Query 013385
Match_columns 444
No_of_seqs 204 out of 1351
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 03:19:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03388 ascorbase L-ascorbat 100.0 1.1E-83 2.3E-88 664.2 45.9 432 1-432 107-539 (541)
2 PLN02191 L-ascorbate oxidase 100.0 2.7E-82 5.9E-87 654.1 46.0 439 1-440 129-570 (574)
3 PLN02604 oxidoreductase 100.0 4.3E-81 9.2E-86 646.6 46.4 433 1-435 130-565 (566)
4 PLN00044 multi-copper oxidase- 100.0 4.2E-77 9.2E-82 610.6 42.7 397 1-436 134-559 (596)
5 PLN02991 oxidoreductase 100.0 1.2E-76 2.7E-81 604.0 42.8 387 1-436 133-535 (543)
6 PLN02792 oxidoreductase 100.0 2.8E-76 6E-81 602.4 42.3 387 1-436 121-528 (536)
7 PLN02835 oxidoreductase 100.0 5E-76 1.1E-80 602.5 43.1 387 1-436 134-536 (539)
8 PLN02354 copper ion binding / 100.0 9E-75 2E-79 594.0 41.9 392 1-436 132-543 (552)
9 TIGR03389 laccase laccase, pla 100.0 2.2E-74 4.7E-79 595.5 43.8 400 4-431 111-539 (539)
10 PLN02168 copper ion binding / 100.0 1.9E-74 4.1E-79 589.1 42.0 387 1-433 131-543 (545)
11 TIGR03390 ascorbOXfungal L-asc 100.0 1.6E-69 3.5E-74 557.2 41.6 389 1-418 116-533 (538)
12 KOG1263 Multicopper oxidases [ 100.0 6E-69 1.3E-73 544.5 41.1 400 1-436 133-560 (563)
13 TIGR01480 copper_res_A copper- 100.0 6E-55 1.3E-59 448.7 36.4 319 1-416 148-586 (587)
14 PRK10965 multicopper oxidase; 100.0 3.8E-51 8.3E-56 417.6 32.1 311 1-416 151-522 (523)
15 PRK10883 FtsI repressor; Provi 100.0 7.6E-51 1.7E-55 412.0 30.3 299 2-418 152-469 (471)
16 COG2132 SufI Putative multicop 100.0 7.4E-42 1.6E-46 347.9 31.4 312 2-417 137-449 (451)
17 PF00394 Cu-oxidase: Multicopp 100.0 4.7E-33 1E-37 243.5 16.2 152 27-193 1-158 (159)
18 PF07731 Cu-oxidase_2: Multico 100.0 1.9E-31 4.1E-36 228.5 11.2 107 307-419 31-137 (138)
19 TIGR02376 Cu_nitrite_red nitri 99.9 4.6E-24 9.9E-29 205.6 10.9 163 2-194 133-298 (311)
20 TIGR02376 Cu_nitrite_red nitri 99.6 5.5E-14 1.2E-18 135.8 23.5 231 97-416 59-295 (311)
21 TIGR03389 laccase laccase, pla 99.1 2.3E-08 4.9E-13 104.3 21.8 227 97-402 34-264 (539)
22 PLN02604 oxidoreductase 99.0 2E-09 4.3E-14 112.6 13.3 89 311-418 56-144 (566)
23 PLN02835 oxidoreductase 99.0 5.1E-08 1.1E-12 101.1 21.0 197 97-399 60-276 (539)
24 PLN02792 oxidoreductase 98.9 2E-07 4.3E-12 96.5 20.2 217 97-399 47-267 (536)
25 PLN02354 copper ion binding / 98.8 3.1E-07 6.7E-12 95.5 20.8 222 97-401 58-283 (552)
26 TIGR03390 ascorbOXfungal L-asc 98.8 3E-07 6.5E-12 95.7 20.2 226 97-393 39-266 (538)
27 PLN02168 copper ion binding / 98.8 3.3E-07 7.2E-12 94.9 19.6 208 97-392 57-267 (545)
28 TIGR01480 copper_res_A copper- 98.8 5.4E-07 1.2E-11 94.1 21.0 77 311-403 261-337 (587)
29 TIGR03388 ascorbase L-ascorbat 98.8 3.7E-07 8.1E-12 95.2 19.3 245 97-401 32-280 (541)
30 PLN02991 oxidoreductase 98.8 4.5E-07 9.7E-12 93.8 19.5 213 97-398 59-276 (543)
31 PF07732 Cu-oxidase_3: Multico 98.8 1.2E-08 2.5E-13 84.1 6.4 89 311-419 27-116 (117)
32 PLN02191 L-ascorbate oxidase 98.6 1.7E-06 3.7E-11 90.6 18.3 73 311-399 227-301 (574)
33 PRK10883 FtsI repressor; Provi 98.6 2.9E-06 6.2E-11 87.0 19.6 73 312-400 222-295 (471)
34 PLN00044 multi-copper oxidase- 98.5 5.7E-06 1.2E-10 86.4 19.0 228 97-397 60-291 (596)
35 PRK10965 multicopper oxidase; 98.5 1.2E-05 2.6E-10 83.3 20.8 214 97-400 77-298 (523)
36 PF00394 Cu-oxidase: Multicopp 98.3 1.8E-06 3.8E-11 75.5 7.4 89 311-415 61-154 (159)
37 TIGR03095 rusti_cyanin rusticy 98.1 1.6E-05 3.5E-10 68.1 9.6 87 311-416 53-147 (148)
38 PF07731 Cu-oxidase_2: Multico 98.0 5.4E-05 1.2E-09 64.3 10.8 76 97-175 34-120 (138)
39 KOG1263 Multicopper oxidases [ 98.0 0.00043 9.4E-09 71.8 19.0 206 97-400 59-285 (563)
40 TIGR02656 cyanin_plasto plasto 97.7 0.00021 4.5E-09 57.1 8.0 81 311-416 18-98 (99)
41 TIGR03096 nitroso_cyanin nitro 97.5 0.00064 1.4E-08 56.6 8.1 60 311-403 62-121 (135)
42 COG2132 SufI Putative multicop 97.4 0.014 3.1E-07 59.9 19.2 74 313-402 202-275 (451)
43 PF13473 Cupredoxin_1: Cupredo 96.9 0.0041 8.8E-08 50.0 7.5 68 311-412 36-103 (104)
44 PF07732 Cu-oxidase_3: Multico 96.6 0.0023 5E-08 52.7 3.7 75 97-177 26-101 (117)
45 PF00127 Copper-bind: Copper b 96.4 0.026 5.7E-07 44.8 9.0 80 311-416 18-98 (99)
46 TIGR03096 nitroso_cyanin nitro 96.2 0.023 4.9E-07 47.5 7.6 62 95-175 59-120 (135)
47 PRK02888 nitrous-oxide reducta 96.2 0.023 4.9E-07 59.3 8.9 76 311-418 556-634 (635)
48 PRK02710 plastocyanin; Provisi 96.0 0.034 7.5E-07 45.8 7.8 70 312-416 49-118 (119)
49 TIGR03095 rusti_cyanin rusticy 96.0 0.04 8.6E-07 47.3 8.1 75 98-174 53-132 (148)
50 COG4454 Uncharacterized copper 95.3 0.05 1.1E-06 46.1 6.2 93 312-417 65-157 (158)
51 PF13473 Cupredoxin_1: Cupredo 95.1 0.12 2.6E-06 41.4 7.7 60 95-173 33-92 (104)
52 PF06525 SoxE: Sulfocyanin (So 92.6 1.3 2.7E-05 39.5 9.7 96 310-418 86-187 (196)
53 TIGR02375 pseudoazurin pseudoa 92.6 0.71 1.5E-05 37.8 7.6 35 380-418 54-88 (116)
54 PF12690 BsuPI: Intracellular 92.4 0.68 1.5E-05 35.3 7.0 65 97-173 16-82 (82)
55 TIGR03094 sulfo_cyanin sulfocy 91.9 2 4.3E-05 37.6 9.8 95 310-418 85-186 (195)
56 TIGR03102 halo_cynanin halocya 91.7 1 2.3E-05 36.7 7.7 72 311-416 43-114 (115)
57 TIGR02657 amicyanin amicyanin. 90.1 2.1 4.6E-05 32.6 7.7 70 311-415 12-81 (83)
58 TIGR02656 cyanin_plasto plasto 89.8 1.1 2.5E-05 35.4 6.2 68 96-174 16-85 (99)
59 PF00116 COX2: Cytochrome C ox 89.4 2.9 6.4E-05 34.4 8.6 60 311-404 47-106 (120)
60 TIGR02866 CoxB cytochrome c ox 86.4 2.6 5.7E-05 38.1 7.1 69 311-415 118-189 (201)
61 COG4454 Uncharacterized copper 86.1 1.7 3.7E-05 37.0 5.2 75 96-175 62-142 (158)
62 PF06525 SoxE: Sulfocyanin (So 82.4 4.9 0.00011 35.8 6.7 74 97-173 86-169 (196)
63 PF10633 NPCBM_assoc: NPCBM-as 81.5 12 0.00026 27.9 7.9 66 101-175 1-75 (78)
64 COG3794 PetE Plastocyanin [Ene 80.1 10 0.00022 31.5 7.5 72 312-417 56-127 (128)
65 TIGR01433 CyoA cytochrome o ub 79.5 4.2 9.2E-05 37.5 5.6 69 312-414 141-210 (226)
66 PRK02888 nitrous-oxide reducta 78.8 7.7 0.00017 41.0 7.8 60 97-174 555-616 (635)
67 TIGR02695 azurin azurin. Azuri 78.2 18 0.00039 29.8 8.1 76 98-173 17-110 (125)
68 PF07705 CARDB: CARDB; InterP 76.9 31 0.00068 26.5 9.9 68 100-176 14-84 (101)
69 PTZ00047 cytochrome c oxidase 75.2 9.8 0.00021 32.9 6.2 59 312-404 75-133 (162)
70 PF04151 PPC: Bacterial pre-pe 74.7 23 0.0005 25.6 7.5 65 97-174 5-69 (70)
71 TIGR01432 QOXA cytochrome aa3 74.4 6.6 0.00014 36.0 5.4 58 312-403 132-189 (217)
72 PF01835 A2M_N: MG2 domain; I 73.4 28 0.0006 27.1 8.2 71 101-176 11-86 (99)
73 PF11142 DUF2917: Protein of u 72.0 13 0.00027 26.8 5.2 47 99-157 2-48 (63)
74 COG1622 CyoA Heme/copper-type 71.7 17 0.00036 34.0 7.4 59 312-404 139-197 (247)
75 PRK02710 plastocyanin; Provisi 70.1 18 0.00039 29.6 6.5 60 96-174 46-105 (119)
76 PF00116 COX2: Cytochrome C ox 69.8 20 0.00043 29.4 6.7 58 97-174 46-103 (120)
77 PF00127 Copper-bind: Copper b 67.2 27 0.00059 27.3 6.9 64 96-174 16-85 (99)
78 MTH00047 COX2 cytochrome c oxi 64.6 19 0.00041 32.4 6.0 59 312-404 118-176 (194)
79 MTH00139 COX2 cytochrome c oxi 63.0 24 0.00052 32.5 6.6 60 311-404 141-200 (226)
80 PF14874 PapD-like: Flagellar- 62.9 70 0.0015 24.9 9.0 63 100-173 15-84 (102)
81 PF14344 DUF4397: Domain of un 61.1 87 0.0019 25.3 11.4 22 142-163 62-83 (122)
82 MTH00129 COX2 cytochrome c oxi 58.3 30 0.00065 32.0 6.3 60 311-404 141-200 (230)
83 MTH00140 COX2 cytochrome c oxi 56.9 34 0.00075 31.5 6.5 70 311-414 141-211 (228)
84 PF07691 PA14: PA14 domain; I 56.6 89 0.0019 25.8 8.7 61 98-163 53-120 (145)
85 MTH00023 COX2 cytochrome c oxi 55.4 41 0.00089 31.3 6.8 67 311-411 152-218 (240)
86 COG1470 Predicted membrane pro 55.4 1.1E+02 0.0023 31.4 9.8 76 96-178 388-470 (513)
87 PRK10525 cytochrome o ubiquino 55.2 23 0.0005 34.3 5.2 69 312-414 153-222 (315)
88 PF11614 FixG_C: IG-like fold 54.7 50 0.0011 26.7 6.6 48 106-162 34-83 (118)
89 MTH00154 COX2 cytochrome c oxi 54.3 36 0.00078 31.4 6.2 60 311-404 141-200 (227)
90 MTH00038 COX2 cytochrome c oxi 53.6 45 0.00098 30.8 6.7 68 311-412 141-208 (229)
91 MTH00098 COX2 cytochrome c oxi 53.3 54 0.0012 30.2 7.1 70 311-414 141-211 (227)
92 smart00758 PA14 domain in bact 52.0 1.1E+02 0.0023 25.2 8.3 60 99-163 52-112 (136)
93 MTH00117 COX2 cytochrome c oxi 50.3 44 0.00096 30.8 6.1 67 311-411 141-207 (227)
94 MTH00185 COX2 cytochrome c oxi 49.9 62 0.0013 29.9 7.0 67 311-411 141-207 (230)
95 MTH00168 COX2 cytochrome c oxi 49.8 50 0.0011 30.4 6.4 60 311-404 141-200 (225)
96 MTH00080 COX2 cytochrome c oxi 48.4 49 0.0011 30.6 6.1 69 312-414 145-214 (231)
97 COG3354 FlaG Putative archaeal 48.1 1.4E+02 0.003 25.3 7.8 64 105-174 70-141 (154)
98 PF04379 DUF525: Protein of un 47.3 72 0.0016 24.7 5.9 48 106-157 15-67 (90)
99 MTH00051 COX2 cytochrome c oxi 46.1 61 0.0013 30.0 6.3 61 311-405 145-205 (234)
100 MTH00027 COX2 cytochrome c oxi 45.8 61 0.0013 30.6 6.4 70 311-414 175-245 (262)
101 MTH00008 COX2 cytochrome c oxi 45.4 83 0.0018 29.0 7.1 67 311-411 141-207 (228)
102 TIGR03102 halo_cynanin halocya 44.1 98 0.0021 25.2 6.5 61 96-174 41-101 (115)
103 TIGR02695 azurin azurin. Azuri 43.8 1.9E+02 0.004 24.0 8.2 93 311-414 17-123 (125)
104 COG3794 PetE Plastocyanin [Ene 43.8 97 0.0021 25.8 6.5 63 95-175 52-114 (128)
105 PRK10378 inactive ferrous ion 38.9 98 0.0021 30.9 6.8 65 93-174 40-104 (375)
106 TIGR02375 pseudoazurin pseudoa 38.2 1E+02 0.0023 25.1 5.8 19 96-114 14-32 (116)
107 PF14016 DUF4232: Protein of u 38.1 1.2E+02 0.0026 25.0 6.5 58 103-163 17-82 (131)
108 TIGR02866 CoxB cytochrome c ox 36.7 1.2E+02 0.0026 27.2 6.7 59 97-175 117-175 (201)
109 MTH00076 COX2 cytochrome c oxi 35.8 1.1E+02 0.0024 28.2 6.3 62 311-406 141-202 (228)
110 PF15415 DUF4622: Protein of u 31.3 2.2E+02 0.0049 26.3 7.2 41 98-140 95-137 (310)
111 cd01304 FMDH_A Formylmethanofu 30.1 7.9 0.00017 40.4 -2.4 53 337-411 224-276 (541)
112 PF14392 zf-CCHC_4: Zinc knuck 29.8 78 0.0017 21.2 3.2 41 368-408 4-45 (49)
113 PF08329 ChitinaseA_N: Chitina 29.8 92 0.002 26.1 4.2 42 98-143 76-119 (133)
114 PF14734 DUF4469: Domain of un 27.7 1.7E+02 0.0036 23.3 5.2 46 130-176 41-86 (102)
115 PF10989 DUF2808: Protein of u 27.3 66 0.0014 27.3 3.1 25 378-402 99-127 (146)
116 TIGR02745 ccoG_rdxA_fixG cytoc 26.8 2.2E+02 0.0048 29.1 7.3 49 106-162 349-398 (434)
117 PRK09918 putative fimbrial cha 26.2 1.7E+02 0.0037 27.0 5.9 21 95-115 74-94 (230)
118 PRK15249 fimbrial chaperone pr 25.1 1.1E+02 0.0024 28.7 4.4 21 95-115 84-104 (253)
119 PRK09926 putative chaperone pr 24.7 1.1E+02 0.0023 28.7 4.2 22 95-116 80-101 (246)
120 PRK05461 apaG CO2+/MG2+ efflux 24.4 2.2E+02 0.0047 23.7 5.5 49 106-157 32-84 (127)
121 KOG4078 Putative mitochondrial 23.7 48 0.001 27.7 1.5 37 101-139 120-156 (173)
122 PRK15195 fimbrial chaperone pr 23.6 1.3E+02 0.0029 27.7 4.7 22 95-116 76-97 (229)
123 PRK15299 fimbrial chaperone pr 23.4 1.2E+02 0.0026 27.9 4.3 22 95-116 75-96 (227)
124 cd05791 S1_CSL4 S1_CSL4: CSL4, 23.0 98 0.0021 23.9 3.1 32 101-132 61-92 (92)
125 COG5633 Predicted periplasmic 22.7 2E+02 0.0043 23.4 4.7 56 320-394 58-113 (123)
126 PF04225 OapA: Opacity-associa 21.8 1.9E+02 0.0041 22.0 4.4 40 100-139 42-82 (85)
127 PF12945 YcgR_2: Flagellar pro 20.9 1.5E+02 0.0033 22.0 3.8 37 375-412 45-81 (87)
128 COG1622 CyoA Heme/copper-type 20.8 4.2E+02 0.0091 24.8 7.3 59 97-175 137-195 (247)
129 cd01272 FE65_N Fe65 Phosphotyr 20.1 1.5E+02 0.0032 24.8 3.6 39 337-403 75-113 (138)
No 1
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=1.1e-83 Score=664.24 Aligned_cols=432 Identities=76% Similarity=1.317 Sum_probs=327.3
Q ss_pred CccccceeeeEEEECCCCCCCCCCCCcceEEEEeecCCCCHHHHHhhhcCCCCCcCCCCCceEEcCCCCCCCcccccccC
Q 013385 1 MQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSN 80 (444)
Q Consensus 1 ~Q~~dGL~G~lIV~~~~~~~~p~~~D~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~c~~~~~~~~ 80 (444)
.|+++||+|+|||+++.++..|+.||+|++|+|+||+|+...+....+...+..+..+++++||||+++++|........
T Consensus 107 ~q~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~ 186 (541)
T TIGR03388 107 MQRSAGLYGSLIVDVPDGEKEPFHYDGEFNLLLSDWWHKSIHEQEVGLSSKPMRWIGEPQSLLINGRGQFNCSLAAKFSS 186 (541)
T ss_pred HHhhccceEEEEEecCCCCCCCccccceEEEEeecccCCCHHHHHhhcccCCCcCCCCCcceEECCCCCCCCccccccCc
Confidence 48999999999999997666788899999999999999988766655544333334578999999999998875321111
Q ss_pred CCccccccCCCCCCCceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEe
Q 013385 81 GSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLT 160 (444)
Q Consensus 81 ~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~ 160 (444)
.....|..+.+..+.+.++.|++|++|||||||+|+.+.+.|+||+|+|+|||+||++++|++++.|.|++||||||+|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~ 266 (541)
T TIGR03388 187 TNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVEADGNYVEPFTVKDIDIYSGETYSVLLT 266 (541)
T ss_pred cccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEEeCCEecccceeCeEEecCCCEEEEEEe
Confidence 12234544445566667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEecCCCCCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCccceEE
Q 013385 161 TNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRL 240 (444)
Q Consensus 161 ~~~~~~g~y~i~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 240 (444)
+++.++++||||+.....+.+....+|||+|.++.....++.+.+..|.+.+..........+......+.++...++++
T Consensus 267 ~~~~~~~~y~ira~~~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (541)
T TIGR03388 267 TDQDPSRNYWISVGVRGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRI 346 (541)
T ss_pred CCCCCCCcEEEEEecccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEE
Confidence 99855579999998766544456789999998654332222222333444433222111111211111223345567777
Q ss_pred EEEecccccCCeEEEEecCccccCCCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCCccccceEEEccCCCEE
Q 013385 241 TLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTV 320 (444)
Q Consensus 241 ~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v 320 (444)
.+........+..+|.+||.+|..|..|+|.....+....|+...++..+..+++....+.+...+.++.++.++.|++|
T Consensus 347 ~~~~~~~~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V 426 (541)
T TIGR03388 347 VLLNTQNKINGYTKWAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTV 426 (541)
T ss_pred EEeccCcccCceEEEEECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeE
Confidence 65544332345567999999999999999988776655555444344333333332222223334556778999999999
Q ss_pred EEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCch-hhcccCCCCCCccceEEeCCCcEEEEEEEcCCceeeEEe
Q 013385 321 DVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE-DEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFH 399 (444)
Q Consensus 321 ~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~-~~~~~n~~~p~~rDTv~v~~~g~v~irf~adnpG~w~~H 399 (444)
||+|+|.+.+.......||||||||+||||++|.|.|+.. +...+|+.||++|||+.|+++||++|||+|||||.|+||
T Consensus 427 divi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~H 506 (541)
T TIGR03388 427 DVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFH 506 (541)
T ss_pred EEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeee
Confidence 9999997543111233899999999999999999999765 556799999999999999999999999999999999999
Q ss_pred ccChhhHhcccEEEEecccccccCCCCCCcccC
Q 013385 400 CHIEPHFHIGMGVVLALGVETVGNIPNQALACG 432 (444)
Q Consensus 400 CHi~~H~~~GM~~~~~~~~~~~~~~P~~~~~C~ 432 (444)
|||+||++.||+++|.|++++++++|++++.|+
T Consensus 507 CHi~~H~~~GM~~~~~e~~~~~~~~P~~~~~C~ 539 (541)
T TIGR03388 507 CHIEPHLHMGMGVVFAEGVEKVGKLPKEALGCG 539 (541)
T ss_pred ccchhhhhcccEEEEeccccccCCCCccccCCC
Confidence 999999999999999999999999999999998
No 2
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=2.7e-82 Score=654.07 Aligned_cols=439 Identities=67% Similarity=1.206 Sum_probs=318.6
Q ss_pred CccccceeeeEEEECCCCCCCCCCCCcceEEEEeecCCCCHHHHHhhhcCCCCCcCCCCCceEEcCCCCCCCcccccccC
Q 013385 1 MQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSN 80 (444)
Q Consensus 1 ~Q~~dGL~G~lIV~~~~~~~~p~~~D~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~c~~~~~~~~ 80 (444)
.|+++||+|+|||+++.+..+++.||+|++|+|+||+|+...+....+...+..+.+++|++||||+|+++|........
T Consensus 129 ~q~~~Gl~G~liV~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~ 208 (574)
T PLN02191 129 MQRSAGLYGSLIVDVAKGPKERLRYDGEFNLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQFNCSLAAQFSN 208 (574)
T ss_pred HHHhCCCEEEEEEccCCCCCCCCCCCeeEEEeeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCCCCCcccccccC
Confidence 48999999999999876545567889999999999999876554444433332334688999999999998864221111
Q ss_pred C-CccccccCCCCCCCceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEE
Q 013385 81 G-SAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLL 159 (444)
Q Consensus 81 ~-~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v 159 (444)
+ ....|....+..+.+.+++|++||+|||||||+|+.+.+.|+||||+|+|||+||++++|+++++|.|++||||||+|
T Consensus 209 ~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV 288 (574)
T PLN02191 209 GTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLL 288 (574)
T ss_pred CcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEE
Confidence 1 112343333345566689999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEecCCCCCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCC-Cccce
Q 013385 160 TTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPP-TNFHR 238 (444)
Q Consensus 160 ~~~~~~~g~y~i~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~ 238 (444)
++++.++++||||+.....+.......|||+|.+......++...|..|.+.+..........+......+.+| ...+.
T Consensus 289 ~a~~~~~~~y~ira~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 368 (574)
T PLN02191 289 TTDQDPSQNYYISVGVRGRKPNTTQALTILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKR 368 (574)
T ss_pred ECCCCCCCCEEEEEEccccCCCCCCceEEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccce
Confidence 99985456899999876555434456799999865433222222222333333222211111111111112222 22345
Q ss_pred EEEEEecccccCCeEEEEecCccccCCCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCCccccceEEEccCCC
Q 013385 239 RLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNT 318 (444)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 318 (444)
++.+... ....+..+|.|||++|..|..|+|.+...+..+.|+...++..+..+++..+.......+.++.++.++.|+
T Consensus 369 ~~~~~~~-~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 447 (574)
T PLN02191 369 LILLNTQ-NLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNV 447 (574)
T ss_pred EEEeccc-ceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCC
Confidence 5544322 112345689999999999999999888766666555444433222233211111111223455688999999
Q ss_pred EEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCch-hhcccCCCCCCccceEEeCCCcEEEEEEEcCCceeeE
Q 013385 319 TVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE-DEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWA 397 (444)
Q Consensus 319 ~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~-~~~~~n~~~p~~rDTv~v~~~g~v~irf~adnpG~w~ 397 (444)
+|||+|+|...........||||||||+||||++|.|.|++. +...+|+.||++|||+.|+++||++|||+|||||.|+
T Consensus 448 ~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl 527 (574)
T PLN02191 448 TVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWF 527 (574)
T ss_pred EEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEE
Confidence 999999997521001123899999999999999999999864 4457899999999999999999999999999999999
Q ss_pred EeccChhhHhcccEEEEecccccccCCCCCCcccCcccccccC
Q 013385 398 FHCHIEPHFHIGMGVVLALGVETVGNIPNQALACGLTGKRFMN 440 (444)
Q Consensus 398 ~HCHi~~H~~~GM~~~~~~~~~~~~~~P~~~~~C~~~~~~~~~ 440 (444)
|||||+||++.||+++|.|++++++++|+.++.|+.++...+.
T Consensus 528 ~HCHi~~Hl~~Gm~~~~~e~~~~~~~~p~~~~~C~~~~~~~~~ 570 (574)
T PLN02191 528 FHCHIEPHLHMGMGVVFAEGLNRIGKIPDEALGCGLTKQFLMN 570 (574)
T ss_pred EecCchhhhhcCCEEEEecChhhccCCCcchhhhhcccccccc
Confidence 9999999999999999999999999999999999988776553
No 3
>PLN02604 oxidoreductase
Probab=100.00 E-value=4.3e-81 Score=646.64 Aligned_cols=433 Identities=52% Similarity=0.973 Sum_probs=318.7
Q ss_pred CccccceeeeEEEECCCCCCCCCCCCcceEEEEeecCCCCHHHHHhhhcCCCCCcCCCCCceEEcCCCCCCCcccccccC
Q 013385 1 MQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSN 80 (444)
Q Consensus 1 ~Q~~dGL~G~lIV~~~~~~~~p~~~D~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~c~~~~~~~~ 80 (444)
.|+++||+|+|||+++++++.|+.||.|++|+|+||+|+...+....+......+..++|++||||+|+++|+.... ..
T Consensus 130 ~q~~~Gl~G~liV~~~~~~~~p~~~d~d~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~-~~ 208 (566)
T PLN02604 130 MQREAGLYGSIRVSLPRGKSEPFSYDYDRSIILTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSS-PY 208 (566)
T ss_pred HHHhCCCeEEEEEEecCCCCCccccCcceEEEeeccccCCHHHHHHhhccCCCccCCCCCceEEcCCCCCCCccccC-cc
Confidence 48999999999999987766788999999999999999998777665544332234578999999999998874110 00
Q ss_pred CCccccccCCCCCCCceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEe
Q 013385 81 GSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLT 160 (444)
Q Consensus 81 ~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~ 160 (444)
.....|. .++..+.+++++|++|++|||||||+|+.+.+.|+||||+|+|||+||++++|++++.|.|++||||||+|+
T Consensus 209 ~~~~~~~-~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~ 287 (566)
T PLN02604 209 LKAGVCN-ATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVK 287 (566)
T ss_pred ccccccc-cCCCCCCceEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEE
Confidence 0001233 233345667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEecCCCCCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCC-CCCCCccceE
Q 013385 161 TNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGS-PKPPTNFHRR 239 (444)
Q Consensus 161 ~~~~~~g~y~i~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~ 239 (444)
+++.++++||||+.....+.+...++|||+|.++.....++...+..+.+++..........+...... ..++...+++
T Consensus 288 ~~~~~~~~y~ira~~~~~~~~~~~~~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 367 (566)
T PLN02604 288 ADQDPSRNYWVTTSVVSRNNTTPPGLAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRV 367 (566)
T ss_pred CCCCCCCCEEEEEecccCCCCCcceeEEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeE
Confidence 998444689999886655545677899999985432111111112222233321111111111111111 1233455777
Q ss_pred EEEEecccccCCeEEEEecCccccCCCCCccccccccCCccCCCCCCCCCCC-CCccccCCCCCCCccccceEEEccCCC
Q 013385 240 LTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFS-NEYDVMKPPVNANTTLGSGVYMLGLNT 318 (444)
Q Consensus 240 ~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~ 318 (444)
+.+....+..++...|.||+++|..|..|.|........+.|+...+|..+. ..++......+.+.+.+..++.++.|+
T Consensus 368 ~~~~~~~~~~~~~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 447 (566)
T PLN02604 368 IVLLNTQNEVNGYRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNS 447 (566)
T ss_pred EEEeccccccCCeEEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCC
Confidence 7665444333455789999999999999998877765555564333332221 111111111111233456689999999
Q ss_pred EEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCch-hhcccCCCCCCccceEEeCCCcEEEEEEEcCCceeeE
Q 013385 319 TVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE-DEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWA 397 (444)
Q Consensus 319 ~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~-~~~~~n~~~p~~rDTv~v~~~g~v~irf~adnpG~w~ 397 (444)
+||++|+|.+.+.......||||||||+||||++|.|.|++. +...+|+.||++|||+.|+++||++|||+|||||.|+
T Consensus 448 ~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~Wl 527 (566)
T PLN02604 448 TVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWA 527 (566)
T ss_pred eEEEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEee
Confidence 999999997533111233899999999999999999999865 4567899999999999999999999999999999999
Q ss_pred EeccChhhHhcccEEEEecccccccCCCCCCcccCccc
Q 013385 398 FHCHIEPHFHIGMGVVLALGVETVGNIPNQALACGLTG 435 (444)
Q Consensus 398 ~HCHi~~H~~~GM~~~~~~~~~~~~~~P~~~~~C~~~~ 435 (444)
|||||+||++.||+++|.|++++++++|..+++|+..+
T Consensus 528 fHCHI~~Hl~~GM~~v~~e~~~~~~~~p~~~~~C~~~~ 565 (566)
T PLN02604 528 FHCHIESHFFMGMGVVFEEGIERVGKLPSSIMGCGESK 565 (566)
T ss_pred EeecchhHhhcCCEEEEeeChhhccCCCCCcCccccCC
Confidence 99999999999999999999999999999999998654
No 4
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=4.2e-77 Score=610.61 Aligned_cols=397 Identities=26% Similarity=0.445 Sum_probs=298.7
Q ss_pred CccccceeeeEEEECCCCCCCCCCC--CcceEEEEeecCCCCHHHHHhhhcCCCCCcCCCCCceEEcCCCCC--CCcccc
Q 013385 1 MQRSAGLYGSLIVDVADGEKEPFHY--DGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQF--NCSLAA 76 (444)
Q Consensus 1 ~Q~~dGL~G~lIV~~~~~~~~p~~~--D~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~--~c~~~~ 76 (444)
+|+++||+|+|||+++++.+.||.+ ++|.+|+|+||+|++..++.. ....+.. .+++|++||||++.+ +|+..
