhhh----hhhHHHhhhhhhhcCCCCCCCCeEEEEcCC
Q 013384 329 SSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRL----PEISSAMKEKEEHRGSNASSGSNLYVVCRR 404 (444)
Q Consensus 329 s~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~----~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~ 404 (444)
|++++.++++.+++.+|||||++.+|..||||||+|+|+..+.+.. +++.+.+.. ...+++++|||||++
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ivv~c~~ 75 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDALALSEEEFEKKYGF------PKPSKDKELIFYCKA 75 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhhCCCHHHHHHHhcc------cCCCCCCeEEEECCC
Confidence 6788888876235689999999999999999999999998865421 122222211 122456899999999
Q ss_pred ChhHHHHHHHHHHcCCCCEEEccccHHHHhh
Q 013384 405 GNDSQRAVQALHKLGFTSARDIIGGLESWAN 435 (444)
Q Consensus 405 G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~ 435 (444)
|.+|..+++.|+.+||++|+.+.||+.+|.+
T Consensus 76 g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 76 GVRSKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred cHHHHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 9999999999999999999999999999963
No 62
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.76 E-value=1.4e-18 Score=144.39 Aligned_cols=98 Identities=22% Similarity=0.300 Sum_probs=79.7
Q ss_pred cCHHHHHHHHhcC-CCcEEEEecCcccccccCCCCceecCchhhhhh---hhhhH--HHhhhhhhhcCCCCCCCCeEEEE
Q 013384 328 ISSKEYKEKVVNG-EAHILVDVRPAHHFRIVSLPNSINIPLSDLESR---LPEIS--SAMKEKEEHRGSNASSGSNLYVV 401 (444)
Q Consensus 328 Is~~el~~~l~~~-~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~---~~~l~--~~~~~~~~~~~~~~~~~~~Ivv~ 401 (444)
||++|+++++.++ ++++|||||++.+|..+|||||+|+|+..+... +..++ ..+.. ..+++||+|
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~---------~~~~~vv~~ 71 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLPTVPRLEN---------YKGKIIVIV 71 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccccccccchHHHHh---------hcCCeEEEE
Confidence 6899999999763 367999999999999999999999999876421 21221 11111 124799999
Q ss_pred cCCChhHHHHHHHHHHcCCCCEEEccccHHHHh
Q 013384 402 CRRGNDSQRAVQALHKLGFTSARDIIGGLESWA 434 (444)
Q Consensus 402 C~~G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~ 434 (444)
|.+|.+|..+++.|+.+||++|+++.||+.+|+
T Consensus 72 c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 72 SHSHKHAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred eCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 999999999999999999999999999999995
No 63
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.1e-18 Score=169.84 Aligned_cols=183 Identities=24% Similarity=0.308 Sum_probs=141.3
Q ss_pred HHHHhhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc------------
Q 013384 68 PDMIYRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR------------ 135 (444)
Q Consensus 68 ~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R------------ 135 (444)
.+...|||||+|+ ||..||..|..++|+++|||++||+++++|+..|||.|++||+..|+.++++.
T Consensus 4 ~~~~~kYDRQlRl--wge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~Gks 81 (523)
T KOG2016|consen 4 SEPKTKYDRQLRL--WGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKS 81 (523)
T ss_pred cchhhHHHHHHHH--HHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchh
Confidence 3457999999999 99999999999999999999999999999999999999999999999997765
Q ss_pred -----------ccCcceEEEEeecCC--cccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEEE
Q 013384 136 -----------INSTVHIIEHREALR--TSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTV 202 (444)
Q Consensus 136 -----------lnp~~~v~~~~~~~~--~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~ 202 (444)
+||.|.-.......+ -.+...+|.++++|+.+--+..+...+.++|+..++|++.+..+|+.|.+++
T Consensus 82 rA~a~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~iRI 161 (523)
T KOG2016|consen 82 RAEATLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGTIRI 161 (523)
T ss_pred HHHHHHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEEEEE
Confidence 899987766554433 2456788999999997777777888999999999999999999999999987
Q ss_pred EeC--------CCCCceeecCCCCCC----Ccc--CCcccCCCcccchhHHHHHHHHHHHHHHH
Q 013384 203 YNY--------NGGPCYRCLFPTPPP----TTA--CQRCADSGVLGVVPGIIGCLQALEAIKVA 252 (444)
Q Consensus 203 ~~~--------~~~~C~~C~~~~~~~----~~~--~~~c~~~~~~~~~~~i~g~l~a~e~lk~l 252 (444)
... ++.+-++-...+|.| .-. .-+-.+...+..+|.++-.+-+.+.+.--
T Consensus 162 ~ikEH~iieshPD~~~~DLRL~nPwpeLi~~v~s~dLd~m~~a~~shiPyivll~K~l~~w~~~ 225 (523)
T KOG2016|consen 162 SIKEHTIIESHPDNPLDDLRLDNPWPELIEYVDSTDLDVMDPAAHSHIPYIVLLVKYLEKWAKQ 225 (523)
T ss_pred EeeeccccccCCCCcccccccCCCcHHHHHHHhhcCccccchhhhcCCCcHHHHHHHHHHHHHh
Confidence 653 222222222222211 100 11334456677888887777766665544
No 64
>PLN02160 thiosulfate sulfurtransferase
Probab=99.75 E-value=3.7e-18 Score=148.90 Aligned_cols=108 Identities=22% Similarity=0.368 Sum_probs=84.6
Q ss_pred CCCccCHHHHHHHHhcCCCcEEEEecCcccccccCCCCc--eecCchhhhhh--h--hhhHHHhhhhhhhcCCCCCCCCe
Q 013384 324 ADSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNS--INIPLSDLESR--L--PEISSAMKEKEEHRGSNASSGSN 397 (444)
Q Consensus 324 ~~~~Is~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgA--iniP~~~l~~~--~--~~l~~~~~~~~~~~~~~~~~~~~ 397 (444)
....|+++++.++++++ .+|||||++.||..|||||| +|+|+..+... + .++...+... .+++++
T Consensus 13 ~~~~i~~~e~~~~~~~~--~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~ 83 (136)
T PLN02160 13 EVVSVDVSQAKTLLQSG--HQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSL-------LNPADD 83 (136)
T ss_pred eeeEeCHHHHHHHHhCC--CEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhc-------cCCCCc
Confidence 35679999999998754 58999999999999999999 89998543210 1 1111111111 134589
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCCEEEccccHHHHhhCcCCC
Q 013384 398 LYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWANDVDPS 440 (444)
Q Consensus 398 Ivv~C~~G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~~p~ 440 (444)
|||||++|.||..|+..|...||++|++|.|||.+|.+.+.|.
T Consensus 84 IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~ 126 (136)
T PLN02160 84 ILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPI 126 (136)
T ss_pred EEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCc
Confidence 9999999999999999999999999999999999999997763
No 65
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.74 E-value=3.7e-18 Score=138.08 Aligned_cols=89 Identities=27% Similarity=0.503 Sum_probs=76.4
Q ss_pred cCHHHHHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCCChh
Q 013384 328 ISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGND 407 (444)
Q Consensus 328 Is~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~G~~ 407 (444)
++++|+.+++. ++.++||+|++++|..+|||||+|+|+..+......+ +++++||+||++|.+
T Consensus 1 ~~~~e~~~~~~--~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~~~~~---------------~~~~~vvl~c~~g~~ 63 (90)
T cd01524 1 VQWHELDNYRA--DGVTLIDVRTPQEFEKGHIKGAINIPLDELRDRLNEL---------------PKDKEIIVYCAVGLR 63 (90)
T ss_pred CCHHHHHHHhc--CCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHHHHhc---------------CCCCcEEEEcCCChh
Confidence 46889999884 4578999999999999999999999998765433221 235799999999999
Q ss_pred HHHHHHHHHHcCCCCEEEccccHHHHh
Q 013384 408 SQRAVQALHKLGFTSARDIIGGLESWA 434 (444)
Q Consensus 408 S~~aa~~L~~~G~~~v~~l~GG~~aW~ 434 (444)
+..+++.|++.|| +++++.||+.+|+
T Consensus 64 a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 64 GYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred HHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 9999999999999 9999999999996
No 66
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.74 E-value=2.9e-18 Score=141.81 Aligned_cols=101 Identities=22% Similarity=0.367 Sum_probs=79.9
Q ss_pred cCHHHHHHHHhcCCCcEEEEecCcccc-cccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCCCh
Q 013384 328 ISSKEYKEKVVNGEAHILVDVRPAHHF-RIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGN 406 (444)
Q Consensus 328 Is~~el~~~l~~~~~~~lIDVR~~~ef-~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~G~ 406 (444)
|+++++.+++.+ ++.+|||||++.+| ..||||||+|+|+..+....+.... +.. ...+++++|||||.+|.
T Consensus 1 is~~el~~~~~~-~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~~~~~-~~~------~~~~~~~~ivv~c~~g~ 72 (103)
T cd01447 1 LSPEDARALLGS-PGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDSP-YHK------PAFAEDKPFVFYCASGW 72 (103)
T ss_pred CCHHHHHHHHhC-CCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcCcccc-ccc------cCCCCCCeEEEEcCCCC
Confidence 678999998875 45899999999998 5799999999998776432221100 000 01245689999999999
Q ss_pred hHHHHHHHHHHcCCCCEEEccccHHHHhhC
Q 013384 407 DSQRAVQALHKLGFTSARDIIGGLESWAND 436 (444)
Q Consensus 407 ~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~ 436 (444)
+|..+++.|+.+||++|+.+.||+.+|...
T Consensus 73 ~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~ 102 (103)
T cd01447 73 RSALAGKTLQDMGLKPVYNIEGGFKDWKEA 102 (103)
T ss_pred cHHHHHHHHHHcChHHhEeecCcHHHHhhc
Confidence 999999999999999999999999999765
No 67
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.74 E-value=6.4e-18 Score=142.03 Aligned_cols=99 Identities=25% Similarity=0.451 Sum_probs=82.5
Q ss_pred CccCHHHHHHHHhcC-CCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCC
Q 013384 326 SRISSKEYKEKVVNG-EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRR 404 (444)
Q Consensus 326 ~~Is~~el~~~l~~~-~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~ 404 (444)
..|+++|+.+++.++ ++.+|||||++.+|..+|||||+|+|+..+.... +. ..+++++|||||++
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~~--~~------------~i~~~~~vvvyc~~ 73 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREICENA--TA------------KLDKEKLFVVYCDG 73 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhHh--hh------------cCCCCCeEEEEECC
Confidence 568999999999865 5689999999999999999999999998764211 11 01346899999998
Q ss_pred C--hhHHHHHHHHHHcCCCCEEEccccHHHHhhCcCC
Q 013384 405 G--NDSQRAVQALHKLGFTSARDIIGGLESWANDVDP 439 (444)
Q Consensus 405 G--~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~~p 439 (444)
| .+|..+++.|+++||+ ++++.||+.+|...+.|
T Consensus 74 g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~ 109 (110)
T cd01521 74 PGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYA 109 (110)
T ss_pred CCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCC
Confidence 7 4899999999999995 99999999999988654
No 68
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.74 E-value=5.1e-18 Score=144.30 Aligned_cols=102 Identities=22% Similarity=0.414 Sum_probs=82.4
Q ss_pred cCHHHHHHHHhcCCCcEEEEecCccccc-ccCCCCceecCchhhhhhh--hhhHHHhhhhhhhcCCCCCCCCeEEEEcCC
Q 013384 328 ISSKEYKEKVVNGEAHILVDVRPAHHFR-IVSLPNSINIPLSDLESRL--PEISSAMKEKEEHRGSNASSGSNLYVVCRR 404 (444)
Q Consensus 328 Is~~el~~~l~~~~~~~lIDVR~~~ef~-~ghIpgAiniP~~~l~~~~--~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~ 404 (444)
||++++.++++++++.++||||++.||+ .+|||||+|+|+..+.... ..+...+... .+++++||+||++
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~-------~~~~~~ivv~C~~ 73 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAELEEK-------VGKDRPVLLLCRS 73 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhccccccCHHHHHHHHhh-------CCCCCeEEEEcCC
Confidence 6899999999876678999999999999 9999999999998765321 1111111111 0346899999999
Q ss_pred ChhHHHHHHHHHHcCCCCEEEccccHHHHhhC
Q 013384 405 GNDSQRAVQALHKLGFTSARDIIGGLESWAND 436 (444)
Q Consensus 405 G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~ 436 (444)
|.+|..+++.|+++||++++.+.||+.+|...
T Consensus 74 G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 74 GNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred CccHHHHHHHHHHCCCCeEEECcCceecCCCC
Confidence 99999999999999999999999999999543
No 69
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.74 E-value=1.1e-17 Score=144.53 Aligned_cols=102 Identities=25% Similarity=0.376 Sum_probs=77.9
Q ss_pred cCHHHHHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhhh-----------------------hhhHHHhhhh
Q 013384 328 ISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRL-----------------------PEISSAMKEK 384 (444)
Q Consensus 328 Is~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~-----------------------~~l~~~~~~~ 384 (444)
||++|+.+++.+ +.+|||||++.||..||||||+|||+..+.... ..+...+...
T Consensus 1 ~s~~el~~~l~~--~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (128)
T cd01520 1 ITAEDLLALRKA--DGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEA 78 (128)
T ss_pred CCHHHHHHHHhc--CCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHH
Confidence 689999998873 579999999999999999999999996442210 0111111110
Q ss_pred hhhcCCCCCCCCeEEEEcC-CChhHHHHHHHHHHcCCCCEEEccccHHHHhh
Q 013384 385 EEHRGSNASSGSNLYVVCR-RGNDSQRAVQALHKLGFTSARDIIGGLESWAN 435 (444)
Q Consensus 385 ~~~~~~~~~~~~~Ivv~C~-~G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~ 435 (444)
. ....+++++|||||. +|.+|..+++.|+.+|| +|+++.||+.+|+.
T Consensus 79 ~---~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 79 W---EARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred H---HhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 0 012356789999997 68999999999999999 69999999999975
No 70
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.73 E-value=7.7e-18 Score=144.01 Aligned_cols=100 Identities=16% Similarity=0.272 Sum_probs=80.3
Q ss_pred CccCHHHHHHHHhcC-----CCcEEEEecCcccccccCCCCceecCch-hhhhhhhhhHHHhhhhhhhcCCCCCCCCeEE
Q 013384 326 SRISSKEYKEKVVNG-----EAHILVDVRPAHHFRIVSLPNSINIPLS-DLESRLPEISSAMKEKEEHRGSNASSGSNLY 399 (444)
Q Consensus 326 ~~Is~~el~~~l~~~-----~~~~lIDVR~~~ef~~ghIpgAiniP~~-~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Iv 399 (444)
+.||++++.+++.++ ++++|||||++.||+.||||||+|||+. .+...+...... ...+++++||
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~~~~~~~---------~~~~~~~~vv 72 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFFLDKPGV---------ASKKKRRVLI 72 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHHHHhhcc---------cccCCCCEEE
Confidence 469999999999764 4689999999999999999999999996 454322111100 0124468999
Q ss_pred EEcC-CChhHHHHHHHHHHc------------CCCCEEEccccHHHHh
Q 013384 400 VVCR-RGNDSQRAVQALHKL------------GFTSARDIIGGLESWA 434 (444)
Q Consensus 400 v~C~-~G~~S~~aa~~L~~~------------G~~~v~~l~GG~~aW~ 434 (444)
|||+ +|.||..|++.|++. ||.+|++|.||+.+|.
T Consensus 73 ~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 73 FHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred EECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 9997 999999999999985 9999999999999984
No 71
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.72 E-value=2.9e-17 Score=147.43 Aligned_cols=112 Identities=16% Similarity=0.277 Sum_probs=83.8
Q ss_pred CCCCCccCHHHHHHHHhcCCCcEEEEecCcc----cccc---------cCCCCceecCchh---hhhhh-hhhHHHhhhh
Q 013384 322 LSADSRISSKEYKEKVVNGEAHILVDVRPAH----HFRI---------VSLPNSINIPLSD---LESRL-PEISSAMKEK 384 (444)
Q Consensus 322 l~~~~~Is~~el~~~l~~~~~~~lIDVR~~~----ef~~---------ghIpgAiniP~~~---l~~~~-~~l~~~~~~~ 384 (444)
+.....|+++|+.+++.++ +.+|||||++. +|.. +|||||+|+|+.. +.... ..+...+...
T Consensus 32 ~~~~~~vs~~el~~~l~~~-~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~~~~~~~~~~~l~~~ 110 (162)
T TIGR03865 32 LKGARVLDTEAAQALLARG-PVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLAPAWQAYFRRGLERA 110 (162)
T ss_pred cCCccccCHHHHHHHHhCC-CcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCCCchhHHHHHHHHHh
Confidence 3557889999999999764 57899999876 4543 4999999999632 22211 1122222111
Q ss_pred hhhcCCCCCCCCeEEEEcCCCh-hHHHHHHHHHHcCCCCEEEccccHHHHhhCcCC
Q 013384 385 EEHRGSNASSGSNLYVVCRRGN-DSQRAVQALHKLGFTSARDIIGGLESWANDVDP 439 (444)
Q Consensus 385 ~~~~~~~~~~~~~Ivv~C~~G~-~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~~p 439 (444)
...+++++||+||++|. +|..+++.|+.+||++|++|+||+.+|+.++.|
T Consensus 111 -----~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~P 161 (162)
T TIGR03865 111 -----TGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLP 161 (162)
T ss_pred -----cCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCC
Confidence 11245789999999997 899999999999999999999999999999765
No 72
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.3e-17 Score=171.62 Aligned_cols=124 Identities=28% Similarity=0.431 Sum_probs=114.4
Q ss_pred hhhhccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc----------------
Q 013384 72 YRYSRHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR---------------- 135 (444)
Q Consensus 72 ~ry~Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R---------------- 135 (444)
.-||||+.+ +|.++.++|..++|+|.|+||+|.+|||||.++||++++|.|...+..++|.-
T Consensus 18 ~LYSRQLYV--lG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~a 95 (1013)
T KOG2012|consen 18 SLYSRQLYV--LGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAEA 95 (1013)
T ss_pred hhhhhhhhh--ccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHHH
Confidence 789999999 99999999999999999999999999999999999999999999999998875
Q ss_pred -------ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEE
Q 013384 136 -------INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLT 201 (444)
Q Consensus 136 -------lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~ 201 (444)
+|+.|.|..+...++ .+++++|++|+.+--..+....||++|+++++.+|.+-+-|..|++.
T Consensus 96 s~~~LaeLN~yV~V~v~t~~~~----~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLfg~lF 164 (1013)
T KOG2012|consen 96 SVEKLAELNNYVPVVVLTGPLT----EEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLFGQLF 164 (1013)
T ss_pred HHHHHHHhhcceeeEEecCccc----HHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhhhhhh
Confidence 899999999887765 67889999999776677888899999999999999998888887764
No 73
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.72 E-value=1.9e-17 Score=135.57 Aligned_cols=86 Identities=23% Similarity=0.358 Sum_probs=71.1
Q ss_pred CCCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHHHHHHcC
Q 013384 340 GEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQALHKLG 419 (444)
Q Consensus 340 ~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~G~~S~~aa~~L~~~G 419 (444)
+++.+|||||++.+|..+|||||+|+|+..+......+.. +.. ..++++|||||.+|.+|..+++.|+..|
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~~~~~~~-~~~--------~~~~~~ivv~c~~g~~s~~~~~~l~~~G 80 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALVLRSQELQA-LEA--------PGRATRYVLTCDGSLLARFAAQELLALG 80 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCCHHHHHH-hhc--------CCCCCCEEEEeCChHHHHHHHHHHHHcC
Confidence 3568999999999999999999999999876543333322 111 1346899999999999999999999999
Q ss_pred CCCEEEccccHHHHh
Q 013384 420 FTSARDIIGGLESWA 434 (444)
Q Consensus 420 ~~~v~~l~GG~~aW~ 434 (444)
|++|+++.||+.+|.
T Consensus 81 ~~~v~~l~GG~~~W~ 95 (96)
T cd01529 81 GKPVALLDGGTSAWV 95 (96)
T ss_pred CCCEEEeCCCHHHhc
Confidence 999999999999996
No 74
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.71 E-value=3.6e-17 Score=139.80 Aligned_cols=102 Identities=19% Similarity=0.245 Sum_probs=83.0
Q ss_pred cCHHHHHHHHhcCCCcEEEEecCc-------ccccccCCCCceecCchhhhhhh----------hhhHHHhhhhhhhcCC
Q 013384 328 ISSKEYKEKVVNGEAHILVDVRPA-------HHFRIVSLPNSINIPLSDLESRL----------PEISSAMKEKEEHRGS 390 (444)
Q Consensus 328 Is~~el~~~l~~~~~~~lIDVR~~-------~ef~~ghIpgAiniP~~~l~~~~----------~~l~~~~~~~~~~~~~ 390 (444)
|+++++.+++.+ ++++|||+|++ .+|..+|||||+|+|+..+.... +++.+.+.. .
T Consensus 2 i~~~~l~~~l~~-~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 74 (122)
T cd01448 2 VSPDWLAEHLDD-PDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGS------L 74 (122)
T ss_pred cCHHHHHHHhCC-CCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHH------c
Confidence 689999999876 45899999999 99999999999999998765321 223332221 1
Q ss_pred CCCCCCeEEEEcCC-ChhHHHHHHHHHHcCCCCEEEccccHHHHhhC
Q 013384 391 NASSGSNLYVVCRR-GNDSQRAVQALHKLGFTSARDIIGGLESWAND 436 (444)
Q Consensus 391 ~~~~~~~Ivv~C~~-G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~ 436 (444)
+.+++++|||||++ |.+|..+++.|+.+||++|++|.||+.+|...
T Consensus 75 ~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~ 121 (122)
T cd01448 75 GISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAE 121 (122)
T ss_pred CCCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhC
Confidence 23567899999999 58999999999999999999999999999875
No 75
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.71 E-value=2.8e-17 Score=139.58 Aligned_cols=100 Identities=23% Similarity=0.385 Sum_probs=80.6
Q ss_pred cCHHHHHHHHhcCCCcEEEEecCcccccc-----------cCCCCceecCchhhhhh------hhhhHHHhhhhhhhcCC
Q 013384 328 ISSKEYKEKVVNGEAHILVDVRPAHHFRI-----------VSLPNSINIPLSDLESR------LPEISSAMKEKEEHRGS 390 (444)
Q Consensus 328 Is~~el~~~l~~~~~~~lIDVR~~~ef~~-----------ghIpgAiniP~~~l~~~------~~~l~~~~~~~~~~~~~ 390 (444)
+|++++.+++++ ++.+|||||++.+|.. ||||||+|+|+..+... .+++...+...
T Consensus 1 ~s~~~l~~~l~~-~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~------ 73 (118)
T cd01449 1 VTAEEVLANLDS-GDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAAL------ 73 (118)
T ss_pred CCHHHHHHhcCC-CCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHc------
Confidence 578899988865 4589999999999987 99999999999876532 12333322221
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCCCEEEccccHHHHh
Q 013384 391 NASSGSNLYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWA 434 (444)
Q Consensus 391 ~~~~~~~Ivv~C~~G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~ 434 (444)
..+++++||+||++|.+|..+++.|+.+||++++.|.||+.+|.
T Consensus 74 ~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 74 GITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred CCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence 22456899999999999999999999999999999999999996
No 76
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.71 E-value=3.7e-17 Score=157.15 Aligned_cols=107 Identities=12% Similarity=0.316 Sum_probs=87.5
Q ss_pred CCCCccCHHHHHHHHhcC-----CCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCe
Q 013384 323 SADSRISSKEYKEKVVNG-----EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSN 397 (444)
Q Consensus 323 ~~~~~Is~~el~~~l~~~-----~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 397 (444)
...+.|+++++.+++.++ ++.+|||||++.||+.||||||+|+|+.++.+....+...... .++++
T Consensus 107 ~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~~~~~l~~~~~~---------~kdk~ 177 (257)
T PRK05320 107 GRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEFPEALAAHRAD---------LAGKT 177 (257)
T ss_pred CcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhhhHHHHHhhhhh---------cCCCe
Confidence 345789999999988763 3479999999999999999999999998876543333322111 13589
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCCCEEEccccHHHHhhCcC
Q 013384 398 LYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWANDVD 438 (444)
Q Consensus 398 Ivv~C~~G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~~ 438 (444)
|++||++|.||..|+.+|++.||++|+.+.||+.+|.+...
T Consensus 178 IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~~~ 218 (257)
T PRK05320 178 VVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEEVG 218 (257)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHhCC
Confidence 99999999999999999999999999999999999987643
No 77
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.70 E-value=7.3e-17 Score=136.21 Aligned_cols=101 Identities=19% Similarity=0.308 Sum_probs=82.3
Q ss_pred CccCHHHHHHHHhcC-CCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcC-
Q 013384 326 SRISSKEYKEKVVNG-EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCR- 403 (444)
Q Consensus 326 ~~Is~~el~~~l~~~-~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~- 403 (444)
+.|+++++.+++..+ ++.++||||++ ||..+|||||+|+|+..+...+..+.+... .+++++|||||.
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~~~~~~~~~---------~~~~~~iv~yC~~ 71 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQLNQLVQLLS---------GSKKDTVVFHCAL 71 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCHHHHHHHHh---------cCCCCeEEEEeec
Confidence 568999999998765 45789999999 999999999999999987765555543210 133579999998
Q ss_pred CChhHHHHHHHHHH--------cCCCCEEEccccHHHHhhC
Q 013384 404 RGNDSQRAVQALHK--------LGFTSARDIIGGLESWAND 436 (444)
Q Consensus 404 ~G~~S~~aa~~L~~--------~G~~~v~~l~GG~~aW~~~ 436 (444)
+|.+|..++..|.+ .||.+|+.+.||+.+|...
T Consensus 72 ~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 72 SQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred CCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 67899999888754 4999999999999999864
No 78
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.70 E-value=4.9e-17 Score=136.11 Aligned_cols=103 Identities=29% Similarity=0.542 Sum_probs=77.9
Q ss_pred CHHHHHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhh-----hhhhHHHhhhhhhhcCCCCCCCCeEEEEcC
Q 013384 329 SSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESR-----LPEISSAMKEKEEHRGSNASSGSNLYVVCR 403 (444)
Q Consensus 329 s~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~-----~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~ 403 (444)
|++|+++++ .+++++|||||++.+|..+|||||+|+|+..+... ...+........ ...+.+++||+||.
T Consensus 1 s~~el~~~l-~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~iv~yc~ 75 (113)
T PF00581_consen 1 SPEELKEML-ENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELG----KKIDKDKDIVFYCS 75 (113)
T ss_dssp -HHHHHHHH-TTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHT----HGSTTTSEEEEEES
T ss_pred CHHHHHhhh-hCCCeEEEEeCCHHHHHcCCCCCCcccccccccccccccccccccccccccc----ccccccccceeeee
Confidence 689999999 55679999999999999999999999999654110 111111111111 11244679999999
Q ss_pred CChhHHHHHHH-----HHHcCCCCEEEccccHHHHhhC
Q 013384 404 RGNDSQRAVQA-----LHKLGFTSARDIIGGLESWAND 436 (444)
Q Consensus 404 ~G~~S~~aa~~-----L~~~G~~~v~~l~GG~~aW~~~ 436 (444)
.|.++..++.. |+.+||++|++|.||+.+|.++
T Consensus 76 ~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 76 SGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 99988888777 8889999999999999999863
No 79
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.69 E-value=7.9e-17 Score=136.04 Aligned_cols=99 Identities=20% Similarity=0.338 Sum_probs=77.8
Q ss_pred CccCHHHHHHHHhcC-----CCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEE
Q 013384 326 SRISSKEYKEKVVNG-----EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYV 400 (444)
Q Consensus 326 ~~Is~~el~~~l~~~-----~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv 400 (444)
..|+++|+++++.++ ++.+|||||++ ||..+|||||+|+|+..+...+.++.+.+.. ...++||+
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~~~~~~~~~~---------~~~~~iv~ 71 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTLPQVYALFSL---------AGVKLAIF 71 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHHHHHHHHHhhh---------cCCCEEEE
Confidence 468999999999875 46889999999 9999999999999998876654444332211 12368999
Q ss_pred EcCC-ChhHHHHHHHHHH----cCC--CCEEEccccHHHHh
Q 013384 401 VCRR-GNDSQRAVQALHK----LGF--TSARDIIGGLESWA 434 (444)
Q Consensus 401 ~C~~-G~~S~~aa~~L~~----~G~--~~v~~l~GG~~aW~ 434 (444)
||.+ |.+|..++..|.. .|| .+++++.||+.+|.
T Consensus 72 ~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 72 YCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred ECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 9996 6788888876554 475 68999999999995
No 80
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.69 E-value=6.9e-17 Score=131.50 Aligned_cols=92 Identities=32% Similarity=0.538 Sum_probs=74.3
Q ss_pred CCcEEEEecCcccccccCCCCceecCchhhhhhhhhh-----HHHhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHHHH
Q 013384 341 EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEI-----SSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQAL 415 (444)
Q Consensus 341 ~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l-----~~~~~~~~~~~~~~~~~~~~Ivv~C~~G~~S~~aa~~L 415 (444)
++.+|||||++.+|..+|||||+|+|+..+....... ...... ....++++|||||.+|.++..+++.|
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~iv~~c~~g~~a~~~~~~l 76 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKR------LGLDKDKPVVVYCRSGNRSAKAAWLL 76 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHH------cCCCCCCeEEEEeCCCcHHHHHHHHH
Confidence 4689999999999999999999999998776542111 111111 12245689999999999999999999
Q ss_pred HHcCCCCEEEccccHHHHhhCcC
Q 013384 416 HKLGFTSARDIIGGLESWANDVD 438 (444)
Q Consensus 416 ~~~G~~~v~~l~GG~~aW~~~~~ 438 (444)
++.||++|++|.||+.+|...+.
T Consensus 77 ~~~G~~~v~~l~GG~~~w~~~~~ 99 (100)
T smart00450 77 RELGFKNVYLLDGGYKEWSAAGP 99 (100)
T ss_pred HHcCCCceEEecCCHHHHHhcCC
Confidence 99999999999999999998754
No 81
>PRK01415 hypothetical protein; Validated
Probab=99.69 E-value=8.2e-17 Score=152.66 Aligned_cols=104 Identities=17% Similarity=0.357 Sum_probs=85.7
Q ss_pred CCccCHHHHHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCC
Q 013384 325 DSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRR 404 (444)
Q Consensus 325 ~~~Is~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~ 404 (444)
...|+++++.+++++ +++++||||++.||+.||||||+|+|+..+.+....+.. ..+ ..++++|++||.+
T Consensus 111 g~~i~p~e~~~ll~~-~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e~~~~~~~-~~~--------~~k~k~Iv~yCtg 180 (247)
T PRK01415 111 GEYIEPKDWDEFITK-QDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQFPAWVQQ-NQE--------LLKGKKIAMVCTG 180 (247)
T ss_pred ccccCHHHHHHHHhC-CCcEEEECCCHHHHhcCCcCCCCCCChHHHhhhHHHHhh-hhh--------hcCCCeEEEECCC
Confidence 467999999999976 568999999999999999999999998876542111111 111 1346899999999
Q ss_pred ChhHHHHHHHHHHcCCCCEEEccccHHHHhhCcC
Q 013384 405 GNDSQRAVQALHKLGFTSARDIIGGLESWANDVD 438 (444)
Q Consensus 405 G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~~ 438 (444)
|.||..|+..|++.||++|+.|.||+.+|.+...
T Consensus 181 GiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~~ 214 (247)
T PRK01415 181 GIRCEKSTSLLKSIGYDEVYHLKGGILQYLEDTQ 214 (247)
T ss_pred ChHHHHHHHHHHHcCCCcEEEechHHHHHHHhcc
Confidence 9999999999999999999999999999998643
No 82
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.68 E-value=7.1e-17 Score=131.22 Aligned_cols=82 Identities=29% Similarity=0.453 Sum_probs=67.6
Q ss_pred CCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCCChh--HHHHHHHHHHc
Q 013384 341 EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGND--SQRAVQALHKL 418 (444)
Q Consensus 341 ~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~G~~--S~~aa~~L~~~ 418 (444)
++.+|||||++.+|..+|||||+|+|+..+... .... ++ +++++|||||.+|++ |..|++.|++.
T Consensus 9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~--~~~~-~~----------~~~~~ivl~c~~G~~~~s~~aa~~L~~~ 75 (92)
T cd01532 9 EEIALIDVREEDPFAQSHPLWAANLPLSRLELD--AWVR-IP----------RRDTPIVVYGEGGGEDLAPRAARRLSEL 75 (92)
T ss_pred CCeEEEECCCHHHHhhCCcccCeeCCHHHHHhh--hHhh-CC----------CCCCeEEEEeCCCCchHHHHHHHHHHHc
Confidence 468999999999999999999999999775421 1111 11 235799999999986 68999999999
Q ss_pred CCCCEEEccccHHHHhh
Q 013384 419 GFTSARDIIGGLESWAN 435 (444)
Q Consensus 419 G~~~v~~l~GG~~aW~~ 435 (444)
||++|+++.||+.+|.+
T Consensus 76 G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 76 GYTDVALLEGGLQGWRA 92 (92)
T ss_pred CccCEEEccCCHHHHcC
Confidence 99999999999999963
No 83
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.67 E-value=1.3e-16 Score=131.77 Aligned_cols=81 Identities=25% Similarity=0.478 Sum_probs=68.2
Q ss_pred CCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHHHHHHcCC
Q 013384 341 EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQALHKLGF 420 (444)
Q Consensus 341 ~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~G~~S~~aa~~L~~~G~ 420 (444)
....+||||+++||..+|||||+|||+.++...+..+.. +.+++|||||++|.+|..++..|+++||
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~l~~~~~-------------~~~~~vvlyC~~G~rS~~aa~~L~~~G~ 83 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKEHIATAVP-------------DKNDTVKLYCNAGRQSGMAKDILLDMGY 83 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHHHHHHHHHHhCC-------------CCCCeEEEEeCCCHHHHHHHHHHHHcCC
Confidence 346799999999999999999999999877654333211 2357999999999999999999999999
Q ss_pred CCEEEccccHHHHhh
Q 013384 421 TSARDIIGGLESWAN 435 (444)
Q Consensus 421 ~~v~~l~GG~~aW~~ 435 (444)
++++++ ||+.+|.-
T Consensus 84 ~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 84 THAENA-GGIKDIAM 97 (101)
T ss_pred CeEEec-CCHHHhhh
Confidence 999985 99999963
No 84
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.67 E-value=1.1e-16 Score=141.22 Aligned_cols=92 Identities=16% Similarity=0.243 Sum_probs=78.4
Q ss_pred HHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHH
Q 013384 333 YKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAV 412 (444)
Q Consensus 333 l~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~G~~S~~aa 412 (444)
+.+++.++.+.+|||||++.+|..+|||||+|+|...+...+..+. ++.+|||||.+|..|..++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~~l~~l~---------------~~~~vVv~c~~g~~a~~aa 66 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQALEKLP---------------AAERYVLTCGSSLLARFAA 66 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHHHHHHHhcC---------------CCCCEEEEeCCChHHHHHH
Confidence 4556666666899999999999999999999999877665443332 1479999999999999999
Q ss_pred HHHHHcCCCCEEEccccHHHHhhCcCC
Q 013384 413 QALHKLGFTSARDIIGGLESWANDVDP 439 (444)
Q Consensus 413 ~~L~~~G~~~v~~l~GG~~aW~~~~~p 439 (444)
+.|+..||++|+++.||+.+|...+.|
T Consensus 67 ~~L~~~G~~~v~~L~GG~~aW~~~g~p 93 (145)
T cd01535 67 ADLAALTVKPVFVLEGGTAAWIAAGLP 93 (145)
T ss_pred HHHHHcCCcCeEEecCcHHHHHHCCCC
Confidence 999999999999999999999998765
No 85
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.1e-16 Score=133.78 Aligned_cols=96 Identities=29% Similarity=0.499 Sum_probs=80.9
Q ss_pred HHHhcCCCcEEEEecCcccccccCCCC-ceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHH
Q 013384 335 EKVVNGEAHILVDVRPAHHFRIVSLPN-SINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQ 413 (444)
Q Consensus 335 ~~l~~~~~~~lIDVR~~~ef~~ghIpg-AiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~G~~S~~aa~ 413 (444)
..+...++.++||||++.||+.+|||+ ++|+|+.++........ . +++++|||||++|++|..|++
T Consensus 13 ~~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~~---~----------~~~~~ivv~C~~G~rS~~aa~ 79 (110)
T COG0607 13 ALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLE---L----------PDDDPIVVYCASGVRSAAAAA 79 (110)
T ss_pred HHhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhcccc---c----------CCCCeEEEEeCCCCChHHHHH
Confidence 334444568999999999999999999 99999998876533332 1 235899999999999999999
Q ss_pred HHHHcCCCCEEEccccHHHHhhCcCCCCCC
Q 013384 414 ALHKLGFTSARDIIGGLESWANDVDPSFPV 443 (444)
Q Consensus 414 ~L~~~G~~~v~~l~GG~~aW~~~~~p~~P~ 443 (444)
.|++.||++++++.||+.+|...+.|..+.
T Consensus 80 ~L~~~G~~~~~~l~gG~~~w~~~~~~~~~~ 109 (110)
T COG0607 80 ALKLAGFTNVYNLDGGIDAWKGAGLPLVRG 109 (110)
T ss_pred HHHHcCCccccccCCcHHHHHhcCCCcccC
Confidence 999999998889999999999998887654
No 86
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.65 E-value=3.4e-16 Score=154.67 Aligned_cols=106 Identities=16% Similarity=0.344 Sum_probs=87.9
Q ss_pred CCCCccCHHHHHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEc
Q 013384 323 SADSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVC 402 (444)
Q Consensus 323 ~~~~~Is~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C 402 (444)
.....|+++++.+++.+ ++++|||||++.||+.||||||+|+|+..+.+..+.+...+ ...++++||+||
T Consensus 109 ~~~~~is~~el~~~l~~-~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~~~~l~~~~---------~~~kdk~IvvyC 178 (314)
T PRK00142 109 NVGTYLKPKEVNELLDD-PDVVFIDMRNDYEYEIGHFENAIEPDIETFREFPPWVEENL---------DPLKDKKVVMYC 178 (314)
T ss_pred cCCcccCHHHHHHHhcC-CCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhhHHHHHHhc---------CCCCcCeEEEEC
Confidence 34567999999998876 46899999999999999999999999988765433332211 113468999999
Q ss_pred CCChhHHHHHHHHHHcCCCCEEEccccHHHHhhCcC
Q 013384 403 RRGNDSQRAVQALHKLGFTSARDIIGGLESWANDVD 438 (444)
Q Consensus 403 ~~G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~~ 438 (444)
.+|.||..|+.+|++.||++|+.|.||+.+|.+...
T Consensus 179 ~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~~~ 214 (314)
T PRK00142 179 TGGIRCEKASAWMKHEGFKEVYQLEGGIITYGEDPE 214 (314)
T ss_pred CCCcHHHHHHHHHHHcCCCcEEEecchHHHHHHhhc
Confidence 999999999999999999999999999999987643
No 87
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.65 E-value=2.5e-16 Score=130.61 Aligned_cols=80 Identities=28% Similarity=0.527 Sum_probs=67.4
Q ss_pred CcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCC
Q 013384 342 AHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQALHKLGFT 421 (444)
Q Consensus 342 ~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~G~~S~~aa~~L~~~G~~ 421 (444)
.-.+||+|++.||..+|||||+|+|+.++...+..+.. +++++||+||++|.+|..++..|.+.||+
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~l~~l~~-------------~~~~~IVlyC~~G~rS~~aa~~L~~~G~~ 86 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAVP-------------DKNDTVKLYCNAGRQSGQAKEILSEMGYT 86 (104)
T ss_pred CCEEEECCCHHHHhcCCCCccEECCHHHHHHHHHhcCC-------------CCCCeEEEEeCCChHHHHHHHHHHHcCCC
Confidence 34799999999999999999999999876554333211 23578999999999999999999999999
Q ss_pred CEEEccccHHHHhh
Q 013384 422 SARDIIGGLESWAN 435 (444)
Q Consensus 422 ~v~~l~GG~~aW~~ 435 (444)
+++. .||+.+|.-
T Consensus 87 ~v~~-~GG~~~~~~ 99 (104)
T PRK10287 87 HAEN-AGGLKDIAM 99 (104)
T ss_pred eEEe-cCCHHHHhh
Confidence 9987 699999963
No 88
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.63 E-value=5.4e-16 Score=124.04 Aligned_cols=87 Identities=37% Similarity=0.600 Sum_probs=71.9
Q ss_pred HHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHH
Q 013384 334 KEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQ 413 (444)
Q Consensus 334 ~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~G~~S~~aa~ 413 (444)
.+++. +++..+||+|++.+|+.+|||||+|+|+..+.... .. ...+++++|||||..|.+|..+++
T Consensus 3 ~~~~~-~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~---~~----------~~~~~~~~vv~~c~~~~~a~~~~~ 68 (89)
T cd00158 3 KELLD-DEDAVLLDVREPEEYAAGHIPGAINIPLSELEERA---AL----------LELDKDKPIVVYCRSGNRSARAAK 68 (89)
T ss_pred HHHhc-CCCeEEEECCCHHHHhccccCCCEecchHHHhhHH---Hh----------hccCCCCeEEEEeCCCchHHHHHH
Confidence 44444 35689999999999999999999999998765432 00 011346899999999999999999
Q ss_pred HHHHcCCCCEEEccccHHHHh
Q 013384 414 ALHKLGFTSARDIIGGLESWA 434 (444)
Q Consensus 414 ~L~~~G~~~v~~l~GG~~aW~ 434 (444)
.|++.||.+++++.||+.+|.
T Consensus 69 ~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 69 LLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred HHHHhCcccEEEecCChhhcC
Confidence 999999999999999999994
No 89
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.63 E-value=6.6e-16 Score=157.15 Aligned_cols=100 Identities=27% Similarity=0.496 Sum_probs=85.2
Q ss_pred CCccCHHHHHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCC
Q 013384 325 DSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRR 404 (444)
Q Consensus 325 ~~~Is~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~ 404 (444)
.+.|+++++.++++++ .++||||++.||..+|||||+|+|+..+...+..+ .. +++++|||||++
T Consensus 2 v~~is~~el~~~l~~~--~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~---~~----------~~~~~IvvyC~~ 66 (376)
T PRK08762 2 IREISPAEARARAAQG--AVLIDVREAHERASGQAEGALRIPRGFLELRIETH---LP----------DRDREIVLICAS 66 (376)
T ss_pred CceeCHHHHHHHHhCC--CEEEECCCHHHHhCCcCCCCEECCHHHHHHHHhhh---cC----------CCCCeEEEEcCC
Confidence 3569999999998753 79999999999999999999999998765433221 11 235899999999
Q ss_pred ChhHHHHHHHHHHcCCCCEEEccccHHHHhhCcCC
Q 013384 405 GNDSQRAVQALHKLGFTSARDIIGGLESWANDVDP 439 (444)
Q Consensus 405 G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~~p 439 (444)
|.+|..|++.|+..||++|+++.||+.+|...+.|
T Consensus 67 G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p 101 (376)
T PRK08762 67 GTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLP 101 (376)
T ss_pred CcHHHHHHHHHHHcCCCceEeecCcHHHHHhcCCc
Confidence 99999999999999999999999999999988765
No 90
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.63 E-value=2e-15 Score=131.96 Aligned_cols=101 Identities=15% Similarity=0.210 Sum_probs=81.4
Q ss_pred cCHHHHHHHHhc---CCCcEEEEecCc--------ccccc------------cCCCCceecCchhhhhh-------h---
Q 013384 328 ISSKEYKEKVVN---GEAHILVDVRPA--------HHFRI------------VSLPNSINIPLSDLESR-------L--- 374 (444)
Q Consensus 328 Is~~el~~~l~~---~~~~~lIDVR~~--------~ef~~------------ghIpgAiniP~~~l~~~-------~--- 374 (444)
||++++.+.+.+ +++.+|||+|+. .+|.. ||||||+|+|+..+... +
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 578999999873 356899999987 88988 99999999998765331 1
Q ss_pred hhhHHHhhhhhhhcCCCCCCCCeEEEEcCC---ChhHHHHHHHHHHcCCCCEEEccccHHHHh
Q 013384 375 PEISSAMKEKEEHRGSNASSGSNLYVVCRR---GNDSQRAVQALHKLGFTSARDIIGGLESWA 434 (444)
Q Consensus 375 ~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~---G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~ 434 (444)
+++.+.+.. .+.+++++||+||.. |..+.++++.|+.+|+++|++|+||+.+|+
T Consensus 81 ~~~~~~~~~------~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 81 AEFAAMFEA------KGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHH------cCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 233443332 344678999999986 778999999999999999999999999996
No 91
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.55 E-value=1.7e-14 Score=143.62 Aligned_cols=108 Identities=20% Similarity=0.334 Sum_probs=85.9
Q ss_pred CccCHHHHHHHHhcCCCcEEEEecCcccc-----------cccCCCCceecCchhhhhh------hhhhHHHhhhhhhhc
Q 013384 326 SRISSKEYKEKVVNGEAHILVDVRPAHHF-----------RIVSLPNSINIPLSDLESR------LPEISSAMKEKEEHR 388 (444)
Q Consensus 326 ~~Is~~el~~~l~~~~~~~lIDVR~~~ef-----------~~ghIpgAiniP~~~l~~~------~~~l~~~~~~~~~~~ 388 (444)
..++.+++.+.+.+ ++.+|||+|++.+| ..||||||+|+|+..+.+. .+++...+...
T Consensus 190 ~~~~~~~v~~~~~~-~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~---- 264 (320)
T PLN02723 190 LVWTLEQVKKNIED-KTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQE---- 264 (320)
T ss_pred ceecHHHHHHhhcC-CCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhc----
Confidence 34788999888865 35789999999988 4699999999999776432 24444443322
Q ss_pred CCCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCCEEEccccHHHHhhCcCCCCC
Q 013384 389 GSNASSGSNLYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWANDVDPSFP 442 (444)
Q Consensus 389 ~~~~~~~~~Ivv~C~~G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~~p~~P 442 (444)
+.+++++||+||.+|.+|..++..|+.+||++|++|+|||..|... +..|
T Consensus 265 --gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~--~~~P 314 (320)
T PLN02723 265 --GISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGAL--PDTP 314 (320)
T ss_pred --CCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcC--CCCC
Confidence 2356789999999999999999999999999999999999999766 4455
No 92
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.55 E-value=1.9e-14 Score=140.97 Aligned_cols=106 Identities=20% Similarity=0.294 Sum_probs=84.1
Q ss_pred ccCHHHHHHHHhcCCCcEEEEecC----------cccccccCCCCceecCchhhhhh----------hhhhHHHhhhhhh
Q 013384 327 RISSKEYKEKVVNGEAHILVDVRP----------AHHFRIVSLPNSINIPLSDLESR----------LPEISSAMKEKEE 386 (444)
Q Consensus 327 ~Is~~el~~~l~~~~~~~lIDVR~----------~~ef~~ghIpgAiniP~~~l~~~----------~~~l~~~~~~~~~ 386 (444)
-++++++.+.+.+ ++++|||+|+ +.+|..||||||+|+|+..+... .+.+.+.+.+
T Consensus 6 lvs~~~l~~~l~~-~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 81 (281)
T PRK11493 6 FVAADWLAEHIDD-PEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRE--- 81 (281)
T ss_pred ccCHHHHHHhcCC-CCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHH---
Confidence 4899999999876 4689999997 67899999999999998765432 1233333332
Q ss_pred hcCCCCCCCCeEEEEcCCCh-hHHHHHHHHHHcCCCCEEEccccHHHHhhCcCC
Q 013384 387 HRGSNASSGSNLYVVCRRGN-DSQRAVQALHKLGFTSARDIIGGLESWANDVDP 439 (444)
Q Consensus 387 ~~~~~~~~~~~Ivv~C~~G~-~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~~p 439 (444)
.+.+++++|||||.++. .+..+++.|+.+||++|++|+||+.+|.+++.|
T Consensus 82 ---~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p 132 (281)
T PRK11493 82 ---LGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLL 132 (281)
T ss_pred ---cCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCC
Confidence 23466799999999876 477888999999999999999999999987654
No 93
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.53 E-value=3.2e-14 Score=141.67 Aligned_cols=109 Identities=13% Similarity=0.241 Sum_probs=85.8
Q ss_pred CCCccCHHHHHHHHhcCCCcEEEEec--------C-cccccccCCCCceecCchhhhhhh----------hhhHHHhhhh
Q 013384 324 ADSRISSKEYKEKVVNGEAHILVDVR--------P-AHHFRIVSLPNSINIPLSDLESRL----------PEISSAMKEK 384 (444)
Q Consensus 324 ~~~~Is~~el~~~l~~~~~~~lIDVR--------~-~~ef~~ghIpgAiniP~~~l~~~~----------~~l~~~~~~~ 384 (444)
+...|+++++.+++++ ++.+||||| + ..+|..||||||+|+|+..+.... +.+.+.+..
T Consensus 20 ~~~lvs~~~L~~~l~~-~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~- 97 (320)
T PLN02723 20 NEPVVSVDWLHANLRE-PDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSA- 97 (320)
T ss_pred CCceecHHHHHHHhcC-CCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHH-
Confidence 3457999999999976 568999996 2 368999999999999987765431 233333333
Q ss_pred hhhcCCCCCCCCeEEEEcCCCh-hHHHHHHHHHHcCCCCEEEccccHHHHhhCcCC
Q 013384 385 EEHRGSNASSGSNLYVVCRRGN-DSQRAVQALHKLGFTSARDIIGGLESWANDVDP 439 (444)
Q Consensus 385 ~~~~~~~~~~~~~Ivv~C~~G~-~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~~p 439 (444)
.+.+++++|||||..|. .+.++++.|+.+||++|++|+||+.+|..++.|
T Consensus 98 -----~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~p 148 (320)
T PLN02723 98 -----LGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYD 148 (320)
T ss_pred -----cCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCC
Confidence 23466789999999876 567888999999999999999999999988765
No 94
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.53 E-value=2.9e-14 Score=152.61 Aligned_cols=106 Identities=15% Similarity=0.220 Sum_probs=86.7
Q ss_pred ccCHHHHHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhh----------hhhhHHHhhhhhhhcCCCCCCCC
Q 013384 327 RISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESR----------LPEISSAMKEKEEHRGSNASSGS 396 (444)
Q Consensus 327 ~Is~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~----------~~~l~~~~~~~~~~~~~~~~~~~ 396 (444)
-||++|+++++++ ++.+|||||++.+|..||||||+|+|++.+... .+++...+.+ .+.++++
T Consensus 10 lIs~~eL~~~l~~-~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~------lGI~~d~ 82 (610)
T PRK09629 10 VIEPNDLLERLDA-PELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGE------LGHNPDA 82 (610)
T ss_pred eecHHHHHHHhcC-CCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHH------cCCCCCC
Confidence 4999999999976 468999999999999999999999998653211 2234443333 2346789
Q ss_pred eEEEEcCCC-hhHHHHHHHHHHcCCCCEEEccccHHHHhhCcCC
Q 013384 397 NLYVVCRRG-NDSQRAVQALHKLGFTSARDIIGGLESWANDVDP 439 (444)
Q Consensus 397 ~Ivv~C~~G-~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~~p 439 (444)
+|||||+.| .++.++++.|+.+|+++|++|+||+.+|..++.|
T Consensus 83 ~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p 126 (610)
T PRK09629 83 VYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALP 126 (610)
T ss_pred EEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCc
Confidence 999999987 4888999999999999999999999999998765
No 95
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.52 E-value=6.9e-14 Score=140.44 Aligned_cols=204 Identities=18% Similarity=0.211 Sum_probs=143.0
Q ss_pred HHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc--------------------------ccCcc
Q 013384 87 GQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--------------------------INSTV 140 (444)
Q Consensus 87 ~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R--------------------------lnp~~ 140 (444)
.-.++++.|++++|+|.+||.+|++|...||.||++||+.+|.-||--| ++|.+
T Consensus 334 nLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m 413 (669)
T KOG2337|consen 334 NLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSM 413 (669)
T ss_pred chhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCccc
Confidence 3468999999999999999999999999999999999999999999988 88988
Q ss_pred eEEEEeecCCc-----------------ccHHhhcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccCCcceEEEE
Q 013384 141 HIIEHREALRT-----------------SNALEILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGLEGQLTVY 203 (444)
Q Consensus 141 ~v~~~~~~~~~-----------------~~~~~~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~l~~~ 203 (444)
+-..|...+.. +...+++++.|+|+-.+|+.+.|.+=.-.|...++-+|++ ++|++.++..-
T Consensus 414 ~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINa-ALGFDsylVMR 492 (669)
T KOG2337|consen 414 EATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINA-ALGFDSYLVMR 492 (669)
T ss_pred cccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeee-ecccceeEEEe
Confidence 87777655431 2345678999999999999999987777777788878876 57777766432
Q ss_pred e--------------------CCCCCceeecCCCCCCCccC--CcccCCCcccchhHHHHHHHHHHHHHHHhcCC-----
Q 013384 204 N--------------------YNGGPCYRCLFPTPPPTTAC--QRCADSGVLGVVPGIIGCLQALEAIKVASAVG----- 256 (444)
Q Consensus 204 ~--------------------~~~~~C~~C~~~~~~~~~~~--~~c~~~~~~~~~~~i~g~l~a~e~lk~l~g~~----- 256 (444)
+ ..+-+||.|---..|..... +--..-.|.-|-.++|++-.|.|.+--+++.+
T Consensus 493 HG~~~~~~~~d~q~s~~~~i~~~qLGCYFCnDV~AP~nSl~DRTLDQqCTVtRPG~a~IA~alAVELlvslLQhP~~~a~ 572 (669)
T KOG2337|consen 493 HGTGRKEASDDGQSSDLKCINGDQLGCYFCNDVVAPGNSLTDRTLDQQCTVTRPGVANIASALAVELLVSLLQHPLGYAQ 572 (669)
T ss_pred cCCCCcccccccccccccccCcccceeEeEcceecCCCcccccchhheeeccCCchhHHHHHHHHHHHHHHHhCcccccc
Confidence 1 12457888875555433211 11112235567777888888888887776654
Q ss_pred CC----CC---Cce-----eEeecCCCeEEEEEee-ccCCCCCccCCC
Q 013384 257 EP----LS---GRM-----LLFDALSARIRIVKIR-GRSSQCEACGEN 291 (444)
Q Consensus 257 ~~----~~---~~~-----~~~d~~~~~~~~~~~~-~r~~~C~~Cg~~ 291 (444)
.. .. ... +.+-++-.+|..+... .+-++|++||+.
T Consensus 573 ~~s~~~~~n~~~tvLG~lPHQIRGfL~nFs~i~~~~~af~qC~ACS~~ 620 (669)
T KOG2337|consen 573 NSSEETEENEPTTVLGILPHQIRGFLHNFSNILPSTQAFDQCTACSEA 620 (669)
T ss_pred CCCcccccCCCCcccccccHHHHHhhhhhhhhccccccccccchhhHH
Confidence 00 00 001 1122222344444433 477899999874
No 96
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.52 E-value=4.1e-14 Score=138.51 Aligned_cols=102 Identities=20% Similarity=0.333 Sum_probs=81.2
Q ss_pred ccCHHHHHHHHhcCCCcEEEEecCccccc-----------ccCCCCceecCchhhhhh-----hhhhHHHhhhhhhhcCC
Q 013384 327 RISSKEYKEKVVNGEAHILVDVRPAHHFR-----------IVSLPNSINIPLSDLESR-----LPEISSAMKEKEEHRGS 390 (444)
Q Consensus 327 ~Is~~el~~~l~~~~~~~lIDVR~~~ef~-----------~ghIpgAiniP~~~l~~~-----~~~l~~~~~~~~~~~~~ 390 (444)
..+.+++...+.. .+++|||+|++.||. .||||||+|+|+..+.+. .+++...+...
T Consensus 154 ~~~~~~v~~~~~~-~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~------ 226 (281)
T PRK11493 154 VVRLTDVLLASHE-KTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGR------ 226 (281)
T ss_pred eecHHHHHHhhcC-CCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHhc------
Confidence 4566777766654 357899999999995 699999999999887532 34444443322
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHHcCCCCEEEccccHHHHhh
Q 013384 391 NASSGSNLYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWAN 435 (444)
Q Consensus 391 ~~~~~~~Ivv~C~~G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~ 435 (444)
+.+++++||+||++|.+|..++..|+.+||++|++|+|||..|..
T Consensus 227 g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~ 271 (281)
T PRK11493 227 GVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGA 271 (281)
T ss_pred CCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHcc
Confidence 235578999999999999999999999999999999999999986
No 97
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.50 E-value=5.8e-14 Score=121.79 Aligned_cols=109 Identities=16% Similarity=0.214 Sum_probs=76.2
Q ss_pred cCHHHHHHHHhcC-CCcEEEEecCcccccccCCCCceecCchhhhhhhh-----hhHHHhhhhhhhcCCCCCCCCeEEEE
Q 013384 328 ISSKEYKEKVVNG-EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLP-----EISSAMKEKEEHRGSNASSGSNLYVV 401 (444)
Q Consensus 328 Is~~el~~~l~~~-~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~-----~l~~~~~~~~~~~~~~~~~~~~Ivv~ 401 (444)
|+++++.+++.++ ++.+|||||+..+|..+|||||+|+|+..+..... .....+............++++||||
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VVvY 81 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRRGESLAVVVY 81 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhcCCCCeEEEE
Confidence 7899999999864 56899999999999999999999999986542110 00000000000000001135899999
Q ss_pred cCCChh---------HHHHHHHHHH--cCCCCEEEccccHHHHhhC
Q 013384 402 CRRGND---------SQRAVQALHK--LGFTSARDIIGGLESWAND 436 (444)
Q Consensus 402 C~~G~~---------S~~aa~~L~~--~G~~~v~~l~GG~~aW~~~ 436 (444)
|..+.+ +..+++.|.. .|+.+|+.++||+.+|...
T Consensus 82 d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 82 DESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred eCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence 998765 6666777776 3678999999999999875
No 98
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.49 E-value=1.3e-13 Score=147.60 Aligned_cols=104 Identities=11% Similarity=0.263 Sum_probs=84.6
Q ss_pred CccCHHHHHHHHhcCCCcEEEEecCccccc--------ccCCCCceecCchhhhhh------hhhhHHHhhhhhhhcCCC
Q 013384 326 SRISSKEYKEKVVNGEAHILVDVRPAHHFR--------IVSLPNSINIPLSDLESR------LPEISSAMKEKEEHRGSN 391 (444)
Q Consensus 326 ~~Is~~el~~~l~~~~~~~lIDVR~~~ef~--------~ghIpgAiniP~~~l~~~------~~~l~~~~~~~~~~~~~~ 391 (444)
..++.+++.+.+++ ++.+|||+|++.+|. .||||||+|+|+..+.+. .+++.+.+... +
T Consensus 147 ~~v~~e~v~~~l~~-~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~------G 219 (610)
T PRK09629 147 PTATREYLQSRLGA-ADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDL------G 219 (610)
T ss_pred ccccHHHHHHhhCC-CCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHc------C
Confidence 46889999988865 457899999999995 699999999999764321 23444444332 2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCCCEEEccccHHHHhhC
Q 013384 392 ASSGSNLYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWAND 436 (444)
Q Consensus 392 ~~~~~~Ivv~C~~G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~ 436 (444)
.+++++||+||.+|.+|..++..|+.+||++|++|+|||.+|...
