Query 013388
Match_columns 444
No_of_seqs 175 out of 802
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 09:39:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2znr_A AMSH-like protease; met 100.0 3.8E-46 1.3E-50 344.1 15.0 172 266-444 7-178 (178)
2 3rzv_A STAM-binding protein; u 100.0 4.5E-45 1.6E-49 346.1 15.8 172 266-444 40-211 (211)
3 4b4t_V 26S proteasome regulato 100.0 2.8E-28 9.7E-33 241.5 14.2 136 264-402 21-165 (306)
4 2og4_A PRE-mRNA-splicing facto 99.9 2.1E-25 7.3E-30 216.0 8.7 144 266-414 36-189 (254)
5 2p8r_A PRP8, PRE-mRNA-splicing 99.9 2.5E-24 8.5E-29 210.4 9.4 141 267-414 38-191 (273)
6 2kks_A Uncharacterized protein 99.9 4.7E-23 1.6E-27 182.8 13.6 121 269-396 1-125 (146)
7 2kcq_A MOV34/MPN/PAD-1 family; 99.9 1.8E-23 6.3E-28 186.7 10.8 120 270-396 1-127 (153)
8 1oi0_A AF2198, hypothetical pr 99.8 7.1E-19 2.4E-23 152.0 10.5 109 269-395 3-112 (124)
9 2o95_A 26S proteasome non-ATPa 99.8 3.5E-18 1.2E-22 156.7 14.7 126 267-396 7-143 (187)
10 3sbg_A PRE-mRNA-splicing facto 99.7 3.2E-17 1.1E-21 171.0 9.2 136 267-409 348-489 (565)
11 4e0q_A COP9 signalosome comple 99.6 5.4E-15 1.9E-19 131.8 12.2 115 267-386 5-127 (141)
12 4b4t_U RPN8, 26S proteasome re 99.0 2.3E-09 7.9E-14 107.3 15.3 126 267-396 5-141 (338)
13 2qlc_A DNA repair protein RADC 93.5 0.53 1.8E-05 41.0 10.1 89 274-369 8-96 (126)
14 2a9u_A Ubiquitin carboxyl-term 60.3 5.2 0.00018 35.7 3.0 24 19-42 94-117 (144)
15 2xze_A STAM-binding protein; h 38.3 19 0.00064 31.9 2.9 25 17-41 90-115 (146)
16 1wmi_B RELB, hypothetical prot 28.6 17 0.00058 28.4 0.8 21 21-41 5-25 (67)
No 1
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=100.00 E-value=3.8e-46 Score=344.05 Aligned_cols=172 Identities=46% Similarity=0.850 Sum_probs=161.9
Q ss_pred CCeEEEECHHHHHHHHHHHhccCCCCcceEEEeeeeeCCCEEEEEEEEecCCCCCCCceecCChHHHHHHHhhCCCccEE
Q 013388 266 EPLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLG 345 (444)
Q Consensus 266 ~~r~V~Is~~aL~kILkHA~snt~~P~EvCGLLlG~~~~~~l~VT~lf~ppqegtsds~~a~deee~fe~q~~rgLeiVG 345 (444)
.+++|.|+++++++|++||+.++.++.|+||+|+|+..++.+.|+++|+++|.+++++|++.++++++++++++++++||
T Consensus 7 ~~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~~~~V~~v~~~pq~~t~~~~~~~~~~e~~~~~~~~~l~~vG 86 (178)
T 2znr_A 7 GLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLG 86 (178)
T ss_dssp SCCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETTEEEEEEEEECCEEEETTEEEECCHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCCCeEEEEEEeCCcCCCCCeeccCCHHHHHHHHHhCCCEEEE
Confidence 37889999999999999999976445899999999998889999999999999999999999988999999999999999
Q ss_pred EEeCCCCCCCCCCHHHHHhHHHHhhhCCCeEEEEEccCCCCCceeEEEecCCCCchhhhhcccCCCcCCCCCCCCCCCcc
Q 013388 346 WIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGFHPHDPPPDGGPIYK 425 (444)
Q Consensus 346 WYHSHP~~~afPSstDL~tQ~sYQ~~lPeaVaLIiSP~~s~~~LrAFRLtdP~Gm~~ik~C~~~gFhPh~~~~~g~~iy~ 425 (444)
||||||.++|+||.+|+++|++||+++|+++||||||..+ .++||||++ +||+++++|+++|||||. +++++|+
T Consensus 87 wyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~--~~~afrl~~-~g~~~~~~~~~~~f~p~~---~~~~~~~ 160 (178)
T 2znr_A 87 WIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK--DTGIFRLTN-AGMLEVSACKKKGFHPHT---KEPRLFS 160 (178)
T ss_dssp EEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT--EEEEEEECH-HHHHHHHHCCCCSSCCCC---CSSCSEE
