BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013386
         (444 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A6M334|GLGA_CLOB8 Glycogen synthase OS=Clostridium beijerinckii (strain ATCC 51743 /
           NCIMB 8052) GN=glgA PE=3 SV=1
          Length = 479

 Score = 33.9 bits (76), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 13/92 (14%)

Query: 243 FSPLFSEFFSDNGPIDMMDEDAISNLSVRVKLSLTVWDFI--------LPATPSLPAVIG 294
           F+P   +F   N  I+ +++ AI+   ++ +L LTV   I        L +   +  ++ 
Sbjct: 255 FNPKTDKFIKKNYSINSIEDKAINKTELQKELGLTVDKNIPMLAMVTRLTSQKGMDLLVN 314

Query: 295 ISDTVIED--RFGVRHGSDEWYEALDQHFKWL 324
           ISD ++++  +  +    D+ YE   +HFKWL
Sbjct: 315 ISDKLLQENVQLVILGTGDKHYE---EHFKWL 343


>sp|B0TX18|TRMD_FRAP2 tRNA (guanine-N(1)-)-methyltransferase OS=Francisella philomiragia
           subsp. philomiragia (strain ATCC 25017) GN=trmD PE=3
           SV=1
          Length = 255

 Score = 33.1 bits (74), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 24/107 (22%)

Query: 222 KPLHEVVERAKSTATTLRRVIFSPLFSEFFSDNGPIDMMDEDAISNLSVR---------- 271
           +PL + ++ AKST     +V++       F+ N  +++++ D++  L  R          
Sbjct: 65  EPLSQAIKDAKSTLGYNTKVVYLSPQGSVFNHNKALELLENDSLILLCGRYEGVDERLIQ 124

Query: 272 --VKLSLTVWDFILPA--TPS----------LPAVIGISDTVIEDRF 304
             V   ++V DF+L     P+          LP V+G  D++IED F
Sbjct: 125 DYVDEEISVGDFVLSGGELPAMLVMDSLIRLLPEVLGNKDSMIEDSF 171


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.135    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,874,392
Number of Sequences: 539616
Number of extensions: 7584752
Number of successful extensions: 16207
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 16205
Number of HSP's gapped (non-prelim): 6
length of query: 444
length of database: 191,569,459
effective HSP length: 121
effective length of query: 323
effective length of database: 126,275,923
effective search space: 40787123129
effective search space used: 40787123129
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)