T Consensus 220 i~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~ 264 (610)
T PRK09629 220 ITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNH 264 (610)
T ss_pred CCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCC
Confidence 356789999999999999999999999999999999999999875
No 99
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.48 E-value=4.2e-14 Score=139.40 Aligned_cols=93 Identities=27% Similarity=0.429 Sum_probs=68.8
Q ss_pred cEEEEecCcccccccCCCCceecCchhhhhhh-----------------------hhhHHHhhhhhhhcCCCCCCCCeEE
Q 013384 343 HILVDVRPAHHFRIVSLPNSINIPLSDLESRL-----------------------PEISSAMKEKEEHRGSNASSGSNLY 399 (444)
Q Consensus 343 ~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~-----------------------~~l~~~~~~~~~~~~~~~~~~~~Iv 399 (444)
.+|||||++.||..||||||+|||+...++.. ..++..+.+.. ...+++..||
T Consensus 3 ~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~----~~~~~~~~vv 78 (311)
T TIGR03167 3 DPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWR----AFADGPPQPL 78 (311)
T ss_pred CEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHH----hhcCCCCcEE
Confidence 58999999999999999999999995432210 11222221110 0012234599
Q ss_pred EEc-CCChhHHHHHHHHHHcCCCCEEEccccHHHHhhCcCCC
Q 013384 400 VVC-RRGNDSQRAVQALHKLGFTSARDIIGGLESWANDVDPS 440 (444)
Q Consensus 400 v~C-~~G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~~p~ 440 (444)
||| ++|.+|..++++|+.+|| +|+++.||+.+|...+.+.
T Consensus 79 vyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~ 119 (311)
T TIGR03167 79 LYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQ 119 (311)
T ss_pred EEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhh
Confidence 999 578999999999999999 6999999999999887544
No 100
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.48 E-value=5.6e-14 Score=140.40 Aligned_cols=106 Identities=24% Similarity=0.346 Sum_probs=77.0
Q ss_pred cCHHHHHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhhh-----------------------hhhHHHhhhh
Q 013384 328 ISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRL-----------------------PEISSAMKEK 384 (444)
Q Consensus 328 Is~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~-----------------------~~l~~~~~~~ 384 (444)
....++.+++.+ +.+|||||++.||..||||||+|+|+....+.. ..+...+...
T Consensus 3 ~~~~~~~~~~~~--~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~ 80 (345)
T PRK11784 3 PDAQDFRALFLN--DTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEA 80 (345)
T ss_pred CcHHHHHHHHhC--CCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHH
Confidence 346777777654 479999999999999999999999995432210 0112111111
Q ss_pred hhhcCCCCCCCCeEEEEc-CCChhHHHHHHHHHHcCCCCEEEccccHHHHhhCcCC
Q 013384 385 EEHRGSNASSGSNLYVVC-RRGNDSQRAVQALHKLGFTSARDIIGGLESWANDVDP 439 (444)
Q Consensus 385 ~~~~~~~~~~~~~Ivv~C-~~G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~~p 439 (444)
.. ...+++++||||| ++|.||..+++.|+..|| +++.+.||+.+|+..+.+
T Consensus 81 ~~---~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~ 132 (345)
T PRK11784 81 WA---DFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVID 132 (345)
T ss_pred HH---hcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHH
Confidence 00 0002468999999 578999999999999999 699999999999987643
No 101
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.43 E-value=4.8e-13 Score=129.38 Aligned_cols=108 Identities=25% Similarity=0.388 Sum_probs=85.8
Q ss_pred CCccCHHHHHHHHhcCCCcEEEEecCcccccc----------cCCCCceecCchhhhhh-----hhhhHHHhhhhhhhcC
Q 013384 325 DSRISSKEYKEKVVNGEAHILVDVRPAHHFRI----------VSLPNSINIPLSDLESR-----LPEISSAMKEKEEHRG 389 (444)
Q Consensus 325 ~~~Is~~el~~~l~~~~~~~lIDVR~~~ef~~----------ghIpgAiniP~~~l~~~-----~~~l~~~~~~~~~~~~ 389 (444)
...++.++....++. ...+|||+|++.+|.. ||||||+|||+..+.+. ..+..+.+.+.
T Consensus 155 ~~~~~~~~~~~~~~~-~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~----- 228 (285)
T COG2897 155 KAVVDATLVADALEV-PAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYAD----- 228 (285)
T ss_pred cccCCHHHHHHHhcC-CCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHh-----
Confidence 455777888887776 4578999999999998 99999999999988662 11222222211
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHHcCCCCEEEccccHHHHhhCcC
Q 013384 390 SNASSGSNLYVVCRRGNDSQRAVQALHKLGFTSARDIIGGLESWANDVD 438 (444)
Q Consensus 390 ~~~~~~~~Ivv~C~~G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~~ 438 (444)
.+.+++++||+||++|.+|...+..|+.+|+.+++.|+|++..|....+
T Consensus 229 ~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~ 277 (285)
T COG2897 229 AGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPD 277 (285)
T ss_pred cCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCC
Confidence 2347789999999999999999999999999888999999999987643
No 102
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.24 E-value=1.5e-11 Score=117.17 Aligned_cols=103 Identities=15% Similarity=0.297 Sum_probs=87.4
Q ss_pred CCccCHHHHHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCC
Q 013384 325 DSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRR 404 (444)
Q Consensus 325 ~~~Is~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~ 404 (444)
...|+++++.+++.+ ++.++||+|...||+.||..||++.+...+.+..+.+.+..... .+++|+.||.+
T Consensus 112 G~yl~p~~wn~~l~D-~~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~~~~~---------~~KkVvmyCTG 181 (308)
T COG1054 112 GTYLSPKDWNELLSD-PDVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLDLL---------KDKKVVMYCTG 181 (308)
T ss_pred cCccCHHHHHHHhcC-CCeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHHHHHHhc---------cCCcEEEEcCC
Confidence 467899999999977 56999999999999999999999999988766544444332222 25799999999
Q ss_pred ChhHHHHHHHHHHcCCCCEEEccccHHHHhhCc
Q 013384 405 GNDSQRAVQALHKLGFTSARDIIGGLESWANDV 437 (444)
Q Consensus 405 G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~ 437 (444)
|.|-.++..+|+..||++|+.|+||+-.|.++.
T Consensus 182 GIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~~ 214 (308)
T COG1054 182 GIRCEKASAWMKENGFKEVYHLEGGILKYLEDV 214 (308)
T ss_pred ceeehhhHHHHHHhcchhhhcccchHHHHhhhc
Confidence 999999999999999999999999999987764
No 103
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.23 E-value=4.2e-11 Score=115.96 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=86.3
Q ss_pred CCCccCHHHHHHHHhcC----CCcEEEEecCc--ccccccCCCCceecCchhhhhhh----------hhhHHHhhhhhhh
Q 013384 324 ADSRISSKEYKEKVVNG----EAHILVDVRPA--HHFRIVSLPNSINIPLSDLESRL----------PEISSAMKEKEEH 387 (444)
Q Consensus 324 ~~~~Is~~el~~~l~~~----~~~~lIDVR~~--~ef~~ghIpgAiniP~~~l~~~~----------~~l~~~~~~~~~~ 387 (444)
...-||++++.+.+... .++.+++++.. .+|..+|||||+++++....... +.+.+.+.+
T Consensus 9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~---- 84 (285)
T COG2897 9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGE---- 84 (285)
T ss_pred cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHH----
Confidence 44568999999988742 24566666665 88999999999999998765432 233333332
Q ss_pred cCCCCCCCCeEEEEcCCCh-hHHHHHHHHHHcCCCCEEEccccHHHHhhCcCCC
Q 013384 388 RGSNASSGSNLYVVCRRGN-DSQRAVQALHKLGFTSARDIIGGLESWANDVDPS 440 (444)
Q Consensus 388 ~~~~~~~~~~Ivv~C~~G~-~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~~p~ 440 (444)
.+.+.+.+||+|...++ .|.++++.|+-+|.++|++|+||+.+|++++.|.
T Consensus 85 --~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~ 136 (285)
T COG2897 85 --LGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPL 136 (285)
T ss_pred --cCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCc
Confidence 34567899999997665 7999999999999999999999999999998764
No 104
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.13 E-value=6e-11 Score=124.47 Aligned_cols=73 Identities=16% Similarity=0.322 Sum_probs=62.6
Q ss_pred CCcEEEEecCcccccccCCCC----ceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCCChhHHHHHHHHH
Q 013384 341 EAHILVDVRPAHHFRIVSLPN----SINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRRGNDSQRAVQALH 416 (444)
Q Consensus 341 ~~~~lIDVR~~~ef~~ghIpg----AiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~G~~S~~aa~~L~ 416 (444)
++.++||||+++||+.+|||| |+|+|+.++...+..+ +++++||+||++|.+|..|+..|+
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~~~~l---------------~~~~~iivyC~~G~rS~~aa~~L~ 470 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQFGDL---------------DQSKTYLLYCDRGVMSRLQALYLR 470 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHHHhhc---------------CCCCeEEEECCCCHHHHHHHHHHH
Confidence 457999999999999999999 9999998876533222 235799999999999999999999
Q ss_pred HcCCCCEEEccc
Q 013384 417 KLGFTSARDIIG 428 (444)
Q Consensus 417 ~~G~~~v~~l~G 428 (444)
+.||+||++|.+
T Consensus 471 ~~G~~nv~~y~~ 482 (482)
T PRK01269 471 EQGFSNVKVYRP 482 (482)
T ss_pred HcCCccEEecCC
Confidence 999999998753
No 105
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=2.5e-09 Score=103.77 Aligned_cols=106 Identities=14% Similarity=0.221 Sum_probs=78.5
Q ss_pred CCCCccCHHHHHHHHhcC-----CCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCe
Q 013384 323 SADSRISSKEYKEKVVNG-----EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSN 397 (444)
Q Consensus 323 ~~~~~Is~~el~~~l~~~-----~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 397 (444)
...++||++.++.+++.. ..++|||+|-+.||..|||+||+||+..+....+.-...... ......-
T Consensus 153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~f~~~~~~~--------~~~~~~i 224 (325)
T KOG3772|consen 153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDFFLLKDGVP--------SGSKRVI 224 (325)
T ss_pred ccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhhhccccccc--------cccCcee
Confidence 456899999999999852 237799999999999999999999998765433211111110 0112357
Q ss_pred EEEEcC-CChhHHHHHHHHHH------------cCCCCEEEccccHHHHhhC
Q 013384 398 LYVVCR-RGNDSQRAVQALHK------------LGFTSARDIIGGLESWAND 436 (444)
Q Consensus 398 Ivv~C~-~G~~S~~aa~~L~~------------~G~~~v~~l~GG~~aW~~~ 436 (444)
+||+|. +..|...+|+.|+. +-|..+|+|+||+..|...
T Consensus 225 ~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 225 LIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred EEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 899997 45699999999994 2556799999999999765
No 106
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.68 E-value=4.3e-08 Score=93.35 Aligned_cols=110 Identities=17% Similarity=0.246 Sum_probs=84.3
Q ss_pred ccCHHHHHHHHhcCCCcEEEEec---------CcccccccCCCCceecCchhhhhhhhhhH------HHhhhhhhhcCCC
Q 013384 327 RISSKEYKEKVVNGEAHILVDVR---------PAHHFRIVSLPNSINIPLSDLESRLPEIS------SAMKEKEEHRGSN 391 (444)
Q Consensus 327 ~Is~~el~~~l~~~~~~~lIDVR---------~~~ef~~ghIpgAiniP~~~l~~~~~~l~------~~~~~~~~~~~~~ 391 (444)
-++++.+.+.+.+ ...+|||.- ...||...|||||+++.++.+.......+ +.+.+. .+..+
T Consensus 6 iv~~~~v~~~~~~-~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y--~~~lG 82 (286)
T KOG1529|consen 6 IVSVKWVMENLGN-HGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEY--ASRLG 82 (286)
T ss_pred ccChHHHHHhCcC-CCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHH--HHhcC
Confidence 4788999998877 568999984 45678889999999998877643311111 111111 23355
Q ss_pred CCCCCeEEEEcC--CCh-hHHHHHHHHHHcCCCCEEEccccHHHHhhCcCC
Q 013384 392 ASSGSNLYVVCR--RGN-DSQRAVQALHKLGFTSARDIIGGLESWANDVDP 439 (444)
Q Consensus 392 ~~~~~~Ivv~C~--~G~-~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~~~p 439 (444)
.+++..+|||.+ .|+ .|.+++|+|+-+|+++|..+.||+.+|++.+.|
T Consensus 83 i~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~ 133 (286)
T KOG1529|consen 83 VDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGP 133 (286)
T ss_pred CCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCc
Confidence 677889999999 776 689999999999999999999999999998765
No 107
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=98.57 E-value=1.1e-06 Score=81.11 Aligned_cols=95 Identities=18% Similarity=0.285 Sum_probs=75.3
Q ss_pred CHHHHHhhhcCcEEEECCCccHHH-HHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCc
Q 013384 84 GVEGQSNLLKSSILVIGAGGLGSP-ALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYE 162 (444)
Q Consensus 84 g~~~q~~L~~~~VlIvG~GglGs~-ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~D 162 (444)
+...|++|++++|.|+|.|+.|+. ++..|+.+||+.+. + + .+.+
T Consensus 96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~-------~----------------------~------a~l~ 140 (193)
T TIGR03882 96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP-------S----------------------E------ADLT 140 (193)
T ss_pred HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC-------C----------------------C------CCEE
Confidence 467899999999999999999988 99999999997653 0 0 1345
Q ss_pred EEEEccCChHh-HHHHHHHHHHcCCcEEEEcccCCcceEEE-EeCCCCCceeec
Q 013384 163 IVVDATDNAPS-RYMISDCCVVLGKPLVSGAALGLEGQLTV-YNYNGGPCYRCL 214 (444)
Q Consensus 163 vVi~~~D~~~~-r~~i~~~~~~~~~p~i~~~~~g~~G~l~~-~~~~~~~C~~C~ 214 (444)
+|+ +.|.... ...+|+.+.+.++||+.....|..+-+.+ +.|+.++||+|+
T Consensus 141 vVl-~~Dyl~p~L~~~n~~~l~~~~~~l~v~~~~~~~~~gp~~~p~~~~c~~c~ 193 (193)
T TIGR03882 141 VVL-TDDYLDPELAAINQRALAAGRPWLLVKPGGVQPWIGPLFKPGKTGCWHCL 193 (193)
T ss_pred EEE-eCCCCChHHHHHHHHHHHcCCceEEEEeCCceEEECCeecCCCCcccccC
Confidence 555 4455444 45799999999999999988777777765 458999999996
No 108
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.49 E-value=3e-07 Score=87.70 Aligned_cols=88 Identities=20% Similarity=0.337 Sum_probs=72.1
Q ss_pred CCcEEEEecCccccc-----------ccCCCCceecCchhhhhh------hhhhHHHhhhhhhhcCCCCCCCCeEEEEcC
Q 013384 341 EAHILVDVRPAHHFR-----------IVSLPNSINIPLSDLESR------LPEISSAMKEKEEHRGSNASSGSNLYVVCR 403 (444)
Q Consensus 341 ~~~~lIDVR~~~ef~-----------~ghIpgAiniP~~~l~~~------~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~ 403 (444)
.++..||.|...+|. .+|||||+|+|+.++... .+++.+.+.++.. .-++|+++-|.
T Consensus 171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l------~~~~p~~~sC~ 244 (286)
T KOG1529|consen 171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGL------KLSKPVIVSCG 244 (286)
T ss_pred ccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCc------ccCCCEEEeec
Confidence 458899999999985 489999999999887653 3455555544431 33689999999
Q ss_pred CChhHHHHHHHHHHcCCCCEEEccccHHHHhh
Q 013384 404 RGNDSQRAVQALHKLGFTSARDIIGGLESWAN 435 (444)
Q Consensus 404 ~G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~ 435 (444)
.|..+...+-.|.+.| .++..|+|++..|..
T Consensus 245 ~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 245 TGISASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred cchhHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 9999999999999999 789999999999985
No 109
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=97.98 E-value=2e-05 Score=75.84 Aligned_cols=102 Identities=19% Similarity=0.284 Sum_probs=74.9
Q ss_pred CCCCccCHHHHHHHHhcC-----CCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCe
Q 013384 323 SADSRISSKEYKEKVVNG-----EAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSN 397 (444)
Q Consensus 323 ~~~~~Is~~el~~~l~~~-----~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 397 (444)
...+|||++.++.+++.. .+.+|||+|=+.||..|||-+||||.-.+- +...+..+. .+...-
T Consensus 239 Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~------l~~~F~hkp------lThp~a 306 (427)
T COG5105 239 DSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKK------LGLLFRHKP------LTHPRA 306 (427)
T ss_pred cchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHHH------HHHHHHhcc------ccCcee
Confidence 456899999999999753 236799999999999999999999976531 111111110 011256
Q ss_pred EEEEcC-CChhHHHHHHHHHHc------------CCCCEEEccccHHHHhhC
Q 013384 398 LYVVCR-RGNDSQRAVQALHKL------------GFTSARDIIGGLESWAND 436 (444)
Q Consensus 398 Ivv~C~-~G~~S~~aa~~L~~~------------G~~~v~~l~GG~~aW~~~ 436 (444)
+|+.|. +..|+...|..|+.. =|..|+++.||+.++...
T Consensus 307 LifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n 358 (427)
T COG5105 307 LIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSN 358 (427)
T ss_pred EEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhc
Confidence 899997 457999999999864 355799999999987554
No 110
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.98 E-value=2.3e-05 Score=79.29 Aligned_cols=97 Identities=25% Similarity=0.364 Sum_probs=75.4
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccc-cC-cceEEEEeecCCc-ccHHhhcCCCcEEEEccCC
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRI-NS-TVHIIEHREALRT-SNALEILSQYEIVVDATDN 170 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rl-np-~~~v~~~~~~~~~-~~~~~~~~~~DvVi~~~D~ 170 (444)
.+|+|+|+|++|+.+|..|++.|.++|++.|.. .+++.|+ .+ .-++++....+.. +...++++++|+||+|...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs---~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS---KEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC---HHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 579999999999999999999999999999864 2345552 11 1155565555554 3556889999999999988
Q ss_pred hHhHHHHHHHHHHcCCcEEEEccc
Q 013384 171 APSRYMISDCCVVLGKPLVSGAAL 194 (444)
Q Consensus 171 ~~~r~~i~~~~~~~~~p~i~~~~~ 194 (444)
+-.. .+.++|.+.|+++++.+..
T Consensus 79 ~~~~-~i~ka~i~~gv~yvDts~~ 101 (389)
T COG1748 79 FVDL-TILKACIKTGVDYVDTSYY 101 (389)
T ss_pred hhhH-HHHHHHHHhCCCEEEcccC
Confidence 7665 7788999999999997644
No 111
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=97.90 E-value=0.00019 Score=62.91 Aligned_cols=159 Identities=21% Similarity=0.272 Sum_probs=104.6
Q ss_pred CcEEEECCCccHHHHHHHHH---HcCCCcEEEeeCCccccccc-cc-------------------ccCcceEEEEeecCC
Q 013384 94 SSILVIGAGGLGSPALLYLA---ACGVGRLGIVDHDVVELNNM-HR-------------------INSTVHIIEHREALR 150 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La---~~Gvg~i~lvD~D~V~~sNl-~R-------------------lnp~~~v~~~~~~~~ 150 (444)
..|.++|||-+|--++..|. +-|..+|.++|+..|++.++ || -.+.-+|+++++.++
T Consensus 19 GeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr~Ga~~GEyKv~Fi~rl~~~~f~r~V~a~pE~it 98 (217)
T COG4015 19 GEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRRLGAKVGEYKVDFIKRLGRVHFGRRVEAFPENIT 98 (217)
T ss_pred ceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHHhCCCcchhHHHHHHHhCcCCCCceeeccccccc
Confidence 45999999999999999887 57889999999999999886 44 345668999999999
Q ss_pred cccHHhhcCCCcEEEEcc---CChHhHHHHHHHHHHcCCcEEEEc-ccCC-cceEEEEeC--CCCCceeecCCCCCCC--
Q 013384 151 TSNALEILSQYEIVVDAT---DNAPSRYMISDCCVVLGKPLVSGA-ALGL-EGQLTVYNY--NGGPCYRCLFPTPPPT-- 221 (444)
Q Consensus 151 ~~~~~~~~~~~DvVi~~~---D~~~~r~~i~~~~~~~~~p~i~~~-~~g~-~G~l~~~~~--~~~~C~~C~~~~~~~~-- 221 (444)
.+|+..+-. |+|+-|. |+.++-..|..+|++.++..|+.. ++|. .-.+.++.- .++|-.+-+...--+.
T Consensus 99 ~dNlhll~g--DVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT~GVFGigeEev~v~~~eeA~gP~~~~lldeg~~dHi 176 (217)
T COG4015 99 KDNLHLLKG--DVVVICIAGGDTIPVTAAIINYAKERGIKTISTNGVFGIGEEEVKVCDAEEAKGPAKFLLLDEGGPDHI 176 (217)
T ss_pred ccchhhhcC--CEEEEEecCCCcchhHHHHHHHHHHcCceEeecCceeecchhheEEeehhhcCccHHHHHHhcCCCceE
Confidence 888876643 7776554 677888889999999999888743 2332 112333321 2233222222111110
Q ss_pred --ccCCcccCC-CcccchhHHHHHHHHHHHHHHHhc
Q 013384 222 --TACQRCADS-GVLGVVPGIIGCLQALEAIKVASA 254 (444)
Q Consensus 222 --~~~~~c~~~-~~~~~~~~i~g~l~a~e~lk~l~g 254 (444)
.+-.--.+. ++.+.+.--++--|..|++++|..
T Consensus 177 lVgTgk~IRD~ePitPyvLdrva~~mt~e~Lr~L~~ 212 (217)
T COG4015 177 LVGTGKFIRDFEPITPYVLDRVAKRMTIECLRILWS 212 (217)
T ss_pred EEecCccccCCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 000011122 233334456888899999999864
No 112
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.87 E-value=1.6e-05 Score=69.15 Aligned_cols=79 Identities=28% Similarity=0.319 Sum_probs=55.3
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
.|++++|+|+|+||.|..++.+|+..|+.+|+|++.+.-....|....+...+..... +...+.+.++|+||.||.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~----~~~~~~~~~~DivI~aT~ 84 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPL----EDLEEALQEADIVINATP 84 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEG----GGHCHHHHTESEEEE-SS
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeH----HHHHHHHhhCCeEEEecC
Confidence 6899999999999999999999999999999998753222222211223334444332 233456789999999998
Q ss_pred ChH
Q 013384 170 NAP 172 (444)
Q Consensus 170 ~~~ 172 (444)
...
T Consensus 85 ~~~ 87 (135)
T PF01488_consen 85 SGM 87 (135)
T ss_dssp TTS
T ss_pred CCC
Confidence 753
No 113
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.80 E-value=4.6e-05 Score=63.06 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=64.2
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
.|++++|+|||.|.+|..-++.|..+| .+++++..+. +... .. +......+ .+.+.++++|+.|++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~~~-----~~--i~~~~~~~-----~~~l~~~~lV~~at~ 69 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EFSE-----GL--IQLIRREF-----EEDLDGADLVFAATD 69 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HHHH-----TS--CEEEESS------GGGCTTESEEEE-SS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hhhh-----hH--HHHHhhhH-----HHHHhhheEEEecCC
Confidence 588999999999999999999999999 6999999885 1111 11 22233322 244688999999999
Q ss_pred ChHhHHHHHHHHHHcCCcEEEE
Q 013384 170 NAPSRYMISDCCVVLGKPLVSG 191 (444)
Q Consensus 170 ~~~~r~~i~~~~~~~~~p~i~~ 191 (444)
++.....|.+.|++.++|+-.+
T Consensus 70 d~~~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 70 DPELNEAIYADARARGILVNVV 91 (103)
T ss_dssp -HHHHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHHHHHhhCCEEEEEC
Confidence 9999999999999999866543
No 114
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.76 E-value=0.0002 Score=66.72 Aligned_cols=93 Identities=12% Similarity=0.204 Sum_probs=66.3
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
.|++++|+|||.|.+|...++.|...| .++++|+.+.-+ .+..+.+.-.+......+. ...+.++|+||.||+
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~~~--~l~~l~~~~~i~~~~~~~~----~~~l~~adlViaaT~ 79 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPELTE--NLVKLVEEGKIRWKQKEFE----PSDIVDAFLVIAATN 79 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCCH--HHHHHHhCCCEEEEecCCC----hhhcCCceEEEEcCC
Confidence 689999999999999999999999999 699999764321 1111222222333333322 234578999999999
Q ss_pred ChHhHHHHHHHHHHcCCcEEEE
Q 013384 170 NAPSRYMISDCCVVLGKPLVSG 191 (444)
Q Consensus 170 ~~~~r~~i~~~~~~~~~p~i~~ 191 (444)
+++.-..|...| ..+++ ++.
T Consensus 80 d~elN~~i~~~a-~~~~l-vn~ 99 (202)
T PRK06718 80 DPRVNEQVKEDL-PENAL-FNV 99 (202)
T ss_pred CHHHHHHHHHHH-HhCCc-EEE
Confidence 999988999898 45664 444
No 115
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.72 E-value=0.00024 Score=66.27 Aligned_cols=95 Identities=19% Similarity=0.269 Sum_probs=71.5
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
.|++++|+|||.|.+|..-++.|...|. ++++|+.+.-+ .+..+...-+++.....+. ...+.++++||.|||
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~~--~l~~l~~~~~i~~~~~~~~----~~dl~~~~lVi~at~ 78 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELES--ELTLLAEQGGITWLARCFD----ADILEGAFLVIAATD 78 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCCH--HHHHHHHcCCEEEEeCCCC----HHHhCCcEEEEECCC
Confidence 4789999999999999999999999995 89999876431 1111111124555554444 234678999999999
Q ss_pred ChHhHHHHHHHHHHcCCcEEEE
Q 013384 170 NAPSRYMISDCCVVLGKPLVSG 191 (444)
Q Consensus 170 ~~~~r~~i~~~~~~~~~p~i~~ 191 (444)
+.+....+...|...++++-.+
T Consensus 79 d~~ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 79 DEELNRRVAHAARARGVPVNVV 100 (205)
T ss_pred CHHHHHHHHHHHHHcCCEEEEC
Confidence 9988889999999999877443
No 116
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.64 E-value=6.6e-05 Score=73.66 Aligned_cols=74 Identities=24% Similarity=0.276 Sum_probs=53.5
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc----ccCcceEEEEeecCCcccHHhhcCCCcEEE
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR----INSTVHIIEHREALRTSNALEILSQYEIVV 165 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R----lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi 165 (444)
.++.++|+|+|+||+|..++..|+..|+++|+|+|.+.-....+.+ .++.+.+... ++..+.+.++|+||
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~------~~~~~~~~~aDiVI 197 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAG------SDLAAALAAADGLV 197 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEec------cchHhhhCCCCEEE
Confidence 3567899999999999999999999999999999987544444433 2333332221 22334557899999
Q ss_pred EccC
Q 013384 166 DATD 169 (444)
Q Consensus 166 ~~~D 169 (444)
+||-
T Consensus 198 naTp 201 (284)
T PRK12549 198 HATP 201 (284)
T ss_pred ECCc
Confidence 9974
No 117
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.52 E-value=0.00072 Score=60.39 Aligned_cols=86 Identities=15% Similarity=0.258 Sum_probs=63.9
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
..|++++|+|||.|.+|...++.|...|. ++++|+.+..+. +..+. .+.+....+.+ ..+.++|+||.||
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~~--l~~l~---~i~~~~~~~~~----~dl~~a~lViaaT 78 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICKE--MKELP---YITWKQKTFSN----DDIKDAHLIYAAT 78 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCHH--HHhcc---CcEEEecccCh----hcCCCceEEEECC
Confidence 47899999999999999999999999996 888997665431 11121 23333333332 2357899999999
Q ss_pred CChHhHHHHHHHHHHc
Q 013384 169 DNAPSRYMISDCCVVL 184 (444)
Q Consensus 169 D~~~~r~~i~~~~~~~ 184 (444)
|+.+.-..+...|...
T Consensus 79 ~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 79 NQHAVNMMVKQAAHDF 94 (157)
T ss_pred CCHHHHHHHHHHHHHC
Confidence 9999988888888764
No 118
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.39 E-value=0.00032 Score=71.78 Aligned_cols=95 Identities=19% Similarity=0.258 Sum_probs=68.4
Q ss_pred EEEECCCccHHHHHHHHHHcCCC-cEEEeeCCcccccccccccCcceEEEEeecCCc-ccHHhhcCCCcEEEEccCChHh
Q 013384 96 ILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRINSTVHIIEHREALRT-SNALEILSQYEIVVDATDNAPS 173 (444)
Q Consensus 96 VlIvG~GglGs~ia~~La~~Gvg-~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~-~~~~~~~~~~DvVi~~~D~~~~ 173 (444)
|+|+|+|.+|+.++..|++.+-- ++++.|.+.-....+.+-....++......+.+ +...++++++|+||+|...+ .
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~ 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence 79999999999999999998854 999999876655444431133345555555553 34677889999999999877 6
Q ss_pred HHHHHHHHHHcCCcEEEE
Q 013384 174 RYMISDCCVVLGKPLVSG 191 (444)
Q Consensus 174 r~~i~~~~~~~~~p~i~~ 191 (444)
...+.++|.+.++++|+.
T Consensus 80 ~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 80 GEPVARACIEAGVHYVDT 97 (386)
T ss_dssp HHHHHHHHHHHT-EEEES
T ss_pred hHHHHHHHHHhCCCeecc
Confidence 668899999999999993
No 119
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=97.22 E-value=0.0028 Score=59.75 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=71.1
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
..+++.+|+|||.|.++..=+..|..+| .+|++|-.+.-+. +..+...-.+++....+.+ ..+.++++||.||
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i~~e--l~~l~~~~~i~~~~r~~~~----~dl~g~~LViaAT 93 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKFSKE--FLDLKKYGNLKLIKGNYDK----EFIKDKHLIVIAT 93 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCCCHH--HHHHHhCCCEEEEeCCCCh----HHhCCCcEEEECC
Confidence 4678999999999999999899999999 5799987654321 1111111235555544442 3357899999999
Q ss_pred CChHhHHHHHHHHHHcCCcEEEE
Q 013384 169 DNAPSRYMISDCCVVLGKPLVSG 191 (444)
Q Consensus 169 D~~~~r~~i~~~~~~~~~p~i~~ 191 (444)
|+++.-..|...|...++++..+
T Consensus 94 dD~~vN~~I~~~a~~~~~lvn~v 116 (223)
T PRK05562 94 DDEKLNNKIRKHCDRLYKLYIDC 116 (223)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEc
Confidence 99999999999999998876654
No 120
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.12 E-value=0.00048 Score=67.51 Aligned_cols=75 Identities=24% Similarity=0.401 Sum_probs=50.0
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-ccC---cceEEEEeecCCcccHHhhcCCCcEEEE
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-INS---TVHIIEHREALRTSNALEILSQYEIVVD 166 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-lnp---~~~v~~~~~~~~~~~~~~~~~~~DvVi~ 166 (444)
+++++|+|+|+||.|..++..|+..|+.+|+|+|.+.-....|.. ++. ...+.. ....+..+.+..+|+||+
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~----~~~~~~~~~~~~~divIN 200 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVG----VDARGIEDVIAAADGVVN 200 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEe----cCHhHHHHHHhhcCEEEE
Confidence 567899999999999999999999999999999876543333322 221 111111 111111223467899999
Q ss_pred ccC
Q 013384 167 ATD 169 (444)
Q Consensus 167 ~~D 169 (444)
||-
T Consensus 201 aTp 203 (283)
T PRK14027 201 ATP 203 (283)
T ss_pred cCC
Confidence 884
No 121
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.08 E-value=0.00056 Score=67.11 Aligned_cols=77 Identities=26% Similarity=0.288 Sum_probs=51.1
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-ccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-INSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
+++++|+|+|+||.|..++..|+..|+.+|+|++.+.-...+|.. +.....+.... ..+.....+..+|+||+||-
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~---~~~~~~~~~~~~DiVInaTp 199 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLE---GDSGGLAIEKAAEVLVSTVP 199 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceecc---chhhhhhcccCCCEEEECCC
Confidence 567899999999999999999999999999999765433333322 21111111111 00222344578999999985
Q ss_pred C
Q 013384 170 N 170 (444)
Q Consensus 170 ~ 170 (444)
-
T Consensus 200 ~ 200 (282)
T TIGR01809 200 A 200 (282)
T ss_pred C
Confidence 4
No 122
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.05 E-value=0.0029 Score=54.16 Aligned_cols=91 Identities=24% Similarity=0.376 Sum_probs=60.0
Q ss_pred cEEEECC-CccHHHHHHHHHH-cCCCcEEEeeCCc--cccccccc---ccCcceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 95 SILVIGA-GGLGSPALLYLAA-CGVGRLGIVDHDV--VELNNMHR---INSTVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 95 ~VlIvG~-GglGs~ia~~La~-~Gvg~i~lvD~D~--V~~sNl~R---lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
||+|+|+ |-.|..+++.+.. .|+.=...+|... ..-.++.- .. ...+ .+ .++..+++..+|+|||.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~-----~v-~~~l~~~~~~~DVvIDf 74 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGV-----PV-TDDLEELLEEADVVIDF 74 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SS-----BE-BS-HHHHTTH-SEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-Cccc-----cc-chhHHHhcccCCEEEEc
Confidence 7999999 9999999999998 6665566666654 11111111 11 0111 11 14567778889999999
Q ss_pred cCChHhHHHHHHHHHHcCCcEEEEcc
Q 013384 168 TDNAPSRYMISDCCVVLGKPLVSGAA 193 (444)
Q Consensus 168 ~D~~~~r~~i~~~~~~~~~p~i~~~~ 193 (444)
| +++.-...-++|.++++|+|.+.+
T Consensus 75 T-~p~~~~~~~~~~~~~g~~~ViGTT 99 (124)
T PF01113_consen 75 T-NPDAVYDNLEYALKHGVPLVIGTT 99 (124)
T ss_dssp S--HHHHHHHHHHHHHHT-EEEEE-S
T ss_pred C-ChHHhHHHHHHHHhCCCCEEEECC
Confidence 9 778888888899999999998753
No 123
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.96 E-value=0.0013 Score=61.44 Aligned_cols=95 Identities=17% Similarity=0.150 Sum_probs=68.6
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
.|++++|+|||.|.+|..=++.|..+|. +++++-.+. ..-+..+-...++......+. .+.+.++++||-|||
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~--~~el~~~~~~~~i~~~~~~~~----~~~~~~~~lviaAt~ 81 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEF--EPELKALIEEGKIKWIEREFD----AEDLDDAFLVIAATD 81 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCc--cHHHHHHHHhcCcchhhcccC----hhhhcCceEEEEeCC
Confidence 6889999999999999999999999995 788876666 222222111112333332222 233355999999999
Q ss_pred ChHhHHHHHHHHHHcCCcEEEE
Q 013384 170 NAPSRYMISDCCVVLGKPLVSG 191 (444)
Q Consensus 170 ~~~~r~~i~~~~~~~~~p~i~~ 191 (444)
+++.-..+.+.|..+++|+-.+
T Consensus 82 d~~ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 82 DEELNERIAKAARERRILVNVV 103 (210)
T ss_pred CHHHHHHHHHHHHHhCCceecc
Confidence 9999999999999999876543
No 124
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.95 E-value=0.0016 Score=58.87 Aligned_cols=58 Identities=22% Similarity=0.329 Sum_probs=47.9
Q ss_pred hhhcCcEEEECCCcc-HHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 90 NLLKSSILVIGAGGL-GSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 90 ~L~~~~VlIvG~Ggl-Gs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
.|++++|+|||+|.. |..++++|...|+ ++++++.. .++..+.+.++|+||.|+
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~------------------------~~~l~~~l~~aDiVIsat 95 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSK------------------------TKNLKEHTKQADIVIVAV 95 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECC------------------------chhHHHHHhhCCEEEEcC
Confidence 589999999999984 9999999999998 68876532 134566789999999999
Q ss_pred CChH
Q 013384 169 DNAP 172 (444)
Q Consensus 169 D~~~ 172 (444)
..+.
T Consensus 96 ~~~~ 99 (168)
T cd01080 96 GKPG 99 (168)
T ss_pred CCCc
Confidence 8865
No 125
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.82 E-value=0.00037 Score=63.52 Aligned_cols=94 Identities=22% Similarity=0.195 Sum_probs=62.4
Q ss_pred HHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEE
Q 013384 87 GQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVD 166 (444)
Q Consensus 87 ~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~ 166 (444)
....|.+++|.|+|+|.+|..+|+.|...|. ++..+|...-...... ...+...+..++++.+|+|+.
T Consensus 30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~-----------~~~~~~~~l~ell~~aDiv~~ 97 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGAD-----------EFGVEYVSLDELLAQADIVSL 97 (178)
T ss_dssp TBS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHH-----------HTTEEESSHHHHHHH-SEEEE
T ss_pred CccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhcc-----------cccceeeehhhhcchhhhhhh
Confidence 3458899999999999999999999999998 7888776544321000 001122456778889999987
Q ss_pred ccC-ChHhHHHHHHHHHHc---CCcEEEEc
Q 013384 167 ATD-NAPSRYMISDCCVVL---GKPLVSGA 192 (444)
Q Consensus 167 ~~D-~~~~r~~i~~~~~~~---~~p~i~~~ 192 (444)
+.- +++++.+|++..... +.-+|+.+
T Consensus 98 ~~plt~~T~~li~~~~l~~mk~ga~lvN~a 127 (178)
T PF02826_consen 98 HLPLTPETRGLINAEFLAKMKPGAVLVNVA 127 (178)
T ss_dssp -SSSSTTTTTSBSHHHHHTSTTTEEEEESS
T ss_pred hhccccccceeeeeeeeeccccceEEEecc
Confidence 765 667888887776544 33466654
No 126
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.82 E-value=0.0044 Score=61.62 Aligned_cols=91 Identities=19% Similarity=0.138 Sum_probs=62.7
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
..|++++|.|||.|.+|..+|+.|...|+ ++..+|...-. .+. +..+ .......+++.++|+|+.+.
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~~-------~~~--~~~~---~~~~~l~e~l~~aDvvv~~l 198 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRKS-------WPG--VQSF---AGREELSAFLSQTRVLINLL 198 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCC-------CCC--ceee---cccccHHHHHhcCCEEEECC
Confidence 46889999999999999999999999998 56666642211 011 1111 12345678899999988776
Q ss_pred C-ChHhHHHHHHHHHH---cCCcEEEEc
Q 013384 169 D-NAPSRYMISDCCVV---LGKPLVSGA 192 (444)
Q Consensus 169 D-~~~~r~~i~~~~~~---~~~p~i~~~ 192 (444)
. +++++..++..... .+.-+|+.+
T Consensus 199 Plt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 199 PNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred CCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 4 67888888865433 234466654
No 127
>COG2603 Predicted ATPase [General function prediction only]
Probab=96.82 E-value=0.0016 Score=62.43 Aligned_cols=99 Identities=23% Similarity=0.372 Sum_probs=61.2
Q ss_pred CHHHHHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhh-----------------------hhhhHHHhhhhh
Q 013384 329 SSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESR-----------------------LPEISSAMKEKE 385 (444)
Q Consensus 329 s~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~-----------------------~~~l~~~~~~~~ 385 (444)
+.+.+..++.+. ..+||||.+.||..|+.|+++|+|...=... -.++.....+..
T Consensus 4 ~~q~~~~~~~~~--~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~as 81 (334)
T COG2603 4 TEQDYRALLLAD--TPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEAS 81 (334)
T ss_pred hHHHHHHHHhcC--CceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHH
Confidence 355666666553 6799999999999999999999997321111 001111000000
Q ss_pred hhcCCCCCCCCeEEEEcC-CChhHHHHHHHH-HHcCCCCEEEccccHHHHh
Q 013384 386 EHRGSNASSGSNLYVVCR-RGNDSQRAVQAL-HKLGFTSARDIIGGLESWA 434 (444)
Q Consensus 386 ~~~~~~~~~~~~Ivv~C~-~G~~S~~aa~~L-~~~G~~~v~~l~GG~~aW~ 434 (444)
. .. .-+.|+-++|. +|.+|...+.+| +..|++ +--+.||..+.+
T Consensus 82 k--~f--~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 82 K--AF--QEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred H--HH--HHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 0 00 01246666685 566999999999 677874 445678887754
No 128
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.81 E-value=0.0021 Score=63.32 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=34.0
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
+++++|+|+|+||+|..++..|+..|+.+|+|++.+.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 5678999999999999999999999999999998764
No 129
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.79 E-value=0.0012 Score=68.02 Aligned_cols=77 Identities=16% Similarity=0.283 Sum_probs=53.4
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
.|.+++|+|+|+|+.|..++++|+..|+.+|+|+....-...+|....+... .. ..++..+.+.++|+||.||-
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~--~~----~~~~l~~~l~~aDiVI~aT~ 251 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNAS--AH----YLSELPQLIKKADIIIAAVN 251 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCe--Ee----cHHHHHHHhccCCEEEECcC
Confidence 4788999999999999999999999999999997654221112211111111 11 11344677889999999997
Q ss_pred ChH
Q 013384 170 NAP 172 (444)
Q Consensus 170 ~~~ 172 (444)
.+.
T Consensus 252 a~~ 254 (414)
T PRK13940 252 VLE 254 (414)
T ss_pred CCC
Confidence 754
No 130
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.74 E-value=0.0097 Score=60.76 Aligned_cols=93 Identities=22% Similarity=0.350 Sum_probs=57.6
Q ss_pred CCCCHHHHhhhhccccCCCCCHHHHHhh-----hcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCCccccccccccc
Q 013384 64 YGLSPDMIYRYSRHLLLPSFGVEGQSNL-----LKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRIN 137 (444)
Q Consensus 64 ~~l~~~~~~ry~Rq~~l~~~g~~~q~~L-----~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rln 137 (444)
..|+++.++..-|.+.-..+-.+.|..+ ...+|+||| +|.+|..++..|...|. .++++|.+..
T Consensus 64 ~~l~~~~~~~i~~~i~~~s~~~q~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~~~--------- 133 (374)
T PRK11199 64 LGVPPDLIEDVLRRVMRESYSSENDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQDDW--------- 133 (374)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhHHhcccccCcccceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCCcc---------
Confidence 3567766655554443211112223333 236799998 99999999999999994 5888875421
Q ss_pred CcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhHHHHHHH
Q 013384 138 STVHIIEHREALRTSNALEILSQYEIVVDATDNAPSRYMISDC 180 (444)
Q Consensus 138 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r~~i~~~ 180 (444)
++..+.+.++|+||.|+-.......+.++
T Consensus 134 --------------~~~~~~~~~aDlVilavP~~~~~~~~~~l 162 (374)
T PRK11199 134 --------------DRAEDILADAGMVIVSVPIHLTEEVIARL 162 (374)
T ss_pred --------------hhHHHHHhcCCEEEEeCcHHHHHHHHHHH
Confidence 12334556788888887655544444443
No 131
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.70 E-value=0.0026 Score=56.73 Aligned_cols=94 Identities=21% Similarity=0.311 Sum_probs=62.3
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccc--cc----cCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMH--RI----NSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~--Rl----np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
||.|+|+|..|+.+|..|+..| .+++|.+.|.-....++ |. .|.+++.. +..++ .+..+.++++|+||-++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~-~i~~t-~dl~~a~~~ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPE-NIKAT-TDLEEALEDADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHHTSETTTSTTSBEET-TEEEE-SSHHHHHTT-SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCc-ccccc-cCHHHHhCcccEEEecc
Confidence 6999999999999999999999 68899888753222232 22 33333222 11222 45567789999999999
Q ss_pred CChHhHHHHHHHHH--HcCCcEEEE
Q 013384 169 DNAPSRYMISDCCV--VLGKPLVSG 191 (444)
Q Consensus 169 D~~~~r~~i~~~~~--~~~~p~i~~ 191 (444)
.....+..+.+... ..+.++|.+
T Consensus 78 Ps~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 78 PSQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp -GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred cHHHHHHHHHHHhhccCCCCEEEEe
Confidence 99888877777654 456677764
No 132
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.68 E-value=0.0027 Score=62.48 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=33.7
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
+++++|+|+|+||.+..++..|+..|+.+|+|++.+
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 577899999999999999999999999999999876
No 133
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.66 E-value=0.002 Score=62.96 Aligned_cols=75 Identities=24% Similarity=0.411 Sum_probs=51.2
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-ccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-INSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
.+++++|+|+|+||+|..++..|+..|+.++++++.+.-....+.. +.....+.. . .+..+.+.++|+||+||
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~-----~~~~~~~~~~DivInaT 193 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAEL-D-----LELQEELADFDLIINAT 193 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceee-c-----ccchhccccCCEEEECC
Confidence 3678899999999999999999999999999999876433333322 211100111 0 12234567899999998
Q ss_pred CC
Q 013384 169 DN 170 (444)
Q Consensus 169 D~ 170 (444)
-.
T Consensus 194 p~ 195 (278)
T PRK00258 194 SA 195 (278)
T ss_pred cC
Confidence 53
No 134
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.66 E-value=0.0016 Score=66.50 Aligned_cols=76 Identities=24% Similarity=0.378 Sum_probs=53.2
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
.|++++|+|||+|-.|.-+|++|+..|+.+|+|+....-...- +........ +.-++..+.+.++|+||.||.
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~---La~~~~~~~----~~l~el~~~l~~~DvVissTs 247 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEE---LAKKLGAEA----VALEELLEALAEADVVISSTS 247 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHH---HHHHhCCee----ecHHHHHHhhhhCCEEEEecC
Confidence 4899999999999999999999999999999994221111110 111111111 122455677899999999998
Q ss_pred ChH
Q 013384 170 NAP 172 (444)
Q Consensus 170 ~~~ 172 (444)
.+.
T Consensus 248 a~~ 250 (414)
T COG0373 248 APH 250 (414)
T ss_pred CCc
Confidence 764
No 135
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.65 E-value=0.0035 Score=62.34 Aligned_cols=83 Identities=25% Similarity=0.332 Sum_probs=57.3
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCC
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDN 170 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~ 170 (444)
+.+.+|+|+|+|.+|..++++|...|+.+++++|.+.-....+.+.... ... ..++..+.+.++|+||.||..
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~---~~~----~~~~~~~~l~~aDvVi~at~~ 248 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG---NAV----PLDELLELLNEADVVISATGA 248 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC---eEE----eHHHHHHHHhcCCEEEECCCC
Confidence 6789999999999999999999999999999998754322222221111 111 112345567889999999998
Q ss_pred hHhHHHHHHH
Q 013384 171 APSRYMISDC 180 (444)
Q Consensus 171 ~~~r~~i~~~ 180 (444)
+.....+.+.
T Consensus 249 ~~~~~~~~~~ 258 (311)
T cd05213 249 PHYAKIVERA 258 (311)
T ss_pred CchHHHHHHH
Confidence 8763333333
No 136
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.59 E-value=0.0041 Score=50.23 Aligned_cols=90 Identities=22% Similarity=0.264 Sum_probs=59.0
Q ss_pred cEEEECCCccHHHHHHHHHHcCC--CcEEEe-eCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCCh
Q 013384 95 SILVIGAGGLGSPALLYLAACGV--GRLGIV-DHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA 171 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gv--g~i~lv-D~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~ 171 (444)
||.|||+|.+|..++..|...|+ .++.++ +.+.-....+.+..+ +. +...+..+.++.+|+||.|+...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~advvilav~p~ 72 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG---VQ-----ATADDNEEAAQEADVVILAVKPQ 72 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT---TE-----EESEEHHHHHHHTSEEEE-S-GG
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc---cc-----cccCChHHhhccCCEEEEEECHH
Confidence 68999999999999999999994 456654 554443333332222 11 11124566677899999999888
Q ss_pred HhHHHHHHH-HHHcCCcEEEEc
Q 013384 172 PSRYMISDC-CVVLGKPLVSGA 192 (444)
Q Consensus 172 ~~r~~i~~~-~~~~~~p~i~~~ 192 (444)
.....+.+. ....++-+|+..
T Consensus 73 ~~~~v~~~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 73 QLPEVLSEIPHLLKGKLVISIA 94 (96)
T ss_dssp GHHHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHHhhccCCCEEEEeC
Confidence 777766666 455677777754
No 137
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.55 E-value=0.0037 Score=64.79 Aligned_cols=76 Identities=22% Similarity=0.296 Sum_probs=53.7
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
.+.+++|+|+|+|.+|..++++|...|+.+++++|.+.-....+.+.... ... ..++..+.+.++|+||.||.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~---~~i----~~~~l~~~l~~aDvVi~aT~ 249 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG---EAV----KFEDLEEYLAEADIVISSTG 249 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC---eEe----eHHHHHHHHhhCCEEEECCC
Confidence 47889999999999999999999999999999998754221112211111 111 11344566789999999997
Q ss_pred ChH
Q 013384 170 NAP 172 (444)
Q Consensus 170 ~~~ 172 (444)
.+.
T Consensus 250 s~~ 252 (417)
T TIGR01035 250 APH 252 (417)
T ss_pred CCC
Confidence 764
No 138
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.52 E-value=0.0023 Score=56.44 Aligned_cols=75 Identities=20% Similarity=0.366 Sum_probs=49.2
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-ccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-INSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
+++++|+|+|+|++|..+++.|...|...+.++|.+.-....+.+ +.... + . ....+..+.++++|+||.|+-
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~-~---~--~~~~~~~~~~~~~Dvvi~~~~ 90 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG-I---A--IAYLDLEELLAEADLIINTTP 90 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc-c---c--eeecchhhccccCCEEEeCcC
Confidence 667899999999999999999999987789998875322222111 11100 0 0 011223344688999999986
Q ss_pred Ch
Q 013384 170 NA 171 (444)
Q Consensus 170 ~~ 171 (444)
..
T Consensus 91 ~~ 92 (155)
T cd01065 91 VG 92 (155)
T ss_pred CC
Confidence 54
No 139
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.42 E-value=0.0055 Score=63.28 Aligned_cols=90 Identities=19% Similarity=0.177 Sum_probs=58.9
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
.+.+++|+|+|+|.+|..+++.|...|+ +++++|.|.....- .... ... . .+..+.++.+|+||+|+.
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~-A~~~-G~~--v-------~~l~eal~~aDVVI~aTG 276 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQ-AAMD-GFR--V-------MTMEEAAELGDIFVTATG 276 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHH-HHhc-CCE--e-------cCHHHHHhCCCEEEECCC
Confidence 4689999999999999999999999999 79998876543100 0000 111 0 123455678999999997
Q ss_pred ChHhHHHHHHHH---HHcCCcEEEEccc
Q 013384 170 NAPSRYMISDCC---VVLGKPLVSGAAL 194 (444)
Q Consensus 170 ~~~~r~~i~~~~---~~~~~p~i~~~~~ 194 (444)
+.. .++... .+.+.-+++++..
T Consensus 277 ~~~---vI~~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 277 NKD---VITAEHMEAMKDGAILANIGHF 301 (425)
T ss_pred CHH---HHHHHHHhcCCCCCEEEEcCCC
Confidence 754 343222 2344456666543
No 140
>PLN02928 oxidoreductase family protein
Probab=96.41 E-value=0.0064 Score=61.43 Aligned_cols=102 Identities=18% Similarity=0.201 Sum_probs=64.2
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccc-cCcceEEEEe-ecCCcccHHhhcCCCcEEEE
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRI-NSTVHIIEHR-EALRTSNALEILSQYEIVVD 166 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rl-np~~~v~~~~-~~~~~~~~~~~~~~~DvVi~ 166 (444)
..|.+++|.|||.|.+|..+|+.|...|. ++..+|...-.... ..+ -|...+..+. ......+..++++.+|+|+.
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl 232 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSWTSEPE-DGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVL 232 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCChhhh-hhhccccccccccccccCcccCHHHHHhhCCEEEE
Confidence 36999999999999999999999999998 77777753100000 000 0000000100 01123467788999999998
Q ss_pred ccC-ChHhHHHHHHHHHHc---CCcEEEEc
Q 013384 167 ATD-NAPSRYMISDCCVVL---GKPLVSGA 192 (444)
Q Consensus 167 ~~D-~~~~r~~i~~~~~~~---~~p~i~~~ 192 (444)
++- +++++.+|++..... +.-+|+.+
T Consensus 233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 233 CCTLTKETAGIVNDEFLSSMKKGALLVNIA 262 (347)
T ss_pred CCCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence 774 678888888765443 33466654
No 141
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.35 E-value=0.0031 Score=61.59 Aligned_cols=44 Identities=23% Similarity=0.455 Sum_probs=35.9
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccc
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMH 134 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~ 134 (444)
+++++|+|+|+||.+..++..|+..|+.+|+|++...-....|.
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La 167 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELA 167 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 34688999999999999999999999999999865444433333
No 142
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.35 E-value=0.0072 Score=60.14 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=62.6
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
..|.+++|.|||.|.+|..+|+.|...|. ++..+|.-.... . ..+......++++.+|+|+.+.
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~~~~--------~-------~~~~~~~l~ell~~sDvv~lh~ 204 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSGKNK--------N-------EEYERVSLEELLKTSDIISIHA 204 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCcccc--------c-------cCceeecHHHHhhcCCEEEEeC
Confidence 47999999999999999999999988887 566666521100 0 0111235678899999988766
Q ss_pred C-ChHhHHHHHHHHHHcCC---cEEEEc
Q 013384 169 D-NAPSRYMISDCCVVLGK---PLVSGA 192 (444)
Q Consensus 169 D-~~~~r~~i~~~~~~~~~---p~i~~~ 192 (444)
- +++++.+|++.....=+ -+|+.+
T Consensus 205 Plt~~T~~li~~~~~~~Mk~~a~lIN~a 232 (311)
T PRK08410 205 PLNEKTKNLIAYKELKLLKDGAILINVG 232 (311)
T ss_pred CCCchhhcccCHHHHHhCCCCeEEEECC
Confidence 4 67899999888665544 366654
No 143
>PRK07574 formate dehydrogenase; Provisional
Probab=96.35 E-value=0.053 Score=55.48 Aligned_cols=93 Identities=17% Similarity=0.206 Sum_probs=61.5
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
..|.+++|.|||.|.+|..+|+.|...|+ ++..+|...... ...+ ...+.. .....++++.+|+|+.+.
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~-~~~~---~~g~~~------~~~l~ell~~aDvV~l~l 256 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPE-EVEQ---ELGLTY------HVSFDSLVSVCDVVTIHC 256 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCch-hhHh---hcCcee------cCCHHHHhhcCCEEEEcC
Confidence 45899999999999999999999999998 666766432110 0000 000111 134677889999987665
Q ss_pred -CChHhHHHHHHHHHH---cCCcEEEEc
Q 013384 169 -DNAPSRYMISDCCVV---LGKPLVSGA 192 (444)
Q Consensus 169 -D~~~~r~~i~~~~~~---~~~p~i~~~ 192 (444)
.+++++.++++.... .+.-+|+.+
T Consensus 257 Plt~~T~~li~~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 257 PLHPETEHLFDADVLSRMKRGSYLVNTA 284 (385)
T ss_pred CCCHHHHHHhCHHHHhcCCCCcEEEECC
Confidence 577888888765433 344466654
No 144
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.31 E-value=0.0038 Score=59.78 Aligned_cols=104 Identities=15% Similarity=0.224 Sum_probs=67.7
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHc----CC------CcEEEeeCCcccccccccccCcceEEEEeecCC--cccHHh
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAAC----GV------GRLGIVDHDVVELNNMHRINSTVHIIEHREALR--TSNALE 156 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~----Gv------g~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~--~~~~~~ 156 (444)
.+|++.||+++|+|..|..+++.|..+ |+ ++|.++|.+-+=..+-..++++-.-......-. ..+..+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~e 100 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLE 100 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHH
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcccccccCHHH
Confidence 469999999999999999999999999 99 899999998553322111221111000000000 035667
Q ss_pred hcCCC--cEEEEccCCh--HhHHHHHHHHHHcCCcEEEEc
Q 013384 157 ILSQY--EIVVDATDNA--PSRYMISDCCVVLGKPLVSGA 192 (444)
Q Consensus 157 ~~~~~--DvVi~~~D~~--~~r~~i~~~~~~~~~p~i~~~ 192 (444)
.++.. |++|.++.-+ =+...|-.++.....|+|+.-
T Consensus 101 av~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~L 140 (255)
T PF03949_consen 101 AVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPL 140 (255)
T ss_dssp HHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-
T ss_pred HHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEEC
Confidence 77777 9999887543 356678888888889999864
No 145
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.31 E-value=0.012 Score=67.01 Aligned_cols=99 Identities=18% Similarity=0.305 Sum_probs=66.1
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCC-C------------cEEEeeCCcccccccccccCcceEEEEeecCC-cccHHh
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGV-G------------RLGIVDHDVVELNNMHRINSTVHIIEHREALR-TSNALE 156 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gv-g------------~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~-~~~~~~ 156 (444)
-+.++|+|+|+|.+|..++.+|++.+- . .+++.|.+.-....+....|.++ +....+. .+...+
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~--~v~lDv~D~e~L~~ 644 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAE--AVQLDVSDSESLLK 644 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCc--eEEeecCCHHHHHH
Confidence 457899999999999999999998632 2 37777765433222222223332 2222232 244556
Q ss_pred hcCCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEc
Q 013384 157 ILSQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 192 (444)
Q Consensus 157 ~~~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~ 192 (444)
+++++|+||.|+... .-..+...|.+.|+.++..+
T Consensus 645 ~v~~~DaVIsalP~~-~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 645 YVSQVDVVISLLPAS-CHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred hhcCCCEEEECCCch-hhHHHHHHHHHcCCCEEECc
Confidence 668899999999873 44677788888888888764
No 146
>PLN02494 adenosylhomocysteinase
Probab=96.31 E-value=0.0036 Score=65.01 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=65.1
Q ss_pred hhhh-ccccCCCCCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCC
Q 013384 72 YRYS-RHLLLPSFGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALR 150 (444)
Q Consensus 72 ~ry~-Rq~~l~~~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~ 150 (444)
.||. ||..++.+=......|.+++|+|+|+|.+|..+|+.+...|+ ++.++|.|.......... ... ..
T Consensus 232 n~yGtgqS~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~--G~~--vv----- 301 (477)
T PLN02494 232 NLYGCRHSLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALME--GYQ--VL----- 301 (477)
T ss_pred ccccccccHHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhc--CCe--ec-----
Confidence 4776 665542222222334789999999999999999999999998 688888765431110000 011 00
Q ss_pred cccHHhhcCCCcEEEEccCChHh--HHHHHHHHHHcCCcEEEEcc
Q 013384 151 TSNALEILSQYEIVVDATDNAPS--RYMISDCCVVLGKPLVSGAA 193 (444)
Q Consensus 151 ~~~~~~~~~~~DvVi~~~D~~~~--r~~i~~~~~~~~~p~i~~~~ 193 (444)
...+.+..+|+||.++.+... ...+. ..+.+--+++++.