T Consensus 134 ~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~~~-~l~~g~~-~~~~d~~lING~g~~~~n~~~~- 210 (596)
T PLN00044 134 LHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRALRR-ALDAGDL-LGAPDGVLINAFGPYQYNDSLV- 210 (596)
T ss_pred hhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHHHH-HHhcCCC-CCCCCceEEcccCccccCCccc-
Confidence 5999999999999998765666654 479999999999998776543 3333322 457899999999875 33310
Q ss_pred cccCCCccccccCCCCCCCceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEE
Q 013385 77 HFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYS 156 (444)
Q Consensus 77 ~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~d 156 (444)
. ..+..+++.|++||+|||||||+++.+.+.|+|+||+|+|||+||.+++|+.++.|.|++|||||
T Consensus 211 -------------~-~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRyd 276 (596)
T PLN00044 211 -------------P-PGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYS 276 (596)
T ss_pred -------------c-CCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCcccCceeeeeEEEcCCceEE
Confidence 0 12334589999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcceEEEEEec-CCC--CCCCCeEEEEEEcCCCCCCCCCCCCCCCCC-CCCCccccccccccccCCC--C-
Q 013385 157 VLLTTNQDPSYNYWISAGVR-GRK--PATPPALTLLNYHPTSASKIPLSPPPITPR-WDDYDHSKSFSNKIFALMG--S- 229 (444)
Q Consensus 157 V~v~~~~~~~g~y~i~~~~~-~~~--~~~~~~~ail~y~~~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~~~~--~- 229 (444)
|+|++++.++++||||+... ..+ .+...+.|||+|.++...... +.|..|. +++......+...++.... .
T Consensus 277 VLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~--~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~ 354 (596)
T PLN00044 277 FLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSNSQGPASG--PLPDAPDDQYDTAFSINQARSIRWNVTASGA 354 (596)
T ss_pred EEEECCCCCCCceEEEEecccccCccccCcceeEEEEECCCCCCCCC--CCCCCCcccCCchhhhhhhHhhhhccCCCcC
Confidence 99999994345899998753 223 255678899999864321111 1233343 4454433322223332211 1
Q ss_pred CCCCCccceEEEEEeccc---------ccCCeEEEEecCccccCCCCCccccccccCCccCCCC---CCCCCCCCCcccc
Q 013385 230 PKPPTNFHRRLTLLNTQN---------TINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQN---GPPENFSNEYDVM 297 (444)
Q Consensus 230 ~~~p~~~~~~~~~~~~~~---------~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~---~~p~~~~~~~~~~ 297 (444)
.++|+..+....+...+. ...+...|+|||++|..|++|+|.+..++.++.|+.+ .+|
T Consensus 355 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp---------- 424 (596)
T PLN00044 355 RPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPM---------- 424 (596)
T ss_pred CCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCC----------
Confidence 112222222222221111 1124578999999999999999987777766655322 222
Q ss_pred CCCCCCCccccceEEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEE
Q 013385 298 KPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAV 377 (444)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~ 377 (444)
+......+.++.+++|++|||+|+|.... .||||||||+|+||++|.|+|++.++..+|+.||++|||+.
T Consensus 425 ----~~~~~~~t~v~~~~~n~~VeiV~qn~~~~------~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~ 494 (596)
T PLN00044 425 ----NRLPKLDTSIINGTYKGFMEIIFQNNATN------VQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQ 494 (596)
T ss_pred ----ccccccCceEEEcCCCCEEEEEEeCCCCC------CCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEE
Confidence 11123356789999999999999997544 89999999999999999999997777789999999999999
Q ss_pred eCCCcEEEEEEEcCCceeeEEeccChhhHhcccEEEE-----ecc-cccccCCCCCCcccCcccc
Q 013385 378 IFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVL-----ALG-VETVGNIPNQALACGLTGK 436 (444)
Q Consensus 378 v~~~g~v~irf~adnpG~w~~HCHi~~H~~~GM~~~~-----~~~-~~~~~~~P~~~~~C~~~~~ 436 (444)
|+++||++|||+|||||.|+|||||+.|+..||.++| .++ .++++++|++++.||..++
T Consensus 495 vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~Cg~~~~ 559 (596)
T PLN00044 495 VFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFCGALSS 559 (596)
T ss_pred eCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCccccccc
Confidence 9999999999999999999999999999999999999 333 4578899999999986655
No 5
>PLN02991 oxidoreductase
Probab=100.00 E-value=1.2e-76 Score=604.02 Aligned_cols=387 Identities=26% Similarity=0.472 Sum_probs=291.7
Q ss_pred CccccceeeeEEEECCCCCCCCCC-CCcceEEEEeecCCCCHHHHHhhhcCCCCCcCCCCCceEEcCCCCCCCccccccc
Q 013385 1 MQRSAGLYGSLIVDVADGEKEPFH-YDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFS 79 (444)
Q Consensus 1 ~Q~~dGL~G~lIV~~~~~~~~p~~-~D~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~c~~~~~~~ 79 (444)
+|+++||+|+|||+++++++.|+. +|+|++|+|+||+|+...++...+. .+.. ++++|++|||||+..
T Consensus 133 ~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~~~-~~~~-~~~~d~~liNG~~~~--------- 201 (543)
T PLN02991 133 FHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQLD-NGGK-LPLPDGILINGRGSG--------- 201 (543)
T ss_pred hhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHHhh-cCCC-CCCCCEEEEccCCCC---------
Confidence 489999999999999876566764 6899999999999998777654443 3333 568999999999864
Q ss_pred CCCccccccCCCCCCCceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEE
Q 013385 80 NGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLL 159 (444)
Q Consensus 80 ~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v 159 (444)
+++.|++||+|||||||+|+...+.|+|+||+|+|||+||++++|..++.|.|++||||||+|
T Consensus 202 -----------------~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~GQRydvlv 264 (543)
T PLN02991 202 -----------------ATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVGQSYSVLI 264 (543)
T ss_pred -----------------ceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEEEcCCcEEEEEE
Confidence 268999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEecCCCCCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCCCCc--cccccccccccCCCCCCCCC---
Q 013385 160 TTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYD--HSKSFSNKIFALMGSPKPPT--- 234 (444)
Q Consensus 160 ~~~~~~~g~y~i~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~--~~~~~~~~~~~~~~~~~~p~--- 234 (444)
++++ +.++||||+...... ......|||+|.++...... +.|..|...... ........+....+ ...|.
T Consensus 265 ~a~~-~~~~y~i~~~~~~~~-~~~~~~AIl~Y~g~~~~~~~--~~p~~p~~~~~~~~~~~~~~~~l~p~~~-~~~p~~~~ 339 (543)
T PLN02991 265 TADQ-PAKDYYIVVSSRFTS-KILITTGVLHYSNSAGPVSG--PIPDGPIQLSWSFDQARAIKTNLTASGP-RPNPQGSY 339 (543)
T ss_pred ECCC-CCCcEEEEEeeccCC-CCcceEEEEEeCCCCCCCCC--CCCCCCccccccccchhhhhhcccCCCC-CCCCCccc
Confidence 9999 678999999864332 34567899999865422111 112221111000 00011112221111 11111
Q ss_pred -----ccceEEEEEecccccCCeEEEEecCccccCCCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCCccccc
Q 013385 235 -----NFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGS 309 (444)
Q Consensus 235 -----~~~~~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 309 (444)
..++++.+........+...|+|||.+|..|.+|+|.+.++.+++.|..+.-+ ..+.+......+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~----------~~~~~~~~~~~~ 409 (543)
T PLN02991 340 HYGKINITRTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIP----------DQPTNGAIFPVT 409 (543)
T ss_pred cccccccceeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCcccccccc----------ccCCCCccccCC
Confidence 12333333322221235578999999999999999987776666655321000 001111122345
Q ss_pred eEEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEE
Q 013385 310 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 389 (444)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~ 389 (444)
.++.++.|++|||+|+|.... .||||||||+||||++|.|.|++.++..+|+.||++|||+.|+++||++|||+
T Consensus 410 ~v~~~~~~~~VeiViqn~~~~------~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~ 483 (543)
T PLN02991 410 SVMQTDYKAFVEIVFENWEDI------VQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVS 483 (543)
T ss_pred cEEEcCCCCEEEEEEeCCCCC------CCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEE
Confidence 678999999999999997765 89999999999999999999987666789999999999999999999999999
Q ss_pred cCCceeeEEeccChhhHhcccEEEE-----ecccccccCCCCCCcccCcccc
Q 013385 390 ADNPGAWAFHCHIEPHFHIGMGVVL-----ALGVETVGNIPNQALACGLTGK 436 (444)
Q Consensus 390 adnpG~w~~HCHi~~H~~~GM~~~~-----~~~~~~~~~~P~~~~~C~~~~~ 436 (444)
|||||.|+|||||.+|+..||.+++ .++.++++++|++++.||..++
T Consensus 484 aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg~~~~ 535 (543)
T PLN02991 484 LDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLCGRATG 535 (543)
T ss_pred CCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCccccCCC
Confidence 9999999999999999999999999 4555678999999999985544
No 6
>PLN02792 oxidoreductase
Probab=100.00 E-value=2.8e-76 Score=602.38 Aligned_cols=387 Identities=27% Similarity=0.455 Sum_probs=294.3
Q ss_pred CccccceeeeEEEECCCCCCCCCC-CCcceEEEEeecCCCCHHHHHhhhcCCCCCcCCCCCceEEcCCCCCCCccccccc
Q 013385 1 MQRSAGLYGSLIVDVADGEKEPFH-YDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFS 79 (444)
Q Consensus 1 ~Q~~dGL~G~lIV~~~~~~~~p~~-~D~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~c~~~~~~~ 79 (444)
+|+++||+|+|||+++++++.||. +|+|++|+|+||+|+...++.. ....+...+.++|++||||++...|
T Consensus 121 ~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~-~~~~g~~~~~~~d~~liNG~~~~~~------- 192 (536)
T PLN02792 121 VQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKK-ILDGGRKLPLMPDGVMINGQGVSYV------- 192 (536)
T ss_pred hhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHH-HhhccCcCCCCCCEEEEeccCCCCc-------
Confidence 589999999999998765455654 5889999999999998766433 3333333234889999999987522
Q ss_pred CCCccccccCCCCCCCceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEE
Q 013385 80 NGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLL 159 (444)
Q Consensus 80 ~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v 159 (444)
+++.|++||+|||||||+|+.+.+.|+|+||+|+|||+||++++|..++.|.|++||||||+|
T Consensus 193 -----------------~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqRydVlV 255 (536)
T PLN02792 193 -----------------YSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQTYSVLV 255 (536)
T ss_pred -----------------ceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEEEEccCceEEEEE
Confidence 369999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEecCCCCCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCCCCccccccccccccC-C-CC-CCCCCc-
Q 013385 160 TTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFAL-M-GS-PKPPTN- 235 (444)
Q Consensus 160 ~~~~~~~g~y~i~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~-~-~~-~~~p~~- 235 (444)
++++ ++|+|||++.....+ ......|||+|.++..... ..|..|.+++..........+... . +. ..+|+.
T Consensus 256 ~a~~-~~g~Y~i~a~~~~~~-~~~~~~ail~Y~g~~~~~~---~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~ 330 (536)
T PLN02792 256 TMDQ-PPQNYSIVVSTRFIA-AKVLVSSTLHYSNSKGHKI---IHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGS 330 (536)
T ss_pred EcCC-CCceEEEEEEeccCC-CCCceEEEEEECCCCCCCC---CCCCCCCcCCccccccchhhhhhccCCCCCCCCCCcc
Confidence 9998 578999999875433 3457789999986533211 122233333333222111111111 0 11 112211
Q ss_pred -------cceEEEEEecccccCCeEEEEecCccccCCCCCccccccccCCccCCC----CCCCCCCCCCccccCCCCCCC
Q 013385 236 -------FHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQ----NGPPENFSNEYDVMKPPVNAN 304 (444)
Q Consensus 236 -------~~~~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~~~~~ 304 (444)
.++++.+........+...|+|||++|..|++|+|.+.++++.+.+.. ..+|.. ..
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~-------------~~ 397 (536)
T PLN02792 331 YHYGKMKISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRG-------------GG 397 (536)
T ss_pred cccceeccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCccc-------------CC
Confidence 223333333222223467899999999999999998877655554421 122211 11
Q ss_pred ccccceEEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEE
Q 013385 305 TTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWT 384 (444)
Q Consensus 305 ~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v 384 (444)
...++.++.++.|++|||+|+|.... .||||||||+||||++|.|.|++.++..+|+.||++||||.|+++||+
T Consensus 398 ~~~~~~v~~~~~~~~VeiViqn~~~~------~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~ 471 (536)
T PLN02792 398 MRLDTSVMGAHHNAFLEIIFQNREKI------VQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWT 471 (536)
T ss_pred CccCceEEEcCCCCEEEEEEECCCCC------CCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEE
Confidence 12346688999999999999997665 899999999999999999999876677899999999999999999999
Q ss_pred EEEEEcCCceeeEEeccChhhHhcccEEEE-----ecccccccCCCCCCcccCcccc
Q 013385 385 ALRFVADNPGAWAFHCHIEPHFHIGMGVVL-----ALGVETVGNIPNQALACGLTGK 436 (444)
Q Consensus 385 ~irf~adnpG~w~~HCHi~~H~~~GM~~~~-----~~~~~~~~~~P~~~~~C~~~~~ 436 (444)
+|||+|||||.|+||||+.+|+..||.++| .++.++++++|++++.||..+.
T Consensus 472 aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~Cg~~~~ 528 (536)
T PLN02792 472 AVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLCGRASN 528 (536)
T ss_pred EEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCccccccC
Confidence 999999999999999999999999999999 4556688999999999986544
No 7
>PLN02835 oxidoreductase
Probab=100.00 E-value=5e-76 Score=602.50 Aligned_cols=387 Identities=28% Similarity=0.482 Sum_probs=288.5
Q ss_pred CccccceeeeEEEECCCCCCCCCC-CCcceEEEEeecCCCCHHHHHhhhcCCCCCcCCCCCceEEcCCCCCCCccccccc
Q 013385 1 MQRSAGLYGSLIVDVADGEKEPFH-YDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFS 79 (444)
Q Consensus 1 ~Q~~dGL~G~lIV~~~~~~~~p~~-~D~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~c~~~~~~~ 79 (444)
.|+++||+|+|||+++++.+.|+. +|+|++|+|+||+++...++...+.. +.. .+++|++||||+..+
T Consensus 134 ~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~-g~~-~~~~d~~liNG~~~~--------- 202 (539)
T PLN02835 134 FHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQRLDS-GKV-LPFPDGVLINGQTQS--------- 202 (539)
T ss_pred chhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHHhhc-CCC-CCCCceEEEccccCc---------
Confidence 499999999999997654444553 58999999999999998776544433 322 568899999999875
Q ss_pred CCCccccccCCCCCCCceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEE
Q 013385 80 NGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLL 159 (444)
Q Consensus 80 ~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v 159 (444)
++.|++||+|||||||+|+.+.+.|+|+||+|+|||+||++++|+.++.|.|++||||||+|
T Consensus 203 ------------------~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv 264 (539)
T PLN02835 203 ------------------TFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLV 264 (539)
T ss_pred ------------------eEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeEEEECcCceEEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEecCCCCCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCC---CCccccccccccccCCCCCCCC---
Q 013385 160 TTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWD---DYDHSKSFSNKIFALMGSPKPP--- 233 (444)
Q Consensus 160 ~~~~~~~g~y~i~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~---~~~~~~~~~~~~~~~~~~~~~p--- 233 (444)
++++ ++|+|||++.....+ ......|+|+|.++.... +.+.|..|... +..........+......+.+.
T Consensus 265 ~~~~-~~g~y~i~a~~~~~~-~~~~~~ail~Y~~~~~~~--~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~ 340 (539)
T PLN02835 265 TLNQ-SPKDYYIVASTRFTR-QILTATAVLHYSNSRTPA--SGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSF 340 (539)
T ss_pred EcCC-CCCcEEEEEEccccC-CCcceEEEEEECCCCCCC--CCCCCCCCccccccccchhhccccccCccccCCCCCccc
Confidence 9998 468999998753333 245679999998643211 11122222110 1100000000111110001100
Q ss_pred ----CccceEEEEEecccccCCeEEEEecCccccCCCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCCccccc
Q 013385 234 ----TNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGS 309 (444)
Q Consensus 234 ----~~~~~~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 309 (444)
...++++.+.......++...|+|||++|..|..|+|.+.+++..+.|.....+ ..+.+...+.++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~t 410 (539)
T PLN02835 341 HYGKITPTKTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQ----------SLPSGGPAFVAT 410 (539)
T ss_pred cccccCCCceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccc----------cCCCCCccccCC
Confidence 112455544332222245678999999999999999876665444433211000 011111233456
Q ss_pred eEEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEE
Q 013385 310 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 389 (444)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~ 389 (444)
.++.++.|++|||+|+|.+.. .||||||||+||||++|.|.|+......+|+.||++|||+.|+++||++|||+
T Consensus 411 ~~~~~~~~~~Veivi~N~~~~------~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~ 484 (539)
T PLN02835 411 SVMQTSLHDFLEVVFQNNEKT------MQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVS 484 (539)
T ss_pred eEEEcCCCCEEEEEEECCCCC------CCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEE
Confidence 789999999999999998765 89999999999999999999976555568999999999999999999999999
Q ss_pred cCCceeeEEeccChhhHhcccEEEE-----ecccccccCCCCCCcccCcccc
Q 013385 390 ADNPGAWAFHCHIEPHFHIGMGVVL-----ALGVETVGNIPNQALACGLTGK 436 (444)
Q Consensus 390 adnpG~w~~HCHi~~H~~~GM~~~~-----~~~~~~~~~~P~~~~~C~~~~~ 436 (444)
|||||.|+|||||++|+..||+++| .++.++++++|++++.||..++
T Consensus 485 aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~Cg~~~~ 536 (539)
T PLN02835 485 LDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLCGKAIG 536 (539)
T ss_pred CcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCccccccccCcc
Confidence 9999999999999999999999999 4555688999999999986654
No 8
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=9e-75 Score=594.00 Aligned_cols=392 Identities=27% Similarity=0.502 Sum_probs=286.9
Q ss_pred CccccceeeeEEEECCCCCCCCCC-CCcceEEEEeecCCCCHHHHHhhhcCCCCCcCCCCCceEEcCCCCCCCccccccc
Q 013385 1 MQRSAGLYGSLIVDVADGEKEPFH-YDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFS 79 (444)
Q Consensus 1 ~Q~~dGL~G~lIV~~~~~~~~p~~-~D~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~c~~~~~~~ 79 (444)
+|+++||+|+|||+++++.+.||+ +|+|++|+|+||+|+...++...+ ..+.. .+++|++||||++...|
T Consensus 132 ~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~-~~g~~-~~~~d~~liNG~~~~~~------- 202 (552)
T PLN02354 132 MHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALKKFL-DSGRT-LGRPDGVLINGKSGKGD------- 202 (552)
T ss_pred ceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHHHHH-hcCCC-CCCCCeEEEeCCcCCCC-------
Confidence 599999999999999876555664 478999999999999877654433 33322 45789999999976421
Q ss_pred CCCccccccCCCCCCCceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEE
Q 013385 80 NGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLL 159 (444)
Q Consensus 80 ~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v 159 (444)
....++++|++||+|||||||+|+...+.|+|+||+|+|||+||++++|+.++.|.|++||||||+|
T Consensus 203 -------------~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv 269 (552)
T PLN02354 203 -------------GKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLV 269 (552)
T ss_pred -------------CCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeEEEEccCceEEEEE
Confidence 1123579999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEecCCCCCCCCeEEEEEEcCCCCCCCCCCCCCCCCC-CC-CCccccccccccccCCCCCCC-----
Q 013385 160 TTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPR-WD-DYDHSKSFSNKIFALMGSPKP----- 232 (444)
Q Consensus 160 ~~~~~~~g~y~i~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~-~~-~~~~~~~~~~~~~~~~~~~~~----- 232 (444)
++++ ++|+|||++.....+ ......|||+|.++.....+ ..|..+. +. ...........+......+.+
T Consensus 270 ~a~~-~~g~Y~i~a~~~~~~-~~~~~~ail~Y~g~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~ 345 (552)
T PLN02354 270 TANQ-APKDYYMVASTRFLK-KVLTTTGIIRYEGGKGPASP--ELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYH 345 (552)
T ss_pred ECCC-CCCcEEEEEeccccC-CCccEEEEEEECCCCCCCCC--CCCCCCcccccchhhhhhhhhcccccccCCCCCCccc
Confidence 9998 568999999854332 34567999999865332111 1121111 00 000000111111111110110
Q ss_pred --CCccceEEEEEecccccCCeEEEEecCccccCCCCCccccccccCC-ccCC----CCCCCCCCCCCccccCCCCCCCc
Q 013385 233 --PTNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLK-DAFD----QNGPPENFSNEYDVMKPPVNANT 305 (444)
Q Consensus 233 --p~~~~~~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~-~~~~----~~~~p~~~~~~~~~~~~~~~~~~ 305 (444)
....++++.+.......++...|+|||++|..|.+|+|.+.++++. +.+. +..+|..+ ...
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~------------~~~ 413 (552)
T PLN02354 346 YGKINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKI------------TKI 413 (552)
T ss_pred cccccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCcccc------------Ccc
Confidence 0123444544432222345678999999999999999987654433 3221 11122110 012
Q ss_pred cccceEEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEE
Q 013385 306 TLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTA 385 (444)
Q Consensus 306 ~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~ 385 (444)
..++.++.++.|++|||+|+|.+.. .||||||||+||||++|.|.|+++++..+|+.||++|||+.|+++||++
T Consensus 414 ~~~~~v~~~~~~~~VeiVi~n~~~~------~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~v 487 (552)
T PLN02354 414 KIQPNVLNITFRTFVEIIFENHEKS------MQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAA 487 (552)
T ss_pred ccCCeeEEcCCCCEEEEEEeCCCCC------CCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEE
Confidence 2345678999999999999998655 8999999999999999999998766667999999999999999999999
Q ss_pred EEEEcCCceeeEEeccChhhHhcccEEEE--eccccc---ccCCCCCCcccCcccc
Q 013385 386 LRFVADNPGAWAFHCHIEPHFHIGMGVVL--ALGVET---VGNIPNQALACGLTGK 436 (444)
Q Consensus 386 irf~adnpG~w~~HCHi~~H~~~GM~~~~--~~~~~~---~~~~P~~~~~C~~~~~ 436 (444)
|||+|||||+|+|||||++|+..||.++| .|+++. ++++|++.+.|+..++
T Consensus 488 IRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C~~~~~ 543 (552)
T PLN02354 488 ILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLCGKVKG 543 (552)
T ss_pred EEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCccccccccccC
Confidence 99999999999999999989999888888 455554 4458999999986554
No 9
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=2.2e-74 Score=595.47 Aligned_cols=400 Identities=33% Similarity=0.558 Sum_probs=292.0
Q ss_pred ccceeeeEEEECCCCCCCCCC-CCcceEEEEeecCCCCHHHHHhhhcCCCCCcCCCCCceEEcCCCCC--CCcccccccC
Q 013385 4 SAGLYGSLIVDVADGEKEPFH-YDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQF--NCSLAAHFSN 80 (444)
Q Consensus 4 ~dGL~G~lIV~~~~~~~~p~~-~D~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~--~c~~~~~~~~ 80 (444)
.+||+|+|||+++++.+.|++ +|+|++|+|+||+|+...+++..+...+.. +.++|++|||||... +|..
T Consensus 111 ~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~-~~~~d~~liNG~~~~~~~~~~------ 183 (539)
T TIGR03389 111 RATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTGGA-PNVSDAYTINGHPGPLYNCSS------ 183 (539)
T ss_pred hccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcCCC-CCccceEEECCCcCCCCCCCC------
Confidence 369999999999876445553 489999999999999988877665554433 557899999999753 3321
Q ss_pred CCccccccCCCCCCCceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEe
Q 013385 81 GSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLT 160 (444)
Q Consensus 81 ~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~ 160 (444)
....+++|++||+|||||||+|+.+.+.|+|+||+|+|||+||.+++|+.+++|.|++||||||+|+
T Consensus 184 -------------~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~~GqRydVlv~ 250 (539)
T TIGR03389 184 -------------KDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIGPGQTTNVLLT 250 (539)
T ss_pred -------------CCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEecCCCEEEEEEE
Confidence 2335899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEecCCCC---CCCCeEEEEEEcCCCCCCCCCCCCCCCCCCCCCccccccccccccCC-C-C-CCCCC
Q 013385 161 TNQDPSYNYWISAGVRGRKP---ATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALM-G-S-PKPPT 234 (444)
Q Consensus 161 ~~~~~~g~y~i~~~~~~~~~---~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~-~-~-~~~p~ 234 (444)
+++ ++|+||||+.....|. ......|||+|.++.....+. .+..+.+.+..........+..+. + . ...|.
T Consensus 251 a~~-~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~ 327 (539)
T TIGR03389 251 ADQ-SPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPI--LPTLPAYNDTAAATNFSNKLRSLNSAQYPANVPV 327 (539)
T ss_pred CCC-CCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCC--CCCCCCCCchhhhhHHHhhcccccccCCCCCCCC
Confidence 998 5689999998754442 245689999998643321111 111122222111111111122211 1 1 12233
Q ss_pred ccceEEEEEecccc-----------cCCeEEEEecCccccCCCCCccccccccCCccCC---CCCCCCCCCCCccccCCC
Q 013385 235 NFHRRLTLLNTQNT-----------INGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFD---QNGPPENFSNEYDVMKPP 300 (444)
Q Consensus 235 ~~~~~~~~~~~~~~-----------~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~~ 300 (444)
.+++++.+.+..+. ......|+|||++|..|..|+|.+...++.+.+. ++.+|..|+ ++....+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~ 405 (539)
T TIGR03389 328 TIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFN--YTGTNLP 405 (539)
T ss_pred CCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCcccc--CCCCCcc
Confidence 45666555443211 1224679999999999999998776655443221 223344342 1100001
Q ss_pred CCCCccccceEEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCch-hhcccCCCCCCccceEEeC
Q 013385 301 VNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE-DEKKFNLKNPPLKNTAVIF 379 (444)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~-~~~~~n~~~p~~rDTv~v~ 379 (444)
.+.....++.++.++.|++|||+|+|.+.+ ....||||||||+||||++|.|.|+.. +...+|+.||++|||+.|+
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~---~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp 482 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSIL---GSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVP 482 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcC---CCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcC
Confidence 111123356789999999999999997532 122899999999999999999999754 3447899999999999999
Q ss_pred CCcEEEEEEEcCCceeeEEeccChhhHhcccEEEEecc-----cccccCCCCCCccc
Q 013385 380 PYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALG-----VETVGNIPNQALAC 431 (444)
Q Consensus 380 ~~g~v~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~-----~~~~~~~P~~~~~C 431 (444)
++||++|||+|||||.|+|||||+||++.||+++|.+. .++++++|+.++.|
T Consensus 483 ~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 483 TGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred CCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 99999999999999999999999999999999999653 45689999999999
No 10
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=1.9e-74 Score=589.12 Aligned_cols=387 Identities=29% Similarity=0.518 Sum_probs=280.2
Q ss_pred CccccceeeeEEEECCCCCCCCC-CCCcceEEEEeecCCCCHHHHHhhhcCCCCCcCCCCCceEEcCCCCCCCccccccc
Q 013385 1 MQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFS 79 (444)
Q Consensus 1 ~Q~~dGL~G~lIV~~~~~~~~p~-~~D~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~c~~~~~~~ 79 (444)
.|+++||+|+|||+++++++.|+ .+|.|++|+|+||+|.+...+...+. .+.. .+++|++||||++..
T Consensus 131 ~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~-~g~~-~~~~d~~liNG~~~~--------- 199 (545)
T PLN02168 131 LQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRASLD-NGHS-LPNPDGILFNGRGPE--------- 199 (545)
T ss_pred hhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHhhhh-cCCC-CCCCCEEEEeccCCC---------
Confidence 49999999999999987655565 35899999999999988655443332 2222 457899999999853
Q ss_pred CCCccccccCCCCCCCceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEE
Q 013385 80 NGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLL 159 (444)
Q Consensus 80 ~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v 159 (444)
.++++|++||+|||||||+|+.+.+.|+|+||+|+|||+||.+++|+.++.|.|++||||||+|
T Consensus 200 ----------------~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydvlv 263 (545)
T PLN02168 200 ----------------ETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSYSVLV 263 (545)
T ss_pred ----------------cceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEEEcCCceEEEEE
Confidence 0279999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC---cceEEEEEecCCCCCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCCCCccccccccccc-cCCC-C-CCCC
Q 013385 160 TTNQDPS---YNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIF-ALMG-S-PKPP 233 (444)
Q Consensus 160 ~~~~~~~---g~y~i~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~-~~~~-~-~~~p 233 (444)
++++.+. ++||||+.....+ ....+.|||+|.++.... ..+.|..|...+..........+. .+.+ . ...|
T Consensus 264 ~a~~~~~g~~~~Y~i~a~~~~~~-~~~~~~ail~Y~~~~~~~--~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p 340 (545)
T PLN02168 264 TAKTDPVGIYRSYYIVATARFTD-AYLGGVALIRYPNSPLDP--VGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNP 340 (545)
T ss_pred EcCCCCCCCcceEEEEEEecccC-CCcceEEEEEECCCCCCC--CCCCCCCCcccccccccchhhhhhhcCCCCCCCCCC
Confidence 9987443 4899999975433 346788999998653321 112222333333322211111111 1111 0 1111
Q ss_pred C--------ccceEEEEEecccccCCeEEEEecCccccCCCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCCc
Q 013385 234 T--------NFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANT 305 (444)
Q Consensus 234 ~--------~~~~~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 305 (444)
. ..++++.+........+...|+|||++|..|.+|+|.+..+++.+.+.... | . ..+.+...
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~----~----~--~~p~~~~~ 410 (545)
T PLN02168 341 QGSYHYGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGM----F----P--VYPSNKTP 410 (545)
T ss_pred cccccccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCC----C----c--cCCCcCcc
Confidence 1 123444333221112356789999999999999998766554332221100 0 0 00001111
Q ss_pred cccceEEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEE
Q 013385 306 TLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTA 385 (444)
Q Consensus 306 ~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~ 385 (444)
..++.++.++.|++|||+|+|.... .||||||||+||||++|.|.|++..+..+|+.||++|||+.|+++||++
T Consensus 411 ~~~~~v~~~~~~~~VeiViqn~~~~------~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~v 484 (545)
T PLN02168 411 TLGTSVVDIHYKDFYHIVFQNPLFS------LESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTA 484 (545)
T ss_pred ccCceEEEecCCCEEEEEEeCCCCC------CCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEE
Confidence 1235678999999999999997654 8999999999999999999998665567999999999999999999999
Q ss_pred EEEEcCCceeeEEeccChhhHhcccEEEEec------c-----cccccCCCCCCcccCc
Q 013385 386 LRFVADNPGAWAFHCHIEPHFHIGMGVVLAL------G-----VETVGNIPNQALACGL 433 (444)
Q Consensus 386 irf~adnpG~w~~HCHi~~H~~~GM~~~~~~------~-----~~~~~~~P~~~~~C~~ 433 (444)
|||+|||||.|+|||||++|+..||.++|++ + .++++++|+++++||.
T Consensus 485 IRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~cg~ 543 (545)
T PLN02168 485 ILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRCGK 543 (545)
T ss_pred EEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccccCCChhhccccc
Confidence 9999999999999999976666666666632 2 2456779999999973
No 11
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=1.6e-69 Score=557.23 Aligned_cols=389 Identities=30% Similarity=0.564 Sum_probs=278.6
Q ss_pred CccccceeeeEEEECCCCCCCCCCCCcceEEEEeecCCCCHHHHHhhhcCCCCCcCCCCCceEEcCCCCCCCcccccccC
Q 013385 1 MQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSN 80 (444)
Q Consensus 1 ~Q~~dGL~G~lIV~~~~~~~~p~~~D~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~c~~~~~~~~ 80 (444)
+|+. ||+|+||||++++ .|+.||+|++|+|+||+|+...++...+......+..+++++|||||+.+.|...