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC--cceEEEEEC-CcEeeecccCCCCcccCC---CCCCceE
Confidence 9999999999999999999999999999999999999985 499999995 899999999999999997 3689999
Q ss_pred ccCceEecCCCceEEeeCC
Q 013388 426 PCTDVYMNPNLKFDVIDLR 444 (444)
Q Consensus 426 ~~~hv~~~~~~~~~~~dlr 444 (444)
+|+||++++++ |+|+|||
T Consensus 161 ~~~~~~~~~~~-~~~~~~r 178 (178)
T 2znr_A 161 ICKHVLVKDIK-IIVLDLR 178 (178)
T ss_dssp ECSSEEEECCC-CEEEECC
T ss_pred EeceEEEeCCe-eEEEecC
Confidence 99999999999 9999999
No 2
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=100.00 E-value=4.5e-45 Score=346.08 Aligned_cols=172 Identities=46% Similarity=0.848 Sum_probs=162.2
Q ss_pred CCeEEEECHHHHHHHHHHHhccCCCCcceEEEeeeeeCCCEEEEEEEEecCCCCCCCceecCChHHHHHHHhhCCCccEE
Q 013388 266 EPLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLG 345 (444)
Q Consensus 266 ~~r~V~Is~~aL~kILkHA~snt~~P~EvCGLLlG~~~~~~l~VT~lf~ppqegtsds~~a~deee~fe~q~~rgLeiVG 345 (444)
.++.|.|+++++++|+.||+.++.++.|+||+|+|+..++.++|+++++++|.+++++|++.+++++|++++.+++++||
T Consensus 40 ~lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~~~~~I~~v~~ppq~gt~~~v~~~~~~e~~~~~~~~~l~~vG 119 (211)
T 3rzv_A 40 GLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLG 119 (211)
T ss_dssp TBCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEETTEEEEEEEEECCEEECSSCEEECCHHHHHHHHHHHTCEEEE
T ss_pred ccEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCCCCEEEEEEEeCCccCCCCceeccChHHHHHHHhhCCCEEEE
Confidence 47889999999999999999987456899999999998889999999999999999999999998999999899999999
Q ss_pred EEeCCCCCCCCCCHHHHHhHHHHhhhCCCeEEEEEccCCCCCceeEEEecCCCCchhhhhcccCCCcCCCCCCCCCCCcc
Q 013388 346 WIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGFHPHDPPPDGGPIYK 425 (444)
Q Consensus 346 WYHSHP~~~afPSstDL~tQ~sYQ~~lPeaVaLIiSP~~s~~~LrAFRLtdP~Gm~~ik~C~~~gFhPh~~~~~g~~iy~ 425 (444)
||||||.++||||.+|+++|++||.+++++|+|||||... +++||||+ |+||+|+.+|+++|||||.+ ++++|+
T Consensus 120 WyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~~--~lgaFrLt-p~G~~~~~~c~~~~fhph~~---~~~~~~ 193 (211)
T 3rzv_A 120 WIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQ--ETGFFKLT-DHGLEEISSCRQKGFHPHSK---DPPLFC 193 (211)
T ss_dssp EEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTTT--EEEEEEEC-HHHHHHHHHCCCCSSCCCCC---SSCSEE
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCC--eeeEEEec-cchhhhhhccccCCcccCCC---CCCceE
Confidence 9999999999999999999999999999999999999865 69999999 58999999999999999976 489999
Q ss_pred ccCceEecCCCceEEeeCC
Q 013388 426 PCTDVYMNPNLKFDVIDLR 444 (444)
Q Consensus 426 ~~~hv~~~~~~~~~~~dlr 444 (444)
+|+||++++.+ |+|||||
T Consensus 194 ~~~hv~~~~~~-~~~~dlr 211 (211)
T 3rzv_A 194 SCSHVTVVDRA-VTITDLR 211 (211)
T ss_dssp ECSSEEEECCC-CEEEECC
T ss_pred EeeeEEEcCCE-eEEEeCC
Confidence 99999998888 9999999
No 3
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.8e-28 Score=241.50 Aligned_cols=136 Identities=23% Similarity=0.417 Sum_probs=118.1
Q ss_pred CCCCeEEEECHHHHHHHHHHHhccCCCCcceEEEeeeeeC-CCEEEEEEEEecCCCCCCCceecCChHHHHHHH-----h
Q 013388 264 RSEPLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLK-NRKFYITALIIPKQESTSDSCQATNEEEIFEVQ-----D 337 (444)
Q Consensus 264 ~~~~r~V~Is~~aL~kILkHA~snt~~P~EvCGLLlG~~~-~~~l~VT~lf~ppqegtsds~~a~deee~fe~q-----~ 337 (444)
..+...|+|+..++.+|++||++ +.+.||||+|+|... ++++.|+++|++|+.++++.+++.+++...+++ .