T Consensus 302 --~leEal~~ADVVI~tTGt~~vI~~e~L~--~MK~GAiLiNvGr 342 (477)
T PLN02494 302 --TLEDVVSEADIFVTTTGNKDIIMVDHMR--KMKNNAIVCNIGH 342 (477)
T ss_pred --cHHHHHhhCCEEEECCCCccchHHHHHh--cCCCCCEEEEcCC
Confidence 234566789999998877542 11221 1233445666653
No 147
>PRK06487 glycerate dehydrogenase; Provisional
Probab=96.30 E-value=0.0084 Score=59.83 Aligned_cols=86 Identities=21% Similarity=0.189 Sum_probs=61.6
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
..|.+++|.|||.|.+|..+|+.|...|. ++..+|... . +. ........++++.+|+|+.+.
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~~-~--------~~--------~~~~~~l~ell~~sDiv~l~l 205 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLPG-R--------PA--------RPDRLPLDELLPQVDALTLHC 205 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC-C--------cc--------cccccCHHHHHHhCCEEEECC
Confidence 36999999999999999999999998887 455555321 0 00 011125678899999988776
Q ss_pred C-ChHhHHHHHHHHHHcCC---cEEEEc
Q 013384 169 D-NAPSRYMISDCCVVLGK---PLVSGA 192 (444)
Q Consensus 169 D-~~~~r~~i~~~~~~~~~---p~i~~~ 192 (444)
- +++++.+||+.....=+ -+|+.+
T Consensus 206 Plt~~T~~li~~~~~~~mk~ga~lIN~a 233 (317)
T PRK06487 206 PLTEHTRHLIGARELALMKPGALLINTA 233 (317)
T ss_pred CCChHHhcCcCHHHHhcCCCCeEEEECC
Confidence 5 77899999887655433 366654
No 148
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.27 E-value=0.0064 Score=58.20 Aligned_cols=103 Identities=12% Similarity=0.148 Sum_probs=71.7
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCC----------cEEEeeCCcccccccccccCcceE---EEEeecCCcccHH
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVG----------RLGIVDHDVVELNNMHRINSTVHI---IEHREALRTSNAL 155 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg----------~i~lvD~D~V~~sNl~Rlnp~~~v---~~~~~~~~~~~~~ 155 (444)
.+|++.||+|+|+|+.|..+++.|..+|+. +|.++|.+-+=..+-..++|.-+. ...+.. ...+..
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~-~~~~L~ 99 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPER-ESGDLE 99 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCccc-ccCCHH
Confidence 578999999999999999999999999997 999999876543321112221111 011111 113567
Q ss_pred hhcC--CCcEEEEccCCh--HhHHHHHHHHHHcCCcEEEEc
Q 013384 156 EILS--QYEIVVDATDNA--PSRYMISDCCVVLGKPLVSGA 192 (444)
Q Consensus 156 ~~~~--~~DvVi~~~D~~--~~r~~i~~~~~~~~~p~i~~~ 192 (444)
+.++ +.|++|..+--+ =++..|..++.....|+|+.-
T Consensus 100 eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaL 140 (254)
T cd00762 100 DAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFAL 140 (254)
T ss_pred HHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEEC
Confidence 7777 899999877633 356677778877788999864
No 149
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.22 E-value=0.0093 Score=59.40 Aligned_cols=87 Identities=21% Similarity=0.212 Sum_probs=61.5
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
..|++++|.|||.|.+|..+|+.|...|+ ++..+|..... .. ........++++.+|+|+.+.
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~~~~-----------~~-----~~~~~~l~ell~~sDiv~l~~ 205 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHKGAS-----------VC-----REGYTPFEEVLKQADIVTLHC 205 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCccc-----------cc-----ccccCCHHHHHHhCCEEEEcC
Confidence 46999999999999999999999998888 45555531100 00 011235678899999988776
Q ss_pred C-ChHhHHHHHHHHHHcCC---cEEEEc
Q 013384 169 D-NAPSRYMISDCCVVLGK---PLVSGA 192 (444)
Q Consensus 169 D-~~~~r~~i~~~~~~~~~---p~i~~~ 192 (444)
- +++++.+||......=+ -+|+.+
T Consensus 206 Plt~~T~~li~~~~l~~mk~ga~lIN~a 233 (314)
T PRK06932 206 PLTETTQNLINAETLALMKPTAFLINTG 233 (314)
T ss_pred CCChHHhcccCHHHHHhCCCCeEEEECC
Confidence 5 77899999887655433 466654
No 150
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.22 E-value=0.0096 Score=58.98 Aligned_cols=88 Identities=19% Similarity=0.278 Sum_probs=60.0
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
..|.+++|.|||.|.+|..+|+.|...|+ ++..+|....+ . .+ .. ......++++.+|+|+.+.
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~~~~-~-------~~--~~-----~~~~l~ell~~aDiv~~~l 181 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRSYVN-D-------GI--SS-----IYMEPEDIMKKSDFVLISL 181 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcc-c-------Cc--cc-----ccCCHHHHHhhCCEEEECC
Confidence 57999999999999999999998888887 67777753211 0 00 00 0124567889999988776
Q ss_pred C-ChHhHHHHHHHHHH---cCCcEEEEc
Q 013384 169 D-NAPSRYMISDCCVV---LGKPLVSGA 192 (444)
Q Consensus 169 D-~~~~r~~i~~~~~~---~~~p~i~~~ 192 (444)
. +++++..++..... .+.-+|+.+
T Consensus 182 p~t~~T~~li~~~~l~~mk~ga~lIN~s 209 (303)
T PRK06436 182 PLTDETRGMINSKMLSLFRKGLAIINVA 209 (303)
T ss_pred CCCchhhcCcCHHHHhcCCCCeEEEECC
Confidence 4 66788777754333 233466654
No 151
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.22 E-value=0.0097 Score=58.32 Aligned_cols=77 Identities=25% Similarity=0.378 Sum_probs=55.8
Q ss_pred HhhhcCcEEEECCCc-cHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 89 SNLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 89 ~~L~~~~VlIvG~Gg-lGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
..+++++|+|+|.|+ +|.+++..|...|. ++++++. ...+..+.++++|+||.|
T Consensus 155 i~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~------------------------~t~~L~~~~~~aDIvI~A 209 (283)
T PRK14192 155 IELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHS------------------------RTQNLPELVKQADIIVGA 209 (283)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeC------------------------CchhHHHHhccCCEEEEc
Confidence 357899999999999 99999999999998 8888653 123445666899999999
Q ss_pred cCChHhHHHHHHHHHHcCCcEEEEcc
Q 013384 168 TDNAPSRYMISDCCVVLGKPLVSGAA 193 (444)
Q Consensus 168 ~D~~~~r~~i~~~~~~~~~p~i~~~~ 193 (444)
+..+. .+.....+.+.-+++.+.
T Consensus 210 tG~~~---~v~~~~lk~gavViDvg~ 232 (283)
T PRK14192 210 VGKPE---LIKKDWIKQGAVVVDAGF 232 (283)
T ss_pred cCCCC---cCCHHHcCCCCEEEEEEE
Confidence 96443 232223444555666653
No 152
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.21 E-value=0.029 Score=58.92 Aligned_cols=94 Identities=14% Similarity=0.157 Sum_probs=69.1
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
..|++++|+|||.|.++..=++.|..+|. ++++|-.+.-+ .+..+...-+++.....+. .+.+.++++||.||
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~~--~~~~l~~~~~i~~~~~~~~----~~dl~~~~lv~~at 80 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFIP--QFTAWADAGMLTLVEGPFD----ESLLDTCWLAIAAT 80 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCCH--HHHHHHhCCCEEEEeCCCC----hHHhCCCEEEEECC
Confidence 37899999999999999998999999995 78888544221 1111211223555555444 34467899999999
Q ss_pred CChHhHHHHHHHHHHcCCcEE
Q 013384 169 DNAPSRYMISDCCVVLGKPLV 189 (444)
Q Consensus 169 D~~~~r~~i~~~~~~~~~p~i 189 (444)
|+.+.-..|.+.|...++++-
T Consensus 81 ~d~~~n~~i~~~a~~~~~lvN 101 (457)
T PRK10637 81 DDDAVNQRVSEAAEARRIFCN 101 (457)
T ss_pred CCHHHhHHHHHHHHHcCcEEE
Confidence 999999999999999988643
No 153
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.18 E-value=0.032 Score=53.90 Aligned_cols=87 Identities=23% Similarity=0.284 Sum_probs=58.8
Q ss_pred CcEEEECC-CccHHHHHHHHHHc-CCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCCh
Q 013384 94 SSILVIGA-GGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA 171 (444)
Q Consensus 94 ~~VlIvG~-GglGs~ia~~La~~-Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~ 171 (444)
-+|+|+|+ |.+|..++..+... ++.-..++|.+.-.. ... . .+... ...+..+++.++|+|||++ .+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~---~~~-~-----~~~i~-~~~dl~~ll~~~DvVid~t-~p 70 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL---VGQ-G-----ALGVA-ITDDLEAVLADADVLIDFT-TP 70 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc---ccc-C-----CCCcc-ccCCHHHhccCCCEEEECC-CH
Confidence 37999999 99999999988764 555556666553211 111 0 01111 1244556677899999999 55
Q ss_pred HhHHHHHHHHHHcCCcEEEE
Q 013384 172 PSRYMISDCCVVLGKPLVSG 191 (444)
Q Consensus 172 ~~r~~i~~~~~~~~~p~i~~ 191 (444)
..-..+...|.+.++|+|.+
T Consensus 71 ~~~~~~~~~al~~G~~vvig 90 (257)
T PRK00048 71 EATLENLEFALEHGKPLVIG 90 (257)
T ss_pred HHHHHHHHHHHHcCCCEEEE
Confidence 55578888999999999955
No 154
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.15 E-value=0.005 Score=61.09 Aligned_cols=70 Identities=23% Similarity=0.290 Sum_probs=47.7
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCC-cEEEeeCCccccccccc-c------c-CcceEEEEeecCCcccHHhhcCCCcEE
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHR-I------N-STVHIIEHREALRTSNALEILSQYEIV 164 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg-~i~lvD~D~V~~sNl~R-l------n-p~~~v~~~~~~~~~~~~~~~~~~~DvV 164 (444)
++|.|+|+|++|+.+|..|+..|+. +|.|+|.+.-....+.. + . ..+.+.. .+. +-+.++|+|
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~-------~~~-~~l~~aDIV 72 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA-------GDY-SDCKDADIV 72 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc-------CCH-HHhCCCCEE
Confidence 3799999999999999999999985 89999975432222222 1 1 1122211 112 235899999
Q ss_pred EEccCCh
Q 013384 165 VDATDNA 171 (444)
Q Consensus 165 i~~~D~~ 171 (444)
|.++..+
T Consensus 73 Iitag~~ 79 (306)
T cd05291 73 VITAGAP 79 (306)
T ss_pred EEccCCC
Confidence 9999865
No 155
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.09 E-value=0.033 Score=52.71 Aligned_cols=95 Identities=20% Similarity=0.270 Sum_probs=65.3
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-ccCcceEEEEeecCCcccH-Hhh-cCCCcEEEEccCC
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-INSTVHIIEHREALRTSNA-LEI-LSQYEIVVDATDN 170 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-lnp~~~v~~~~~~~~~~~~-~~~-~~~~DvVi~~~D~ 170 (444)
.+++|+|+|-+|..+|+.|+..|- .+.+||.|.-. +.+ +.......++....+..+. .+. +.++|+++.+|++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~---~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEER---VEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHH---HHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence 479999999999999999999985 56666655322 222 2223344555444444332 333 5889999999999
Q ss_pred hHhHHHHHHHHHH-cCCcEEEEc
Q 013384 171 APSRYMISDCCVV-LGKPLVSGA 192 (444)
Q Consensus 171 ~~~r~~i~~~~~~-~~~p~i~~~ 192 (444)
-..-..+-..+.+ +++|-+.+-
T Consensus 77 d~~N~i~~~la~~~~gv~~viar 99 (225)
T COG0569 77 DEVNSVLALLALKEFGVPRVIAR 99 (225)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEE
Confidence 7777766666655 789987654
No 156
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.08 E-value=0.01 Score=62.02 Aligned_cols=94 Identities=18% Similarity=0.197 Sum_probs=60.9
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccc-ccc-cccccCcceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE-LNN-MHRINSTVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~-~sN-l~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
.|++++|+|+|+|++|..+|+.|+..|. +++++|.+.-+ ..+ +.++ +...+..+..... .+.+..+|+||.+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l-~~~~~~~~~~~~~----~~~~~~~d~vv~~ 75 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQLKEALEEL-GELGIELVLGEYP----EEFLEGVDLVVVS 75 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHH-HhcCCEEEeCCcc----hhHhhcCCEEEEC
Confidence 3678999999999999999999999996 79999886422 111 1111 1111222222211 2445789999998
Q ss_pred cCChHhHHHHHHHHHHcCCcEEE
Q 013384 168 TDNAPSRYMISDCCVVLGKPLVS 190 (444)
Q Consensus 168 ~D~~~~r~~i~~~~~~~~~p~i~ 190 (444)
+....... +...|++.++|++.
T Consensus 76 ~g~~~~~~-~~~~a~~~~i~~~~ 97 (450)
T PRK14106 76 PGVPLDSP-PVVQAHKKGIEVIG 97 (450)
T ss_pred CCCCCCCH-HHHHHHHCCCcEEe
Confidence 87654433 44566777887775
No 157
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.03 E-value=0.012 Score=60.49 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=49.5
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
.+.+++|+|+|+|.+|..+++.+...|+ ++.++|.|..... ..+. .... .. ...+.+..+|+||+|+.
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~-~A~~-~G~~--~~-------~~~e~v~~aDVVI~atG 266 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICAL-QAAM-EGYE--VM-------TMEEAVKEGDIFVTTTG 266 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHH-HHHh-cCCE--Ec-------cHHHHHcCCCEEEECCC
Confidence 3678999999999999999999999999 6888887643211 0111 1111 11 11345678999999998
Q ss_pred ChH
Q 013384 170 NAP 172 (444)
Q Consensus 170 ~~~ 172 (444)
+..
T Consensus 267 ~~~ 269 (413)
T cd00401 267 NKD 269 (413)
T ss_pred CHH
Confidence 765
No 158
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=96.01 E-value=0.031 Score=55.46 Aligned_cols=80 Identities=14% Similarity=0.129 Sum_probs=55.1
Q ss_pred HHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 88 q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
...|++++|.|||.|.+|..+|++|..+|+ ++.+.|...-.. .... .... ...+..++++.+|+|+.+
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~~s~-~~A~-~~G~---------~v~sl~Eaak~ADVV~ll 78 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSF-EVAK-ADGF---------EVMSVSEAVRTAQVVQML 78 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcchhh-HHHH-HcCC---------EECCHHHHHhcCCEEEEe
Confidence 368999999999999999999999999998 566665321100 0000 0011 112466788999999988
Q ss_pred cCChHhHHHHHH
Q 013384 168 TDNAPSRYMISD 179 (444)
Q Consensus 168 ~D~~~~r~~i~~ 179 (444)
+-+..++..+++
T Consensus 79 LPd~~t~~V~~~ 90 (335)
T PRK13403 79 LPDEQQAHVYKA 90 (335)
T ss_pred CCChHHHHHHHH
Confidence 877777766664
No 159
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.99 E-value=0.012 Score=58.85 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=45.6
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
.|.+++|+|||+|-.|.-++++|...|+.+|++..... ....+... .....+++..+|+||.|
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~-------------~~~~~~~~--~~~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQ-------------LTLPYRTV--VREELSFQDPYDVIFFG 233 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCc-------------cccchhhh--hhhhhhcccCCCEEEEc
Confidence 48899999999999999999999999999999953221 11111110 01223566899999987
No 160
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.94 E-value=0.011 Score=57.37 Aligned_cols=104 Identities=13% Similarity=0.232 Sum_probs=70.2
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHc----CC------CcEEEeeCCcccccccccccCcceEEEEeec-CCcccHHhh
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAAC----GV------GRLGIVDHDVVELNNMHRINSTVHIIEHREA-LRTSNALEI 157 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~----Gv------g~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~-~~~~~~~~~ 157 (444)
.+|++.||+|+|+|+.|..+++.|..+ |+ ++|.++|.+-+=..+-..+++.-..-..... -...+..+.
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~ 100 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEV 100 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHH
Confidence 578899999999999999999999998 99 7999999876533321101111100000000 011356777
Q ss_pred cC--CCcEEEEccCC--hHhHHHHHHHHHHcCCcEEEEc
Q 013384 158 LS--QYEIVVDATDN--APSRYMISDCCVVLGKPLVSGA 192 (444)
Q Consensus 158 ~~--~~DvVi~~~D~--~~~r~~i~~~~~~~~~p~i~~~ 192 (444)
++ +.|++|.++.- .=+...|-.++.....|+|+.-
T Consensus 101 i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaL 139 (279)
T cd05312 101 VKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFAL 139 (279)
T ss_pred HHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence 77 88999988853 3456677778877788999763
No 161
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.94 E-value=0.0076 Score=57.15 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=35.9
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCC--cEEEeeCCc
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDV 127 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg--~i~lvD~D~ 127 (444)
.|++.+|+|+|+|+.|..++..|+..|+. +|.|+|.+-
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 58889999999999999999999999999 999999983
No 162
>PLN00203 glutamyl-tRNA reductase
Probab=95.93 E-value=0.0076 Score=63.92 Aligned_cols=78 Identities=21% Similarity=0.307 Sum_probs=53.3
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCC
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDN 170 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~ 170 (444)
|.+++|+|||+|..|..++++|...|+.++++++.+.-....+....+.+.+... ..++..+.+.++|+||.||..
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~----~~~dl~~al~~aDVVIsAT~s 339 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYK----PLDEMLACAAEADVVFTSTSS 339 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEee----cHhhHHHHHhcCCEEEEccCC
Confidence 6689999999999999999999999999999987643222222111122222211 113445667899999999865
Q ss_pred hH
Q 013384 171 AP 172 (444)
Q Consensus 171 ~~ 172 (444)
+.
T Consensus 340 ~~ 341 (519)
T PLN00203 340 ET 341 (519)
T ss_pred CC
Confidence 53
No 163
>PRK13243 glyoxylate reductase; Reviewed
Probab=95.89 E-value=0.011 Score=59.38 Aligned_cols=91 Identities=19% Similarity=0.172 Sum_probs=61.5
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|...-.. ... .. .....+..++++.+|+|+.++
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~~~--------~~--~~~~~~l~ell~~aDiV~l~l 212 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKPE--AEK--------EL--GAEYRPLEELLRESDFVSLHV 212 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCChh--hHH--------Hc--CCEecCHHHHHhhCCEEEEeC
Confidence 36899999999999999999999999997 677777532110 000 00 011134567889999998877
Q ss_pred C-ChHhHHHHHHHHHHc---CCcEEEEc
Q 013384 169 D-NAPSRYMISDCCVVL---GKPLVSGA 192 (444)
Q Consensus 169 D-~~~~r~~i~~~~~~~---~~p~i~~~ 192 (444)
- +.+++..+++..... +.-+|+.+
T Consensus 213 P~t~~T~~~i~~~~~~~mk~ga~lIN~a 240 (333)
T PRK13243 213 PLTKETYHMINEERLKLMKPTAILVNTA 240 (333)
T ss_pred CCChHHhhccCHHHHhcCCCCeEEEECc
Confidence 5 567888887654333 33466654
No 164
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.88 E-value=0.0071 Score=62.83 Aligned_cols=75 Identities=23% Similarity=0.282 Sum_probs=52.8
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCC
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDN 170 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~ 170 (444)
+.+++|+|+|+|.+|..++++|...|+.+++++|.+.-....+....+ .... ..++..+.+.++|+||.||..
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g---~~~~----~~~~~~~~l~~aDvVI~aT~s 252 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFG---GEAI----PLDELPEALAEADIVISSTGA 252 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC---CcEe----eHHHHHHHhccCCEEEECCCC
Confidence 788999999999999999999999999999998775422222222111 1111 113344566889999999976
Q ss_pred hH
Q 013384 171 AP 172 (444)
Q Consensus 171 ~~ 172 (444)
+.
T Consensus 253 ~~ 254 (423)
T PRK00045 253 PH 254 (423)
T ss_pred CC
Confidence 64
No 165
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=95.88 E-value=0.053 Score=45.33 Aligned_cols=76 Identities=14% Similarity=0.289 Sum_probs=39.3
Q ss_pred ccCHHHHHHHHhcCCCcEEEEecCcccccccCCCC--------------ceecCchhhh---hhhhhhHHHhhhhhhhcC
Q 013384 327 RISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPN--------------SINIPLSDLE---SRLPEISSAMKEKEEHRG 389 (444)
Q Consensus 327 ~Is~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpg--------------AiniP~~~l~---~~~~~l~~~~~~~~~~~~ 389 (444)
.|+++++.++-+.|- -.||+.|+..|=. +-|. -+++|+..-. +....+.+.+...
T Consensus 14 Q~~~~d~~~la~~Gf-ktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~----- 85 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGF-KTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESL----- 85 (110)
T ss_dssp S--HHHHHHHHHCT---EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTT-----
T ss_pred CCCHHHHHHHHHCCC-cEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhC-----
Confidence 578999999888763 3799999876521 1121 2567764321 1133333333322
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHH
Q 013384 390 SNASSGSNLYVVCRRGNDSQRAVQAL 415 (444)
Q Consensus 390 ~~~~~~~~Ivv~C~~G~~S~~aa~~L 415 (444)
++||++||++|+||...+..-
T Consensus 86 -----~~Pvl~hC~sG~Ra~~l~~l~ 106 (110)
T PF04273_consen 86 -----PKPVLAHCRSGTRASALWALA 106 (110)
T ss_dssp -----TTSEEEE-SCSHHHHHHHHHH
T ss_pred -----CCCEEEECCCChhHHHHHHHH
Confidence 379999999999986665543
No 166
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.87 E-value=0.028 Score=55.27 Aligned_cols=92 Identities=17% Similarity=0.240 Sum_probs=55.7
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc--ccC-cceEEEEeecCCcccHHhhcCCCcEEEEccCCh
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--INS-TVHIIEHREALRTSNALEILSQYEIVVDATDNA 171 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R--lnp-~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~ 171 (444)
+|+|+|+|.+|+.++..|+.+|. +++++|.+.-....+.+ ++. .-... ...... .+..+. .++|+||.|+...
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~~~~~~~-~~~~~~-~~~~~~-~~~d~vila~k~~ 77 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRLEDGEIT-VPVLAA-DDPAEL-GPQDLVILAVKAY 77 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcccCCcee-ecccCC-CChhHc-CCCCEEEEecccc
Confidence 69999999999999999999984 79999874311111111 111 00100 000111 222333 7899999999988
Q ss_pred HhHHHHHHHHHHc--CCcEEE
Q 013384 172 PSRYMISDCCVVL--GKPLVS 190 (444)
Q Consensus 172 ~~r~~i~~~~~~~--~~p~i~ 190 (444)
.....+....... +..+|+
T Consensus 78 ~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 78 QLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred cHHHHHHHHhhhcCCCCEEEE
Confidence 7776666665432 234554
No 167
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=95.85 E-value=0.017 Score=57.41 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=60.3
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEE-EEc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIV-VDA 167 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvV-i~~ 167 (444)
..+++++|.|+|+|.+|..+|+.|-..| -.|.- ++..+.-|....+.+.. .....+++.++|+| +.|
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y--------~~r~~~~~~~~~~~~~~---~~d~~~~~~~sD~ivv~~ 225 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILY--------HSRTQLPPEEAYEYYAE---FVDIEELLANSDVIVVNC 225 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeee--------ecccCCchhhHHHhccc---ccCHHHHHhhCCEEEEec
Confidence 5899999999999999999999998866 33322 22222112222122222 34556777889965 567
Q ss_pred cCChHhHHHHHHHHHHc---CCcEEEEc
Q 013384 168 TDNAPSRYMISDCCVVL---GKPLVSGA 192 (444)
Q Consensus 168 ~D~~~~r~~i~~~~~~~---~~p~i~~~ 192 (444)
-.+..++-.+|...... +.-+|+.+
T Consensus 226 pLt~~T~~liNk~~~~~mk~g~vlVN~a 253 (336)
T KOG0069|consen 226 PLTKETRHLINKKFIEKMKDGAVLVNTA 253 (336)
T ss_pred CCCHHHHHHhhHHHHHhcCCCeEEEecc
Confidence 78999999999876543 33455544
No 168
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=95.83 E-value=0.017 Score=57.80 Aligned_cols=148 Identities=16% Similarity=0.174 Sum_probs=86.5
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
.|.+++|.|||+|.+|+.+|+.|...|+ ++..+|.-.-.. ......-....+..++++.+|+|+..+-
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm-~v~~~d~~~~~~-----------~~~~~~~~~~~~Ld~lL~~sDiv~lh~P 206 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGM-KVIGYDPYSPRE-----------RAGVDGVVGVDSLDELLAEADILTLHLP 206 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCC-eEEEECCCCchh-----------hhccccceecccHHHHHhhCCEEEEcCC
Confidence 6889999999999999999999999998 444444311100 0011111122557889999999887664
Q ss_pred -ChHhHHHHHHHHHHc---CCcEEEEcccCC-----------cceEEEEeCCCCCceeecCCCCCCCccCCccc------
Q 013384 170 -NAPSRYMISDCCVVL---GKPLVSGAALGL-----------EGQLTVYNYNGGPCYRCLFPTPPPTTACQRCA------ 228 (444)
Q Consensus 170 -~~~~r~~i~~~~~~~---~~p~i~~~~~g~-----------~G~l~~~~~~~~~C~~C~~~~~~~~~~~~~c~------ 228 (444)
++++|-.|+...... +.-+|+++=.+. .|++. +.-. -.|+..|.+...+-..
T Consensus 207 lT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~------gA~l-DVf~~EPl~~~~pL~~~pnV~~ 279 (324)
T COG0111 207 LTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIA------GAAL-DVFEEEPLPADSPLWDLPNVIL 279 (324)
T ss_pred CCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcc------eEEe-cCCCCCCCCCCChhhcCCCeEE
Confidence 678998888765443 334666542111 12221 1112 2344333333222111
Q ss_pred ---CCCcccchhHHHHHHHHHHHHHHHhcCC
Q 013384 229 ---DSGVLGVVPGIIGCLQALEAIKVASAVG 256 (444)
Q Consensus 229 ---~~~~~~~~~~i~g~l~a~e~lk~l~g~~ 256 (444)
.+++..-...-++-+.+.++.+++.|..
T Consensus 280 TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~ 310 (324)
T COG0111 280 TPHIGGSTDEAQERVAEIVAENIVRYLAGGP 310 (324)
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 1222223345688888888999998875
No 169
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.80 E-value=0.022 Score=56.43 Aligned_cols=98 Identities=27% Similarity=0.275 Sum_probs=65.2
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCC--cccccccccccC-cceEEEEeecCC-cccHHhhcCCCcEEEEccC
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD--VVELNNMHRINS-TVHIIEHREALR-TSNALEILSQYEIVVDATD 169 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D--~V~~sNl~Rlnp-~~~v~~~~~~~~-~~~~~~~~~~~DvVi~~~D 169 (444)
.+|.|+|+|+.|+.+|..|++.| ..+.+...| .++.=|-.|.|+ +..-...+..+. ..+..+.++++|+|+-++.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence 58999999999999999999999 566666554 444333334343 221111222222 2456677788999999999
Q ss_pred ChHhHHHHHHH--HHHcCCcEEEEc
Q 013384 170 NAPSRYMISDC--CVVLGKPLVSGA 192 (444)
Q Consensus 170 ~~~~r~~i~~~--~~~~~~p~i~~~ 192 (444)
+...|..+.++ ....+.++|++.
T Consensus 81 s~~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 81 SQALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred hHHHHHHHHHHhhhccCCCeEEEEe
Confidence 98888777765 334566777764
No 170
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.65 E-value=0.035 Score=48.60 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=52.9
Q ss_pred EEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-----ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCC
Q 013384 96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-----INSTVHIIEHREALRTSNALEILSQYEIVVDATDN 170 (444)
Q Consensus 96 VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-----lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~ 170 (444)
|+|+|+|++|+.+|..|..+|. ++++++... ....+.+ ..+.-+......... .........+|+||.|+=.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~viv~vKa 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVI-SAPSADAGPYDLVIVAVKA 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEE-SSHGHHHSTESEEEE-SSG
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecccceeccccccc-CcchhccCCCcEEEEEecc
Confidence 7899999999999999999876 588888766 3333333 112211111111111 1112344789999999988
Q ss_pred hHhHHHHHHHHH
Q 013384 171 APSRYMISDCCV 182 (444)
Q Consensus 171 ~~~r~~i~~~~~ 182 (444)
......+..+..
T Consensus 78 ~~~~~~l~~l~~ 89 (151)
T PF02558_consen 78 YQLEQALQSLKP 89 (151)
T ss_dssp GGHHHHHHHHCT
T ss_pred cchHHHHHHHhh
Confidence 888877777543
No 171
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.62 E-value=0.036 Score=56.30 Aligned_cols=97 Identities=12% Similarity=0.095 Sum_probs=63.2
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCC------CcEEEeeCCc-------cccccccccc----CcceEEEEeecCC-ccc
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGV------GRLGIVDHDV-------VELNNMHRIN----STVHIIEHREALR-TSN 153 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gv------g~i~lvD~D~-------V~~sNl~Rln----p~~~v~~~~~~~~-~~~ 153 (444)
...+|.|+|+|..|+.+|..|+..|. .++.+...|. ++.-|-+|.| |.++. +..+. ..+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~L---p~ni~~tsd 86 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKL---PDNIVAVSD 86 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcC---CCceEEecC
Confidence 34589999999999999999999873 3677765554 3333333333 33321 22221 123
Q ss_pred HHhhcCCCcEEEEccCChHhHHHHHHHHH----HcCCcEEEE
Q 013384 154 ALEILSQYEIVVDATDNAPSRYMISDCCV----VLGKPLVSG 191 (444)
Q Consensus 154 ~~~~~~~~DvVi~~~D~~~~r~~i~~~~~----~~~~p~i~~ 191 (444)
..+.++++|+||-++-+...+..+.+... ..+.++|++
T Consensus 87 l~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~ 128 (365)
T PTZ00345 87 LKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISL 128 (365)
T ss_pred HHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEE
Confidence 45677899999999998888877776642 224467765
No 172
>PRK04148 hypothetical protein; Provisional
Probab=95.61 E-value=0.049 Score=47.13 Aligned_cols=93 Identities=14% Similarity=0.197 Sum_probs=68.0
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCCh
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA 171 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~ 171 (444)
++.+|++||+| .|..+|..|+..|. .++.+|-+.-...+.... .++.....+. +...++.+++|+|-.+--.+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~----~~~~v~dDlf-~p~~~~y~~a~liysirpp~ 88 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL----GLNAFVDDLF-NPNLEIYKNAKLIYSIRPPR 88 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh----CCeEEECcCC-CCCHHHHhcCCEEEEeCCCH
Confidence 44689999999 99999999999995 888888655432222111 1233333333 22356678999999888888
Q ss_pred HhHHHHHHHHHHcCCcEEEE
Q 013384 172 PSRYMISDCCVVLGKPLVSG 191 (444)
Q Consensus 172 ~~r~~i~~~~~~~~~p~i~~ 191 (444)
+....|-+.+.+.+.+++--
T Consensus 89 el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 89 DLQPFILELAKKINVPLIIK 108 (134)
T ss_pred HHHHHHHHHHHHcCCCEEEE
Confidence 88889999999999998864
No 173
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.60 E-value=0.022 Score=59.90 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=69.8
Q ss_pred hhccccCCCCCHHHHHhhhcCcEEEECCCc-cHHHHHHHHHHcCCCcEEEeeCCccccccccc----ccCcceEEEEeec
Q 013384 74 YSRHLLLPSFGVEGQSNLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHR----INSTVHIIEHREA 148 (444)
Q Consensus 74 y~Rq~~l~~~g~~~q~~L~~~~VlIvG~Gg-lGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R----lnp~~~v~~~~~~ 148 (444)
..|+-.-+++ ..-+.-+.+++|+|-|+|| +|+++++.++..+.++|.++|.|......+.+ ..|..++..+-..
T Consensus 232 LgR~pV~~d~-~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igd 310 (588)
T COG1086 232 LGRPPVALDT-ELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGD 310 (588)
T ss_pred hCCCCCCCCH-HHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecc
Confidence 3555433222 3456789999999999877 79999999999999999999999988776665 5566777777766
Q ss_pred CCc-ccHHhhcCC--CcEEEEcc
Q 013384 149 LRT-SNALEILSQ--YEIVVDAT 168 (444)
Q Consensus 149 ~~~-~~~~~~~~~--~DvVi~~~ 168 (444)
+.+ +.....+++ .|+|+-|.
T Consensus 311 VrD~~~~~~~~~~~kvd~VfHAA 333 (588)
T COG1086 311 VRDRDRVERAMEGHKVDIVFHAA 333 (588)
T ss_pred cccHHHHHHHHhcCCCceEEEhh
Confidence 654 334555666 78888553
No 174
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.45 E-value=0.024 Score=58.30 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=56.7
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCC
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDN 170 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~ 170 (444)
+.+++|+|+|+|.+|..+++.|...|. ++.++|.|.....- .+.. ...+ . +..+.+..+|+||+++.+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~-A~~~-G~~v--~-------~leeal~~aDVVItaTG~ 260 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALE-AAMD-GFRV--M-------TMEEAAKIGDIFITATGN 260 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHH-HHhc-CCEe--C-------CHHHHHhcCCEEEECCCC
Confidence 689999999999999999999999998 58888876542110 0110 1111 1 123456789999999876
Q ss_pred hHhHHHHHHH---HHHcCCcEEEEcc
Q 013384 171 APSRYMISDC---CVVLGKPLVSGAA 193 (444)
Q Consensus 171 ~~~r~~i~~~---~~~~~~p~i~~~~ 193 (444)
.. .++.. ..+.+.-+++++.
T Consensus 261 ~~---vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 261 KD---VIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred HH---HHHHHHHhcCCCCcEEEEECC
Confidence 44 33332 2334445666553
No 175
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.44 E-value=0.042 Score=51.08 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=32.5
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.|++++|+|+|.|.+|..+++.|...|. ++.++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 5788999999999999999999999997 77788865
No 176
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.43 E-value=0.055 Score=53.68 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=53.6
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHh
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPS 173 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~ 173 (444)
.+|.|+|+|.+|+.++..|+..|. +++++|.+.- .+..+.++++|+||.|+-+...
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~~~-----------------------~~~~~~~~~advvi~~vp~~~~ 60 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGH-RVRVWSRRSG-----------------------LSLAAVLADADVIVSAVSMKGV 60 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-EEEEEeCCCC-----------------------CCHHHHHhcCCEEEEECChHHH
Confidence 479999999999999999999995 6777664321 2344566789999999887766
Q ss_pred HHHHHHHHH---HcCCcEEEEc
Q 013384 174 RYMISDCCV---VLGKPLVSGA 192 (444)
Q Consensus 174 r~~i~~~~~---~~~~p~i~~~ 192 (444)
+..+..... ..++.+|+.+
T Consensus 61 ~~v~~~l~~~~~~~~~ivi~~s 82 (308)
T PRK14619 61 RPVAEQVQALNLPPETIIVTAT 82 (308)
T ss_pred HHHHHHHHHhcCCCCcEEEEeC
Confidence 666655432 2245566643
No 177
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.43 E-value=0.018 Score=57.45 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=33.5
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
.+..||.|||+|.+|+.++..|+..|+.++.|+|-|.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 4678999999999999999999999988999999764
No 178
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.36 E-value=0.019 Score=58.60 Aligned_cols=73 Identities=15% Similarity=0.283 Sum_probs=49.8
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-ccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-INSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
+..++|+|+|+|.+|..+++.|.+.|+ ++.++|.+.-....+.+ +... +.. .....+...+.+..+|+||+|+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~~--v~~--~~~~~~~l~~~l~~aDvVI~a~ 238 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGGR--IHT--RYSNAYEIEDAVKRADLLIGAV 238 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCce--eEe--ccCCHHHHHHHHccCCEEEEcc
Confidence 577889999999999999999999998 69999976422211111 1111 111 1112234566778999999997
No 179
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.35 E-value=0.022 Score=45.24 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=32.5
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeC
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~ 125 (444)
.++.++|+|+|+|..|..++.+|...|..++.++|.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 478899999999999999999999998788888765
No 180
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.34 E-value=0.019 Score=56.65 Aligned_cols=72 Identities=18% Similarity=0.281 Sum_probs=50.0
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
.+.+++|+|+|+|++|..++..|.+.|. +++++|.+.-.......+ ..+ .. ..++..+.+.++|+||+|+.
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~--G~~--~~----~~~~l~~~l~~aDiVI~t~p 219 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEM--GLS--PF----HLSELAEEVGKIDIIFNTIP 219 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc--CCe--ee----cHHHHHHHhCCCCEEEECCC
Confidence 3578999999999999999999999997 999998764321111101 111 11 11344567789999999874
Q ss_pred C
Q 013384 170 N 170 (444)
Q Consensus 170 ~ 170 (444)
.
T Consensus 220 ~ 220 (296)
T PRK08306 220 A 220 (296)
T ss_pred h
Confidence 3
No 181
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=95.33 E-value=0.038 Score=56.31 Aligned_cols=87 Identities=15% Similarity=0.190 Sum_probs=59.0
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
.|++++|.|||+|.+|+.+|+.|...|+ ++..+|.-..+. . ......+..++++.+|+|+.++-
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~-~V~~~dp~~~~~--------~-------~~~~~~~L~ell~~sDiI~lh~P 176 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGI-KTLLCDPPRADR--------G-------DEGDFRSLDELVQEADILTFHTP 176 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCccccc--------c-------cccccCCHHHHHhhCCEEEEeCC
Confidence 5899999999999999999999999998 555666421110 0 00112356788899999986654
Q ss_pred -Ch----HhHHHHHHHHHH---cCCcEEEEc
Q 013384 170 -NA----PSRYMISDCCVV---LGKPLVSGA 192 (444)
Q Consensus 170 -~~----~~r~~i~~~~~~---~~~p~i~~~ 192 (444)
+. +++.++++.... .+.-+|+++
T Consensus 177 Lt~~g~~~T~~li~~~~l~~mk~gailIN~a 207 (378)
T PRK15438 177 LFKDGPYKTLHLADEKLIRSLKPGAILINAC 207 (378)
T ss_pred CCCCcccccccccCHHHHhcCCCCcEEEECC
Confidence 22 377777765443 344577754
No 182
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.33 E-value=0.093 Score=52.64 Aligned_cols=102 Identities=12% Similarity=0.118 Sum_probs=62.7
Q ss_pred CcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCC-c-ccHHhhcCCCcEEEEccC-
Q 013384 94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALR-T-SNALEILSQYEIVVDATD- 169 (444)
Q Consensus 94 ~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~-~-~~~~~~~~~~DvVi~~~D- 169 (444)
.+|+|.|+ |-+|+++++.|...|=-++..+|.+. .++.++.+.-.++.+...+. + +...++++++|+||.+..
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~---~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~aa~ 78 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQT---DRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLVAI 78 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcH---HHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECccc
Confidence 36999997 67999999999886423788777543 22333333333555555554 2 233456788999997632
Q ss_pred --------ChH--------hHHHHHHHHHHcCCcEEEEcccCCcc
Q 013384 170 --------NAP--------SRYMISDCCVVLGKPLVSGAALGLEG 198 (444)
Q Consensus 170 --------~~~--------~r~~i~~~~~~~~~p~i~~~~~g~~G 198 (444)
++. .-..+-++|++.+..+|+.++...+|
T Consensus 79 ~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg 123 (347)
T PRK11908 79 ATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYG 123 (347)
T ss_pred CChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeec
Confidence 111 11234566777778888877654433
No 183
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=95.20 E-value=0.062 Score=54.17 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=60.4
Q ss_pred cEEEECCCccHHHHHHHHHHcCC-------CcEEEeeCCc-------ccccccccccC----cceEEEEeecCC-cccHH
Q 013384 95 SILVIGAGGLGSPALLYLAACGV-------GRLGIVDHDV-------VELNNMHRINS----TVHIIEHREALR-TSNAL 155 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gv-------g~i~lvD~D~-------V~~sNl~Rlnp----~~~v~~~~~~~~-~~~~~ 155 (444)
+|.|+|+|..|+.+|..|+..|. .++++...+. ++.-|-.|.|+ .++ .+..+. ..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~---Lp~~i~at~dl~ 77 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIK---LPANLVAVPDLV 77 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCc---CCCCeEEECCHH
Confidence 68999999999999999999882 5788886532 11112222222 221 111111 13455
Q ss_pred hhcCCCcEEEEccCChHhHHHHHHHH--HHcCCcEEEE
Q 013384 156 EILSQYEIVVDATDNAPSRYMISDCC--VVLGKPLVSG 191 (444)
Q Consensus 156 ~~~~~~DvVi~~~D~~~~r~~i~~~~--~~~~~p~i~~ 191 (444)
+.++++|+||-++-+...+..+.+.. ...+.++|++
T Consensus 78 eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~ 115 (342)
T TIGR03376 78 EAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISC 115 (342)
T ss_pred HHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEE
Confidence 67789999999998887777666653 2345677775
No 184
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.19 E-value=0.024 Score=52.22 Aligned_cols=81 Identities=17% Similarity=0.230 Sum_probs=51.6
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCccccccccc-cc--CcceEEEEeecCCcccHHhhcCCCcEEE
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-IN--STVHIIEHREALRTSNALEILSQYEIVV 165 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-ln--p~~~v~~~~~~~~~~~~~~~~~~~DvVi 165 (444)
.+++++|+|+|+ |++|..+++.|+..| .++.+++.+.-....+.. +. ....+...+ ..+.++..+.++++|+||
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRDLERAQKAADSLRARFGEGVGAVE-TSDDAARAAAIKGADVVF 102 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhhcCCcEEEee-CCCHHHHHHHHhcCCEEE
Confidence 467899999996 999999999999988 489998765321111111 21 122233221 112234456678899999
Q ss_pred EccCChH
Q 013384 166 DATDNAP 172 (444)
Q Consensus 166 ~~~D~~~ 172 (444)
.++....
T Consensus 103 ~at~~g~ 109 (194)
T cd01078 103 AAGAAGV 109 (194)
T ss_pred ECCCCCc
Confidence 8886543
No 185
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.15 E-value=0.086 Score=52.90 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=61.0
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
..|++++|.|||+|.+|..+|+.|...|. ++..+|...-.. .... .. ..+..++++.+|+|+.++
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~~------~~~~-------~~-~~~l~ell~~aDiVil~l 206 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNKD------LDFL-------TY-KDSVKEAIKDADIISLHV 206 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhHh------hhhh-------hc-cCCHHHHHhcCCEEEEeC
Confidence 36899999999999999999999999886 677777542110 0000 01 134567889999999887
Q ss_pred CCh-HhHHHHHHHHHH---cCCcEEEEc
Q 013384 169 DNA-PSRYMISDCCVV---LGKPLVSGA 192 (444)
Q Consensus 169 D~~-~~r~~i~~~~~~---~~~p~i~~~ 192 (444)
... .++..+++.... .+..+|+.+
T Consensus 207 P~t~~t~~li~~~~l~~mk~gavlIN~a 234 (330)
T PRK12480 207 PANKESYHLFDKAMFDHVKKGAILVNAA 234 (330)
T ss_pred CCcHHHHHHHhHHHHhcCCCCcEEEEcC
Confidence 644 567777765443 344577765
No 186
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.15 E-value=0.21 Score=40.57 Aligned_cols=81 Identities=14% Similarity=0.187 Sum_probs=56.1
Q ss_pred cEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcc--cHHhhcCCCcEEEEccCCh
Q 013384 95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTS--NALEILSQYEIVVDATDNA 171 (444)
Q Consensus 95 ~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~--~~~~~~~~~DvVi~~~D~~ 171 (444)
+|+|||. ...-..+-..+-..|...+.. .. +...... .....+.++|+||..||..
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h-g~--------------------~~~~~~~~~~l~~~i~~aD~VIv~t~~v 59 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHH-GR--------------------DGGDEKKASRLPSKIKKADLVIVFTDYV 59 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEE-ec--------------------CCCCccchhHHHHhcCCCCEEEEEeCCc
Confidence 5889987 455666777777888643332 00 1122222 2566778999999999966
Q ss_pred --HhHHHHHHHHHHcCCcEEEEcccCC
Q 013384 172 --PSRYMISDCCVVLGKPLVSGAALGL 196 (444)
Q Consensus 172 --~~r~~i~~~~~~~~~p~i~~~~~g~ 196 (444)
.....+-+.|.+.++|++.+...++
T Consensus 60 sH~~~~~vk~~akk~~ip~~~~~~~~~ 86 (97)
T PF10087_consen 60 SHNAMWKVKKAAKKYGIPIIYSRSRGV 86 (97)
T ss_pred ChHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 5677899999999999998764443
No 187
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.13 E-value=0.053 Score=53.76 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=53.8
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCc--ccccccccccCcceEEEEee----cCCcccHHhhcCCCcEEEEc
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV--VELNNMHRINSTVHIIEHRE----ALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~--V~~sNl~Rlnp~~~v~~~~~----~~~~~~~~~~~~~~DvVi~~ 167 (444)
.+|+|+|+|++|+.++-+|+++|. .+++++... ++. +.+ +..+.+..... .+.... .+....+|+||.|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~--i~~-~~Gl~i~~~g~~~~~~~~~~~-~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAA--YQQ-AGGLTLVEQGQASLYAIPAET-ADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHH--Hhh-cCCeEEeeCCcceeeccCCCC-cccccccCEEEEE
Confidence 479999999999999999999995 788988743 221 111 01111111100 111111 1224689999999
Q ss_pred cCChHhHHHHHHHHH--HcCCcEEEE
Q 013384 168 TDNAPSRYMISDCCV--VLGKPLVSG 191 (444)
Q Consensus 168 ~D~~~~r~~i~~~~~--~~~~p~i~~ 191 (444)
+=...+...+..+.. ..+.++|..
T Consensus 78 vK~~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 78 CKAYDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred CCHHhHHHHHHHHHhhCCCCCEEEEE
Confidence 887766555544432 234445543
No 188
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.12 E-value=0.18 Score=49.06 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=59.8
Q ss_pred cEEEEC-CCccHHHHHHHHHH-cCCCcEEEee-CCccc-ccccccccCc--ceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 95 SILVIG-AGGLGSPALLYLAA-CGVGRLGIVD-HDVVE-LNNMHRINST--VHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 95 ~VlIvG-~GglGs~ia~~La~-~Gvg~i~lvD-~D~V~-~sNl~Rlnp~--~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
+|+|+| +|..|..+++.+.. .++.-+.++| .+.-. ..++..+... ..+..+ .+..++...+|+|||+|
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~------~d~~~l~~~~DvVIdfT 76 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVT------DDLEAVETDPDVLIDFT 76 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceee------CCHHHhcCCCCEEEECC
Confidence 799999 59999999999886 5777777777 32211 1122221100 011111 22333335689999999
Q ss_pred CChHhHHHHHHHHHHcCCcEEEEcc
Q 013384 169 DNAPSRYMISDCCVVLGKPLVSGAA 193 (444)
Q Consensus 169 D~~~~r~~i~~~~~~~~~p~i~~~~ 193 (444)
.+..-..+-..|.++++|+|.+.+
T Consensus 77 -~p~~~~~~~~~al~~g~~vVigtt 100 (266)
T TIGR00036 77 -TPEGVLNHLKFALEHGVRLVVGTT 100 (266)
T ss_pred -ChHHHHHHHHHHHHCCCCEEEECC
Confidence 667777788899999999998754
No 189
>PRK13529 malate dehydrogenase; Provisional
Probab=95.11 E-value=0.086 Score=55.89 Aligned_cols=122 Identities=16% Similarity=0.242 Sum_probs=79.0
Q ss_pred HHHhhhhccccCCCCCHHHH------------------HhhhcCcEEEECCCccHHHHHHHHHH----cCC------CcE
Q 013384 69 DMIYRYSRHLLLPSFGVEGQ------------------SNLLKSSILVIGAGGLGSPALLYLAA----CGV------GRL 120 (444)
Q Consensus 69 ~~~~ry~Rq~~l~~~g~~~q------------------~~L~~~~VlIvG~GglGs~ia~~La~----~Gv------g~i 120 (444)
.-++||..++.. |..+-| .+|++.+|+++|+|+.|..+|+.|.. .|+ .+|
T Consensus 255 ~iL~ryr~~i~~--FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i 332 (563)
T PRK13529 255 RILERYRDEICT--FNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRF 332 (563)
T ss_pred HHHHHhccCCCe--eccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeE
Confidence 446788776655 643322 57899999999999999999999987 699 599
Q ss_pred EEeeCCccccc---cccc-ccCcceEE----EEeecCCcccHHhhcCCC--cEEEEccCC--hHhHHHHHHHHHHcCCcE
Q 013384 121 GIVDHDVVELN---NMHR-INSTVHII----EHREALRTSNALEILSQY--EIVVDATDN--APSRYMISDCCVVLGKPL 188 (444)
Q Consensus 121 ~lvD~D~V~~s---Nl~R-lnp~~~v~----~~~~~~~~~~~~~~~~~~--DvVi~~~D~--~~~r~~i~~~~~~~~~p~ 188 (444)
.++|.+-+=.. +|+. .-+..+-. .....-...+..+.++.. |++|.++-- .=+...|..++.....|+
T Consensus 333 ~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPI 412 (563)
T PRK13529 333 FMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPI 412 (563)
T ss_pred EEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCE
Confidence 99999854332 2322 11111110 000000113556777766 999988763 235667777887778899
Q ss_pred EEEc
Q 013384 189 VSGA 192 (444)
Q Consensus 189 i~~~ 192 (444)
|++-
T Consensus 413 IFaL 416 (563)
T PRK13529 413 IFPL 416 (563)
T ss_pred EEEC
Confidence 9763
No 190
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.10 E-value=0.042 Score=53.58 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=32.2
Q ss_pred cCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
+++|+|+|+||.+..++..|+..|+.+|+|++.+.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 35899999999999999999999999999998764
No 191
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=95.10 E-value=0.12 Score=51.66 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=51.7
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
..|++++|.|||+|..|..+|++|..+|+ ++.+.+...-......+ ...+ ...+..+.++.+|+|+.++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~r~~~~s~~~A~-~~G~---------~~~s~~eaa~~ADVVvLaV 81 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLREGSKSWKKAE-ADGF---------EVLTVAEAAKWADVIMILL 81 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEECCchhhHHHHH-HCCC---------eeCCHHHHHhcCCEEEEcC
Confidence 46889999999999999999999999998 55554432111000000 0111 1124566778999999998
Q ss_pred CChHhHHHH
Q 013384 169 DNAPSRYMI 177 (444)
Q Consensus 169 D~~~~r~~i 177 (444)
-+......+
T Consensus 82 Pd~~~~~V~ 90 (330)
T PRK05479 82 PDEVQAEVY 90 (330)
T ss_pred CHHHHHHHH
Confidence 766665555
No 192
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.09 E-value=0.035 Score=54.56 Aligned_cols=72 Identities=19% Similarity=0.337 Sum_probs=49.6
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
.|.+++|+|+|+|++|..+++.|...|. +++++|.+.- .+.+... ..... +..++..+.+.++|+||.|+.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~---~~~~~~~-~g~~~----~~~~~l~~~l~~aDiVint~P 218 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSA---DLARITE-MGLIP----FPLNKLEEKVAEIDIVINTIP 218 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHH---HHHHHHH-CCCee----ecHHHHHHHhccCCEEEECCC
Confidence 5778999999999999999999999997 8999876432 1111100 00111 112344567789999999984
Q ss_pred C
Q 013384 170 N 170 (444)
Q Consensus 170 ~ 170 (444)
.
T Consensus 219 ~ 219 (287)
T TIGR02853 219 A 219 (287)
T ss_pred h
Confidence 3
No 193
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=95.08 E-value=0.044 Score=55.97 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=59.6
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
..|++++|.|||+|.+|+.+++.|...|+ ++..+|...-... ......+..++++++|+|+.++
T Consensus 112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~-~V~~~Dp~~~~~~---------------~~~~~~~l~ell~~aDiV~lh~ 175 (381)
T PRK00257 112 VDLAERTYGVVGAGHVGGRLVRVLRGLGW-KVLVCDPPRQEAE---------------GDGDFVSLERILEECDVISLHT 175 (381)
T ss_pred CCcCcCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCcccccc---------------cCccccCHHHHHhhCCEEEEeC
Confidence 36899999999999999999999999998 5666664221100 0011124667888999998776
Q ss_pred CC-h----HhHHHHHHHHHHc---CCcEEEEc
Q 013384 169 DN-A----PSRYMISDCCVVL---GKPLVSGA 192 (444)
Q Consensus 169 D~-~----~~r~~i~~~~~~~---~~p~i~~~ 192 (444)
-. . +++.++++..... +.-+|+++
T Consensus 176 Plt~~g~~~T~~li~~~~l~~mk~gailIN~a 207 (381)
T PRK00257 176 PLTKEGEHPTRHLLDEAFLASLRPGAWLINAS 207 (381)
T ss_pred cCCCCccccccccCCHHHHhcCCCCeEEEECC
Confidence 53 2 4777777654433 33466654
No 194
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=95.05 E-value=0.13 Score=44.57 Aligned_cols=79 Identities=11% Similarity=0.202 Sum_probs=47.2
Q ss_pred CccCHHHHHHHHhcCCCcEEEEecCcccccccC----------CCCc--eecCchh--hh-hhhhhhHHHhhhhhhhcCC
Q 013384 326 SRISSKEYKEKVVNGEAHILVDVRPAHHFRIVS----------LPNS--INIPLSD--LE-SRLPEISSAMKEKEEHRGS 390 (444)
Q Consensus 326 ~~Is~~el~~~l~~~~~~~lIDVR~~~ef~~gh----------IpgA--iniP~~~--l~-~~~~~l~~~~~~~~~~~~~ 390 (444)
..++.+++..+.+.+- -.|||.|+..|-.... -+|- +++|+.. +. .....+...+..
T Consensus 13 ~qlt~~d~~~L~~~Gi-ktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~~~~v~~f~~~~~~------- 84 (135)
T TIGR01244 13 PQLTKADAAQAAQLGF-KTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDITPDDVETFRAAIGA------- 84 (135)
T ss_pred CCCCHHHHHHHHHCCC-cEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCCCHHHHHHHHHHHHh-------
Confidence 4578888887665542 4799999987643211 1232 5666532 11 112333333321
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHH
Q 013384 391 NASSGSNLYVVCRRGNDSQRAVQAL 415 (444)
Q Consensus 391 ~~~~~~~Ivv~C~~G~~S~~aa~~L 415 (444)
.+.||+++|++|.|+..++..+
T Consensus 85 ---~~~pvL~HC~sG~Rt~~l~al~ 106 (135)
T TIGR01244 85 ---AEGPVLAYCRSGTRSSLLWGFR 106 (135)
T ss_pred ---CCCCEEEEcCCChHHHHHHHHH
Confidence 2479999999999987766543
No 195
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.04 E-value=0.066 Score=52.92 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=52.0
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCC
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDN 170 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~ 170 (444)
.+..+|+|+|+|++|..+++.+...|+..+.++|.+.- |+.-.-.... ++... +.-..+|+||||+..
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~------rl~~a~~~~~----i~~~~--~~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPR------RRDGATGYEV----LDPEK--DPRRDYRAIYDASGD 210 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH------HHHhhhhccc----cChhh--ccCCCCCEEEECCCC
Confidence 35678999999999999999888899988888765321 2100000000 11000 012468999999998
Q ss_pred hHhHHHHHHHHHHcCC
Q 013384 171 APSRYMISDCCVVLGK 186 (444)
Q Consensus 171 ~~~r~~i~~~~~~~~~ 186 (444)
..+....-+.....++
T Consensus 211 ~~~~~~~~~~l~~~G~ 226 (308)
T TIGR01202 211 PSLIDTLVRRLAKGGE 226 (308)
T ss_pred HHHHHHHHHhhhcCcE
Confidence 7654444445545554
No 196
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.04 E-value=0.035 Score=58.58 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=53.7
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccc-ccccc-c-cCcceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVEL-NNMHR-I-NSTVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~-sNl~R-l-np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
+++++|+|+|+|++|.++|..|...|. +++++|....+. ..+.+ + ...+.+.. ..-. . ....+|+||.+
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~~~~--~~~~-~----~~~~~D~Vv~s 85 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGATVRL--GPGP-T----LPEDTDLVVTS 85 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCEEEE--CCCc-c----ccCCCCEEEEC
Confidence 567899999999999999999999997 599998543221 11111 1 12333321 1100 0 23568999988
Q ss_pred cCChHhHHHHHHHHHHcCCcEEE
Q 013384 168 TDNAPSRYMISDCCVVLGKPLVS 190 (444)
Q Consensus 168 ~D~~~~r~~i~~~~~~~~~p~i~ 190 (444)
+.-++... +-..++..++|+++
T Consensus 86 ~Gi~~~~~-~~~~a~~~gi~v~~ 107 (480)
T PRK01438 86 PGWRPDAP-LLAAAADAGIPVWG 107 (480)
T ss_pred CCcCCCCH-HHHHHHHCCCeecc
Confidence 75433222 22233455555553
No 197
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.03 E-value=0.055 Score=48.41 Aligned_cols=110 Identities=22% Similarity=0.256 Sum_probs=60.3
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-------------ccCcceEEEEeecC-Cc-----ccH
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-------------INSTVHIIEHREAL-RT-----SNA 154 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-------------lnp~~~v~~~~~~~-~~-----~~~ 154 (444)
.+|.+||+|-.|+.++++|+.+|. .+.++|.+.-....+.. -+.++-+...+..- .. ++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i 80 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI 80 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence 579999999999999999999997 57788754311111111 11122121111100 00 002
Q ss_pred HhhcCCCcEEEEccC-ChHhHHHHHHHHHHcCCcEEEEcccCC-----cceEEEEe
Q 013384 155 LEILSQYEIVVDATD-NAPSRYMISDCCVVLGKPLVSGAALGL-----EGQLTVYN 204 (444)
Q Consensus 155 ~~~~~~~DvVi~~~D-~~~~r~~i~~~~~~~~~p~i~~~~~g~-----~G~l~~~~ 204 (444)
...+..=.+|||++- +++....+.+.+...++.+|++...|. .|.+.++.