T Consensus 116 ~Q~~-~l~G~lIV~~~~~--~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~----- 187 (538)
T TIGR03390 116 FQAV-TAFGPLIVEDCEP--PPYKYDDERILLVSDFFSATDEEIEQGLLSTPFTWSGETEAVLLNGKSGNKSFYA----- 187 (538)
T ss_pred hhhh-cceeEEEEccCCc--cCCCccCcEEEEEeCCCCCCHHHHHhhhhccCCccCCCCceEEECCccccccccc-----
Confidence 4776 5999999998854 4688999999999999999988876655544433456789999999987644210
Q ss_pred CCccccccCCCCCCCceEEEEcCCCeEEEEEEecCcceeEEEEEcCcc-eEEEEeCCccceeeEeeeEEecCCceEEEEE
Q 013385 81 GSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHK-MVVVEADGNYVQPFEVDDMDIYSGESYSVLL 159 (444)
Q Consensus 81 ~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~-~~via~DG~~v~p~~v~~~~i~~GeR~dV~v 159 (444)
.+ +....|..++++|++||+|||||||+|+.+.+.|+|++|+ |+|||+||++++|+.++.|.|++||||||+|
T Consensus 188 ----~~--~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~v~~l~l~~GqRydVlv 261 (538)
T TIGR03390 188 ----QI--NPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAKIDHLQLGGGQRYSVLF 261 (538)
T ss_pred ----cc--cCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceEeCeEEEccCCEEEEEE
Confidence 00 1122445678999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ecCCCC------CcceEEEEEecCCCCCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCCCC-ccccccccccccCCCC--C
Q 013385 160 TTNQDP------SYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDY-DHSKSFSNKIFALMGS--P 230 (444)
Q Consensus 160 ~~~~~~------~g~y~i~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~-~~~~~~~~~~~~~~~~--~ 230 (444)
++++.+ +++||||+.....+ +.....|||+|.++.....+. .|..+..... .........+..+.+. +
T Consensus 262 ~~~~~~~~~~~~~~~Y~ir~~~~~~~-~~~~~~aiL~Y~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~l~pl~~~~~~ 338 (538)
T TIGR03390 262 KAKTEDELCGGDKRQYFIQFETRDRP-KVYRGYAVLRYRSDKASKLPS--VPETPPLPLPNSTYDWLEYELEPLSEENNQ 338 (538)
T ss_pred ECCCccccccCCCCcEEEEEeecCCC-CcceEEEEEEeCCCCCCCCCC--CCCCCCCCccCcchhhhheeeEecCccccC
Confidence 999742 48999999875543 345679999997543222111 1111111100 0000001122221110 1
Q ss_pred --CCCCccceEEEEEecccc--cCCeEEEEecCccccC--CCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCC
Q 013385 231 --KPPTNFHRRLTLLNTQNT--INGFTKWAINNVSLTL--PPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNAN 304 (444)
Q Consensus 231 --~~p~~~~~~~~~~~~~~~--~~~~~~~~iNg~~~~~--p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 304 (444)
+++...++++.+...+.. .++..+|.|||++|.. |..|+|.....+... ..++ + +. ......
T Consensus 339 ~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~----~~~~--~----~~--~~~~~~ 406 (538)
T TIGR03390 339 DFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLP----ATPN--Y----TA--ALANYG 406 (538)
T ss_pred CCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCC----cCCC--c----cc--ccccCC
Confidence 223456777777766532 2456789999999986 788988766533210 0000 1 00 000000
Q ss_pred ccccceEEEccCCCEEEEEEEeCCcCCC--CCCCCCceeecccceEEEeecCCCCCch-hhcccCCCCCCccceEEeC--
Q 013385 305 TTLGSGVYMLGLNTTVDVILQNANAIRP--NLSEIHPWHLHGHDFWVLGRGEGKFTKE-DEKKFNLKNPPLKNTAVIF-- 379 (444)
Q Consensus 305 ~~~~~~~~~~~~g~~v~~vl~N~~~~~~--~~~~~HP~HlHG~~F~Vl~~g~g~~~~~-~~~~~n~~~p~~rDTv~v~-- 379 (444)
....+.++.++.|++|||+|+|.....+ .....||||||||+||||++|.|.|++. +...+|+.||++|||+.|+
T Consensus 407 ~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~ 486 (538)
T TIGR03390 407 FDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRY 486 (538)
T ss_pred cCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccc
Confidence 1123446889999999999999742100 0123899999999999999999999864 3456788999999999996
Q ss_pred --------CCcEEEEEEEcCCceeeEEeccChhhHhcccEEEEeccc
Q 013385 380 --------PYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGV 418 (444)
Q Consensus 380 --------~~g~v~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~ 418 (444)
++||++|||++||||.|+|||||+||+..||+++|.+..
T Consensus 487 ~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~ 533 (538)
T TIGR03390 487 AVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGD 533 (538)
T ss_pred cccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCC
Confidence 789999999999999999999999999999999998654
No 12
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6e-69 Score=544.46 Aligned_cols=400 Identities=36% Similarity=0.605 Sum_probs=304.9
Q ss_pred CccccceeeeEEEECCCCCCCCCC-CCcceEEEEeecCCC-CHHHHHhhhcCCCCCcCCCCCceEEcCCCCCCCcccccc
Q 013385 1 MQRSAGLYGSLIVDVADGEKEPFH-YDGEFNLLLSDWWHR-SVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHF 78 (444)
Q Consensus 1 ~Q~~dGL~G~lIV~~~~~~~~p~~-~D~e~~l~l~Dw~~~-~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~c~~~~~~ 78 (444)
+|+++|++|+|||+++...+.|++ +|+|++|+|+||+++ ...++...+...+.. +..+|.++|||++.+ . |
T Consensus 133 ~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~-p~~~D~~~iNg~~g~---~---~ 205 (563)
T KOG1263|consen 133 WQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKNLKNFLDRTGAL-PNPSDGVLINGRSGF---L---Y 205 (563)
T ss_pred cccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHHHHHhhccCCCC-CCCCCceEECCCCCc---c---c
Confidence 699999999999999987666777 499999999999996 766666655555443 445999999999864 1 1
Q ss_pred cCCCccccccCCCCCCCceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEE
Q 013385 79 SNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVL 158 (444)
Q Consensus 79 ~~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~ 158 (444)
.| .++++|++||+|||||||+|....+.|+|++|+|+||++||.+++|..+++|.|.|||||||+
T Consensus 206 --------------~~-~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~~l~i~~GQ~~~vL 270 (563)
T KOG1263|consen 206 --------------NC-TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTDSLDIHPGQTYSVL 270 (563)
T ss_pred --------------Cc-eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeeeeceEEEcCCcEEEEE
Confidence 12 358999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCcceEEEEEecCCCC---CCCCeEEEEEEcCCCCCCCCC-CCCCCCCCCCCCccccccccccccCCC---CCC
Q 013385 159 LTTNQDPSYNYWISAGVRGRKP---ATPPALTLLNYHPTSASKIPL-SPPPITPRWDDYDHSKSFSNKIFALMG---SPK 231 (444)
Q Consensus 159 v~~~~~~~g~y~i~~~~~~~~~---~~~~~~ail~y~~~~~~~~~~-~~~p~~p~~~~~~~~~~~~~~~~~~~~---~~~ 231 (444)
|++++. +++|||++.....+. ......++|+|.+........ ...+..|...+...+..+...++.... ..+
T Consensus 271 vtadq~-~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~ 349 (563)
T KOG1263|consen 271 LTADQS-PGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARP 349 (563)
T ss_pred EeCCCC-CCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccccccccCccc
Confidence 999994 569999998865542 156788999998622211111 111223333344444444444443322 122
Q ss_pred CCCccceEEEEE--------ecccccCCeEEEEecCccccCCCCCccccccccCCc-cCCC---CCCCCCCCCCccccCC
Q 013385 232 PPTNFHRRLTLL--------NTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKD-AFDQ---NGPPENFSNEYDVMKP 299 (444)
Q Consensus 232 ~p~~~~~~~~~~--------~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~-~~~~---~~~p~~~~~~~~~~~~ 299 (444)
.|.+.++...+. ......+++..++||+.+|..|.+|.+.+.++...+ .+.. ..||..+ ++.
T Consensus 350 ~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~--~~~---- 423 (563)
T KOG1263|consen 350 VPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKF--DYT---- 423 (563)
T ss_pred CCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCcccc--CCc----
Confidence 344444333222 222234567899999999999999988766655443 2211 2222211 111
Q ss_pred CCCCCccccceEEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCch-hh-cccCCCCCCccceEE
Q 013385 300 PVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE-DE-KKFNLKNPPLKNTAV 377 (444)
Q Consensus 300 ~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~-~~-~~~n~~~p~~rDTv~ 377 (444)
.++.++.++.++++++||++|+|.+.. ....||||||||+||||++|.|+|++. ++ ..+|+.+|+.||||.
T Consensus 424 ----~~~~~t~v~~~~~~~~veIVlqN~~~~---~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~ 496 (563)
T KOG1263|consen 424 ----GPTLGTSVMKLEFNSFVEIVLQNTSTG---TQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQ 496 (563)
T ss_pred ----cccccceEEEeecCCEEEEEEeCCccc---cCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEE
Confidence 135778899999999999999998765 233799999999999999999999984 34 789999999999999
Q ss_pred eCCCcEEEEEEEcCCceeeEEeccChhhHhcccEEEEeccccc-----ccCCCCCCcccCcccc
Q 013385 378 IFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVET-----VGNIPNQALACGLTGK 436 (444)
Q Consensus 378 v~~~g~v~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~~~-----~~~~P~~~~~C~~~~~ 436 (444)
|+||||++|||.|||||.|+||||+++|+..||.++|.+..+. +..+|.+.+.||.-+.
T Consensus 497 V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~cg~~~~ 560 (563)
T KOG1263|consen 497 VPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKCGRASG 560 (563)
T ss_pred eCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccccccCC
Confidence 9999999999999999999999999999999999999877754 3469999999998764
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=6e-55 Score=448.71 Aligned_cols=319 Identities=27% Similarity=0.376 Sum_probs=228.9
Q ss_pred CccccceeeeEEEECCCCCCCCCCCCcceEEEEeecCCCCHHHHHhhhcCCCCCcC------------------------
Q 013385 1 MQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWI------------------------ 56 (444)
Q Consensus 1 ~Q~~dGL~G~lIV~~~~~~~~p~~~D~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~------------------------ 56 (444)
+|+++||+|+|||+++++ +|+.||+|++|+|+||++....+++..+........
T Consensus 148 ~q~~~GL~G~lIV~~~~~--~p~~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 225 (587)
T TIGR01480 148 FQEQAGLYGPLIIDPAEP--DPVRADREHVVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTVADFFRDVRNDGLKQTLAD 225 (587)
T ss_pred hHhhccceEEEEECCCcc--ccCCCCceEEEEeeecccCCHHHHHHhhhcccccccccccchhhhhhhhccccccccccc
Confidence 488999999999998754 578899999999999999988877665542111000
Q ss_pred ------------------CCCCceEEcCCCCCCCcccccccCCCccccccCCCCCCCceEEEEcCCCeEEEEEEecCcce
Q 013385 57 ------------------GEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALA 118 (444)
Q Consensus 57 ------------------~~~d~~liNG~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~ 118 (444)
.....+||||+.. ...+++.+++|++|||||||+|+.+
T Consensus 226 ~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~------------------------~~~~~~~v~~G~rvRLR~INas~~~ 281 (587)
T TIGR01480 226 RKMWGQMRMTPTDLADVNGSTYTYLMNGTTP------------------------AGNWTGLFRPGEKVRLRFINGSAMT 281 (587)
T ss_pred cccccccccCCcccccccCccceEEEcCccC------------------------CCCceEEECCCCEEEEEEEecCCCc
Confidence 0011244555432 2235789999999999999999999
Q ss_pred eEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEEEecCCCCCCCCeEEEEEEcCCCCCC
Q 013385 119 SLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASK 198 (444)
Q Consensus 119 ~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~~~~~~~~~~~~~~ail~y~~~~~~~ 198 (444)
.|.|+|+||+|+|||+||++|+|+.++.|.|++||||||||++.+ .|.|+|++...+. .....++|++.......
T Consensus 282 ~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~--~g~~~i~a~~~~~---~~~~~~~l~~~~~~~~~ 356 (587)
T TIGR01480 282 YFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTG--DDAFTIFAQDSDR---TGYARGTLAVRLGLTAP 356 (587)
T ss_pred eEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCC--CceEEEEEEecCC---CceEEEEEecCCCCCCC
Confidence 999999999999999999999999999999999999999999875 4789999877543 34677888876431111
Q ss_pred CCCCCCCCCCCCCCCcc----------------------c-------------c--------------------------
Q 013385 199 IPLSPPPITPRWDDYDH----------------------S-------------K-------------------------- 217 (444)
Q Consensus 199 ~~~~~~p~~p~~~~~~~----------------------~-------------~-------------------------- 217 (444)
.++..........++.. . .
T Consensus 357 ~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (587)
T TIGR01480 357 VPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPM 436 (587)
T ss_pred CCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCcccccCCccccccccCcc
Confidence 11111100000000000 0 0
Q ss_pred -----------------ccccccccCCCCCCCCCccceEEEEEecccccCCeEEEEecCccccCCCCCccccccccCCcc
Q 013385 218 -----------------SFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDA 280 (444)
Q Consensus 218 -----------------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~ 280 (444)
.....|+...+ ..++..+++++.+..+.+. ....|+|||..|..
T Consensus 437 ~~~~~~~~~~~~~~~~~~~y~~l~~~~~-~~~~~~p~r~~~~~L~g~m--~~~~wtiNG~~~~~---------------- 497 (587)
T TIGR01480 437 DRMDDPGIGLRDNGRRVLTYADLHSLFP-PPDGRAPGREIELHLTGNM--ERFAWSFDGEAFGL---------------- 497 (587)
T ss_pred cccCCCCcccccCCcceeehhhcccccc-ccCcCCCCceEEEEEcCCC--ceeEEEECCccCCC----------------
Confidence 00000111111 0112245666666654331 34569999987631
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCccccceEEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCch
Q 013385 281 FDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE 360 (444)
Q Consensus 281 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~ 360 (444)
.+ .+.++.|++|+|.|.|.+.+ .||||||||.|+|+..+ |.+
T Consensus 498 ----~~------------------------pl~v~~Gervri~l~N~t~~------~HpmHlHG~~f~v~~~~-G~~--- 539 (587)
T TIGR01480 498 ----KT------------------------PLRFNYGERLRVVLVNDTMM------AHPIHLHGMWSELEDGQ-GEF--- 539 (587)
T ss_pred ----CC------------------------ceEecCCCEEEEEEECCCCC------CcceeEcCceeeeecCC-Ccc---
Confidence 00 16799999999999999887 99999999999998753 433
Q ss_pred hhcccCCCCCCccceEEeCCCcEEEEEEEcCCceeeEEeccChhhHhcccEEEEec
Q 013385 361 DEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL 416 (444)
Q Consensus 361 ~~~~~n~~~p~~rDTv~v~~~g~v~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~ 416 (444)
+.++||+.|+||+++.++|++||||.|+||||++.|++.|||..|.+
T Consensus 540 ---------~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 540 ---------QVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred ---------cccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 36899999999999999999999999999999999999999999865
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=3.8e-51 Score=417.64 Aligned_cols=311 Identities=22% Similarity=0.286 Sum_probs=207.1
Q ss_pred CccccceeeeEEEECCCCCCC--CCCCC-cceEEEEeecCCCCHHHHHhhhcCCCCCcCCCCCceEEcCCCCCCCccccc
Q 013385 1 MQRSAGLYGSLIVDVADGEKE--PFHYD-GEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAH 77 (444)
Q Consensus 1 ~Q~~dGL~G~lIV~~~~~~~~--p~~~D-~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~c~~~~~ 77 (444)
.|+.+||+|+|||+++++... |..|+ +|++|+|+||+++..+++..............+|.+||||+..+
T Consensus 151 ~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~lVNG~~~p------- 223 (523)
T PRK10965 151 RQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYP------- 223 (523)
T ss_pred HHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceeccccccccccCccCCeEEECCcccc-------
Confidence 488999999999999876432 33453 68999999999987665432111111111346799999999765
Q ss_pred ccCCCccccccCCCCCCCceEEEEcCCCeEEEEEEecCcceeEEEEE-cCcceEEEEeCCccc-eeeEeeeEEecCCceE
Q 013385 78 FSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAV-KNHKMVVVEADGNYV-QPFEVDDMDIYSGESY 155 (444)
Q Consensus 78 ~~~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i-~~h~~~via~DG~~v-~p~~v~~~~i~~GeR~ 155 (444)
.+.+ ++++|||||||+|+.+.|+|++ ++|+|+|||+||+++ +|+.++.|.|+|||||
T Consensus 224 --------------------~~~v-~~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lapGeR~ 282 (523)
T PRK10965 224 --------------------QHAA-PRGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPILMGERF 282 (523)
T ss_pred --------------------eeec-CCCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEECccceE
Confidence 4556 4679999999999999999998 899999999999987 8999999999999999
Q ss_pred EEEEecCCCCCcceEEEEEecCCCC----CCCCeEEEEEEcCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCC
Q 013385 156 SVLLTTNQDPSYNYWISAGVRGRKP----ATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPK 231 (444)
Q Consensus 156 dV~v~~~~~~~g~y~i~~~~~~~~~----~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~ 231 (444)
||+|++++ +++|++.+....... .......++++...... .....|. .+....+.+.
T Consensus 283 dvlv~~~~--~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~P~---------------~l~~~~~~~~ 343 (523)
T PRK10965 283 EVLVDTSD--GKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLIS--ASGTLPD---------------SLASLPALPS 343 (523)
T ss_pred EEEEEcCC--CceEEEEEecccCcccccccCCCceeEEEEeccCcC--CCCcCCh---------------hhccCCCCCc
Confidence 99999986 578998876432211 11113455555432111 0011110 0000000000
Q ss_pred CCCccceEEEEEeccc-----------cc--------------------------C-----C-----eEEEEecCccccC
Q 013385 232 PPTNFHRRLTLLNTQN-----------TI--------------------------N-----G-----FTKWAINNVSLTL 264 (444)
Q Consensus 232 ~p~~~~~~~~~~~~~~-----------~~--------------------------~-----~-----~~~~~iNg~~~~~ 264 (444)
......+++.+.+... .. . + ...|+|||++|..
T Consensus 344 ~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~ 423 (523)
T PRK10965 344 LEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDM 423 (523)
T ss_pred ccccceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECCC
Confidence 0001122222221000 00 0 0 0114666665531
Q ss_pred CCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCCccccceEEEccCCCEEEEEEEeCCc-CCCCCCCCCceeec
Q 013385 265 PPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANA-IRPNLSEIHPWHLH 343 (444)
Q Consensus 265 p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~-~~~~~~~~HP~HlH 343 (444)
.. ..+.++.|++++|+|.|.+. + .||||||
T Consensus 424 -------------------~~------------------------~~~~~~~G~~e~w~i~N~~~~~------~Hp~HlH 454 (523)
T PRK10965 424 -------------------NK------------------------PMFAAKKGQYERWVISGVGDMM------LHPFHIH 454 (523)
T ss_pred -------------------CC------------------------cceecCCCCEEEEEEEeCCCCC------ccCeEEe
Confidence 00 12679999999999999874 5 8999999
Q ss_pred ccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEE----cCCceeeEEeccChhhHhcccEEEEec
Q 013385 344 GHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV----ADNPGAWAFHCHIEPHFHIGMGVVLAL 416 (444)
Q Consensus 344 G~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~----adnpG~w~~HCHi~~H~~~GM~~~~~~ 416 (444)
|++||||+++..... ...+.|||||.|++ +.+.|+++ ++++|.|+|||||++|+|.|||.+|.+
T Consensus 455 g~~F~Vl~~~g~~~~--------~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V 522 (523)
T PRK10965 455 GTQFRILSENGKPPA--------AHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 522 (523)
T ss_pred CcEEEEEEecCCCCC--------ccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEe
Confidence 999999999542211 13458999999987 55555444 457889999999999999999999965
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=7.6e-51 Score=411.98 Aligned_cols=299 Identities=17% Similarity=0.171 Sum_probs=204.6
Q ss_pred ccccceeeeEEEECCCCCCCC--CCCC-cceEEEEeecCCCCHHHHHhhhcCCCCCcCCCCCceEEcCCCCCCCcccccc
Q 013385 2 QRSAGLYGSLIVDVADGEKEP--FHYD-GEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHF 78 (444)
Q Consensus 2 Q~~dGL~G~lIV~~~~~~~~p--~~~D-~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~c~~~~~~ 78 (444)
|+.+||+|+|||+++.++..+ ..|+ .|++|+|+||+++..++........+ ...+|.+||||+..+
T Consensus 152 qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~~~~~~---g~~gd~~lvNG~~~p-------- 220 (471)
T PRK10883 152 HVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYNEPGSG---GFVGDTLLVNGVQSP-------- 220 (471)
T ss_pred hHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCccccccccC---CccCCeeEECCccCC--------
Confidence 889999999999998764333 3454 49999999999987554322111111 346899999999765
Q ss_pred cCCCccccccCCCCCCCceEEEEcCCCeEEEEEEecCcceeEEEEE-cCcceEEEEeCCccc-eeeEeeeEEecCCceEE
Q 013385 79 SNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAV-KNHKMVVVEADGNYV-QPFEVDDMDIYSGESYS 156 (444)
Q Consensus 79 ~~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i-~~h~~~via~DG~~v-~p~~v~~~~i~~GeR~d 156 (444)
.++|++| +|||||||+|+.+.|.|+| ++|+|+|||+||+++ +|+.++.|.|+||||||
T Consensus 221 -------------------~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR~d 280 (471)
T PRK10883 221 -------------------YVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGERRE 280 (471)
T ss_pred -------------------eEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCCeEE
Confidence 5889874 8999999999999999999 899999999998776 89999999999999999
Q ss_pred EEEecCCCCCcceEEEEEecCCCC----CC--C----CeEEEEEEcCCCCCCCCCCCCCCCCCCCCCccccccccccccC
Q 013385 157 VLLTTNQDPSYNYWISAGVRGRKP----AT--P----PALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFAL 226 (444)
Q Consensus 157 V~v~~~~~~~g~y~i~~~~~~~~~----~~--~----~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~ 226 (444)
|+|++++ ++.+.+.+....... .. . ....+++........... .. ....+...
T Consensus 281 vlVd~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~------~p~~l~~~ 343 (471)
T PRK10883 281 ILVDMSN--GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPLVT---------DN------LPMRLLPD 343 (471)
T ss_pred EEEECCC--CceEEEECCCccccccccccccCCccccccceeEEEEccccccCCC---------Cc------CChhhcCC
Confidence 9999976 445666552111000 00 0 011122222100000000 00 00011100
Q ss_pred CCCCCCCCccceEEEEEecccccCCeEEEEecCccccCCCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCCcc
Q 013385 227 MGSPKPPTNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTT 306 (444)
Q Consensus 227 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 306 (444)
...+....++..+.+.. ..|.|||.+|.... .
T Consensus 344 ---~~~~~~~~~~~~~~l~~------~~~~INg~~~~~~~-------------------~-------------------- 375 (471)
T PRK10883 344 ---EIMEGSPIRSREISLGD------DLPGINGALWDMNR-------------------I-------------------- 375 (471)
T ss_pred ---CCCCCCCcceEEEEecC------CcCccCCcccCCCc-------------------c--------------------
Confidence 11111223444444321 13789999874210 0
Q ss_pred ccceEEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEE
Q 013385 307 LGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTAL 386 (444)
Q Consensus 307 ~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~i 386 (444)
.+.++.|++++|+|.|. + .|||||||+.|||++++..... .....|||||.|+ +.+.|
T Consensus 376 ----~~~~~~g~~e~W~~~n~--~------~HP~HlHg~~FqVl~~~G~~~~--------~~~~gwkDTV~v~--~~v~i 433 (471)
T PRK10883 376 ----DVTAQQGTWERWTVRAD--M------PQAFHIEGVMFLIRNVNGAMPF--------PEDRGWKDTVWVD--GQVEL 433 (471)
T ss_pred ----eeecCCCCEEEEEEECC--C------CcCEeECCccEEEEEecCCCCC--------ccccCcCcEEEcC--CeEEE
Confidence 16789999999999885 4 8999999999999999543211 1123799999996 46999
Q ss_pred EEEcCCce----eeEEeccChhhHhcccEEEEeccc
Q 013385 387 RFVADNPG----AWAFHCHIEPHFHIGMGVVLALGV 418 (444)
Q Consensus 387 rf~adnpG----~w~~HCHi~~H~~~GM~~~~~~~~ 418 (444)
+++++++| .|||||||++|+|.|||.+|.+-+
T Consensus 434 ~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 434 LVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred EEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 99999887 899999999999999999998743
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.4e-42 Score=347.91 Aligned_cols=312 Identities=27% Similarity=0.342 Sum_probs=211.0
Q ss_pred ccccceeeeEEEECCCCCCCCCCCCcceEEEEeecCCCCHHHHHhhhcCCCCCcCCCCCceEEcCCCCCCCcccccccCC
Q 013385 2 QRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTLLINGRGQFNCSLAAHFSNG 81 (444)
Q Consensus 2 Q~~dGL~G~lIV~~~~~~~~p~~~D~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~c~~~~~~~~~ 81 (444)
|+.+||+|++||+++++ .|+.+|.+..+++++|................ ....+..+|||+..+
T Consensus 137 Q~~~Gl~G~~II~~~~~--~~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~vnG~~~p----------- 200 (451)
T COG2132 137 QVYDGLAGALIIEDENS--EPLGVDDEPVILQDDWLDEDGTDLYQEGPAMG---GFPGDTLLVNGAILP----------- 200 (451)
T ss_pred hhhcccceeEEEeCCCC--CCCCCCceEEEEEeeeecCCCCccccCCcccc---CCCCCeEEECCCccc-----------
Confidence 88999999999999965 56788999999999999887655544311111 346789999996543
Q ss_pred CccccccCCCCCCCceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEec
Q 013385 82 SAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTT 161 (444)
Q Consensus 82 ~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~ 161 (444)
+...++.+|||||+|++..+.+.+++.+++|+||++||.+++|..++.+.|+|||||||++++
T Consensus 201 -----------------~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~ 263 (451)
T COG2132 201 -----------------FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDM 263 (451)
T ss_pred -----------------eeecCCCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEc
Confidence 344456779999999998888899999999999999999998899999999999999999999
Q ss_pred CCCCCcceEEEEEecCCCCCCCCeEEEEEEcCCCC-CCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCccceEE
Q 013385 162 NQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSA-SKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRL 240 (444)
Q Consensus 162 ~~~~~g~y~i~~~~~~~~~~~~~~~ail~y~~~~~-~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 240 (444)
.. ++.+.+.+.. .... ....+......... ...........+.. +. ............ ...+....+...
T Consensus 264 ~~--~~~~~l~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~--~~~~~~~~~~~~-~~~~~~~~~~~~ 334 (451)
T COG2132 264 ND--GGAVTLTALG-EDMP--DTLKGFRAPNPILTPSYPVLNGRVGAPTG-DM--ADHAPVGLLVTI-LVEPGPNRDTDF 334 (451)
T ss_pred CC--CCeEEEEecc-ccCC--ceeeeeeccccccccccccccccccCCCc-ch--hhccccccchhh-cCCCcccccccc
Confidence 87 5667776654 1111 11111111110000 00000000000000 00 000000000000 000000111111
Q ss_pred EEEecccccCCeEEEEecCccccCCCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCCccccceEEEccCCCEE
Q 013385 241 TLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTV 320 (444)
Q Consensus 241 ~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v 320 (444)
.+.. ..+...|.+|+..|.. .. ..+.++.|+++
T Consensus 335 ~l~~----~~~~~~~~~n~~~~~~-------------------~~------------------------~~~~~~~G~~~ 367 (451)
T COG2132 335 HLIG----GIGGYVWAINGKAFDD-------------------NR------------------------VTLIAKAGTRE 367 (451)
T ss_pred hhhc----ccccccccccCccCCC-------------------Cc------------------------CceeecCCCEE
Confidence 1111 1123457777776531 00 12788999999
Q ss_pred EEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcCCceeeEEec
Q 013385 321 DVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHC 400 (444)
Q Consensus 321 ~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~adnpG~w~~HC 400 (444)
+|+|.|.+.+ .|||||||+.|+|++.+.... ...+.||||+.+.+++.++|+|.+++||.|+|||
T Consensus 368 ~~~i~n~~~~------~HP~HlHg~~F~v~~~~~~~~---------~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HC 432 (451)
T COG2132 368 RWVLTNDTPM------PHPFHLHGHFFQVLSGDAPAP---------GAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHC 432 (451)
T ss_pred EEEEECCCCC------ccCeEEcCceEEEEecCCCcc---------cccCccceEEEeCCCeEEEEEEeCCCCCceEEec
Confidence 9999998877 999999999999999861111 2456999999999999999999999999999999
Q ss_pred cChhhHhcccEEEEecc
Q 013385 401 HIEPHFHIGMGVVLALG 417 (444)
Q Consensus 401 Hi~~H~~~GM~~~~~~~ 417 (444)
|+++|++.|||..+.+.
T Consensus 433 H~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 433 HILEHEDNGMMGQFGVV 449 (451)
T ss_pred cchhHhhcCCeeEEEec
Confidence 99999999999998764
No 17
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=100.00 E-value=4.7e-33 Score=243.54 Aligned_cols=152 Identities=35% Similarity=0.663 Sum_probs=128.1
Q ss_pred cceEEEEeecCCCCHHHHHhhhcCCCC---CcCCCCCceEEcCCCCCCCcccccccCCCccccccCCCCCCCceEEEEcC
Q 013385 27 GEFNLLLSDWWHRSVHEQEVGLSSRPL---RWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQP 103 (444)
Q Consensus 27 ~e~~l~l~Dw~~~~~~~~~~~~~~~~~---~~~~~~d~~liNG~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~ 103 (444)
+|++|+|+||+|+...+++.++...+. .+++++|++||||+++++|.... ......+++.+++
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~--------------~~~~~~~~~~v~~ 66 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSAD--------------YTGGEPPVIKVKP 66 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTG--------------STTSTSGEEEEET
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCcccccccccc--------------ccccccceEEEcC
Confidence 489999999999999888877766532 24789999999999999887521 1245567999999
Q ss_pred CCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEEEecCCC---C
Q 013385 104 NKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRK---P 180 (444)
Q Consensus 104 g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~~~~~~~---~ 180 (444)
|++|||||||+|+.+.+.|+|+||+|+|||+||.+++|++++.|.|++||||||+|++++ ++|+|||++.....+ .
