Query 013387
Match_columns 444
No_of_seqs 222 out of 1103
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:38:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b19_A PEPA1; toxin, toxin apo 22.4 37 0.0013 22.3 1.4 14 21-34 7-20 (30)
2 1afo_A Glycophorin A; integral 20.6 58 0.002 22.7 2.2 33 84-116 6-39 (40)
3 3iyz_A Aquaporin-4; water tran 10.7 1.2E+02 0.0042 30.2 2.5 17 21-37 251-267 (340)
4 1j4n_A Aquaporin 1; membrane p 9.3 1.3E+02 0.0044 28.8 2.0 17 21-37 215-231 (271)
5 2b2h_A AMT-1, ammonium transpo 8.4 1.3E+03 0.045 23.1 9.3 104 323-444 268-372 (399)
6 2k1a_A Integrin alpha-IIB; sin 7.1 3.7E+02 0.013 18.7 3.1 14 320-333 5-18 (42)
7 2zz9_A Aquaporin-4; water tran 6.9 1.6E+02 0.0056 28.7 1.6 18 21-38 212-229 (301)
8 2b6o_A Aquaporin-0, lens fiber 6.7 1.6E+02 0.0056 27.9 1.4 18 21-38 205-222 (263)
9 2knc_A Integrin alpha-IIB; tra 6.7 3E+02 0.01 20.3 2.5 15 319-333 6-20 (54)
10 2ls4_A High affinity copper up 8.5 1.2E+02 0.004 19.2 0.0 20 326-345 4-23 (26)
No 1
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=22.36 E-value=37 Score=22.32 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=11.3
Q ss_pred ehhhhhHHHHHHHH
Q 013387 21 TVAPLFACMCACFL 34 (444)
Q Consensus 21 ~ISPllsG~~s~~l 34 (444)
+++|++||++=+++
T Consensus 7 iia~visGcivalF 20 (30)
T 4b19_A 7 IIAPVISGCAIAFF 20 (30)
T ss_dssp STTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 57899999987665
No 2
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=20.62 E-value=58 Score=22.66 Aligned_cols=33 Identities=9% Similarity=0.120 Sum_probs=23.1
Q ss_pred chhhhhHHHHHHHHHH-HHHhhheechhhhhhcc
Q 013387 84 RWVTIAAVALATFIGA-VLPLVVIVPLATKELGA 116 (444)
Q Consensus 84 ~~~~~~~~~is~~vg~-~l~~~~~vP~l~rri~~ 116 (444)
+.+.....++.+++-+ ++..++++.|.-||+.|
T Consensus 6 ~fs~p~i~lII~~vmaGiIG~IllI~y~I~rl~K 39 (40)
T 1afo_A 6 HFSEPEITLIIFGVMAGVIGTILLISYGIRRLIK 39 (40)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555577788888877 66666668887777754
No 3
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=10.72 E-value=1.2e+02 Score=30.21 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=15.1
Q ss_pred ehhhhhHHHHHHHHHHH
Q 013387 21 TVAPLFACMCACFLFIL 37 (444)
Q Consensus 21 ~ISPllsG~~s~~lF~~ 37 (444)
.+.|+++|++++++|-+
T Consensus 251 wvgPiiGailaallY~~ 267 (340)
T 3iyz_A 251 WVGPIIGAVLAGALYEY 267 (340)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 48999999999999865
No 4
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=9.33 E-value=1.3e+02 Score=28.81 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=15.0
Q ss_pred ehhhhhHHHHHHHHHHH
Q 013387 21 TVAPLFACMCACFLFIL 37 (444)
Q Consensus 21 ~ISPllsG~~s~~lF~~ 37 (444)
.+.|+++|++++++|-+
T Consensus 215 ~vgP~~Ga~la~~~y~~ 231 (271)
T 1j4n_A 215 WVGPFIGAALAVLIYDF 231 (271)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 58999999999999964
No 5
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=8.41 E-value=1.3e+03 Score=23.08 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHHHHHhhccchhHhhhccc-cccccCchhHHHhHHHHHHHHHHHhcCCCccccchhhhceeeeeeeCC
Q 013387 323 VSWWFRALGGLGAVMGFILCGWKLTQCLGGK-LTYMSNSRGLASQLSTVAAVIIVSTTNLPVSTVHAFVGSLVGVGIADD 401 (444)
Q Consensus 323 ~p~wil~~g~~~i~~G~~~~G~rVi~TvG~~-it~l~p~~gf~ael~aa~~v~~as~~GlPVSTTh~ivGavvGvG~~~~ 401 (444)
.|+..+++|.++=.+-.+ +.++.+-++-+ -.+.-|.+|++--.++-.+-++++. ...|. -|+..+