T Consensus 81 ~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~ 136 (163)
T PF03446_consen 81 LAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMV 136 (163)
T ss_dssp GGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEE
T ss_pred hhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEc
Confidence 222344567777654 556667788888888888888776553 35555543
No 198
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.01 E-value=0.11 Score=44.07 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=56.9
Q ss_pred cEEEEC-CCccHHHHHHHHHHcC-CCcEEEeeCCcccccccccccC----cceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 95 SILVIG-AGGLGSPALLYLAACG-VGRLGIVDHDVVELNNMHRINS----TVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 95 ~VlIvG-~GglGs~ia~~La~~G-vg~i~lvD~D~V~~sNl~Rlnp----~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
||.||| .|-+|.++++.|...= +..+.++....-.-..+.-..| ...+.... ...+.+.+.|+||.|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dvvf~a~ 74 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED------ADPEELSDVDVVFLAL 74 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE------TSGHHHTTESEEEE-S
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee------cchhHhhcCCEEEecC
Confidence 699999 7778999999998832 2344455544411111111222 11111111 1123348999999999
Q ss_pred CChHhHHHHHHHHHHcCCcEEEEc-ccCCc
Q 013384 169 DNAPSRYMISDCCVVLGKPLVSGA-ALGLE 197 (444)
Q Consensus 169 D~~~~r~~i~~~~~~~~~p~i~~~-~~g~~ 197 (444)
++...+.+...+ .+.|+++|+.+ .+.+.
T Consensus 75 ~~~~~~~~~~~~-~~~g~~ViD~s~~~R~~ 103 (121)
T PF01118_consen 75 PHGASKELAPKL-LKAGIKVIDLSGDFRLD 103 (121)
T ss_dssp CHHHHHHHHHHH-HHTTSEEEESSSTTTTS
T ss_pred chhHHHHHHHHH-hhCCcEEEeCCHHHhCC
Confidence 997776555554 88899999865 34443
No 199
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=94.97 E-value=0.027 Score=55.13 Aligned_cols=74 Identities=28% Similarity=0.415 Sum_probs=49.1
Q ss_pred EEEECCCc-cHHHHHHHHHHcCCCcEEEeeCCccccccccc-c-----cCcceEE--EEeecCCc-ccHHhhcC--CCcE
Q 013384 96 ILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHR-I-----NSTVHII--EHREALRT-SNALEILS--QYEI 163 (444)
Q Consensus 96 VlIvG~Gg-lGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-l-----np~~~v~--~~~~~~~~-~~~~~~~~--~~Dv 163 (444)
|+|-|+|| +|++++++|++.+..+|.++|.|.-...++.+ + ++.++.. .+...+.+ +....+++ +.|+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence 78888555 89999999999999999999999988888887 3 2334333 33344443 33456667 8899
Q ss_pred EEEccC
Q 013384 164 VVDATD 169 (444)
Q Consensus 164 Vi~~~D 169 (444)
|+.+..
T Consensus 81 VfHaAA 86 (293)
T PF02719_consen 81 VFHAAA 86 (293)
T ss_dssp EEE---
T ss_pred EEEChh
Confidence 997754
No 200
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.97 E-value=0.077 Score=51.94 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=57.0
Q ss_pred hhhcCcEEEECCCc-cHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 90 ~L~~~~VlIvG~Gg-lGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
.|++++|+|||.|. +|.+++..|...|. ++++++.. ..+..+.++++|+||.|+
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~------------------------t~~l~~~~~~ADIVIsAv 209 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSR------------------------SKDMASYLKDADVIVSAV 209 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCC------------------------chhHHHHHhhCCEEEECC
Confidence 68999999999999 99999999998884 55554321 135567789999999999
Q ss_pred CChHhHHHHHHHHHHcCCcEEEEcccC
Q 013384 169 DNAPSRYMISDCCVVLGKPLVSGAALG 195 (444)
Q Consensus 169 D~~~~r~~i~~~~~~~~~p~i~~~~~g 195 (444)
..+.. +..--.+.+.-+|+.+...
T Consensus 210 g~p~~---i~~~~vk~gavVIDvGi~~ 233 (286)
T PRK14175 210 GKPGL---VTKDVVKEGAVIIDVGNTP 233 (286)
T ss_pred CCCcc---cCHHHcCCCcEEEEcCCCc
Confidence 87642 2222245566677777543
No 201
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.96 E-value=0.08 Score=53.12 Aligned_cols=95 Identities=18% Similarity=0.235 Sum_probs=56.0
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc----cc--CcceEEEEeecCC-cccHHhhcCCCcEEEE
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR----IN--STVHIIEHREALR-TSNALEILSQYEIVVD 166 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R----ln--p~~~v~~~~~~~~-~~~~~~~~~~~DvVi~ 166 (444)
.+|+|||+|.+|+.+|..|+.+|. +++++|.+... ..+.+ .. +..+.......+. ..+. +.+.++|+||.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil 79 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRARIG-DELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLV 79 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecHHHH-HHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEE
Confidence 479999999999999999999995 78888875421 11111 00 0000110001111 1112 34578999999
Q ss_pred ccCChHhHHHHHHHHH--HcCCcEEEE
Q 013384 167 ATDNAPSRYMISDCCV--VLGKPLVSG 191 (444)
Q Consensus 167 ~~D~~~~r~~i~~~~~--~~~~p~i~~ 191 (444)
|+..+.....+..... ..+..+++.
T Consensus 80 ~vk~~~~~~~~~~l~~~~~~~~iii~~ 106 (341)
T PRK08229 80 TVKSAATADAAAALAGHARPGAVVVSF 106 (341)
T ss_pred EecCcchHHHHHHHHhhCCCCCEEEEe
Confidence 9988766665555432 233445554
No 202
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.93 E-value=0.031 Score=58.27 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=58.1
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
..|.+++|+|+|.|.+|..+|+.|...|. +++++|.|.....- . ....+. ..+..++++.+|+|+.|+
T Consensus 250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~-A-~~~G~~---------~~~leell~~ADIVI~at 317 (476)
T PTZ00075 250 VMIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQ-A-AMEGYQ---------VVTLEDVVETADIFVTAT 317 (476)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHH-H-HhcCce---------eccHHHHHhcCCEEEECC
Confidence 36899999999999999999999999998 68888766432100 0 000111 113456678999999997
Q ss_pred CChHhHHHHHHHHH---HcCCcEEEEcc
Q 013384 169 DNAPSRYMISDCCV---VLGKPLVSGAA 193 (444)
Q Consensus 169 D~~~~r~~i~~~~~---~~~~p~i~~~~ 193 (444)
.+ +..|+.... +.+.-+++.+.
T Consensus 318 Gt---~~iI~~e~~~~MKpGAiLINvGr 342 (476)
T PTZ00075 318 GN---KDIITLEHMRRMKNNAIVGNIGH 342 (476)
T ss_pred Cc---ccccCHHHHhccCCCcEEEEcCC
Confidence 64 334543333 23344666543
No 203
>PLN02427 UDP-apiose/xylose synthase
Probab=94.92 E-value=0.12 Score=52.66 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=65.8
Q ss_pred HhhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCccccccccccc-C--cceEEEEeecCCc-ccHHhhcCCCcE
Q 013384 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRIN-S--TVHIIEHREALRT-SNALEILSQYEI 163 (444)
Q Consensus 89 ~~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rln-p--~~~v~~~~~~~~~-~~~~~~~~~~Dv 163 (444)
++++..+|+|.|+ |-+|+.+++.|+..|--++..+|...-....+.... + .-.++.+...+.. +...++++++|+
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence 4677788999995 779999999999985336777775421111111110 0 0134455555543 334566788999
Q ss_pred EEEccCC---------hHh--------HHHHHHHHHHcCCcEEEEcccCCcc
Q 013384 164 VVDATDN---------APS--------RYMISDCCVVLGKPLVSGAALGLEG 198 (444)
Q Consensus 164 Vi~~~D~---------~~~--------r~~i~~~~~~~~~p~i~~~~~g~~G 198 (444)
||.+.-. +.. -..+.++|...++.+|+.++...+|
T Consensus 90 ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vYg 141 (386)
T PLN02427 90 TINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYG 141 (386)
T ss_pred EEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeeC
Confidence 9987631 100 1123455666777888887655554
No 204
>PLN03139 formate dehydrogenase; Provisional
Probab=94.92 E-value=0.075 Score=54.36 Aligned_cols=93 Identities=19% Similarity=0.164 Sum_probs=61.3
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
..|.+++|.|||+|.+|..+|+.|...|+ ++..+|.......... ...+. ..++..++++.+|+|+.+.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~----~~g~~------~~~~l~ell~~sDvV~l~l 263 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEK----ETGAK------FEEDLDAMLPKCDVVVINT 263 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHh----hcCce------ecCCHHHHHhhCCEEEEeC
Confidence 46999999999999999999999999998 4666765322110000 00000 0135677889999887665
Q ss_pred -CChHhHHHHHHHHHHc---CCcEEEEc
Q 013384 169 -DNAPSRYMISDCCVVL---GKPLVSGA 192 (444)
Q Consensus 169 -D~~~~r~~i~~~~~~~---~~p~i~~~ 192 (444)
.+..++.+++...... +.-+|+.+
T Consensus 264 Plt~~T~~li~~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 264 PLTEKTRGMFNKERIAKMKKGVLIVNNA 291 (386)
T ss_pred CCCHHHHHHhCHHHHhhCCCCeEEEECC
Confidence 5678888887654433 33466654
No 205
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=94.91 E-value=0.16 Score=45.64 Aligned_cols=92 Identities=17% Similarity=0.117 Sum_probs=57.6
Q ss_pred EEEECC-CccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCc-ccHHhhcCCCcEEEEccCCh--
Q 013384 96 ILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRT-SNALEILSQYEIVVDATDNA-- 171 (444)
Q Consensus 96 VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~-~~~~~~~~~~DvVi~~~D~~-- 171 (444)
|+|+|+ |.+|..+++.|...| -+++.+=.+.-... . ...++.....+.+ +...+.++++|.||.+....
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~~~~~----~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSPSKAE----D--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGHH----H--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecCchhcc----c--ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 799997 779999999999999 46665422211111 1 2344555554443 45566788999999987532
Q ss_pred --HhHHHHHHHHHHcCCc-EEEEccc
Q 013384 172 --PSRYMISDCCVVLGKP-LVSGAAL 194 (444)
Q Consensus 172 --~~r~~i~~~~~~~~~p-~i~~~~~ 194 (444)
..-..+-++|...+++ +|..+..
T Consensus 74 ~~~~~~~~~~a~~~~~~~~~v~~s~~ 99 (183)
T PF13460_consen 74 DVDAAKNIIEAAKKAGVKRVVYLSSA 99 (183)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEEET
T ss_pred cccccccccccccccccccceeeecc
Confidence 2233566677777775 3333333
No 206
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=94.88 E-value=0.054 Score=54.19 Aligned_cols=90 Identities=8% Similarity=0.055 Sum_probs=58.2
Q ss_pred hhhcCcEEEECCCccHHHHHHHHH-HcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La-~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
.|.+++|.|||.|.+|..+|+.|. ..|+ ++...|.-. .. ... ..+ ........++++.+|+|+.+.
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm-~V~~~~~~~-~~--------~~~-~~~--~~~~~~l~ell~~sDvv~lh~ 208 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNM-PILYNARRH-HK--------EAE-ERF--NARYCDLDTLLQESDFVCIIL 208 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCC-EEEEECCCC-ch--------hhH-Hhc--CcEecCHHHHHHhCCEEEEeC
Confidence 699999999999999999999986 5565 454444311 00 000 000 011124678889999987655
Q ss_pred -CChHhHHHHHHHHHHcCC---cEEEEc
Q 013384 169 -DNAPSRYMISDCCVVLGK---PLVSGA 192 (444)
Q Consensus 169 -D~~~~r~~i~~~~~~~~~---p~i~~~ 192 (444)
-+++++.+|++.....=+ -+|+.+
T Consensus 209 plt~~T~~li~~~~l~~mk~ga~lIN~a 236 (323)
T PRK15409 209 PLTDETHHLFGAEQFAKMKSSAIFINAG 236 (323)
T ss_pred CCChHHhhccCHHHHhcCCCCeEEEECC
Confidence 477899998877554433 366654
No 207
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.78 E-value=0.14 Score=54.67 Aligned_cols=92 Identities=20% Similarity=0.232 Sum_probs=60.4
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
..|.+++|.|||.|.+|..+|+.|...|. ++..+|.- ........+ .+.. .+...++++.+|+|+.++
T Consensus 134 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~-~~~~~~~~~----g~~~------~~~l~ell~~aDvV~l~l 201 (525)
T TIGR01327 134 TELYGKTLGVIGLGRIGSIVAKRAKAFGM-KVLAYDPY-ISPERAEQL----GVEL------VDDLDELLARADFITVHT 201 (525)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCC-CChhHHHhc----CCEE------cCCHHHHHhhCCEEEEcc
Confidence 36899999999999999999999998887 67777642 110000000 0110 124678889999988776
Q ss_pred C-ChHhHHHHHHHHHHc---CCcEEEEc
Q 013384 169 D-NAPSRYMISDCCVVL---GKPLVSGA 192 (444)
Q Consensus 169 D-~~~~r~~i~~~~~~~---~~p~i~~~ 192 (444)
- +++++.+++...... +.-+|+.+
T Consensus 202 Plt~~T~~li~~~~l~~mk~ga~lIN~a 229 (525)
T TIGR01327 202 PLTPETRGLIGAEELAKMKKGVIIVNCA 229 (525)
T ss_pred CCChhhccCcCHHHHhcCCCCeEEEEcC
Confidence 5 567888876554433 33466654
No 208
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=94.77 E-value=0.055 Score=53.97 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=51.9
Q ss_pred hhcCcEEEECC-CccHHHHHHHHHHcC-CCcEEEeeCCcccccccccccCcceEEEEeecCCc-ccHHhhcCCCcEEEEc
Q 013384 91 LLKSSILVIGA-GGLGSPALLYLAACG-VGRLGIVDHDVVELNNMHRINSTVHIIEHREALRT-SNALEILSQYEIVVDA 167 (444)
Q Consensus 91 L~~~~VlIvG~-GglGs~ia~~La~~G-vg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~-~~~~~~~~~~DvVi~~ 167 (444)
+++++|+|.|+ |++|+.+++.|+..| ..++.++|.+.....++....+...+..+...+.+ +...+.+.++|+||.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence 46788999985 779999999999987 45788888764332222221111234455555554 3455667889999986
Q ss_pred cC
Q 013384 168 TD 169 (444)
Q Consensus 168 ~D 169 (444)
..
T Consensus 82 Ag 83 (324)
T TIGR03589 82 AA 83 (324)
T ss_pred cc
Confidence 53
No 209
>PRK14982 acyl-ACP reductase; Provisional
Probab=94.75 E-value=0.027 Score=56.56 Aligned_cols=74 Identities=27% Similarity=0.386 Sum_probs=50.6
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHH-cCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~-~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
.|++++|+|+|+ |.+|+.+++.|+. .|+.++.+++.+.-....+.. ... ...+ ....+.+.++|+|+.+
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~---el~----~~~i--~~l~~~l~~aDiVv~~ 222 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQA---ELG----GGKI--LSLEEALPEADIVVWV 222 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHH---Hhc----cccH--HhHHHHHccCCEEEEC
Confidence 588999999999 7899999999985 589999998765322222111 110 0111 1234667889999999
Q ss_pred cCChH
Q 013384 168 TDNAP 172 (444)
Q Consensus 168 ~D~~~ 172 (444)
+..+.
T Consensus 223 ts~~~ 227 (340)
T PRK14982 223 ASMPK 227 (340)
T ss_pred CcCCc
Confidence 88754
No 210
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.74 E-value=0.06 Score=56.75 Aligned_cols=94 Identities=19% Similarity=0.263 Sum_probs=55.8
Q ss_pred HHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 88 q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
-..+.+++|+|+|+|+.|..++..|...|. .+++.|.+.-....+ +.. ..+..+... ...+.+.++|+||-.
T Consensus 10 ~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~--l~~-~gi~~~~~~----~~~~~~~~~d~vV~S 81 (473)
T PRK00141 10 LPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDNETARHKL--IEV-TGVADISTA----EASDQLDSFSLVVTS 81 (473)
T ss_pred cccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCChHHHHHH--HHh-cCcEEEeCC----CchhHhcCCCEEEeC
Confidence 345677899999999999999999999998 899988643221111 011 122222211 112334678999865
Q ss_pred cCChHhHHHHHHHHHHcCCcEEE
Q 013384 168 TDNAPSRYMISDCCVVLGKPLVS 190 (444)
Q Consensus 168 ~D~~~~r~~i~~~~~~~~~p~i~ 190 (444)
..-+... ..-..+++.++|++.
T Consensus 82 pgi~~~~-p~~~~a~~~gi~v~~ 103 (473)
T PRK00141 82 PGWRPDS-PLLVDAQSQGLEVIG 103 (473)
T ss_pred CCCCCCC-HHHHHHHHCCCceee
Confidence 4322221 223345667777664
No 211
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.73 E-value=0.036 Score=55.28 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=46.7
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCC-cEEEeeCCccccccccc----ccCcc-eEEEEeecCCcccHHhhcCCCcEEE
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHR----INSTV-HIIEHREALRTSNALEILSQYEIVV 165 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg-~i~lvD~D~V~~sNl~R----lnp~~-~v~~~~~~~~~~~~~~~~~~~DvVi 165 (444)
+..||.|||+|.+|+.+|..|+..|+. +|.|+|-+.-...-... ..|.. .+... ..+ .+-++++|+||
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~-----~~~-~~~~~~adivI 78 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY-----AGD-YSDCKDADLVV 78 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE-----eCC-HHHhCCCCEEE
Confidence 346899999999999999999999985 79999963221111111 12211 12121 122 23468999999
Q ss_pred EccCC
Q 013384 166 DATDN 170 (444)
Q Consensus 166 ~~~D~ 170 (444)
-+...
T Consensus 79 itag~ 83 (315)
T PRK00066 79 ITAGA 83 (315)
T ss_pred EecCC
Confidence 76654
No 212
>PLN02306 hydroxypyruvate reductase
Probab=94.71 E-value=0.077 Score=54.34 Aligned_cols=101 Identities=19% Similarity=0.191 Sum_probs=62.7
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHH-HcCCCcEEEeeCCccccccccc----ccCcceE-EEEeecCC-cccHHhhcCCC
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDVVELNNMHR----INSTVHI-IEHREALR-TSNALEILSQY 161 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La-~~Gvg~i~lvD~D~V~~sNl~R----lnp~~~v-~~~~~~~~-~~~~~~~~~~~ 161 (444)
..|.+++|.|||.|.+|..+|+.|. ..|+ ++..+|...- ..+.+ ......- ......+. ..+..++++.+
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm-~V~~~d~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~s 237 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQS--TRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREA 237 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCCCc--hhhhhhhhhhcccccccccccccccccCCHHHHHhhC
Confidence 3599999999999999999999985 6677 5777775321 00000 0000000 00000011 13578889999
Q ss_pred cEEEEcc-CChHhHHHHHHHHHHcCC---cEEEEc
Q 013384 162 EIVVDAT-DNAPSRYMISDCCVVLGK---PLVSGA 192 (444)
Q Consensus 162 DvVi~~~-D~~~~r~~i~~~~~~~~~---p~i~~~ 192 (444)
|+|+.+. -+++++.+|++.....=+ -+|+.+
T Consensus 238 DiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~a 272 (386)
T PLN02306 238 DVISLHPVLDKTTYHLINKERLALMKKEAVLVNAS 272 (386)
T ss_pred CEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECC
Confidence 9988754 477899999887655433 467654
No 213
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.70 E-value=0.06 Score=53.45 Aligned_cols=95 Identities=19% Similarity=0.270 Sum_probs=57.3
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc--ccC----cceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--INS----TVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R--lnp----~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
+|.|||+|.+|+.++..|+..|. +++++|.+.-....+.. .++ ...+.. .... ..+..+.+.++|+||.|+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~D~vi~~v 79 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINADRENPRYLPGIKLPD-NLRA-TTDLAEALADADLILVAV 79 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCcccccCCCCcCCC-CeEE-eCCHHHHHhCCCEEEEeC
Confidence 69999999999999999999987 58888875422221221 111 100000 0001 123345667899999999
Q ss_pred CChHhHHHHHHHHH--HcCCcEEEEc
Q 013384 169 DNAPSRYMISDCCV--VLGKPLVSGA 192 (444)
Q Consensus 169 D~~~~r~~i~~~~~--~~~~p~i~~~ 192 (444)
-+...+..+..... ..+..+|+..
T Consensus 80 ~~~~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 80 PSQALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 88766665554432 2344566553
No 214
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=94.67 E-value=0.16 Score=50.96 Aligned_cols=78 Identities=23% Similarity=0.230 Sum_probs=47.9
Q ss_pred hhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCccccccccc-ccCcceEEEEeecCCc-ccHHhhcC--CCcEEE
Q 013384 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-INSTVHIIEHREALRT-SNALEILS--QYEIVV 165 (444)
Q Consensus 91 L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-lnp~~~v~~~~~~~~~-~~~~~~~~--~~DvVi 165 (444)
+++++|+|.|+ |.+|+++++.|+..|. ++.++|.+.-......+ +...-++..+...+.. +...++++ +.|+||
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 80 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVF 80 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEE
Confidence 56789999995 7799999999999995 57777765432221111 1111123344444443 33445555 369999
Q ss_pred EccC
Q 013384 166 DATD 169 (444)
Q Consensus 166 ~~~D 169 (444)
.+.-
T Consensus 81 h~A~ 84 (349)
T TIGR02622 81 HLAA 84 (349)
T ss_pred ECCc
Confidence 7764
No 215
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=94.64 E-value=0.079 Score=52.48 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=50.7
Q ss_pred CcEEEECCCccHHHHHHHHHHcCC-CcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChH
Q 013384 94 SSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAP 172 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gv-g~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~ 172 (444)
.+|+|||+|.+|..++..|...|. .++.++|.+.-....+.... +... .. .+..+.++++|+||.|+-...
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g--~~~~-----~~-~~~~~~~~~aDvViiavp~~~ 78 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELG--LGDR-----VT-TSAAEAVKGADLVILCVPVGA 78 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCC--CCce-----ec-CCHHHHhcCCCEEEECCCHHH
Confidence 579999999999999999999997 47888887532111111111 0000 11 223445678999999997765
Q ss_pred hHHHHHHH
Q 013384 173 SRYMISDC 180 (444)
Q Consensus 173 ~r~~i~~~ 180 (444)
.+..+.+.
T Consensus 79 ~~~v~~~l 86 (307)
T PRK07502 79 SGAVAAEI 86 (307)
T ss_pred HHHHHHHH
Confidence 55444444
No 216
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.63 E-value=0.072 Score=55.09 Aligned_cols=89 Identities=17% Similarity=0.249 Sum_probs=61.7
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
..|.+++|.|||.|.+|..+|+.|...|. ++..+|...... .. . +. ......++++.+|+|+.+.
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~~~~~-----~~-~--~~------~~~~l~ell~~sDiVslh~ 211 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIEDKLP-----LG-N--AR------QVGSLEELLAQSDVVSLHV 211 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCcccc-----cC-C--ce------ecCCHHHHHhhCCEEEEcC
Confidence 46999999999999999999999999998 666666421100 00 0 00 0125678899999988766
Q ss_pred C-ChHhHHHHHHHHHHc---CCcEEEEc
Q 013384 169 D-NAPSRYMISDCCVVL---GKPLVSGA 192 (444)
Q Consensus 169 D-~~~~r~~i~~~~~~~---~~p~i~~~ 192 (444)
- +++++.++|...... +.-+|+.+
T Consensus 212 Plt~~T~~li~~~~l~~mk~ga~lIN~a 239 (409)
T PRK11790 212 PETPSTKNMIGAEELALMKPGAILINAS 239 (409)
T ss_pred CCChHHhhccCHHHHhcCCCCeEEEECC
Confidence 4 678898888775443 33466654
No 217
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.62 E-value=0.072 Score=50.72 Aligned_cols=92 Identities=13% Similarity=0.204 Sum_probs=54.7
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCC---CcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gv---g~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
+..||.|||+|.+|..++..|...|. ..+.+++...- ..+.++.....+... .+..+.++++|+||.|+
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~DiViiav 74 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNV--EKLDQLQARYNVSTT------TDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCH--HHHHHHHHHcCcEEe------CChHHHHhcCCEEEEec
Confidence 45689999999999999999998873 33555543211 011111000011111 23345668899999999
Q ss_pred CChHhHHHHHHHHH-HcCCcEEEE
Q 013384 169 DNAPSRYMISDCCV-VLGKPLVSG 191 (444)
Q Consensus 169 D~~~~r~~i~~~~~-~~~~p~i~~ 191 (444)
-....+..+.+... ..+..+|+.
T Consensus 75 p~~~~~~v~~~l~~~~~~~~vis~ 98 (245)
T PRK07634 75 PPSAHEELLAELSPLLSNQLVVTV 98 (245)
T ss_pred CHHHHHHHHHHHHhhccCCEEEEE
Confidence 88766666655542 124455554
No 218
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.60 E-value=0.018 Score=51.35 Aligned_cols=73 Identities=23% Similarity=0.270 Sum_probs=45.5
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
..|..++|+|+|.|-+|.-+|+.|...|. +++++|-|.+..- ++.-.-+.-....+.+...|++|.+|
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~al-----------qA~~dGf~v~~~~~a~~~adi~vtaT 86 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRAL-----------QAAMDGFEVMTLEEALRDADIFVTAT 86 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHH-----------HHHHTT-EEE-HHHHTTT-SEEEE-S
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHH-----------HhhhcCcEecCHHHHHhhCCEEEECC
Confidence 46889999999999999999999999995 8888888775321 00000111112456678899999999
Q ss_pred CChHh
Q 013384 169 DNAPS 173 (444)
Q Consensus 169 D~~~~ 173 (444)
.+...
T Consensus 87 G~~~v 91 (162)
T PF00670_consen 87 GNKDV 91 (162)
T ss_dssp SSSSS
T ss_pred CCccc
Confidence 88653
No 219
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.60 E-value=0.031 Score=54.91 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=31.1
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccc
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVEL 130 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~ 130 (444)
++|.|||+|..|+.+|..|+.+|. .++++|.+.-..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~ 41 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELA 41 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHH
Confidence 479999999999999999999997 799998765443
No 220
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=94.59 E-value=0.0087 Score=62.36 Aligned_cols=101 Identities=19% Similarity=0.197 Sum_probs=65.5
Q ss_pred CCccCHHHHHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhhhhhhhcCCCCCCCCeEEEEcCC
Q 013384 325 DSRISSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMKEKEEHRGSNASSGSNLYVVCRR 404 (444)
Q Consensus 325 ~~~Is~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~Ivv~C~~ 404 (444)
.+||+++++..+ ....++|.|...||..+|+++|+|+|+..-+...+.+...-.... ...+.++++...
T Consensus 621 ~prmsAedl~~~----~~l~v~d~r~~~ef~r~~~s~s~nip~~~~ea~l~~~~~l~~~~~-------~~~~~~v~~~~~ 689 (725)
T KOG1093|consen 621 CPRISAEDLIWL----KMLYVLDTRQESEFQREHFSDSINIPFNNHEADLDWLRFLPGIVC-------SEGKKCVVVGKN 689 (725)
T ss_pred CccccHHHHHHH----HHHHHHhHHHHHHHHHhhccccccCCccchHHHHHHhhcchHhHH-------hhCCeEEEeccc
Confidence 478999998776 236899999999999999999999999843333333322111100 112455555544
Q ss_pred ChhHHHHHHHHHHcCCCCEEEccccHHHHhhC
Q 013384 405 GNDSQRAVQALHKLGFTSARDIIGGLESWAND 436 (444)
Q Consensus 405 G~~S~~aa~~L~~~G~~~v~~l~GG~~aW~~~ 436 (444)
..-+......+..+-+.++..+.+|++++...
T Consensus 690 ~K~~~e~~~~~~~mk~p~~cil~~~~~~~~~~ 721 (725)
T KOG1093|consen 690 DKHAAERLTELYVMKVPRICILHDGFNNIDPV 721 (725)
T ss_pred hHHHHHHhhHHHHhcccHHHHHHHHHhhcCcc
Confidence 44455555555555677778888998855443
No 221
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.57 E-value=0.075 Score=53.74 Aligned_cols=96 Identities=17% Similarity=0.236 Sum_probs=58.5
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeec-CCcccHHhhc--CCCcEEEEcc
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREA-LRTSNALEIL--SQYEIVVDAT 168 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~-~~~~~~~~~~--~~~DvVi~~~ 168 (444)
...+|+|+|+|.+|--++..+...|..++.++|.+.-...-...... ..+...... .......++- ..+|+||+|+
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g-~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG-ADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC-CeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 33389999999999999999999999999999764432211101011 111111000 0011112222 3599999999
Q ss_pred CChHhHHHHHHHHHHcCCcE
Q 013384 169 DNAPSRYMISDCCVVLGKPL 188 (444)
Q Consensus 169 D~~~~r~~i~~~~~~~~~p~ 188 (444)
.++.+.....++++..|.-.
T Consensus 247 G~~~~~~~ai~~~r~gG~v~ 266 (350)
T COG1063 247 GSPPALDQALEALRPGGTVV 266 (350)
T ss_pred CCHHHHHHHHHHhcCCCEEE
Confidence 98877767777776666533
No 222
>PRK07680 late competence protein ComER; Validated
Probab=94.54 E-value=0.09 Score=51.15 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=55.2
Q ss_pred cEEEECCCccHHHHHHHHHHcCC---CcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCCh
Q 013384 95 SILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA 171 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gv---g~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~ 171 (444)
+|.|||+|.+|+.++..|...|. ..+.++|.+.-....+....+.+ .. . .+..+.+.++|+||.|+-..
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~--~~-----~-~~~~~~~~~aDiVilav~p~ 73 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGI--HV-----A-KTIEEVISQSDLIFICVKPL 73 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCe--EE-----E-CCHHHHHHhCCEEEEecCHH
Confidence 58999999999999999999984 46888877542221111111111 11 1 23345567899999999654
Q ss_pred HhHHHHHHHHH--HcCCcEEEEc
Q 013384 172 PSRYMISDCCV--VLGKPLVSGA 192 (444)
Q Consensus 172 ~~r~~i~~~~~--~~~~p~i~~~ 192 (444)
.....+.+... ..+..+|+..
T Consensus 74 ~~~~vl~~l~~~l~~~~~iis~~ 96 (273)
T PRK07680 74 DIYPLLQKLAPHLTDEHCLVSIT 96 (273)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEC
Confidence 55555555432 2244455544
No 223
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=94.53 E-value=0.055 Score=57.50 Aligned_cols=103 Identities=16% Similarity=0.255 Sum_probs=69.0
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHH-----cCC------CcEEEeeCCccccccccc-ccCcceEEEEeecCCcccHHh
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAA-----CGV------GRLGIVDHDVVELNNMHR-INSTVHIIEHREALRTSNALE 156 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~-----~Gv------g~i~lvD~D~V~~sNl~R-lnp~~~v~~~~~~~~~~~~~~ 156 (444)
.+|++.+|+++|+|..|..+|+.|.. .|+ ++|.++|.+-+-..+-.- ++++-.--+.... ...+..+
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~-~~~~L~e 395 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHE-PGASLLE 395 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcc-cCCCHHH
Confidence 57899999999999999999999988 477 699999998543321110 1111100000000 1135667
Q ss_pred hcCC--CcEEEEccCC--hHhHHHHHHHHHHcCCcEEEEc
Q 013384 157 ILSQ--YEIVVDATDN--APSRYMISDCCVVLGKPLVSGA 192 (444)
Q Consensus 157 ~~~~--~DvVi~~~D~--~~~r~~i~~~~~~~~~p~i~~~ 192 (444)
.++. .|++|.++-- .=+...|..++.....|+|++-
T Consensus 396 ~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaL 435 (581)
T PLN03129 396 AVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFAL 435 (581)
T ss_pred HHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence 7777 8999988753 3456677888877888999864
No 224
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.49 E-value=0.058 Score=53.59 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=49.7
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc----ccC-cceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR----INS-TVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R----lnp-~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
.+|+|||+|++|+.+|..|+.+| -.++++..+..+. +.+ ++. .-.......... ...+....+|+||.|+
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~~~~--~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~vilav 80 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSDYEA--VRENGLQVDSVHGDFHLPPVQAY--RSAEDMPPCDWVLVGL 80 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCCHHH--HHhCCeEEEeCCCCeeecCceEE--cchhhcCCCCEEEEEe
Confidence 57999999999999999999999 4778887765332 111 110 000110000111 1112346899999998
Q ss_pred CChHhHHHHHHH
Q 013384 169 DNAPSRYMISDC 180 (444)
Q Consensus 169 D~~~~r~~i~~~ 180 (444)
-...+...+...
T Consensus 81 K~~~~~~~~~~l 92 (313)
T PRK06249 81 KTTANALLAPLI 92 (313)
T ss_pred cCCChHhHHHHH
Confidence 877665544444
No 225
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.48 E-value=0.23 Score=41.21 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=56.3
Q ss_pred EEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHh--hcCCCcEEEEccCChHh
Q 013384 96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALE--ILSQYEIVVDATDNAPS 173 (444)
Q Consensus 96 VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~--~~~~~DvVi~~~D~~~~ 173 (444)
|+|+|.|.+|..+++.|...+ -.+.+||.|.-....+.. .. +..+....+...... -+++++.||.++++...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~~~~~~~~--~~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~ 75 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPERVEELRE--EG--VEVIYGDATDPEVLERAGIEKADAVVILTDDDEE 75 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH--TT--SEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcHHHHHHHh--cc--cccccccchhhhHHhhcCccccCEEEEccCCHHH
Confidence 789999999999999999944 589999988643222211 11 334444444433222 25789999999999887
Q ss_pred HHHHHHHHHH
Q 013384 174 RYMISDCCVV 183 (444)
Q Consensus 174 r~~i~~~~~~ 183 (444)
-..+...+++
T Consensus 76 n~~~~~~~r~ 85 (116)
T PF02254_consen 76 NLLIALLARE 85 (116)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777776
No 226
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.46 E-value=0.13 Score=51.15 Aligned_cols=87 Identities=18% Similarity=0.277 Sum_probs=52.5
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccC-cceEEEEee----cCCcccHHhhcCCCcEEEEcc
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINS-TVHIIEHRE----ALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp-~~~v~~~~~----~~~~~~~~~~~~~~DvVi~~~ 168 (444)
.||+|+|+|++||..+..|+++| ..++++-.+.- +.+++. ...+..... .....+..+....+|+||.++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~----~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR----LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV 75 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH----HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEe
Confidence 37999999999999999999999 66666543331 111111 111111111 011122234446899999998
Q ss_pred CChHhHHHHHHHHHHcC
Q 013384 169 DNAPSRYMISDCCVVLG 185 (444)
Q Consensus 169 D~~~~r~~i~~~~~~~~ 185 (444)
=+..+...+..+....+
T Consensus 76 Ka~q~~~al~~l~~~~~ 92 (307)
T COG1893 76 KAYQLEEALPSLAPLLG 92 (307)
T ss_pred ccccHHHHHHHhhhcCC
Confidence 88777766666654433
No 227
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.40 E-value=0.1 Score=52.56 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=58.2
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccc--cccCc-ce-EEEEeecCC-cccHHhhcCCCcEEEEcc
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMH--RINST-VH-IIEHREALR-TSNALEILSQYEIVVDAT 168 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~--Rlnp~-~~-v~~~~~~~~-~~~~~~~~~~~DvVi~~~ 168 (444)
.+|+|+|+|.+|+.++..|+..| ++.++..+.-....++ +.|.. .. -...+..+. ..+..+.++++|+||-|+
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilav 85 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGV 85 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEe
Confidence 57999999999999999999998 4666654432221122 22211 00 000111111 123345578899999999
Q ss_pred CChHhHHHHHHHHHH--cCCcEEEEc
Q 013384 169 DNAPSRYMISDCCVV--LGKPLVSGA 192 (444)
Q Consensus 169 D~~~~r~~i~~~~~~--~~~p~i~~~ 192 (444)
-....+..+.+.... .+.++|+..
T Consensus 86 ps~~~~~vl~~i~~~l~~~~~vIsl~ 111 (341)
T PRK12439 86 PSHGFRGVLTELAKELRPWVPVVSLV 111 (341)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEE
Confidence 988888777766532 344566653
No 228
>PRK12862 malic enzyme; Reviewed
Probab=94.36 E-value=0.045 Score=60.70 Aligned_cols=120 Identities=13% Similarity=0.205 Sum_probs=77.8
Q ss_pred HHHhhhhccccCCCCCHHHH------------------HhhhcCcEEEECCCccHHHHHHHHHHcCCC--cEEEeeCCcc
Q 013384 69 DMIYRYSRHLLLPSFGVEGQ------------------SNLLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDVV 128 (444)
Q Consensus 69 ~~~~ry~Rq~~l~~~g~~~q------------------~~L~~~~VlIvG~GglGs~ia~~La~~Gvg--~i~lvD~D~V 128 (444)
+-.+||...+.+|-|..+-| .+|++.||+|+|+|..|..+++.|...|+. +|.++|..-+
T Consensus 151 ~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~ 230 (763)
T PRK12862 151 YIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGV 230 (763)
T ss_pred HHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCe
Confidence 34578887765665643222 578999999999999999999999999995 9999997654
Q ss_pred cccccc-cccCcceEEEEeecCCcccHHhhcCCCcEEEEccCCh-HhHHHHHHHHHHcCCcEEEEcc
Q 013384 129 ELNNMH-RINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA-PSRYMISDCCVVLGKPLVSGAA 193 (444)
Q Consensus 129 ~~sNl~-Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~-~~r~~i~~~~~~~~~p~i~~~~ 193 (444)
=..+-. .+|++-.--.... ...+..+.++..|++|.++..- =+..+|..++ ..|+|++-+
T Consensus 231 i~~~r~~~l~~~~~~~a~~~--~~~~l~e~~~~~~v~iG~s~~g~~~~~~v~~M~---~~piifals 292 (763)
T PRK12862 231 VYEGRTELMDPWKARYAQKT--DARTLAEVIEGADVFLGLSAAGVLKPEMVKKMA---PRPLIFALA 292 (763)
T ss_pred eeCCCCccccHHHHHHhhhc--ccCCHHHHHcCCCEEEEcCCCCCCCHHHHHHhc---cCCEEEeCC
Confidence 322211 0221110000000 1246778888899999877621 2355666665 568887643
No 229
>PRK08618 ornithine cyclodeaminase; Validated
Probab=94.32 E-value=0.074 Score=53.25 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=59.0
Q ss_pred hcCcEEEECCCccHHHHHHHHH-HcCCCcEEEeeCCccccccccc-ccC--cceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 92 LKSSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDVVELNNMHR-INS--TVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La-~~Gvg~i~lvD~D~V~~sNl~R-lnp--~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
..++|+|+|+|+.|...+..|+ ..|+.++.++|.+.-....+.. +.. .+++..+ ++..+.++++|+|+.|
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~------~~~~~~~~~aDiVi~a 199 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVV------NSADEAIEEADIIVTV 199 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEe------CCHHHHHhcCCEEEEc
Confidence 4578999999999998888775 5689999999876433222222 211 2222222 3445667899999999
Q ss_pred cCChHhHHHHHHHHHHcCCcEEEEc
Q 013384 168 TDNAPSRYMISDCCVVLGKPLVSGA 192 (444)
Q Consensus 168 ~D~~~~r~~i~~~~~~~~~p~i~~~ 192 (444)
|-+.. ..+. .+.+.|.-++..|
T Consensus 200 T~s~~--p~i~-~~l~~G~hV~~iG 221 (325)
T PRK08618 200 TNAKT--PVFS-EKLKKGVHINAVG 221 (325)
T ss_pred cCCCC--cchH-HhcCCCcEEEecC
Confidence 97653 2344 4445566555444
No 230
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.31 E-value=0.11 Score=50.32 Aligned_cols=89 Identities=21% Similarity=0.172 Sum_probs=56.1
Q ss_pred CcEEEECCCccHHHHHHHHHHcCC--CcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCCh
Q 013384 94 SSILVIGAGGLGSPALLYLAACGV--GRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA 171 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gv--g~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~ 171 (444)
.+|.|||+|.+|+.++..|...|. ..+.++|.+.=. ..++.....+. +. .+..+.+.++|+||.|+-..
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~---~~~~~~~~g~~-----~~-~~~~~~~~~advVil~v~~~ 73 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEK---RAALAEEYGVR-----AA-TDNQEAAQEADVVVLAVKPQ 73 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHH---HHHHHHhcCCe-----ec-CChHHHHhcCCEEEEEcCHH
Confidence 469999999999999999999984 467788765311 11111111111 11 23344567899999999776
Q ss_pred HhHHHHHHHHHHcCCcEEEE
Q 013384 172 PSRYMISDCCVVLGKPLVSG 191 (444)
Q Consensus 172 ~~r~~i~~~~~~~~~p~i~~ 191 (444)
..+..+.++....+..+|+.
T Consensus 74 ~~~~v~~~l~~~~~~~vvs~ 93 (267)
T PRK11880 74 VMEEVLSELKGQLDKLVVSI 93 (267)
T ss_pred HHHHHHHHHHhhcCCEEEEe
Confidence 66666665543334456654
No 231
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=94.30 E-value=0.099 Score=49.14 Aligned_cols=96 Identities=18% Similarity=0.157 Sum_probs=54.1
Q ss_pred cEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChH
Q 013384 95 SILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-INSTVHIIEHREALRTSNALEILSQYEIVVDATDNAP 172 (444)
Q Consensus 95 ~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~ 172 (444)
+|.||| +|.+|+.++..|+..| .++.++|.+.-....+.+ .............+...+..+.+..+|+||.|+-...
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 699997 8999999999999998 578887764322111111 0000000000000111122455678999999998776
Q ss_pred hHHHHHHHHH-HcCCcEEEE
Q 013384 173 SRYMISDCCV-VLGKPLVSG 191 (444)
Q Consensus 173 ~r~~i~~~~~-~~~~p~i~~ 191 (444)
.+..+.+... ..++.+|++
T Consensus 81 ~~~~l~~l~~~l~~~vvI~~ 100 (219)
T TIGR01915 81 VLKTLESLRDELSGKLVISP 100 (219)
T ss_pred HHHHHHHHHHhccCCEEEEe
Confidence 6666555432 123445544
No 232
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.27 E-value=0.12 Score=51.58 Aligned_cols=101 Identities=12% Similarity=0.155 Sum_probs=58.0
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc--------c-cCcceEEEEeecCC-cccHHhhcCCCcE
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--------I-NSTVHIIEHREALR-TSNALEILSQYEI 163 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R--------l-np~~~v~~~~~~~~-~~~~~~~~~~~Dv 163 (444)
++|.|||+|-.|+.+|..++.+|. .++++|.+.-....+.. + ............+. ..+..+.++++|+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 579999999999999999999996 78888876432222110 0 00000000001111 1234566789999
Q ss_pred EEEccC-ChHhHHHHHHHHHHcCC--cEEEEcccC
Q 013384 164 VVDATD-NAPSRYMISDCCVVLGK--PLVSGAALG 195 (444)
Q Consensus 164 Vi~~~D-~~~~r~~i~~~~~~~~~--p~i~~~~~g 195 (444)
|+.|+- +.+.+..+.+.....-. -+|..++.+
T Consensus 87 ViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~ 121 (321)
T PRK07066 87 IQESAPEREALKLELHERISRAAKPDAIIASSTSG 121 (321)
T ss_pred EEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 999975 55555554443333222 255554443
No 233
>PTZ00325 malate dehydrogenase; Provisional
Probab=94.22 E-value=0.16 Score=50.74 Aligned_cols=78 Identities=19% Similarity=0.212 Sum_probs=50.8
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCC-cEEEeeCCccccc--ccccccCcceEEEEeecCCc-ccHHhhcCCCcEE
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVG-RLGIVDHDVVELN--NMHRINSTVHIIEHREALRT-SNALEILSQYEIV 164 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg-~i~lvD~D~V~~s--Nl~Rlnp~~~v~~~~~~~~~-~~~~~~~~~~DvV 164 (444)
.++..||+|+|+ |.+|+.++..|+..|.. +|.|+|-+..+.. +|.-.++.+.+.. .+. .+..+.++++|+|
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~----~td~~~~~~~l~gaDvV 80 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTG----YADGELWEKALRGADLV 80 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEE----ecCCCchHHHhCCCCEE
Confidence 456779999998 99999999999977764 7999998432211 1111233222221 112 2225667899999
Q ss_pred EEccCCh
Q 013384 165 VDATDNA 171 (444)
Q Consensus 165 i~~~D~~ 171 (444)
|.+...+
T Consensus 81 VitaG~~ 87 (321)
T PTZ00325 81 LICAGVP 87 (321)
T ss_pred EECCCCC
Confidence 9877653
No 234
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.22 E-value=0.093 Score=52.41 Aligned_cols=84 Identities=19% Similarity=0.273 Sum_probs=51.9
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccc--cccccc----CcceEEEEeecCCcccHHhhc-CCCcEEEEc
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELN--NMHRIN----STVHIIEHREALRTSNALEIL-SQYEIVVDA 167 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~s--Nl~Rln----p~~~v~~~~~~~~~~~~~~~~-~~~DvVi~~ 167 (444)
+|.|+|+|.+|+.++..|++.| .++++++.+.-... |-.|.| |..... ....++ .+..+.+ .++|+||-|
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~-~~i~~~-~~~~~~~~~~~Dliiia 78 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVNLWGRNHTTFESINTKRKNLKYLPTCHLP-DNISVK-SAIDEVLSDNATCIILA 78 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEEEEecCHHHHHHHHHcCCCcccCCCCcCC-CCeEEe-CCHHHHHhCCCCEEEEE
Confidence 5999999999999999999998 46788887542111 111111 111110 001111 1222333 579999999
Q ss_pred cCChHhHHHHHHHH
Q 013384 168 TDNAPSRYMISDCC 181 (444)
Q Consensus 168 ~D~~~~r~~i~~~~ 181 (444)
+-+...+..+.+..
T Consensus 79 vks~~~~~~l~~l~ 92 (326)
T PRK14620 79 VPTQQLRTICQQLQ 92 (326)
T ss_pred eCHHHHHHHHHHHH
Confidence 98887777766654
No 235
>PLN00106 malate dehydrogenase
Probab=94.21 E-value=0.18 Score=50.49 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=50.3
Q ss_pred hcCcEEEECC-CccHHHHHHHHHHcCC-CcEEEeeCCccccc--ccccccCcceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 92 LKSSILVIGA-GGLGSPALLYLAACGV-GRLGIVDHDVVELN--NMHRINSTVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 92 ~~~~VlIvG~-GglGs~ia~~La~~Gv-g~i~lvD~D~V~~s--Nl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
...||+|+|+ |.+|+.++..|+..|+ .+|.|+|-+..+.. +|.-.++.+.+..+ ...+...+.++++|+||-+
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~---~~~~d~~~~l~~aDiVVit 93 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGF---LGDDQLGDALKGADLVIIP 93 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEE---eCCCCHHHHcCCCCEEEEe
Confidence 3468999999 9999999999998887 57999998661110 11112332322211 1223345677999999977
Q ss_pred cCCh
Q 013384 168 TDNA 171 (444)
Q Consensus 168 ~D~~ 171 (444)
...+
T Consensus 94 AG~~ 97 (323)
T PLN00106 94 AGVP 97 (323)
T ss_pred CCCC
Confidence 6643
No 236
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=94.19 E-value=0.17 Score=51.22 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=58.0
Q ss_pred cEEEECC-CccHHHHHHHHHHcCCCcEE-EeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChH
Q 013384 95 SILVIGA-GGLGSPALLYLAACGVGRLG-IVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAP 172 (444)
Q Consensus 95 ~VlIvG~-GglGs~ia~~La~~Gvg~i~-lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~ 172 (444)
+|+|+|+ |.+|.++++.|...-.-++. +++.+.-....+....|.+.... ...+...+..++..++|+||.|+.+..
T Consensus 2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLV-DLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccC-CceeecCCHHHhhcCCCEEEECCCchH
Confidence 7999998 77899999999976333455 65665321111221233221110 111111123344468999999999877
Q ss_pred hHHHHHHHHHHcCCcEEEEc
Q 013384 173 SRYMISDCCVVLGKPLVSGA 192 (444)
Q Consensus 173 ~r~~i~~~~~~~~~p~i~~~ 192 (444)
.+.++..+ ...|+.+|+.+
T Consensus 81 s~~~~~~~-~~~G~~VIDlS 99 (346)
T TIGR01850 81 SAELAPEL-LAAGVKVIDLS 99 (346)
T ss_pred HHHHHHHH-HhCCCEEEeCC
Confidence 76665554 56789999865
No 237
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=94.17 E-value=0.17 Score=50.42 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=45.1
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCC
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDN 170 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~ 170 (444)
|++++|.|||+|..|..++++|..+|+ ++.+.+...- ..+.+... ..+. .. +..+.++.+|+|+.++-.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~-~Viv~~~~~~--~~~~~a~~-~Gv~-----~~--s~~ea~~~ADiVvLaVpp 69 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGL-NVIVGLRKGG--ASWKKATE-DGFK-----VG--TVEEAIPQADLIMNLLPD 69 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCC-eEEEEECcCh--hhHHHHHH-CCCE-----EC--CHHHHHhcCCEEEEeCCc
Confidence 578999999999999999999999998 4544333211 11111110 0111 11 234566889999999876
Q ss_pred h
Q 013384 171 A 171 (444)
Q Consensus 171 ~ 171 (444)
.
T Consensus 70 ~ 70 (314)
T TIGR00465 70 E 70 (314)
T ss_pred H
Confidence 5
No 238
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=94.16 E-value=0.31 Score=53.63 Aligned_cols=106 Identities=13% Similarity=0.109 Sum_probs=64.4
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCccc--HHhhcCCCcEEEE
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSN--ALEILSQYEIVVD 166 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~--~~~~~~~~DvVi~ 166 (444)
.-++++|+|.|+ |-+|+++++.|...|=-+++.+|...- +..+..+.-.++.+...+.... ..+.++++|+||.
T Consensus 312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~---~~~~~~~~~~~~~~~gDl~d~~~~l~~~l~~~D~ViH 388 (660)
T PRK08125 312 AKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSD---AISRFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLP 388 (660)
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCch---hhhhhcCCCceEEEeccccCcHHHHHHHhcCCCEEEE
Confidence 345678999995 669999999999864236777775431 2222212223445555555322 3455788999997
Q ss_pred ccCCh-----------------HhHHHHHHHHHHcCCcEEEEcccCCcc
Q 013384 167 ATDNA-----------------PSRYMISDCCVVLGKPLVSGAALGLEG 198 (444)
Q Consensus 167 ~~D~~-----------------~~r~~i~~~~~~~~~p~i~~~~~g~~G 198 (444)
+.... ..-..+-++|.+.++.+|+.++...+|
T Consensus 389 lAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~~vyg 437 (660)
T PRK08125 389 LVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTSEVYG 437 (660)
T ss_pred CccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcchhhcC
Confidence 54211 111234567777788888877655444
No 239
>PRK08374 homoserine dehydrogenase; Provisional
Probab=94.14 E-value=0.16 Score=51.10 Aligned_cols=98 Identities=19% Similarity=0.217 Sum_probs=55.5
Q ss_pred CcEEEECCCccHHHHHHHHHH--------cCC--CcEEEeeCCc--cccccc--cc----ccCcceEEEEee--cCCccc
Q 013384 94 SSILVIGAGGLGSPALLYLAA--------CGV--GRLGIVDHDV--VELNNM--HR----INSTVHIIEHRE--ALRTSN 153 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~--------~Gv--g~i~lvD~D~--V~~sNl--~R----lnp~~~v~~~~~--~~~~~~ 153 (444)
-+|.|+|+|.+|+.+++.|.. .|+ .=+.+.|.+. +.+..+ .+ ....-.+..+.. .....+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 479999999999999999877 563 2344445321 111111 11 000001111110 000113
Q ss_pred HHhhc--CCCcEEEEccCChHhHHHHHHHHHHcCCcEEEEc
Q 013384 154 ALEIL--SQYEIVVDATDNAPSRYMISDCCVVLGKPLVSGA 192 (444)
Q Consensus 154 ~~~~~--~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~ 192 (444)
..+++ .++|+||+++..... ..+...+...++++|.+.
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a-~~~~~~al~~G~~VVtan 122 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNA-HEWHLEALKEGKSVVTSN 122 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHH-HHHHHHHHhhCCcEEECC
Confidence 44555 479999999965444 455556778999999765
No 240
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.10 E-value=0.15 Score=53.19 Aligned_cols=94 Identities=13% Similarity=0.177 Sum_probs=59.9
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHH--hhcCCCcEEEEcc
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNAL--EILSQYEIVVDAT 168 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~--~~~~~~DvVi~~~ 168 (444)
+...+|+|+|+|.+|..+++.|...|. .+++||.|.=....+....+.+ ..+....+..... ..+.++|.||.++
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~~~~~--~~i~gd~~~~~~L~~~~~~~a~~vi~~~ 305 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEELPNT--LVLHGDGTDQELLEEEGIDEADAFIALT 305 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHCCCC--eEEECCCCCHHHHHhcCCccCCEEEECC
Confidence 456889999999999999999999887 6899987642111111111222 2233333322222 2357899999999
Q ss_pred CChHhHHHHHHHHHHcCCc
Q 013384 169 DNAPSRYMISDCCVVLGKP 187 (444)
Q Consensus 169 D~~~~r~~i~~~~~~~~~p 187 (444)
++......+...|+..+.+
T Consensus 306 ~~~~~n~~~~~~~~~~~~~ 324 (453)
T PRK09496 306 NDDEANILSSLLAKRLGAK 324 (453)
T ss_pred CCcHHHHHHHHHHHHhCCC
Confidence 8876666665566666544
No 241
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=94.09 E-value=0.08 Score=52.37 Aligned_cols=77 Identities=23% Similarity=0.289 Sum_probs=47.4
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCC-cEEEeeCCccccccccc--ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCC
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHR--INSTVHIIEHREALRTSNALEILSQYEIVVDATDN 170 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg-~i~lvD~D~V~~sNl~R--lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~ 170 (444)
.||.|+|+|.+|+.+|..|+.-+++ ++.|+|-. -+...=.. ++-..........+...+..+-++++|+||-+..-
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~-~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~ 79 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN-EEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGV 79 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc-cccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCC
Confidence 4799999999999999999999999 99999976 11111111 11111111111122221224556899999877654
Q ss_pred h
Q 013384 171 A 171 (444)
Q Consensus 171 ~ 171 (444)
+
T Consensus 80 p 80 (313)
T COG0039 80 P 80 (313)
T ss_pred C
Confidence 3
No 242
>PLN02712 arogenate dehydrogenase
Probab=94.06 E-value=0.86 Score=50.17 Aligned_cols=93 Identities=13% Similarity=0.073 Sum_probs=59.9
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcC-CCcEEEEcc
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILS-QYEIVVDAT 168 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~-~~DvVi~~~ 168 (444)
.++..+|.|||+|.+|..+++.|...|. ++.++|.+.. .... ..-.+ ..+ .+..+++. .+|+||-|+
T Consensus 366 ~~~~~kIgIIGlG~mG~slA~~L~~~G~-~V~~~dr~~~--~~~a-~~~Gv--~~~------~~~~el~~~~aDvVILav 433 (667)
T PLN02712 366 DGSKLKIAIVGFGNFGQFLAKTMVKQGH-TVLAYSRSDY--SDEA-QKLGV--SYF------SDADDLCEEHPEVILLCT 433 (667)
T ss_pred CCCCCEEEEEecCHHHHHHHHHHHHCcC-EEEEEECChH--HHHH-HHcCC--eEe------CCHHHHHhcCCCEEEECC
Confidence 3577899999999999999999999885 6888887632 1100 00011 111 22334443 589999999
Q ss_pred CChHhHHHHHHHHH---HcCCcEEEEccc
Q 013384 169 DNAPSRYMISDCCV---VLGKPLVSGAAL 194 (444)
Q Consensus 169 D~~~~r~~i~~~~~---~~~~p~i~~~~~ 194 (444)
-...+...+.+... +.+.-+++.+..
T Consensus 434 P~~~~~~vi~~l~~~~lk~g~ivvDv~Sv 462 (667)
T PLN02712 434 SILSTEKVLKSLPFQRLKRSTLFVDVLSV 462 (667)
T ss_pred ChHHHHHHHHHHHHhcCCCCcEEEECCCc
Confidence 87777777776653 224456666543
No 243
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=93.97 E-value=0.11 Score=54.92 Aligned_cols=122 Identities=13% Similarity=0.139 Sum_probs=79.2
Q ss_pred HHHhhhhccccCCCCCHHHH------------------HhhhcCcEEEECCCccHHHHHHHHH----HcCC------CcE
Q 013384 69 DMIYRYSRHLLLPSFGVEGQ------------------SNLLKSSILVIGAGGLGSPALLYLA----ACGV------GRL 120 (444)
Q Consensus 69 ~~~~ry~Rq~~l~~~g~~~q------------------~~L~~~~VlIvG~GglGs~ia~~La----~~Gv------g~i 120 (444)
.-++||...+-. |..+-| .+|++.+|+++|+|+.|.-+|+.|. +.|+ .+|
T Consensus 257 ~iL~kyr~~i~~--FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i 334 (559)
T PTZ00317 257 DLLERYQNKYRC--FNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSF 334 (559)
T ss_pred HHHHHhccCCCE--ecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeE
Confidence 446788766555 643322 5799999999999999999999988 4899 899
Q ss_pred EEeeCCcccccc----ccc-ccCcceEEEEeecCCcccHHhhcCCC--cEEEEccCC--hHhHHHHHHHHHHcCCcEEEE
Q 013384 121 GIVDHDVVELNN----MHR-INSTVHIIEHREALRTSNALEILSQY--EIVVDATDN--APSRYMISDCCVVLGKPLVSG 191 (444)
Q Consensus 121 ~lvD~D~V~~sN----l~R-lnp~~~v~~~~~~~~~~~~~~~~~~~--DvVi~~~D~--~~~r~~i~~~~~~~~~p~i~~ 191 (444)
.++|.+-+-..+ |.. .-+..+-..........+..+.++.. |++|.++-- .=+...|..++.....|+|++
T Consensus 335 ~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFa 414 (559)
T PTZ00317 335 YLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFP 414 (559)
T ss_pred EEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 999987543221 222 11111110000000113566777776 999988753 335677888887778899986
Q ss_pred c
Q 013384 192 A 192 (444)
Q Consensus 192 ~ 192 (444)
-
T Consensus 415 L 415 (559)
T PTZ00317 415 L 415 (559)
T ss_pred C
Confidence 4
No 244
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=93.96 E-value=0.09 Score=58.05 Aligned_cols=120 Identities=14% Similarity=0.189 Sum_probs=78.5
Q ss_pred HHHhhhhccccCCCCCHHHH------------------HhhhcCcEEEECCCccHHHHHHHHHHcCCC--cEEEeeCCcc
Q 013384 69 DMIYRYSRHLLLPSFGVEGQ------------------SNLLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDVV 128 (444)
Q Consensus 69 ~~~~ry~Rq~~l~~~g~~~q------------------~~L~~~~VlIvG~GglGs~ia~~La~~Gvg--~i~lvD~D~V 128 (444)
+-.+||...+.+|-|..+-| .+|++.||+|.|+|..|..+++.|...|+. +|.++|..-+
T Consensus 143 ~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~ 222 (752)
T PRK07232 143 YIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGV 222 (752)
T ss_pred HHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCe
Confidence 44578877765555653222 578999999999999999999999999995 9999998654
Q ss_pred ccccc-ccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCC-hHhHHHHHHHHHHcCCcEEEEcc
Q 013384 129 ELNNM-HRINSTVHIIEHREALRTSNALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAA 193 (444)
Q Consensus 129 ~~sNl-~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~-~~~r~~i~~~~~~~~~p~i~~~~ 193 (444)
=..+- ..+|++-.--... -...+..+.++..|++|.++-. .=+..+|..++ ..|+|++-+
T Consensus 223 i~~~r~~~~~~~k~~~a~~--~~~~~l~~~i~~~~v~iG~s~~g~~~~~~v~~M~---~~piifals 284 (752)
T PRK07232 223 IYKGRTEGMDEWKAAYAVD--TDARTLAEAIEGADVFLGLSAAGVLTPEMVKSMA---DNPIIFALA 284 (752)
T ss_pred ecCCCcccccHHHHHHhcc--CCCCCHHHHHcCCCEEEEcCCCCCCCHHHHHHhc---cCCEEEecC
Confidence 32221 1122211111111 1124677888899999987762 12355666665 378888643
No 245
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.94 E-value=0.093 Score=52.47 Aligned_cols=93 Identities=22% Similarity=0.193 Sum_probs=56.5
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc--ccC----cceEEEEeecCC-cccHHhhcCCCcEEEE
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--INS----TVHIIEHREALR-TSNALEILSQYEIVVD 166 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R--lnp----~~~v~~~~~~~~-~~~~~~~~~~~DvVi~ 166 (444)
.+|.|+|+|.+|+.++..|++.|. +++++|.+.-....++. .|. .... ...+. ..+..+.++++|+||.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~---~~~~~~~~~~~e~~~~aD~Vi~ 80 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARRPEFAAALAAERENREYLPGVAL---PAELYPTADPEEALAGADFAVV 80 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhCcccccCCCCcC---CCCeEEeCCHHHHHcCCCEEEE
Confidence 379999999999999999999985 68888885322221221 111 1110 00011 1233455688999999
Q ss_pred ccCChHhHHHHHHHHHHcCCcEEEEc
Q 013384 167 ATDNAPSRYMISDCCVVLGKPLVSGA 192 (444)
Q Consensus 167 ~~D~~~~r~~i~~~~~~~~~p~i~~~ 192 (444)
|+-+...+..+... +.+..+|+..