T Consensus 67 g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~-~~g~y~i~~~~~~~~~~~~ 145 (159)
T PF00394_consen 67 GERYRLRLINAGASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQ-PPGNYWIRASYQHDSINDP 145 (159)
T ss_dssp TTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECS-CSSEEEEEEEESSSSSHSH
T ss_pred CcEEEEEEEeccCCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCC-CCCeEEEEEecccCCCccC
Confidence 999999999999999999999999999999999999999999999999999999999988 689999999743332 2
Q ss_pred CCCCeEEEEEEcC
Q 013385 181 ATPPALTLLNYHP 193 (444)
Q Consensus 181 ~~~~~~ail~y~~ 193 (444)
....+.|+|+|.+
T Consensus 146 ~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 146 QNGNALAILRYDG 158 (159)
T ss_dssp GGGTTEEEEEETT
T ss_pred CCcEEEEEEEECC
Confidence 4677899999974
No 18
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.97 E-value=1.9e-31 Score=228.49 Aligned_cols=107 Identities=42% Similarity=0.826 Sum_probs=96.7
Q ss_pred ccceEEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEE
Q 013385 307 LGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTAL 386 (444)
Q Consensus 307 ~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~i 386 (444)
.++.++.++.|++++|+|+|.+.. .|||||||++|+|++++.+.+.......+++.+|.||||+.|+++++++|
T Consensus 31 ~~~~~~~~~~g~~v~~~l~N~~~~------~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i 104 (138)
T PF07731_consen 31 GNTPVIEVKNGDVVEIVLQNNGSM------PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVI 104 (138)
T ss_dssp STTSEEEEETTSEEEEEEEECTTS------SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEE
T ss_pred CCcceEEEeCCCEEEEEEECCCCC------ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEE
Confidence 445679999999999999998877 99999999999999998877655556678899999999999999999999
Q ss_pred EEEcCCceeeEEeccChhhHhcccEEEEecccc
Q 013385 387 RFVADNPGAWAFHCHIEPHFHIGMGVVLALGVE 419 (444)
Q Consensus 387 rf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~~ 419 (444)
||+++|||.|+||||+++|++.|||++|.+.++
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~~ 137 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGPQ 137 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECHH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcCC
Confidence 999999999999999999999999999998763
No 19
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.90 E-value=4.6e-24 Score=205.62 Aligned_cols=163 Identities=15% Similarity=0.097 Sum_probs=125.6
Q ss_pred ccccceeeeEEEECCCCCCCCCCCCcceEEEEeecCCCCHHHHHhhhcCCCC-CcCCCCCceEEcCCCCCCCcccccccC
Q 013385 2 QRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGLSSRPL-RWIGEPQTLLINGRGQFNCSLAAHFSN 80 (444)
Q Consensus 2 Q~~dGL~G~lIV~~~~~~~~p~~~D~e~~l~l~Dw~~~~~~~~~~~~~~~~~-~~~~~~d~~liNG~~~~~c~~~~~~~~ 80 (444)
|++.||+|+|||++++. .| .+|+|++|+++||+++........+..... ....+++.++|||+....+
T Consensus 133 q~~~Gl~G~liV~~~~~--~~-~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~-------- 201 (311)
T TIGR02376 133 HVVSGMNGAIMVLPREG--LP-EYDKEYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGALT-------- 201 (311)
T ss_pred HhhcCcceEEEeeccCC--Cc-CcceeEEEeeeeEeccccccccccccchHHHHhcCCCCEEEECCccCCCC--------
Confidence 78999999999998754 23 679999999999999764332111110000 0124678999999964300
Q ss_pred CCccccccCCCCCCCceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeE--eeeEEecCCceEEEE
Q 013385 81 GSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFE--VDDMDIYSGESYSVL 158 (444)
Q Consensus 81 ~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~--v~~~~i~~GeR~dV~ 158 (444)
+.+.+++|+++||||||++..+.+.|++.+|.+++|+.||.++.|.. ++.+.|+||||+||+
T Consensus 202 ----------------~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~ 265 (311)
T TIGR02376 202 ----------------GDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAAL 265 (311)
T ss_pred ----------------CCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCCCCCCcceEEECCCceEEEE
Confidence 13689999999999999999999999999999999999999997644 899999999999999
Q ss_pred EecCCCCCcceEEEEEecCCCCCCCCeEEEEEEcCC
Q 013385 159 LTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPT 194 (444)
Q Consensus 159 v~~~~~~~g~y~i~~~~~~~~~~~~~~~ail~y~~~ 194 (444)
|++++ +|.|++++...... ......|+|.|++.
T Consensus 266 v~~~~--pG~y~~~~~~~~~~-~~~g~~~~i~~~g~ 298 (311)
T TIGR02376 266 YTFEQ--PGVYAYVDHNLIEA-FEKGAAAQVKVEGA 298 (311)
T ss_pred EEeCC--CeEEEEECcHHHHH-HhCCCEEEEEECCC
Confidence 99997 68999998754322 13347899999753
No 20
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.64 E-value=5.5e-14 Score=135.78 Aligned_cols=231 Identities=16% Similarity=0.104 Sum_probs=140.9
Q ss_pred eEEEEcCCCeEEEEEEecCcc-eeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEEEe
Q 013385 97 QILHVQPNKTYRLRIASTTAL-ASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 175 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~~-~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~~~ 175 (444)
++|++++|+++++++.|.... ....++++++. +.||... ...|.|||++.+.+.+++ +|.||.+...
T Consensus 59 P~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t~ty~F~~~~--~Gty~YH~H~ 126 (311)
T TIGR02376 59 PLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGETATLRFKATR--PGAFVYHCAP 126 (311)
T ss_pred ceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCeEEEEEEcCC--CEEEEEEcCC
Confidence 479999999999999998632 34677777763 4677542 223899999999999875 7999998875
Q ss_pred cCC-CCC-CCCeEEEEEEcCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCccceEEEEEecccccCCeE
Q 013385 176 RGR-KPA-TPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFT 253 (444)
Q Consensus 176 ~~~-~~~-~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 253 (444)
... ..+ .....+.|...+... .+ .. +.. ....+.+..- .... ...................
T Consensus 127 ~~~~~~q~~~Gl~G~liV~~~~~-------~~---~~-d~e----~~l~l~d~~~-~~~~-~~~~~~~~~~~~~~~~~~~ 189 (311)
T TIGR02376 127 PGMVPWHVVSGMNGAIMVLPREG-------LP---EY-DKE----YYIGESDLYT-PKDE-GEGGAYEDDVAAMRTLTPT 189 (311)
T ss_pred CCchhHHhhcCcceEEEeeccCC-------Cc---Cc-cee----EEEeeeeEec-cccc-cccccccchHHHHhcCCCC
Confidence 321 111 112233444432110 00 00 000 0000000000 0000 0000000000000000112
Q ss_pred EEEecCccccCCCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCCccccceEEEccCCCEEEEEEEeCCcCCCC
Q 013385 254 KWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPN 333 (444)
Q Consensus 254 ~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~ 333 (444)
.+.|||+..... ..+.++.|++++|.|.|.+..
T Consensus 190 ~~~iNG~~~~~~--------------------------------------------~~~~v~~G~~~RlRiiNa~~~--- 222 (311)
T TIGR02376 190 HVVFNGAVGALT--------------------------------------------GDNALTAGVGERVLFVHSQPN--- 222 (311)
T ss_pred EEEECCccCCCC--------------------------------------------CCcccccCCcEEEEEEcCCCC---
Confidence 456777643110 014678999999999998653
Q ss_pred CCCCCceeecccceEEEeecCCCCCchhhcccCCCCCC--ccceEEeCCCcEEEEEEEcCCceeeEEeccChhhH-hccc
Q 013385 334 LSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPP--LKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHF-HIGM 410 (444)
Q Consensus 334 ~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~--~rDTv~v~~~g~v~irf~adnpG~w~~HCHi~~H~-~~GM 410 (444)
..+.||+||++|+++.. +|.+- ++. ..||+.|.||+.+.|.|+++.||.|++|||...|+ ..||
T Consensus 223 --~~~~~~~~g~~~~~v~~-DG~~~----------~~~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~ 289 (311)
T TIGR02376 223 --RDSRPHLIGGHGDYVWV-TGKFA----------NPPNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGA 289 (311)
T ss_pred --CCCCCeEecCCceEEEE-CCccc----------CCCCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCC
Confidence 16899999999999998 44432 233 37999999999999999999999999999999998 7799
Q ss_pred EEEEec
Q 013385 411 GVVLAL 416 (444)
Q Consensus 411 ~~~~~~ 416 (444)
+++|..
T Consensus 290 ~~~i~~ 295 (311)
T TIGR02376 290 AAQVKV 295 (311)
T ss_pred EEEEEE
Confidence 988854
No 21
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.05 E-value=2.3e-08 Score=104.29 Aligned_cols=227 Identities=17% Similarity=0.170 Sum_probs=132.4
Q ss_pred eEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEE---eCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEE
Q 013385 97 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVE---ADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA 173 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via---~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~ 173 (444)
++|+++.|+++++++.|--.. ..+|+-|-+.+.. .||.+ .+..-.|.||+.+...+++.+ ..|+||.+.
T Consensus 34 P~i~~~~GD~v~v~v~N~l~~---~tsiHwHGl~q~~~~~~DGv~----~vTq~pI~PG~s~~Y~f~~~~-~~GT~WYHs 105 (539)
T TIGR03389 34 PTLYAREGDTVIVNVTNNVQY---NVTIHWHGVRQLRNGWADGPA----YITQCPIQPGQSYVYNFTITG-QRGTLWWHA 105 (539)
T ss_pred CEEEEEcCCEEEEEEEeCCCC---CeeEecCCCCCCCCCCCCCCc----ccccCCcCCCCeEEEEEEecC-CCeeEEEec
Confidence 589999999999999998764 3355555554442 68875 344456899999999999863 479999998
Q ss_pred EecCCCCCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCccceEEEEEecccccCCeE
Q 013385 174 GVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFT 253 (444)
Q Consensus 174 ~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 253 (444)
...... ...+|-|...+.... +.|. +. .+... ...+.+..... ........ ...+. ......
T Consensus 106 H~~~~~---~Gl~G~lIV~~~~~~-----~~~~-~~-~d~e~----~l~l~Dw~~~~-~~~~~~~~--~~~~~-~~~~~d 167 (539)
T TIGR03389 106 HISWLR---ATVYGAIVILPKPGV-----PYPF-PK-PDREV----PIILGEWWNAD-VEAVINQA--NQTGG-APNVSD 167 (539)
T ss_pred Cchhhh---ccceEEEEEcCCCCC-----CCCC-CC-CCceE----EEEecccccCC-HHHHHHHH--HhcCC-CCCccc
Confidence 763211 123333333321110 0000 00 00000 00000000000 00000000 00000 000012
Q ss_pred EEEecCccccCCCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCCccccceEEEccCCCEEEEEEEeCCcCCCC
Q 013385 254 KWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPN 333 (444)
Q Consensus 254 ~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~ 333 (444)
.+.|||+...... . ......++.++.|++++|.|+|.+..
T Consensus 168 ~~liNG~~~~~~~--------------~-----------------------~~~~~~~i~v~~G~~~RlRlINa~~~--- 207 (539)
T TIGR03389 168 AYTINGHPGPLYN--------------C-----------------------SSKDTFKLTVEPGKTYLLRIINAALN--- 207 (539)
T ss_pred eEEECCCcCCCCC--------------C-----------------------CCCCceEEEECCCCEEEEEEEeccCC---
Confidence 3667776431100 0 00011258899999999999998754
Q ss_pred CCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcCC-ceeeEEeccC
Q 013385 334 LSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADN-PGAWAFHCHI 402 (444)
Q Consensus 334 ~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~adn-pG~w~~HCHi 402 (444)
..+-||++||.|+|++.. |.+ ..|...|++.|.+|+...|.++++. +|.|.++-+.
T Consensus 208 --~~~~~~idgH~~~VIa~D-G~~----------~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~ 264 (539)
T TIGR03389 208 --DELFFAIANHTLTVVEVD-ATY----------TKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARP 264 (539)
T ss_pred --ceEEEEECCCeEEEEEeC-Ccc----------cCceEeCeEEecCCCEEEEEEECCCCCceEEEEEec
Confidence 168899999999999985 433 3577889999999999999999986 8988876543
No 22
>PLN02604 oxidoreductase
Probab=99.04 E-value=2e-09 Score=112.57 Aligned_cols=89 Identities=24% Similarity=0.291 Sum_probs=68.6
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
+++++.|+.+++.+.|.... ..|+||+||... .+.. -.+ -........|+||+...++|++
T Consensus 56 ~i~~~~Gd~v~v~v~N~l~~-----~~~~iH~HG~~~--~~~~--~~D----------G~~~~tq~~i~pg~s~~y~f~~ 116 (566)
T PLN02604 56 TILAQQGDTVIVELKNSLLT-----ENVAIHWHGIRQ--IGTP--WFD----------GTEGVTQCPILPGETFTYEFVV 116 (566)
T ss_pred cEEEECCCEEEEEEEeCCCC-----CCCCEEeCCCCC--CCCc--ccc----------CCCccccCccCCCCeEEEEEEc
Confidence 38899999999999997532 179999999942 1110 000 0112244578999999999999
Q ss_pred CCceeeEEeccChhhHhcccEEEEeccc
Q 013385 391 DNPGAWAFHCHIEPHFHIGMGVVLALGV 418 (444)
Q Consensus 391 dnpG~w~~HCHi~~H~~~GM~~~~~~~~ 418 (444)
+++|.|.||||...|...||+..|.+.+
T Consensus 117 ~~~Gt~wyH~H~~~q~~~Gl~G~liV~~ 144 (566)
T PLN02604 117 DRPGTYLYHAHYGMQREAGLYGSIRVSL 144 (566)
T ss_pred CCCEEEEEeeCcHHHHhCCCeEEEEEEe
Confidence 9999999999999999999999986543
No 23
>PLN02835 oxidoreductase
Probab=98.99 E-value=5.1e-08 Score=101.10 Aligned_cols=197 Identities=13% Similarity=0.056 Sum_probs=123.0
Q ss_pred eEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEE---EeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEE
Q 013385 97 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVV---EADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA 173 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~vi---a~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~ 173 (444)
++|+++.|+++++++.|--.. ..+|+-|-+.+. .+||.+. ..-.|.||+.+...+++.+ ..|+||.+.
T Consensus 60 P~I~~~~GD~v~v~v~N~L~~---~ttiHWHGl~~~~~~~~DGv~~-----tQ~pI~PG~sf~Y~F~~~~-q~GT~WYHs 130 (539)
T PLN02835 60 PRLDVVTNDNIILNLINKLDQ---PFLLTWNGIKQRKNSWQDGVLG-----TNCPIPPNSNYTYKFQTKD-QIGTFTYFP 130 (539)
T ss_pred CCEEEECCCEEEEEEEeCCCC---CCcEEeCCcccCCCCCCCCCcc-----CcCCCCCCCcEEEEEEECC-CCEeEEEEe
Confidence 489999999999999999754 234555555443 4799653 2347999999999998753 479999998
Q ss_pred EecCCCCCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCccceEEEEEecccc-----
Q 013385 174 GVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNT----- 248 (444)
Q Consensus 174 ~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~----- 248 (444)
...........+.-|++ ... . .+.| .+. .++++.+....-.
T Consensus 131 H~~~q~~~Gl~G~lIV~-~~~-~-----~~~p-~~~--------------------------~d~e~~l~l~Dw~~~~~~ 176 (539)
T PLN02835 131 STLFHKAAGGFGAINVY-ERP-R-----IPIP-FPL--------------------------PDGDFTLLVGDWYKTSHK 176 (539)
T ss_pred CccchhcCcccceeEEe-CCC-C-----CCcC-CCC--------------------------CCceEEEEeeccccCCHH
Confidence 75322112223333332 211 0 0000 000 0111111110000
Q ss_pred -----------cCCeEEEEecCccccCCCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCCccccceEEEccCC
Q 013385 249 -----------INGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLN 317 (444)
Q Consensus 249 -----------~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 317 (444)
..-.....|||+.. ..+.++.|
T Consensus 177 ~~~~~~~~g~~~~~~d~~liNG~~~-----------------------------------------------~~~~v~~G 209 (539)
T PLN02835 177 TLQQRLDSGKVLPFPDGVLINGQTQ-----------------------------------------------STFSGDQG 209 (539)
T ss_pred HHHHHhhcCCCCCCCceEEEccccC-----------------------------------------------ceEEECCC
Confidence 00001133443311 13789999
Q ss_pred CEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcCC-ceee
Q 013385 318 TTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADN-PGAW 396 (444)
Q Consensus 318 ~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~adn-pG~w 396 (444)
++++|.|+|.+.. ..+-||+.||.|.|++.. |.+ ..|...|++.|.+|++.-|-++++. +|.|
T Consensus 210 ~~yRlRliNa~~~-----~~~~f~i~gH~~~VI~~D-G~~----------v~p~~~~~l~i~~GqRydvlv~~~~~~g~y 273 (539)
T PLN02835 210 KTYMFRISNVGLS-----TSLNFRIQGHTMKLVEVE-GSH----------TIQNIYDSLDVHVGQSVAVLVTLNQSPKDY 273 (539)
T ss_pred CEEEEEEEEcCCC-----ccEEEEECCCEEEEEEEC-Ccc----------CCCceeeEEEECcCceEEEEEEcCCCCCcE
Confidence 9999999998754 278999999999999984 433 2356789999999999999999875 6866
Q ss_pred EEe
Q 013385 397 AFH 399 (444)
Q Consensus 397 ~~H 399 (444)
.++
T Consensus 274 ~i~ 276 (539)
T PLN02835 274 YIV 276 (539)
T ss_pred EEE
Confidence 665
No 24
>PLN02792 oxidoreductase
Probab=98.87 E-value=2e-07 Score=96.51 Aligned_cols=217 Identities=13% Similarity=0.105 Sum_probs=126.7
Q ss_pred eEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEE---eCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEE
Q 013385 97 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVE---ADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA 173 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via---~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~ 173 (444)
++|+++.|+++++++.|--.. ..+|+-|-+.+.. +||.+. ..-.|.||+.|..-+++++ ..|+||.+.
T Consensus 47 P~I~~~~GD~v~V~v~N~L~~---~ttiHWHGl~q~~~~~~DGv~~-----tqcPI~PG~sftY~F~~~~-q~GT~WYHs 117 (536)
T PLN02792 47 PEIRSLTNDNLVINVHNDLDE---PFLLSWNGVHMRKNSYQDGVYG-----TTCPIPPGKNYTYDFQVKD-QVGSYFYFP 117 (536)
T ss_pred CcEEEECCCEEEEEEEeCCCC---CcCEeCCCcccCCCCccCCCCC-----CcCccCCCCcEEEEEEeCC-CccceEEec
Confidence 589999999999999998653 4466666666654 899643 2257899999999999863 479999998
Q ss_pred EecCCCCCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCccceEEEEEecccccCCeE
Q 013385 174 GVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFT 253 (444)
Q Consensus 174 ~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 253 (444)
+..........+..|| +... .. +.| .+.. +.+ ....+.+... . ........ +...........
T Consensus 118 H~~~q~~~Gl~G~liI-~~~~-~~-----~~p-~~~~-d~e----~~i~l~Dw~~-~-~~~~~~~~--~~~g~~~~~~~d 180 (536)
T PLN02792 118 SLAVQKAAGGYGSLRI-YSLP-RI-----PVP-FPEP-AGD----FTFLIGDWYR-R-NHTTLKKI--LDGGRKLPLMPD 180 (536)
T ss_pred CcchhhhcccccceEE-eCCc-cc-----CcC-CCcc-cce----eEEEeccccc-C-CHHHHHHH--hhccCcCCCCCC
Confidence 7532211112222222 2211 00 000 0000 000 0000000000 0 00000000 000000000011
Q ss_pred EEEecCccccCCCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCCccccceEEEccCCCEEEEEEEeCCcCCCC
Q 013385 254 KWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPN 333 (444)
Q Consensus 254 ~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~ 333 (444)
...|||+.... ...+.++.|++++|.|.|.+..
T Consensus 181 ~~liNG~~~~~--------------------------------------------~~~~~v~~Gk~yRlRliNa~~~--- 213 (536)
T PLN02792 181 GVMINGQGVSY--------------------------------------------VYSITVDKGKTYRFRISNVGLQ--- 213 (536)
T ss_pred EEEEeccCCCC--------------------------------------------cceEEECCCCEEEEEEEEcCCC---
Confidence 24455542100 0148899999999999998755
Q ss_pred CCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcCC-ceeeEEe
Q 013385 334 LSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADN-PGAWAFH 399 (444)
Q Consensus 334 ~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~adn-pG~w~~H 399 (444)
..+-||+.||.|.|++.. |.+ ..|...|++.|.+|++..|.++++. +|.|.+.
T Consensus 214 --~~~~f~i~gH~~tVI~~D-G~~----------v~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~ 267 (536)
T PLN02792 214 --TSLNFEILGHQLKLIEVE-GTH----------TVQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIV 267 (536)
T ss_pred --ceEEEEECCcEEEEEEeC-Ccc----------CCCcceeEEEEccCceEEEEEEcCCCCceEEEE
Confidence 278999999999999984 433 2456779999999999999999986 5776655
No 25
>PLN02354 copper ion binding / oxidoreductase
Probab=98.85 E-value=3.1e-07 Score=95.51 Aligned_cols=222 Identities=12% Similarity=0.068 Sum_probs=127.3
Q ss_pred eEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEE---EeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEE
Q 013385 97 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVV---EADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA 173 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~vi---a~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~ 173 (444)
++|+++.|+++++++.|.-.. ..+|+-|-+.+- .+||.+. ..-.|.||+.|...+++.+ ..|+||.+.
T Consensus 58 P~I~~~~GD~v~V~v~N~l~~---~ttiHWHGi~q~~~~~~DGv~~-----TQcpI~PG~sf~Y~F~~~~-q~GT~WYHs 128 (552)
T PLN02354 58 PNINSTSNNNIVINVFNNLDE---PFLLTWSGIQQRKNSWQDGVPG-----TNCPIPPGTNFTYHFQPKD-QIGSYFYYP 128 (552)
T ss_pred CcEEEeCCCEEEEEEEECCCC---CcccccccccCCCCcccCCCcC-----CcCCCCCCCcEEEEEEeCC-CCcceEEec
Confidence 589999999999999999743 334555544433 4899653 3458999999999999853 479999988
Q ss_pred EecCCCCCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCccceEEEEEecccccCCeE
Q 013385 174 GVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFT 253 (444)
Q Consensus 174 ~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 253 (444)
......... ..+-|...+.... +.+.. .+. .+. ...+.+..- .... ..... +... .......
T Consensus 129 H~~~Q~~~G--l~G~lII~~~~~~---~~p~~-~~d-~e~------~l~l~Dw~~-~~~~-~~~~~--~~~g-~~~~~~d 190 (552)
T PLN02354 129 STGMHRAAG--GFGGLRVNSRLLI---PVPYA-DPE-DDY------TVLIGDWYT-KSHT-ALKKF--LDSG-RTLGRPD 190 (552)
T ss_pred CccceecCC--ccceEEEcCCcCC---CCCCC-CcC-ceE------EEEeeeecc-CCHH-HHHHH--HhcC-CCCCCCC
Confidence 653211111 2222222211100 00000 000 000 000000000 0000 00000 0000 0000011
Q ss_pred EEEecCccccCCCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCCccccceEEEccCCCEEEEEEEeCCcCCCC
Q 013385 254 KWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPN 333 (444)
Q Consensus 254 ~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~ 333 (444)
...|||+.... + .....++.++.|++++|.|+|.+..
T Consensus 191 ~~liNG~~~~~----------------~------------------------~~~~~~~~v~~Gk~yRlRiINa~~~--- 227 (552)
T PLN02354 191 GVLINGKSGKG----------------D------------------------GKDEPLFTMKPGKTYRYRICNVGLK--- 227 (552)
T ss_pred eEEEeCCcCCC----------------C------------------------CCCceEEEECCCCEEEEEEEecCCC---
Confidence 24556543110 0 0011258899999999999998765
Q ss_pred CCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcCC-ceeeEEecc
Q 013385 334 LSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADN-PGAWAFHCH 401 (444)
Q Consensus 334 ~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~adn-pG~w~~HCH 401 (444)
...-||+.||.|.|++.. |.+ ..|...|++.|.+|++..|.++++. +|.|.+.-.
T Consensus 228 --~~~~f~IdgH~~tVIa~D-G~~----------v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~ 283 (552)
T PLN02354 228 --SSLNFRIQGHKMKLVEME-GSH----------VLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVAS 283 (552)
T ss_pred --ceEEEEECCceEEEEEeC-Ccc----------cCCcceeEEEEccCceEEEEEECCCCCCcEEEEEe
Confidence 278999999999999984 433 2456789999999999999999985 788777655
No 26
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.83 E-value=3e-07 Score=95.73 Aligned_cols=226 Identities=12% Similarity=0.096 Sum_probs=126.7
Q ss_pred eEEEEcCCCeEEEEEEecCcceeEEEEEcCcceE-EEEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEEEe
Q 013385 97 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMV-VVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 175 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~-via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~~~ 175 (444)
++|+++.|+++++++.|.-......|+.+|-.+. --.+||.+- +..-.|.||+.+...+++.....|+||.+...
T Consensus 39 P~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~----vTQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~ 114 (538)
T TIGR03390 39 PEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPL----ASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHV 114 (538)
T ss_pred CeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcc----cccCCCCCCCcEEEEEEecCCCCeeeEEecCC
Confidence 5899999999999999985433445555554432 234899874 23335889999999998754357999998875
Q ss_pred cCCCCCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCccceEEEEEecccccCCeEEE
Q 013385 176 RGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKW 255 (444)
Q Consensus 176 ~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 255 (444)
.. +.....|.|...+... .+ . .+ +.+ ....+.+..- .........+. .............
T Consensus 115 ~~---Q~~~l~G~lIV~~~~~-------~~-~-~~-d~e----~~l~l~Dw~~--~~~~~~~~~~~-~~~~~~~~~~d~~ 174 (538)
T TIGR03390 115 GF---QAVTAFGPLIVEDCEP-------PP-Y-KY-DDE----RILLVSDFFS--ATDEEIEQGLL-STPFTWSGETEAV 174 (538)
T ss_pred ch---hhhcceeEEEEccCCc-------cC-C-Cc-cCc----EEEEEeCCCC--CCHHHHHhhhh-ccCCccCCCCceE
Confidence 32 2112344444332100 00 0 00 000 0001111000 00000000000 0000000001235
Q ss_pred EecCccccCCCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCCccccceEEEccCCCEEEEEEEeCCcCCCCCC
Q 013385 256 AINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLS 335 (444)
Q Consensus 256 ~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~ 335 (444)
.|||+......... ..+ . ..| ....+.++.|++++|.|.|.+..
T Consensus 175 liNG~~~~~~~~~~-------~~~--------------------~---~~~-~~~~~~v~~G~~yRlRlINa~~~----- 218 (538)
T TIGR03390 175 LLNGKSGNKSFYAQ-------INP--------------------S---GSC-MLPVIDVEPGKTYRLRFIGATAL----- 218 (538)
T ss_pred EECCcccccccccc-------ccC--------------------C---CCC-cceEEEECCCCEEEEEEEccCCc-----
Confidence 66776321100000 000 0 000 01258899999999999998765
Q ss_pred CCCceeecccc-eEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcCCc
Q 013385 336 EIHPWHLHGHD-FWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNP 393 (444)
Q Consensus 336 ~~HP~HlHG~~-F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~adnp 393 (444)
...-||+.||. |+|++.. |.+ ..|...|++.|.+|++.-|.++++.+
T Consensus 219 ~~~~~~idgH~~~~VIa~D-G~~----------~~P~~v~~l~l~~GqRydVlv~~~~~ 266 (538)
T TIGR03390 219 SLISLGIEDHENLTIIEAD-GSY----------TKPAKIDHLQLGGGQRYSVLFKAKTE 266 (538)
T ss_pred eEEEEEECCCCeEEEEEeC-CCC----------CCceEeCeEEEccCCEEEEEEECCCc
Confidence 26899999999 9999984 433 46788999999999999999999864
No 27
>PLN02168 copper ion binding / pectinesterase
Probab=98.81 E-value=3.3e-07 Score=94.94 Aligned_cols=208 Identities=13% Similarity=0.127 Sum_probs=119.5
Q ss_pred eEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEE---eCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEE
Q 013385 97 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVE---ADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA 173 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via---~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~ 173 (444)
++|+++.|+++++++.|--... .+|+-|-+.+.. +||.+- ..-.|.||++|..-+++++ ..|+||.+.
T Consensus 57 P~I~~~~GD~v~V~v~N~L~~~---ttiHWHGl~~~~~~~~DGv~g-----tQcpI~PG~sftY~F~~~~-q~GT~WYHs 127 (545)
T PLN02168 57 PLLNATANDVINVNIFNNLTEP---FLMTWNGLQLRKNSWQDGVRG-----TNCPILPGTNWTYRFQVKD-QIGSYFYFP 127 (545)
T ss_pred CcEEEECCCEEEEEEEeCCCCC---ccEeeCCccCCCCCCcCCCCC-----CcCCCCCCCcEEEEEEeCC-CCceEEEec
Confidence 5899999999999999997642 344555555542 599653 2357999999999999963 379999998
Q ss_pred EecCCCCCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCccceEEEEEecccccCCeE
Q 013385 174 GVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFT 253 (444)
Q Consensus 174 ~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 253 (444)
......... ..+.|...+.... +.| .+.. +... ...+.+..... ....... +..... .....
T Consensus 128 H~~~Q~~~G--L~G~lII~~~~~~-----~~p-~~~~-d~e~----~l~l~Dw~~~~--~~~~~~~--~~~g~~-~~~~d 189 (545)
T PLN02168 128 SLLLQKAAG--GYGAIRIYNPELV-----PVP-FPKP-DEEY----DILIGDWFYAD--HTVMRAS--LDNGHS-LPNPD 189 (545)
T ss_pred ChhhhhhCc--ceeEEEEcCCccc-----CcC-cCcc-ccee----eEEEEecCCCC--HHHHHhh--hhcCCC-CCCCC
Confidence 753211112 2333322211100 000 0000 0000 00000000000 0000000 000000 00001
Q ss_pred EEEecCccccCCCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCCccccceEEEccCCCEEEEEEEeCCcCCCC
Q 013385 254 KWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPN 333 (444)
Q Consensus 254 ~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~ 333 (444)
...|||+... ...+.++.|++++|+|.|.+..
T Consensus 190 ~~liNG~~~~---------------------------------------------~~~~~v~~G~~yRlRiiNa~~~--- 221 (545)
T PLN02168 190 GILFNGRGPE---------------------------------------------ETFFAFEPGKTYRLRISNVGLK--- 221 (545)
T ss_pred EEEEeccCCC---------------------------------------------cceEEeCCCCEEEEEEEeccCC---
Confidence 2344443200 0148899999999999998754
Q ss_pred CCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcCC
Q 013385 334 LSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADN 392 (444)
Q Consensus 334 ~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~adn 392 (444)
..+-||+.||.|+|++.. |.+ ..|...|++.|.+|++.-|.+++++
T Consensus 222 --~~~~~~IdgH~~tVIa~D-G~~----------v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 222 --TCLNFRIQDHDMLLVETE-GTY----------VQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred --ceEEEEECCcEEEEEEEC-CeE----------CCCceeeEEEEcCCceEEEEEEcCC
Confidence 268999999999999974 433 3467789999999999999999974
No 28
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=98.80 E-value=5.4e-07 Score=94.10 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=64.5
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
++.++.|++++|.|+|.+.. ..+-++|.||.|+||+.. |.+ ..|...|++.|.+|+.+-|.+++
T Consensus 261 ~~~v~~G~rvRLR~INas~~-----~~f~l~I~gh~m~VIa~D-G~~----------v~Pv~vd~l~I~pGeRyDVlV~~ 324 (587)
T TIGR01480 261 TGLFRPGEKVRLRFINGSAM-----TYFDVRIPGLKLTVVAVD-GQY----------VHPVSVDEFRIAPAETFDVIVEP 324 (587)
T ss_pred eEEECCCCEEEEEEEecCCC-----ceEEEEECCCEEEEEEcC-CcC----------cCceEeCeEEEcCcceeEEEEec
Confidence 47889999999999998765 278999999999999984 432 35777899999999999999998
Q ss_pred CCceeeEEeccCh
Q 013385 391 DNPGAWAFHCHIE 403 (444)
Q Consensus 391 dnpG~w~~HCHi~ 403 (444)
...|.|.+...-.
T Consensus 325 ~~~g~~~i~a~~~ 337 (587)
T TIGR01480 325 TGDDAFTIFAQDS 337 (587)
T ss_pred CCCceEEEEEEec
Confidence 7788998887654
No 29
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.79 E-value=3.7e-07 Score=95.24 Aligned_cols=245 Identities=12% Similarity=0.133 Sum_probs=129.9
Q ss_pred eEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEE-EEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEEEe
Q 013385 97 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVV-VEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 175 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~v-ia~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~~~ 175 (444)
++|+++.|+++++++.|........|+.+|+...- -.+||.+- +..-.|.||+++...+++++ .|+||.+...