T Consensus 268 ~p~~A~iiG~iag~i~~~--~~~l~~kl~iDD~l~a~~vHgv~Gi~G~l~~glfa~~---------~~~g~---~Gl~~g 333 (399)
T 2b2h_A 268 DVKGAIVIGLVAGIVCYL--AMDFRIKKKIDESLDAWAIHGIGGLWGSVAVGILANP---------EVNGY---AGLLFG 333 (399)
T ss_dssp CHHHHHHHHHHHHHHHHH--HHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHCCH---------HHHSC---CCGGGT
T ss_pred CHHHHHHHHHHHHHHHHH--HHHHHHHcCCCCCCCceeccchhhHHHHHHHHHHccc---------cccCC---CccccC
Confidence 366677766654333222 22444433311 1234466677777766666655531 01110 133332
Q ss_pred CcccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCCCCCC
Q 013387 402 IQNVNWKLLFKFICGWVMTIIFCCGAAFAIFYASVHAPAYAVP 444 (444)
Q Consensus 402 ~~~Vnw~~~~~I~~~Wi~T~p~a~~is~~l~~~~~~aP~~~~~ 444 (444)
+|+.+..-+.+.+++...+.+.+++++.++.+.+.++++
T Consensus 334 ----~~~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~~glRv~ 372 (399)
T 2b2h_A 334 ----NPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAVGLRVS 372 (399)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBCC
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 488888889999999999999999999999887777653
No 6
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=7.11 E-value=3.7e+02 Score=18.69 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=9.5
Q ss_pred ccchhHHHHHHHHH
Q 013387 320 SIDVSWWFRALGGL 333 (444)
Q Consensus 320 ~~~~p~wil~~g~~ 333 (444)
...+|+|+.+.+.+
T Consensus 5 ~~~vp~wiIi~s~l 18 (42)
T 2k1a_A 5 ERAIPIWWVLVGVL 18 (42)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred cCCcchHHHHHHHH
Confidence 34689997766554
No 7
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=6.93 E-value=1.6e+02 Score=28.67 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.6
Q ss_pred ehhhhhHHHHHHHHHHHH
Q 013387 21 TVAPLFACMCACFLFILL 38 (444)
Q Consensus 21 ~ISPllsG~~s~~lF~~i 38 (444)
.+.|+++|++++++|-++
T Consensus 212 ~vgPiiGailaa~ly~~l 229 (301)
T 2zz9_A 212 WVGPIIGAVLAGALYEYV 229 (301)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred eeHHHHHHHHHHHHHHHH
Confidence 589999999999999654
No 8
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=6.73 E-value=1.6e+02 Score=27.93 Aligned_cols=18 Identities=22% Similarity=0.384 Sum_probs=15.3
Q ss_pred ehhhhhHHHHHHHHHHHH
Q 013387 21 TVAPLFACMCACFLFILL 38 (444)
Q Consensus 21 ~ISPllsG~~s~~lF~~i 38 (444)
.+.|+++|++++++|..+
T Consensus 205 ~vgP~~Ga~la~~~y~~l 222 (263)
T 2b6o_A 205 WVGPVIGAGLGSLLYDFL 222 (263)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 589999999999998653
No 9
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=6.67 E-value=3e+02 Score=20.27 Aligned_cols=15 Identities=20% Similarity=0.570 Sum_probs=9.9
Q ss_pred CccchhHHHHHHHHH
Q 013387 319 DSIDVSWWFRALGGL 333 (444)
Q Consensus 319 ~~~~~p~wil~~g~~ 333 (444)
....+|+|+++.+.+
T Consensus 6 ~~~~vp~wiIi~svl 20 (54)
T 2knc_A 6 EERAIPIWWVLVGVL 20 (54)
T ss_dssp TTTTCCHHHHHHHHH
T ss_pred cCCCcchHHHHHHHH
Confidence 344689997765554
No 10
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=8.45 E-value=1.2e+02 Score=19.22 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhccch
Q 013387 326 WFRALGGLGAVMGFILCGWK 345 (444)
Q Consensus 326 wil~~g~~~i~~G~~~~G~r 345 (444)
|+++...++.++|-+++||+
T Consensus 4 ~l~iavvlGa~~Gyf~F~~~ 23 (26)
T 2ls4_A 4 YLCIAVAAGAGTGYFLFSWK 23 (26)
Confidence 67777778888888888876
Done!