T Consensus 81 ~v~~~~~~~v~~~l--~~~~~vi~~~ 104 (328)
T PRK14618 81 AVPSKALRETLAGL--PRALGYVSCA 104 (328)
T ss_pred ECchHHHHHHHHhc--CcCCEEEEEe
Confidence 99887665555332 2344566554
No 246
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=93.93 E-value=0.012 Score=58.45 Aligned_cols=48 Identities=2% Similarity=0.068 Sum_probs=38.3
Q ss_pred CHHHHHHHHhcCCCcEEEEecCcccccccCCCCceecCchhhhhhhhhhH
Q 013384 329 SSKEYKEKVVNGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEIS 378 (444)
Q Consensus 329 s~~el~~~l~~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~ 378 (444)
+++++.+.+... ..++|+|.+..|..+||||++|+|...+..+...+.
T Consensus 17 ~~~~~~~~l~~~--~~~~d~rg~i~~a~egIngtis~~~~~~~~~~~~l~ 64 (314)
T PRK00142 17 DPEAFRDEHLAL--CKSLGLKGRILVAEEGINGTVSGTIEQTEAYMAWLK 64 (314)
T ss_pred CHHHHHHHHHHH--HHHcCCeeEEEEcCCCceEEEEecHHHHHHHHHHHh
Confidence 367787777654 578999999999999999999999976666554443
No 247
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.93 E-value=0.15 Score=55.70 Aligned_cols=87 Identities=16% Similarity=0.308 Sum_probs=64.6
Q ss_pred cCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHh--hcCCCcEEEEccCC
Q 013384 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALE--ILSQYEIVVDATDN 170 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~--~~~~~DvVi~~~D~ 170 (444)
+.+|+|+|+|.+|..+++.|...|+ +++++|.|.-....+.+. ....+..+.+..+..+ -++++|+||.++|+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~----g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d 474 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF----GMKVFYGDATRMDLLESAGAAKAEVLINAIDD 474 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc----CCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCC
Confidence 5789999999999999999999998 689999887654444331 2334555555433332 24689999999999
Q ss_pred hHhHHHHHHHHHHc
Q 013384 171 APSRYMISDCCVVL 184 (444)
Q Consensus 171 ~~~r~~i~~~~~~~ 184 (444)
.+....+-..+++.
T Consensus 475 ~~~n~~i~~~ar~~ 488 (621)
T PRK03562 475 PQTSLQLVELVKEH 488 (621)
T ss_pred HHHHHHHHHHHHHh
Confidence 98887777777776
No 248
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.91 E-value=0.13 Score=49.67 Aligned_cols=90 Identities=11% Similarity=0.098 Sum_probs=52.1
Q ss_pred cEEEECCCccHHHHHHHHHHcCCC--cEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChH
Q 013384 95 SILVIGAGGLGSPALLYLAACGVG--RLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAP 172 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg--~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~ 172 (444)
+|.|||+|-+|..+++.|...|.. .+.+.|.+.-....+....+.+ ... .+..+.+.++|+||.|+-...
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~--~~~------~~~~~~~~~aDvVilav~p~~ 73 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKV--RIA------KDNQAVVDRSDVVFLAVRPQI 73 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCc--eEe------CCHHHHHHhCCEEEEEeCHHH
Confidence 699999999999999999999853 3455553221111111111111 111 233455678999999998544
Q ss_pred hHHHHHHHHHHcCCcEEEEc
Q 013384 173 SRYMISDCCVVLGKPLVSGA 192 (444)
Q Consensus 173 ~r~~i~~~~~~~~~p~i~~~ 192 (444)
....+.+.....+..+|+..
T Consensus 74 ~~~vl~~l~~~~~~~vis~~ 93 (258)
T PRK06476 74 AEEVLRALRFRPGQTVISVI 93 (258)
T ss_pred HHHHHHHhccCCCCEEEEEC
Confidence 55555444223445566643
No 249
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.90 E-value=0.067 Score=52.97 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=30.1
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.||.|||+|.+|+.+|..|+..|.+++.|+|-+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~ 35 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIV 35 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECC
Confidence 589999999999999999999986699999973
No 250
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.88 E-value=0.16 Score=51.10 Aligned_cols=77 Identities=18% Similarity=0.339 Sum_probs=46.4
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc---ccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR---INSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R---lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
.+.+|+|+|+|++|..+++.+...|+ ++.++|.......++.. +.-.. +......+. + ......+|+||||+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~-v~~~~~~~~-~--~~~~~~~d~vid~~ 246 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGATY-VNSSKTPVA-E--VKLVGEFDLIIEAT 246 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEE-ecCCccchh-h--hhhcCCCCEEEECc
Confidence 57899999999999999999999998 67777753222222221 11110 110000000 0 11235799999999
Q ss_pred CChHh
Q 013384 169 DNAPS 173 (444)
Q Consensus 169 D~~~~ 173 (444)
.....
T Consensus 247 g~~~~ 251 (355)
T cd08230 247 GVPPL 251 (355)
T ss_pred CCHHH
Confidence 87653
No 251
>PLN02206 UDP-glucuronate decarboxylase
Probab=93.86 E-value=0.24 Score=51.73 Aligned_cols=104 Identities=17% Similarity=0.110 Sum_probs=61.5
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCccccc-ccccccCcceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELN-NMHRINSTVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~s-Nl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
+-++++|+|.|+ |-+|+++++.|...|. ++..+|.+..... ++........++.+...+. ...+.++|+||.+
T Consensus 116 ~~~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~----~~~l~~~D~ViHl 190 (442)
T PLN02206 116 KRKGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDNFFTGRKENVMHHFSNPNFELIRHDVV----EPILLEVDQIYHL 190 (442)
T ss_pred ccCCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeCCCccchhhhhhhccCCceEEEECCcc----ChhhcCCCEEEEe
Confidence 446688999995 6699999999999986 5667775432211 1111111112333333322 2234578999977
Q ss_pred cC---------ChHh--------HHHHHHHHHHcCCcEEEEcccCCcc
Q 013384 168 TD---------NAPS--------RYMISDCCVVLGKPLVSGAALGLEG 198 (444)
Q Consensus 168 ~D---------~~~~--------r~~i~~~~~~~~~p~i~~~~~g~~G 198 (444)
.. ++.. -..|-++|+..++++|..+....+|
T Consensus 191 Aa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VYg 238 (442)
T PLN02206 191 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 238 (442)
T ss_pred eeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHhC
Confidence 63 1110 1245567888888899887655444
No 252
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=93.84 E-value=0.053 Score=53.58 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=28.7
Q ss_pred EEEECCCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 96 ILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 96 VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
|.|||+|.+|+.++..|+..|.+++.|+|-|
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 6899999999999999999887699999987
No 253
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.82 E-value=0.085 Score=52.36 Aligned_cols=74 Identities=22% Similarity=0.200 Sum_probs=46.3
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc----ccCcceEEEEeecCCc-ccHHhhcCCCcEEEEcc
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR----INSTVHIIEHREALRT-SNALEILSQYEIVVDAT 168 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R----lnp~~~v~~~~~~~~~-~~~~~~~~~~DvVi~~~ 168 (444)
.+|.|||+|-+|+.+|..|+..|.+++.++|-. +.-+-.+ ..+.. .......+.. .+..+ +.++|+||-|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~--~~l~~g~a~d~~~~~~-~~~~~~~i~~t~d~~~-~~~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVV--EGIPQGKALDMYEASP-VGGFDTKVTGTNNYAD-TANSDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC--CChhHHHHHhhhhhhh-ccCCCcEEEecCCHHH-hCCCCEEEEcC
Confidence 479999999999999999999998789999972 2111111 11110 0001112221 22233 68999999888
Q ss_pred CCh
Q 013384 169 DNA 171 (444)
Q Consensus 169 D~~ 171 (444)
..+
T Consensus 78 g~p 80 (305)
T TIGR01763 78 GLP 80 (305)
T ss_pred CCC
Confidence 754
No 254
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=93.81 E-value=0.19 Score=48.80 Aligned_cols=88 Identities=13% Similarity=0.145 Sum_probs=54.1
Q ss_pred cEEEECCCccHHHHHHHHHHcC--CCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChH
Q 013384 95 SILVIGAGGLGSPALLYLAACG--VGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAP 172 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~G--vg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~ 172 (444)
+|.|||+|.+|..++..|...+ +.-+.++|.+.-....+.. ...+..+ .+..+++.++|+|+.|+....
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~---~~~~~~~------~~~~ell~~~DvVvi~a~~~~ 73 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLAS---KTGAKAC------LSIDELVEDVDLVVECASVNA 73 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHH---hcCCeeE------CCHHHHhcCCCEEEEcCChHH
Confidence 7999999999999999998764 4445566765321111111 1111111 234556688999999985433
Q ss_pred hHHHHHHHHHHcCCcEEEEc
Q 013384 173 SRYMISDCCVVLGKPLVSGA 192 (444)
Q Consensus 173 ~r~~i~~~~~~~~~p~i~~~ 192 (444)
...+-..+.+.|+.++..+
T Consensus 74 -~~~~~~~al~~Gk~Vvv~s 92 (265)
T PRK13304 74 -VEEVVPKSLENGKDVIIMS 92 (265)
T ss_pred -HHHHHHHHHHcCCCEEEEc
Confidence 3444445566788877643
No 255
>PRK06270 homoserine dehydrogenase; Provisional
Probab=93.79 E-value=0.16 Score=51.12 Aligned_cols=98 Identities=22% Similarity=0.301 Sum_probs=55.8
Q ss_pred CcEEEECCCccHHHHHHHHHHc--------C--CCcEEEeeCCc--cccc--cccc----ccCcceEEEEeecCCcccHH
Q 013384 94 SSILVIGAGGLGSPALLYLAAC--------G--VGRLGIVDHDV--VELN--NMHR----INSTVHIIEHREALRTSNAL 155 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~--------G--vg~i~lvD~D~--V~~s--Nl~R----lnp~~~v~~~~~~~~~~~~~ 155 (444)
-+|.|+|+|.+|+.+++.|... | +.-..++|.+. +... |+.+ ....-.+..+.......+..
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 4799999999999999999765 4 33345557432 1111 1221 01110111111111112444
Q ss_pred hhc--CCCcEEEEccCChH----hHHHHHHHHHHcCCcEEEE
Q 013384 156 EIL--SQYEIVVDATDNAP----SRYMISDCCVVLGKPLVSG 191 (444)
Q Consensus 156 ~~~--~~~DvVi~~~D~~~----~r~~i~~~~~~~~~p~i~~ 191 (444)
+++ .+.|+|++||-+.. .-+.+...+.++|+++|.+
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVta 124 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTS 124 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcC
Confidence 555 36899999997532 2345556777899999986
No 256
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.79 E-value=0.14 Score=50.30 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=54.3
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccccc-CcceEEEE------eecCCcccHHhhcCCCcEEEEc
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRIN-STVHIIEH------REALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rln-p~~~v~~~------~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
+|+|+|+|++|+.++..|+..|. .+++++.. +++..++ ....+... ..... .+..+....+|+||.|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r~----~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~vila 75 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVRP----KRAKALRERGLVIRSDHGDAVVPGPVI-TDPEELTGPFDLVILA 75 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEecH----HHHHHHHhCCeEEEeCCCeEEecceee-cCHHHccCCCCEEEEE
Confidence 69999999999999999999985 68888761 1221111 01111110 11111 1223345789999999
Q ss_pred cCChHhHHHHHHHHHH--cCCcEEEE
Q 013384 168 TDNAPSRYMISDCCVV--LGKPLVSG 191 (444)
Q Consensus 168 ~D~~~~r~~i~~~~~~--~~~p~i~~ 191 (444)
+-.......+...... .+..+|+.
T Consensus 76 vk~~~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 76 VKAYQLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred ecccCHHHHHHHHHhhcCCCCEEEEe
Confidence 9887666655555432 24445543
No 257
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=93.78 E-value=0.15 Score=47.90 Aligned_cols=106 Identities=25% Similarity=0.314 Sum_probs=68.4
Q ss_pred hhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCCccccccccc------ccCcceEEEEeecCCcc--------cHH
Q 013384 91 LLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR------INSTVHIIEHREALRTS--------NAL 155 (444)
Q Consensus 91 L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R------lnp~~~v~~~~~~~~~~--------~~~ 155 (444)
++++.++++| +||+|-.+++.|...|+..+.|.|. ..|..- +||.+++..+.-.++.. ...
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~----~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~ 78 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDS----EENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKIL 78 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhh----hhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHH
Confidence 5688888885 9999999999999999999988764 233222 89999998888777641 122
Q ss_pred hhcCCCcEEEEcc----CC-hHhHHHHHHHHHH----cCCcEEEEcccCCcceE
Q 013384 156 EILSQYEIVVDAT----DN-APSRYMISDCCVV----LGKPLVSGAALGLEGQL 200 (444)
Q Consensus 156 ~~~~~~DvVi~~~----D~-~~~r~~i~~~~~~----~~~p~i~~~~~g~~G~l 200 (444)
.-+...|++|+.. |. .+.-..+|-...- ...|+.+---.|..|.+
T Consensus 79 ~~fg~iDIlINgAGi~~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiI 132 (261)
T KOG4169|consen 79 ATFGTIDILINGAGILDDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGII 132 (261)
T ss_pred HHhCceEEEEcccccccchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEE
Confidence 3356788988653 21 1111222322222 34466665555666644
No 258
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.77 E-value=0.096 Score=40.74 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=26.6
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeC
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~ 125 (444)
||+|||.|-+|+++|..|+..|. +++|++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~ 30 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIER 30 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEec
Confidence 68999999999999999999995 7777654
No 259
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=93.76 E-value=0.05 Score=51.61 Aligned_cols=37 Identities=24% Similarity=0.410 Sum_probs=33.2
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeC
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~ 125 (444)
..|++++|+|.|.|.+|..+++.|...|+.-+.+.|.
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4689999999999999999999999999877767776
No 260
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=93.75 E-value=0.38 Score=48.42 Aligned_cols=109 Identities=14% Similarity=0.063 Sum_probs=66.6
Q ss_pred HhhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCccccc-cccccc------CcceEEEEeecCCc-ccHHhhcC
Q 013384 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELN-NMHRIN------STVHIIEHREALRT-SNALEILS 159 (444)
Q Consensus 89 ~~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~s-Nl~Rln------p~~~v~~~~~~~~~-~~~~~~~~ 159 (444)
.+++.++|+|.|+ |=+|+++++.|...|. +++.+|...-... ++.... ..-++..+...+.+ +....+++
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~ 89 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK 89 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh
Confidence 3677799999996 6699999999999985 6777776432211 111111 01134455555553 34556678
Q ss_pred CCcEEEEccCC---------hH--------hHHHHHHHHHHcCC-cEEEEcccCCcc
Q 013384 160 QYEIVVDATDN---------AP--------SRYMISDCCVVLGK-PLVSGAALGLEG 198 (444)
Q Consensus 160 ~~DvVi~~~D~---------~~--------~r~~i~~~~~~~~~-p~i~~~~~g~~G 198 (444)
++|+||.+... +. .-..+-++|++.++ .+|+.+.....|
T Consensus 90 ~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg 146 (348)
T PRK15181 90 NVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYG 146 (348)
T ss_pred CCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhC
Confidence 89999987531 10 01234467777765 688777544444
No 261
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.70 E-value=0.16 Score=53.26 Aligned_cols=95 Identities=14% Similarity=0.184 Sum_probs=57.2
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccc-ccc-ccccCcceEEEEeecCCcccHHhhcCCCcEEEE
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVEL-NNM-HRINSTVHIIEHREALRTSNALEILSQYEIVVD 166 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~-sNl-~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~ 166 (444)
.-|.+++|+|+|.|..|..+|+.|...|. .+++.|.+.-+. +.+ .++.. ..+..+... ...+.+.++|+||.
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~~~~~l~~-~gi~~~~~~----~~~~~~~~~dlVV~ 83 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEEELGEVSNELKE-LGVKLVLGE----NYLDKLDGFDVIFK 83 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCccchHHHHHHHh-CCCEEEeCC----CChHHhccCCEEEE
Confidence 34567899999999999999999999997 788988653211 110 11111 112222111 11233478999997
Q ss_pred ccCChHhHHHHHHHHHHcCCcEEE
Q 013384 167 ATDNAPSRYMISDCCVVLGKPLVS 190 (444)
Q Consensus 167 ~~D~~~~r~~i~~~~~~~~~p~i~ 190 (444)
+..-+... -+-..+++.++|+++
T Consensus 84 Spgi~~~~-p~~~~a~~~~i~i~s 106 (458)
T PRK01710 84 TPSMRIDS-PELVKAKEEGAYITS 106 (458)
T ss_pred CCCCCCCc-hHHHHHHHcCCcEEe
Confidence 64333322 334455678888875
No 262
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=93.69 E-value=0.26 Score=51.08 Aligned_cols=85 Identities=14% Similarity=0.227 Sum_probs=52.6
Q ss_pred HHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 88 QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 88 q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
...|++++|+|||+|..|..-|.+|--+|+..+.-+=.+.++...-.+-. +....+...+..+.+..+|+|+..
T Consensus 31 ~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~k------A~~dGF~v~~~~Ea~~~ADvVviL 104 (487)
T PRK05225 31 ASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRK------ATENGFKVGTYEELIPQADLVINL 104 (487)
T ss_pred hHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHH------HHhcCCccCCHHHHHHhCCEEEEc
Confidence 47899999999999999999999999999954422111111111000000 000011223467778999999988
Q ss_pred cCChHhHHHHHH
Q 013384 168 TDNAPSRYMISD 179 (444)
Q Consensus 168 ~D~~~~r~~i~~ 179 (444)
+.+-. +..+++
T Consensus 105 lPDt~-q~~v~~ 115 (487)
T PRK05225 105 TPDKQ-HSDVVR 115 (487)
T ss_pred CChHH-HHHHHH
Confidence 87764 555553
No 263
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=93.67 E-value=0.14 Score=49.83 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=31.5
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
.++++|+|+|+||+|..++..|+..|. +++++|.+.
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~ 150 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTV 150 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 346789999999999999999999996 899988653
No 264
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=93.63 E-value=0.26 Score=51.41 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=60.1
Q ss_pred hcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCccc-ccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVE-LNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 92 ~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~-~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
+..||+|.|+ |-+|+++++.|...|. ++..+|.+... ..++..+.....++.....+.. ..+.++|+||.+.-
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~----~~~~~~D~ViHlAa 193 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVE----PILLEVDQIYHLAC 193 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCccHhHhhhhccCCceEEEECcccc----ccccCCCEEEECce
Confidence 4458999995 5599999999999986 67778865322 1122111111123333333321 23467999998753
Q ss_pred C---------hH--------hHHHHHHHHHHcCCcEEEEcccCCcc
Q 013384 170 N---------AP--------SRYMISDCCVVLGKPLVSGAALGLEG 198 (444)
Q Consensus 170 ~---------~~--------~r~~i~~~~~~~~~p~i~~~~~g~~G 198 (444)
. +. .-..|-++|.+.++.+|..++...+|
T Consensus 194 ~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~VYg 239 (436)
T PLN02166 194 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYG 239 (436)
T ss_pred eccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHHHhC
Confidence 1 10 01245567777788888877654444
No 265
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.60 E-value=0.24 Score=51.71 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=55.1
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccc---cCcceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRI---NSTVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rl---np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
+.+++|+|+|.|+.|..+|+.|+..|. ++.+.|.+.... ...++ ...+. .+... ....++.++|+||-.
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~~~~-~~~~l~~~~~gi~--~~~g~----~~~~~~~~~d~vv~s 74 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAELKPE-RVAQIGKMFDGLV--FYTGR----LKDALDNGFDILALS 74 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCch-hHHHHhhccCCcE--EEeCC----CCHHHHhCCCEEEEC
Confidence 457899999999999999999999996 688888654321 11121 11222 22211 112344689999976
Q ss_pred cCChHhHHHHHHHHHHcCCcEEE
Q 013384 168 TDNAPSRYMISDCCVVLGKPLVS 190 (444)
Q Consensus 168 ~D~~~~r~~i~~~~~~~~~p~i~ 190 (444)
..-++.. .+-..+++.++|+++
T Consensus 75 pgi~~~~-p~~~~a~~~~i~v~~ 96 (445)
T PRK04308 75 PGISERQ-PDIEAFKQNGGRVLG 96 (445)
T ss_pred CCCCCCC-HHHHHHHHcCCcEEE
Confidence 5433222 223344566677664
No 266
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.59 E-value=0.21 Score=53.04 Aligned_cols=36 Identities=31% Similarity=0.430 Sum_probs=31.8
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
+++++|+|+|.|+.|..+|+.|.+.|. ++.+.|...
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~ 40 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTRE 40 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCCC
Confidence 457789999999999999999999997 788888654
No 267
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.57 E-value=0.098 Score=45.72 Aligned_cols=71 Identities=23% Similarity=0.344 Sum_probs=46.4
Q ss_pred cEEEECC-CccHHHHHHHHHHcCCC-cEEEeeCCccccc----cccccc-C-cceEEEEeecCCcccHHhhcCCCcEEEE
Q 013384 95 SILVIGA-GGLGSPALLYLAACGVG-RLGIVDHDVVELN----NMHRIN-S-TVHIIEHREALRTSNALEILSQYEIVVD 166 (444)
Q Consensus 95 ~VlIvG~-GglGs~ia~~La~~Gvg-~i~lvD~D~V~~s----Nl~Rln-p-~~~v~~~~~~~~~~~~~~~~~~~DvVi~ 166 (444)
||.|||+ |.+|+.++..|...|+. +|.|+|.+.=... +|.-.. + ...+.... +..+.++++|+||-
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~------~~~~~~~~aDivvi 75 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS------GDYEALKDADIVVI 75 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE------SSGGGGTTESEEEE
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc------ccccccccccEEEE
Confidence 7999999 99999999999999985 5999998632110 111111 1 12222222 22445689999997
Q ss_pred ccCCh
Q 013384 167 ATDNA 171 (444)
Q Consensus 167 ~~D~~ 171 (444)
+...+
T Consensus 76 tag~~ 80 (141)
T PF00056_consen 76 TAGVP 80 (141)
T ss_dssp TTSTS
T ss_pred ecccc
Confidence 77654
No 268
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=93.54 E-value=0.55 Score=44.74 Aligned_cols=76 Identities=21% Similarity=0.228 Sum_probs=44.6
Q ss_pred HhhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCcccccccccccC-cceEEEEeecCCc--ccHHhhc-CCCcE
Q 013384 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINS-TVHIIEHREALRT--SNALEIL-SQYEI 163 (444)
Q Consensus 89 ~~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp-~~~v~~~~~~~~~--~~~~~~~-~~~Dv 163 (444)
+....++|+|+|+ |++|..+++.|+..|.. ++.+..+.-. +....+ ...++.+...+.. +...+.+ .++|+
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~~~R~~~~---~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~ 88 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKAGVRDVDK---AKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDA 88 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEEEecCHHH---HHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCE
Confidence 3455789999995 88999999999998853 4443222110 101111 1124444444443 2344555 58999
Q ss_pred EEEcc
Q 013384 164 VVDAT 168 (444)
Q Consensus 164 Vi~~~ 168 (444)
||.++
T Consensus 89 vi~~~ 93 (251)
T PLN00141 89 VICAT 93 (251)
T ss_pred EEECC
Confidence 99775
No 269
>PLN02602 lactate dehydrogenase
Probab=93.53 E-value=0.07 Score=53.95 Aligned_cols=71 Identities=13% Similarity=0.291 Sum_probs=46.4
Q ss_pred CcEEEECCCccHHHHHHHHHHcCC-CcEEEeeCCccccc----cccc---ccCcceEEEEeecCCcccHHhhcCCCcEEE
Q 013384 94 SSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELN----NMHR---INSTVHIIEHREALRTSNALEILSQYEIVV 165 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gv-g~i~lvD~D~V~~s----Nl~R---lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi 165 (444)
.||.|||+|.+|+.+|..|+..|+ .+|.|+|-+.--.. +|.- +.+.++|... ...+.++++|+||
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~-------~dy~~~~daDiVV 110 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILAS-------TDYAVTAGSDLCI 110 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeC-------CCHHHhCCCCEEE
Confidence 699999999999999999999998 57999997431110 0100 2222333221 1133478999999
Q ss_pred EccCCh
Q 013384 166 DATDNA 171 (444)
Q Consensus 166 ~~~D~~ 171 (444)
-+...+
T Consensus 111 itAG~~ 116 (350)
T PLN02602 111 VTAGAR 116 (350)
T ss_pred ECCCCC
Confidence 876543
No 270
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.52 E-value=0.084 Score=51.85 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=30.4
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcc
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V 128 (444)
++|.|||+|.+|+.+|..|+..|. +++++|.+.-
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHH
Confidence 579999999999999999999997 7999987653
No 271
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.50 E-value=0.18 Score=50.56 Aligned_cols=89 Identities=12% Similarity=0.204 Sum_probs=51.9
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-ccCcceEEEEeecCCcccHHhhc---CCCcEEEE
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-INSTVHIIEHREALRTSNALEIL---SQYEIVVD 166 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-lnp~~~v~~~~~~~~~~~~~~~~---~~~DvVi~ 166 (444)
..+.+|+|.|+|++|..+++.+...|+.++.++|.+.-... +.+ +.-...+.. ..++..++. ..+|+|||
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~-~a~~lGa~~vi~~-----~~~~~~~~~~~~g~~D~vid 241 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLS-LAREMGADKLVNP-----QNDDLDHYKAEKGYFDVSFE 241 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHH-HHHHcCCcEEecC-----CcccHHHHhccCCCCCEEEE
Confidence 35789999999999999999988999988888875432111 111 211111110 011111221 24899999
Q ss_pred ccCChHhHHHHHHHHHHcC
Q 013384 167 ATDNAPSRYMISDCCVVLG 185 (444)
Q Consensus 167 ~~D~~~~r~~i~~~~~~~~ 185 (444)
|+....+-....+.....|
T Consensus 242 ~~G~~~~~~~~~~~l~~~G 260 (343)
T PRK09880 242 VSGHPSSINTCLEVTRAKG 260 (343)
T ss_pred CCCCHHHHHHHHHHhhcCC
Confidence 9997654333333433333
No 272
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=93.43 E-value=0.15 Score=54.57 Aligned_cols=91 Identities=19% Similarity=0.229 Sum_probs=60.1
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|... .. .+.. ...+. ..+..++++.+|+|+.++
T Consensus 136 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~-~~---~~~~-~~g~~-------~~~l~ell~~aDiV~l~l 202 (526)
T PRK13581 136 VELYGKTLGIIGLGRIGSEVAKRAKAFGM-KVIAYDPYI-SP---ERAA-QLGVE-------LVSLDELLARADFITLHT 202 (526)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCC-Ch---hHHH-hcCCE-------EEcHHHHHhhCCEEEEcc
Confidence 35899999999999999999999999988 677777521 10 0000 00011 113567889999988776
Q ss_pred C-ChHhHHHHHHHHHH---cCCcEEEEc
Q 013384 169 D-NAPSRYMISDCCVV---LGKPLVSGA 192 (444)
Q Consensus 169 D-~~~~r~~i~~~~~~---~~~p~i~~~ 192 (444)
. ++.++.+++..... .+.-+|+.+
T Consensus 203 P~t~~t~~li~~~~l~~mk~ga~lIN~a 230 (526)
T PRK13581 203 PLTPETRGLIGAEELAKMKPGVRIINCA 230 (526)
T ss_pred CCChHhhcCcCHHHHhcCCCCeEEEECC
Confidence 5 56788888654333 233466654
No 273
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.43 E-value=0.26 Score=48.73 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=57.7
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc---------------c-cCcceEEEEeec-CCc---ccH
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR---------------I-NSTVHIIEHREA-LRT---SNA 154 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R---------------l-np~~~v~~~~~~-~~~---~~~ 154 (444)
+|.|||+|..|+.++.+|+..|. ++.++|.+.-....+.. . ++++-+...+.. ... +..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l 80 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDEL 80 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHH
Confidence 69999999999999999999996 58888875321111100 0 133333333221 111 111
Q ss_pred HhhcCCCcEEEEccC-ChHhHHHHHHHHHHcCCcEEEEcccCC
Q 013384 155 LEILSQYEIVVDATD-NAPSRYMISDCCVVLGKPLVSGAALGL 196 (444)
Q Consensus 155 ~~~~~~~DvVi~~~D-~~~~r~~i~~~~~~~~~p~i~~~~~g~ 196 (444)
...+..-++|||++- ++.....+.+.+...++.++++.+.|.
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~ 123 (301)
T PRK09599 81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG 123 (301)
T ss_pred HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence 222344467777743 334444556667777777777655543
No 274
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.41 E-value=0.09 Score=52.55 Aligned_cols=72 Identities=17% Similarity=0.264 Sum_probs=48.2
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccc--ccccc------ccCcceEEEEeecCCcccHHhhcCCCc
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVEL--NNMHR------INSTVHIIEHREALRTSNALEILSQYE 162 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~--sNl~R------lnp~~~v~~~~~~~~~~~~~~~~~~~D 162 (444)
++..||.|||+|.+|+.+|..|+..|+.++.|+|-+.-.. ..+.+ .....++... .+ .+-+.++|
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~------~d-~~~l~~aD 76 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGT------NN-YEDIAGSD 76 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEEC------CC-HHHhCCCC
Confidence 4668999999999999999999999987799999754321 11211 1112233221 12 23468999
Q ss_pred EEEEccC
Q 013384 163 IVVDATD 169 (444)
Q Consensus 163 vVi~~~D 169 (444)
+||.+..
T Consensus 77 iVI~tag 83 (321)
T PTZ00082 77 VVIVTAG 83 (321)
T ss_pred EEEECCC
Confidence 9998663
No 275
>PRK12861 malic enzyme; Reviewed
Probab=93.41 E-value=0.088 Score=58.12 Aligned_cols=121 Identities=12% Similarity=0.222 Sum_probs=77.7
Q ss_pred HHHhhhhccccCCCCCHHHH------------------HhhhcCcEEEECCCccHHHHHHHHHHcCCC--cEEEeeCCcc
Q 013384 69 DMIYRYSRHLLLPSFGVEGQ------------------SNLLKSSILVIGAGGLGSPALLYLAACGVG--RLGIVDHDVV 128 (444)
Q Consensus 69 ~~~~ry~Rq~~l~~~g~~~q------------------~~L~~~~VlIvG~GglGs~ia~~La~~Gvg--~i~lvD~D~V 128 (444)
+-.+||...+.+|-|..+-| .+|++.||++.|+|..|..+++.|...|+. +|.++|..-+
T Consensus 147 ~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gl 226 (764)
T PRK12861 147 TVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGV 226 (764)
T ss_pred HHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCe
Confidence 33578876555555653222 578999999999999999999999999996 9999997665
Q ss_pred ccccccc-ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCCh-HhHHHHHHHHHHcCCcEEEEccc
Q 013384 129 ELNNMHR-INSTVHIIEHREALRTSNALEILSQYEIVVDATDNA-PSRYMISDCCVVLGKPLVSGAAL 194 (444)
Q Consensus 129 ~~sNl~R-lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~-~~r~~i~~~~~~~~~p~i~~~~~ 194 (444)
=..+-.. +|+.-.--+.. -...+..+.++..|+.|.++..- =+..+|..++. .|+|++-+.
T Consensus 227 i~~~r~~~l~~~k~~~a~~--~~~~~L~eai~~advliG~S~~g~ft~e~v~~Ma~---~PIIFaLsN 289 (764)
T PRK12861 227 VYRGRTTLMDPDKERFAQE--TDARTLAEVIGGADVFLGLSAGGVLKAEMLKAMAA---RPLILALAN 289 (764)
T ss_pred eeCCCcccCCHHHHHHHhh--cCCCCHHHHHhcCCEEEEcCCCCCCCHHHHHHhcc---CCEEEECCC
Confidence 3332111 22211100000 11246778888899999887521 23455555553 788886543
No 276
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.36 E-value=0.24 Score=48.32 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=55.6
Q ss_pred cCcEEEECCCccHHHHHHHHHHcCC---CcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 93 KSSILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~~Gv---g~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
..+|.|||+|..|..++..|...|+ .++.++|...-+ -+..+.....+.. . .+..+...++|+||-|+-
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~--~~~~l~~~~g~~~-----~-~~~~e~~~~aDvVilav~ 74 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNET--RLQELHQKYGVKG-----T-HNKKELLTDANILFLAMK 74 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHH--HHHHHHHhcCceE-----e-CCHHHHHhcCCEEEEEeC
Confidence 3479999999999999999999983 456665532100 0011100001111 1 223455678999999998
Q ss_pred ChHhHHHHHHHHH--HcCCcEEEE
Q 013384 170 NAPSRYMISDCCV--VLGKPLVSG 191 (444)
Q Consensus 170 ~~~~r~~i~~~~~--~~~~p~i~~ 191 (444)
+......+..... ..+..+|+.
T Consensus 75 p~~~~~vl~~l~~~~~~~~liIs~ 98 (279)
T PRK07679 75 PKDVAEALIPFKEYIHNNQLIISL 98 (279)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEE
Confidence 8777776666542 234556664
No 277
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.33 E-value=0.24 Score=48.84 Aligned_cols=80 Identities=20% Similarity=0.227 Sum_probs=58.3
Q ss_pred HHhhhcCcEEEECCC-ccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEE
Q 013384 88 QSNLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVD 166 (444)
Q Consensus 88 q~~L~~~~VlIvG~G-glGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~ 166 (444)
...|++++|+|||.| -+|.+++.+|.+.|. .+++++.. ..+..+..+.+|+||.
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~------------------------t~~l~e~~~~ADIVIs 208 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSR------------------------STDAKALCRQADIVVA 208 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCC------------------------CCCHHHHHhcCCEEEE
Confidence 347899999999997 689999999999985 55554321 1256677789999999
Q ss_pred ccCChHhHHHHHHHHHHcCCcEEEEcccC
Q 013384 167 ATDNAPSRYMISDCCVVLGKPLVSGAALG 195 (444)
Q Consensus 167 ~~D~~~~r~~i~~~~~~~~~p~i~~~~~g 195 (444)
|+..+.. +.....+.|.-+|+.+...
T Consensus 209 avg~~~~---v~~~~ik~GaiVIDvgin~ 234 (301)
T PRK14194 209 AVGRPRL---IDADWLKPGAVVIDVGINR 234 (301)
T ss_pred ecCChhc---ccHhhccCCcEEEEecccc
Confidence 9987642 2223356677788887543
No 278
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.31 E-value=0.15 Score=49.95 Aligned_cols=33 Identities=33% Similarity=0.367 Sum_probs=29.6
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
.+|.|||+|..|+.+|..|+..|. +++++|.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999996 799999754
No 279
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=93.30 E-value=0.15 Score=50.97 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=59.1
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCC-cEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEE-E
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVV-D 166 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg-~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi-~ 166 (444)
..+++++|.|+|.|.+|..+|+.+. |+| ++...|.... |...-... .... ...++++++|+|+ .
T Consensus 142 ~~l~gktvGIiG~GrIG~avA~r~~--~Fgm~v~y~~~~~~---------~~~~~~~~-~~y~--~l~ell~~sDii~l~ 207 (324)
T COG1052 142 FDLRGKTLGIIGLGRIGQAVARRLK--GFGMKVLYYDRSPN---------PEAEKELG-ARYV--DLDELLAESDIISLH 207 (324)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHh--cCCCEEEEECCCCC---------hHHHhhcC-ceec--cHHHHHHhCCEEEEe
Confidence 4689999999999999999999998 554 4444443321 11111000 0111 1677889999865 5
Q ss_pred ccCChHhHHHHHHHHHHcCCc---EEEEc
Q 013384 167 ATDNAPSRYMISDCCVVLGKP---LVSGA 192 (444)
Q Consensus 167 ~~D~~~~r~~i~~~~~~~~~p---~i~~~ 192 (444)
|-.+++++.+||......-+| +|+.+
T Consensus 208 ~Plt~~T~hLin~~~l~~mk~ga~lVNta 236 (324)
T COG1052 208 CPLTPETRHLINAEELAKMKPGAILVNTA 236 (324)
T ss_pred CCCChHHhhhcCHHHHHhCCCCeEEEECC
Confidence 667889999999887665444 56543
No 280
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=93.29 E-value=0.15 Score=50.38 Aligned_cols=69 Identities=25% Similarity=0.284 Sum_probs=45.0
Q ss_pred EEEECCCccHHHHHHHHHHcCC-CcEEEeeCCccccccccc-----ccC--cceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 96 ILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHR-----INS--TVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 96 VlIvG~GglGs~ia~~La~~Gv-g~i~lvD~D~V~~sNl~R-----lnp--~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
|.|||+|.+|+.+|..|+..|+ .+|.|+|-+.=-..-+.. ..+ .+++.. . .+ .+-+.++|+||.+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-----~-~~-~~~l~~aDiVIit 73 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-----G-GD-YADAADADIVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-----C-CC-HHHhCCCCEEEEc
Confidence 5799999999999999999997 569999974311111111 111 122211 1 11 3466899999988
Q ss_pred cCCh
Q 013384 168 TDNA 171 (444)
Q Consensus 168 ~D~~ 171 (444)
...+
T Consensus 74 ag~p 77 (300)
T cd00300 74 AGAP 77 (300)
T ss_pred CCCC
Confidence 7754
No 281
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=93.28 E-value=0.072 Score=56.20 Aligned_cols=71 Identities=17% Similarity=0.261 Sum_probs=46.3
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-ccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-INSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
.+++++|+|+|+||+|..++..|+..|+ ++.++|.+.-....+.. ++. .... .++. ..+.++|+||+|+
T Consensus 329 ~~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~~~~~~~la~~~~~----~~~~----~~~~-~~l~~~DiVInat 398 (477)
T PRK09310 329 PLNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRTKAHAEALASRCQG----KAFP----LESL-PELHRIDIIINCL 398 (477)
T ss_pred CcCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcc----ceec----hhHh-cccCCCCEEEEcC
Confidence 3577899999999999999999999998 89988765322111111 110 0110 0111 1246899999998
Q ss_pred CC
Q 013384 169 DN 170 (444)
Q Consensus 169 D~ 170 (444)
..
T Consensus 399 P~ 400 (477)
T PRK09310 399 PP 400 (477)
T ss_pred CC
Confidence 54
No 282
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.27 E-value=0.23 Score=51.61 Aligned_cols=90 Identities=17% Similarity=0.323 Sum_probs=56.9
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc---ccCcceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR---INSTVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R---lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
+.+++|+|+|+|..|..+++.|.+.| ..+++.|.+... .|..- .-+.+.+.. .. .....+..+|+||-.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~-~~~~~~~~~~~~i~~~~--g~----~~~~~~~~~d~vV~S 76 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP-EGLAAQPLLLEGIEVEL--GS----HDDEDLAEFDLVVKS 76 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc-cchhhhhhhccCceeec--Cc----cchhccccCCEEEEC
Confidence 34899999999999999999999999 688998877666 33322 122332221 11 111445789999955
Q ss_pred cCChHhHHHHHHHHHHcCCcEE
Q 013384 168 TDNAPSRYMISDCCVVLGKPLV 189 (444)
Q Consensus 168 ~D~~~~r~~i~~~~~~~~~p~i 189 (444)
-.=+..-. +-+.+...++|++
T Consensus 77 PGi~~~~p-~v~~A~~~gi~i~ 97 (448)
T COG0771 77 PGIPPTHP-LVEAAKAAGIEII 97 (448)
T ss_pred CCCCCCCH-HHHHHHHcCCcEE
Confidence 33222222 3345566666655
No 283
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=93.23 E-value=0.23 Score=48.35 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=55.1
Q ss_pred hcCcEEEECCCccHHHHHHHHHHc--CCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 92 LKSSILVIGAGGLGSPALLYLAAC--GVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~--Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
+..||.|||+|.+|..+++.|... |+.-..+.|.+.-....+... +.......+..+++.+.|+|+.|+-
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~--------~g~~~~~~~~eell~~~D~Vvi~tp 76 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWG--------LRRPPPVVPLDQLATHADIVVEAAP 76 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHh--------cCCCcccCCHHHHhcCCCEEEECCC
Confidence 446899999999999999999864 443333556542111111000 0000011345566788999999997
Q ss_pred ChHhHHHHHHHHHHcCCcEEE
Q 013384 170 NAPSRYMISDCCVVLGKPLVS 190 (444)
Q Consensus 170 ~~~~r~~i~~~~~~~~~p~i~ 190 (444)
+... ..+...+.+.|++++.
T Consensus 77 ~~~h-~e~~~~aL~aGk~Vi~ 96 (271)
T PRK13302 77 ASVL-RAIVEPVLAAGKKAIV 96 (271)
T ss_pred cHHH-HHHHHHHHHcCCcEEE
Confidence 7544 4445666788888874
No 284
>PRK08605 D-lactate dehydrogenase; Validated
Probab=93.23 E-value=0.19 Score=50.42 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=56.6
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHH-cCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~-~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
..|++++|.|||+|.+|..+|+.|+. .|+ ++..+|...-.. .... + .. ..+..++++.+|+|+.+
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~-~V~~~d~~~~~~-----~~~~--~-----~~-~~~l~ell~~aDvIvl~ 207 (332)
T PRK08605 142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGS-DVVAYDPFPNAK-----AATY--V-----DY-KDTIEEAVEGADIVTLH 207 (332)
T ss_pred ceeCCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCCccHh-----HHhh--c-----cc-cCCHHHHHHhCCEEEEe
Confidence 35899999999999999999999953 444 566666432110 0000 0 01 13466778999999988
Q ss_pred cCC-hHhHHHHHHHHH---HcCCcEEEEcc
Q 013384 168 TDN-APSRYMISDCCV---VLGKPLVSGAA 193 (444)
Q Consensus 168 ~D~-~~~r~~i~~~~~---~~~~p~i~~~~ 193 (444)
+-. ..++.+++.... +.+.-+|+.+-
T Consensus 208 lP~t~~t~~li~~~~l~~mk~gailIN~sR 237 (332)
T PRK08605 208 MPATKYNHYLFNADLFKHFKKGAVFVNCAR 237 (332)
T ss_pred CCCCcchhhhcCHHHHhcCCCCcEEEECCC
Confidence 754 345555554222 33555777653
No 285
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=93.19 E-value=0.22 Score=49.21 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=27.4
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
+|.|||+|..|+.++.+|++.|. ++.++|.+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 69999999999999999999985 567777653
No 286
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.12 E-value=0.17 Score=49.30 Aligned_cols=91 Identities=18% Similarity=0.132 Sum_probs=56.7
Q ss_pred cCcEEEECCCccHHHHHHHHHHcCC---CcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 93 KSSILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~~Gv---g~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
+.+|.+||+|-+|..++..|...|. .+|.++|.+.-....+... -. +... .+..+.++++|+||-|+-
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~-~g--~~~~------~~~~e~~~~aDiIiLavk 72 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK-YG--ITIT------TNNNEVANSADILILSIK 72 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh-cC--cEEe------CCcHHHHhhCCEEEEEeC
Confidence 3579999999999999999999985 3588877643221111110 11 1111 123345678999999998
Q ss_pred ChHhHHHHHHHHH--HcCCcEEEEc
Q 013384 170 NAPSRYMISDCCV--VLGKPLVSGA 192 (444)
Q Consensus 170 ~~~~r~~i~~~~~--~~~~p~i~~~ 192 (444)
.......+.+..- +.+.-+|+..
T Consensus 73 P~~~~~vl~~l~~~~~~~~lvISi~ 97 (272)
T PRK12491 73 PDLYSSVINQIKDQIKNDVIVVTIA 97 (272)
T ss_pred hHHHHHHHHHHHHhhcCCcEEEEeC
Confidence 6666666665542 2334466643
No 287
>PRK06197 short chain dehydrogenase; Provisional
Probab=93.09 E-value=0.18 Score=49.65 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=33.2
Q ss_pred CCHHHHHhhhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 83 FGVEGQSNLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 83 ~g~~~q~~L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
|+...-..+++++|+|.| .||+|.++++.|+..|. ++.+++.+
T Consensus 6 ~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~ 49 (306)
T PRK06197 6 WTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRN 49 (306)
T ss_pred CCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 443333467888999998 58899999999999997 67776654
No 288
>PRK06545 prephenate dehydrogenase; Validated
Probab=93.06 E-value=0.22 Score=50.56 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=51.8
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHh
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPS 173 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~ 173 (444)
.+|.|||+|-+|..+++.|.+.|. .+.++|.|.-.. .+.+. ....+ .. .. ..+..+.++++|+||.|+-....
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~~~~~-~~~~a-~~~~~--~~-~~-~~~~~~~~~~aDlVilavP~~~~ 73 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYDPSAA-QLARA-LGFGV--ID-EL-AADLQRAAAEADLIVLAVPVDAT 73 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeCCCHH-HHHHH-hcCCC--Cc-cc-ccCHHHHhcCCCEEEEeCCHHHH
Confidence 369999999999999999999997 667777654221 11110 00000 00 01 12234556889999999987766
Q ss_pred HHHHHHHH
Q 013384 174 RYMISDCC 181 (444)
Q Consensus 174 r~~i~~~~ 181 (444)
+..+.+..
T Consensus 74 ~~vl~~l~ 81 (359)
T PRK06545 74 AALLAELA 81 (359)
T ss_pred HHHHHHHh
Confidence 66666665
No 289
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=93.03 E-value=0.1 Score=49.08 Aligned_cols=39 Identities=28% Similarity=0.248 Sum_probs=35.9
Q ss_pred HhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 89 SNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 89 ~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
..|++++|+|.|.|.+|..+++.|...|...+.+.|.+-
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 357899999999999999999999999999999999876
No 290
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=93.00 E-value=0.37 Score=46.60 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=53.4
Q ss_pred cCcEEEECCCccHHHHHHHHHHcCC---CcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 93 KSSILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~~Gv---g~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
+.+|.|||+|-+|+.++..|...|+ .++.++|.+.-. ..+.. . .+..+.+.++|+||-|+.
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~----------~~~~~-----~-~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN----------TPFVY-----L-QSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc----------CCeEE-----e-CChHHHHHhCCEEEEEeC
Confidence 4579999999999999999999984 247776653211 01111 1 122344578999999988
Q ss_pred ChHhHHHHHHHHHH-cCCcEEE
Q 013384 170 NAPSRYMISDCCVV-LGKPLVS 190 (444)
Q Consensus 170 ~~~~r~~i~~~~~~-~~~p~i~ 190 (444)
....+..+.+.... ....+|+
T Consensus 67 p~~~~~vl~~i~~~l~~~~iIS 88 (260)
T PTZ00431 67 PDLAGKVLLEIKPYLGSKLLIS 88 (260)
T ss_pred HHHHHHHHHHHHhhccCCEEEE
Confidence 77777777665422 2344554
No 291
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.98 E-value=0.52 Score=47.92 Aligned_cols=102 Identities=18% Similarity=0.135 Sum_probs=59.6
Q ss_pred hcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCc-ccHHhhcCCCcEEEEccC
Q 013384 92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRT-SNALEILSQYEIVVDATD 169 (444)
Q Consensus 92 ~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~-~~~~~~~~~~DvVi~~~D 169 (444)
++++|+|.|+ |-+|+++++.|...|. +++.+|...- ..+.. ....++.+...+.. +....++.++|+||.+.-
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r~~~--~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa 94 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDWKKN--EHMSE--DMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAA 94 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEeccc--ccccc--ccccceEEECCCCCHHHHHHHHhCCCEEEEccc
Confidence 4578999996 7799999999999885 6777774210 00000 00012333334432 233455678999998862
Q ss_pred Ch------------------HhHHHHHHHHHHcCC-cEEEEcccCCcc
Q 013384 170 NA------------------PSRYMISDCCVVLGK-PLVSGAALGLEG 198 (444)
Q Consensus 170 ~~------------------~~r~~i~~~~~~~~~-p~i~~~~~g~~G 198 (444)
.. ..-..|-++|.+.+. .+|+.+....+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg 142 (370)
T PLN02695 95 DMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYP 142 (370)
T ss_pred ccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcC
Confidence 11 111234456667664 677776555544
No 292
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.97 E-value=0.45 Score=49.21 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=48.0
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-ccCcce--EE-----EE-eecCC-cccHHhhcCCCcEE
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-INSTVH--II-----EH-REALR-TSNALEILSQYEIV 164 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-lnp~~~--v~-----~~-~~~~~-~~~~~~~~~~~DvV 164 (444)
+|.|||+|-+|..+|..|+..|. +++++|.|.-....+++ .+|..+ +. .. ...+. ..+..+.++++|+|
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 69999999999999999999997 68888876544433443 111100 00 00 00011 12334456889999
Q ss_pred EEccCCh
Q 013384 165 VDATDNA 171 (444)
Q Consensus 165 i~~~D~~ 171 (444)
|-|+.++
T Consensus 81 ii~vpt~ 87 (411)
T TIGR03026 81 IICVPTP 87 (411)
T ss_pred EEEeCCC
Confidence 9998876
No 293
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=92.96 E-value=0.13 Score=51.61 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=50.3
Q ss_pred cCcEEEECCCccHHHHHHHHH-HcCCCcEEEeeCCccccccccc-ccC--cceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 93 KSSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDVVELNNMHR-INS--TVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La-~~Gvg~i~lvD~D~V~~sNl~R-lnp--~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
.++|+|+|+|+.|...++.|+ ..++.+++|++.+.-....+.. +.. .+++.. .++..+.+.++|+|+.||
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~------~~~~~~av~~aDiVvtaT 202 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTA------ATDPRAAMSGADIIVTTT 202 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEE------eCCHHHHhccCCEEEEec
Confidence 468999999999999999997 5789999999775543333322 221 122222 134566778999999998
Q ss_pred CC
Q 013384 169 DN 170 (444)
Q Consensus 169 D~ 170 (444)
-.
T Consensus 203 ~s 204 (326)
T TIGR02992 203 PS 204 (326)
T ss_pred CC
Confidence 65
No 294
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=92.92 E-value=0.23 Score=41.38 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=56.7
Q ss_pred cEEEECCCccHHHHHHHHHHc--CCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcC--CCcEEEEccCC
Q 013384 95 SILVIGAGGLGSPALLYLAAC--GVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILS--QYEIVVDATDN 170 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~--Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~--~~DvVi~~~D~ 170 (444)
||+|||+|..|...+..+... ++.-..++|.+.-......+.. .+. .+ .+..++++ +.|+|+.|+.+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~-~~~--~~------~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY-GIP--VY------TDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT-TSE--EE------SSHHHHHHHTTESEEEEESSG
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh-ccc--ch------hHHHHHHHhhcCCEEEEecCC
Confidence 699999999999999888887 3434457787653322221111 111 22 23455554 79999988877
Q ss_pred hHhHHHHHHHHHHcCCcEEE
Q 013384 171 APSRYMISDCCVVLGKPLVS 190 (444)
Q Consensus 171 ~~~r~~i~~~~~~~~~p~i~ 190 (444)
.....+-..|.+.|++++.
T Consensus 73 -~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 73 -SSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp -GGHHHHHHHHHHTTSEEEE
T ss_pred -cchHHHHHHHHHcCCEEEE
Confidence 5566777788888887664
No 295
>PRK12367 short chain dehydrogenase; Provisional
Probab=92.89 E-value=0.34 Score=46.29 Aligned_cols=41 Identities=27% Similarity=0.267 Sum_probs=34.6
Q ss_pred HHHHhhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 86 EGQSNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 86 ~~q~~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
-.|.+|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.
T Consensus 7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~ 48 (245)
T PRK12367 7 MAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSK 48 (245)
T ss_pred hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCc
Confidence 4688999999999985 6799999999999997 677777553
No 296
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.87 E-value=0.26 Score=51.90 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=54.1
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccc-cccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVEL-NNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~-sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
+++++|+|+|+|-.|..+++.|.+.|.. +++.|.+.... ....++...+ ..... ....+.+.++|+||-...
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~~~~~~~~~~~~l~~~~--~~~~~----~~~~~~~~~~d~vV~Spg 78 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPA-QALTLFCNAVEAREVGALADAA--LLVET----EASAQRLAAFDVVVKSPG 78 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcCCCcccchHHHHHhhcC--EEEeC----CCChHHccCCCEEEECCC
Confidence 4678999999999999999999999974 77788654321 1101111111 11111 111344578999996543
Q ss_pred ChHhHHHHHHHHHHcCCcEEE
Q 013384 170 NAPSRYMISDCCVVLGKPLVS 190 (444)
Q Consensus 170 ~~~~r~~i~~~~~~~~~p~i~ 190 (444)
=+.. ..+-..+++.++|+++
T Consensus 79 I~~~-~p~~~~a~~~~i~i~~ 98 (468)
T PRK04690 79 ISPY-RPEALAAAARGTPFIG 98 (468)
T ss_pred CCCC-CHHHHHHHHcCCcEEE
Confidence 2222 1233345666677665
No 297
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=92.86 E-value=0.084 Score=45.34 Aligned_cols=89 Identities=21% Similarity=0.174 Sum_probs=45.6
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc---ccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR---INSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R---lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
..-+|.|||+|-+|..+++.|..+|.. +.-|-.-. ..+..| .-+...+ .+..+.+..+|+||-++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v~srs--~~sa~~a~~~~~~~~~---------~~~~~~~~~aDlv~iav 76 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHE-VVGVYSRS--PASAERAAAFIGAGAI---------LDLEEILRDADLVFIAV 76 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSE-EEEESSCH--H-HHHHHHC--TT--------------TTGGGCC-SEEEE-S
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCe-EEEEEeCC--cccccccccccccccc---------cccccccccCCEEEEEe
Confidence 345799999999999999999999963 33321111 111111 2222111 12345678899999888
Q ss_pred CChHhHHHHHHHHHH----cCCcEEEEc
Q 013384 169 DNAPSRYMISDCCVV----LGKPLVSGA 192 (444)
Q Consensus 169 D~~~~r~~i~~~~~~----~~~p~i~~~ 192 (444)
-+-.......+.+.. .++-+++++
T Consensus 77 pDdaI~~va~~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 77 PDDAIAEVAEQLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp -CCHHHHHHHHHHCC--S-TT-EEEES-
T ss_pred chHHHHHHHHHHHHhccCCCCcEEEECC
Confidence 655555444444432 344455543
No 298
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=92.83 E-value=0.52 Score=45.76 Aligned_cols=89 Identities=13% Similarity=0.085 Sum_probs=53.1
Q ss_pred CcEEEECCCccHHHHHHHHHHc-CCCcEEEeeCCccccccccc-ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCCh
Q 013384 94 SSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHR-INSTVHIIEHREALRTSNALEILSQYEIVVDATDNA 171 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~-Gvg~i~lvD~D~V~~sNl~R-lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~ 171 (444)
.||.|+|||.+|..+++.|... ++.-..+++.+.-.. .... +... +..+ .+..++-.+.|+|++|+...
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~-~~~~~~~~~--~~~~------~d~~~l~~~~DvVve~t~~~ 72 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSID-AVRRALGEA--VRVV------SSVDALPQRPDLVVECAGHA 72 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHH-HHhhhhccC--Ceee------CCHHHhccCCCEEEECCCHH
Confidence 3799999999999999999875 343334444321100 0000 1111 1111 12223335699999999876
Q ss_pred HhHHHHHHHHHHcCCcEEEEc
Q 013384 172 PSRYMISDCCVVLGKPLVSGA 192 (444)
Q Consensus 172 ~~r~~i~~~~~~~~~p~i~~~ 192 (444)
.. ..+...+.+.|++++..+
T Consensus 73 ~~-~e~~~~aL~aGk~Vvi~s 92 (265)
T PRK13303 73 AL-KEHVVPILKAGIDCAVIS 92 (265)
T ss_pred HH-HHHHHHHHHcCCCEEEeC
Confidence 55 455666778899998654
No 299
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.80 E-value=0.3 Score=47.64 Aligned_cols=90 Identities=18% Similarity=0.204 Sum_probs=56.7
Q ss_pred cEEEECCCccHHHHHHHHHHcCC---CcEEEeeCCcccccccccccCcc-eEEEEeecCCcccHHhhcCCCcEEEEccCC
Q 013384 95 SILVIGAGGLGSPALLYLAACGV---GRLGIVDHDVVELNNMHRINSTV-HIIEHREALRTSNALEILSQYEIVVDATDN 170 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gv---g~i~lvD~D~V~~sNl~Rlnp~~-~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~ 170 (444)
+|.|||+|.+|..++..|...|. .++.++|.+.-+. +..+.... .+. +. .+..+.+.++|+||.|+-.
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~--~~~l~~~~~~~~-----~~-~~~~e~~~~aDvVilavpp 74 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEH--FNQLYDKYPTVE-----LA-DNEAEIFTKCDHSFICVPP 74 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHH--HHHHHHHcCCeE-----Ee-CCHHHHHhhCCEEEEecCH
Confidence 69999999999999999999983 5788887653211 11111100 011 11 2334556789999999887
Q ss_pred hHhHHHHHHHH--HHcCCcEEEEc
Q 013384 171 APSRYMISDCC--VVLGKPLVSGA 192 (444)
Q Consensus 171 ~~~r~~i~~~~--~~~~~p~i~~~ 192 (444)
...+..+.+.. ...++.+|+..