T Consensus 32 P~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~----vtq~~I~PG~s~~y~f~~~~--~Gt~wyH~H~ 105 (541)
T TIGR03388 32 PTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAG----VTQCAINPGETFIYNFVVDR--PGTYFYHGHY 105 (541)
T ss_pred CeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCc----cccCCcCCCCEEEEEEEcCC--CEEEEEEecc
Confidence 58999999999999999875445577777764321 22688642 34567899999999999976 7999999875
Q ss_pred cCCCCCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCccceEEEEEecccccCCeEEE
Q 013385 176 RGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKW 255 (444)
Q Consensus 176 ~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 255 (444)
.... .....+.|...+.... ..|. . + +.+. ...+.+... ............ ............
T Consensus 106 ~~q~--~~Gl~G~liV~~~~~~-----~~p~-~-~-d~e~----~l~l~Dw~~--~~~~~~~~~~~~-~~~~~~~~~d~~ 168 (541)
T TIGR03388 106 GMQR--SAGLYGSLIVDVPDGE-----KEPF-H-Y-DGEF----NLLLSDWWH--KSIHEQEVGLSS-KPMRWIGEPQSL 168 (541)
T ss_pred hHHh--hccceEEEEEecCCCC-----CCCc-c-c-cceE----EEEeecccC--CCHHHHHhhccc-CCCcCCCCCcce
Confidence 3211 1112333333321110 0000 0 0 1000 001111000 000000000000 000000001124
Q ss_pred EecCcccc-CCCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCCccccceEEEccCCCEEEEEEEeCCcCCCCC
Q 013385 256 AINNVSLT-LPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNL 334 (444)
Q Consensus 256 ~iNg~~~~-~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~ 334 (444)
.|||+... ......+. ..... .+. .+.+......++.++.|++++|.|+|.+..
T Consensus 169 liNG~g~~~~~~~~~~~------------~~~~~----~~~-----~~~~~~~~~~~~~v~~g~~~RlRliNa~~~---- 223 (541)
T TIGR03388 169 LINGRGQFNCSLAAKFS------------STNLP----QCN-----LKGNEQCAPQILHVEPGKTYRLRIASTTAL---- 223 (541)
T ss_pred EECCCCCCCCccccccC------------ccccc----hhh-----ccCCCCCCceEEEECCCCEEEEEEEccccc----
Confidence 56654211 00000000 00000 000 000000011247899999999999997654
Q ss_pred CCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcCC-ce-eeEEecc
Q 013385 335 SEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADN-PG-AWAFHCH 401 (444)
Q Consensus 335 ~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~adn-pG-~w~~HCH 401 (444)
..+-|+++||.|+||+.. |.+ ..|..-|.+.|.+|++.-|.++++. +| .|.++--
T Consensus 224 -~~~~~~id~h~~~VIa~D-G~~----------v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~ 280 (541)
T TIGR03388 224 -AALNFAIEGHKLTVVEAD-GNY----------VEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVG 280 (541)
T ss_pred -ceEEEEECCCEEEEEEeC-CEe----------cccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEe
Confidence 289999999999999985 432 3577889999999999999999975 54 5555543
No 30
>PLN02991 oxidoreductase
Probab=98.79 E-value=4.5e-07 Score=93.83 Aligned_cols=213 Identities=12% Similarity=0.090 Sum_probs=123.0
Q ss_pred eEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEE---EEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEE
Q 013385 97 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVV---VEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA 173 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~v---ia~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~ 173 (444)
++|+++.|+++++++.|.-.. ..+|+-|-+.+ -.+||.+. ..-.|.||+.|..-+++.+ ..|+||.++
T Consensus 59 P~I~~~~GD~v~V~V~N~L~~---~ttiHWHGi~q~~~~~~DGv~~-----tQcpI~PG~sftY~F~~~~-q~GT~WYHs 129 (543)
T PLN02991 59 PDIISVTNDNLIINVFNHLDE---PFLISWSGIRNWRNSYQDGVYG-----TTCPIPPGKNYTYALQVKD-QIGSFYYFP 129 (543)
T ss_pred CcEEEECCCEEEEEecCCCCC---CccEEECCcccCCCccccCCCC-----CCCccCCCCcEEEEEEeCC-CCcceEEec
Confidence 589999999999999999743 33555555554 35899643 2457999999999999863 479999998
Q ss_pred EecCCCCCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCccceEEEEEecccccCCeE
Q 013385 174 GVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFT 253 (444)
Q Consensus 174 ~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 253 (444)
+......... .+-|...+.... +.|......+. ...+.+..- . ........+ ..... .....
T Consensus 130 H~~~q~~~Gl--~G~lIV~~~~~~-----~~p~~~~d~d~------~i~l~DW~~-~-~~~~~~~~~--~~~~~-~~~~d 191 (543)
T PLN02991 130 SLGFHKAAGG--FGAIRISSRPLI-----PVPFPAPADDY------TVLIGDWYK-T-NHKDLRAQL--DNGGK-LPLPD 191 (543)
T ss_pred CcchhhhCCC--eeeEEEeCCccc-----Cccccccccee------EEEecceec-C-CHHHHHHHh--hcCCC-CCCCC
Confidence 7532211122 333322211100 00100000000 000000000 0 000000000 00000 00001
Q ss_pred EEEecCccccCCCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCCccccceEEEccCCCEEEEEEEeCCcCCCC
Q 013385 254 KWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPN 333 (444)
Q Consensus 254 ~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~ 333 (444)
...|||+.. ...+.++.|++++|+|+|.+..
T Consensus 192 ~~liNG~~~----------------------------------------------~~~~~v~~G~~yRlRiINa~~~--- 222 (543)
T PLN02991 192 GILINGRGS----------------------------------------------GATLNIEPGKTYRLRISNVGLQ--- 222 (543)
T ss_pred EEEEccCCC----------------------------------------------CceEEECCCCEEEEEEEeccCC---
Confidence 233444310 0138899999999999998765
Q ss_pred CCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcCC-ce-eeEE
Q 013385 334 LSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADN-PG-AWAF 398 (444)
Q Consensus 334 ~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~adn-pG-~w~~ 398 (444)
..+-|++.||.|+|++.. |.+ ..|...|++.|.+|++.-|.+++++ +| .|+.
T Consensus 223 --~~~~~~idgH~~tVIa~D-G~~----------~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~ 276 (543)
T PLN02991 223 --NSLNFRIQNHTMKLVEVE-GTH----------TIQTPFSSLDVHVGQSYSVLITADQPAKDYYIV 276 (543)
T ss_pred --eeEEEEECCCEEEEEEeC-Ccc----------ccceeeeEEEEcCCcEEEEEEECCCCCCcEEEE
Confidence 268999999999999984 433 2467789999999999999999987 56 4543
No 31
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.79 E-value=1.2e-08 Score=84.14 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=67.2
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
++.++.|+.|++.+.|.... .+.+|+||...---...+|.. .. -.-.|.||+....+|++
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~------~~siH~HG~~~~~~~~~DG~~-------------~~-~~~~i~pG~~~~Y~~~~ 86 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDE------PTSIHWHGLHQPPSPWMDGVP-------------GV-TQCPIAPGESFTYEFTA 86 (117)
T ss_dssp EEEEETTEEEEEEEEEESSS------GBSEEEETSBSTTGGGGSGGT-------------TT-SGSSBSTTEEEEEEEEE
T ss_pred EEEEEcCCeeEEEEEecccc------ccccccceeeeeeeeecCCcc-------------cc-cceeEEeecceeeeEee
Confidence 59999999999999997755 899999997531110011110 00 01247889999999999
Q ss_pred CC-ceeeEEeccChhhHhcccEEEEecccc
Q 013385 391 DN-PGAWAFHCHIEPHFHIGMGVVLALGVE 419 (444)
Q Consensus 391 dn-pG~w~~HCHi~~H~~~GM~~~~~~~~~ 419 (444)
+. +|.|.||||...|...||...|.+.++
T Consensus 87 ~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 87 NQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 98 999999999999988999999977654
No 32
>PLN02191 L-ascorbate oxidase
Probab=98.63 E-value=1.7e-06 Score=90.61 Aligned_cols=73 Identities=16% Similarity=0.265 Sum_probs=60.0
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
++.++.|++++|+|+|.+.. ..+-|++.||+|.|++.. |.+ ..|...|++.|.+|++.-|-+++
T Consensus 227 ~~~v~~G~~yRlRiINa~~~-----~~~~~~idgH~~tVIa~D-G~~----------v~P~~v~~l~i~~GqRydVlV~a 290 (574)
T PLN02191 227 TLRVEPNKTYRIRLASTTAL-----ASLNLAVQGHKLVVVEAD-GNY----------ITPFTTDDIDIYSGESYSVLLTT 290 (574)
T ss_pred EEEEcCCCEEEEEEEecCCc-----eeEEEEECCCeEEEEEcC-Cee----------ccceEeeeEEEcCCCeEEEEEEC
Confidence 58999999999999998654 278999999999999984 433 35788999999999999999998
Q ss_pred CC-ce-eeEEe
Q 013385 391 DN-PG-AWAFH 399 (444)
Q Consensus 391 dn-pG-~w~~H 399 (444)
+. +| .|-++
T Consensus 291 ~~~~~~~y~ir 301 (574)
T PLN02191 291 DQDPSQNYYIS 301 (574)
T ss_pred CCCCCCCEEEE
Confidence 86 44 34333
No 33
>PRK10883 FtsI repressor; Provisional
Probab=98.63 E-value=2.9e-06 Score=86.96 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=59.0
Q ss_pred EEccCCCEEEEEEEeCCcCCCCCCCCCceee-cccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 312 YMLGLNTTVDVILQNANAIRPNLSEIHPWHL-HGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 312 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~Hl-HG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
+.++.+ +++|.|.|.+.. ...-+++ +||.|+|++...|.. ..|...|.+.+.+|+.+-|-+++
T Consensus 222 ~~v~~~-~~RlRliNas~~-----~~~~l~l~d~~~~~vIa~DGg~~----------~~P~~~~~l~l~pGeR~dvlVd~ 285 (471)
T PRK10883 222 VEVSRG-WVRLRLLNASNA-----RRYQLQMSDGRPLHVIAGDQGFL----------PAPVSVKQLSLAPGERREILVDM 285 (471)
T ss_pred EEecCC-EEEEEEEEccCC-----ceEEEEEcCCCeEEEEEeCCCcc----------cCCcEeCeEEECCCCeEEEEEEC
Confidence 667765 789999998753 1577788 899999999865543 35677899999999999999998
Q ss_pred CCceeeEEec
Q 013385 391 DNPGAWAFHC 400 (444)
Q Consensus 391 dnpG~w~~HC 400 (444)
++.+.|.+++
T Consensus 286 ~~~~~~~l~~ 295 (471)
T PRK10883 286 SNGDEVSITA 295 (471)
T ss_pred CCCceEEEEC
Confidence 8878888887
No 34
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.54 E-value=5.7e-06 Score=86.37 Aligned_cols=228 Identities=12% Similarity=0.091 Sum_probs=125.7
Q ss_pred eEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEE-EEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEEEe
Q 013385 97 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVV-VEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 175 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~v-ia~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~~~ 175 (444)
++|+++.|+++++++.|-... ...|+.+|..+.- --+||.+. ..-.|.||++|..-+++++ +.|+||.+++.
T Consensus 60 PtI~~~~GD~v~V~V~N~L~~-~ttIHWHGl~q~~t~w~DGv~~-----TQcPI~PG~sftY~F~~~d-q~GT~WYHsH~ 132 (596)
T PLN00044 60 PALNVTTNWNLVVNVRNALDE-PLLLTWHGVQQRKSAWQDGVGG-----TNCAIPAGWNWTYQFQVKD-QVGSFFYAPST 132 (596)
T ss_pred CcEEEECCCEEEEEEEeCCCC-CccEEECCccCCCCccccCCCC-----CcCCcCCCCcEEEEEEeCC-CCceeEeeccc
Confidence 589999999999999999753 3455666654433 24899642 3468999999999999963 47999999875
Q ss_pred cCCCCCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCccceEEEEEecccccCCeEEE
Q 013385 176 RGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKW 255 (444)
Q Consensus 176 ~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 255 (444)
.........+ +++.+... .. +.+.+ .+...+. ...+.+... ......... +..+ .........
T Consensus 133 ~~Q~~~Gl~G-alII~~~~-~~---~~P~~-~~~~~e~------~i~l~DW~~--~~~~~~~~~--l~~g-~~~~~~d~~ 195 (596)
T PLN00044 133 ALHRAAGGYG-AITINNRD-VI---PIPFG-FPDGGDI------TLFIADWYA--RDHRALRRA--LDAG-DLLGAPDGV 195 (596)
T ss_pred hhhhhCcCee-EEEEcCcc-cc---ccccc-CCcccce------EEEeccccc--CCHHHHHHH--HhcC-CCCCCCCce
Confidence 3221111222 23333211 10 00000 0000000 000000000 000000000 0000 000000012
Q ss_pred EecCccccCCCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCCccccceEEEccCCCEEEEEEEeCCcCCCCCC
Q 013385 256 AINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLS 335 (444)
Q Consensus 256 ~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~ 335 (444)
.|||...... +... .++ + ....++.++.|++++|.|+|.+..
T Consensus 196 lING~g~~~~------------n~~~---~~~----------~--------~~~~~i~V~~Gk~yRlRiINaa~~----- 237 (596)
T PLN00044 196 LINAFGPYQY------------NDSL---VPP----------G--------ITYERINVDPGKTYRFRVHNVGVA----- 237 (596)
T ss_pred EEcccCcccc------------CCcc---ccC----------C--------CccceEEECCCCEEEEEEEEccCC-----
Confidence 2444311000 0000 000 0 001258999999999999998654
Q ss_pred CCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcCCc-e--eeE
Q 013385 336 EIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNP-G--AWA 397 (444)
Q Consensus 336 ~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~adnp-G--~w~ 397 (444)
...-|++-||+|.|++.. |.+ ..|...|++.|.+|++.-+-++++.+ | .|+
T Consensus 238 ~~~~fsIdgH~mtVIa~D-G~~----------v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i 291 (596)
T PLN00044 238 TSLNFRIQGHNLLLVEAE-GSY----------TSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYV 291 (596)
T ss_pred ceEEEEECCCEEEEEEeC-Ccc----------cCceeeeeEEEcCCceEEEEEECCCCCCCceEE
Confidence 277899999999999984 543 35788899999999999999999874 5 576
No 35
>PRK10965 multicopper oxidase; Provisional
Probab=98.52 E-value=1.2e-05 Score=83.34 Aligned_cols=214 Identities=14% Similarity=0.098 Sum_probs=119.8
Q ss_pred eEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEEEec
Q 013385 97 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVR 176 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~~~~ 176 (444)
++|++++|+++++++.|--.. ...++.+|-.+. -+.||.+ ...|.||++++..+++++ ++|+||.+....
T Consensus 77 PtIr~~~Gd~v~v~~~N~L~~-~ttiHwHGl~~~-~~~DG~p-------q~~I~PG~s~~Y~f~~~q-~aGT~WYH~H~~ 146 (523)
T PRK10965 77 PAVRLQRGKAVTVDITNQLPE-ETTLHWHGLEVP-GEVDGGP-------QGIIAPGGKRTVTFTVDQ-PAATCWFHPHQH 146 (523)
T ss_pred ceEEEECCCEEEEEEEECCCC-CccEEcccccCC-CccCCCC-------CCCCCCCCEEEEEeccCC-CCceEEEecCCC
Confidence 689999999999999998654 335555554432 1589975 345789999999999987 579999988853
Q ss_pred CCCC-CC-CCeEEEEEEcCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCccceEEEEEecc-cccCC--
Q 013385 177 GRKP-AT-PPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQ-NTING-- 251 (444)
Q Consensus 177 ~~~~-~~-~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~-- 251 (444)
.... +. ....+.+...+... .....|..-...+.. ..+.+..- . .+..+.+.... ....+
T Consensus 147 g~t~~Qv~~GL~G~lIV~d~~~---~~~~lp~~~~~~d~~------lvlqD~~~-~-----~~g~~~~~~~~~~~~~g~~ 211 (523)
T PRK10965 147 GKTGRQVAMGLAGLVLIEDDES---LKLGLPKQWGVDDIP------VILQDKRF-S-----ADGQIDYQLDVMTAAVGWF 211 (523)
T ss_pred CCcHHHHhCcCeEEEEEcCccc---cccCCcccCCCceee------EEEEeeee-C-----CCCceeccccccccccCcc
Confidence 3221 21 11233333332110 000011000000100 00000000 0 00000000000 00000
Q ss_pred eEEEEecCccccCCCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCCccccceEEEccCCCEEEEEEEeCCcCC
Q 013385 252 FTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIR 331 (444)
Q Consensus 252 ~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~ 331 (444)
.....|||+.+ | .+.++ +++++|.|.|.+..
T Consensus 212 gd~~lVNG~~~------------------------p-----------------------~~~v~-~~~~RlRliNas~~- 242 (523)
T PRK10965 212 GDTLLTNGAIY------------------------P-----------------------QHAAP-RGWLRLRLLNGCNA- 242 (523)
T ss_pred CCeEEECCccc------------------------c-----------------------eeecC-CCEEEEEEEeccCC-
Confidence 01234555421 0 13443 56999999998752
Q ss_pred CCCCCCCceee---cccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcCCceeeEEec
Q 013385 332 PNLSEIHPWHL---HGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHC 400 (444)
Q Consensus 332 ~~~~~~HP~Hl---HG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~adnpG~w~~HC 400 (444)
..++| .||.|+||+...+.. ..|...|++.|.||+.+-|-++++..|.+.+..
T Consensus 243 ------r~~~l~~~dg~~~~vIa~DG~~l----------~~P~~v~~l~lapGeR~dvlv~~~~~~~~~l~~ 298 (523)
T PRK10965 243 ------RSLNLATSDGRPLYVIASDGGLL----------AEPVKVSELPILMGERFEVLVDTSDGKAFDLVT 298 (523)
T ss_pred ------ceEEEEEcCCceEEEEEeCCCcc----------cCccEeCeEEECccceEEEEEEcCCCceEEEEE
Confidence 34444 689999999864432 357788999999999999999988888777655
No 36
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.31 E-value=1.8e-06 Score=75.50 Aligned_cols=89 Identities=20% Similarity=0.214 Sum_probs=74.0
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
++.++.|++++|.|.|.+.. ..|.||+.||.|+|++.. |.+ ..|...|++.|.+|+.+.|.+++
T Consensus 61 ~~~v~~g~~~rlRliNa~~~-----~~~~~~i~gh~~~Via~D-G~~----------v~p~~~~~l~l~~G~R~dvlv~~ 124 (159)
T PF00394_consen 61 VIKVKPGERYRLRLINAGAS-----TSFNFSIDGHPMTVIAAD-GVP----------VEPYKVDTLVLAPGQRYDVLVTA 124 (159)
T ss_dssp EEEEETTTEEEEEEEEESSS------BEEEEETTBCEEEEEET-TEE----------EEEEEESBEEE-TTEEEEEEEEE
T ss_pred eEEEcCCcEEEEEEEeccCC-----eeEEEEeeccceeEeeec-ccc----------ccccccceEEeeCCeEEEEEEEe
Confidence 68999999999999997654 279999999999999984 432 23788999999999999999999
Q ss_pred CC-ceeeEEec----cChhhHhcccEEEEe
Q 013385 391 DN-PGAWAFHC----HIEPHFHIGMGVVLA 415 (444)
Q Consensus 391 dn-pG~w~~HC----Hi~~H~~~GM~~~~~ 415 (444)
+. +|.|.+++ +...+...|+...++
T Consensus 125 ~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL 154 (159)
T PF00394_consen 125 DQPPGNYWIRASYQHDSINDPQNGNALAIL 154 (159)
T ss_dssp CSCSSEEEEEEEESSSSSHSHGGGTTEEEE
T ss_pred CCCCCeEEEEEecccCCCccCCCcEEEEEE
Confidence 87 99999999 666777788776654
No 37
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.15 E-value=1.6e-05 Score=68.14 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=57.8
Q ss_pred EEEccCCCEEEEEEEeCCc-CCCCCCCCCceeecccce--EEEeecCCCCCchhhcccCCCCCCccceEEeCC---C--c
Q 013385 311 VYMLGLNTTVDVILQNANA-IRPNLSEIHPWHLHGHDF--WVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFP---Y--G 382 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~-~~~~~~~~HP~HlHG~~F--~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~---~--g 382 (444)
.+.++.|+.|++++.|... . .|.|-||-+.- .....-+|. |..-..-.+|+ | +
T Consensus 53 ~I~v~~Gd~V~v~v~N~~~~~------~H~~~I~~~g~~~~~~p~mdG~-------------~~~~~~~i~p~~~~g~~~ 113 (148)
T TIGR03095 53 TIVIPEGVTVHFTVINTDTDS------GHNFDISKRGPPYPYMPGMDGL-------------GFVAGTGFLPPPKSGKFG 113 (148)
T ss_pred EEEEcCCCEEEEEEEeCCCCc------cccEEeecCCCccccccccCCC-------------CccccCcccCCCCCCccc
Confidence 4899999999999999754 3 67776664321 110000010 11112222232 2 2
Q ss_pred EEEEEEEcCCceeeEEeccChhhHhcccEEEEec
Q 013385 383 WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL 416 (444)
Q Consensus 383 ~v~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~ 416 (444)
+..+.|+++.+|.+.||||+..|...||...|.+
T Consensus 114 ~~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 114 YTDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred eeEEEEECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 4678888889999999999999999999988864
No 38
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.04 E-value=5.4e-05 Score=64.32 Aligned_cols=76 Identities=9% Similarity=0.173 Sum_probs=67.4
Q ss_pred eEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccc-----------eeeEeeeEEecCCceEEEEEecCCCC
Q 013385 97 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV-----------QPFEVDDMDIYSGESYSVLLTTNQDP 165 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v-----------~p~~v~~~~i~~GeR~dV~v~~~~~~ 165 (444)
..+.++.|+.++|+|+|.+.. ...|+++||.|+|++.++... .|...|++.|.+|++..+.++++.
T Consensus 34 ~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~-- 110 (138)
T PF07731_consen 34 PVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN-- 110 (138)
T ss_dssp SEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS--
T ss_pred ceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeec--
Confidence 478999999999999997766 779999999999999999984 578899999999999999999975
Q ss_pred CcceEEEEEe
Q 013385 166 SYNYWISAGV 175 (444)
Q Consensus 166 ~g~y~i~~~~ 175 (444)
+|.|-++-..
T Consensus 111 ~G~w~~HCHi 120 (138)
T PF07731_consen 111 PGPWLFHCHI 120 (138)
T ss_dssp TEEEEEEESS
T ss_pred ceEEEEEEch
Confidence 6888777654
No 39
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.02 E-value=0.00043 Score=71.79 Aligned_cols=206 Identities=17% Similarity=0.207 Sum_probs=127.2
Q ss_pred eEEEEcCCCeEEEEEEecCcceeEEEEEcCcc-eEEEEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEEEe
Q 013385 97 QILHVQPNKTYRLRIASTTALASLNLAVKNHK-MVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 175 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~-~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~~~ 175 (444)
++|.++.|+++.++++|-. ...+.++.+|-. .+---+||.++ ..=.|.|||.|-.-+++++ ..|+||-.++.
T Consensus 59 P~I~~~~gD~ivV~v~N~~-~~~~sihWhGv~q~kn~w~DG~~~-----TqCPI~Pg~~~tY~F~v~~-q~GT~~yh~h~ 131 (563)
T KOG1263|consen 59 PTINAEEGDTIVVNVVNRL-DEPFSIHWHGVRQRKNPWQDGVYI-----TQCPIQPGENFTYRFTVKD-QIGTLWYHSHV 131 (563)
T ss_pred CeEEEEeCCEEEEEEEeCC-CCceEEEeccccccCCccccCCcc-----ccCCcCCCCeEEEEEEeCC-cceeEEEeecc
Confidence 4899999999999999994 456666666643 33445699443 3445889999999999986 47899998876
Q ss_pred cCCCCCCCCeEEEEEEcCCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCccceEEEEEeccccc------
Q 013385 176 RGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTI------ 249 (444)
Q Consensus 176 ~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~------ 249 (444)
..... ....+-|........ + .+.+ +.++++.+..+.-..
T Consensus 132 ~~~Ra--~G~~G~liI~~~~~~--p-~pf~-----------------------------~pd~E~~ill~dW~~~~~~~~ 177 (563)
T KOG1263|consen 132 SWQRA--TGVFGALIINPRPGL--P-VPFP-----------------------------KPDKEFTILLGDWYKNLNHKN 177 (563)
T ss_pred ccccc--cCceeEEEEcCCccC--C-CCCC-----------------------------CCCceeEEEeEeeccccCHHH
Confidence 43321 113333333211100 0 0000 112222222210000
Q ss_pred ------------CCeEEEEecCccccCCCCCccccccccCCccCCCCCCCCCCCCCccccCCCCCCCccccceEEEccCC
Q 013385 250 ------------NGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLN 317 (444)
Q Consensus 250 ------------~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 317 (444)
.......|||.+.. ...|...+.+..|
T Consensus 178 l~~~~~~~~~~p~~~D~~~iNg~~g~-----------------------------------------~~~~~~~l~v~pG 216 (563)
T KOG1263|consen 178 LKNFLDRTGALPNPSDGVLINGRSGF-----------------------------------------LYNCTPTLTVEPG 216 (563)
T ss_pred HHHhhccCCCCCCCCCceEECCCCCc-----------------------------------------ccCceeEEEEcCC
Confidence 00001233333210 0112346899999
Q ss_pred CEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcCC-ce-e
Q 013385 318 TTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADN-PG-A 395 (444)
Q Consensus 318 ~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~adn-pG-~ 395 (444)
+++.|.|.|.+... ..+ |.+=||...||+. +|.+ ..|..-|++.|-+|+...+-.+||. ++ .
T Consensus 217 ktY~lRiiN~g~~~----~l~-F~I~~H~ltvVe~-Dg~y----------~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y 280 (563)
T KOG1263|consen 217 KTYRLRIINAGLNT----SLN-FSIANHQLTVVEV-DGAY----------TKPFTTDSLDIHPGQTYSVLLTADQSPGDY 280 (563)
T ss_pred CEEEEEEEcccccc----ceE-EEECCeEEEEEEe-cceE----------EeeeeeceEEEcCCcEEEEEEeCCCCCCcE
Confidence 99999999976541 144 9999999999998 4544 3467789999999999999999987 55 4
Q ss_pred eEEec
Q 013385 396 WAFHC 400 (444)
Q Consensus 396 w~~HC 400 (444)
|+.=|
T Consensus 281 ~i~~~ 285 (563)
T KOG1263|consen 281 YIAAS 285 (563)
T ss_pred EEEEE
Confidence 55444
No 40
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.69 E-value=0.00021 Score=57.07 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=57.3
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|++|+|+ |.+.. .|-+.++.-.+..-.. .+ ......+++.+.||+...+.|.+
T Consensus 18 ~i~v~~G~~V~~~--N~~~~------~H~~~~~~~~~~~~~~---~~----------~~~~~~~~~~~~pG~t~~~tF~~ 76 (99)
T TIGR02656 18 KISIAAGDTVEWV--NNKGG------PHNVVFDEDAVPAGVK---EL----------AKSLSHKDLLNSPGESYEVTFST 76 (99)
T ss_pred EEEECCCCEEEEE--ECCCC------CceEEECCCCCccchh---hh----------cccccccccccCCCCEEEEEeCC
Confidence 3899999999887 65544 7887765432211100 00 00123467888999998888776
Q ss_pred CCceeeEEeccChhhHhcccEEEEec
Q 013385 391 DNPGAWAFHCHIEPHFHIGMGVVLAL 416 (444)
Q Consensus 391 dnpG~w~~HCHi~~H~~~GM~~~~~~ 416 (444)
||.|.|||- .|...||...+.+
T Consensus 77 --~G~y~y~C~--~H~~aGM~G~I~V 98 (99)
T TIGR02656 77 --PGTYTFYCE--PHRGAGMVGKITV 98 (99)
T ss_pred --CEEEEEEcC--CccccCCEEEEEE
Confidence 999999998 8999999998864
No 41
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.46 E-value=0.00064 Score=56.58 Aligned_cols=60 Identities=22% Similarity=0.362 Sum_probs=49.3
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|+.|+|++.|.+.. +|.+-++++. -...|++|+...|+|.+
T Consensus 62 ~I~VkaGD~Vtl~vtN~d~~------~H~f~i~~~g---------------------------is~~I~pGet~TitF~a 108 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKSPI------SEGFSIDAYG---------------------------ISEVIKAGETKTISFKA 108 (135)
T ss_pred EEEECCCCEEEEEEEeCCCC------ccceEECCCC---------------------------cceEECCCCeEEEEEEC
Confidence 38999999999999998765 7776666542 13557889999999999
Q ss_pred CCceeeEEeccCh
Q 013385 391 DNPGAWAFHCHIE 403 (444)
Q Consensus 391 dnpG~w~~HCHi~ 403 (444)
+-||.|.|||-+-
T Consensus 109 dKpG~Y~y~C~~H 121 (135)
T TIGR03096 109 DKAGAFTIWCQLH 121 (135)
T ss_pred CCCEEEEEeCCCC
Confidence 9999999999753
No 42
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.41 E-value=0.014 Score=59.87 Aligned_cols=74 Identities=18% Similarity=0.100 Sum_probs=57.2
Q ss_pred EccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcCC
Q 013385 313 MLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADN 392 (444)
Q Consensus 313 ~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~adn 392 (444)
....+.++++.|.|.+... ..=+++.|+.++|++...+... |...|.+.+.+++...|..++.+
T Consensus 202 ~~~~~g~~rlRl~n~~~~~-----~~~~~~~~~~~~Vi~~DG~~v~-----------~~~~d~~~l~p~er~~v~v~~~~ 265 (451)
T COG2132 202 KAVPGGVVRLRLLNAGNAR-----TYHLALGGGPLTVIAVDGGPLP-----------PVSVDELYLAPGERYEVLVDMND 265 (451)
T ss_pred eecCCCeEEEEEEecCCce-----EEEEEecCceEEEEEeCCcCcC-----------ceeeeeEEecCcceEEEEEEcCC
Confidence 3344556999999987320 4455566999999998654322 35689999999999999999988
Q ss_pred ceeeEEeccC
Q 013385 393 PGAWAFHCHI 402 (444)
Q Consensus 393 pG~w~~HCHi 402 (444)
.|.+.+.|.-
T Consensus 266 ~~~~~l~~~~ 275 (451)
T COG2132 266 GGAVTLTALG 275 (451)
T ss_pred CCeEEEEecc
Confidence 9999999988
No 43
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.93 E-value=0.0041 Score=50.01 Aligned_cols=68 Identities=18% Similarity=0.329 Sum_probs=43.5
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|+.+.+++.|.+.. .|-|.+.+ . .-...+++|+...+.|.+
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~------~h~~~i~~-------~--------------------~~~~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSR------PHEFVIPD-------L--------------------GISKVLPPGETATVTFTP 82 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-------EEEEEGG-------G--------------------TEEEEE-TT-EEEEEEEE
T ss_pred EEEEcCCCeEEEEEEECCCC------cEEEEECC-------C--------------------ceEEEECCCCEEEEEEcC
Confidence 48999999999999998765 45444444 1 122678889999999999
Q ss_pred CCceeeEEeccChhhHhcccEE
Q 013385 391 DNPGAWAFHCHIEPHFHIGMGV 412 (444)
Q Consensus 391 dnpG~w~~HCHi~~H~~~GM~~ 412 (444)
+.||.|-|||-+-.+ ..|...
