Query 013387
Match_columns 444
No_of_seqs 222 out of 1103
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 09:38:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013387.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013387hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 16.4 60 0.0044 24.3 3.9 55 19-73 33-95 (100)
2 d1u7ga_ f.44.1.1 (A:) Ammonium 15.9 2.1E+02 0.015 26.4 8.5 103 324-443 279-383 (383)
3 d3ehbb2 f.17.2.1 (B:1-107) Bac 13.5 71 0.0052 24.3 3.6 56 19-74 39-102 (107)
4 d1q90l_ f.23.24.1 (L:) PetL su 9.2 51 0.0037 19.9 0.9 22 327-348 9-30 (32)
5 d2axtj1 f.23.32.1 (J:7-40) Pho 6.5 1.3E+02 0.0094 18.5 2.0 22 323-344 2-26 (34)
6 d1rh5b_ f.23.28.1 (B:) Preprot 6.1 3.9E+02 0.029 18.0 4.7 36 404-439 17-52 (56)
7 d1mkma1 a.4.5.33 (A:1-75) Tran 5.5 49 0.0036 23.4 -0.6 27 374-400 25-51 (75)
8 d1jb0i_ f.23.17.1 (I:) Subunit 4.0 3.1E+02 0.023 17.0 2.6 21 414-434 9-29 (38)
9 d1u7ga_ f.44.1.1 (A:) Ammonium 3.6 1.1E+03 0.08 20.9 7.7 73 24-114 232-304 (383)
10 d2h8pc1 f.14.1.1 (C:22-78) Pot 3.3 6.5E+02 0.047 16.6 4.2 33 404-439 2-34 (57)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=16.42 E-value=60 Score=24.27 Aligned_cols=55 Identities=13% Similarity=0.188 Sum_probs=36.1
Q ss_pred eeehhhhhHHHHHHHHHHHHHhhhhcc--------CCHHHHHHHHhhHHHHHHhhhhhhheee
Q 013387 19 EWTVAPLFACMCACFLFILLKVLILRH--------KNARERILIFFPVDYGLSAGLLCLFLVY 73 (444)
Q Consensus 19 SW~ISPllsG~~s~~lF~~ir~~VLrr--------~np~~~al~~lPi~~~~t~~i~~~~Iv~ 73 (444)
-|++..++......++|.+.||.--+. .+.++-..-.+|.+..+.+++-.+-++|
T Consensus 33 ~~i~~~I~~~V~~~l~~~~~~~r~~~~~~~~~~~~n~~LEiiWTviP~lILi~l~~pS~~~ly 95 (100)
T d3dtub2 33 LVIIAAITIFVTLLILYAVWRFHEKRNKVPARFTHNSPLEIAWTIVPIVILVAIGAFSLPVLF 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTTTCCSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666677777777663321 1247788888898888888777665554
No 2
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=15.90 E-value=2.1e+02 Score=26.39 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHHHhhccchhHh-hhc-cccccccCchhHHHhHHHHHHHHHHHhcCCCccccchhhhceeeeeeeCC
Q 013387 324 SWWFRALGGLGAVMGFILCGWKLTQ-CLG-GKLTYMSNSRGLASQLSTVAAVIIVSTTNLPVSTVHAFVGSLVGVGIADD 401 (444)
Q Consensus 324 p~wil~~g~~~i~~G~~~~G~rVi~-TvG-~~it~l~p~~gf~ael~aa~~v~~as~~GlPVSTTh~ivGavvGvG~~~~ 401 (444)
|+..+++|.++- ....++.+.++ -++ .|-...-|.+|++--++.-++-+.++ | ++-|.+...