T Consensus 75 ~~~~~vl~~l~~~l~~~~~ivS~~ 98 (277)
T PRK06928 75 LAVLPLLKDCAPVLTPDRHVVSIA 98 (277)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEC
Confidence 66666666553 22455677643
No 300
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.79 E-value=0.36 Score=50.53 Aligned_cols=94 Identities=17% Similarity=0.091 Sum_probs=54.6
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccc-cc-ccc-cCcceEEEEeecCCcccHHhhcCCCcEEEEccCC
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELN-NM-HRI-NSTVHIIEHREALRTSNALEILSQYEIVVDATDN 170 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~s-Nl-~Rl-np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~ 170 (444)
++|+|+|+|+.|..+|..|.+.|. .++++|....... .+ ..+ .-.+++.. ......++....+.++|+||-...-
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~~~~~~~~~l~~~gi~~~~-g~~~~~~~~~~~~~~~d~vv~s~gi 78 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSPELLERQQELEQEGITVKL-GKPLELESFQPWLDQPDLVVVSPGI 78 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCchhhHHHHHHHHHcCCEEEE-CCccchhhhhHHhhcCCEEEECCCC
Confidence 479999999999999999999997 7888886533211 10 011 11233321 1111111222346789999865443
Q ss_pred hHhHHHHHHHHHHcCCcEEE
Q 013384 171 APSRYMISDCCVVLGKPLVS 190 (444)
Q Consensus 171 ~~~r~~i~~~~~~~~~p~i~ 190 (444)
+... .+-..+++.++|+++
T Consensus 79 ~~~~-~~~~~a~~~~i~v~~ 97 (459)
T PRK02705 79 PWDH-PTLVELRERGIEVIG 97 (459)
T ss_pred CCCC-HHHHHHHHcCCcEEE
Confidence 3322 333455677777776
No 301
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=92.67 E-value=0.2 Score=50.99 Aligned_cols=123 Identities=18% Similarity=0.233 Sum_probs=76.4
Q ss_pred CCCCHHHHhhhhccccCCCCCHHHH------------------HhhhcCcEEEECCCccHHHHHHHHHHcCCC--cEEEe
Q 013384 64 YGLSPDMIYRYSRHLLLPSFGVEGQ------------------SNLLKSSILVIGAGGLGSPALLYLAACGVG--RLGIV 123 (444)
Q Consensus 64 ~~l~~~~~~ry~Rq~~l~~~g~~~q------------------~~L~~~~VlIvG~GglGs~ia~~La~~Gvg--~i~lv 123 (444)
..+--++..||.-. +|-|..+-| ++|++.+|++.|+|+.|..++..|..+|+. +|.++
T Consensus 154 ~cf~ie~~lr~~~~--IPvFhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~ 231 (432)
T COG0281 154 RCFAIEERLRYRMN--IPVFHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVV 231 (432)
T ss_pred hhhHHHHHHhhcCC--CCcccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEE
Confidence 34555666777644 444754322 589999999999999999999999999998 99999
Q ss_pred eCCcccccccc--cccCcceEEE--EeecCCcccHHhhcCCCcEEEEccCChH-hHHHHHHHHHHcCCcEEEEccc
Q 013384 124 DHDVVELNNMH--RINSTVHIIE--HREALRTSNALEILSQYEIVVDATDNAP-SRYMISDCCVVLGKPLVSGAAL 194 (444)
Q Consensus 124 D~D~V~~sNl~--Rlnp~~~v~~--~~~~~~~~~~~~~~~~~DvVi~~~D~~~-~r~~i~~~~~~~~~p~i~~~~~ 194 (444)
|.--+-..+.. .+|+.---.. ....... ...+.+.|+.|.|+..-. +..++..++.. |+|.+-++
T Consensus 232 D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~---~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~---PiIfalaN 301 (432)
T COG0281 232 DRKGLLYDGREDLTMNQKKYAKAIEDTGERTL---DLALAGADVLIGVSGVGAFTEEMVKEMAKH---PIIFALAN 301 (432)
T ss_pred ecCCcccCCCcccccchHHHHHHHhhhccccc---cccccCCCEEEEcCCCCCcCHHHHHHhccC---CEEeecCC
Confidence 98654332221 1222110000 0000000 225678999999887532 34455555433 88876543
No 302
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.64 E-value=0.3 Score=47.74 Aligned_cols=79 Identities=20% Similarity=0.215 Sum_probs=57.4
Q ss_pred HhhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 89 ~~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
..|++++|+|||. |-+|.+++.+|...|. .+++. +. ...+..+..+++|+||.|
T Consensus 154 i~l~Gk~v~vIG~S~ivG~Pla~lL~~~ga-tVtv~----------------------~s--~t~~l~~~~~~ADIVI~a 208 (284)
T PRK14179 154 VELEGKHAVVIGRSNIVGKPMAQLLLDKNA-TVTLT----------------------HS--RTRNLAEVARKADILVVA 208 (284)
T ss_pred CCCCCCEEEEECCCCcCcHHHHHHHHHCCC-EEEEE----------------------CC--CCCCHHHHHhhCCEEEEe
Confidence 4689999999999 7789999999999885 44442 11 123566778999999999
Q ss_pred cCChHhHHHHHHHHHHcCCcEEEEcccC
Q 013384 168 TDNAPSRYMISDCCVVLGKPLVSGAALG 195 (444)
Q Consensus 168 ~D~~~~r~~i~~~~~~~~~p~i~~~~~g 195 (444)
+..+.. +.....+.|.-+|+.|...
T Consensus 209 vg~~~~---v~~~~ik~GavVIDvgin~ 233 (284)
T PRK14179 209 IGRGHF---VTKEFVKEGAVVIDVGMNR 233 (284)
T ss_pred cCcccc---CCHHHccCCcEEEEeccee
Confidence 988754 2222356677788887554
No 303
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.64 E-value=0.26 Score=49.02 Aligned_cols=80 Identities=20% Similarity=0.300 Sum_probs=47.7
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhc--CCCcEEEEccC
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEIL--SQYEIVVDATD 169 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~--~~~DvVi~~~D 169 (444)
.+.+|+|.|+|++|..+++.+...|+.++..+|.+.-...-+..+.-..-+...... .+...++. ..+|+||||+.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~--~~~~~~~~~~~~~d~vid~~g 240 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDD--VQEIRELTSGAGADVAIECSG 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcch--HHHHHHHhCCCCCCEEEECCC
Confidence 477999999999999999999999998788877543221111112111111111100 11122222 26999999998
Q ss_pred ChHh
Q 013384 170 NAPS 173 (444)
Q Consensus 170 ~~~~ 173 (444)
....
T Consensus 241 ~~~~ 244 (339)
T cd08239 241 NTAA 244 (339)
T ss_pred CHHH
Confidence 7654
No 304
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.60 E-value=0.74 Score=45.23 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=46.5
Q ss_pred cEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCc-ccHHhhcCCCcEEEEcc
Q 013384 95 SILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRT-SNALEILSQYEIVVDAT 168 (444)
Q Consensus 95 ~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~-~~~~~~~~~~DvVi~~~ 168 (444)
+|+|.| +|.+|+.+++.|+..|. ++..+|...-...++. ...++.+...+.. +...+++.+.|+||.+.
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~----~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRPTSDRRNLE----GLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEecCccccccc----cCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 689998 58899999999999995 7888876433222211 1234444445543 34556778899999875
No 305
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.54 E-value=0.27 Score=51.28 Aligned_cols=92 Identities=16% Similarity=0.290 Sum_probs=53.5
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccc-cccccC-cceEEEEeecCCcccHHhhcCC-CcEEEEc
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNN-MHRINS-TVHIIEHREALRTSNALEILSQ-YEIVVDA 167 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sN-l~Rlnp-~~~v~~~~~~~~~~~~~~~~~~-~DvVi~~ 167 (444)
+++++|+|+|.|++|..+|+.|+..|. ++.+.|.+...... ..++.. .+.+ +... ...+++.. +|+||..
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~~~~~~~~~l~~~g~~~--~~~~----~~~~~~~~~~d~vV~s 75 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPFSENPEAQELLEEGIKV--ICGS----HPLELLDEDFDLMVKN 75 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCccchhHHHHHHhcCCEE--EeCC----CCHHHhcCcCCEEEEC
Confidence 567899999999999999999999997 68888865422111 111211 1222 1111 11223343 8999976
Q ss_pred cCChHhHHHHHHHHHHcCCcEEE
Q 013384 168 TDNAPSRYMISDCCVVLGKPLVS 190 (444)
Q Consensus 168 ~D~~~~r~~i~~~~~~~~~p~i~ 190 (444)
..-+.. ..+-+.+++.++|+++
T Consensus 76 ~gi~~~-~~~~~~a~~~~i~v~~ 97 (447)
T PRK02472 76 PGIPYT-NPMVEKALEKGIPIIT 97 (447)
T ss_pred CCCCCC-CHHHHHHHHCCCcEEe
Confidence 522211 1234455666777664
No 306
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.53 E-value=0.21 Score=49.47 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=29.9
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcc
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V 128 (444)
+|.|||+|-+|+.++..|+..|. +++++|.+.-
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGH-EVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCC-eeEEEeCCHH
Confidence 69999999999999999999997 7999998753
No 307
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.50 E-value=0.36 Score=52.57 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=62.5
Q ss_pred cCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHh--hcCCCcEEEEccCC
Q 013384 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALE--ILSQYEIVVDATDN 170 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~--~~~~~DvVi~~~D~ 170 (444)
+.+|+|+|.|.+|..+++.|...|+ +++++|.|.-....+.+. ....+..+.+..+..+ -++++|+||.++|+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~----g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d 474 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKY----GYKVYYGDATQLELLRAAGAEKAEAIVITCNE 474 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhC----CCeEEEeeCCCHHHHHhcCCccCCEEEEEeCC
Confidence 5689999999999999999999998 689999885433222211 2234444444433322 25789999999999
Q ss_pred hHhHHHHHHHHHHcC
Q 013384 171 APSRYMISDCCVVLG 185 (444)
Q Consensus 171 ~~~r~~i~~~~~~~~ 185 (444)
.+.-..+-..+++.+
T Consensus 475 ~~~n~~i~~~~r~~~ 489 (601)
T PRK03659 475 PEDTMKIVELCQQHF 489 (601)
T ss_pred HHHHHHHHHHHHHHC
Confidence 887777777777653
No 308
>PLN02688 pyrroline-5-carboxylate reductase
Probab=92.47 E-value=0.38 Score=46.38 Aligned_cols=86 Identities=20% Similarity=0.244 Sum_probs=52.1
Q ss_pred cEEEECCCccHHHHHHHHHHcCC---CcEEEe-eCCccccccccccc-CcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 95 SILVIGAGGLGSPALLYLAACGV---GRLGIV-DHDVVELNNMHRIN-STVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gv---g~i~lv-D~D~V~~sNl~Rln-p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
+|.+||+|.+|+.++..|...|. ..|.++ |.+.- ...++. ..+. . . .+..+..+++|+||.|+.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~---~~~~~~~~g~~--~-----~-~~~~e~~~~aDvVil~v~ 70 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPA---RRDVFQSLGVK--T-----A-ASNTEVVKSSDVIILAVK 70 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHH---HHHHHHHcCCE--E-----e-CChHHHHhcCCEEEEEEC
Confidence 69999999999999999999985 256665 43211 111111 1111 1 1 223345678999999997
Q ss_pred ChHhHHHHHHHHH--HcCCcEEEE
Q 013384 170 NAPSRYMISDCCV--VLGKPLVSG 191 (444)
Q Consensus 170 ~~~~r~~i~~~~~--~~~~p~i~~ 191 (444)
....+..+.+... ..+..+|+.
T Consensus 71 ~~~~~~vl~~l~~~~~~~~~iIs~ 94 (266)
T PLN02688 71 PQVVKDVLTELRPLLSKDKLLVSV 94 (266)
T ss_pred cHHHHHHHHHHHhhcCCCCEEEEe
Confidence 6566666655432 233445543
No 309
>PRK08818 prephenate dehydrogenase; Provisional
Probab=92.41 E-value=0.48 Score=48.25 Aligned_cols=70 Identities=10% Similarity=0.135 Sum_probs=47.2
Q ss_pred hhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 91 L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
+.+.+|+|||. |-+|..+++.|....-.+|+.+|.+ +. ...+..+.++++|+||-|+-
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~--d~-------------------~~~~~~~~v~~aDlVilavP 60 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPA--DP-------------------GSLDPATLLQRADVLIFSAP 60 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCC--cc-------------------ccCCHHHHhcCCCEEEEeCC
Confidence 35678999999 9999999999986533356666642 10 01123445677888888876
Q ss_pred ChHhHHHHHHHH
Q 013384 170 NAPSRYMISDCC 181 (444)
Q Consensus 170 ~~~~r~~i~~~~ 181 (444)
-..+...|.+.+
T Consensus 61 v~~~~~~l~~l~ 72 (370)
T PRK08818 61 IRHTAALIEEYV 72 (370)
T ss_pred HHHHHHHHHHHh
Confidence 666666666655
No 310
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.39 E-value=0.35 Score=47.63 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=57.1
Q ss_pred hhhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 90 ~L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
.+++++|+||| .|-+|.++|.+|...|. .+++++. . + .+..+..+.+|+||.|+
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~---------------------r--T-~~l~e~~~~ADIVIsav 209 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHS---------------------R--T-RDLPAVCRRADILVAAV 209 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECC---------------------C--C-CCHHHHHhcCCEEEEec
Confidence 68999999999 88899999999999885 5555421 1 1 13466778999999999
Q ss_pred CChHhHHHHHHHHHHcCCcEEEEcccC
Q 013384 169 DNAPSRYMISDCCVVLGKPLVSGAALG 195 (444)
Q Consensus 169 D~~~~r~~i~~~~~~~~~p~i~~~~~g 195 (444)
.++. .+.....+.|.-+|+.|...
T Consensus 210 g~~~---~v~~~~lk~GavVIDvGin~ 233 (296)
T PRK14188 210 GRPE---MVKGDWIKPGATVIDVGINR 233 (296)
T ss_pred CChh---hcchheecCCCEEEEcCCcc
Confidence 8865 33344456677788877543
No 311
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=92.37 E-value=0.27 Score=51.76 Aligned_cols=102 Identities=17% Similarity=0.210 Sum_probs=60.0
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccc-----------c-------c----cCcceEEEEe-ecCC
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMH-----------R-------I----NSTVHIIEHR-EALR 150 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~-----------R-------l----np~~~v~~~~-~~~~ 150 (444)
++|.|||+|..|+.+|.+|+..|. +++++|.+.-....+. . . .|.+-+.... ....
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v 80 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV 80 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence 579999999999999999999997 7888887433211111 0 1 1221111111 1111
Q ss_pred c---ccHHhhcCCCcEEEEccCC-hHhHHHHHHHHHHcCCcEEEEcccCC
Q 013384 151 T---SNALEILSQYEIVVDATDN-APSRYMISDCCVVLGKPLVSGAALGL 196 (444)
Q Consensus 151 ~---~~~~~~~~~~DvVi~~~D~-~~~r~~i~~~~~~~~~p~i~~~~~g~ 196 (444)
. +.....+..=|+|||++-. +..-....+.+...|+.+|++++.|-
T Consensus 81 ~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG 130 (470)
T PTZ00142 81 DETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG 130 (470)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence 1 1122334556788888754 33333444667778888888776653
No 312
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.36 E-value=0.43 Score=46.71 Aligned_cols=79 Identities=22% Similarity=0.290 Sum_probs=59.1
Q ss_pred HhhhcCcEEEECCCcc-HHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 89 SNLLKSSILVIGAGGL-GSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 89 ~~L~~~~VlIvG~Ggl-Gs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
-.|++++|+|||.|.+ |.+++..|...|. .+++++. ...+..+.++.+|+||.+
T Consensus 154 i~l~Gk~vvViGrs~iVGkPla~lL~~~~a-tVt~~hs------------------------~t~~l~~~~~~ADIVV~a 208 (285)
T PRK14189 154 IPLRGAHAVVIGRSNIVGKPMAMLLLQAGA-TVTICHS------------------------KTRDLAAHTRQADIVVAA 208 (285)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEecC------------------------CCCCHHHHhhhCCEEEEc
Confidence 3579999999999997 9999999998874 4444221 124566778999999999
Q ss_pred cCChHhHHHHHHHHHHcCCcEEEEcccC
Q 013384 168 TDNAPSRYMISDCCVVLGKPLVSGAALG 195 (444)
Q Consensus 168 ~D~~~~r~~i~~~~~~~~~p~i~~~~~g 195 (444)
+..+. .+.....+.+.-+|++|...
T Consensus 209 vG~~~---~i~~~~ik~gavVIDVGin~ 233 (285)
T PRK14189 209 VGKRN---VLTADMVKPGATVIDVGMNR 233 (285)
T ss_pred CCCcC---ccCHHHcCCCCEEEEccccc
Confidence 98654 35555566777788888654
No 313
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=92.36 E-value=0.8 Score=44.64 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=45.6
Q ss_pred cEEEECC-CccHHHHHHHHHHcCC-CcEEEeeCCccc--ccccccccCcceEEEEeecCCc-ccHHhhcCC--CcEEEEc
Q 013384 95 SILVIGA-GGLGSPALLYLAACGV-GRLGIVDHDVVE--LNNMHRINSTVHIIEHREALRT-SNALEILSQ--YEIVVDA 167 (444)
Q Consensus 95 ~VlIvG~-GglGs~ia~~La~~Gv-g~i~lvD~D~V~--~sNl~Rlnp~~~v~~~~~~~~~-~~~~~~~~~--~DvVi~~ 167 (444)
+|+|.|+ |.+|..+++.|...|- -++.++|..... ...+..+...-.++.+...+.. +...++++. +|+||.+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~ 80 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHF 80 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEc
Confidence 5899985 8899999999999874 467777753221 1111111111123444445543 334556665 8999988
Q ss_pred cC
Q 013384 168 TD 169 (444)
Q Consensus 168 ~D 169 (444)
..
T Consensus 81 a~ 82 (317)
T TIGR01181 81 AA 82 (317)
T ss_pred cc
Confidence 74
No 314
>PLN02572 UDP-sulfoquinovose synthase
Probab=92.34 E-value=0.77 Score=48.00 Aligned_cols=37 Identities=35% Similarity=0.432 Sum_probs=30.9
Q ss_pred HhhhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 89 SNLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 89 ~~L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.++++++|+|.| +|.+|+.+++.|+..|. ++.++|..
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~~ 80 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDNL 80 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEecc
Confidence 467778899999 57799999999999985 68888853
No 315
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.32 E-value=0.42 Score=47.04 Aligned_cols=93 Identities=22% Similarity=0.303 Sum_probs=59.7
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCc--cccc-cccc---ccCcceEEEEeecCCcccHHhh-cCCCcEE
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV--VELN-NMHR---INSTVHIIEHREALRTSNALEI-LSQYEIV 164 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~--V~~s-Nl~R---lnp~~~v~~~~~~~~~~~~~~~-~~~~DvV 164 (444)
..++|+|.|+|++|..+++---.+|.++|.=||-.. .+.. -++- +||. ...- .+. +-..+. -.++|+-
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~-d~~~---~i~-evi~EmTdgGvDys 266 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPK-DLKK---PIQ-EVIIEMTDGGVDYS 266 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChh-hccc---cHH-HHHHHHhcCCceEE
Confidence 568899999999999999999999999999998421 1100 0000 5664 1111 111 111111 1579999
Q ss_pred EEccCChHhHHHHHHHHHHc-CCcEE
Q 013384 165 VDATDNAPSRYMISDCCVVL-GKPLV 189 (444)
Q Consensus 165 i~~~D~~~~r~~i~~~~~~~-~~p~i 189 (444)
++|+.++.+...--..|+.- |+-++
T Consensus 267 fEc~G~~~~m~~al~s~h~GwG~sv~ 292 (375)
T KOG0022|consen 267 FECIGNVSTMRAALESCHKGWGKSVV 292 (375)
T ss_pred EEecCCHHHHHHHHHHhhcCCCeEEE
Confidence 99999998876666666654 55443
No 316
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=92.30 E-value=0.41 Score=47.22 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=27.5
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
+|.|||+|-+|..++.+|+..|. .+.++|.+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~ 32 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVN 32 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECC
Confidence 69999999999999999999986 57788765
No 317
>PRK08264 short chain dehydrogenase; Validated
Probab=92.28 E-value=0.45 Score=44.58 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=31.7
Q ss_pred hhhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
++++++|+|.| .|++|..+++.|++.|..++.+++.+
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 36778999998 58899999999999998788888754
No 318
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.18 E-value=0.38 Score=46.93 Aligned_cols=76 Identities=17% Similarity=0.135 Sum_probs=48.7
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccc-cCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHh
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRI-NSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPS 173 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rl-np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~ 173 (444)
+|.|||+|.+|..++..|...|. ++.++|.+.- .+.+. .... +. ... .+ .+.+.++|+||.|+-....
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~---~~~~a~~~g~-~~----~~~-~~-~~~~~~aDlVilavp~~~~ 70 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRES---TCERAIERGL-VD----EAS-TD-LSLLKDCDLVILALPIGLL 70 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHH---HHHHHHHCCC-cc----ccc-CC-HhHhcCCCEEEEcCCHHHH
Confidence 69999999999999999999986 7888887532 22221 0000 00 011 11 2346789999999876555
Q ss_pred HHHHHHHH
Q 013384 174 RYMISDCC 181 (444)
Q Consensus 174 r~~i~~~~ 181 (444)
...+.+..
T Consensus 71 ~~~~~~l~ 78 (279)
T PRK07417 71 LPPSEQLI 78 (279)
T ss_pred HHHHHHHH
Confidence 54444443
No 319
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.16 E-value=0.65 Score=48.36 Aligned_cols=91 Identities=16% Similarity=0.286 Sum_probs=58.9
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCccc-HHhh-cCCCcEEEEccCChH
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSN-ALEI-LSQYEIVVDATDNAP 172 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~-~~~~-~~~~DvVi~~~D~~~ 172 (444)
+|+|+|+|.+|..+++.|...|. .+.++|.|.-....+ .....+..+....+... ..+. +.++|.||.++++..
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~~~~~~---~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEERLRRL---QDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHH---HhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 69999999999999999999986 678888754322111 11122334433333322 2333 678999999998877
Q ss_pred hHHHHHHHHHHc-CCcEE
Q 013384 173 SRYMISDCCVVL-GKPLV 189 (444)
Q Consensus 173 ~r~~i~~~~~~~-~~p~i 189 (444)
.-..+...++.. +.+.+
T Consensus 78 ~n~~~~~~~r~~~~~~~i 95 (453)
T PRK09496 78 TNMVACQIAKSLFGAPTT 95 (453)
T ss_pred HHHHHHHHHHHhcCCCeE
Confidence 666666666665 44433
No 320
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.15 E-value=0.37 Score=51.06 Aligned_cols=89 Identities=25% Similarity=0.355 Sum_probs=55.7
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCCh
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA 171 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~ 171 (444)
.+++|+|+|+|..|..+++.|...|. ++++.|...-....+ + .-.+.+ +.. ....+.+.++|+||.+..-+
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l-~-~~g~~~--~~~----~~~~~~l~~~D~VV~SpGi~ 81 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPH-A-ERGVAT--VST----SDAVQQIADYALVVTSPGFR 81 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH-H-hCCCEE--EcC----cchHhHhhcCCEEEECCCCC
Confidence 57899999999999999999999996 788888542211111 0 112221 111 11234457789999876544
Q ss_pred HhHHHHHHHHHHcCCcEEE
Q 013384 172 PSRYMISDCCVVLGKPLVS 190 (444)
Q Consensus 172 ~~r~~i~~~~~~~~~p~i~ 190 (444)
... -+-..+++.++|++.
T Consensus 82 ~~~-p~~~~a~~~gi~v~~ 99 (488)
T PRK03369 82 PTA-PVLAAAAAAGVPIWG 99 (488)
T ss_pred CCC-HHHHHHHHCCCcEee
Confidence 332 334456777888875
No 321
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.14 E-value=0.46 Score=46.91 Aligned_cols=98 Identities=19% Similarity=0.200 Sum_probs=57.9
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeec-CCcccHHhh----c--CCCcEE
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREA-LRTSNALEI----L--SQYEIV 164 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~-~~~~~~~~~----~--~~~DvV 164 (444)
..++|+|+|+|.+|-....-+-.+|..++.++|-+....+=..++- .++...... -+.+...+. + ..+|++
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~G--a~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFG--ATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhC--CeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 5789999999999999888888999999999986543221111111 111111111 011111112 2 348999
Q ss_pred EEccCChHhHHHHHHHHHHcCCcEEEEc
Q 013384 165 VDATDNAPSRYMISDCCVVLGKPLVSGA 192 (444)
Q Consensus 165 i~~~D~~~~r~~i~~~~~~~~~p~i~~~ 192 (444)
|+|+.-..+-..--.+.+..|+ ++-++
T Consensus 247 ~dCsG~~~~~~aai~a~r~gGt-~vlvg 273 (354)
T KOG0024|consen 247 FDCSGAEVTIRAAIKATRSGGT-VVLVG 273 (354)
T ss_pred EEccCchHHHHHHHHHhccCCE-EEEec
Confidence 9999876554443445556666 55444
No 322
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.13 E-value=0.26 Score=51.07 Aligned_cols=87 Identities=23% Similarity=0.236 Sum_probs=52.5
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCCh
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA 171 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~ 171 (444)
+.++|+|+|.|+.|..+|+.|...|. +++.+|.+.-....... ...... .+...++.++|+||.+..-.
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~-~V~g~D~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGV-YVIGVDKSLEALQSCPY---------IHERYL-ENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCC-EEEEEeCCccccchhHH---------Hhhhhc-CCcHHHhcCCCEEEECCCCC
Confidence 45689999999999999999999997 68888854322111000 000001 12223446789999776443
Q ss_pred HhHHHHHHHHHHcCCcEEE
Q 013384 172 PSRYMISDCCVVLGKPLVS 190 (444)
Q Consensus 172 ~~r~~i~~~~~~~~~p~i~ 190 (444)
... ..-..+++.|+|+++
T Consensus 71 ~~~-~~l~~A~~~g~~vv~ 88 (418)
T PRK00683 71 KEH-PWVQAAIASHIPVVT 88 (418)
T ss_pred CCc-HHHHHHHHCCCcEEE
Confidence 332 233344566777664
No 323
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.12 E-value=0.83 Score=45.21 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=59.0
Q ss_pred cEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCc-ccHHhhcCCCcEEEEccCCh-
Q 013384 95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRT-SNALEILSQYEIVVDATDNA- 171 (444)
Q Consensus 95 ~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~-~~~~~~~~~~DvVi~~~D~~- 171 (444)
+|+|.|+ |-+|+.++..|...|. +++.++.+.- +...+.+ ..++.+...+.+ +.....++++|+||.+....
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~---~~~~l~~-~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~ 76 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLR---KASFLKE-WGAELVYGDLSLPETLPPSFKGVTAIIDASTSRP 76 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChH---HhhhHhh-cCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCC
Confidence 6999995 6699999999999996 5776655421 1111111 124444445543 44566788999999875321
Q ss_pred -----------HhHHHHHHHHHHcCC-cEEEEccc
Q 013384 172 -----------PSRYMISDCCVVLGK-PLVSGAAL 194 (444)
Q Consensus 172 -----------~~r~~i~~~~~~~~~-p~i~~~~~ 194 (444)
..-..+-++|...++ .+|..+..
T Consensus 77 ~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~ 111 (317)
T CHL00194 77 SDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL 111 (317)
T ss_pred CCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 111345577777776 46666543
No 324
>PRK05875 short chain dehydrogenase; Provisional
Probab=92.08 E-value=0.23 Score=47.83 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=31.0
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~ 40 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRN 40 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 467899999996 7899999999999998 68887754
No 325
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.06 E-value=0.39 Score=50.96 Aligned_cols=76 Identities=11% Similarity=0.145 Sum_probs=48.0
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc--------cc--CcceEEEEeecCC-cccHHhhcCCCc
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--------IN--STVHIIEHREALR-TSNALEILSQYE 162 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R--------ln--p~~~v~~~~~~~~-~~~~~~~~~~~D 162 (444)
.+|.|||+|-.|+.+|..|+++|. .++++|.+.-....+.+ +. +...... ...+. ..+..+.++++|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~g~i~~~~~~~ea~~~aD 82 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPP-EGRLTFCASLAEAVAGAD 82 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhh-hhceEeeCCHHHHhcCCC
Confidence 479999999999999999999997 78999886443333221 00 0000000 00011 123446678999
Q ss_pred EEEEccCCh
Q 013384 163 IVVDATDNA 171 (444)
Q Consensus 163 vVi~~~D~~ 171 (444)
+|+.|+-..
T Consensus 83 ~Vieavpe~ 91 (495)
T PRK07531 83 WIQESVPER 91 (495)
T ss_pred EEEEcCcCC
Confidence 999887654
No 326
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.04 E-value=0.65 Score=46.45 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=46.6
Q ss_pred CcEEEECC-CccHHHHHHHHHHcCCCc------EEEeeCCccccccccc---------ccCcceEEEEeecCCcccHHhh
Q 013384 94 SSILVIGA-GGLGSPALLYLAACGVGR------LGIVDHDVVELNNMHR---------INSTVHIIEHREALRTSNALEI 157 (444)
Q Consensus 94 ~~VlIvG~-GglGs~ia~~La~~Gvg~------i~lvD~D~V~~sNl~R---------lnp~~~v~~~~~~~~~~~~~~~ 157 (444)
.||+|+|+ |.+|+.++..|+..|+-. |.|+|-+.-. +... ..|.... ..+. ....+.
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~--~~~~g~~~Dl~d~~~~~~~~----~~i~-~~~~~~ 73 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAM--KALEGVVMELQDCAFPLLKG----VVIT-TDPEEA 73 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCcc--CccceeeeehhhhcccccCC----cEEe-cChHHH
Confidence 37999999 999999999999988755 9999875421 1111 1122110 0111 234566
Q ss_pred cCCCcEEEEccCCh
Q 013384 158 LSQYEIVVDATDNA 171 (444)
Q Consensus 158 ~~~~DvVi~~~D~~ 171 (444)
++++|+||-+...+
T Consensus 74 ~~~aDiVVitAG~~ 87 (323)
T cd00704 74 FKDVDVAILVGAFP 87 (323)
T ss_pred hCCCCEEEEeCCCC
Confidence 78999999776654
No 327
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.02 E-value=0.28 Score=49.72 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=52.5
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhc-CCCcEEEEccCC
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEIL-SQYEIVVDATDN 170 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~-~~~DvVi~~~D~ 170 (444)
.+.+|+|.|+|++|..++..+...|+.++..+|.+.-...-+..+.-...+......+ .+...++. ..+|+||||+..
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~-~~~i~~~~~~g~d~vid~~G~ 269 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNA-VEQVRELTGGGVDYAFEMAGS 269 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhH-HHHHHHHhCCCCCEEEECCCC
Confidence 3578999999999999988888899988888875332111110111110011000000 01111111 258999999987
Q ss_pred hHhHHHHHHHHHHcCCcEEEE
Q 013384 171 APSRYMISDCCVVLGKPLVSG 191 (444)
Q Consensus 171 ~~~r~~i~~~~~~~~~p~i~~ 191 (444)
..+....-+.....+. ++..
T Consensus 270 ~~~~~~~~~~l~~~G~-iv~~ 289 (371)
T cd08281 270 VPALETAYEITRRGGT-TVTA 289 (371)
T ss_pred hHHHHHHHHHHhcCCE-EEEE
Confidence 6554433334434443 4433
No 328
>PRK09242 tropinone reductase; Provisional
Probab=92.00 E-value=0.36 Score=45.92 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=30.2
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.|++++++|+|+ |++|..+++.|+..|. ++.+++.+
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~ 42 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD 42 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 467889999985 7899999999999997 67777654
No 329
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=92.00 E-value=0.95 Score=45.35 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=47.4
Q ss_pred CcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCccccccccc---ccCcceEEEEeecCCc-ccHHhhcC--CCcEEEE
Q 013384 94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR---INSTVHIIEHREALRT-SNALEILS--QYEIVVD 166 (444)
Q Consensus 94 ~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R---lnp~~~v~~~~~~~~~-~~~~~~~~--~~DvVi~ 166 (444)
++|+|.|+ |.+|+.+++.|...|...+.++|... ...++.+ ..+..++..+...+.+ +....+++ ++|+||.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih 80 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLT-YAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH 80 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCc-cccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence 47999985 67999999999999976677777532 1112211 2223344445445543 33455565 4899998
Q ss_pred ccC
Q 013384 167 ATD 169 (444)
Q Consensus 167 ~~D 169 (444)
+..
T Consensus 81 ~A~ 83 (355)
T PRK10217 81 LAA 83 (355)
T ss_pred CCc
Confidence 863
No 330
>PLN02253 xanthoxin dehydrogenase
Probab=91.99 E-value=0.35 Score=46.72 Aligned_cols=36 Identities=33% Similarity=0.514 Sum_probs=29.5
Q ss_pred hhhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
+|++++|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~ 51 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQ 51 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 46678899998 57799999999999996 67777653
No 331
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=91.98 E-value=0.4 Score=46.33 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=20.5
Q ss_pred CcEEEECCCccHHHHHHHHHHcCC
Q 013384 94 SSILVIGAGGLGSPALLYLAACGV 117 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gv 117 (444)
.||.|||||.+|..++..|..-+.
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~ 26 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAA 26 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCC
Confidence 589999999999999999865433
No 332
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=91.98 E-value=0.34 Score=45.38 Aligned_cols=87 Identities=16% Similarity=0.284 Sum_probs=56.3
Q ss_pred cEEEECCCccHHHHHHHHHHcC---CCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCCh
Q 013384 95 SILVIGAGGLGSPALLYLAACG---VGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA 171 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~G---vg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~ 171 (444)
+|.|||||++|..+++.+ +-| +..+.+.|.|.-...++.+......+ ....+++...|+|+.|.-..
T Consensus 2 ~vgiVGcGaIG~~l~e~v-~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~---------s~ide~~~~~DlvVEaAS~~ 71 (255)
T COG1712 2 KVGIVGCGAIGKFLLELV-RDGRVDFELVAVYDRDEEKAKELEASVGRRCV---------SDIDELIAEVDLVVEAASPE 71 (255)
T ss_pred eEEEEeccHHHHHHHHHH-hcCCcceeEEEEecCCHHHHHHHHhhcCCCcc---------ccHHHHhhccceeeeeCCHH
Confidence 689999999999998876 444 55566667665544443331111111 34556678999999988776
Q ss_pred HhHHHHHHHHHHcCCcEEEEc
Q 013384 172 PSRYMISDCCVVLGKPLVSGA 192 (444)
Q Consensus 172 ~~r~~i~~~~~~~~~p~i~~~ 192 (444)
+.+.+.-++ .+.|+.+|-.+
T Consensus 72 Av~e~~~~~-L~~g~d~iV~S 91 (255)
T COG1712 72 AVREYVPKI-LKAGIDVIVMS 91 (255)
T ss_pred HHHHHhHHH-HhcCCCEEEEe
Confidence 666655544 57777766443
No 333
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=91.90 E-value=0.69 Score=45.34 Aligned_cols=66 Identities=18% Similarity=0.304 Sum_probs=43.9
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCCh
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA 171 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~ 171 (444)
+|.|||+|-+|+.++..|+..|. +++++|.+.-....+.... . ....+..+.++++|+||.|+.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~~g--~--------~~~~~~~~~~~~aDivi~~vp~~ 66 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLAAG--A--------VTAETARQVTEQADVIFTMVPDS 66 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCC--C--------cccCCHHHHHhcCCEEEEecCCH
Confidence 58999999999999999999996 6788876532211111111 0 01123446677899999887654
No 334
>PLN02256 arogenate dehydrogenase
Probab=91.87 E-value=0.36 Score=47.86 Aligned_cols=79 Identities=11% Similarity=0.060 Sum_probs=51.7
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhc-CCCcEEEEcc
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEIL-SQYEIVVDAT 168 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~-~~~DvVi~~~ 168 (444)
+-+..+|.|||+|.+|..+++.|...|. ++.++|.+.. ....+. -.+ .. ..+..+.+ .++|+||-|+
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~--~~~a~~-~gv--~~------~~~~~e~~~~~aDvVilav 100 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY--SDIAAE-LGV--SF------FRDPDDFCEEHPDVVLLCT 100 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH--HHHHHH-cCC--ee------eCCHHHHhhCCCCEEEEec
Confidence 4466789999999999999999999885 7888887641 111110 011 11 12233343 4689999999
Q ss_pred CChHhHHHHHHH
Q 013384 169 DNAPSRYMISDC 180 (444)
Q Consensus 169 D~~~~r~~i~~~ 180 (444)
-.......+.+.
T Consensus 101 p~~~~~~vl~~l 112 (304)
T PLN02256 101 SILSTEAVLRSL 112 (304)
T ss_pred CHHHHHHHHHhh
Confidence 876666666655
No 335
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=91.84 E-value=0.26 Score=48.97 Aligned_cols=77 Identities=22% Similarity=0.296 Sum_probs=46.4
Q ss_pred CcEEEECC-CccHHHHHHHHHHcCCC-cEEEeeCCc-cccccccc--ccCcceEEEEeecCC-cccHHhhcCCCcEEEEc
Q 013384 94 SSILVIGA-GGLGSPALLYLAACGVG-RLGIVDHDV-VELNNMHR--INSTVHIIEHREALR-TSNALEILSQYEIVVDA 167 (444)
Q Consensus 94 ~~VlIvG~-GglGs~ia~~La~~Gvg-~i~lvD~D~-V~~sNl~R--lnp~~~v~~~~~~~~-~~~~~~~~~~~DvVi~~ 167 (444)
.+|.|+|+ |.+|..++..|+..|+. ++.++|.+. ++.-+-.+ ++...........+. ..+ .+-+.++|+||-|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence 37999998 99999999999999974 799999843 12211112 111000000000111 112 2347899999988
Q ss_pred cCCh
Q 013384 168 TDNA 171 (444)
Q Consensus 168 ~D~~ 171 (444)
.+.+
T Consensus 80 ag~p 83 (309)
T cd05294 80 AGVP 83 (309)
T ss_pred cCCC
Confidence 8754
No 336
>PRK08291 ectoine utilization protein EutC; Validated
Probab=91.83 E-value=0.24 Score=49.65 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=49.4
Q ss_pred cCcEEEECCCccHHHHHHHHHH-cCCCcEEEeeCCccccccccc-ccC--cceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 93 KSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHR-INS--TVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~-~Gvg~i~lvD~D~V~~sNl~R-lnp--~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
.++|+|+|+|+.|...+..|.. .|+.++.|++.+.-....+.+ +.. .+++..+ ++..+.+.++|+|+.||
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~------~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVA------RDVHEAVAGADIIVTTT 205 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEe------CCHHHHHccCCEEEEee
Confidence 3689999999999999999885 578999999876443333332 211 2222222 34456678899999888
Q ss_pred CC
Q 013384 169 DN 170 (444)
Q Consensus 169 D~ 170 (444)
-.
T Consensus 206 ~s 207 (330)
T PRK08291 206 PS 207 (330)
T ss_pred CC
Confidence 65
No 337
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.80 E-value=0.35 Score=45.52 Aligned_cols=36 Identities=33% Similarity=0.584 Sum_probs=30.8
Q ss_pred hhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 91 L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
|++++++|.|+ |++|..+++.|+..|. ++.++|.+.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~ 39 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQ 39 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 67889999997 9999999999999997 578877653
No 338
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=91.77 E-value=0.34 Score=45.73 Aligned_cols=34 Identities=32% Similarity=0.333 Sum_probs=29.3
Q ss_pred hhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeC
Q 013384 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (444)
Q Consensus 91 L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~ 125 (444)
|++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r 37 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGR 37 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 67899999996 6799999999999997 6777664
No 339
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=91.75 E-value=0.37 Score=42.53 Aligned_cols=92 Identities=17% Similarity=0.193 Sum_probs=49.7
Q ss_pred cEEEECCCccHHHHHHHHHH-cCCCcEEEeeCCccccccccc----------ccCcceEE-------EEeecCCcc-cHH
Q 013384 95 SILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHR----------INSTVHII-------EHREALRTS-NAL 155 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~-~Gvg~i~lvD~D~V~~sNl~R----------lnp~~~v~-------~~~~~~~~~-~~~ 155 (444)
+|.|+|+|.+|..+++.+.. .++.-+.+.|. .++..+.. ....+..+ .....+..+ +..
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~--~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~ 79 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL--TDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPA 79 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC--CCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChH
Confidence 69999999999999998774 45544555552 33333333 11112111 111111111 111
Q ss_pred hh-c--CCCcEEEEccCChHhHHHHHHHHHHcCCcEE
Q 013384 156 EI-L--SQYEIVVDATDNAPSRYMISDCCVVLGKPLV 189 (444)
Q Consensus 156 ~~-~--~~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i 189 (444)
++ + .+.|+||+||..+.++.....+.. .|.+-|
T Consensus 80 ~~~w~~~gvDiVie~tG~f~~~~~~~~hl~-~GakkV 115 (149)
T smart00846 80 NLPWKELGVDIVVECTGKFTTREKASAHLK-AGAKKV 115 (149)
T ss_pred HCcccccCCeEEEeccccccchHHHHHHHH-cCCCEE
Confidence 11 1 367999999998877765544443 344433
No 340
>PRK07774 short chain dehydrogenase; Provisional
Probab=91.72 E-value=0.36 Score=45.59 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=30.0
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~ 39 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADIN 39 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 356788999996 8899999999999996 67777654
No 341
>PRK06194 hypothetical protein; Provisional
Probab=91.67 E-value=0.37 Score=46.64 Aligned_cols=78 Identities=14% Similarity=0.252 Sum_probs=47.8
Q ss_pred hhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCCccccccc-ccc-cCcceEEEEeecCCcc-cHHhh-------cC
Q 013384 91 LLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNM-HRI-NSTVHIIEHREALRTS-NALEI-------LS 159 (444)
Q Consensus 91 L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl-~Rl-np~~~v~~~~~~~~~~-~~~~~-------~~ 159 (444)
+++++|+|.| .|++|..+++.|+..|. ++.++|.+.-....+ ..+ ....++..+...++.. ....+ +.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5567899998 57899999999999997 688888643211111 111 1133455555555532 22222 23
Q ss_pred CCcEEEEccC
Q 013384 160 QYEIVVDATD 169 (444)
Q Consensus 160 ~~DvVi~~~D 169 (444)
..|+||.+..
T Consensus 83 ~id~vi~~Ag 92 (287)
T PRK06194 83 AVHLLFNNAG 92 (287)
T ss_pred CCCEEEECCC
Confidence 5788887653
No 342
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.50 E-value=0.55 Score=50.58 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=52.4
Q ss_pred cCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHh--hcCCCcEEEEccCC
Q 013384 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALE--ILSQYEIVVDATDN 170 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~--~~~~~DvVi~~~D~ 170 (444)
+.+|+|+|+|.+|..+++.|...|. .+.+||.|.-....+.+ ..+..+..+.++++..+ -++++|.|+.++++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~----~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~ 491 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRE----RGIRAVLGNAANEEIMQLAHLDCARWLLLTIPN 491 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----CCCeEEEcCCCCHHHHHhcCccccCEEEEEcCC
Confidence 5789999999999999999999996 68999998654333322 12344445555443332 24789988777665
Q ss_pred hHh
Q 013384 171 APS 173 (444)
Q Consensus 171 ~~~ 173 (444)
...
T Consensus 492 ~~~ 494 (558)
T PRK10669 492 GYE 494 (558)
T ss_pred hHH
Confidence 443
No 343
>PRK07063 short chain dehydrogenase; Provisional
Probab=91.48 E-value=0.46 Score=45.27 Aligned_cols=36 Identities=31% Similarity=0.424 Sum_probs=30.0
Q ss_pred hhhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
+|++++|+|.| .||+|.++++.|+..|. ++.++|.+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~ 40 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLD 40 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 47788999998 56899999999999997 57777653
No 344
>PRK06141 ornithine cyclodeaminase; Validated
Probab=91.47 E-value=0.3 Score=48.69 Aligned_cols=76 Identities=18% Similarity=0.183 Sum_probs=50.5
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHH-cCCCcEEEeeCCccccccccc-ccC-cceEEEEeecCCcccHHhhcCCCcEEEE
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHR-INS-TVHIIEHREALRTSNALEILSQYEIVVD 166 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~-~Gvg~i~lvD~D~V~~sNl~R-lnp-~~~v~~~~~~~~~~~~~~~~~~~DvVi~ 166 (444)
+...++|+|+|+|+.|...++.+.. .++.++.+++.+.-....+.. +.. ...+.. .++..+.+.++|+|+.
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~------~~~~~~av~~aDIVi~ 195 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEV------VTDLEAAVRQADIISC 195 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEE------eCCHHHHHhcCCEEEE
Confidence 3456899999999999999987765 688999998765322222222 111 111222 1344566789999999
Q ss_pred ccCCh
Q 013384 167 ATDNA 171 (444)
Q Consensus 167 ~~D~~ 171 (444)
||...
T Consensus 196 aT~s~ 200 (314)
T PRK06141 196 ATLST 200 (314)
T ss_pred eeCCC
Confidence 99853
No 345
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=91.46 E-value=0.6 Score=45.87 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=53.2
Q ss_pred cEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCc-ccHHhhcC--CCcEEEEccC-
Q 013384 95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRT-SNALEILS--QYEIVVDATD- 169 (444)
Q Consensus 95 ~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~-~~~~~~~~--~~DvVi~~~D- 169 (444)
+|+|.|+ |-+|+.+++.|...| +++.+|.... .+...+.+ +....+++ ++|+||.|..
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~~~---------------~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~ 64 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDVHST---------------DYCGDFSNPEGVAETVRKIRPDVIVNAAAH 64 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEeccccc---------------cccCCCCCHHHHHHHHHhcCCCEEEECCcc
Confidence 6999996 779999999999888 6777764310 01122332 22334454 5799997642
Q ss_pred --------ChHh--------HHHHHHHHHHcCCcEEEEcccC
Q 013384 170 --------NAPS--------RYMISDCCVVLGKPLVSGAALG 195 (444)
Q Consensus 170 --------~~~~--------r~~i~~~~~~~~~p~i~~~~~g 195 (444)
++.. -..+.++|...++++|+.++..
T Consensus 65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~ 106 (299)
T PRK09987 65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYSTDY 106 (299)
T ss_pred CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEccce
Confidence 2211 1246677888888898877543
No 346
>PRK06125 short chain dehydrogenase; Provisional
Probab=91.37 E-value=0.43 Score=45.51 Aligned_cols=36 Identities=36% Similarity=0.544 Sum_probs=30.8
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
+|++++|+|.|+ ||+|..+++.|+..|. ++.+++.+
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~ 40 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD 40 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 467889999996 6899999999999998 78887754
No 347
>PRK05872 short chain dehydrogenase; Provisional
Probab=91.37 E-value=0.43 Score=46.80 Aligned_cols=37 Identities=32% Similarity=0.494 Sum_probs=31.0
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
.|++++|+|.|+ ||+|..+++.|+..|. ++.+++.+.
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~ 43 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEE 43 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 467889999984 7899999999999997 688877643
No 348
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.36 E-value=0.38 Score=48.48 Aligned_cols=35 Identities=37% Similarity=0.540 Sum_probs=30.2
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+.+|+|.|+|++|..++..+...|+.++..+|.+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~ 210 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDID 210 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 36789999999999999998888999888887654
No 349
>PRK06139 short chain dehydrogenase; Provisional
Probab=91.31 E-value=0.36 Score=48.42 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=31.1
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
.+++++|+|.|+ ||+|.++++.|+..|. ++.+++.+.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~ 41 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDE 41 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 467889999996 7899999999999997 577877654
No 350
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.25 E-value=0.44 Score=44.84 Aligned_cols=37 Identities=27% Similarity=0.353 Sum_probs=30.7
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
++++++|+|+|+ |++|.++++.|+..|.. +.+++.+.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~~ 39 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRNE 39 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCH
Confidence 367889999995 77999999999999975 88877643
No 351
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=91.20 E-value=0.99 Score=48.47 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=48.2
Q ss_pred hhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCccccccccc-c----------cCcceEEEEeecCCc-ccHHhh
Q 013384 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-I----------NSTVHIIEHREALRT-SNALEI 157 (444)
Q Consensus 91 L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-l----------np~~~v~~~~~~~~~-~~~~~~ 157 (444)
-.++.|+|.|+ |++|..+++.|+..|. ++.+++.+.-....+.. + .+..+++.+...+.. +...+.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 34566888885 7899999999999996 56666554322211111 0 011234455555554 334556
Q ss_pred cCCCcEEEEccC
Q 013384 158 LSQYEIVVDATD 169 (444)
Q Consensus 158 ~~~~DvVi~~~D 169 (444)
+.++|+||.+..
T Consensus 157 LggiDiVVn~AG 168 (576)
T PLN03209 157 LGNASVVICCIG 168 (576)
T ss_pred hcCCCEEEEccc
Confidence 789999998864
No 352
>PRK10537 voltage-gated potassium channel; Provisional
Probab=91.19 E-value=0.98 Score=46.45 Aligned_cols=88 Identities=13% Similarity=0.068 Sum_probs=58.7
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHH--hhcCCCcEEEEcc
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNAL--EILSQYEIVVDAT 168 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~--~~~~~~DvVi~~~ 168 (444)
.++.+|+|+|.|.+|..+++.|...|. .+.+||.|.++.. ..... .....+.+.++.. .-+++++.||.++
T Consensus 238 ~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~~----~~~g~--~vI~GD~td~e~L~~AgI~~A~aVI~~t 310 (393)
T PRK10537 238 HRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEHR----LPDDA--DLIPGDSSDSAVLKKAGAARARAILALR 310 (393)
T ss_pred ccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhhh----ccCCC--cEEEeCCCCHHHHHhcCcccCCEEEEcC
Confidence 346789999999999999999998886 7888898854311 11222 2233333332222 1256889999888
Q ss_pred CChHhHHHHHHHHHHcC
Q 013384 169 DNAPSRYMISDCCVVLG 185 (444)
Q Consensus 169 D~~~~r~~i~~~~~~~~ 185 (444)
++.+.-..+-..+++.+
T Consensus 311 ~dD~~Nl~ivL~ar~l~ 327 (393)
T PRK10537 311 DNDADNAFVVLAAKEMS 327 (393)
T ss_pred CChHHHHHHHHHHHHhC
Confidence 88766666666666665
No 353
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.18 E-value=0.75 Score=47.69 Aligned_cols=35 Identities=29% Similarity=0.250 Sum_probs=30.0
Q ss_pred cCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcc
Q 013384 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V 128 (444)
..+|.|||+|-+|.++|..|+..|. +++.+|.|.-
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQH 37 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHH
Confidence 3679999999999999999999994 6888886544
No 354
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=91.16 E-value=1.2 Score=44.44 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=47.7
Q ss_pred hhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCccc--ccccccc----c-CcceEEEEeecCCcc-cHHhhcC--
Q 013384 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVE--LNNMHRI----N-STVHIIEHREALRTS-NALEILS-- 159 (444)
Q Consensus 91 L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~--~sNl~Rl----n-p~~~v~~~~~~~~~~-~~~~~~~-- 159 (444)
+++++|+|.|+ |.+|+++++.|+..|. ++.++|.+.-. ...+..+ + ....+..+...+.+. ...+.+.
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 82 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGY-EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI 82 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence 45788999995 7899999999999997 56666654321 1112111 1 112355555566542 3344454
Q ss_pred CCcEEEEccC
Q 013384 160 QYEIVVDATD 169 (444)
Q Consensus 160 ~~DvVi~~~D 169 (444)
..|+||.+.-
T Consensus 83 ~~d~Vih~A~ 92 (340)
T PLN02653 83 KPDEVYNLAA 92 (340)
T ss_pred CCCEEEECCc
Confidence 3699997753
No 355
>PRK05866 short chain dehydrogenase; Provisional
Probab=91.16 E-value=0.34 Score=47.53 Aligned_cols=36 Identities=31% Similarity=0.415 Sum_probs=29.8
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+++++|+|.|+ ||+|..+++.|+..|. ++.+++.+
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~ 73 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARR 73 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 356788999995 8899999999999996 67777754
No 356
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.15 E-value=0.23 Score=49.26 Aligned_cols=71 Identities=21% Similarity=0.325 Sum_probs=45.3
Q ss_pred cEEEECCCccHHHHHHHHHHcCC-CcEEEeeCCcccc----ccccc---ccCcceEEEEeecCCcccHHhhcCCCcEEEE
Q 013384 95 SILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVEL----NNMHR---INSTVHIIEHREALRTSNALEILSQYEIVVD 166 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gv-g~i~lvD~D~V~~----sNl~R---lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~ 166 (444)
||.|||+|.+|+.+|..|+..|+ ++|.|+|-+.=-. -+|.- +.+...+..+.. ..+-++++|+||-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~------~y~~~~~aDivvi 74 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAG------DYDDCADADIIVI 74 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEEC------CHHHhCCCCEEEE
Confidence 68999999999999999999998 6899999631100 01111 222112222211 1455689999997
Q ss_pred ccCCh
Q 013384 167 ATDNA 171 (444)
Q Consensus 167 ~~D~~ 171 (444)
+...+
T Consensus 75 taG~~ 79 (307)
T cd05290 75 TAGPS 79 (307)
T ss_pred CCCCC
Confidence 76643
No 357
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=91.15 E-value=0.46 Score=45.14 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=30.3
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.|++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 467899999995 8899999999999997 67777654
No 358
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.15 E-value=0.19 Score=52.81 Aligned_cols=89 Identities=19% Similarity=0.175 Sum_probs=50.7
Q ss_pred hhcCcEEEECCCccHHH-HHHHHHHcCCCcEEEeeCCccccccccccc-CcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 91 LLKSSILVIGAGGLGSP-ALLYLAACGVGRLGIVDHDVVELNNMHRIN-STVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~-ia~~La~~Gvg~i~lvD~D~V~~sNl~Rln-p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
.++++|+|+|+|+.|.. +|+.|...|. .+++.|.+..+. ...+. -.+.+ +.. . ..+.+.++|+||-..
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~~~~--~~~l~~~gi~~--~~~----~-~~~~~~~~d~vv~sp 74 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKESAV--TQRLLELGAII--FIG----H-DAENIKDADVVVYSS 74 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCCChH--HHHHHHCCCEE--eCC----C-CHHHCCCCCEEEECC
Confidence 35578999999999999 7999999997 477888654321 11111 12222 211 1 123446799998654
Q ss_pred CChHhHHHHHHHHHHcCCcEEE
Q 013384 169 DNAPSRYMISDCCVVLGKPLVS 190 (444)
Q Consensus 169 D~~~~r~~i~~~~~~~~~p~i~ 190 (444)
.=+.... .-..+++.++|+++
T Consensus 75 gi~~~~~-~~~~a~~~~i~i~~ 95 (461)
T PRK00421 75 AIPDDNP-ELVAARELGIPVVR 95 (461)
T ss_pred CCCCCCH-HHHHHHHCCCcEEe
Confidence 3222211 22234455555553
No 359
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.13 E-value=0.7 Score=48.10 Aligned_cols=91 Identities=18% Similarity=0.219 Sum_probs=54.7
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCC
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDN 170 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~ 170 (444)
+.+++|+|+|.|+.|-.++..|...|. +++..|.+.-... ..++...+.+. .. ......+.++|+||....-
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~~~~~~-~~~l~~g~~~~--~~----~~~~~~~~~~d~vv~spgi 75 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTRITPPG-LDKLPENVERH--TG----SLNDEWLLAADLIVASPGI 75 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCCCchh-HHHHhcCCEEE--eC----CCCHHHhcCCCEEEECCCC
Confidence 457789999999999999999999997 7888886542210 01121122221 11 1112345678998865543
Q ss_pred hHhHHHHHHHHHHcCCcEEE
Q 013384 171 APSRYMISDCCVVLGKPLVS 190 (444)
Q Consensus 171 ~~~r~~i~~~~~~~~~p~i~ 190 (444)
+... ..-..+++.++|+++
T Consensus 76 ~~~~-~~~~~a~~~g~~v~~ 94 (438)
T PRK03806 76 ALAH-PSLSAAADAGIEIVG 94 (438)
T ss_pred CCCC-HHHHHHHHCCCeEEE
Confidence 3222 223345677777665
No 360
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=91.12 E-value=0.88 Score=45.91 Aligned_cols=99 Identities=14% Similarity=0.133 Sum_probs=55.0
Q ss_pred CcEEEECC-CccHHHHHHHHHHcCCCcE-EEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCCh
Q 013384 94 SSILVIGA-GGLGSPALLYLAACGVGRL-GIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA 171 (444)
Q Consensus 94 ~~VlIvG~-GglGs~ia~~La~~Gvg~i-~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~ 171 (444)
.+|+|+|+ |.+|.+++..|....--++ .++|... ...-+....+..... ....+..-... .+.+.|+|+.|+.+.
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~-~g~~l~~~~~~~~~~-~~~~~~~~~~~-~~~~vD~Vf~alP~~ 79 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSS-AGKPLSDVHPHLRGL-VDLVLEPLDPE-ILAGADVVFLALPHG 79 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccc-cCcchHHhCcccccc-cCceeecCCHH-HhcCCCEEEECCCcH
Confidence 58999998 6689999999987643344 4555221 111111111211100 00011111111 346799999999886
Q ss_pred HhHHHHHHHHHHcCCcEEEEc-ccCC
Q 013384 172 PSRYMISDCCVVLGKPLVSGA-ALGL 196 (444)
Q Consensus 172 ~~r~~i~~~~~~~~~p~i~~~-~~g~ 196 (444)
.....+ ..+.+.|+++|+.+ .+.+
T Consensus 80 ~~~~~v-~~a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 80 VSMDLA-PQLLEAGVKVIDLSADFRL 104 (343)
T ss_pred HHHHHH-HHHHhCCCEEEECCcccCC
Confidence 554444 44566899999865 3444
No 361
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=91.05 E-value=1.2 Score=45.60 Aligned_cols=100 Identities=16% Similarity=0.146 Sum_probs=58.0
Q ss_pred hcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCcccccc------cccccCcceEEEEeecCCc-ccHHhhcC----
Q 013384 92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNN------MHRINSTVHIIEHREALRT-SNALEILS---- 159 (444)
Q Consensus 92 ~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sN------l~Rlnp~~~v~~~~~~~~~-~~~~~~~~---- 159 (444)
++.+|+|+|+ |.+|+.+++.|...|. ++.+++.+.-.... +....+. ++.+...++. +.....++
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~~~--v~~v~~Dl~d~~~l~~~~~~~~~ 135 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSGIRGKNGKEDTKKELPG--AEVVFGDVTDADSLRKVLFSEGD 135 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhhccccchhhHHhhhcCC--ceEEEeeCCCHHHHHHHHHHhCC
Confidence 4568999995 7799999999999986 57766654321110 0001233 3344444543 33444454
Q ss_pred CCcEEEEccCCh------------HhHHHHHHHHHHcCCc-EEEEccc
Q 013384 160 QYEIVVDATDNA------------PSRYMISDCCVVLGKP-LVSGAAL 194 (444)
Q Consensus 160 ~~DvVi~~~D~~------------~~r~~i~~~~~~~~~p-~i~~~~~ 194 (444)
++|+||.|.... ..-..+-++|++.++. +|..+..