T Consensus 83 ~~~G~y~~~C~~~~~-m~G~li 103 (104)
T PF13473_consen 83 LKPGEYEFYCTMHPN-MKGTLI 103 (104)
T ss_dssp -S-EEEEEB-SSS-T-TB----
T ss_pred CCCEEEEEEcCCCCc-ceeccc
Confidence 999999999996665 466543
No 44
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=96.59 E-value=0.0023 Score=52.66 Aligned_cols=75 Identities=21% Similarity=0.283 Sum_probs=55.5
Q ss_pred eEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEE-EEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEEEe
Q 013385 97 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVV-VEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 175 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~v-ia~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~~~ 175 (444)
++|.++.|++++++|.|.... ...|+.+|-.+.- -..||.+-. ..-.|.||+++...+++++ +.|+||.+...
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~~-~~siH~HG~~~~~~~~~DG~~~~----~~~~i~pG~~~~Y~~~~~~-~~Gt~wYH~H~ 99 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLDE-PTSIHWHGLHQPPSPWMDGVPGV----TQCPIAPGESFTYEFTANQ-QAGTYWYHSHV 99 (117)
T ss_dssp EEEEEETTEEEEEEEEEESSS-GBSEEEETSBSTTGGGGSGGTTT----SGSSBSTTEEEEEEEEESS-CSEEEEEEECS
T ss_pred CEEEEEcCCeeEEEEEecccc-ccccccceeeeeeeeecCCcccc----cceeEEeecceeeeEeeec-cccceeEeeCC
Confidence 589999999999999999844 3466666643211 026776532 2235889999999999998 68999998876
Q ss_pred cC
Q 013385 176 RG 177 (444)
Q Consensus 176 ~~ 177 (444)
..
T Consensus 100 ~~ 101 (117)
T PF07732_consen 100 HG 101 (117)
T ss_dssp TT
T ss_pred Cc
Confidence 44
No 45
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.44 E-value=0.026 Score=44.84 Aligned_cols=80 Identities=16% Similarity=0.341 Sum_probs=53.1
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCch-hhcccCCCCCCccceEEeCCCcEEEEEEE
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE-DEKKFNLKNPPLKNTAVIFPYGWTALRFV 389 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~-~~~~~n~~~p~~rDTv~v~~~g~v~irf~ 389 (444)
.+.++.|++|.|+.. +.. .|.+++ .. +.+... +..... ..-.+..+.+|....+.|.
T Consensus 18 ~i~V~~G~tV~~~n~--~~~------~Hnv~~-------~~---~~~~~~~~~~~~~----~~~~~~~~~~G~~~~~tF~ 75 (99)
T PF00127_consen 18 EITVKAGDTVTFVNN--DSM------PHNVVF-------VA---DGMPAGADSDYVP----PGDSSPLLAPGETYSVTFT 75 (99)
T ss_dssp EEEEETTEEEEEEEE--SSS------SBEEEE-------ET---TSSHTTGGHCHHS----TTCEEEEBSTTEEEEEEEE
T ss_pred EEEECCCCEEEEEEC--CCC------CceEEE-------ec---ccccccccccccC----ccccceecCCCCEEEEEeC
Confidence 489999999988755 333 565443 22 111100 011011 1116777888998888888
Q ss_pred cCCceeeEEeccChhhHhcccEEEEec
Q 013385 390 ADNPGAWAFHCHIEPHFHIGMGVVLAL 416 (444)
Q Consensus 390 adnpG~w~~HCHi~~H~~~GM~~~~~~ 416 (444)
.+|.|.|+|- - |...||-..|.+
T Consensus 76 --~~G~y~y~C~-P-H~~~GM~G~i~V 98 (99)
T PF00127_consen 76 --KPGTYEYYCT-P-HYEAGMVGTIIV 98 (99)
T ss_dssp --SSEEEEEEET-T-TGGTTSEEEEEE
T ss_pred --CCeEEEEEcC-C-CcccCCEEEEEE
Confidence 8999999999 4 999999988865
No 46
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=96.24 E-value=0.023 Score=47.47 Aligned_cols=62 Identities=13% Similarity=0.238 Sum_probs=48.8
Q ss_pred CceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEEE
Q 013385 95 APQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAG 174 (444)
Q Consensus 95 ~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~~ 174 (444)
.|..|+|++|++++|++.|.... ...+.++++. -...|.+||+..+-+.+++ +|.|+..-.
T Consensus 59 ~P~~I~VkaGD~Vtl~vtN~d~~-~H~f~i~~~g----------------is~~I~pGet~TitF~adK--pG~Y~y~C~ 119 (135)
T TIGR03096 59 EPEALVVKKGTPVKVTVENKSPI-SEGFSIDAYG----------------ISEVIKAGETKTISFKADK--AGAFTIWCQ 119 (135)
T ss_pred cCCEEEECCCCEEEEEEEeCCCC-ccceEECCCC----------------cceEECCCCeEEEEEECCC--CEEEEEeCC
Confidence 45689999999999999998874 4456666542 1567899999999999987 799998644
Q ss_pred e
Q 013385 175 V 175 (444)
Q Consensus 175 ~ 175 (444)
.
T Consensus 120 ~ 120 (135)
T TIGR03096 120 L 120 (135)
T ss_pred C
Confidence 3
No 47
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.17 E-value=0.023 Score=59.27 Aligned_cols=76 Identities=18% Similarity=0.298 Sum_probs=53.7
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|+.|.|.+.|.+.. ....|-|.+-++. --+.+.||....+.|++
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~---~DViHGF~Ip~~n---------------------------I~~dv~PG~t~svtF~a 605 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKV---EDLTHGFAIPNYG---------------------------VNMEVAPQATASVTFTA 605 (635)
T ss_pred eEEecCCCEEEEEEEeCCcc---cccccceeecccC---------------------------ccEEEcCCceEEEEEEc
Confidence 46789999999999996431 1125665553332 12356688999999999
Q ss_pred CCceeeEEeccCh---hhHhcccEEEEeccc
Q 013385 391 DNPGAWAFHCHIE---PHFHIGMGVVLALGV 418 (444)
Q Consensus 391 dnpG~w~~HCHi~---~H~~~GM~~~~~~~~ 418 (444)
+.||.|.+||... .|. +|...+.+.+
T Consensus 606 dkPGvy~~~CtefCGa~H~--~M~G~~iVep 634 (635)
T PRK02888 606 DKPGVYWYYCTWFCHALHM--EMRGRMLVEP 634 (635)
T ss_pred CCCEEEEEECCcccccCcc--cceEEEEEEe
Confidence 9999999999873 443 7777666543
No 48
>PRK02710 plastocyanin; Provisional
Probab=96.01 E-value=0.034 Score=45.82 Aligned_cols=70 Identities=20% Similarity=0.296 Sum_probs=50.3
Q ss_pred EEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcC
Q 013385 312 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 391 (444)
Q Consensus 312 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~ad 391 (444)
+.++.|++|+|+ |.+.. .|-+.+.+.. .+ ..++ ..+.+|+...+.|..
T Consensus 49 i~v~~Gd~V~~~--N~~~~------~H~v~~~~~~---------~~-------------~~~~-~~~~pg~t~~~tF~~- 96 (119)
T PRK02710 49 LTIKAGDTVKWV--NNKLA------PHNAVFDGAK---------EL-------------SHKD-LAFAPGESWEETFSE- 96 (119)
T ss_pred EEEcCCCEEEEE--ECCCC------CceEEecCCc---------cc-------------cccc-cccCCCCEEEEEecC-
Confidence 899999998885 65544 7877654221 10 0112 346788887777776
Q ss_pred CceeeEEeccChhhHhcccEEEEec
Q 013385 392 NPGAWAFHCHIEPHFHIGMGVVLAL 416 (444)
Q Consensus 392 npG~w~~HCHi~~H~~~GM~~~~~~ 416 (444)
||.+.|+|= .|...||-..+.+
T Consensus 97 -~G~y~y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 97 -AGTYTYYCE--PHRGAGMVGKITV 118 (119)
T ss_pred -CEEEEEEcC--CCccCCcEEEEEE
Confidence 999999997 8999999988865
No 49
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=95.95 E-value=0.04 Score=47.28 Aligned_cols=75 Identities=12% Similarity=0.034 Sum_probs=44.5
Q ss_pred EEEEcCCCeEEEEEEecCcceeEEEEEcCcc--eEE-EEeCCccceeeEeeeEEecCCce--EEEEEecCCCCCcceEEE
Q 013385 98 ILHVQPNKTYRLRIASTTALASLNLAVKNHK--MVV-VEADGNYVQPFEVDDMDIYSGES--YSVLLTTNQDPSYNYWIS 172 (444)
Q Consensus 98 ~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~--~~v-ia~DG~~v~p~~v~~~~i~~GeR--~dV~v~~~~~~~g~y~i~ 172 (444)
.|++++|++++|++.|......+.|.|..+. +.. -.+||.+..+...-.-....|+. .++.+++++ +|.||..
T Consensus 53 ~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~--aGtywyh 130 (148)
T TIGR03095 53 TIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFST--AGTYWYL 130 (148)
T ss_pred EEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCC--CeEEEEE
Confidence 7999999999999999975333444444332 211 14677543211110001123544 478888875 7999997
Q ss_pred EE
Q 013385 173 AG 174 (444)
Q Consensus 173 ~~ 174 (444)
..
T Consensus 131 C~ 132 (148)
T TIGR03095 131 CT 132 (148)
T ss_pred cC
Confidence 44
No 50
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.33 E-value=0.05 Score=46.12 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=65.8
Q ss_pred EEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcC
Q 013385 312 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 391 (444)
Q Consensus 312 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~ad 391 (444)
..++.|++++.++.|.... -|=|=+= ++.... +.+... ....-..---..++.+.||....+-+.+.
T Consensus 65 ~~v~aG~tv~~v~~n~~el------~hef~~~---~~~~~~--~~~~~~--~~~~Dme~d~~~~v~L~PG~s~elvv~ft 131 (158)
T COG4454 65 FEVKAGETVRFVLKNEGEL------KHEFTMD---APDKNL--EHVTHM--ILADDMEHDDPNTVTLAPGKSGELVVVFT 131 (158)
T ss_pred ccccCCcEEeeeecCcccc------eEEEecc---Cccccc--hhHHHh--hhCCccccCCcceeEeCCCCcEEEEEEec
Confidence 7889999999999998776 5554443 111111 111100 00000111346899999999999999999
Q ss_pred CceeeEEeccChhhHhcccEEEEecc
Q 013385 392 NPGAWAFHCHIEPHFHIGMGVVLALG 417 (444)
Q Consensus 392 npG~w~~HCHi~~H~~~GM~~~~~~~ 417 (444)
++|.+-|-|=|-+|-+.||-..|.+.
T Consensus 132 ~~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 132 GAGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred CCccEEEEecCCCcccCCcEEEEEeC
Confidence 99999999999999999999888654
No 51
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=95.11 E-value=0.12 Score=41.43 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=40.6
Q ss_pred CceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEE
Q 013385 95 APQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA 173 (444)
Q Consensus 95 ~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~ 173 (444)
.|..+++++|+.++|.+.|.+... ..|.+++.. ....|.+|+...+.+.+.+ +|+|.+.-
T Consensus 33 ~P~~i~v~~G~~v~l~~~N~~~~~-h~~~i~~~~----------------~~~~l~~g~~~~~~f~~~~--~G~y~~~C 92 (104)
T PF13473_consen 33 SPSTITVKAGQPVTLTFTNNDSRP-HEFVIPDLG----------------ISKVLPPGETATVTFTPLK--PGEYEFYC 92 (104)
T ss_dssp ES-EEEEETTCEEEEEEEE-SSS--EEEEEGGGT----------------EEEEE-TT-EEEEEEEE-S---EEEEEB-
T ss_pred ecCEEEEcCCCeEEEEEEECCCCc-EEEEECCCc----------------eEEEECCCCEEEEEEcCCC--CEEEEEEc
Confidence 445899999999999999998775 566666621 2267889999999997765 78887743
No 52
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=92.58 E-value=1.3 Score=39.47 Aligned_cols=96 Identities=16% Similarity=0.108 Sum_probs=60.2
Q ss_pred eEEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCch----hhcccC--CCCCCccceEEeCCCcE
Q 013385 310 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE----DEKKFN--LKNPPLKNTAVIFPYGW 383 (444)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~----~~~~~n--~~~p~~rDTv~v~~~g~ 383 (444)
..+.++.|-.|.+++.|.+.+ .| .|-|+..+....... |.+.+. -..+.--..--|.+|..
T Consensus 86 m~i~VPAGw~V~i~f~N~~~l------~H-------nl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s 152 (196)
T PF06525_consen 86 MTIYVPAGWNVQITFTNQESL------PH-------NLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQS 152 (196)
T ss_pred EEEEEcCCCEEEEEEEcCCCC------Ce-------eEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCce
Confidence 358899999999999998766 44 577775432211110 111110 00010001112334555
Q ss_pred EEEEEEcCCceeeEEeccChhhHhcccEEEEeccc
Q 013385 384 TALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGV 418 (444)
Q Consensus 384 v~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~ 418 (444)
...-|..-.||.+.+=|=+.-|.+.||-..|.+..
T Consensus 153 ~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~ 187 (196)
T PF06525_consen 153 ASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSS 187 (196)
T ss_pred eeEEEccCCCceEEEEccCCChhhcCCEEEEEEec
Confidence 65556666799999999999999999999998764
No 53
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=92.55 E-value=0.71 Score=37.76 Aligned_cols=35 Identities=20% Similarity=0.499 Sum_probs=28.7
Q ss_pred CCcEEEEEEEcCCceeeEEeccChhhHhcccEEEEeccc
Q 013385 380 PYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGV 418 (444)
Q Consensus 380 ~~g~v~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~ 418 (444)
++....+.| +.+|.+-|+|= .|...||-..+.++.
T Consensus 54 ~g~~~~~tF--~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~ 88 (116)
T TIGR02375 54 INEEYTVTV--TEEGVYGVKCT--PHYGMGMVALIQVGD 88 (116)
T ss_pred CCCEEEEEe--CCCEEEEEEcC--CCccCCCEEEEEECC
Confidence 455555555 68999999998 999999999998776
No 54
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=92.43 E-value=0.68 Score=35.32 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=33.4
Q ss_pred eEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEecCCCC--CcceEEEE
Q 013385 97 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDP--SYNYWISA 173 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~--~g~y~i~~ 173 (444)
-++.+..|++|-|.|.|......++.| ++.-|+ +......|.|||...+-.+.+... +|+|.+.+
T Consensus 16 v~l~f~sgq~~D~~v~d~~g~~vwrwS-~~~~Ft-----------Qal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 16 VTLQFPSGQRYDFVVKDKEGKEVWRWS-DGKMFT-----------QALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEESSS--EEEEEE-TT--EEEETT-TT------------------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEeCCCCEEEEEEECCCCCEEEEec-CCchhh-----------heeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 345555666666655555544444433 222221 235678999999999999998754 79998864
No 55
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=91.91 E-value=2 Score=37.60 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=60.3
Q ss_pred eEEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCch-----hhcccCCC--CCCccceEEeCCCc
Q 013385 310 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE-----DEKKFNLK--NPPLKNTAVIFPYG 382 (444)
Q Consensus 310 ~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~-----~~~~~n~~--~p~~rDTv~v~~~g 382 (444)
..+-++.|-.|.++|.|...+ + |.+-++..+. .++.. |.+.+++. .+..-..=-+..|.
T Consensus 85 mtIyiPaGw~V~V~f~N~e~~------p-------Hnl~iv~n~t-~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gq 150 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNYESL------P-------HNLKLLPNST-QTPRGPIWAHTGKIINSTGATTSIYYGNGISSGH 150 (195)
T ss_pred eEEEEeCCCEEEEEEEcCCCC------C-------ccEEEecCCC-CCCCccccccCceeEeecccccCccccccccccc
Confidence 458899999999999998866 4 3555655432 11110 22222111 11111111223455
Q ss_pred EEEEEEEcCCceeeEEeccChhhHhcccEEEEeccc
Q 013385 383 WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGV 418 (444)
Q Consensus 383 ~v~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~ 418 (444)
...+-|.+-.||.+.+=|-+.-|.+.||-..+.+..
T Consensus 151 s~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 151 SRSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred eeEEEeccCCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 666667777899999999999999999998887654
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=91.73 E-value=1 Score=36.72 Aligned_cols=72 Identities=21% Similarity=0.259 Sum_probs=46.8
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|++|.|+-+... . .|-.. +.+.+.|+ .......+|+...+.|
T Consensus 43 ~ltV~~GdTVtw~~~~d~-~------~HnV~---------s~~~~~f~--------------s~~~~~~~G~t~s~Tf-- 90 (115)
T TIGR03102 43 AIRVDPGTTVVWEWTGEG-G------GHNVV---------SDGDGDLD--------------ESERVSEEGTTYEHTF-- 90 (115)
T ss_pred EEEECCCCEEEEEECCCC-C------CEEEE---------ECCCCCcc--------------ccccccCCCCEEEEEe--
Confidence 389999999999743221 2 45432 22223332 0112334566666666
Q ss_pred CCceeeEEeccChhhHhcccEEEEec
Q 013385 391 DNPGAWAFHCHIEPHFHIGMGVVLAL 416 (444)
Q Consensus 391 dnpG~w~~HCHi~~H~~~GM~~~~~~ 416 (444)
+.||.+.|+|= .|...||-..+.+
T Consensus 91 ~~~G~Y~Y~C~--pH~~~gM~G~I~V 114 (115)
T TIGR03102 91 EEPGIYLYVCV--PHEALGMKGAVVV 114 (115)
T ss_pred cCCcEEEEEcc--CCCCCCCEEEEEE
Confidence 67999999998 8999999988865
No 57
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=90.07 E-value=2.1 Score=32.59 Aligned_cols=70 Identities=20% Similarity=0.227 Sum_probs=42.7
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|++|.| .|.+.. .|-.+.+...+ +.. .+. ...+.++.... +++
T Consensus 12 ~i~v~~GdtVt~--~N~d~~------~Hnv~~~~g~~-------~~~-------------~~~-~~~~~~g~~~~--~tf 60 (83)
T TIGR02657 12 ELHVKVGDTVTW--INREAM------PHNVHFVAGVL-------GEA-------------ALK-GPMMKKEQAYS--LTF 60 (83)
T ss_pred EEEECCCCEEEE--EECCCC------CccEEecCCCC-------ccc-------------ccc-ccccCCCCEEE--EEC
Confidence 489999999988 466555 78877643211 100 111 12234555444 556
Q ss_pred CCceeeEEeccChhhHhcccEEEEe
Q 013385 391 DNPGAWAFHCHIEPHFHIGMGVVLA 415 (444)
Q Consensus 391 dnpG~w~~HCHi~~H~~~GM~~~~~ 415 (444)
+.||.|.|||=+ |- +|-..+.
T Consensus 61 ~~~G~y~y~C~~--Hp--~M~G~v~ 81 (83)
T TIGR02657 61 TEAGTYDYHCTP--HP--FMRGKVV 81 (83)
T ss_pred CCCEEEEEEcCC--CC--CCeEEEE
Confidence 789999999986 44 3666554
No 58
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=89.80 E-value=1.1 Score=35.36 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=39.4
Q ss_pred ceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCc-cce-eeEeeeEEecCCceEEEEEecCCCCCcceEEEE
Q 013385 96 PQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGN-YVQ-PFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA 173 (444)
Q Consensus 96 ~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~-~v~-p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~ 173 (444)
|..+.|++|++++|. |.+.. .+.+.++...+- +|. ... ....+.+.+.||+++++-++. +|.|.+.-
T Consensus 16 P~~i~v~~G~~V~~~--N~~~~-~H~~~~~~~~~~----~~~~~~~~~~~~~~~~~~pG~t~~~tF~~----~G~y~y~C 84 (99)
T TIGR02656 16 PAKISIAAGDTVEWV--NNKGG-PHNVVFDEDAVP----AGVKELAKSLSHKDLLNSPGESYEVTFST----PGTYTFYC 84 (99)
T ss_pred CCEEEECCCCEEEEE--ECCCC-CceEEECCCCCc----cchhhhcccccccccccCCCCEEEEEeCC----CEEEEEEc
Confidence 347999999998665 76532 234444322110 010 011 122356789999999996664 57887764
Q ss_pred E
Q 013385 174 G 174 (444)
Q Consensus 174 ~ 174 (444)
.
T Consensus 85 ~ 85 (99)
T TIGR02656 85 E 85 (99)
T ss_pred C
Confidence 3
No 59
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=89.42 E-value=2.9 Score=34.37 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=45.6
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|+.|.+.+.+.+. .|-|.+-+.... +.+.||....+.|++
T Consensus 47 ~l~lp~g~~v~~~ltS~DV-------iHsf~ip~~~~k---------------------------~d~~PG~~~~~~~~~ 92 (120)
T PF00116_consen 47 ELVLPAGQPVRFHLTSEDV-------IHSFWIPELGIK---------------------------MDAIPGRTNSVTFTP 92 (120)
T ss_dssp EEEEETTSEEEEEEEESSS--------EEEEETTCTEE---------------------------EEEBTTCEEEEEEEE
T ss_pred eecccccceEeEEEEcCCc-------cccccccccCcc---------------------------cccccccceeeeeee
Confidence 5899999999999999775 466665443322 334568888999999
Q ss_pred CCceeeEEeccChh
Q 013385 391 DNPGAWAFHCHIEP 404 (444)
Q Consensus 391 dnpG~w~~HCHi~~ 404 (444)
+.||.+-..|...=
T Consensus 93 ~~~G~y~~~C~e~C 106 (120)
T PF00116_consen 93 DKPGTYYGQCAEYC 106 (120)
T ss_dssp SSSEEEEEEE-SSS
T ss_pred ccCCcEEEcCcccc
Confidence 99999999998753
No 60
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=86.42 E-value=2.6 Score=38.11 Aligned_cols=69 Identities=28% Similarity=0.398 Sum_probs=50.6
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|+.|++.+.+.+. .|. |+|-+.+ ...| +-||....+.|++
T Consensus 118 ~l~vp~g~~v~~~~ts~DV-------~Hs-------f~ip~~~-----------------~k~d---a~PG~~~~~~~~~ 163 (201)
T TIGR02866 118 ELVVPAGTPVRLQVTSKDV-------IHS-------FWVPELG-----------------GKID---AIPGQYNALWFNA 163 (201)
T ss_pred EEEEEcCCEEEEEEEeCch-------hhc-------ccccccC-----------------ceEE---ecCCcEEEEEEEe
Confidence 3889999999999998764 344 5553322 2233 4578889999999
Q ss_pred CCceeeEEeccC---hhhHhcccEEEEe
Q 013385 391 DNPGAWAFHCHI---EPHFHIGMGVVLA 415 (444)
Q Consensus 391 dnpG~w~~HCHi---~~H~~~GM~~~~~ 415 (444)
+.||.+...|-- ..| ..|...+.
T Consensus 164 ~~~G~y~~~c~e~cG~~h--~~M~~~v~ 189 (201)
T TIGR02866 164 DEPGVYYGYCAELCGAGH--SLMLFKVV 189 (201)
T ss_pred CCCEEEEEEehhhCCcCc--cCCeEEEE
Confidence 999999999998 455 55666554
No 61
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=86.10 E-value=1.7 Score=37.00 Aligned_cols=75 Identities=15% Similarity=0.273 Sum_probs=52.4
Q ss_pred ceEEEEcCCCeEEEEEEecCcceeEEEEEc------CcceEEEEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcce
Q 013385 96 PQILHVQPNKTYRLRIASTTALASLNLAVK------NHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNY 169 (444)
Q Consensus 96 ~~~~~v~~g~~~RlRliNa~~~~~~~~~i~------~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y 169 (444)
+..+.++.|+++|+-+-|.+-.-. .|-++ +|.-..+.+| ..+--..+.+.|.||+.-.+++++.+ +|.|
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el~h-ef~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s~elvv~ft~--~g~y 136 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGELKH-EFTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKSGELVVVFTG--AGKY 136 (158)
T ss_pred CCcccccCCcEEeeeecCcccceE-EEeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCcEEEEEEecC--CccE
Confidence 456899999999999999986543 33333 2322333333 22334567899999999999999987 6889
Q ss_pred EEEEEe
Q 013385 170 WISAGV 175 (444)
Q Consensus 170 ~i~~~~ 175 (444)
.++...
T Consensus 137 e~~C~i 142 (158)
T COG4454 137 EFACNI 142 (158)
T ss_pred EEEecC
Confidence 886543
No 62
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=82.44 E-value=4.9 Score=35.79 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=48.1
Q ss_pred eEEEEcCCCeEEEEEEecCcceeEEEEE--cCc---ceEEEEeCCccce-e----eEeeeEEecCCceEEEEEecCCCCC
Q 013385 97 QILHVQPNKTYRLRIASTTALASLNLAV--KNH---KMVVVEADGNYVQ-P----FEVDDMDIYSGESYSVLLTTNQDPS 166 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~~~~~~~~i--~~h---~~~via~DG~~v~-p----~~v~~~~i~~GeR~dV~v~~~~~~~ 166 (444)
.+|.|..|-++.++++|.+...+ .|-| .+- ..-.+..||..+. + -....--|..||++..++... ++
T Consensus 86 m~i~VPAGw~V~i~f~N~~~l~H-nl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l--~a 162 (196)
T PF06525_consen 86 MTIYVPAGWNVQITFTNQESLPH-NLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDL--PA 162 (196)
T ss_pred EEEEEcCCCEEEEEEEcCCCCCe-eEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccC--CC
Confidence 47899999999999999986543 3333 222 2346778876551 1 111122467999998776533 36
Q ss_pred cceEEEE
Q 013385 167 YNYWISA 173 (444)
Q Consensus 167 g~y~i~~ 173 (444)
|.||+--
T Consensus 163 G~YwlvC 169 (196)
T PF06525_consen 163 GYYWLVC 169 (196)
T ss_pred ceEEEEc
Confidence 9999953
No 63
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=81.53 E-value=12 Score=27.89 Aligned_cols=66 Identities=26% Similarity=0.384 Sum_probs=32.2
Q ss_pred EcCCCe--EEEEEEecCcce--eEEEEEcCcceEEEEeCCccc--eeeEeeeEEecCCceEEEEE--ecCCC-CCcceEE
Q 013385 101 VQPNKT--YRLRIASTTALA--SLNLAVKNHKMVVVEADGNYV--QPFEVDDMDIYSGESYSVLL--TTNQD-PSYNYWI 171 (444)
Q Consensus 101 v~~g~~--~RlRliNa~~~~--~~~~~i~~h~~~via~DG~~v--~p~~v~~~~i~~GeR~dV~v--~~~~~-~~g~y~i 171 (444)
|++|+. +++.+-|.+... .+.++++ .-+|--+ .|..+. .|.+||...+-+ +.+.+ .+|+|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~-------~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLS-------LPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEe-------CCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 356766 478888988543 3444443 3455543 344444 889997665544 44443 4589999
Q ss_pred EEEe
Q 013385 172 SAGV 175 (444)
Q Consensus 172 ~~~~ 175 (444)
.+..
T Consensus 72 ~~~a 75 (78)
T PF10633_consen 72 TVTA 75 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 64
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=80.14 E-value=10 Score=31.49 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=44.7
Q ss_pred EEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcC
Q 013385 312 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 391 (444)
Q Consensus 312 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~ad 391 (444)
++++.|++|+|+ |.+.. .|-.+ ..+ ... |..-+++....+.....-|..
T Consensus 56 v~v~pGDTVtw~--~~d~~------~Hnv~-------~~~--~~~-------------~~g~~~~~~~~~~s~~~Tfe~- 104 (128)
T COG3794 56 VTVKPGDTVTWV--NTDSV------GHNVT-------AVG--GMD-------------PEGSGTLKAGINESFTHTFET- 104 (128)
T ss_pred EEECCCCEEEEE--ECCCC------CceEE-------EeC--CCC-------------cccccccccCCCcceEEEecc-
Confidence 899999999997 33332 44432 222 111 111233333334555555554
Q ss_pred CceeeEEeccChhhHhcccEEEEecc
Q 013385 392 NPGAWAFHCHIEPHFHIGMGVVLALG 417 (444)
Q Consensus 392 npG~w~~HCHi~~H~~~GM~~~~~~~ 417 (444)
||.+.|.| ..|...||-..+.++
T Consensus 105 -~G~Y~Y~C--~PH~~~gM~G~IvV~ 127 (128)
T COG3794 105 -PGEYTYYC--TPHPGMGMKGKIVVG 127 (128)
T ss_pred -cceEEEEe--ccCCCCCcEEEEEeC
Confidence 99999999 469999999888765
No 65
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=79.45 E-value=4.2 Score=37.49 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=50.6
Q ss_pred EEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcC
Q 013385 312 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 391 (444)
Q Consensus 312 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~ad 391 (444)
+.++.|+.|++.+...+.+ | .|+|-+-+ .++|.+ ||-...+.|+++
T Consensus 141 l~lP~g~pV~~~ltS~DVi-------H-------SF~VP~l~-----------------~K~Dai---PG~~n~~~~~~~ 186 (226)
T TIGR01433 141 IAFPVNTPINFKITSNSVM-------N-------SFFIPQLG-----------------SQIYAM---AGMQTKLHLIAN 186 (226)
T ss_pred EEEECCCEEEEEEEECchh-------h-------hhhhhhcC-----------------CeeecC---CCceEEEEEEeC
Confidence 7899999999999987754 3 57776543 446665 688888999999
Q ss_pred CceeeEEeccChhhHh-cccEEEE
Q 013385 392 NPGAWAFHCHIEPHFH-IGMGVVL 414 (444)
Q Consensus 392 npG~w~~HCHi~~H~~-~GM~~~~ 414 (444)
.||.+.-.|--.-=.. ..|...+
T Consensus 187 ~~G~y~g~CaE~CG~~Ha~M~~~V 210 (226)
T TIGR01433 187 EPGVYDGISANYSGPGFSGMKFKA 210 (226)
T ss_pred CCEEEEEEchhhcCcCccCCeEEE
Confidence 9999999997542221 3455444
No 66
>PRK02888 nitrous-oxide reductase; Validated
Probab=78.79 E-value=7.7 Score=41.01 Aligned_cols=60 Identities=17% Similarity=0.265 Sum_probs=38.9
Q ss_pred eEEEEcCCCeEEEEEEecCc--ceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEEE
Q 013385 97 QILHVQPNKTYRLRIASTTA--LASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAG 174 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~--~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~~ 174 (444)
..|.|+.|+.++|+|-|.-. .-.+-|.|.++. ++ +.+.||+.-.|-+++++ +|.||+.-.
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~n---------------I~-~dv~PG~t~svtF~adk--PGvy~~~Ct 616 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYG---------------VN-MEVAPQATASVTFTADK--PGVYWYYCT 616 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccccceeecccC---------------cc-EEEcCCceEEEEEEcCC--CEEEEEECC
Confidence 35667777777777776432 222344444443 22 45679999999999987 799998644
No 67
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=78.16 E-value=18 Score=29.85 Aligned_cols=76 Identities=25% Similarity=0.287 Sum_probs=47.6
Q ss_pred EEEEcC-CCeEEEEEEecCcce----eEEEEEc-CcceEEE-------EeCCccceee----EeeeEEecCCceEEEEEe
Q 013385 98 ILHVQP-NKTYRLRIASTTALA----SLNLAVK-NHKMVVV-------EADGNYVQPF----EVDDMDIYSGESYSVLLT 160 (444)
Q Consensus 98 ~~~v~~-g~~~RlRliNa~~~~----~~~~~i~-~h~~~vi-------a~DG~~v~p~----~v~~~~i~~GeR~dV~v~ 160 (444)
.|.|++ ++.+.+.|-|.|... .+++-|- .-.+.-| +.|-.||.+- -..+=.|.+||..+|-++
T Consensus 17 ~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF~ 96 (125)
T TIGR02695 17 SISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTFD 96 (125)
T ss_pred EEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEEE
Confidence 689998 488999999998542 2222221 1123222 2355566432 235568999999999999
Q ss_pred cCCC-CCcceEEEE
Q 013385 161 TNQD-PSYNYWISA 173 (444)
Q Consensus 161 ~~~~-~~g~y~i~~ 173 (444)
++.. ++++|...-
T Consensus 97 ~~~l~~g~~Y~f~C 110 (125)
T TIGR02695 97 VSKLSAGEDYTFFC 110 (125)
T ss_pred CCCCCCCCcceEEE
Confidence 8742 344687643
No 68
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=76.88 E-value=31 Score=26.46 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=41.9
Q ss_pred EEcCCCeE--EEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeE-EecCCceEEEEEecCCCCCcceEEEEEec
Q 013385 100 HVQPNKTY--RLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDM-DIYSGESYSVLLTTNQDPSYNYWISAGVR 176 (444)
Q Consensus 100 ~v~~g~~~--RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~-~i~~GeR~dV~v~~~~~~~g~y~i~~~~~ 176 (444)
.+.+|+.+ .+.+-|.|....-.+.+. +-.||..+ ....| .|++|+...+-+.......|.|.+++...