T Consensus 279 p~~A~~iG~i~g--~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glfa~----~---------~~~g~~~~~- 342 (383)
T d1u7ga_ 279 VGGALIIGVVAG--LAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAA----S---------SLGGVGFAE- 342 (383)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTS----G---------GGTCCCCCT-
T ss_pred hhhHHHHHhhcc--HHHHHHHHHHHhhcccccccceEeehhhhHHHHHHHHHHhcC----c---------ccccccccc-
Confidence 666677665432 23345666664 233 22223445555555555444444432 1 112222222
Q ss_pred CcccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCCCCC
Q 013387 402 IQNVNWKLLFKFICGWVMTIIFCCGAAFAIFYASVHAPAYAV 443 (444)
Q Consensus 402 ~~~Vnw~~~~~I~~~Wi~T~p~a~~is~~l~~~~~~aP~~~~ 443 (444)
....|+.+..-+.+++++...+++.+++++.++...|.++|
T Consensus 343 -~~~~~~ql~~Ql~g~~v~~~~~~~~~~ii~~il~~~~gLRV 383 (383)
T d1u7ga_ 343 -GVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 383 (383)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBC
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcC
Confidence 34468889999999999999999999999999988776653
No 3
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=13.53 E-value=71 Score=24.25 Aligned_cols=56 Identities=18% Similarity=0.334 Sum_probs=35.5
Q ss_pred eeehhhhhHHHHHHHHHHHHHhhhhc--------cCCHHHHHHHHhhHHHHHHhhhhhhheeee
Q 013387 19 EWTVAPLFACMCACFLFILLKVLILR--------HKNARERILIFFPVDYGLSAGLLCLFLVYR 74 (444)
Q Consensus 19 SW~ISPllsG~~s~~lF~~ir~~VLr--------r~np~~~al~~lPi~~~~t~~i~~~~Iv~k 74 (444)
-|++..++...+...+|.++||.--+ ..+.+|-..-++|.+..+.+++-.+-++|+
T Consensus 39 ~~i~~~I~~~V~~~~~~~~~~~r~~~~~~~~~~~~n~~lEi~WTviP~lIL~~laipSl~~Ly~ 102 (107)
T d3ehbb2 39 LYIITAVTIFVCLLLLICIVRFNRRANPVPARFTHNTPIEVIWTLVPVLILVAIGAFSLPILFR 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSBTTTSSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666777777663211 112477777788888888887777666554
No 4
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=9.18 E-value=51 Score=19.86 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhhccchhHh
Q 013387 327 FRALGGLGAVMGFILCGWKLTQ 348 (444)
Q Consensus 327 il~~g~~~i~~G~~~~G~rVi~ 348 (444)
-+++|+++..+|..++=.+|.+
T Consensus 9 glligal~~tlgiylgllkvvk 30 (32)
T d1q90l_ 9 GLLIGALVFTLGIYLGLLKVVK 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888888888877656544
No 5
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.48 E-value=1.3e+02 Score=18.53 Aligned_cols=22 Identities=27% Similarity=0.842 Sum_probs=11.9
Q ss_pred hhHHHHH-HHHHH--HHHHHhhccc
Q 013387 323 VSWWFRA-LGGLG--AVMGFILCGW 344 (444)
Q Consensus 323 ~p~wil~-~g~~~--i~~G~~~~G~ 344 (444)
+|.|+.. ++|++ -.+|+++||-
T Consensus 2 iPLWlv~tv~G~~vi~~vG~FfYGs 26 (34)
T d2axtj1 2 IPLWIVATVAGMGVIVIVGLFFYGA 26 (34)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcEEEeeehhhhhhHhheeeeeeee
Confidence 5778443 23322 2467777774
No 6
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.08 E-value=3.9e+02 Score=18.01 Aligned_cols=36 Identities=6% Similarity=-0.112 Sum_probs=29.0
Q ss_pred ccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCC
Q 013387 404 NVNWKLLFKFICGWVMTIIFCCGAAFAIFYASVHAP 439 (444)
Q Consensus 404 ~Vnw~~~~~I~~~Wi~T~p~a~~is~~l~~~~~~aP 439 (444)
.=+|+.+.+|...=-+-+.+-|.++++++.+..+-|