T Consensus 136 ~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~ 183 (390)
T PLN02657 136 PVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAI 183 (390)
T ss_pred CCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 589999876321 1112344667777654 6665544
No 362
>PLN00016 RNA-binding protein; Provisional
Probab=91.05 E-value=1.1 Score=45.70 Aligned_cols=106 Identities=12% Similarity=0.162 Sum_probs=63.5
Q ss_pred HHhhhcCcEEEE----CC-CccHHHHHHHHHHcCCCcEEEeeCCcccccccc-----c---c-cCcceEEEEeecCCccc
Q 013384 88 QSNLLKSSILVI----GA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMH-----R---I-NSTVHIIEHREALRTSN 153 (444)
Q Consensus 88 q~~L~~~~VlIv----G~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~-----R---l-np~~~v~~~~~~~~~~~ 153 (444)
-.....++|+|+ |+ |-+|+.+++.|...|. ++++++.+.-....+. + + ... ++.+...+..
T Consensus 47 ~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~--v~~v~~D~~d-- 121 (378)
T PLN00016 47 AAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKKEPFSRFSELSSAG--VKTVWGDPAD-- 121 (378)
T ss_pred hcccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhccCchhhhhHhhhcC--ceEEEecHHH--
Confidence 345666889999 75 6699999999999995 6777776542211110 0 0 111 3333333322
Q ss_pred HHhhc--CCCcEEEEccCC-hHhHHHHHHHHHHcCC-cEEEEcccCCcc
Q 013384 154 ALEIL--SQYEIVVDATDN-APSRYMISDCCVVLGK-PLVSGAALGLEG 198 (444)
Q Consensus 154 ~~~~~--~~~DvVi~~~D~-~~~r~~i~~~~~~~~~-p~i~~~~~g~~G 198 (444)
..+++ .++|+||++... ...-..+-++|.+.++ .+|..+..+.+|
T Consensus 122 ~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg 170 (378)
T PLN00016 122 VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGVYK 170 (378)
T ss_pred HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhhcC
Confidence 23333 468999988643 2333345667877776 588777655444
No 363
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=91.04 E-value=0.78 Score=44.90 Aligned_cols=93 Identities=13% Similarity=0.160 Sum_probs=51.9
Q ss_pred cCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChH
Q 013384 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAP 172 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~ 172 (444)
..+|+|+|+|.+|..++..|.+.|... .+++.|.-..+ +.+ + ......+ ....+........+|+||.|+--..
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v-~i~g~d~~~~~-~~~-a--~~lgv~d-~~~~~~~~~~~~~aD~VivavPi~~ 76 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVV-RIIGRDRSAAT-LKA-A--LELGVID-ELTVAGLAEAAAEADLVIVAVPIEA 76 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeE-EEEeecCcHHH-HHH-H--hhcCccc-ccccchhhhhcccCCEEEEeccHHH
Confidence 468999999999999999999999744 23333222111 000 0 0000000 0011111344567899998887767
Q ss_pred hHHHHHHHHH--HcCCcEEEE
Q 013384 173 SRYMISDCCV--VLGKPLVSG 191 (444)
Q Consensus 173 ~r~~i~~~~~--~~~~p~i~~ 191 (444)
+...|.+++- +.+..+.+.
T Consensus 77 ~~~~l~~l~~~l~~g~iv~Dv 97 (279)
T COG0287 77 TEEVLKELAPHLKKGAIVTDV 97 (279)
T ss_pred HHHHHHHhcccCCCCCEEEec
Confidence 7666666653 334444443
No 364
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=90.98 E-value=0.47 Score=45.74 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=30.4
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~ 43 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRN 43 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467888999985 7899999999999998 67777654
No 365
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=90.96 E-value=1.5 Score=42.57 Aligned_cols=93 Identities=24% Similarity=0.284 Sum_probs=55.9
Q ss_pred cEEEECCCc-cHHHHHHHHHHcCCCcEEEeeC----CcccccccccccCcceEEEEeecCCcccHHhhcCC-Cc-EEEEc
Q 013384 95 SILVIGAGG-LGSPALLYLAACGVGRLGIVDH----DVVELNNMHRINSTVHIIEHREALRTSNALEILSQ-YE-IVVDA 167 (444)
Q Consensus 95 ~VlIvG~Gg-lGs~ia~~La~~Gvg~i~lvD~----D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~-~D-vVi~~ 167 (444)
+|+|.|+.| .|.++++.+... .+.||+. ... ..|+.-+... .+..+...-......+++.. +| +|||-
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~---~~~Lv~~~~~~~~~-~~~~~~~~g~-~v~v~~~~~~~~~l~~~~~~~~d~VvIDF 76 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAA---GLEIVPTSFGGEEE-AENEAEVAGK-EILLHGPSEREARIGEVFAKYPELICIDY 76 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcC---CCEEEeeEcccccc-ccchhhhccc-ceeeeccccccccHHHHHhhcCCEEEEEC
Confidence 799999766 899999997764 4566653 111 1122222221 22221111112344555555 89 88887
Q ss_pred cCChHhHHHHHHHHHHcCCcEEEEcc
Q 013384 168 TDNAPSRYMISDCCVVLGKPLVSGAA 193 (444)
Q Consensus 168 ~D~~~~r~~i~~~~~~~~~p~i~~~~ 193 (444)
| .|..-+..-++|..+++|+|.+.+
T Consensus 77 T-~P~~~~~n~~~~~~~gv~~ViGTT 101 (275)
T TIGR02130 77 T-HPSAVNDNAAFYGKHGIPFVMGTT 101 (275)
T ss_pred C-ChHHHHHHHHHHHHCCCCEEEcCC
Confidence 7 556666778899999999997643
No 366
>PRK07340 ornithine cyclodeaminase; Validated
Probab=90.96 E-value=0.26 Score=48.92 Aligned_cols=75 Identities=19% Similarity=0.157 Sum_probs=51.0
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHH-cCCCcEEEeeCCccccccccc-ccC-cceEEEEeecCCcccHHhhcCCCcEEEE
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHDVVELNNMHR-INS-TVHIIEHREALRTSNALEILSQYEIVVD 166 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~-~Gvg~i~lvD~D~V~~sNl~R-lnp-~~~v~~~~~~~~~~~~~~~~~~~DvVi~ 166 (444)
+...++|+|+|+|+.|...++.+.. .++.++.++|.+.-....+.. +.. .+.+. .++..+.+.++|+|+.
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~-------~~~~~~av~~aDiVit 194 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE-------PLDGEAIPEAVDLVVT 194 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE-------ECCHHHHhhcCCEEEE
Confidence 3456889999999999999999975 688899999876432222211 211 11111 1345567789999999
Q ss_pred ccCCh
Q 013384 167 ATDNA 171 (444)
Q Consensus 167 ~~D~~ 171 (444)
||-+.
T Consensus 195 aT~s~ 199 (304)
T PRK07340 195 ATTSR 199 (304)
T ss_pred ccCCC
Confidence 98764
No 367
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.95 E-value=0.6 Score=48.65 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=54.1
Q ss_pred hhhc-CcEEEECCCccHHHHHHHHHHcCC-CcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 90 NLLK-SSILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 90 ~L~~-~~VlIvG~GglGs~ia~~La~~Gv-g~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
++++ ++|+|+|+|+.|...+..|...|- -.+++.|...... ...++.. .+..+..... .+.+.++|+||-.
T Consensus 3 ~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~-~~~~l~~--g~~~~~g~~~----~~~~~~~d~vV~S 75 (438)
T PRK04663 3 RWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPP-GQEQLPE--DVELHSGGWN----LEWLLEADLVVTN 75 (438)
T ss_pred cccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCch-hHHHhhc--CCEEEeCCCC----hHHhccCCEEEEC
Confidence 4555 789999999999999999999865 4788888643211 0011211 2222222111 2334679999866
Q ss_pred cCChHhHHHHHHHHHHcCCcEEE
Q 013384 168 TDNAPSRYMISDCCVVLGKPLVS 190 (444)
Q Consensus 168 ~D~~~~r~~i~~~~~~~~~p~i~ 190 (444)
..=++.- ..-..+++.++|+++
T Consensus 76 pgI~~~~-p~~~~a~~~gi~i~~ 97 (438)
T PRK04663 76 PGIALAT-PEIQQVLAAGIPVVG 97 (438)
T ss_pred CCCCCCC-HHHHHHHHCCCcEEE
Confidence 5432222 223345667777764
No 368
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=90.91 E-value=0.52 Score=44.84 Aligned_cols=37 Identities=32% Similarity=0.477 Sum_probs=30.4
Q ss_pred HhhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 89 ~~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus 4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~ 41 (260)
T PRK12823 4 QRFAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRS 41 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCc
Confidence 3577889999985 7799999999999996 67777654
No 369
>PLN02740 Alcohol dehydrogenase-like
Probab=90.84 E-value=0.58 Score=47.65 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=30.5
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+.+|+|+|+|++|..++..+...|+.++..+|.+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~ 232 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDIN 232 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCC
Confidence 36789999999999999999999999888888764
No 370
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.84 E-value=0.56 Score=44.89 Aligned_cols=36 Identities=33% Similarity=0.447 Sum_probs=30.5
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+++++|+|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDID 39 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467889999995 8899999999999997 77777654
No 371
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=90.80 E-value=0.44 Score=44.78 Aligned_cols=36 Identities=36% Similarity=0.418 Sum_probs=29.9
Q ss_pred hhhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+++++|+|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35678999999 67899999999999997 67777654
No 372
>PRK06138 short chain dehydrogenase; Provisional
Probab=90.77 E-value=0.51 Score=44.49 Aligned_cols=35 Identities=31% Similarity=0.496 Sum_probs=28.8
Q ss_pred hhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 91 L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
|++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~ 38 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRD 38 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCC
Confidence 67889999985 7799999999999985 56776543
No 373
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.77 E-value=0.69 Score=44.33 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=29.1
Q ss_pred hhhcCcEEEECC---CccHHHHHHHHHHcCCCcEEEeeC
Q 013384 90 NLLKSSILVIGA---GGLGSPALLYLAACGVGRLGIVDH 125 (444)
Q Consensus 90 ~L~~~~VlIvG~---GglGs~ia~~La~~Gvg~i~lvD~ 125 (444)
.++++.++|.|+ +|+|.++++.|++.|. ++.+++.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r 41 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYA 41 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecC
Confidence 367789999997 5999999999999997 5666653
No 374
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.72 E-value=0.46 Score=47.51 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=29.4
Q ss_pred cCcEEEECC-CccHHHHHHHHHHcCC-C-----cEEEeeC
Q 013384 93 KSSILVIGA-GGLGSPALLYLAACGV-G-----RLGIVDH 125 (444)
Q Consensus 93 ~~~VlIvG~-GglGs~ia~~La~~Gv-g-----~i~lvD~ 125 (444)
-.||.|+|+ |.+|+.+|..|+..|+ + +|.|+|-
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 358999999 9999999999999887 4 6999986
No 375
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=90.70 E-value=1.4 Score=43.26 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=28.7
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcc
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V 128 (444)
.+|.+||+|..|.++|.+|..+|. .+++.|.+.-
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~ 34 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPE 34 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChh
Confidence 479999999999999999999994 6777776543
No 376
>PLN02214 cinnamoyl-CoA reductase
Probab=90.66 E-value=1.4 Score=44.18 Aligned_cols=102 Identities=12% Similarity=0.111 Sum_probs=59.8
Q ss_pred hhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCcccccc--cccccC-cceEEEEeecCCc-ccHHhhcCCCcEEE
Q 013384 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNN--MHRINS-TVHIIEHREALRT-SNALEILSQYEIVV 165 (444)
Q Consensus 91 L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sN--l~Rlnp-~~~v~~~~~~~~~-~~~~~~~~~~DvVi 165 (444)
+++++|+|.|+ |.+|+.+++.|+..|. +++.++.+.-...+ +..+.. .-+++.+...+.. +...+.++++|+||
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGY-TVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 56788999997 7799999999999996 45555443211110 011111 1124444445543 34456678899999
Q ss_pred EccCC----hH--------hHHHHHHHHHHcCC-cEEEEcc
Q 013384 166 DATDN----AP--------SRYMISDCCVVLGK-PLVSGAA 193 (444)
Q Consensus 166 ~~~D~----~~--------~r~~i~~~~~~~~~-p~i~~~~ 193 (444)
.+.-. +. .-..+-++|.+.++ .+|..+.
T Consensus 87 h~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS 127 (342)
T PLN02214 87 HTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS 127 (342)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 87632 11 12345556777665 4666554
No 377
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=90.66 E-value=0.25 Score=52.80 Aligned_cols=35 Identities=31% Similarity=0.419 Sum_probs=31.9
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
+++++|+|+|+||+|..++..|+..|+ ++.+++.+
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~ 411 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRT 411 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 667899999999999999999999999 89998764
No 378
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.63 E-value=0.38 Score=45.14 Aligned_cols=37 Identities=27% Similarity=0.499 Sum_probs=30.9
Q ss_pred hhhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 90 ~L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
.+++++|+|.| .|++|..+++.|+..|. ++.+++.+.
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~ 41 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTE 41 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 35678899998 66799999999999998 788887653
No 379
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.59 E-value=0.4 Score=50.30 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=31.2
Q ss_pred hhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.|++++|+|+|+|+.|-.+|..|...|. .+.+.|..
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~-~v~~~D~~ 41 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGA-EVIAWDDN 41 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEECCC
Confidence 3667899999999999999999999997 68888843
No 380
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=90.59 E-value=0.6 Score=41.77 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=49.9
Q ss_pred hhhcCcEEEECCCc-cHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 90 NLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 90 ~L~~~~VlIvG~Gg-lGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
.|++++|+|||-+. +|.+++..|.+.|. .+++.+ ....+..++.+.+|+||.++
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~a-tVt~~h------------------------~~T~~l~~~~~~ADIVVsa~ 87 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGA-TVTICH------------------------SKTKNLQEITRRADIVVSAV 87 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT--EEEEE-------------------------TTSSSHHHHHTTSSEEEE-S
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCC-eEEecc------------------------CCCCcccceeeeccEEeeee
Confidence 58999999999886 89999999998864 233322 12256778889999999998
Q ss_pred CChHhHHHHHHHHHHcCCcEEEEcccCC
Q 013384 169 DNAPSRYMISDCCVVLGKPLVSGAALGL 196 (444)
Q Consensus 169 D~~~~r~~i~~~~~~~~~p~i~~~~~g~ 196 (444)
..+.. |...-.+-+..+|+.+....
T Consensus 88 G~~~~---i~~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 88 GKPNL---IKADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp SSTT----B-GGGS-TTEEEEE--CEEE
T ss_pred ccccc---cccccccCCcEEEecCCccc
Confidence 77543 22223455667888775544
No 381
>PLN02240 UDP-glucose 4-epimerase
Probab=90.58 E-value=1.1 Score=44.73 Aligned_cols=78 Identities=22% Similarity=0.411 Sum_probs=46.8
Q ss_pred hhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCcc-ccccccc---c-cC-cceEEEEeecCCc-ccHHhhcC--C
Q 013384 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVV-ELNNMHR---I-NS-TVHIIEHREALRT-SNALEILS--Q 160 (444)
Q Consensus 91 L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V-~~sNl~R---l-np-~~~v~~~~~~~~~-~~~~~~~~--~ 160 (444)
|++++|+|.|+ |.+|+.+++.|+..|. +++++|...- ...+..+ . .. ...++.+...+.. +....++. .
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~ 81 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR 81 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence 56789999985 7899999999999995 6888773210 0011111 1 10 1234444444543 23334443 6
Q ss_pred CcEEEEccC
Q 013384 161 YEIVVDATD 169 (444)
Q Consensus 161 ~DvVi~~~D 169 (444)
+|+||.+.-
T Consensus 82 ~d~vih~a~ 90 (352)
T PLN02240 82 FDAVIHFAG 90 (352)
T ss_pred CCEEEEccc
Confidence 899998863
No 382
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=90.57 E-value=1.4 Score=35.51 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=53.3
Q ss_pred hcCcEEEECCCccHHHHHHH-HHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCC
Q 013384 92 LKSSILVIGAGGLGSPALLY-LAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDN 170 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~-La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~ 170 (444)
+..+|+|+|+|++|..++.. ....|.+-..++|.|.= .+.+.-. .+..+. ..+.+.+.. +.|+.|-|+..
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~---~~G~~i~--gipV~~---~~~~l~~~~-~i~iaii~VP~ 72 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPE---KIGKEIG--GIPVYG---SMDELEEFI-EIDIAIITVPA 72 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTT---TTTSEET--TEEEES---SHHHHHHHC-TTSEEEEES-H
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCC---ccCcEEC--CEEeec---cHHHhhhhh-CCCEEEEEcCH
Confidence 45689999999999988743 45678888888885433 2222111 122221 223444445 49999989966
Q ss_pred hHhHHHHHHHHHHcCCcEEE
Q 013384 171 APSRYMISDCCVVLGKPLVS 190 (444)
Q Consensus 171 ~~~r~~i~~~~~~~~~p~i~ 190 (444)
...+....++ ...++..|.
T Consensus 73 ~~a~~~~~~~-~~~gIk~i~ 91 (96)
T PF02629_consen 73 EAAQEVADEL-VEAGIKGIV 91 (96)
T ss_dssp HHHHHHHHHH-HHTT-SEEE
T ss_pred HHHHHHHHHH-HHcCCCEEE
Confidence 5566555544 457776554
No 383
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=90.57 E-value=0.31 Score=49.36 Aligned_cols=43 Identities=26% Similarity=0.434 Sum_probs=37.7
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR 135 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R 135 (444)
...+|+|||.|-+|..+|.+|++.|. +++++|.+.+...+-.|
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s~~ 45 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAAGR 45 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcchhc
Confidence 45789999999999999999999999 99999998887655555
No 384
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=90.56 E-value=1.4 Score=42.52 Aligned_cols=93 Identities=24% Similarity=0.221 Sum_probs=60.7
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcC--CCcEEEEccCChH
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILS--QYEIVVDATDNAP 172 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~--~~DvVi~~~D~~~ 172 (444)
+|+|+|.-+-|..++..|...|..-+..+=.+.=. .- +.+.-....+...++.+...+++. +.|+|||++-.++
T Consensus 2 ~ILvlGGT~egr~la~~L~~~g~~v~~s~~t~~~~-~~---~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA 77 (256)
T TIGR00715 2 TVLLMGGTVDSRAIAKGLIAQGIEILVTVTTSEGK-HL---YPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPFA 77 (256)
T ss_pred eEEEEechHHHHHHHHHHHhCCCeEEEEEccCCcc-cc---ccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHH
Confidence 79999997779999999999986444333221100 00 111101223334455555556664 5899999999986
Q ss_pred h--HHHHHHHHHHcCCcEEEE
Q 013384 173 S--RYMISDCCVVLGKPLVSG 191 (444)
Q Consensus 173 ~--r~~i~~~~~~~~~p~i~~ 191 (444)
. ...+.++|...++|++-.
T Consensus 78 ~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 78 AQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHHHHHHHhCCcEEEE
Confidence 5 457888999999999853
No 385
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.55 E-value=0.72 Score=45.15 Aligned_cols=79 Identities=15% Similarity=0.150 Sum_probs=58.0
Q ss_pred HhhhcCcEEEECCCc-cHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 89 SNLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 89 ~~L~~~~VlIvG~Gg-lGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
..|.+++|+|||-+. +|.+++..|...|. .+++++. ...+..+..+++|+||.|
T Consensus 160 i~l~Gk~vvViGrs~iVGkPla~lL~~~~a-tVtv~hs------------------------~T~~l~~~~~~ADIvv~A 214 (287)
T PRK14176 160 VDIEGKNAVIVGHSNVVGKPMAAMLLNRNA-TVSVCHV------------------------FTDDLKKYTLDADILVVA 214 (287)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCC-EEEEEec------------------------cCCCHHHHHhhCCEEEEc
Confidence 468999999999998 89999999998774 5555431 123566778899999999
Q ss_pred cCChHhHHHHHHHHHHcCCcEEEEcccC
Q 013384 168 TDNAPSRYMISDCCVVLGKPLVSGAALG 195 (444)
Q Consensus 168 ~D~~~~r~~i~~~~~~~~~p~i~~~~~g 195 (444)
+..+.. +..--.+.+.-+|++|...
T Consensus 215 vG~p~~---i~~~~vk~gavVIDvGin~ 239 (287)
T PRK14176 215 TGVKHL---IKADMVKEGAVIFDVGITK 239 (287)
T ss_pred cCCccc---cCHHHcCCCcEEEEecccc
Confidence 887642 3333455677788887653
No 386
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.53 E-value=0.3 Score=44.53 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=28.8
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccc
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVEL 130 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~ 130 (444)
+|.|||+|..|..+|..++++|. +++++|.+.-..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l 35 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEAL 35 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHH
Confidence 68999999999999999999995 899999865543
No 387
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=90.52 E-value=1.1 Score=40.69 Aligned_cols=87 Identities=16% Similarity=0.198 Sum_probs=54.1
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHhH
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPSR 174 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~r 174 (444)
+|+|+|+|+.|..++..|-+.|..-+.++|.+.-.... ++ ....+.. ..+....+....+.++-++.....+
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~~~~~~~--~i-~g~pvlg-----~~~~l~~~~~~~~~~iiai~~~~~~ 72 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDNPALQGT--SV-DGLPVLG-----GDEDLLRYPPDEVDLVVAIGDNKLR 72 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCCccccCc--cc-CCccEEC-----CHHHHhhhcccccEEEEEcCCHHHH
Confidence 58999999999999999999999889999987432111 01 1111110 1112222333456666677666777
Q ss_pred HHHHHHHHHcCCcEE
Q 013384 175 YMISDCCVVLGKPLV 189 (444)
Q Consensus 175 ~~i~~~~~~~~~p~i 189 (444)
..+.+.+...+.++.
T Consensus 73 ~~i~~~l~~~g~~~~ 87 (201)
T TIGR03570 73 RRLFEKLKAKGYRFA 87 (201)
T ss_pred HHHHHHHHhCCCcce
Confidence 777777777665443
No 388
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=90.45 E-value=0.77 Score=38.39 Aligned_cols=83 Identities=18% Similarity=0.272 Sum_probs=47.7
Q ss_pred CCCccHHHHHHHHHHc----CCCcEEEeeCC-cccccccccccCcceEEEEeecCCcccHHhhcC--CCcEEEEccCChH
Q 013384 100 GAGGLGSPALLYLAAC----GVGRLGIVDHD-VVELNNMHRINSTVHIIEHREALRTSNALEILS--QYEIVVDATDNAP 172 (444)
Q Consensus 100 G~GglGs~ia~~La~~----Gvg~i~lvD~D-~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~--~~DvVi~~~D~~~ 172 (444)
|+|.+|+.+++.|... ++.-..|.|.+ .+... .....+. .....+..+++. ..|+||+|+....
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~dvvVE~t~~~~ 71 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKD-WAASFPD--------EAFTTDLEELIDDPDIDVVVECTSSEA 71 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETT-HHHHHTH--------SCEESSHHHHHTHTT-SEEEE-SSCHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhh-hhhhccc--------ccccCCHHHHhcCcCCCEEEECCCchH
Confidence 8999999999999876 45556666655 11111 0000000 011134456666 8999999987765
Q ss_pred hHHHHHHHHHHcCCcEEEEc
Q 013384 173 SRYMISDCCVVLGKPLVSGA 192 (444)
Q Consensus 173 ~r~~i~~~~~~~~~p~i~~~ 192 (444)
...+ -..+.++|+.+|.++
T Consensus 72 ~~~~-~~~~L~~G~~VVt~n 90 (117)
T PF03447_consen 72 VAEY-YEKALERGKHVVTAN 90 (117)
T ss_dssp HHHH-HHHHHHTTCEEEES-
T ss_pred HHHH-HHHHHHCCCeEEEEC
Confidence 5544 445678999999865
No 389
>PRK08251 short chain dehydrogenase; Provisional
Probab=90.44 E-value=0.63 Score=43.86 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=28.3
Q ss_pred cCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 93 KSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 93 ~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
+++|+|.| .||+|..+++.|+..|. ++.+++.+.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~ 36 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT 36 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH
Confidence 46789998 77899999999999995 788877654
No 390
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.43 E-value=0.72 Score=45.36 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=53.6
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCC
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDN 170 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~ 170 (444)
...++|.|+|-|-+|.+.|+..+.+|. +++|+|.+.-..++|.-++ ........-++.+..+.+..+|+||.++--
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f---~~rv~~~~st~~~iee~v~~aDlvIgaVLI 241 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLF---GGRVHTLYSTPSNIEEAVKKADLVIGAVLI 241 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhh---CceeEEEEcCHHHHHHHhhhccEEEEEEEe
Confidence 678899999999999999999888884 8888886433322222211 112222334556788888999999988754
Q ss_pred h
Q 013384 171 A 171 (444)
Q Consensus 171 ~ 171 (444)
+
T Consensus 242 p 242 (371)
T COG0686 242 P 242 (371)
T ss_pred c
Confidence 4
No 391
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.43 E-value=0.31 Score=48.35 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=46.2
Q ss_pred cEEEECCCccHHHHHHHHHHcCC-CcEEEeeCCccccc----cccc---ccCcceEEEEeecCCcccHHhhcCCCcEEEE
Q 013384 95 SILVIGAGGLGSPALLYLAACGV-GRLGIVDHDVVELN----NMHR---INSTVHIIEHREALRTSNALEILSQYEIVVD 166 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gv-g~i~lvD~D~V~~s----Nl~R---lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~ 166 (444)
+|.|||+|.+|+.+|..|+..|+ .++.++|.+.-... ++.- .++...+ + ... .+-++++|+||.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i--~-----~~d-~~~l~~aDiVii 73 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRI--Y-----AGD-YADCKGADVVVI 73 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEE--e-----eCC-HHHhCCCCEEEE
Confidence 69999999999999999999996 68999997642221 1111 1122111 1 112 234689999998
Q ss_pred ccCCh
Q 013384 167 ATDNA 171 (444)
Q Consensus 167 ~~D~~ 171 (444)
|...+
T Consensus 74 ta~~~ 78 (308)
T cd05292 74 TAGAN 78 (308)
T ss_pred ccCCC
Confidence 87654
No 392
>PLN00198 anthocyanidin reductase; Provisional
Probab=90.38 E-value=1.6 Score=43.53 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=47.7
Q ss_pred hhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCCcccccc---cccccCcceEEEEeecCCcc-cHHhhcCCCcEEE
Q 013384 91 LLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNN---MHRINSTVHIIEHREALRTS-NALEILSQYEIVV 165 (444)
Q Consensus 91 L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sN---l~Rlnp~~~v~~~~~~~~~~-~~~~~~~~~DvVi 165 (444)
.++++|+|.| +|.+|+.+++.|...|. ++.+++.|.-.... +..+...-.++.+...+... ....++.++|+||
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 85 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGY-AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF 85 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCC-EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence 3467899999 66799999999999986 56555444211110 11110001345555555543 3456678899999
Q ss_pred EccC
Q 013384 166 DATD 169 (444)
Q Consensus 166 ~~~D 169 (444)
.+..
T Consensus 86 h~A~ 89 (338)
T PLN00198 86 HVAT 89 (338)
T ss_pred EeCC
Confidence 7764
No 393
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=90.32 E-value=0.36 Score=49.53 Aligned_cols=43 Identities=23% Similarity=0.502 Sum_probs=35.0
Q ss_pred cCcEEEECCCccHHHHHHHHHHc-CCCcEEEeeCCccccccccc
Q 013384 93 KSSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHR 135 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~~-Gvg~i~lvD~D~V~~sNl~R 135 (444)
...|+|||+|-+|+.+|..|++. |..+++|+|.+.+-.....|
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~ 73 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGR 73 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCccccc
Confidence 45799999999999999999985 87789999998765433333
No 394
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=90.32 E-value=1.3 Score=42.68 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=24.7
Q ss_pred cEEEECC-CccHHHHHHHHHHcCCCcEEEeeC
Q 013384 95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (444)
Q Consensus 95 ~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~ 125 (444)
+|+|+|+ |.+|+.+++.|...|. ++++++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-VVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCC
Confidence 5899995 8899999999999885 5666654
No 395
>PRK07062 short chain dehydrogenase; Provisional
Probab=90.31 E-value=0.72 Score=44.04 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=29.5
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.|+++.++|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~ 41 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRD 41 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence 367889999996 6799999999999997 57776654
No 396
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=90.31 E-value=1.8 Score=41.67 Aligned_cols=91 Identities=19% Similarity=0.194 Sum_probs=66.1
Q ss_pred cCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecC-CcccHHhhc--CCCcEEEEccC
Q 013384 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREAL-RTSNALEIL--SQYEIVVDATD 169 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~-~~~~~~~~~--~~~DvVi~~~D 169 (444)
..+|+|+|--+=|..++..|...|+.-+.=+-.+.-. .....+..+...+ +.+...+++ ++.++|||+|-
T Consensus 2 ~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~~g~-------~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATH 74 (248)
T PRK08057 2 MPRILLLGGTSEARALARALAAAGVDIVLSLAGRTGG-------PADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATH 74 (248)
T ss_pred CceEEEEechHHHHHHHHHHHhCCCeEEEEEccCCCC-------cccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCC
Confidence 3579999888889999999999987555444333211 1122345566677 666677777 47899999999
Q ss_pred ChHh--HHHHHHHHHHcCCcEEE
Q 013384 170 NAPS--RYMISDCCVVLGKPLVS 190 (444)
Q Consensus 170 ~~~~--r~~i~~~~~~~~~p~i~ 190 (444)
.++. ...+.++|.+.++|++-
T Consensus 75 PfA~~is~~a~~ac~~~~ipyiR 97 (248)
T PRK08057 75 PYAAQISANAAAACRALGIPYLR 97 (248)
T ss_pred ccHHHHHHHHHHHHHHhCCcEEE
Confidence 9865 45788899999999984
No 397
>PRK06198 short chain dehydrogenase; Provisional
Probab=90.29 E-value=0.63 Score=44.20 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=31.9
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+++++|+|.|+ |++|..+++.|+..|..++.++|.+
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 467889999995 7899999999999998778888764
No 398
>PRK07060 short chain dehydrogenase; Provisional
Probab=90.28 E-value=0.43 Score=44.84 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=29.7
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeC
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~ 125 (444)
.+++++++|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r 41 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAAR 41 (245)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence 367789999997 7899999999999997 5777764
No 399
>PRK05867 short chain dehydrogenase; Provisional
Probab=90.27 E-value=0.6 Score=44.30 Aligned_cols=36 Identities=25% Similarity=0.450 Sum_probs=29.7
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+++++|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~ 42 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARH 42 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCC
Confidence 367889999996 7899999999999997 57776643
No 400
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=90.25 E-value=0.34 Score=50.28 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=35.5
Q ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCCCceeEeecCCCeEEE
Q 013384 234 GVVPGIIGCLQALEAIKVASAVGEPLSGRMLLFDALSARIRI 275 (444)
Q Consensus 234 ~~~~~i~g~l~a~e~lk~l~g~~~~~~~~~~~~d~~~~~~~~ 275 (444)
.++++++|+++|+|+||+++....|+.| .++||+.+.+..+
T Consensus 384 ~~~~~~~gg~~aqE~iK~~t~q~vp~~n-~~i~dg~~~~s~~ 424 (425)
T cd01493 384 HNISAFMGGIAAQEVIKLITKQYVPIDN-TFIFDGIRSKSAT 424 (425)
T ss_pred chHHHHHhHHHHHHHHHHHhccccccCC-ceEEeccccceec
Confidence 6788999999999999999999888755 8899999877543
No 401
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=90.24 E-value=1.3 Score=48.67 Aligned_cols=108 Identities=15% Similarity=0.197 Sum_probs=62.9
Q ss_pred hhcCcEEEEC-CCccHHHHHHHHHHcCCC-cEEEeeCCcc--cccccccccCcceEEEEeecCCcccH-Hhhc--CCCcE
Q 013384 91 LLKSSILVIG-AGGLGSPALLYLAACGVG-RLGIVDHDVV--ELNNMHRINSTVHIIEHREALRTSNA-LEIL--SQYEI 163 (444)
Q Consensus 91 L~~~~VlIvG-~GglGs~ia~~La~~Gvg-~i~lvD~D~V--~~sNl~Rlnp~~~v~~~~~~~~~~~~-~~~~--~~~Dv 163 (444)
.+.++|+|.| +|-+|+.++..|...|-+ ++..+|...- ...++......-.++.+...+..... ...+ .++|+
T Consensus 4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~ 83 (668)
T PLN02260 4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDT 83 (668)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCE
Confidence 4568999999 577999999999998643 6777775210 11122111112245555556654332 2233 57999
Q ss_pred EEEccCChHh-----------------HHHHHHHHHHcC--CcEEEEcccCCcc
Q 013384 164 VVDATDNAPS-----------------RYMISDCCVVLG--KPLVSGAALGLEG 198 (444)
Q Consensus 164 Vi~~~D~~~~-----------------r~~i~~~~~~~~--~p~i~~~~~g~~G 198 (444)
||.+...... -..+-++|...+ +.+|+.++...+|
T Consensus 84 ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg 137 (668)
T PLN02260 84 IMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYG 137 (668)
T ss_pred EEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhC
Confidence 9987643210 123455676665 3688877654444
No 402
>PRK12320 hypothetical protein; Provisional
Probab=90.23 E-value=1.5 Score=48.36 Aligned_cols=92 Identities=15% Similarity=0.182 Sum_probs=59.4
Q ss_pred cEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCCh--
Q 013384 95 SILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA-- 171 (444)
Q Consensus 95 ~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~-- 171 (444)
+|+|.| +|-+|+.++..|...|. +++.+|...-.. .++. ++.+...+......+.+.++|+||.+.-..
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~-~Vi~ldr~~~~~-----~~~~--ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~~~ 73 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGH-TVSGIAQHPHDA-----LDPR--VDYVCASLRNPVLQELAGEADAVIHLAPVDTS 73 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-EEEEEeCChhhc-----ccCC--ceEEEccCCCHHHHHHhcCCCEEEEcCccCcc
Confidence 699999 68899999999999985 677777532110 1233 333444444434456677899999876321
Q ss_pred -------HhHHHHHHHHHHcCCcEEEEccc
Q 013384 172 -------PSRYMISDCCVVLGKPLVSGAAL 194 (444)
Q Consensus 172 -------~~r~~i~~~~~~~~~p~i~~~~~ 194 (444)
..-..+-++|.+.++.+|..+..
T Consensus 74 ~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~ 103 (699)
T PRK12320 74 APGGVGITGLAHVANAAARAGARLLFVSQA 103 (699)
T ss_pred chhhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 11224556788888888887644
No 403
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=90.20 E-value=0.82 Score=46.45 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccCCCC----CCCCCCCCCCCCHHHH
Q 013384 13 VLGEIETLKAAKSDIDYRISALEAQLRDTTVSQPQTDTVSNGS----YRPSSAVDYGLSPDMI 71 (444)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~ 71 (444)
-..+|+.|++|+..|+.|+.+|+++|+..+...+......+.. ..|.....+.|++++.
T Consensus 23 ~a~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~ 85 (514)
T PF11336_consen 23 TADQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDA 85 (514)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHH
Confidence 3578999999999999999999999987765443211111111 1122234678999887
No 404
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.18 E-value=0.47 Score=49.80 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=50.5
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCCh
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA 171 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~ 171 (444)
.+++|+|+|+|-.|..+++.|.. |+ .+++.|.......-+..+. .. .+ +. ....+.+.++|+||-...=+
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~-~v~v~D~~~~~~~~~~~~~-~~---~~---~~-~~~~~~~~~~d~vV~SPgI~ 74 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KY-DVIVYDDLKANRDIFEELY-SK---NA---IA-ALSDSRWQNLDKIVLSPGIP 74 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CC-EEEEECCCCCchHHHHhhh-cC---ce---ec-cCChhHhhCCCEEEECCCCC
Confidence 36789999999999999999995 86 7888884322111010010 00 11 11 11123456899998654322
Q ss_pred HhHHHHHHHHHHcCCcEEE
Q 013384 172 PSRYMISDCCVVLGKPLVS 190 (444)
Q Consensus 172 ~~r~~i~~~~~~~~~p~i~ 190 (444)
.. ...-..+++.++|+++
T Consensus 75 ~~-~p~~~~a~~~gi~v~~ 92 (454)
T PRK01368 75 LT-HEIVKIAKNFNIPITS 92 (454)
T ss_pred CC-CHHHHHHHHCCCceec
Confidence 22 1233345667777764
No 405
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=90.18 E-value=1.4 Score=44.14 Aligned_cols=77 Identities=16% Similarity=0.114 Sum_probs=46.7
Q ss_pred hcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCCcccccccc-cccCcceEEEEeecCCc-ccHHhhcCCCcEEEEcc
Q 013384 92 LKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMH-RINSTVHIIEHREALRT-SNALEILSQYEIVVDAT 168 (444)
Q Consensus 92 ~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~-Rlnp~~~v~~~~~~~~~-~~~~~~~~~~DvVi~~~ 168 (444)
.+.+|+|.| +|.+|+.+++.|+..|. ++.+++.+.-....+. .+.....++.+...+.. +...+++.++|+||.+.
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A 87 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA 87 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence 355899999 57799999999999986 4555554321111110 01112235555555553 33456677899999775
Q ss_pred C
Q 013384 169 D 169 (444)
Q Consensus 169 D 169 (444)
.
T Consensus 88 ~ 88 (353)
T PLN02896 88 A 88 (353)
T ss_pred c
Confidence 3
No 406
>PRK08655 prephenate dehydrogenase; Provisional
Probab=90.17 E-value=0.78 Score=47.90 Aligned_cols=89 Identities=17% Similarity=0.259 Sum_probs=54.8
Q ss_pred cEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCChHh
Q 013384 95 SILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNAPS 173 (444)
Q Consensus 95 ~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~~~ 173 (444)
+|+||| +|.+|..++..|...|. ++.++|.+.-....+.. ...+. . ..+..+.+.++|+||.|+-....
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~~~~~~~~a~---~~gv~-----~-~~~~~e~~~~aDvVIlavp~~~~ 71 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRDPKKGKEVAK---ELGVE-----Y-ANDNIDAAKDADIVIISVPINVT 71 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECChHHHHHHHH---HcCCe-----e-ccCHHHHhccCCEEEEecCHHHH
Confidence 699997 89999999999999996 68888865322111111 00111 0 12234456788999988876555
Q ss_pred HHHHHHHHH--HcCCcEEEEcc
Q 013384 174 RYMISDCCV--VLGKPLVSGAA 193 (444)
Q Consensus 174 r~~i~~~~~--~~~~p~i~~~~ 193 (444)
...+.+.+. ..+..+++.+.
T Consensus 72 ~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 72 EDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred HHHHHHHHhhCCCCCEEEEccc
Confidence 555555543 23445666553
No 407
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=90.14 E-value=0.63 Score=44.23 Aligned_cols=37 Identities=30% Similarity=0.350 Sum_probs=30.1
Q ss_pred hhhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 90 ~L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
+|.+++|+|.| .|++|..+++.|+..|. ++.++|.+.
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~ 40 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKP 40 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCH
Confidence 36678899998 48899999999999997 577776543
No 408
>PRK06392 homoserine dehydrogenase; Provisional
Probab=90.13 E-value=0.9 Score=45.49 Aligned_cols=95 Identities=17% Similarity=0.239 Sum_probs=52.1
Q ss_pred cEEEECCCccHHHHHHHHHH--------cCCCcEEEeeCCc--ccccccc--c----ccCcceEEEEeecCCcccHHhhc
Q 013384 95 SILVIGAGGLGSPALLYLAA--------CGVGRLGIVDHDV--VELNNMH--R----INSTVHIIEHREALRTSNALEIL 158 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~--------~Gvg~i~lvD~D~--V~~sNl~--R----lnp~~~v~~~~~~~~~~~~~~~~ 158 (444)
+|.|+|+|.+|+.+++.|.. .++.-+.+.|... +.+.-++ . ... -.+..+. ...-+..+++
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~--~~~~~~~~ll 78 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEID--YEKIKFDEIF 78 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCC--CCcCCHHHHh
Confidence 79999999999999999977 2333455556432 1111110 0 000 0111111 0101223332
Q ss_pred -CCCcEEEEccCChHh---HHHHHHHHHHcCCcEEEEc
Q 013384 159 -SQYEIVVDATDNAPS---RYMISDCCVVLGKPLVSGA 192 (444)
Q Consensus 159 -~~~DvVi~~~D~~~~---r~~i~~~~~~~~~p~i~~~ 192 (444)
.++|+||+|+-+... -+.+-..+.+.|+.+|.+.
T Consensus 79 ~~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaN 116 (326)
T PRK06392 79 EIKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTAN 116 (326)
T ss_pred cCCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCC
Confidence 468999999953211 2334456778999998865
No 409
>PRK12939 short chain dehydrogenase; Provisional
Probab=90.10 E-value=0.65 Score=43.68 Aligned_cols=36 Identities=36% Similarity=0.402 Sum_probs=28.8
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~ 40 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGL 40 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCC
Confidence 356789999995 7899999999999997 46665543
No 410
>PRK08589 short chain dehydrogenase; Validated
Probab=90.10 E-value=0.64 Score=44.82 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=29.8
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
+|++++|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~ 39 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA 39 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc
Confidence 467889999995 7899999999999996 67776654
No 411
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.09 E-value=0.35 Score=48.17 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=30.8
Q ss_pred cCcEEEECCCccHHHHHHHHHHcCCC-cEEEeeCCc
Q 013384 93 KSSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDV 127 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~~Gvg-~i~lvD~D~ 127 (444)
..||.|||+|.+|+.+|..|+..|.. +|.|+|-+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 35899999999999999999999985 699999643
No 412
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=90.08 E-value=0.89 Score=45.29 Aligned_cols=96 Identities=20% Similarity=0.240 Sum_probs=62.1
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-------ccCcceEEEEeecCCcccHHhhcC-CCcE
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-------INSTVHIIEHREALRTSNALEILS-QYEI 163 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-------lnp~~~v~~~~~~~~~~~~~~~~~-~~Dv 163 (444)
...+|.|+|+||+|-.+.+-+..+|.++|.-||-+.-.. .+.+ +||.-.. .+ -+.+.++-. ..|.
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl-~~A~~fGAT~~vn~~~~~-----~v-v~~i~~~T~gG~d~ 257 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKL-ELAKKFGATHFVNPKEVD-----DV-VEAIVELTDGGADY 257 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHH-HHHHhcCCceeecchhhh-----hH-HHHHHHhcCCCCCE
Confidence 567899999999999999999999999999998543221 1122 3432100 00 012233334 7999
Q ss_pred EEEccCChHhHHHHHHHHHHcCCcEEEEcccC
Q 013384 164 VVDATDNAPSRYMISDCCVVLGKPLVSGAALG 195 (444)
Q Consensus 164 Vi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g 195 (444)
+|+|+.+.++...--+.+.+-|. .+..+.-+
T Consensus 258 ~~e~~G~~~~~~~al~~~~~~G~-~v~iGv~~ 288 (366)
T COG1062 258 AFECVGNVEVMRQALEATHRGGT-SVIIGVAG 288 (366)
T ss_pred EEEccCCHHHHHHHHHHHhcCCe-EEEEecCC
Confidence 99999999876555556666555 33333333
No 413
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=90.03 E-value=0.76 Score=45.25 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=47.4
Q ss_pred cCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCCccccccccc---ccC-cceEEEEeecCCc-ccHHhhcCCCcEEEE
Q 013384 93 KSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR---INS-TVHIIEHREALRT-SNALEILSQYEIVVD 166 (444)
Q Consensus 93 ~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R---lnp-~~~v~~~~~~~~~-~~~~~~~~~~DvVi~ 166 (444)
+++|+|.| +|.+|+.+++.|...|. ++.+++.+......... ... ...++.+...+.. +....+++++|+||.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY-TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC-EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 57899999 58899999999999987 56555555332211111 100 1134445445543 345567788999987
Q ss_pred cc
Q 013384 167 AT 168 (444)
Q Consensus 167 ~~ 168 (444)
+.
T Consensus 83 ~A 84 (322)
T PLN02662 83 TA 84 (322)
T ss_pred eC
Confidence 75
No 414
>PRK06500 short chain dehydrogenase; Provisional
Probab=90.01 E-value=0.65 Score=43.68 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=29.6
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
++++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~ 39 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGA-RVAITGRD 39 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCC
Confidence 466789999995 7799999999999997 57776653
No 415
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.00 E-value=0.76 Score=43.70 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=30.3
Q ss_pred hhhcCcEEEECCC---ccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGAG---GLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~G---glGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.|++++|+|.|++ |+|..+++.|+..|. ++.+++..
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~ 40 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS 40 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence 4677889999984 799999999999996 78887654
No 416
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=89.96 E-value=0.62 Score=50.27 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=31.2
Q ss_pred hhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 91 LLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 91 L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
-.+++|+|||+|..|-.+|..|++.|. +++++|..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 357899999999999999999999998 59999853
No 417
>PTZ00188 adrenodoxin reductase; Provisional
Probab=89.95 E-value=1 Score=47.58 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=49.3
Q ss_pred hcCcEEEECCCccHHHHHHHHH-HcCCCcEEEeeCCcccc--------------ccccc------ccCcceEEEEeecCC
Q 013384 92 LKSSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDVVEL--------------NNMHR------INSTVHIIEHREALR 150 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La-~~Gvg~i~lvD~D~V~~--------------sNl~R------lnp~~~v~~~~~~~~ 150 (444)
+.++|+|||+|..|.++|..|+ ..|+ +++|+|....-- .++-+ .++.+++. .+..+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~-gnv~VG 115 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFF-GNVHVG 115 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEE-eeeEec
Confidence 4678999999999999999765 5565 588877643321 11111 23444443 223332
Q ss_pred cc-cHHhhcCCCcEEEEccCCh
Q 013384 151 TS-NALEILSQYEIVVDATDNA 171 (444)
Q Consensus 151 ~~-~~~~~~~~~DvVi~~~D~~ 171 (444)
.+ ...++...||.||.++...
T Consensus 116 ~Dvt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 116 VDLKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred CccCHHHHHhcCCEEEEEcCCC
Confidence 22 3556667899999988764
No 418
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=89.92 E-value=0.8 Score=45.89 Aligned_cols=32 Identities=34% Similarity=0.545 Sum_probs=28.6
Q ss_pred cCcEEEECCCccHHHHHHHHHHcCCCcEEEeeC
Q 013384 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~ 125 (444)
.++|+|+|+||+|...++++..+| -+++.+|.
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~ 198 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITR 198 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeC
Confidence 678999999999999999999999 78888775
No 419
>PRK06949 short chain dehydrogenase; Provisional
Probab=89.91 E-value=0.67 Score=43.93 Aligned_cols=35 Identities=31% Similarity=0.421 Sum_probs=29.3
Q ss_pred hhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 91 L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
+.+++|+|.|+ |++|..+++.|++.|. ++.+++.+
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~ 42 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRR 42 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 67789999995 8899999999999998 57776543
No 420
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.88 E-value=0.99 Score=44.17 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=57.5
Q ss_pred HhhhcCcEEEECCCc-cHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEc
Q 013384 89 SNLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 89 ~~L~~~~VlIvG~Gg-lGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
..|++++|+|||-|. +|.+++..|...|. .+++++. ...+..+..+++|+||.+
T Consensus 155 i~l~Gk~vvViGrs~iVG~Pla~lL~~~~a-tVtv~hs------------------------~T~~l~~~~~~ADIvi~a 209 (285)
T PRK10792 155 IDTYGLNAVVVGASNIVGRPMSLELLLAGC-TVTVCHR------------------------FTKNLRHHVRNADLLVVA 209 (285)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCC-eEEEEEC------------------------CCCCHHHHHhhCCEEEEc
Confidence 368899999999998 89999999988774 5555431 124566778999999999
Q ss_pred cCChHhHHHHHHHHHHcCCcEEEEcccC
Q 013384 168 TDNAPSRYMISDCCVVLGKPLVSGAALG 195 (444)
Q Consensus 168 ~D~~~~r~~i~~~~~~~~~p~i~~~~~g 195 (444)
+..+.. +..--.+.+.-+|+++...
T Consensus 210 vG~p~~---v~~~~vk~gavVIDvGin~ 234 (285)
T PRK10792 210 VGKPGF---IPGEWIKPGAIVIDVGINR 234 (285)
T ss_pred CCCccc---ccHHHcCCCcEEEEccccc
Confidence 977653 2223345666788887543
No 421
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=89.86 E-value=1.7 Score=43.33 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=59.2
Q ss_pred CcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCccc--cccccccc----C--cceEEEEeecCCc-ccHHhhcC--CC
Q 013384 94 SSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVE--LNNMHRIN----S--TVHIIEHREALRT-SNALEILS--QY 161 (444)
Q Consensus 94 ~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~--~sNl~Rln----p--~~~v~~~~~~~~~-~~~~~~~~--~~ 161 (444)
++|+|.|+ |.+|+++++.|+..|. ++.++|...-. ...+..+. + ...++.+...+.+ +...+.+. ++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~ 79 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKP 79 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCC
Confidence 47899985 7799999999999997 56777654211 11111110 0 1234455555554 33455565 36
Q ss_pred cEEEEccCC---------hHh--------HHHHHHHHHHcCC----cEEEEcccCCcc
Q 013384 162 EIVVDATDN---------APS--------RYMISDCCVVLGK----PLVSGAALGLEG 198 (444)
Q Consensus 162 DvVi~~~D~---------~~~--------r~~i~~~~~~~~~----p~i~~~~~g~~G 198 (444)
|+||.+... +.. -..+-++|...++ ++|+.++...+|
T Consensus 80 d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg 137 (343)
T TIGR01472 80 TEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYG 137 (343)
T ss_pred CEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhC
Confidence 999977542 111 1234455666553 577777655555
No 422
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=89.85 E-value=0.35 Score=48.88 Aligned_cols=35 Identities=37% Similarity=0.541 Sum_probs=31.3
Q ss_pred cCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcc
Q 013384 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V 128 (444)
...|+|||+|-+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 4569999999999999999999996 7999998764
No 423
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.81 E-value=0.94 Score=47.31 Aligned_cols=89 Identities=16% Similarity=0.242 Sum_probs=52.4
Q ss_pred cCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccc---cCcceEEEEeecCCcccHHhhcCCCcEEEEccC
Q 013384 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRI---NSTVHIIEHREALRTSNALEILSQYEIVVDATD 169 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rl---np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D 169 (444)
+..|+|+|.|+.|-.+|+.|...|. ++++.|...-.. ...++ ++.+.+. .... ..+.+.++|+||-...
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~~~-~~~~l~~~~~g~~~~--~~~~----~~~~~~~~d~vV~sp~ 77 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSREQPP-GLDTLAREFPDVELR--CGGF----DCELLVQASEIIISPG 77 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCCCCch-hHHHHHhhcCCcEEE--eCCC----ChHHhcCCCEEEECCC
Confidence 4579999999999999999999997 788888643110 00111 1233322 1111 1234567899886653
Q ss_pred ChHhHHHHHHHHHHcCCcEEE
Q 013384 170 NAPSRYMISDCCVVLGKPLVS 190 (444)
Q Consensus 170 ~~~~r~~i~~~~~~~~~p~i~ 190 (444)
-++.. -.-..++..++|+++
T Consensus 78 i~~~~-p~~~~a~~~~i~i~~ 97 (448)
T PRK03803 78 LALDT-PALRAAAAMGIEVIG 97 (448)
T ss_pred CCCCC-HHHHHHHHCCCcEEE
Confidence 22222 223345666777765
No 424
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=89.79 E-value=1.1 Score=45.20 Aligned_cols=95 Identities=18% Similarity=0.155 Sum_probs=55.4
Q ss_pred CcEEEECCCccHHHHHHHHHHc-CCCcEEEeeCCccccccccc----c--c-----Cc-ce-EEEEeecCCcccHHhhcC
Q 013384 94 SSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHR----I--N-----ST-VH-IIEHREALRTSNALEILS 159 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~-Gvg~i~lvD~D~V~~sNl~R----l--n-----p~-~~-v~~~~~~~~~~~~~~~~~ 159 (444)
-||.|+|+|.+|..++..+... ++.=..+.|.+. ..... . . |. .. +......+ .....+++.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~---~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V-~~~~~el~~ 77 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKP---DYEARVAVEKGYPLYVADPEREKAFEEAGIPV-AGTIEDLLE 77 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCCh---HHHHHHHHhcCCCccccCccccccccCCceEE-cCChhHhhc
Confidence 3799999999999999987753 444455555431 10000 0 0 00 00 00000011 123345567
Q ss_pred CCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcc
Q 013384 160 QYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAA 193 (444)
Q Consensus 160 ~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~ 193 (444)
++|+||+|+.....+.. ...+.+.|+++|+.+.
T Consensus 78 ~vDVVIdaT~~~~~~e~-a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 78 KADIVVDATPGGVGAKN-KELYEKAGVKAIFQGG 110 (341)
T ss_pred cCCEEEECCCchhhHHH-HHHHHHCCCEEEEcCC
Confidence 89999999987655544 4567778899888654
No 425
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=89.79 E-value=0.35 Score=49.67 Aligned_cols=33 Identities=36% Similarity=0.440 Sum_probs=30.5
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
++|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 589999999999999999999996 799999876
No 426
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=89.77 E-value=0.33 Score=46.91 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=44.2
Q ss_pred EEEECC-CccHHHHHHHHHHcC--C-CcEEEeeCCccccccccc-----ccC--cceEEEEeecCCcccHHhhcCCCcEE
Q 013384 96 ILVIGA-GGLGSPALLYLAACG--V-GRLGIVDHDVVELNNMHR-----INS--TVHIIEHREALRTSNALEILSQYEIV 164 (444)
Q Consensus 96 VlIvG~-GglGs~ia~~La~~G--v-g~i~lvD~D~V~~sNl~R-----lnp--~~~v~~~~~~~~~~~~~~~~~~~DvV 164 (444)
|.|||+ |.+|..++..|+..| . .+|.|+|.+.-...-... ..+ ..+++. + .+..+.+.++|+|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~-----~-~d~~~~~~~aDiV 74 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI-----T-DDPYEAFKDADVV 74 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEE-----C-CchHHHhCCCCEE
Confidence 689999 889999999999998 4 689999976622111111 112 222221 1 2224556899999
Q ss_pred EEccCC
Q 013384 165 VDATDN 170 (444)
Q Consensus 165 i~~~D~ 170 (444)
|.+...
T Consensus 75 v~t~~~ 80 (263)
T cd00650 75 IITAGV 80 (263)
T ss_pred EECCCC
Confidence 986543
No 427
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=89.76 E-value=0.6 Score=51.32 Aligned_cols=62 Identities=24% Similarity=0.288 Sum_probs=41.8
Q ss_pred CCCCHHHHhhhhccccC-CCCCHH-HHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 64 YGLSPDMIYRYSRHLLL-PSFGVE-GQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 64 ~~l~~~~~~ry~Rq~~l-~~~g~~-~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+++-..++||--...+ ..|... .+..-.+++|+|||+|..|-.+|.+|++.|. +++|+|.+
T Consensus 296 ~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~ 359 (654)
T PRK12769 296 GAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRH 359 (654)
T ss_pred CCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 35666777887422211 011110 1112357899999999999999999999997 48999864
No 428
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=89.72 E-value=0.48 Score=41.62 Aligned_cols=76 Identities=13% Similarity=0.256 Sum_probs=47.3
Q ss_pred CcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCC--ccccccc-ccc-cCcceEEEEeecCCcc-cH-------HhhcCC
Q 013384 94 SSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD--VVELNNM-HRI-NSTVHIIEHREALRTS-NA-------LEILSQ 160 (444)
Q Consensus 94 ~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D--~V~~sNl-~Rl-np~~~v~~~~~~~~~~-~~-------~~~~~~ 160 (444)
+.|+|.| .+|+|.++++.|++.|-.++.+++.+ .-....+ ..+ .+..++..+...+... .. .+.+..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4688898 77899999999999999999998876 1111111 111 2345566665555431 11 122356
Q ss_pred CcEEEEccC
Q 013384 161 YEIVVDATD 169 (444)
Q Consensus 161 ~DvVi~~~D 169 (444)
.|++|.+..
T Consensus 81 ld~li~~ag 89 (167)
T PF00106_consen 81 LDILINNAG 89 (167)
T ss_dssp ESEEEEECS
T ss_pred ccccccccc
Confidence 788876654
No 429
>PRK07814 short chain dehydrogenase; Provisional
Probab=89.72 E-value=0.71 Score=44.19 Aligned_cols=35 Identities=31% Similarity=0.411 Sum_probs=30.0
Q ss_pred hhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 91 L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 67889999985 4699999999999998 88888765
No 430
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.71 E-value=0.31 Score=54.12 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=30.8
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccc
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE 129 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~ 129 (444)
++|.|||+|..|+.||..++.+|. .++++|.+.-.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~ 348 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKA 348 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHH
Confidence 579999999999999999999997 89999976443
No 431
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=89.70 E-value=2.5 Score=41.41 Aligned_cols=136 Identities=23% Similarity=0.296 Sum_probs=73.8
Q ss_pred CCHHHHhhhhccccCCC-CCHHHHHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccc-------c--
Q 013384 66 LSPDMIYRYSRHLLLPS-FGVEGQSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMH-------R-- 135 (444)
Q Consensus 66 l~~~~~~ry~Rq~~l~~-~g~~~q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~-------R-- 135 (444)
+++..++.++|.+.-+. .-...|.--...+|..||+|-.|+.++.+|..+|. ++++.|-+.=....+. +
T Consensus 7 ~~~~~l~~~~~~~~~~~~~~~s~~~~~s~~~iGFIGLG~MG~~M~~nLik~G~-kVtV~dr~~~k~~~f~~~Ga~v~~sP 85 (327)
T KOG0409|consen 7 LAPSILEAFSRRLVKASETAMSSRITPSKTRIGFIGLGNMGSAMVSNLIKAGY-KVTVYDRTKDKCKEFQEAGARVANSP 85 (327)
T ss_pred cccHHHHhhcccccccccccccccCCcccceeeEEeeccchHHHHHHHHHcCC-EEEEEeCcHHHHHHHHHhchhhhCCH
Confidence 34445555555443211 11122223357889999999999999999999996 7788773221111000 0
Q ss_pred ----ccCcceEEEEeecCCcccHHhhc-------C-----CCcEEEEccCChHhHHHHHHHHHHcCCcEEEEcccC----
Q 013384 136 ----INSTVHIIEHREALRTSNALEIL-------S-----QYEIVVDATDNAPSRYMISDCCVVLGKPLVSGAALG---- 195 (444)
Q Consensus 136 ----lnp~~~v~~~~~~~~~~~~~~~~-------~-----~~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~g---- 195 (444)
-..++.+...+.. ..+.+.+ + +...|-..|-+|.+-..|.+.....+.-+|++-+.|
T Consensus 86 aeVae~sDvvitmv~~~---~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~ 162 (327)
T KOG0409|consen 86 AEVAEDSDVVITMVPNP---KDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKG 162 (327)
T ss_pred HHHHhhcCEEEEEcCCh---HhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchh
Confidence 1223333222211 1122221 1 122233344566777788888877787787764433
Q ss_pred -CcceEEEEeC
Q 013384 196 -LEGQLTVYNY 205 (444)
Q Consensus 196 -~~G~l~~~~~ 205 (444)
-.|.++++--
T Consensus 163 A~~G~Ltimag 173 (327)
T KOG0409|consen 163 AEEGTLTIMAG 173 (327)
T ss_pred hhcCeEEEEec
Confidence 3477777654
No 432
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=89.65 E-value=1.2 Score=43.71 Aligned_cols=89 Identities=16% Similarity=0.230 Sum_probs=52.5
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccccc-CcceEEEEeecCCcccHHhhcCCCcEEEEccCCh-
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRIN-STVHIIEHREALRTSNALEILSQYEIVVDATDNA- 171 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rln-p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~- 171 (444)
.+|.|||+|.+|..++..|++.|. ++.++|.+.-. +.++. ..+. ...+..+.++++|+||.|+.+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~~~---~~~~~~~g~~--------~~~~~~e~~~~~d~vi~~vp~~~ 70 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEA---VAEVIAAGAE--------TASTAKAVAEQCDVIITMLPNSP 70 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHH---HHHHHHCCCe--------ecCCHHHHHhcCCEEEEeCCCHH
Confidence 379999999999999999999986 56777754311 11110 0110 1123445667899999888643
Q ss_pred HhHHHHH---HHH--HHcCCcEEEEccc
Q 013384 172 PSRYMIS---DCC--VVLGKPLVSGAAL 194 (444)
Q Consensus 172 ~~r~~i~---~~~--~~~~~p~i~~~~~ 194 (444)
..+..+. ... ...+.-+++.++.