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD 84 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVID 84 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEES
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEEe
Confidence 34567775 577899987643333332 34566555 33444 78999999998888765678899888764
No 69
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=75.22 E-value=9.8 Score=32.89 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=43.8
Q ss_pred EEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcC
Q 013385 312 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 391 (444)
Q Consensus 312 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~ad 391 (444)
+.++.|+.+++.+...+. .|. |+|-+.+ ...|.+ ||....+.|.++
T Consensus 75 LvLP~g~~Vr~~lTS~DV-------IHS-------F~VP~lg-----------------vK~Dav---PGr~n~l~~~~~ 120 (162)
T PTZ00047 75 LTLPTRTHIRFLITATDV-------IHS-------WSVPSLG-----------------IKADAI---PGRLHKINTFIL 120 (162)
T ss_pred EEEeCCCEEEEEEEeCcc-------cee-------eeccccC-----------------ceeecc---CCceEEEEEecC
Confidence 789999999999987765 354 5554432 334443 677778889999
Q ss_pred CceeeEEeccChh
Q 013385 392 NPGAWAFHCHIEP 404 (444)
Q Consensus 392 npG~w~~HCHi~~ 404 (444)
.||.+...|.-.-
T Consensus 121 ~~G~y~gqCsElC 133 (162)
T PTZ00047 121 REGVFYGQCSEMC 133 (162)
T ss_pred CCeEEEEEcchhc
Confidence 9999999999653
No 70
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=74.75 E-value=23 Score=25.64 Aligned_cols=65 Identities=14% Similarity=0.296 Sum_probs=38.0
Q ss_pred eEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEEE
Q 013385 97 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAG 174 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~~ 174 (444)
..|.++.|+++++.+-+.+. +..|.|...+|..+....-.. -..+..--+.+.+. ++|+|.|++.
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~--~~GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP--AAGTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES--SSEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC--CCEEEEEEEE
Confidence 46889999999888866665 333667777765443321111 11122222334444 3789999875
No 71
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=74.35 E-value=6.6 Score=35.96 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=46.3
Q ss_pred EEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcC
Q 013385 312 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 391 (444)
Q Consensus 312 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~ad 391 (444)
+.++.|+.|++.+...+.+ | .|+|-+.+ .++|.+ ||-...+.|.++
T Consensus 132 l~iP~g~~v~~~ltS~DVi-------H-------sf~vP~l~-----------------~k~dai---PG~~~~~~~~~~ 177 (217)
T TIGR01432 132 LNIPKDRPVLFKLQSADTM-------T-------SFWIPQLG-----------------GQKYAM---TGMTMNWYLQAD 177 (217)
T ss_pred EEEECCCEEEEEEECCchh-------h-------hhhchhhC-----------------ceeecC---CCceEEEEEEeC
Confidence 7899999999999987754 3 57775543 456665 688889999999
Q ss_pred CceeeEEeccCh
Q 013385 392 NPGAWAFHCHIE 403 (444)
Q Consensus 392 npG~w~~HCHi~ 403 (444)
.||.+--.|=-.
T Consensus 178 ~~G~y~g~Cae~ 189 (217)
T TIGR01432 178 QVGTYRGRNANF 189 (217)
T ss_pred CCEEEEEEehhh
Confidence 999999999743
No 72
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=73.41 E-value=28 Score=27.08 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=42.7
Q ss_pred EcCCCeEEEEEE--ecCcceeEEEEEcCc--ceEEEEeCCccceeeEeeeEEecCCceEEEEEecCCCC-CcceEEEEEe
Q 013385 101 VQPNKTYRLRIA--STTALASLNLAVKNH--KMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDP-SYNYWISAGV 175 (444)
Q Consensus 101 v~~g~~~RlRli--Na~~~~~~~~~i~~h--~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~-~g~y~i~~~~ 175 (444)
-+||+++.||.+ +.... . -...++ .++|..-+|..+.-... ........++.-+.++.+. .|.|.|++..
T Consensus 11 YrPGetV~~~~~~~~~~~~-~--~~~~~~~~~v~i~dp~g~~v~~~~~--~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDND-F--KPPANSPVTVTIKDPSGNEVFRWSV--NTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp E-TTSEEEEEEEEEEECTT-C--SCESSEEEEEEEEETTSEEEEEEEE--EETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred cCCCCEEEEEEEEeccccc-c--ccccCCceEEEEECCCCCEEEEEEe--eeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 479999999998 65521 0 011222 36667777766633222 2346788888888888753 5999999887
Q ss_pred c
Q 013385 176 R 176 (444)
Q Consensus 176 ~ 176 (444)
.
T Consensus 86 ~ 86 (99)
T PF01835_consen 86 D 86 (99)
T ss_dssp T
T ss_pred c
Confidence 4
No 73
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=72.02 E-value=13 Score=26.77 Aligned_cols=47 Identities=26% Similarity=0.476 Sum_probs=31.8
Q ss_pred EEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEE
Q 013385 99 LHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSV 157 (444)
Q Consensus 99 ~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV 157 (444)
+.+.+|+..+||.-.+. .|.+.+-.++|.. +| ..+-+.|.+||++.+
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g------~~~D~~L~~G~~l~l 48 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EG------DPDDYWLQAGDSLRL 48 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CC------CCCCEEECCCCEEEe
Confidence 56778999999865433 4777777888764 55 345566777777643
No 74
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=71.71 E-value=17 Score=34.03 Aligned_cols=59 Identities=27% Similarity=0.406 Sum_probs=45.3
Q ss_pred EEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcC
Q 013385 312 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 391 (444)
Q Consensus 312 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~ad 391 (444)
+.++.|+.|++.+...+.+ | .|+|-+-+ --+.+-||-...+.+.++
T Consensus 139 l~lPv~~~V~f~ltS~DVi-------H-------sF~IP~l~--------------------~k~d~iPG~~~~~~~~~~ 184 (247)
T COG1622 139 LVLPVGRPVRFKLTSADVI-------H-------SFWIPQLG--------------------GKIDAIPGMTTELWLTAN 184 (247)
T ss_pred EEEeCCCeEEEEEEechhc-------e-------eEEecCCC--------------------ceeeecCCceEEEEEecC
Confidence 8999999999999987754 4 46665432 223344677788999999
Q ss_pred CceeeEEeccChh
Q 013385 392 NPGAWAFHCHIEP 404 (444)
Q Consensus 392 npG~w~~HCHi~~ 404 (444)
.||.+..+|+..-
T Consensus 185 ~~G~Y~g~Cae~C 197 (247)
T COG1622 185 KPGTYRGICAEYC 197 (247)
T ss_pred CCeEEEEEcHhhc
Confidence 9999999999864
No 75
>PRK02710 plastocyanin; Provisional
Probab=70.07 E-value=18 Score=29.61 Aligned_cols=60 Identities=15% Similarity=0.250 Sum_probs=37.0
Q ss_pred ceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEEE
Q 013385 96 PQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAG 174 (444)
Q Consensus 96 ~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~~ 174 (444)
|..+++++|++++| +|.+.. .+++.+++. +......+.+.+|+.+++.++. +|.|...-.
T Consensus 46 P~~i~v~~Gd~V~~--~N~~~~-~H~v~~~~~------------~~~~~~~~~~~pg~t~~~tF~~----~G~y~y~C~ 105 (119)
T PRK02710 46 PSTLTIKAGDTVKW--VNNKLA-PHNAVFDGA------------KELSHKDLAFAPGESWEETFSE----AGTYTYYCE 105 (119)
T ss_pred CCEEEEcCCCEEEE--EECCCC-CceEEecCC------------ccccccccccCCCCEEEEEecC----CEEEEEEcC
Confidence 35799999998776 465432 234444321 1112234678999999977774 478766543
No 76
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=69.77 E-value=20 Score=29.44 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=42.3
Q ss_pred eEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEEE
Q 013385 97 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAG 174 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~~ 174 (444)
..+.++.|+.++|++-+.... +.|+|.+..+++ .+-||+.-.+-+++++ +|.|+++-.
T Consensus 46 ~~l~lp~g~~v~~~ltS~DVi--Hsf~ip~~~~k~----------------d~~PG~~~~~~~~~~~--~G~y~~~C~ 103 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSEDVI--HSFWIPELGIKM----------------DAIPGRTNSVTFTPDK--PGTYYGQCA 103 (120)
T ss_dssp SEEEEETTSEEEEEEEESSS---EEEEETTCTEEE----------------EEBTTCEEEEEEEESS--SEEEEEEE-
T ss_pred ceecccccceEeEEEEcCCcc--ccccccccCccc----------------ccccccceeeeeeecc--CCcEEEcCc
Confidence 479999999999999986544 456667665432 3447888888888876 789998765
No 77
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=67.17 E-value=27 Score=27.33 Aligned_cols=64 Identities=23% Similarity=0.306 Sum_probs=39.1
Q ss_pred ceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccc--eee----EeeeEEecCCceEEEEEecCCCCCcce
Q 013385 96 PQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV--QPF----EVDDMDIYSGESYSVLLTTNQDPSYNY 169 (444)
Q Consensus 96 ~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v--~p~----~v~~~~i~~GeR~dV~v~~~~~~~g~y 169 (444)
|..|+|++|++++| +|.... +|++++.+ |+... +.. .-....+.+||.+++-++ + +|.|
T Consensus 16 P~~i~V~~G~tV~~--~n~~~~--------~Hnv~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~--~--~G~y 80 (99)
T PF00127_consen 16 PSEITVKAGDTVTF--VNNDSM--------PHNVVFVA-DGMPAGADSDYVPPGDSSPLLAPGETYSVTFT--K--PGTY 80 (99)
T ss_dssp SSEEEEETTEEEEE--EEESSS--------SBEEEEET-TSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE--S--SEEE
T ss_pred CCEEEECCCCEEEE--EECCCC--------CceEEEec-ccccccccccccCccccceecCCCCEEEEEeC--C--CeEE
Confidence 45899999998765 554211 24443333 33221 111 115678999999999888 3 5888
Q ss_pred EEEEE
Q 013385 170 WISAG 174 (444)
Q Consensus 170 ~i~~~ 174 (444)
...-.
T Consensus 81 ~y~C~ 85 (99)
T PF00127_consen 81 EYYCT 85 (99)
T ss_dssp EEEET
T ss_pred EEEcC
Confidence 77544
No 78
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=64.55 E-value=19 Score=32.38 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=44.5
Q ss_pred EEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcC
Q 013385 312 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 391 (444)
Q Consensus 312 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~ad 391 (444)
+.++.|+.+++.+...+-+ |- |+|-+-+ .+.|.+ ||....+.|.++
T Consensus 118 l~lp~g~~v~~~ltS~DVi-------Hs-------f~vp~l~-----------------~k~d~~---PG~~~~~~~~~~ 163 (194)
T MTH00047 118 LRLVYGVPYHLLVTSSDVI-------HS-------FSVPDLN-----------------LKMDAI---PGRINHLFFCPD 163 (194)
T ss_pred EEEeCCCEEEeeeecCccc-------cc-------eeccccC-----------------ceeecC---CCceEEEEEEcC
Confidence 7899999999999877653 54 4454332 234443 688889999999
Q ss_pred CceeeEEeccChh
Q 013385 392 NPGAWAFHCHIEP 404 (444)
Q Consensus 392 npG~w~~HCHi~~ 404 (444)
.||.+..-|.-.-
T Consensus 164 ~~G~y~g~C~e~C 176 (194)
T MTH00047 164 RHGVFVGYCSELC 176 (194)
T ss_pred CCEEEEEEeehhh
Confidence 9999999998653
No 79
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=63.00 E-value=24 Score=32.52 Aligned_cols=60 Identities=17% Similarity=0.314 Sum_probs=47.0
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|+.+++.+...+.. | .|+|-+-| .++|.+ ||....+.|.+
T Consensus 141 ~l~lP~~~~v~~~~tS~DVi-------H-------sf~vP~l~-----------------~K~Dai---PG~~n~~~~~~ 186 (226)
T MTH00139 141 RLVLPYKSNIRALITAADVL-------H-------SWTVPSLG-----------------VKIDAV---PGRLNQVGFFI 186 (226)
T ss_pred eEEEecCCEEEEEEecCccc-------c-------ceeccccC-----------------ccccCC---CCcEEEEEEEc
Confidence 48899999999999887753 4 56666553 456765 57778899999
Q ss_pred CCceeeEEeccChh
Q 013385 391 DNPGAWAFHCHIEP 404 (444)
Q Consensus 391 dnpG~w~~HCHi~~ 404 (444)
+.||.+.--|--.-
T Consensus 187 ~~~G~y~g~CsE~C 200 (226)
T MTH00139 187 NRPGVFYGQCSEIC 200 (226)
T ss_pred CCCEEEEEEChhhc
Confidence 99999999997654
No 80
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=62.94 E-value=70 Score=24.86 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=39.8
Q ss_pred EEcCCCeE--EEEEEecCcce-eEEEEEcCc---ceEEEEeCCccceeeEeeeEEecCCceEEEEEecC-CCCCcceEEE
Q 013385 100 HVQPNKTY--RLRIASTTALA-SLNLAVKNH---KMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTN-QDPSYNYWIS 172 (444)
Q Consensus 100 ~v~~g~~~--RlRliNa~~~~-~~~~~i~~h---~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~-~~~~g~y~i~ 172 (444)
.+..|++| .+.|.|.|... .|++..... .+.| +| ..-.|+||+..++-|++. ..+.|.|.-.
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~~~ 83 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYEGS 83 (102)
T ss_pred EEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEEEE
Confidence 46678887 69999999663 345554431 1111 22 234589999999999887 4445666544
Q ss_pred E
Q 013385 173 A 173 (444)
Q Consensus 173 ~ 173 (444)
.
T Consensus 84 l 84 (102)
T PF14874_consen 84 L 84 (102)
T ss_pred E
Confidence 3
No 81
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=61.08 E-value=87 Score=25.30 Aligned_cols=22 Identities=14% Similarity=0.350 Sum_probs=11.6
Q ss_pred eEeeeEEecCCceEEEEEecCC
Q 013385 142 FEVDDMDIYSGESYSVLLTTNQ 163 (444)
Q Consensus 142 ~~v~~~~i~~GeR~dV~v~~~~ 163 (444)
.....+.|.+|..|.+++.-..
T Consensus 62 l~~~~i~l~~g~~yTl~~~g~~ 83 (122)
T PF14344_consen 62 LLSTTITLEAGKSYTLFAVGTA 83 (122)
T ss_pred EEeccEEEcCCCEEEEEEECCC
Confidence 3444555555555555555543
No 82
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=58.26 E-value=30 Score=32.00 Aligned_cols=60 Identities=17% Similarity=0.323 Sum_probs=46.5
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|+.+++.+...+.. |.|+|-+.| .+.|.+ ||....+.|.+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi--------------Hsf~ip~~~-----------------~k~da~---PG~~~~~~~~~ 186 (230)
T MTH00129 141 RMVVPVESPIRVLVSAEDVL--------------HSWAVPALG-----------------VKMDAV---PGRLNQTAFIA 186 (230)
T ss_pred eEEEecCcEEEEEEEeCccc--------------cceeccccC-----------------CccccC---CCceEEEEEEe
Confidence 47899999999999877643 457776654 334544 68888889999
Q ss_pred CCceeeEEeccChh
Q 013385 391 DNPGAWAFHCHIEP 404 (444)
Q Consensus 391 dnpG~w~~HCHi~~ 404 (444)
+.||.+...|.-.-
T Consensus 187 ~~~G~~~g~C~e~C 200 (230)
T MTH00129 187 SRPGVFYGQCSEIC 200 (230)
T ss_pred CCceEEEEEChhhc
Confidence 99999999998753
No 83
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=56.91 E-value=34 Score=31.54 Aligned_cols=70 Identities=21% Similarity=0.274 Sum_probs=49.3
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|+.|++.+.+.+. .|- |+|-+.| ...| +-||....+.|.+
T Consensus 141 ~l~lP~~~~v~~~~ts~DV-------iHs-------f~ip~~~-----------------~k~d---~~Pg~~~~~~~~~ 186 (228)
T MTH00140 141 RLVLPYSVDTRVLVTSADV-------IHS-------WTVPSLG-----------------VKVD---AIPGRLNQLSFEP 186 (228)
T ss_pred eEEEeeCcEEEEEEEcCcc-------ccc-------eeccccC-----------------ceeE---CCCCcceeEEEEe
Confidence 4789999999999998764 344 5554432 2233 3467888899999
Q ss_pred CCceeeEEeccChhhHhc-ccEEEE
Q 013385 391 DNPGAWAFHCHIEPHFHI-GMGVVL 414 (444)
Q Consensus 391 dnpG~w~~HCHi~~H~~~-GM~~~~ 414 (444)
+.||.+...|.-.-.... .|-..+
T Consensus 187 ~~~g~y~~~C~e~CG~~H~~M~~~v 211 (228)
T MTH00140 187 KRPGVFYGQCSEICGANHSFMPIVV 211 (228)
T ss_pred CCCEEEEEECccccCcCcCCCeEEE
Confidence 999999999997755433 344444
No 84
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=56.58 E-value=89 Score=25.85 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=42.4
Q ss_pred EEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccc-------eeeEeeeEEecCCceEEEEEecCC
Q 013385 98 ILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV-------QPFEVDDMDIYSGESYSVLLTTNQ 163 (444)
Q Consensus 98 ~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v-------~p~~v~~~~i~~GeR~dV~v~~~~ 163 (444)
.|.+...-.|+|++-.-+ ..+|.|+|.. ||..++..- .+.....+.+..|++|+|-|+..+
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~--vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKL--VIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEE--EEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEE--EEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 366666677999988433 4678899886 577776543 455667788889999998888765
No 85
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=55.43 E-value=41 Score=31.33 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=48.5
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|+.|++.+...+.. |- |+|-+.| .++|.+ ||....+.|.+
T Consensus 152 ~lvlP~~~~v~~~~tS~DVi-------Hs-------f~iP~lg-----------------vK~Dai---PG~~n~~~~~~ 197 (240)
T MTH00023 152 RLVVPINTHVRILVTGADVL-------HS-------FAVPSLG-----------------LKIDAV---PGRLNQTGFFI 197 (240)
T ss_pred eEEEecCCEEEEEEEcCCcc-------cc-------eeecccC-----------------ceeecC---CCcceeEEEEc
Confidence 48899999999999887653 44 5555443 345554 56777889999
Q ss_pred CCceeeEEeccChhhHhcccE
Q 013385 391 DNPGAWAFHCHIEPHFHIGMG 411 (444)
Q Consensus 391 dnpG~w~~HCHi~~H~~~GM~ 411 (444)
+.||.+.-.|.-.--.....|
T Consensus 198 ~~~G~y~g~C~e~CG~~Hs~M 218 (240)
T MTH00023 198 KRPGVFYGQCSEICGANHSFM 218 (240)
T ss_pred CCCEEEEEEchhhcCcCccCC
Confidence 999999999987654443433
No 86
>COG1470 Predicted membrane protein [Function unknown]
Probab=55.37 E-value=1.1e+02 Score=31.36 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=53.1
Q ss_pred ceEEEEcCCCe--EEEEEEecCcc--eeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCce--EEEEEecCCC-CCcc
Q 013385 96 PQILHVQPNKT--YRLRIASTTAL--ASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGES--YSVLLTTNQD-PSYN 168 (444)
Q Consensus 96 ~~~~~v~~g~~--~RlRliNa~~~--~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR--~dV~v~~~~~-~~g~ 168 (444)
+..+++.+|+- .|+++-|.|.. ..+.+.|++-.=|=|.+|+.-+ + .|.|||| .++-++++.+ .+|+
T Consensus 388 ~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~aGd 460 (513)
T COG1470 388 PYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAGAGD 460 (513)
T ss_pred cEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCCCCc
Confidence 35678888854 69999999965 5578888887778888888743 2 2345554 4556666654 4589
Q ss_pred eEEEEEecCC
Q 013385 169 YWISAGVRGR 178 (444)
Q Consensus 169 y~i~~~~~~~ 178 (444)
|.++.....+
T Consensus 461 Y~i~i~~ksD 470 (513)
T COG1470 461 YRITITAKSD 470 (513)
T ss_pred EEEEEEEeec
Confidence 9998876554
No 87
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=55.17 E-value=23 Score=34.33 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=49.8
Q ss_pred EEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcC
Q 013385 312 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 391 (444)
Q Consensus 312 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~ad 391 (444)
+.++.|..|++.+...+.+ |.|+|-+-+ ...|.+ ||-...+.|.+|
T Consensus 153 L~iP~g~pV~f~lTS~DVi--------------HSF~IP~Lg-----------------~K~dam---PG~~n~l~~~a~ 198 (315)
T PRK10525 153 IAFPANVPVYFKVTSNSVM--------------NSFFIPRLG-----------------SQIYAM---AGMQTRLHLIAN 198 (315)
T ss_pred EEEecCCEEEEEEEEchhh--------------hhhhhhhhC-----------------CeeecC---CCceeEEEEEcC
Confidence 7899999999999987754 357776543 334544 677788999999
Q ss_pred CceeeEEeccChhhH-hcccEEEE
Q 013385 392 NPGAWAFHCHIEPHF-HIGMGVVL 414 (444)
Q Consensus 392 npG~w~~HCHi~~H~-~~GM~~~~ 414 (444)
.||.|.-.|--.-=. ...|...+
T Consensus 199 ~~G~Y~G~CaEyCG~gHs~M~f~v 222 (315)
T PRK10525 199 EPGTYDGISASYSGPGFSGMKFKA 222 (315)
T ss_pred CCEEEEEEChhhcCccccCCeEEE
Confidence 999999999754311 24455544
No 88
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=54.72 E-value=50 Score=26.71 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=28.1
Q ss_pred eEEEEEEecCcc-eeEEEEEcCcc-eEEEEeCCccceeeEeeeEEecCCceEEEEEecC
Q 013385 106 TYRLRIASTTAL-ASLNLAVKNHK-MVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTN 162 (444)
Q Consensus 106 ~~RlRliNa~~~-~~~~~~i~~h~-~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~ 162 (444)
.|+|+|+|-+.. ..|.|+++|.+ +++. . ....+.|++|+..++-|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~-------~--~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ-------G--PENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE--------E--S--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE-------C--CCcceEECCCCEEEEEEEEE
Confidence 489999999977 55888888753 3331 1 34667888888776655543
No 89
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=54.28 E-value=36 Score=31.40 Aligned_cols=60 Identities=23% Similarity=0.395 Sum_probs=45.7
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|+.+++.+...+.. | .|+|-+.| .++|.+ ||....+.|.+
T Consensus 141 ~l~lP~~~~v~~~~tS~DVi-------H-------sf~vp~l~-----------------~k~dav---PG~~~~~~~~~ 186 (227)
T MTH00154 141 RLVLPMNTQIRILITAADVI-------H-------SWTVPSLG-----------------VKVDAV---PGRLNQLNFLI 186 (227)
T ss_pred eEEEecCCEEEEEEEcCchh-------h-------heeccccC-----------------CeeecC---CCceEEEEEEE
Confidence 47899999999999877653 4 45565443 345654 67788899999
Q ss_pred CCceeeEEeccChh
Q 013385 391 DNPGAWAFHCHIEP 404 (444)
Q Consensus 391 dnpG~w~~HCHi~~ 404 (444)
+.||.+.--|--.=
T Consensus 187 ~~~G~y~g~Cse~C 200 (227)
T MTH00154 187 NRPGLFFGQCSEIC 200 (227)
T ss_pred cCceEEEEEeechh
Confidence 99999999998653
No 90
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=53.60 E-value=45 Score=30.80 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=49.5
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|+.+++.+...+.. | .|+|-+-| .+.|.+ ||....+.|.+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi-------H-------sf~iP~lg-----------------~k~dai---PG~~~~~~~~~ 186 (229)
T MTH00038 141 RLVLPYQTPIRVLVSSADVL-------H-------SWAVPSLG-----------------VKMDAV---PGRLNQTTFFI 186 (229)
T ss_pred eEEEecCeEEEEEEEECCcc-------c-------cccccccC-----------------ceeecC---CCceEEEEEEc
Confidence 47899999999999887753 4 35554443 345554 67778889999
Q ss_pred CCceeeEEeccChhhHhcccEE
Q 013385 391 DNPGAWAFHCHIEPHFHIGMGV 412 (444)
Q Consensus 391 dnpG~w~~HCHi~~H~~~GM~~ 412 (444)
+.||.+...|--.--.....|-
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~ 208 (229)
T MTH00038 187 SRTGLFYGQCSEICGANHSFMP 208 (229)
T ss_pred CCCEEEEEEcccccCcCcCCCe
Confidence 9999999999876544444443
No 91
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=53.27 E-value=54 Score=30.24 Aligned_cols=70 Identities=16% Similarity=0.279 Sum_probs=50.0
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|+.|++.+...+.. |.|+|-+-| .+.|.+ ||....+.|.+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi--------------Hsf~ip~lg-----------------~k~dai---PG~~~~~~~~~ 186 (227)
T MTH00098 141 RVVLPMEMPIRMLISSEDVL--------------HSWAVPSLG-----------------LKTDAI---PGRLNQTTLMS 186 (227)
T ss_pred eEEecCCCEEEEEEEECccc--------------ccccccccc-----------------cceecC---CCceEEEEEec
Confidence 47899999999999887653 346665543 334543 68888889999
Q ss_pred CCceeeEEeccChhhHhcc-cEEEE
Q 013385 391 DNPGAWAFHCHIEPHFHIG-MGVVL 414 (444)
Q Consensus 391 dnpG~w~~HCHi~~H~~~G-M~~~~ 414 (444)
+.||.+..-|.-.-..... |-..+
T Consensus 187 ~~~G~~~g~Cse~CG~~H~~M~~~v 211 (227)
T MTH00098 187 TRPGLYYGQCSEICGSNHSFMPIVL 211 (227)
T ss_pred CCcEEEEEECccccCcCcCCceEEE
Confidence 9999999999876544333 44333
No 92
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=52.02 E-value=1.1e+02 Score=25.22 Aligned_cols=60 Identities=17% Similarity=0.302 Sum_probs=37.3
Q ss_pred EEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccc-eeeEeeeEEecCCceEEEEEecCC
Q 013385 99 LHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV-QPFEVDDMDIYSGESYSVLLTTNQ 163 (444)
Q Consensus 99 ~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v-~p~~v~~~~i~~GeR~dV~v~~~~ 163 (444)
|.+...-.|+|.+...+ ..+|.|+|.. ||..++..- .+.....+.+..|++|.|.|+..+
T Consensus 52 i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 52 LKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred EECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEe
Confidence 55555556999885433 4578888863 455444322 223345677888888888887755
No 93
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=50.28 E-value=44 Score=30.81 Aligned_cols=67 Identities=12% Similarity=0.269 Sum_probs=49.0
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|+.+++.+...+.. |.|+|-+-| .+.|.+ ||....+.|.+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi--------------Hsf~vP~lg-----------------~K~Dav---PG~~n~~~~~~ 186 (227)
T MTH00117 141 RMVIPMESPIRILITAEDVL--------------HSWAVPSLG-----------------VKTDAV---PGRLNQTSFIT 186 (227)
T ss_pred eEEEecCceEEEEEEecchh--------------hcccccccC-----------------ceeEec---CCceEEEEEEE
Confidence 47899999999999887653 356665543 334544 67888889999
Q ss_pred CCceeeEEeccChhhHhcccE
Q 013385 391 DNPGAWAFHCHIEPHFHIGMG 411 (444)
Q Consensus 391 dnpG~w~~HCHi~~H~~~GM~ 411 (444)
+.||.+.--|--.=......|
T Consensus 187 ~~~G~y~g~CsE~CG~~Hs~M 207 (227)
T MTH00117 187 TRPGVFYGQCSEICGANHSFM 207 (227)
T ss_pred cccceEEEEeccccccCccCC
Confidence 999999999987554433333
No 94
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=49.94 E-value=62 Score=29.92 Aligned_cols=67 Identities=13% Similarity=0.251 Sum_probs=48.4
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|+.+++.+...+.. |.|+|-+-| .+.|.+ ||....+.|.+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi--------------Hsf~iP~lg-----------------~k~dai---PG~~~~~~~~~ 186 (230)
T MTH00185 141 RMVVPMESPIRVLITAEDVL--------------HSWTVPALG-----------------VKMDAV---PGRLNQATFII 186 (230)
T ss_pred eEEEecCCEEEEEEEcCccc--------------ccccccccC-----------------ceeEec---CCceEEEEEEe
Confidence 47899999999999887643 346665543 334443 67778888999
Q ss_pred CCceeeEEeccChhhHhcccE
Q 013385 391 DNPGAWAFHCHIEPHFHIGMG 411 (444)
Q Consensus 391 dnpG~w~~HCHi~~H~~~GM~ 411 (444)
+.||.+.--|.-.=......|
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M 207 (230)
T MTH00185 187 SRPGLYYGQCSEICGANHSFM 207 (230)
T ss_pred CCcEEEEEEchhhcCcCcCCC
Confidence 999999999998654433433
No 95
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=49.76 E-value=50 Score=30.41 Aligned_cols=60 Identities=18% Similarity=0.377 Sum_probs=46.0
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|+.+++.++..+.. | .|+|-+.| .+.|.+ ||....+.|.+
T Consensus 141 ~l~lP~~~~v~~~~tS~DVi-------H-------sf~vP~lg-----------------~k~dai---PG~~n~~~~~~ 186 (225)
T MTH00168 141 RLVLPMDSKIRVLVTSADVL-------H-------SWTLPSLG-----------------LKMDAV---PGRLNQLAFLS 186 (225)
T ss_pred eEEEecCCEEEEEEEeCChh-------h-------cccccccc-----------------ccccCC---CCeEEEEEEEc
Confidence 47899999999999987753 4 45565443 345654 67778889999
Q ss_pred CCceeeEEeccChh
Q 013385 391 DNPGAWAFHCHIEP 404 (444)
Q Consensus 391 dnpG~w~~HCHi~~ 404 (444)
+.||.+..-|.-.-
T Consensus 187 ~~~G~~~g~CsE~C 200 (225)
T MTH00168 187 SRPGSFYGQCSEIC 200 (225)
T ss_pred CCCEEEEEEccccc
Confidence 99999999998653
No 96
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=48.41 E-value=49 Score=30.60 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=48.9
Q ss_pred EEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcC
Q 013385 312 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 391 (444)
Q Consensus 312 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~ad 391 (444)
+.++.|+.+++.+...+.. | .|+|-+-| .+.|.+ ||....+.|.++
T Consensus 145 l~lP~~~~v~~~itS~DVi-------H-------Sf~vP~lg-----------------~K~Dav---PGr~n~~~~~~~ 190 (231)
T MTH00080 145 CVLPCDTNIRFCITSSDVI-------H-------SWALPSLS-----------------IKMDAM---SGILSTLCYSFP 190 (231)
T ss_pred eEeecCcEEEEEEEeCccc-------c-------cccccccC-----------------ceeecc---CCceEEEEEEEc
Confidence 7899999999999987753 4 45665543 445655 577778899999
Q ss_pred CceeeEEeccChhhHh-cccEEEE
Q 013385 392 NPGAWAFHCHIEPHFH-IGMGVVL 414 (444)
Q Consensus 392 npG~w~~HCHi~~H~~-~GM~~~~ 414 (444)
.||.+.--|--.==.. .-|-..+
T Consensus 191 ~~G~y~g~CsE~CG~~Hs~M~~~v 214 (231)
T MTH00080 191 MPGVFYGQCSEICGANHSFMPIAV 214 (231)
T ss_pred CceEEEEEehhhcCcCccCCEEEE
Confidence 9999999998543221 3454444
No 97
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=48.06 E-value=1.4e+02 Score=25.31 Aligned_cols=64 Identities=27% Similarity=0.310 Sum_probs=44.2
Q ss_pred CeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEe-------eeEEecCCceE-EEEEecCCCCCcceEEEEE
Q 013385 105 KTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEV-------DDMDIYSGESY-SVLLTTNQDPSYNYWISAG 174 (444)
Q Consensus 105 ~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v-------~~~~i~~GeR~-dV~v~~~~~~~g~y~i~~~ 174 (444)
.+|-|-+-|.|... +.++...++|+ +||..+.|-.+ +.+.|.|||=- .+.+.-.. .|...+.+.