T Consensus 21 ~~~~~~V~is~lallkm~~Ha~~--~~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~~m~~~~~~v 98 (306)
T 4b4t_V 21 DDTKETVYISSIALLKMLKHGRA--GVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQT 98 (306)
T ss_dssp CSSCCEEEECHHHHHHHHHHTCS--CSSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeHHHHHHHHHHhcC--CCCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCCHHHHHHHHHHHHHh
Confidence 34479999999999999999999 459999999999864 568999999999999999999888875444432 2
Q ss_pred hCCCccEEEEeCCCCCCCCCCHHHHHhHHHHhhhCCCeEEEEEccCCCCC---ceeEEEecCCCCchh
Q 013388 338 KRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATR---KHGIFRLTSPGGMSV 402 (444)
Q Consensus 338 ~rgLeiVGWYHSHP~~~afPSstDL~tQ~sYQ~~lPeaVaLIiSP~~s~~---~LrAFRLtdP~Gm~~ 402 (444)
++++.+||||||||.++||||.+||++|+.||.+.+++|+||+||..+.. .++|||++++ |+..
T Consensus 99 ~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~~G~~~i~Afr~~~~-~~~~ 165 (306)
T 4b4t_V 99 GRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDT-GALI 165 (306)
T ss_dssp SCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSSSCSSCEEEEECCHH-HHHH
T ss_pred CCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCCCCceeeeEEEecCc-cccc
Confidence 68899999999999999999999999999999999999999999987754 5999999974 5443
No 4
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.1e-25 Score=216.03 Aligned_cols=144 Identities=20% Similarity=0.329 Sum_probs=128.5
Q ss_pred CCeEEEECHHHHHHHHHHHhccCCCCcceEEEeeeeeC---CCEEEEEEEEecCCCCCCCceecCChHHHHHHHhhCCCc
Q 013388 266 EPLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLK---NRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLF 342 (444)
Q Consensus 266 ~~r~V~Is~~aL~kILkHA~snt~~P~EvCGLLlG~~~---~~~l~VT~lf~ppqegtsds~~a~deee~fe~q~~rgLe 342 (444)
+.+.+.||++++.+|+..|+.+ .|+||+|.|+.. .++++|++++++||.++.++|.+.++.+.+++++..+|+
T Consensus 36 ~~~t~vlPknLlkkFi~IAD~~----Tq~cG~LyG~~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~l~dLe 111 (254)
T 2og4_A 36 EQNVYVLPKNLLKKFIEISDVK----IQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPDTEGLE 111 (254)
T ss_dssp TSCEEEEEHHHHHHHHHTSCSS----SCCEEEEEEEECSSCTTEEEEEEEECCCEEEETTEEEECCCCCCTTSTTCTTCE
T ss_pred CCcEEEcCHHHHHHHHHHhhcc----ceEEEEEEccCCCCCCCeEEEEEEEECCccCCCceEECCCcCccccchhhcCCE
Confidence 3578999999999999999985 489999999984 368999999999999999999998877777777889999
Q ss_pred cEEEEeCCCCCCCCCCHHHHHhHHHHhhhC-CCeEEEEEccCCCCCceeEEEecCCCCchhhhhcc------cCCCcCC
Q 013388 343 PLGWIHTHPTQSCFMSSIDVHTHYSYQIML-PESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQ------QRGFHPH 414 (444)
Q Consensus 343 iVGWYHSHP~~~afPSstDL~tQ~sYQ~~l-PeaVaLIiSP~~s~~~LrAFRLtdP~Gm~~ik~C~------~~gFhPh 414 (444)
.+||+||||.+.||+|+.||++|++||.++ +++|+|||+++.+..+++||+|++ +|++|+++=+ ..||+|.