T Consensus 71 ~~~~v~~~~~~~~~~~~~g~iiid~st~ 98 (296)
T PRK11559 71 HVKEVALGENGIIEGAKPGTVVIDMSSI 98 (296)
T ss_pred HHHHHHcCcchHhhcCCCCcEEEECCCC
Confidence 3444431 111 1334456665543
No 433
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=89.62 E-value=0.73 Score=44.72 Aligned_cols=34 Identities=38% Similarity=0.451 Sum_probs=29.9
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeC
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDH 125 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~ 125 (444)
.+.+|+|.|+|++|..+++.+...|+.++.++|.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~ 153 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADP 153 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 5789999999999999999888899987888764
No 434
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=89.60 E-value=0.72 Score=43.89 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=30.3
Q ss_pred hhhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
++++++|+|.| .|++|..+++.|+..|. ++.++|.+
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~ 45 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARK 45 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 57789999998 57899999999999997 67777653
No 435
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=89.58 E-value=0.57 Score=46.97 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=29.0
Q ss_pred hcCcEEEECCCccHHHHHHHHHH-cCCCcEEEeeCC
Q 013384 92 LKSSILVIGAGGLGSPALLYLAA-CGVGRLGIVDHD 126 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~-~Gvg~i~lvD~D 126 (444)
.+.+|+|+|+|++|..++..+.+ .|..+++++|.+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~ 198 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKH 198 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCc
Confidence 36789999999999998888876 577788888754
No 436
>PRK06349 homoserine dehydrogenase; Provisional
Probab=89.56 E-value=1.2 Score=46.39 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=54.3
Q ss_pred cCcEEEECCCccHHHHHHHHHHc--------C--CCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcC--C
Q 013384 93 KSSILVIGAGGLGSPALLYLAAC--------G--VGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILS--Q 160 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~~--------G--vg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~--~ 160 (444)
.-+|.|+|+|.+|+.+++.|... | +.-..++|.|.-.... ... ....+ ..+..+++. +
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~---~~~------~~~~~-~~d~~~ll~d~~ 72 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRG---VDL------PGILL-TTDPEELVNDPD 72 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccC---CCC------cccce-eCCHHHHhhCCC
Confidence 35899999999999999887543 2 2234455655321110 100 00011 134556664 5
Q ss_pred CcEEEEccCChHhHHHHHHHHHHcCCcEEEE
Q 013384 161 YEIVVDATDNAPSRYMISDCCVVLGKPLVSG 191 (444)
Q Consensus 161 ~DvVi~~~D~~~~r~~i~~~~~~~~~p~i~~ 191 (444)
.|+|++|+......+.+-..|.+.|+.+|..
T Consensus 73 iDvVve~tg~~~~~~~~~~~aL~~GkhVVta 103 (426)
T PRK06349 73 IDIVVELMGGIEPARELILKALEAGKHVVTA 103 (426)
T ss_pred CCEEEECCCCchHHHHHHHHHHHCCCeEEEc
Confidence 7999999876555556666777888888765
No 437
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.54 E-value=0.77 Score=44.94 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=57.1
Q ss_pred HHhhhcCcEEEECCC-ccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEE
Q 013384 88 QSNLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVD 166 (444)
Q Consensus 88 q~~L~~~~VlIvG~G-glGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~ 166 (444)
+..|++++|+|||-| -+|.+++..|...|. .+++++. ...+..+.++.+|+||.
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gA-tVtv~hs------------------------~t~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGA-SVSVCHI------------------------LTKDLSFYTQNADIVCV 206 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCC-EEEEEeC------------------------CcHHHHHHHHhCCEEEE
Confidence 346889999999999 789999999998874 3444321 12345677899999999
Q ss_pred ccCChHhHHHHHHHHHHcCCcEEEEcccC
Q 013384 167 ATDNAPSRYMISDCCVVLGKPLVSGAALG 195 (444)
Q Consensus 167 ~~D~~~~r~~i~~~~~~~~~p~i~~~~~g 195 (444)
|+..+.. +..--.+.|.-+|+.+...
T Consensus 207 AvG~p~~---i~~~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 207 GVGKPDL---IKASMVKKGAVVVDIGINR 232 (285)
T ss_pred ecCCCCc---CCHHHcCCCcEEEEeeccc
Confidence 9987653 2222236666788887544
No 438
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=89.54 E-value=0.41 Score=47.36 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=30.9
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccc
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVE 129 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~ 129 (444)
.|+|||+|-+|+.+|..|++.|. +++|+|.+.+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~ 34 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIG 34 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTT
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeecccc
Confidence 38999999999999999999998 99999998553
No 439
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=89.53 E-value=0.75 Score=45.09 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=55.1
Q ss_pred EEEEC-CCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCC-ccc-HHhhc-----CCCcEEEEc
Q 013384 96 ILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALR-TSN-ALEIL-----SQYEIVVDA 167 (444)
Q Consensus 96 VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~-~~~-~~~~~-----~~~DvVi~~ 167 (444)
|+|.| +|-+|+++++.|+..|...+.++|...-. .+... ..+... .... .+. ....+ .+.|+||.+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~-~~~~~---~~~~~~--~d~~~~~~~~~~~~~~~~~~~~d~Vih~ 75 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDG-TKFVN---LVDLDI--ADYMDKEDFLAQIMAGDDFGDIEAIFHE 75 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcc-hHHHh---hhhhhh--hhhhhHHHHHHHHhcccccCCccEEEEC
Confidence 78888 57799999999999998778888864211 00000 000000 0000 011 11222 268999987
Q ss_pred cCC-------h--------HhHHHHHHHHHHcCCcEEEEcccCCcc
Q 013384 168 TDN-------A--------PSRYMISDCCVVLGKPLVSGAALGLEG 198 (444)
Q Consensus 168 ~D~-------~--------~~r~~i~~~~~~~~~p~i~~~~~g~~G 198 (444)
... . ..-..|-++|++.++++|+.+....+|
T Consensus 76 A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~SS~~vyg 121 (308)
T PRK11150 76 GACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYG 121 (308)
T ss_pred ceecCCcCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcchHHhC
Confidence 421 1 011235577888888999887665554
No 440
>PRK12829 short chain dehydrogenase; Provisional
Probab=89.52 E-value=0.78 Score=43.55 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=30.7
Q ss_pred HhhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 89 ~~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
..+++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~ 44 (264)
T PRK12829 7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVS 44 (264)
T ss_pred hccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3578899999995 7799999999999998 47777643
No 441
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=89.50 E-value=0.81 Score=45.82 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=28.4
Q ss_pred cEEEECC-CccHHHHHHHHHHcCCC------cEEEeeCC
Q 013384 95 SILVIGA-GGLGSPALLYLAACGVG------RLGIVDHD 126 (444)
Q Consensus 95 ~VlIvG~-GglGs~ia~~La~~Gvg------~i~lvD~D 126 (444)
||+|+|+ |.+|+.++..|+..|+- +|.|+|-.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~ 39 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIP 39 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecC
Confidence 6999999 99999999999998885 49999863
No 442
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=89.45 E-value=2.1 Score=42.12 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=27.6
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
+|.+||+|-.|..++.+|...|. +++++|.+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~ 32 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIG 32 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 59999999999999999999996 67787765
No 443
>PRK05086 malate dehydrogenase; Provisional
Probab=89.41 E-value=1.2 Score=44.26 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=44.9
Q ss_pred CcEEEECC-CccHHHHHHHHHH-cCC-CcEEEeeCCccccccccc-cc--C-cceEEEEeecCCcccHHhhcCCCcEEEE
Q 013384 94 SSILVIGA-GGLGSPALLYLAA-CGV-GRLGIVDHDVVELNNMHR-IN--S-TVHIIEHREALRTSNALEILSQYEIVVD 166 (444)
Q Consensus 94 ~~VlIvG~-GglGs~ia~~La~-~Gv-g~i~lvD~D~V~~sNl~R-ln--p-~~~v~~~~~~~~~~~~~~~~~~~DvVi~ 166 (444)
.||+|||+ |++|+.++..|.. .+. .++.++|.+.. ...... +. + ...+.. ...++..+.++++|+||.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~~~~~i~~----~~~~d~~~~l~~~DiVIi 75 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKG----FSGEDPTPALEGADVVLI 75 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCCCCceEEE----eCCCCHHHHcCCCCEEEE
Confidence 47999999 9999999999865 455 46899986421 111111 11 1 122222 112333455688999998
Q ss_pred ccCCh
Q 013384 167 ATDNA 171 (444)
Q Consensus 167 ~~D~~ 171 (444)
|...+
T Consensus 76 taG~~ 80 (312)
T PRK05086 76 SAGVA 80 (312)
T ss_pred cCCCC
Confidence 87654
No 444
>PRK05854 short chain dehydrogenase; Provisional
Probab=89.41 E-value=0.78 Score=45.41 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=29.2
Q ss_pred hhhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.|++++|+|.| .+|+|.++++.|++.|. ++.+++.+
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~ 47 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRN 47 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35678899998 56799999999999996 67777654
No 445
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.40 E-value=0.73 Score=43.92 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=29.0
Q ss_pred hhhcCcEEEECCC---ccHHHHHHHHHHcCCCcEEEeeC
Q 013384 90 NLLKSSILVIGAG---GLGSPALLYLAACGVGRLGIVDH 125 (444)
Q Consensus 90 ~L~~~~VlIvG~G---glGs~ia~~La~~Gvg~i~lvD~ 125 (444)
+|+++.|+|.|++ |+|..+++.|++.|. ++.+++.
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r 41 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQ 41 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecC
Confidence 3678899999985 899999999999997 4666554
No 446
>PRK07109 short chain dehydrogenase; Provisional
Probab=89.39 E-value=0.68 Score=46.41 Aligned_cols=36 Identities=17% Similarity=0.380 Sum_probs=30.3
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+++++|+|.|+ ||+|..+++.|+..|. ++.+++.+
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~ 41 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLARG 41 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 467788999985 7899999999999996 68887764
No 447
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=89.37 E-value=0.3 Score=51.86 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=29.4
Q ss_pred cCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
-++|.|||+|..|+.+|..|+.+|. .++++|.+.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRA 38 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 3579999999999999999999996 678888653
No 448
>PRK07035 short chain dehydrogenase; Provisional
Probab=89.36 E-value=0.78 Score=43.38 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=30.1
Q ss_pred hhhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.|++++|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~ 41 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRK 41 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46788899998 56799999999999997 78887753
No 449
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=89.36 E-value=0.85 Score=43.25 Aligned_cols=36 Identities=36% Similarity=0.530 Sum_probs=29.7
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGA-AVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCC
Confidence 356788999996 8899999999999998 57776654
No 450
>PRK07478 short chain dehydrogenase; Provisional
Probab=89.35 E-value=0.79 Score=43.45 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=29.4
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+++++|+|.|+ ||+|..+++.|+..|. ++.+++.+
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~ 39 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARR 39 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 356788999985 6799999999999998 57776643
No 451
>PRK07326 short chain dehydrogenase; Provisional
Probab=89.32 E-value=0.77 Score=42.88 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=28.7
Q ss_pred hhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 91 L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
+.+.+|+|+|+ |++|..+++.|+..|. ++.+++.+
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~ 39 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGY-KVAITARD 39 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCC
Confidence 45678999985 7799999999999987 47777654
No 452
>PRK07576 short chain dehydrogenase; Provisional
Probab=89.24 E-value=0.57 Score=44.95 Aligned_cols=37 Identities=14% Similarity=0.341 Sum_probs=30.7
Q ss_pred HhhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 89 SNLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 89 ~~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+|++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~ 42 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRS 42 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4678899999986 7899999999999986 47777654
No 453
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=89.20 E-value=1.1 Score=45.31 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=29.7
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+.+|+|.|+|++|..++..+...|+.++..+|.+
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~ 219 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDIN 219 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 36789999999999999888888999888887654
No 454
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=89.12 E-value=1.8 Score=42.89 Aligned_cols=82 Identities=10% Similarity=0.135 Sum_probs=53.8
Q ss_pred CcEEEECCCc-cHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEee--cCCcccHHhhcCCCcEEEEccCC
Q 013384 94 SSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHRE--ALRTSNALEILSQYEIVVDATDN 170 (444)
Q Consensus 94 ~~VlIvG~Gg-lGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~--~~~~~~~~~~~~~~DvVi~~~D~ 170 (444)
-+|.|+|+.| +|.++++.|+.. .++.++ .... .+...+..+++++.|+||-|+.+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H--P~~el~--------------------~l~s~~~~~~~~~~~~~~~~D~vFlalp~ 59 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR--DDIELL--------------------SIAPDRRKDAAERAKLLNAADVAILCLPD 59 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC--CCeEEE--------------------EEecccccCcCCHhHhhcCCCEEEECCCH
Confidence 3799999766 799999999765 233332 1111 12222334566789999999998
Q ss_pred hHhHHHHHHHHHHcCCcEEEEc-ccCCcc
Q 013384 171 APSRYMISDCCVVLGKPLVSGA-ALGLEG 198 (444)
Q Consensus 171 ~~~r~~i~~~~~~~~~p~i~~~-~~g~~G 198 (444)
-..+.++..+ ...++.+|+.+ .+.+.-
T Consensus 60 ~~s~~~~~~~-~~~g~~VIDlSadfRl~~ 87 (310)
T TIGR01851 60 DAAREAVSLV-DNPNTCIIDASTAYRTAD 87 (310)
T ss_pred HHHHHHHHHH-HhCCCEEEECChHHhCCC
Confidence 8777766554 56788899865 344443
No 455
>PRK07856 short chain dehydrogenase; Provisional
Probab=89.11 E-value=1.3 Score=42.04 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=29.7
Q ss_pred hhhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+++++++|.| .||+|..+++.|+..|. ++.++|.+
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~ 39 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRR 39 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 36788999998 56799999999999997 67777654
No 456
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=89.11 E-value=1 Score=44.92 Aligned_cols=87 Identities=11% Similarity=0.136 Sum_probs=50.7
Q ss_pred cCcEEEECCCccHHHHHHHHHHc-CCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCCh
Q 013384 93 KSSILVIGAGGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDNA 171 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~~-Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~~ 171 (444)
.-||.|||+|.+|..++..|... ++.-+.++|.+..+ .+.. .+.+ + ...+..+++.+.|+|+.|+.+.
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~--~~~~---~~~v--~----~~~d~~e~l~~iDVViIctPs~ 71 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAE--TLDT---ETPV--Y----AVADDEKHLDDVDVLILCMGSA 71 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHH--HHhh---cCCc--c----ccCCHHHhccCCCEEEEcCCCc
Confidence 46899999999999999999765 66666677776311 1111 1111 0 1122334456778887776542
Q ss_pred HhHHHHHHHHHHcCCcEEEE
Q 013384 172 PSRYMISDCCVVLGKPLVSG 191 (444)
Q Consensus 172 ~~r~~i~~~~~~~~~p~i~~ 191 (444)
+.......+.+.++.+|+.
T Consensus 72 -th~~~~~~~L~aG~NVV~s 90 (324)
T TIGR01921 72 -TDIPEQAPYFAQFANTVDS 90 (324)
T ss_pred -cCHHHHHHHHHcCCCEEEC
Confidence 2233333445566666654
No 457
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=89.07 E-value=1.1 Score=45.81 Aligned_cols=106 Identities=15% Similarity=0.210 Sum_probs=56.1
Q ss_pred cCHHHHHHHHh---cCCCcEEEEecCcccccccCCCCceecCchhhhhhhhhhHHHhh----hhh-hhcCCCCCCCCeEE
Q 013384 328 ISSKEYKEKVV---NGEAHILVDVRPAHHFRIVSLPNSINIPLSDLESRLPEISSAMK----EKE-EHRGSNASSGSNLY 399 (444)
Q Consensus 328 Is~~el~~~l~---~~~~~~lIDVR~~~ef~~ghIpgAiniP~~~l~~~~~~l~~~~~----~~~-~~~~~~~~~~~~Iv 399 (444)
|++-|+.+.-+ .+-++.+||+||.++|+.||+-.|.|+.-.-+.+...++...++ ... ..+......+..+-
T Consensus 309 isv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlstaFhlDc~lmlqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlc 388 (669)
T KOG3636|consen 309 ISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDCVLMLQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLC 388 (669)
T ss_pred hhHHHhhcccccccCceEEEEEeccchhhcccccchhhhcccHHHHhcCHHHHHHHHHHHHHHHHHhhhccccCCcceEE
Confidence 55555544221 12357799999999999999999999876444332111111111 110 00111111223433
Q ss_pred EEcCCChh-----HHHHHHHHHHcCCCCEEEccccHHHHh
Q 013384 400 VVCRRGND-----SQRAVQALHKLGFTSARDIIGGLESWA 434 (444)
Q Consensus 400 v~C~~G~~-----S~~aa~~L~~~G~~~v~~l~GG~~aW~ 434 (444)
++ .+|.. --.+...+.+.+-..|..+.||+.+..
T Consensus 389 fm-GsGr~EED~YmnMviA~FlQKnk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 389 FM-GSGRDEEDNYMNMVIAMFLQKNKLYVSFVQGGYKKLH 427 (669)
T ss_pred Ee-ccCcchHHHHHHHHHHHHHhcCceEEEEecchHHHHH
Confidence 33 44432 223333444455556899999998765
No 458
>PRK12744 short chain dehydrogenase; Provisional
Probab=89.07 E-value=0.93 Score=43.11 Aligned_cols=33 Identities=33% Similarity=0.384 Sum_probs=26.8
Q ss_pred hhhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEE
Q 013384 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGI 122 (444)
Q Consensus 90 ~L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~l 122 (444)
.|++++|+|.| .|++|..+++.|+..|...+.+
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 46778999998 6679999999999999754433
No 459
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=88.96 E-value=0.89 Score=43.42 Aligned_cols=34 Identities=32% Similarity=0.543 Sum_probs=28.4
Q ss_pred hhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeC
Q 013384 91 LLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDH 125 (444)
Q Consensus 91 L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~ 125 (444)
|++++|+|.|+ ||+|..+++.|+..|. ++.++|.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r 37 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDK 37 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 67889999985 6799999999999997 5667654
No 460
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=88.96 E-value=1.9 Score=40.39 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=56.6
Q ss_pred EEEECC-CccHHHHHHHHHHcCCCcEEEeeCCccccccccc--ccCcceEEEEeecCC-cccHHhhcCCCcEEEEccCCh
Q 013384 96 ILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--INSTVHIIEHREALR-TSNALEILSQYEIVVDATDNA 171 (444)
Q Consensus 96 VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R--lnp~~~v~~~~~~~~-~~~~~~~~~~~DvVi~~~D~~ 171 (444)
|+|+|+ |.+|..++..|...|.. +.++=.+. .+.... ....+++. ...+. .+.....|+++|.||.++...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l~R~~--~~~~~~~l~~~g~~vv--~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS-VRALVRDP--SSDRAQQLQALGAEVV--EADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC-EEEEESSS--HHHHHHHHHHTTTEEE--ES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCC-cEEEEecc--chhhhhhhhcccceEe--ecccCCHHHHHHHHcCCceEEeecCcc
Confidence 789996 77999999999997754 44432211 000111 22344433 33333 455677789999999998832
Q ss_pred -----HhHHHHHHHHHHcCCcEEEE
Q 013384 172 -----PSRYMISDCCVVLGKPLVSG 191 (444)
Q Consensus 172 -----~~r~~i~~~~~~~~~p~i~~ 191 (444)
.....+-++|.+.|++.+--
T Consensus 76 ~~~~~~~~~~li~Aa~~agVk~~v~ 100 (233)
T PF05368_consen 76 HPSELEQQKNLIDAAKAAGVKHFVP 100 (233)
T ss_dssp CCCHHHHHHHHHHHHHHHT-SEEEE
T ss_pred hhhhhhhhhhHHHhhhccccceEEE
Confidence 23456788888988876643
No 461
>PRK12828 short chain dehydrogenase; Provisional
Probab=88.94 E-value=0.73 Score=42.89 Aligned_cols=37 Identities=27% Similarity=0.545 Sum_probs=30.7
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
+|++++|+|.|+ |++|..+++.|+..|.. +.++|.+.
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~-v~~~~r~~ 41 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGAR-VALIGRGA 41 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCe-EEEEeCCh
Confidence 467889999985 78999999999999974 78877643
No 462
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=88.94 E-value=1.2 Score=46.52 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=64.2
Q ss_pred cEEEECCCcc-HHHHHHHHHH----cCCCcEEEeeCCccccccccc--------ccCcceEEEEeecCCcccHHhhcCCC
Q 013384 95 SILVIGAGGL-GSPALLYLAA----CGVGRLGIVDHDVVELNNMHR--------INSTVHIIEHREALRTSNALEILSQY 161 (444)
Q Consensus 95 ~VlIvG~Ggl-Gs~ia~~La~----~Gvg~i~lvD~D~V~~sNl~R--------lnp~~~v~~~~~~~~~~~~~~~~~~~ 161 (444)
||+|||+|+. +-.+...|+. .++++|.|+|-|.-...-+.+ .++.++|+... +..+.+.++
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Tt------dr~eAl~gA 75 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTT------DPEEAFTDA 75 (437)
T ss_pred eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEEC------CHHHHhCCC
Confidence 7999999996 3455666653 457899999987732222222 34455555543 346678999
Q ss_pred cEEEEcc--CChHhHHHHHHHHHHcCCcEEEEcccCCcce
Q 013384 162 EIVVDAT--DNAPSRYMISDCCVVLGKPLVSGAALGLEGQ 199 (444)
Q Consensus 162 DvVi~~~--D~~~~r~~i~~~~~~~~~p~i~~~~~g~~G~ 199 (444)
|+||.+. ...+.|..--+...++|+ +-..+.|..|.
T Consensus 76 DfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG~ 113 (437)
T cd05298 76 DFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGGF 113 (437)
T ss_pred CEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHHH
Confidence 9999764 344677777788899996 43355566653
No 463
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=88.93 E-value=1.2 Score=40.93 Aligned_cols=95 Identities=20% Similarity=0.248 Sum_probs=61.7
Q ss_pred HhhhcCcEEEECCCc-cHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCC-----cccHHhhcCCCc
Q 013384 89 SNLLKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALR-----TSNALEILSQYE 162 (444)
Q Consensus 89 ~~L~~~~VlIvG~Gg-lGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~-----~~~~~~~~~~~D 162 (444)
..|++++|+|||-+. +|.+++..|...| ..++++|.+.+-. .+ +.......-+ +.+..+.++++|
T Consensus 58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~~-AtVti~~~~~~~~------~~--~~~~~~hs~t~~~~~~~~l~~~~~~AD 128 (197)
T cd01079 58 NRLYGKTITIINRSEVVGRPLAALLANDG-ARVYSVDINGIQV------FT--RGESIRHEKHHVTDEEAMTLDCLSQSD 128 (197)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCC-CEEEEEecCcccc------cc--cccccccccccccchhhHHHHHhhhCC
Confidence 368999999999776 6999999999988 4777877544321 00 0000000011 112567889999
Q ss_pred EEEEccCChHhHHHHHHHHHHcCCcEEEEccc
Q 013384 163 IVVDATDNAPSRYMISDCCVVLGKPLVSGAAL 194 (444)
Q Consensus 163 vVi~~~D~~~~r~~i~~~~~~~~~p~i~~~~~ 194 (444)
+||.|+..+..+ +..--.+-|.-+|+.|..
T Consensus 129 IVIsAvG~~~~~--i~~d~ik~GavVIDVGi~ 158 (197)
T cd01079 129 VVITGVPSPNYK--VPTELLKDGAICINFASI 158 (197)
T ss_pred EEEEccCCCCCc--cCHHHcCCCcEEEEcCCC
Confidence 999999887653 333445566778887744
No 464
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.91 E-value=0.31 Score=44.68 Aligned_cols=76 Identities=25% Similarity=0.254 Sum_probs=41.9
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-ccCcce--EEEE------eecCC-cccHHhhcCCCcEE
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-INSTVH--IIEH------REALR-TSNALEILSQYEIV 164 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-lnp~~~--v~~~------~~~~~-~~~~~~~~~~~DvV 164 (444)
+|.|+|+|=+|.+.|..||..|. ++.-+|.|.-....+++ ..|..+ .... ..++. ..+..+.+.++|++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 79999999999999999999995 77778887766666666 111100 0000 00111 12334446789999
Q ss_pred EEccCCh
Q 013384 165 VDATDNA 171 (444)
Q Consensus 165 i~~~D~~ 171 (444)
|-|+.+|
T Consensus 81 ~I~VpTP 87 (185)
T PF03721_consen 81 FICVPTP 87 (185)
T ss_dssp EE----E
T ss_pred EEecCCC
Confidence 9998766
No 465
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=88.79 E-value=1.6 Score=43.07 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=28.8
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
.+|.|||+|-.|..++..|++.|. .++++|.+.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 379999999999999999999995 788887653
No 466
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=88.76 E-value=0.91 Score=42.90 Aligned_cols=34 Identities=38% Similarity=0.455 Sum_probs=28.2
Q ss_pred hhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeC
Q 013384 91 LLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDH 125 (444)
Q Consensus 91 L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~ 125 (444)
+++++|+|.| .|++|..+++.|+..|. ++.+++.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r 36 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADL 36 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 4678899999 58899999999999986 5666654
No 467
>PRK06398 aldose dehydrogenase; Validated
Probab=88.76 E-value=1.6 Score=41.76 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=29.4
Q ss_pred hhhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.|++++|+|.| .||+|..+++.|+..|. ++.+++.+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~ 39 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIK 39 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence 46788999998 56899999999999996 66666543
No 468
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=88.73 E-value=0.99 Score=47.53 Aligned_cols=100 Identities=18% Similarity=0.232 Sum_probs=57.1
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccc----------c----------c-cCcceEEEEee-cCCc-
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMH----------R----------I-NSTVHIIEHRE-ALRT- 151 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~----------R----------l-np~~~v~~~~~-~~~~- 151 (444)
.|.|||+|..|..+|.+|+..|. ++.++|.+.-....+. - + .|.+-+...+. ....
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~ 79 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDA 79 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHH
Confidence 48899999999999999999997 6888876432211111 0 0 12222222111 0011
Q ss_pred --ccHHhhcCCCcEEEEccC-ChHhHHHHHHHHHHcCCcEEEEcccC
Q 013384 152 --SNALEILSQYEIVVDATD-NAPSRYMISDCCVVLGKPLVSGAALG 195 (444)
Q Consensus 152 --~~~~~~~~~~DvVi~~~D-~~~~r~~i~~~~~~~~~p~i~~~~~g 195 (444)
+.....+..=|+|||++- .+..-....+.+...++.+|++++.|
T Consensus 80 Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsG 126 (467)
T TIGR00873 80 VINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSG 126 (467)
T ss_pred HHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCC
Confidence 112223445578888874 33332333455667788888877655
No 469
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=88.71 E-value=2.1 Score=41.20 Aligned_cols=90 Identities=22% Similarity=0.271 Sum_probs=63.5
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc--ccCc-ceEEEEeecC-CcccHHhhc--CCCcEEEEc
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR--INST-VHIIEHREAL-RTSNALEIL--SQYEIVVDA 167 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R--lnp~-~~v~~~~~~~-~~~~~~~~~--~~~DvVi~~ 167 (444)
.+|+|+|--+=|..++..|...|. +.+ . | .+.+.. .+|. ..+..+...+ +.+...+++ .+.++|||+
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~--v~~-s---v-~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDA 73 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY--VIV-S---V-ATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDA 73 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC--EEE-E---E-EhhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEEC
Confidence 478999877789999999999997 221 0 1 111222 3333 3345566667 556666777 578999999
Q ss_pred cCChHhH--HHHHHHHHHcCCcEEE
Q 013384 168 TDNAPSR--YMISDCCVVLGKPLVS 190 (444)
Q Consensus 168 ~D~~~~r--~~i~~~~~~~~~p~i~ 190 (444)
|-.++.. .-+.++|.+.++|++-
T Consensus 74 THPfA~~is~na~~a~~~~~ipylR 98 (249)
T PF02571_consen 74 THPFAAEISQNAIEACRELGIPYLR 98 (249)
T ss_pred CCchHHHHHHHHHHHHhhcCcceEE
Confidence 9999754 5778899999999984
No 470
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.70 E-value=1.4 Score=43.08 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=58.0
Q ss_pred HHhhhcCcEEEECCC-ccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEE
Q 013384 88 QSNLLKSSILVIGAG-GLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVD 166 (444)
Q Consensus 88 q~~L~~~~VlIvG~G-glGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~ 166 (444)
+..|++++|+|||-+ -+|.+++..|...|. .+++.+ .. ..+..+..+.+|+||.
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~A-tVti~h-----------------------s~-T~~l~~~~~~ADIvV~ 206 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNANA-TVDICH-----------------------IF-TKDLKAHTKKADIVIV 206 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCC-EEEEeC-----------------------CC-CcCHHHHHhhCCEEEE
Confidence 346899999999988 589999999988774 444421 11 2455677899999999
Q ss_pred ccCChHhHHHHHHHHHHcCCcEEEEcccC
Q 013384 167 ATDNAPSRYMISDCCVVLGKPLVSGAALG 195 (444)
Q Consensus 167 ~~D~~~~r~~i~~~~~~~~~p~i~~~~~g 195 (444)
|+..+.. +..-..+.|.-+|++|...
T Consensus 207 AvGkp~~---i~~~~vk~gavvIDvGin~ 232 (281)
T PRK14183 207 GVGKPNL---ITEDMVKEGAIVIDIGINR 232 (281)
T ss_pred ecCcccc---cCHHHcCCCcEEEEeeccc
Confidence 9987653 3344456677788888654
No 471
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.69 E-value=0.9 Score=49.84 Aligned_cols=63 Identities=24% Similarity=0.265 Sum_probs=43.0
Q ss_pred CCCCHHHHhhhhccccCC-CCCHHH-HHhhhcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 64 YGLSPDMIYRYSRHLLLP-SFGVEG-QSNLLKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 64 ~~l~~~~~~ry~Rq~~l~-~~g~~~-q~~L~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
.+++-..++||--..... .|.... ...-++++|+|||.|..|-.+|..|++.|. +++|+|...
T Consensus 279 ~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~ 343 (639)
T PRK12809 279 GAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHP 343 (639)
T ss_pred CCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence 467777788874332110 121111 112358999999999999999999999998 689988654
No 472
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.68 E-value=0.5 Score=52.47 Aligned_cols=89 Identities=12% Similarity=0.151 Sum_probs=51.8
Q ss_pred CcEEEECCCccHHHHHHHHH-HcCCCcEEEeeCCccccccc----cc----------ccCcceEEEEeecCCcccHHhhc
Q 013384 94 SSILVIGAGGLGSPALLYLA-ACGVGRLGIVDHDVVELNNM----HR----------INSTVHIIEHREALRTSNALEIL 158 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La-~~Gvg~i~lvD~D~V~~sNl----~R----------lnp~~~v~~~~~~~~~~~~~~~~ 158 (444)
++|.|||+|..|+.+|..++ .+|+ .++++|.+.-...+. .+ +.+.. .......+......+-+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~ 387 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSE-RDKQMALISGTTDYRGF 387 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHhcEEEeCChHHh
Confidence 67999999999999999999 8896 888888764322211 00 11100 00000011111112345
Q ss_pred CCCcEEEEccC-ChHhHHHHHHHHHHc
Q 013384 159 SQYEIVVDATD-NAPSRYMISDCCVVL 184 (444)
Q Consensus 159 ~~~DvVi~~~D-~~~~r~~i~~~~~~~ 184 (444)
+++|+||.|+- +.+.+..+.......
T Consensus 388 ~~aDlViEav~E~~~~K~~v~~~le~~ 414 (708)
T PRK11154 388 KHADVVIEAVFEDLALKQQMVAEVEQN 414 (708)
T ss_pred ccCCEEeecccccHHHHHHHHHHHHhh
Confidence 89999999964 556665555444333
No 473
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=88.66 E-value=1.1 Score=44.79 Aligned_cols=93 Identities=12% Similarity=0.235 Sum_probs=51.6
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhc--CCCc-EEEEcc
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEIL--SQYE-IVVDAT 168 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~--~~~D-vVi~~~ 168 (444)
.+.+|+|.|+|++|..++..+...|+..+..+|...-..+-+..+.....+... ....+...++. ..+| +||||+
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~--~~~~~~~~~~~~~~~~d~~v~d~~ 237 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSR--EMSAPQIQSVLRELRFDQLILETA 237 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCc--ccCHHHHHHHhcCCCCCeEEEECC
Confidence 467999999999999999999999998777776432211111101111001100 00111222222 2467 999999
Q ss_pred CChHhHHHHHHHHHHcCC
Q 013384 169 DNAPSRYMISDCCVVLGK 186 (444)
Q Consensus 169 D~~~~r~~i~~~~~~~~~ 186 (444)
..........+.....|.
T Consensus 238 G~~~~~~~~~~~l~~~G~ 255 (347)
T PRK10309 238 GVPQTVELAIEIAGPRAQ 255 (347)
T ss_pred CCHHHHHHHHHHhhcCCE
Confidence 986544333344444444
No 474
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=88.62 E-value=0.54 Score=46.07 Aligned_cols=81 Identities=21% Similarity=0.337 Sum_probs=46.9
Q ss_pred cEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcC--CCcEEEEccC--
Q 013384 95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILS--QYEIVVDATD-- 169 (444)
Q Consensus 95 ~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~--~~DvVi~~~D-- 169 (444)
||+|+|+ |-+|+.+...|...|..-+.+ +...++..| .+...+++. ..|+||.|..
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~v~~~-~r~~~dl~d------------------~~~~~~~~~~~~pd~Vin~aa~~ 62 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYEVIAT-SRSDLDLTD------------------PEAVAKLLEAFKPDVVINCAAYT 62 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEEEEEE-STTCS-TTS------------------HHHHHHHHHHH--SEEEE-----
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCEEEEe-CchhcCCCC------------------HHHHHHHHHHhCCCeEeccceee
Confidence 7999996 558999999998876432322 333222211 122334443 4799998863
Q ss_pred -------ChHhH--------HHHHHHHHHcCCcEEEEccc
Q 013384 170 -------NAPSR--------YMISDCCVVLGKPLVSGAAL 194 (444)
Q Consensus 170 -------~~~~r--------~~i~~~~~~~~~p~i~~~~~ 194 (444)
++... ..|.++|...+.++|+.++.
T Consensus 63 ~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 63 NVDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTD 102 (286)
T ss_dssp -HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEG
T ss_pred cHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeecc
Confidence 22222 35668888999999987754
No 475
>PRK08226 short chain dehydrogenase; Provisional
Probab=88.62 E-value=0.78 Score=43.69 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=29.9
Q ss_pred hhhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
++++++++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~ 39 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGA-NLILLDIS 39 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCC
Confidence 56788999998 67799999999999997 47777653
No 476
>PRK05717 oxidoreductase; Validated
Probab=88.59 E-value=0.94 Score=43.02 Aligned_cols=36 Identities=31% Similarity=0.348 Sum_probs=29.6
Q ss_pred hhhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+++++|+|.| .|++|..+++.|+..|. ++.++|.+
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~ 43 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLD 43 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCC
Confidence 45678899998 57899999999999995 67777643
No 477
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=88.56 E-value=0.97 Score=42.86 Aligned_cols=36 Identities=33% Similarity=0.380 Sum_probs=29.2
Q ss_pred hhhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.|.+++++|.| .|++|..+++.|+..|. ++.++|.+
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~ 42 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDIT 42 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCC
Confidence 36778899998 57799999999999996 66676643
No 478
>PRK07831 short chain dehydrogenase; Provisional
Probab=88.53 E-value=1.1 Score=42.67 Aligned_cols=35 Identities=31% Similarity=0.339 Sum_probs=28.7
Q ss_pred hhhcCcEEEECC-C-ccHHHHHHHHHHcCCCcEEEeeC
Q 013384 90 NLLKSSILVIGA-G-GLGSPALLYLAACGVGRLGIVDH 125 (444)
Q Consensus 90 ~L~~~~VlIvG~-G-glGs~ia~~La~~Gvg~i~lvD~ 125 (444)
.+++++|+|.|+ | |+|..+++.|+..|.. +.++|.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~ 50 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDI 50 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeC
Confidence 345688999996 6 7999999999999974 777664
No 479
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.53 E-value=1 Score=45.16 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=45.7
Q ss_pred CcEEEECC-CccHHHHHHHHHHcCCC------cEEEeeCCccc--cccccc-c----cCcceEEEEeecCCcccHHhhcC
Q 013384 94 SSILVIGA-GGLGSPALLYLAACGVG------RLGIVDHDVVE--LNNMHR-I----NSTVHIIEHREALRTSNALEILS 159 (444)
Q Consensus 94 ~~VlIvG~-GglGs~ia~~La~~Gvg------~i~lvD~D~V~--~sNl~R-l----np~~~v~~~~~~~~~~~~~~~~~ 159 (444)
.+|+|+|+ |.+|+.++..|+..|+- ++.++|-..-. ...... + .|... +... ..+..+.++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~----~~~~-~~~~~~~l~ 77 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLK----SVVA-TTDPEEAFK 77 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccC----Ccee-cCCHHHHhC
Confidence 47999998 99999999999998874 79999874321 111111 0 01110 1111 123346678
Q ss_pred CCcEEEEccCCh
Q 013384 160 QYEIVVDATDNA 171 (444)
Q Consensus 160 ~~DvVi~~~D~~ 171 (444)
++|+||-+...+
T Consensus 78 ~aDiVI~tAG~~ 89 (325)
T cd01336 78 DVDVAILVGAMP 89 (325)
T ss_pred CCCEEEEeCCcC
Confidence 999999776543
No 480
>PLN02702 L-idonate 5-dehydrogenase
Probab=88.52 E-value=1.5 Score=44.20 Aligned_cols=35 Identities=40% Similarity=0.600 Sum_probs=30.9
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
.+.+|+|.|+|++|..++..+...|+..+.++|.+
T Consensus 181 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~ 215 (364)
T PLN02702 181 PETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVD 215 (364)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46789999999999999999999999888888865
No 481
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=88.46 E-value=0.24 Score=52.23 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=49.6
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCC-cEEEeeCCccccccccc-c----cCcce-E--EEEeecCC-cccHHhhcCCCcE
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVG-RLGIVDHDVVELNNMHR-I----NSTVH-I--IEHREALR-TSNALEILSQYEI 163 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg-~i~lvD~D~V~~sNl~R-l----np~~~-v--~~~~~~~~-~~~~~~~~~~~Dv 163 (444)
.+|+|+|+|-+|.++|..|+..|.| ++..+|.|.-....++. . .|... + ......+. ..+..+.++++|+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 3699999999999999999999875 47778876655554444 1 11100 0 00001111 1223445688999
Q ss_pred EEEccCChH
Q 013384 164 VVDATDNAP 172 (444)
Q Consensus 164 Vi~~~D~~~ 172 (444)
+|-|+.+|.
T Consensus 82 i~I~V~TP~ 90 (473)
T PLN02353 82 VFVSVNTPT 90 (473)
T ss_pred EEEEeCCCC
Confidence 999987653
No 482
>PRK07890 short chain dehydrogenase; Provisional
Probab=88.46 E-value=0.92 Score=42.96 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=29.3
Q ss_pred hhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 91 LLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 91 L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
|.+++|+|.| .|++|..+++.|+.-|. ++.++|.+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~ 38 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAART 38 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence 5678999998 47899999999999997 67777643
No 483
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=88.46 E-value=0.93 Score=42.65 Aligned_cols=36 Identities=25% Similarity=0.497 Sum_probs=29.4
Q ss_pred hhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 91 LLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 91 L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
|++++|+|.| .|++|..+++.|+..|. ++.++|.+.
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~ 37 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNR 37 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCH
Confidence 5688999999 57799999999999987 577776543
No 484
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=88.44 E-value=2.6 Score=35.38 Aligned_cols=91 Identities=14% Similarity=0.112 Sum_probs=51.9
Q ss_pred cEEEECC-CccHHHHHHHHHHc-CCCcEEEeeCCccccccccc----ccCcceEEEEeecCCcccHHhhcCCCcEEEEcc
Q 013384 95 SILVIGA-GGLGSPALLYLAAC-GVGRLGIVDHDVVELNNMHR----INSTVHIIEHREALRTSNALEILSQYEIVVDAT 168 (444)
Q Consensus 95 ~VlIvG~-GglGs~ia~~La~~-Gvg~i~lvD~D~V~~sNl~R----lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~ 168 (444)
+|.|+|+ |-+|..++..|... ++.-..+++.+. +..+ .++.+.-... ..++.++.. ..++|+||.|+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~DvV~~~~ 73 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASAR----SAGKRVSEAGPHLKGEVV-LELEPEDFE--ELAVDIVFLAL 73 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechh----hcCcCHHHHCcccccccc-cccccCChh--hcCCCEEEEcC
Confidence 6899997 55888999999885 665444545431 1111 3332211110 111212221 24799999999
Q ss_pred CChHhHHHHH--HHHHHcCCcEEEEc
Q 013384 169 DNAPSRYMIS--DCCVVLGKPLVSGA 192 (444)
Q Consensus 169 D~~~~r~~i~--~~~~~~~~p~i~~~ 192 (444)
.+......+. ..+...|+.+|+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~g~~viD~s 99 (122)
T smart00859 74 PHGVSKEIAPLLPKAAEAGVKVIDLS 99 (122)
T ss_pred CcHHHHHHHHHHHhhhcCCCEEEECC
Confidence 8876555332 22346788888865
No 485
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=88.39 E-value=2.3 Score=42.57 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=45.0
Q ss_pred cEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCccccccccc---ccCcceEEEEeecCCc-ccHHhhcC--CCcEEEEc
Q 013384 95 SILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR---INSTVHIIEHREALRT-SNALEILS--QYEIVVDA 167 (444)
Q Consensus 95 ~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R---lnp~~~v~~~~~~~~~-~~~~~~~~--~~DvVi~~ 167 (444)
+|+|.|+ |.+|+.+++.|...|...+..+|.... ..+..+ +.+...++.+...+.+ +....+++ +.|+||.+
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTY-AGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMHL 80 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCc-cchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEEC
Confidence 6899985 779999999999998765655554221 112111 2222334445555553 33445554 47999988
Q ss_pred cC
Q 013384 168 TD 169 (444)
Q Consensus 168 ~D 169 (444)
..
T Consensus 81 A~ 82 (352)
T PRK10084 81 AA 82 (352)
T ss_pred Cc
Confidence 64
No 486
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=88.39 E-value=1.1 Score=42.72 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=29.2
Q ss_pred hhhcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 90 NLLKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 90 ~L~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
+|++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~ 48 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG 48 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 578899999995 6799999999999997 45565543
No 487
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=88.35 E-value=1.4 Score=44.53 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=44.0
Q ss_pred hcCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccccc-ccCcceEEEEeecCCcccHHhhcCCCcEEEEccCC
Q 013384 92 LKSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHR-INSTVHIIEHREALRTSNALEILSQYEIVVDATDN 170 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~R-lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~ 170 (444)
.+.+|+|.|+|++|..++..+...|+. +.++|...-....+.+ +.-. ..++.. ..+...+....+|+||||+..
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~-vi~~~~~~~~~~~~~~~~Ga~---~vi~~~-~~~~~~~~~~~~D~vid~~g~ 257 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISSSSNKEDEAINRLGAD---SFLVST-DPEKMKAAIGTMDYIIDTVSA 257 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCcchhhhHHHhCCCc---EEEcCC-CHHHHHhhcCCCCEEEECCCC
Confidence 467899999999999999998899985 5555543211111111 1111 011100 011222333468999999987
Q ss_pred hHh
Q 013384 171 APS 173 (444)
Q Consensus 171 ~~~ 173 (444)
..+
T Consensus 258 ~~~ 260 (360)
T PLN02586 258 VHA 260 (360)
T ss_pred HHH
Confidence 543
No 488
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.34 E-value=2.3 Score=45.24 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=26.9
Q ss_pred cCcEEEECCCccH-HHHHHHHHH----cC-CCcEEEeeCCcccc
Q 013384 93 KSSILVIGAGGLG-SPALLYLAA----CG-VGRLGIVDHDVVEL 130 (444)
Q Consensus 93 ~~~VlIvG~GglG-s~ia~~La~----~G-vg~i~lvD~D~V~~ 130 (444)
+..|+|+|.+|+| +.++..|+. -+ -+++.++|.|....
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi 393 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV 393 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence 5678899999999 445555654 22 25799999987554
No 489
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=88.33 E-value=0.98 Score=42.88 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=28.4
Q ss_pred hhhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeC
Q 013384 90 NLLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDH 125 (444)
Q Consensus 90 ~L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~ 125 (444)
+|.+++|+|.| .|++|..+++.|+..|. ++.++|.
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r 43 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDI 43 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 46789999998 56799999999999997 4555553
No 490
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=88.29 E-value=1.5 Score=45.58 Aligned_cols=87 Identities=23% Similarity=0.341 Sum_probs=50.8
Q ss_pred cEEEECCCccHHHHHHHHHHcCCCcEEEeeCCccccccc-cc-c--cCcceEEEEeecCCcccHHhhcCCCcEEEEccCC
Q 013384 95 SILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNM-HR-I--NSTVHIIEHREALRTSNALEILSQYEIVVDATDN 170 (444)
Q Consensus 95 ~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl-~R-l--np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~ 170 (444)
+|+|+|+|+.|..+|+.|...|. +++..|...-+...- .+ + ...+.+ +.. .+ .+.+.++|+||-...=
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~-~V~~sD~~~~~~~~~~~~~~~~~~gi~~--~~g----~~-~~~~~~~d~vv~sp~i 72 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGA-EVTVTDLKPNEELEPSMGQLRLNEGSVL--HTG----LH-LEDLNNADLVVKSPGI 72 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCC-EEEEEeCCCCccchhHHHHHhhccCcEE--Eec----Cc-hHHhccCCEEEECCCC
Confidence 58999999999999999999997 688888644322110 00 1 112322 211 11 2345789999866532
Q ss_pred hHhHHHHHHHHHHcCCcEEE
Q 013384 171 APSRYMISDCCVVLGKPLVS 190 (444)
Q Consensus 171 ~~~r~~i~~~~~~~~~p~i~ 190 (444)
+... -.-..+++.++|+++
T Consensus 73 ~~~~-p~~~~a~~~~i~i~~ 91 (433)
T TIGR01087 73 PPDH-PLVQAAAKRGIPVVG 91 (433)
T ss_pred CCCC-HHHHHHHHCCCcEEE
Confidence 2221 122344566666664
No 491
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.29 E-value=0.53 Score=45.92 Aligned_cols=34 Identities=32% Similarity=0.365 Sum_probs=30.1
Q ss_pred CcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCcc
Q 013384 94 SSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVV 128 (444)
Q Consensus 94 ~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~V 128 (444)
++|.|||+|-+|+.++..|+..|. +++++|.+.-
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHH
Confidence 479999999999999999999997 8899986543
No 492
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=88.27 E-value=2.2 Score=43.70 Aligned_cols=98 Identities=16% Similarity=0.127 Sum_probs=59.1
Q ss_pred hcCcEEEECC-CccHHHHHHHHHHcCCCcEEEeeCCcccccccccccCcceEEEEeecCCcccHHhhcCCCcEEEEccCC
Q 013384 92 LKSSILVIGA-GGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRINSTVHIIEHREALRTSNALEILSQYEIVVDATDN 170 (444)
Q Consensus 92 ~~~~VlIvG~-GglGs~ia~~La~~Gvg~i~lvD~D~V~~sNl~Rlnp~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~D~ 170 (444)
...+|+|+|+ |.+|.++++.|...-.-+|+.+-.+.-.-.-+.-.+|++..... ..+..-...+ ++++|+||.|+.+
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~-~~~~~~~~~~-~~~~DvVf~Alp~ 114 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDL-PNLVAVKDAD-FSDVDAVFCCLPH 114 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccc-cceecCCHHH-hcCCCEEEEcCCH
Confidence 4458999997 55899999999988666788875432111111102232211100 0011111122 4789999999998
Q ss_pred hHhHHHHHHHHHHcCCcEEEEcc
Q 013384 171 APSRYMISDCCVVLGKPLVSGAA 193 (444)
Q Consensus 171 ~~~r~~i~~~~~~~~~p~i~~~~ 193 (444)
-..+.++..+ ..++++|+.++
T Consensus 115 ~~s~~i~~~~--~~g~~VIDlSs 135 (381)
T PLN02968 115 GTTQEIIKAL--PKDLKIVDLSA 135 (381)
T ss_pred HHHHHHHHHH--hCCCEEEEcCc
Confidence 7777777764 46788998653
No 493
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=88.26 E-value=0.52 Score=48.82 Aligned_cols=33 Identities=36% Similarity=0.409 Sum_probs=29.0
Q ss_pred cCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
..+|+|||+|-+|+++|..|++.|+ +++|+|..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl-~V~LiE~r 34 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV-PVELYEMR 34 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEEcc
Confidence 3579999999999999999999997 68888843
No 494
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=88.26 E-value=1.7 Score=42.38 Aligned_cols=101 Identities=15% Similarity=0.223 Sum_probs=59.0
Q ss_pred hcCcEEEECCCc-cHHHHHHHHHHcCCCcEEEeeCCccc-cccccc--ccCcceEEEEeecCCcccHHhhcCCCcEEE--
Q 013384 92 LKSSILVIGAGG-LGSPALLYLAACGVGRLGIVDHDVVE-LNNMHR--INSTVHIIEHREALRTSNALEILSQYEIVV-- 165 (444)
Q Consensus 92 ~~~~VlIvG~Gg-lGs~ia~~La~~Gvg~i~lvD~D~V~-~sNl~R--lnp~~~v~~~~~~~~~~~~~~~~~~~DvVi-- 165 (444)
.+.+|+|.|+|| +||.++.-|..-| ..+..+|.-.-. ..|+-- -+|..++..++.-. .++...|.|+
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~eg-h~VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv~~------pl~~evD~IyhL 98 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEG-HEVIALDNYFTGRKENLEHWIGHPNFELIRHDVVE------PLLKEVDQIYHL 98 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcC-CeEEEEecccccchhhcchhccCcceeEEEeechh------HHHHHhhhhhhh
Confidence 348999999777 8999999999999 677777753322 233332 45555555554321 1222222222
Q ss_pred -----------EccCChH----hHHHHHHHHHHcCCcEEEEcccCCcce
Q 013384 166 -----------DATDNAP----SRYMISDCCVVLGKPLVSGAALGLEGQ 199 (444)
Q Consensus 166 -----------~~~D~~~----~r~~i~~~~~~~~~p~i~~~~~g~~G~ 199 (444)
.-.+... .-.-+--.|.+.++.++.+++...+|.
T Consensus 99 Aapasp~~y~~npvktIktN~igtln~lglakrv~aR~l~aSTseVYgd 147 (350)
T KOG1429|consen 99 AAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVGARFLLASTSEVYGD 147 (350)
T ss_pred ccCCCCcccccCccceeeecchhhHHHHHHHHHhCceEEEeecccccCC
Confidence 1111111 112334467778888998888777774
No 495
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=88.25 E-value=2.6 Score=41.79 Aligned_cols=72 Identities=24% Similarity=0.281 Sum_probs=41.4
Q ss_pred cEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCCcccc-cc---cccccCcceEEEEeecCCcc-cHHhhcC--CCcEEEE
Q 013384 95 SILVIG-AGGLGSPALLYLAACGVGRLGIVDHDVVEL-NN---MHRINSTVHIIEHREALRTS-NALEILS--QYEIVVD 166 (444)
Q Consensus 95 ~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D~V~~-sN---l~Rlnp~~~v~~~~~~~~~~-~~~~~~~--~~DvVi~ 166 (444)
+|+|.| .|.+|..+++.|+..|. +++++|...-.. .. +.+. +..++..+...+... ....++. ++|+||.
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh 79 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGH-DVVILDNLCNSKRSVLPVIERL-GGKHPTFVEGDIRNEALLTEILHDHAIDTVIH 79 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCCC-eEEEEecCCCchHhHHHHHHHh-cCCCceEEEccCCCHHHHHHHHhcCCCCEEEE
Confidence 699999 58899999999999986 566665321111 01 1111 111233333444432 3344454 5899998
Q ss_pred cc
Q 013384 167 AT 168 (444)
Q Consensus 167 ~~ 168 (444)
+.
T Consensus 80 ~a 81 (338)
T PRK10675 80 FA 81 (338)
T ss_pred CC
Confidence 64
No 496
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=88.23 E-value=0.81 Score=47.48 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=62.1
Q ss_pred cEEEECCCccHH-HHHHHHHH----cCCCcEEEeeCCccccccccc-----------ccCcceEEEEeecCCcccHHhhc
Q 013384 95 SILVIGAGGLGS-PALLYLAA----CGVGRLGIVDHDVVELNNMHR-----------INSTVHIIEHREALRTSNALEIL 158 (444)
Q Consensus 95 ~VlIvG~GglGs-~ia~~La~----~Gvg~i~lvD~D~V~~sNl~R-----------lnp~~~v~~~~~~~~~~~~~~~~ 158 (444)
||.|||+|++-+ .+.+.|+. .++++|.|+|-|. +..|.. .++.++++... +..+.+
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~v~~~~~~~~~~~~~~~~v~~t~------d~~~al 73 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEIVGALAKRMVKKAGLPIKVHLTT------DRREAL 73 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHHHHHHHHHHHHhhCCCeEEEEeC------CHHHHh
Confidence 799999999754 55666665 5679999999985 333322 45556655543 346677
Q ss_pred CCCcEEEEccC--ChHhHHHHHHHHHHcCCcEEEEcccCCcc
Q 013384 159 SQYEIVVDATD--NAPSRYMISDCCVVLGKPLVSGAALGLEG 198 (444)
Q Consensus 159 ~~~DvVi~~~D--~~~~r~~i~~~~~~~~~p~i~~~~~g~~G 198 (444)
.++|+||.+.- ..+.|..-.+...++|+- -..+.|..|
T Consensus 74 ~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~--gqET~G~GG 113 (419)
T cd05296 74 EGADFVFTQIRVGGLEARALDERIPLKHGVI--GQETTGAGG 113 (419)
T ss_pred CCCCEEEEEEeeCCcchhhhhhhhHHHcCCc--cccCCCcch
Confidence 89999997753 334565556666777653 244555555
No 497
>PRK05876 short chain dehydrogenase; Provisional
Probab=88.20 E-value=1 Score=43.67 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=29.7
Q ss_pred hhcCcEEEEC-CCccHHHHHHHHHHcCCCcEEEeeCC
Q 013384 91 LLKSSILVIG-AGGLGSPALLYLAACGVGRLGIVDHD 126 (444)
Q Consensus 91 L~~~~VlIvG-~GglGs~ia~~La~~Gvg~i~lvD~D 126 (444)
+++++|+|.| .||+|..+++.|++.|. ++.++|.+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~ 39 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVD 39 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5678899998 67899999999999998 57787765
No 498
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=88.19 E-value=2.1 Score=43.08 Aligned_cols=101 Identities=16% Similarity=0.104 Sum_probs=54.0
Q ss_pred cEEEECCCc-cHHHHHHHHHHcC-CCcEEEeeCCcccccccccccCcceEE-----EEeecCCcccHHhhcCCCcEEEEc
Q 013384 95 SILVIGAGG-LGSPALLYLAACG-VGRLGIVDHDVVELNNMHRINSTVHII-----EHREALRTSNALEILSQYEIVVDA 167 (444)
Q Consensus 95 ~VlIvG~Gg-lGs~ia~~La~~G-vg~i~lvD~D~V~~sNl~Rlnp~~~v~-----~~~~~~~~~~~~~~~~~~DvVi~~ 167 (444)
+|+|+|++| +|.++++.|.... +.-..+++.+.-....+....|...+. .....+...+ .+.+.++|+|+.|
T Consensus 2 kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~DvVf~a 80 (341)
T TIGR00978 2 RVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPE-PVASKDVDIVFSA 80 (341)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCC-HHHhccCCEEEEe
Confidence 799999866 8999999998865 333334354321101111011210000 0000111111 1234789999999
Q ss_pred cCChHhHHHHHHHHHHcCCcEEEEc-ccCCc
Q 013384 168 TDNAPSRYMISDCCVVLGKPLVSGA-ALGLE 197 (444)
Q Consensus 168 ~D~~~~r~~i~~~~~~~~~p~i~~~-~~g~~ 197 (444)
+.+-....+. ..+...|+.+|+.+ .+.+.
T Consensus 81 ~p~~~s~~~~-~~~~~~G~~VIDlsg~fR~~ 110 (341)
T TIGR00978 81 LPSEVAEEVE-PKLAEAGKPVFSNASNHRMD 110 (341)
T ss_pred CCHHHHHHHH-HHHHHCCCEEEECChhhccC
Confidence 9876555444 55667888888743 44443
No 499
>PLN02852 ferredoxin-NADP+ reductase
Probab=88.17 E-value=1.2 Score=47.11 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=29.7
Q ss_pred hcCcEEEECCCccHHHHHHHHHH--cCCCcEEEeeCCc
Q 013384 92 LKSSILVIGAGGLGSPALLYLAA--CGVGRLGIVDHDV 127 (444)
Q Consensus 92 ~~~~VlIvG~GglGs~ia~~La~--~Gvg~i~lvD~D~ 127 (444)
..++|+|||+|..|.++|..|+. .|. +++|+|...
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCC
Confidence 45789999999999999999997 454 799988765
No 500
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.15 E-value=0.56 Score=46.02 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=30.0
Q ss_pred cCcEEEECCCccHHHHHHHHHHcCCCcEEEeeCCc
Q 013384 93 KSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDV 127 (444)
Q Consensus 93 ~~~VlIvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 127 (444)
-++|.|||+|..|+.+|..|+.+|. ++.++|.+.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence 3679999999999999999999996 788998753
Done!