T Consensus 70 ~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~l--SGyhri~V~ 141 (154)
T COG3354 70 YTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEAL--SGYHRIVVS 141 (154)
T ss_pred eEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccCC--CcceEEEEE
Confidence 46788888988764 47889999998 99999876544 34678899976 44444433 454445444
No 98
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=47.27 E-value=72 Score=24.73 Aligned_cols=48 Identities=25% Similarity=0.477 Sum_probs=24.9
Q ss_pred eEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeE----e-eeEEecCCceEEE
Q 013385 106 TYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFE----V-DDMDIYSGESYSV 157 (444)
Q Consensus 106 ~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~----v-~~~~i~~GeR~dV 157 (444)
.|++||-|.+... +.+-.....|...||..- -+. | ..=.|.|||.|..
T Consensus 15 ~Y~I~I~N~~~~~---vqL~sR~W~I~d~~g~~~-~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDES---VQLLSRHWIITDADGHVE-EVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EE-EEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCCC---EEEEccEEEEEeCCCCEE-EEECCceEccCceECCCCcEEE
Confidence 3789999988773 455555555555555321 111 1 2336888887654
No 99
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=46.11 E-value=61 Score=30.05 Aligned_cols=61 Identities=20% Similarity=0.288 Sum_probs=45.1
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|+.+++.+.+.+.. | .|+|-+-| .+.|.+ ||....+.|.+
T Consensus 145 ~lvlP~~~~v~~~itS~DVi-------H-------sf~vp~lg-----------------~k~dai---PG~~~~~~~~~ 190 (234)
T MTH00051 145 RLIVPIQTQVRVLVTAADVL-------H-------SFAVPSLS-----------------VKIDAV---PGRLNQTSFFI 190 (234)
T ss_pred EEEEecCcEEEEEEEeCchh-------c-------cccccccC-----------------ceeEcc---CCceEeEEEEe
Confidence 47899999999999987653 4 45554443 334443 67777889999
Q ss_pred CCceeeEEeccChhh
Q 013385 391 DNPGAWAFHCHIEPH 405 (444)
Q Consensus 391 dnpG~w~~HCHi~~H 405 (444)
+.||.+..-|.-.=-
T Consensus 191 ~~~G~y~g~Cse~CG 205 (234)
T MTH00051 191 KRPGVFYGQCSEICG 205 (234)
T ss_pred CCCEEEEEEChhhcC
Confidence 999999999987543
No 100
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.78 E-value=61 Score=30.59 Aligned_cols=70 Identities=21% Similarity=0.291 Sum_probs=50.0
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|..+++.+...+.. | .|+|-+.| .++|.+ ||..-.+.|.+
T Consensus 175 ~lvlP~~~~v~~~ltS~DVi-------H-------Sf~vP~lg-----------------vK~Dai---PGr~n~~~~~~ 220 (262)
T MTH00027 175 RLILPVDTNVRVLITAADVL-------H-------SWTVPSLA-----------------VKMDAV---PGRINETGFLI 220 (262)
T ss_pred eEEEeeCcEEEEEEEcCccc-------c-------ceeccccc-----------------CcccCC---CCceeeEEEEc
Confidence 47899999999999877653 3 46665543 445655 56777889999
Q ss_pred CCceeeEEeccChhhH-hcccEEEE
Q 013385 391 DNPGAWAFHCHIEPHF-HIGMGVVL 414 (444)
Q Consensus 391 dnpG~w~~HCHi~~H~-~~GM~~~~ 414 (444)
+.||.+.-.|+-.-=. ...|-..+
T Consensus 221 ~~~G~y~g~CsE~CG~~Hs~Mpi~v 245 (262)
T MTH00027 221 KRPGIFYGQCSEICGANHSFMPIVV 245 (262)
T ss_pred CCcEEEEEEcchhcCcCcCCCeEEE
Confidence 9999999999965322 24455444
No 101
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=45.40 E-value=83 Score=29.04 Aligned_cols=67 Identities=19% Similarity=0.268 Sum_probs=47.7
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|+.|++.+++.+. .| .|+|-+.| .+.|. -||....+.|.+
T Consensus 141 ~lvlP~~~~v~~~~tS~DV-------iH-------sf~vP~~~-----------------~k~da---iPG~~~~~~~~~ 186 (228)
T MTH00008 141 RAVLPMQTEIRVLVTAADV-------IH-------SWTVPSLG-----------------VKVDA---VPGRLNQIGFTI 186 (228)
T ss_pred eEEEecCCEEEEEEEeCCc-------cc-------cccccccC-----------------cceec---CCCceEEEEEEe
Confidence 4789999999999998764 34 45555443 22343 367788889999
Q ss_pred CCceeeEEeccChhhHhcccE
Q 013385 391 DNPGAWAFHCHIEPHFHIGMG 411 (444)
Q Consensus 391 dnpG~w~~HCHi~~H~~~GM~ 411 (444)
+.||.+..-|.-.-......|
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M 207 (228)
T MTH00008 187 TRPGVFYGQCSEICGANHSFM 207 (228)
T ss_pred CCCEEEEEEChhhcCcCccCc
Confidence 999999999987654433333
No 102
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=44.15 E-value=98 Score=25.20 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=35.2
Q ss_pred ceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEEE
Q 013385 96 PQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAG 174 (444)
Q Consensus 96 ~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~~ 174 (444)
|..++|++|++++|.--..+ .. |. |.+.++.. .....+.+.+|++|++-++ + +|.|...-.
T Consensus 41 P~~ltV~~GdTVtw~~~~d~--~~-------Hn--V~s~~~~~---f~s~~~~~~~G~t~s~Tf~--~--~G~Y~Y~C~ 101 (115)
T TIGR03102 41 PPAIRVDPGTTVVWEWTGEG--GG-------HN--VVSDGDGD---LDESERVSEEGTTYEHTFE--E--PGIYLYVCV 101 (115)
T ss_pred CCEEEECCCCEEEEEECCCC--CC-------EE--EEECCCCC---ccccccccCCCCEEEEEec--C--CcEEEEEcc
Confidence 45799999999986532211 11 22 22223221 2233455678999998885 2 578776544
No 103
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=43.85 E-value=1.9e+02 Score=23.98 Aligned_cols=93 Identities=20% Similarity=0.305 Sum_probs=60.3
Q ss_pred EEEccC-CCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCch--h----hcccCCC---C-CCccceEEeC
Q 013385 311 VYMLGL-NTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE--D----EKKFNLK---N-PPLKNTAVIF 379 (444)
Q Consensus 311 ~~~~~~-g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~--~----~~~~n~~---~-p~~rDTv~v~ 379 (444)
-+.++. ++.+.++|.|.+.+ |--.=||++ ||... +....- + ...-|+. + -.+..|=+|.
T Consensus 17 ~i~V~a~~k~vtv~l~h~G~l--------pk~~MgHN~-Vl~k~-~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTklig 86 (125)
T TIGR02695 17 SISVPKSCKEFTVNLKHTGKL--------PKAVMGHNW-VLAKS-ADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIG 86 (125)
T ss_pred EEEEcCCCcEEEEEEecCCcC--------chhccCccE-EEecc-ccHHHHHHHHHhcccccCccCCCCcceEEEccccC
Confidence 377887 58999999998755 322346665 44432 222211 0 0111221 1 2466788889
Q ss_pred CCcEEEEEEEcC--Ccee-eEEeccChhhHhcccEEEE
Q 013385 380 PYGWTALRFVAD--NPGA-WAFHCHIEPHFHIGMGVVL 414 (444)
Q Consensus 380 ~~g~v~irf~ad--npG~-w~~HCHi~~H~~~GM~~~~ 414 (444)
+|+...|-|.+. .+|. |.|=|-.--|.. .|-..|
T Consensus 87 gGes~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l 123 (125)
T TIGR02695 87 GGEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTV 123 (125)
T ss_pred CCceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEE
Confidence 999999999986 4785 999999999986 465554
No 104
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=43.83 E-value=97 Score=25.79 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=40.0
Q ss_pred CceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEEE
Q 013385 95 APQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAG 174 (444)
Q Consensus 95 ~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~~ 174 (444)
.|..+++++|+++|| +|.... +|+ |.+.++. .|-..+.+.-.+++.|.+-|+. +|.|...-.
T Consensus 52 ~PA~v~v~pGDTVtw--~~~d~~--------~Hn--v~~~~~~--~~~g~~~~~~~~~~s~~~Tfe~----~G~Y~Y~C~ 113 (128)
T COG3794 52 EPAEVTVKPGDTVTW--VNTDSV--------GHN--VTAVGGM--DPEGSGTLKAGINESFTHTFET----PGEYTYYCT 113 (128)
T ss_pred cCcEEEECCCCEEEE--EECCCC--------Cce--EEEeCCC--CcccccccccCCCcceEEEecc----cceEEEEec
Confidence 345799999998876 565542 333 3333333 4444666777778998887775 477776544
Q ss_pred e
Q 013385 175 V 175 (444)
Q Consensus 175 ~ 175 (444)
.
T Consensus 114 P 114 (128)
T COG3794 114 P 114 (128)
T ss_pred c
Confidence 3
No 105
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=38.92 E-value=98 Score=30.88 Aligned_cols=65 Identities=23% Similarity=0.321 Sum_probs=42.7
Q ss_pred CCCceEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEE
Q 013385 93 QCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWIS 172 (444)
Q Consensus 93 ~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~ 172 (444)
.|.+..++|++|+ .+|.+.|.+.... ++.++ +|+.|.- ..=.|+||.+..+.+.+. +|+|.+.
T Consensus 40 ~c~p~~~tVpAG~-~~f~V~N~~~~~~--------Efe~~--~~~~vv~---e~EnIaPG~s~~l~~~L~---pGtY~~~ 102 (375)
T PRK10378 40 QCEPMTLTVNAGK-TQFIIQNHSQKAL--------EWEIL--KGVMVVE---ERENIAPGFSQKMTANLQ---PGEYDMT 102 (375)
T ss_pred ccccCceeeCCCC-EEEEEEeCCCCcc--------eEEee--ccccccc---cccccCCCCceEEEEecC---CceEEee
Confidence 4556789999995 9999999986542 33333 2322100 112788998888877773 6899886
Q ss_pred EE
Q 013385 173 AG 174 (444)
Q Consensus 173 ~~ 174 (444)
-.
T Consensus 103 C~ 104 (375)
T PRK10378 103 CG 104 (375)
T ss_pred cC
Confidence 53
No 106
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=38.16 E-value=1e+02 Score=25.08 Aligned_cols=19 Identities=16% Similarity=0.322 Sum_probs=16.1
Q ss_pred ceEEEEcCCCeEEEEEEec
Q 013385 96 PQILHVQPNKTYRLRIAST 114 (444)
Q Consensus 96 ~~~~~v~~g~~~RlRliNa 114 (444)
|..++|++|++++|...+.
T Consensus 14 P~~v~V~~GdTV~f~n~d~ 32 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK 32 (116)
T ss_pred CCEEEECCCCEEEEEECCC
Confidence 4579999999999988775
No 107
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=38.13 E-value=1.2e+02 Score=24.99 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=40.7
Q ss_pred CCCe-EEEEEEecCcceeEEEEEcCcc-eEEEEeCCcccee------eEeeeEEecCCceEEEEEecCC
Q 013385 103 PNKT-YRLRIASTTALASLNLAVKNHK-MVVVEADGNYVQP------FEVDDMDIYSGESYSVLLTTNQ 163 (444)
Q Consensus 103 ~g~~-~RlRliNa~~~~~~~~~i~~h~-~~via~DG~~v~p------~~v~~~~i~~GeR~dV~v~~~~ 163 (444)
.|.+ ++|.|-|.|.... .+.|.+ +..+..||..+.. -....+.|.||++..+.|....
T Consensus 17 ~g~~~~~l~~tN~s~~~C---~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 17 AGQRHATLTFTNTSDTPC---TLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred CCccEEEEEEEECCCCcE---EeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 3444 5899999998866 555553 5566788885421 1345689999999888888765
No 108
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=36.70 E-value=1.2e+02 Score=27.24 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=39.6
Q ss_pred eEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEEEe
Q 013385 97 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 175 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~~~ 175 (444)
..+.++.|+.+||++-+.... +.|.+.+... .+..-||..-.+-+++++ +|.|..+...
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV~--Hsf~ip~~~~----------------k~da~PG~~~~~~~~~~~--~G~y~~~c~e 175 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDVI--HSFWVPELGG----------------KIDAIPGQYNALWFNADE--PGVYYGYCAE 175 (201)
T ss_pred CEEEEEcCCEEEEEEEeCchh--hcccccccCc----------------eEEecCCcEEEEEEEeCC--CEEEEEEehh
Confidence 368899999999998875543 2333333221 233457888888888876 7899886653
No 109
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.76 E-value=1.1e+02 Score=28.22 Aligned_cols=62 Identities=15% Similarity=0.296 Sum_probs=45.9
Q ss_pred EEEccCCCEEEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEc
Q 013385 311 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 390 (444)
Q Consensus 311 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~a 390 (444)
.+.++.|+.+++.+...+.. | .|+|-+-| .+.|.+ ||....+.|.+
T Consensus 141 ~l~lP~~~~v~~~~tS~DVi-------H-------sf~vP~lg-----------------~k~da~---PG~~n~~~~~~ 186 (228)
T MTH00076 141 RMVVPMESPIRMLITAEDVL-------H-------SWAVPSLG-----------------IKTDAI---PGRLNQTSFIA 186 (228)
T ss_pred eEEEecCCEEEEEEEecccc-------c-------cccccccC-----------------ceEEcc---CCcceeEEEEe
Confidence 48899999999999887643 3 46665543 334443 67777889999
Q ss_pred CCceeeEEeccChhhH
Q 013385 391 DNPGAWAFHCHIEPHF 406 (444)
Q Consensus 391 dnpG~w~~HCHi~~H~ 406 (444)
+.||.+..-|.-.-..
T Consensus 187 ~~~G~~~g~C~e~CG~ 202 (228)
T MTH00076 187 SRPGVYYGQCSEICGA 202 (228)
T ss_pred CCcEEEEEEChhhcCc
Confidence 9999999999875443
No 110
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=31.26 E-value=2.2e+02 Score=26.29 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=29.5
Q ss_pred EEEEcCCCeEEEEEEecCccee--EEEEEcCcceEEEEeCCccce
Q 013385 98 ILHVQPNKTYRLRIASTTALAS--LNLAVKNHKMVVVEADGNYVQ 140 (444)
Q Consensus 98 ~~~v~~g~~~RlRliNa~~~~~--~~~~i~~h~~~via~DG~~v~ 140 (444)
.+.+++| +|.||+|.-+-... ...-| +--++++|.|+.+.+
T Consensus 95 PLyl~aG-tY~F~~iSPAka~~~dgk~~I-~NGeYl~aTd~rytq 137 (310)
T PF15415_consen 95 PLYLNAG-TYYFRMISPAKASNSDGKMNI-DNGEYLYATDNRYTQ 137 (310)
T ss_pred ceEEecc-eEEEEEeccccccccCceEEe-CCceEEEEcCCceeE
Confidence 4678886 79999998774432 22333 446899999999975
No 111
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=30.09 E-value=7.9 Score=40.38 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=31.2
Q ss_pred CCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcCCceeeEEeccChhhHhcccE
Q 013385 337 IHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMG 411 (444)
Q Consensus 337 ~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~adnpG~w~~HCHi~~H~~~GM~ 411 (444)
+||+|+|+++. +. .|+|.. -++|+.+..+-.+.-++ .-+..+|+..|...|..
T Consensus 224 ph~iH~h~nnl---g~-pgn~~~------------t~~t~~~~~~~~~~~~~------~~~h~tH~qfhsyg~~~ 276 (541)
T cd01304 224 PHSIHVHCNNL---GV-PGNYET------------TLETMKAAEGVKPDPRR------QVLHLTHVQFHSYGGTS 276 (541)
T ss_pred ceEEEEccccC---CC-CCcHHH------------HHHHHHHhhcCCCcccc------ceeEeeeeeEEeeccCC
Confidence 89999999975 32 455542 24554443322111111 34667888888877774
No 112
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=29.84 E-value=78 Score=21.24 Aligned_cols=41 Identities=15% Similarity=0.116 Sum_probs=29.6
Q ss_pred CCCCccceEE-eCCCcEEEEEEEcCCceeeEEeccChhhHhc
Q 013385 368 KNPPLKNTAV-IFPYGWTALRFVADNPGAWAFHCHIEPHFHI 408 (444)
Q Consensus 368 ~~p~~rDTv~-v~~~g~v~irf~adnpG~w~~HCHi~~H~~~ 408 (444)
..|..+-+.. .+.|..+.++++-.....+=+||...-|.+.
T Consensus 4 ~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 4 SKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 3344444333 3457888889998889999999999999753
No 113
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=29.82 E-value=92 Score=26.09 Aligned_cols=42 Identities=19% Similarity=0.402 Sum_probs=25.1
Q ss_pred EEEEcCCCeE--EEEEEecCcceeEEEEEcCcceEEEEeCCccceeeE
Q 013385 98 ILHVQPNKTY--RLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFE 143 (444)
Q Consensus 98 ~~~v~~g~~~--RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~ 143 (444)
+|.++.|-+| +.+|+|+.+- . .-+...+.|-.+||.-+.|..
T Consensus 76 ~~~~~~gG~y~~~VeLCN~~GC-S---~S~~~~V~VaDTDGsHl~pL~ 119 (133)
T PF08329_consen 76 TFTVTKGGRYQMQVELCNADGC-S---TSAPVEVVVADTDGSHLAPLP 119 (133)
T ss_dssp EEEE-S-EEEEEEEEEEETTEE-E---E---EEEEEE-TTSTTS----
T ss_pred EEEecCCCEEEEEEEEECCCCc-c---cCCCEEEEEeCCCcccccccc
Confidence 7888888776 7889999972 2 123566778899999998854
No 114
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=27.65 E-value=1.7e+02 Score=23.29 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=31.8
Q ss_pred EEEEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEEEec
Q 013385 130 VVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVR 176 (444)
Q Consensus 130 ~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~~~~ 176 (444)
..+..|.+-..++..+.+...--.|..++|-++- +.|.|+|.+...
T Consensus 41 ~l~~~~~g~~~~v~~~~i~~N~ps~l~~~lPa~L-~~G~Y~l~V~Tq 86 (102)
T PF14734_consen 41 FLVSDDEGTETKVPCSSIVRNKPSRLIFILPADL-AAGEYTLEVRTQ 86 (102)
T ss_pred EEEcCCCCceEEecHHHeEeCCCcEEEEECcCcc-CceEEEEEEEEE
Confidence 3333333333456666788888889888888865 578999988764
No 115
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=27.29 E-value=66 Score=27.33 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=19.1
Q ss_pred eCCCcEEEEEEE-cCCc---eeeEEeccC
Q 013385 378 IFPYGWTALRFV-ADNP---GAWAFHCHI 402 (444)
Q Consensus 378 v~~~g~v~irf~-adnp---G~w~~HCHi 402 (444)
|+||..+.|.++ ..|| |.|+|+|-.
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 467899999985 3465 999999854
No 116
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=26.80 E-value=2.2e+02 Score=29.08 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=31.9
Q ss_pred eEEEEEEecCcc-eeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEecC
Q 013385 106 TYRLRIASTTAL-ASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTN 162 (444)
Q Consensus 106 ~~RlRliNa~~~-~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~ 162 (444)
.|+++|.|.+.. ..+.|+++|.+ |.-++- ..+.+.|.+||+.++-|...
T Consensus 349 ~Y~~~i~Nk~~~~~~~~l~v~g~~-------~~~~~~-~~~~i~v~~g~~~~~~v~v~ 398 (434)
T TIGR02745 349 TYTLKILNKTEQPHEYYLSVLGLP-------GIKIEG-PGAPIHVKAGEKVKLPVFLR 398 (434)
T ss_pred EEEEEEEECCCCCEEEEEEEecCC-------CcEEEc-CCceEEECCCCEEEEEEEEE
Confidence 489999998865 56788877743 211110 01278999999986666554
No 117
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=26.19 E-value=1.7e+02 Score=26.97 Aligned_cols=21 Identities=19% Similarity=0.518 Sum_probs=17.7
Q ss_pred CceEEEEcCCCeEEEEEEecC
Q 013385 95 APQILHVQPNKTYRLRIASTT 115 (444)
Q Consensus 95 ~~~~~~v~~g~~~RlRliNa~ 115 (444)
.|+.+++++|++..+|++..+
T Consensus 74 tPPl~rl~pg~~q~vRii~~~ 94 (230)
T PRK09918 74 TPPVARVEPGQSQQVRFILKS 94 (230)
T ss_pred cCCeEEECCCCceEEEEEECC
Confidence 356899999999999999765
No 118
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=25.15 E-value=1.1e+02 Score=28.75 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=18.2
Q ss_pred CceEEEEcCCCeEEEEEEecC
Q 013385 95 APQILHVQPNKTYRLRIASTT 115 (444)
Q Consensus 95 ~~~~~~v~~g~~~RlRliNa~ 115 (444)
.|+.+++++|++..+||+..+
T Consensus 84 tPPlfrl~p~~~q~lRI~~~~ 104 (253)
T PRK15249 84 TPPVFRIQPKAGQVVRVIYNN 104 (253)
T ss_pred cCCeEEecCCCceEEEEEEcC
Confidence 356899999999999999875
No 119
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=24.72 E-value=1.1e+02 Score=28.69 Aligned_cols=22 Identities=14% Similarity=0.480 Sum_probs=18.8
Q ss_pred CceEEEEcCCCeEEEEEEecCc
Q 013385 95 APQILHVQPNKTYRLRIASTTA 116 (444)
Q Consensus 95 ~~~~~~v~~g~~~RlRliNa~~ 116 (444)
.|+.+++++|++..|||+..+.
T Consensus 80 tPPl~rl~p~~~q~lRIi~~~~ 101 (246)
T PRK09926 80 TPPVSRIDPKRGQTIKLMYTAS 101 (246)
T ss_pred cCCeEEECCCCccEEEEEeCCC
Confidence 3568999999999999998775
No 120
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=24.41 E-value=2.2e+02 Score=23.67 Aligned_cols=49 Identities=14% Similarity=0.304 Sum_probs=30.0
Q ss_pred eEEEEEEecCcceeEEEEEcCcceEEEEeCCccce---e-eEeeeEEecCCceEEE
Q 013385 106 TYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQ---P-FEVDDMDIYSGESYSV 157 (444)
Q Consensus 106 ~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~---p-~~v~~~~i~~GeR~dV 157 (444)
.|+.||-|-+.. .+.+-+....|...||..-+ + +--..=.|.|||.|..
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 378999998754 35666666666666665321 1 1113347888887754
No 121
>KOG4078 consensus Putative mitochondrial ribosomal protein mRpS35 [Translation, ribosomal structure and biogenesis]
Probab=23.73 E-value=48 Score=27.70 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=26.7
Q ss_pred EcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccc
Q 013385 101 VQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV 139 (444)
Q Consensus 101 v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v 139 (444)
.+.|.++||||+.---.. +|-=..|.++|.++|.+.+
T Consensus 120 Y~~GaRVrlRl~DlELs~--rFLGs~~D~T~LEAdavLl 156 (173)
T KOG4078|consen 120 YQKGARVRLRLIDLELSE--RFLGSKHDLTLLEADAVLL 156 (173)
T ss_pred hhcCceEEEEEcChhHhh--hhhcCCccceEEecceeee
Confidence 457999999999754222 2223468899999999876
No 122
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=23.60 E-value=1.3e+02 Score=27.66 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=18.8
Q ss_pred CceEEEEcCCCeEEEEEEecCc
Q 013385 95 APQILHVQPNKTYRLRIASTTA 116 (444)
Q Consensus 95 ~~~~~~v~~g~~~RlRliNa~~ 116 (444)
.|+.+++++|++..+|++..+.
T Consensus 76 tPPlfrl~p~~~q~lRIi~~~~ 97 (229)
T PRK15195 76 TPPLFVSEPKSENTLRIIYAGP 97 (229)
T ss_pred cCCeEEECCCCceEEEEEECCC
Confidence 3568999999999999998764
No 123
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=23.44 E-value=1.2e+02 Score=27.90 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=18.7
Q ss_pred CceEEEEcCCCeEEEEEEecCc
Q 013385 95 APQILHVQPNKTYRLRIASTTA 116 (444)
Q Consensus 95 ~~~~~~v~~g~~~RlRliNa~~ 116 (444)
.|+.+++++|++..+|++..+.
T Consensus 75 tPPl~rl~p~~~q~lRI~~~~~ 96 (227)
T PRK15299 75 TPPLFRLNGGQKNVLRIIRTGG 96 (227)
T ss_pred cCCeEEECCCCccEEEEEECCC
Confidence 3568999999999999998864
No 124
>cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In S. cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=22.95 E-value=98 Score=23.93 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=27.1
Q ss_pred EcCCCeEEEEEEecCcceeEEEEEcCcceEEE
Q 013385 101 VQPNKTYRLRIASTTALASLNLAVKNHKMVVV 132 (444)
Q Consensus 101 v~~g~~~RlRliNa~~~~~~~~~i~~h~~~vi 132 (444)
+++|+-+|-|+++-+....+.+++.+-.+-||
T Consensus 61 f~~GDiV~AkVis~~~~~~~~Lst~~~~lGVv 92 (92)
T cd05791 61 FRPGDIVRAKVISLGDASSYYLSTAENELGVV 92 (92)
T ss_pred cCCCCEEEEEEEEcCCCCCcEEEecCCCCccC
Confidence 68999999999999987788999988776553
No 125
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=22.69 E-value=2e+02 Score=23.45 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=38.9
Q ss_pred EEEEEEeCCcCCCCCCCCCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcCCce
Q 013385 320 VDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPG 394 (444)
Q Consensus 320 v~~vl~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~adnpG 394 (444)
-.-++.|.. .-|+|+|=+.||-=++|-. .|....+| ++.+++++.+.|--...|++
T Consensus 58 ~~s~l~N~~--------q~pv~v~YrfYWYD~~Gle---------~~~~es~~--si~l~~~e~vsi~~~~~~~~ 113 (123)
T COG5633 58 ASSVLKNKR--------QEPVTVHYRFYWYDAQGLE---------QNPLESPR--SITLPGHEAVSIYLSKNTLE 113 (123)
T ss_pred eeEEEeccc--------cCceEEEEEEEEEcCCCce---------eccccCCc--ceEecCCceEEEEcccCCCC
Confidence 344566755 4599999998887665421 12223344 99999999999988887765
No 126
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=21.77 E-value=1.9e+02 Score=22.01 Aligned_cols=40 Identities=15% Similarity=0.404 Sum_probs=24.5
Q ss_pred EEcCCCeEEEEEEecCcceeEEEEEcCcceEEE-EeCCccc
Q 013385 100 HVQPNKTYRLRIASTTALASLNLAVKNHKMVVV-EADGNYV 139 (444)
Q Consensus 100 ~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~vi-a~DG~~v 139 (444)
.++||++.+|.+=..+-...+++..+..+..++ ..||.+.
T Consensus 42 ~L~pGq~l~f~~d~~g~L~~L~~~~~~~~~~~~R~~DG~f~ 82 (85)
T PF04225_consen 42 RLKPGQTLEFQLDEDGQLTALRYERSPKTTLYTRQSDGSFS 82 (85)
T ss_dssp G--TT-EEEEEE-TTS-EEEEEEEEETTEEEEEE-TTS-EE
T ss_pred hCCCCCEEEEEECCCCCEEEEEEEcCCcEEEEEEeCCCCEE
Confidence 478999999998877777888888877644433 4688764
No 127
>PF12945 YcgR_2: Flagellar protein YcgR; PDB: 2RDE_B 1YLN_A 3KYG_A.
Probab=20.94 E-value=1.5e+02 Score=22.01 Aligned_cols=37 Identities=11% Similarity=0.193 Sum_probs=23.8
Q ss_pred eEEeCCCcEEEEEEEcCCceeeEEeccChhhHhcccEE
Q 013385 375 TAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGV 412 (444)
Q Consensus 375 Tv~v~~~g~v~irf~adnpG~w~~HCHi~~H~~~GM~~ 412 (444)
.+.+..|..+.|||..++- .+.|.|.+......-.-+
T Consensus 45 ~~~l~~g~~v~v~~~~~~~-~y~F~s~V~~~~~~p~~l 81 (87)
T PF12945_consen 45 PIPLREGEEVIVRFISEDG-VYAFKSKVIGRISEPIPL 81 (87)
T ss_dssp HCCS-TT-EEEEEEEE-SC-EEEEEEEEEEEE-SSS-E
T ss_pred EEeecCCCEEEEEEEECCe-EEEEEEEEEEEEcCCeEE
Confidence 4455578899999988655 999999987655444333
No 128
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=20.82 E-value=4.2e+02 Score=24.77 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=40.6
Q ss_pred eEEEEcCCCeEEEEEEecCcceeEEEEEcCcceEEEEeCCccceeeEeeeEEecCCceEEEEEecCCCCCcceEEEEEe
Q 013385 97 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 175 (444)
Q Consensus 97 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~p~~v~~~~i~~GeR~dV~v~~~~~~~g~y~i~~~~ 175 (444)
..+.+..|+.++|++-.+.. .+.|.|.+-..++ ..-||...+..+++++ +|.|..+...
T Consensus 137 n~l~lPv~~~V~f~ltS~DV--iHsF~IP~l~~k~----------------d~iPG~~~~~~~~~~~--~G~Y~g~Cae 195 (247)
T COG1622 137 NELVLPVGRPVRFKLTSADV--IHSFWIPQLGGKI----------------DAIPGMTTELWLTANK--PGTYRGICAE 195 (247)
T ss_pred ceEEEeCCCeEEEEEEechh--ceeEEecCCCcee----------------eecCCceEEEEEecCC--CeEEEEEcHh
Confidence 36888889999998876543 3455555543333 2337888888899887 6899887654
No 129
>cd01272 FE65_N Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor protein-binding. It contains an N-terminal WW domain followed by two PTB domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=20.07 E-value=1.5e+02 Score=24.75 Aligned_cols=39 Identities=23% Similarity=0.610 Sum_probs=30.0
Q ss_pred CCceeecccceEEEeecCCCCCchhhcccCCCCCCccceEEeCCCcEEEEEEEcCCceeeEEeccCh
Q 013385 337 IHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIE 403 (444)
Q Consensus 337 ~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~v~irf~adnpG~w~~HCHi~ 403 (444)
.|-+=+|--.||.+++.+| || +.|.+.+...=+|+||.-
T Consensus 75 LhSqPI~~IRvwGvGrdng-----------------rd-----------FA~vard~~T~~~~CHVF 113 (138)
T cd01272 75 LHSQPIHTIRVWGVGRDNG-----------------RD-----------FAYVIRDERTRGSNCHVF 113 (138)
T ss_pred EEeeeeeEEEEEEecCCCC-----------------cc-----------eEEEeecCCCceeEEEEE
Confidence 6888889999999998654 23 666677777788999963
Done!