T Consensus 17 KP~~~Ef~~ia~v~~iG~~i~G~IGf~I~li~~~i~ 52 (56)
T d1rh5b_ 17 KPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIK 52 (56)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 347999999998888888888899998888776543
No 7
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=5.54 E-value=49 Score=23.35 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=25.0
Q ss_pred HHHHhcCCCccccchhhhceeeeeeeC
Q 013387 374 IIVSTTNLPVSTVHAFVGSLVGVGIAD 400 (444)
Q Consensus 374 ~~as~~GlPVSTTh~ivGavvGvG~~~ 400 (444)
=+|..+|+|-||+|=++....--|+.+
T Consensus 25 eia~~~~~~~st~~rll~tL~~~g~l~ 51 (75)
T d1mkma1 25 EIAEKFNMSVSNAYKYMVVLEEKGFVL 51 (75)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 477899999999999999999999987
No 8
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=4.02 E-value=3.1e+02 Score=17.04 Aligned_cols=21 Identities=10% Similarity=0.317 Sum_probs=14.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHH
Q 013387 414 ICGWVMTIIFCCGAAFAIFYA 434 (444)
Q Consensus 414 ~~~Wi~T~p~a~~is~~l~~~ 434 (444)
++-||+-|.++-++-+.+|.+
T Consensus 9 yLPwI~iPvv~wl~p~vvMgl 29 (38)
T d1jb0i_ 9 FLPWIFIPVVCWLMPTVVMGL 29 (38)
T ss_dssp THHHHHHHHHHTHHHHHHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHH
Confidence 467888888777766655543
No 9
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=3.63 E-value=1.1e+03 Score=20.87 Aligned_cols=73 Identities=11% Similarity=-0.047 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHHHHHhhhhccCCHHHHHHHHhhHHHHHHhhhhhhheeeecCCcccccCchhhhhHHHHHHHHHHHHHh
Q 013387 24 PLFACMCACFLFILLKVLILRHKNARERILIFFPVDYGLSAGLLCLFLVYRVRGHLVHIPRWVTIAAVALATFIGAVLPL 103 (444)
Q Consensus 24 PllsG~~s~~lF~~ir~~VLrr~np~~~al~~lPi~~~~t~~i~~~~Iv~kG~~~~l~~~~~~~~~~~~is~~vg~~l~~ 103 (444)
=.+++..+.+-..++.+..-+|.|+..-.-=.+=-++.+|.+ . +...+|.++++.+..|.+.
T Consensus 232 t~~a~a~~~~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~------------~----~~v~p~~A~~iG~i~g~i~-- 293 (383)
T d1u7ga_ 232 TVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPA------------C----GYIGVGGALIIGVVAGLAG-- 293 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTT------------T----TTSCHHHHHHHHHHHHHHH--
T ss_pred HHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhhhhcccC------------c----cccchhhHHHHHhhccHHH--
Confidence 345666666666667776666666654333223333333331 1 2456677777766655522
Q ss_pred hheechhhhhh
Q 013387 104 VVIVPLATKEL 114 (444)
Q Consensus 104 ~~~vP~l~rri 114 (444)
.+...++++|.
T Consensus 294 ~~~~~~l~~~~ 304 (383)
T d1u7ga_ 294 LWGVTMLKRLL 304 (383)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 22245565554
No 10
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.25 E-value=6.5e+02 Score=16.57 Aligned_cols=33 Identities=15% Similarity=0.300 Sum_probs=20.4
Q ss_pred ccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCC
Q 013387 404 NVNWKLLFKFICGWVMTIIFCCGAAFAIFYASVHAP 439 (444)
Q Consensus 404 ~Vnw~~~~~I~~~Wi~T~p~a~~is~~l~~~~~~aP 439 (444)
+++||.+.-..+-.++.+. +.|.++|.+=..+|
T Consensus 2 a~~~R~~~~~~~~~~i~i~---~~s~~~y~~E~~~~ 34 (57)
T d2h8pc1 2 ALHWRAAGAATVLLVIVLL---AGSYLAVLAERGAP 34 (57)
T ss_dssp CHHHHHHHHHHHHHHHHHH---HHHHHHHHHHTTST
T ss_pred cHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCC
Confidence 6789887777666655554 33555566555554
Done!