T Consensus 112 ~LGWIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsftpgs~sl~af~LT~-~G~~Wg~~n~d~~~~~~~g~~~~ 189 (254)
T 2og4_A 112 LLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTPGSVSLSAYNLTD-EGYQWGEENKDIMNVLSEGFEPT 189 (254)
T ss_dssp EEEEEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEEETTEEEEEEEEECH-HHHHHHHTCCSCCSSCCTTCCGG
T ss_pred ecceEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEecCCCCceeEEEEcCh-hhhhhhhhcccccccCCCCCCcc
Confidence 999999999999999999999999999955 999999999998878899999996 7999987554 4567764
No 5
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=99.90 E-value=2.5e-24 Score=210.40 Aligned_cols=141 Identities=18% Similarity=0.322 Sum_probs=123.6
Q ss_pred CeEEEECHHHHHHHHHHHhccCCCCcceEEEeeeeeC---CCEEEEEEEEecCCCCCCCceecCChHHHHHHHhhCCCcc
Q 013388 267 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLK---NRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFP 343 (444)
Q Consensus 267 ~r~V~Is~~aL~kILkHA~snt~~P~EvCGLLlG~~~---~~~l~VT~lf~ppqegtsds~~a~deee~fe~q~~rgLei 343 (444)
.+.+.||++++.+|+..|+.+ .|+||+|.|+.. .++++|++++++||.++.++|.+.++...+++. .+|++
T Consensus 38 ~~t~vlPknllkkFi~IADlr----Tq~~G~LyG~s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~~l--~dLe~ 111 (273)
T 2p8r_A 38 GYTYILPKNILKKFITISDLR----TQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELL--RDFEP 111 (273)
T ss_dssp SCEEEEEHHHHHHHHHTSCSS----SCCEEEEEEECCTTCTTEEEEEEEECCSBEECSSCEECCSSCCCCTTT--TTSEE
T ss_pred ccEEEecHHHHHHHHHHhhcc----ceEEEEEeccCCCCCCCeEEEEEEEECCccCCCceEECCCcCcchhhh--ccccc
Confidence 578999999999999999984 599999999984 368999999999999999999987754433433 99999
Q ss_pred EEEEeCCCCCCCCCCHHHHHhHHHHhhh---C--CCeEEEEEccCCCCCceeEEEecCCCCchhhhhcc-----cCCCcC
Q 013388 344 LGWIHTHPTQSCFMSSIDVHTHYSYQIM---L--PESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQ-----QRGFHP 413 (444)
Q Consensus 344 VGWYHSHP~~~afPSstDL~tQ~sYQ~~---l--PeaVaLIiSP~~s~~~LrAFRLtdP~Gm~~ik~C~-----~~gFhP 413 (444)
+||+||||...|++|+.||++|++||.+ + +++|+|+|+++.+..+++||+|++ +|++|+++=+ ..||||
T Consensus 112 LGWIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsftpgs~sl~af~LT~-~G~~Wg~~n~d~~~~~~Gf~p 190 (273)
T 2p8r_A 112 LGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTPGSVSLTAYKLTP-SGYEWGKANTDKGNNPKGYMP 190 (273)
T ss_dssp EEEEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEEETTEEEEEEEEECH-HHHHHHHHCCCCSSCCTTCCG
T ss_pred cceEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEecCCCCceeEEEEcCh-HHhhhhhhccccccCCCCCCc
Confidence 9999999999999999999999999986 5 499999999998888899999997 7999877553 468988
Q ss_pred C
Q 013388 414 H 414 (444)
Q Consensus 414 h 414 (444)
+
T Consensus 191 ~ 191 (273)
T 2p8r_A 191 T 191 (273)
T ss_dssp G
T ss_pred c
Confidence 6
No 6
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=99.89 E-value=4.7e-23 Score=182.75 Aligned_cols=121 Identities=16% Similarity=0.249 Sum_probs=104.0
Q ss_pred EEEECHHHHHHHHHHHhccCCCCcceEEEeeeeeCCCEEEEEEEEecCCCCCCCceecCChHHHHHHH---hhCCCccEE
Q 013388 269 QLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQ---DKRSLFPLG 345 (444)
Q Consensus 269 ~V~Is~~aL~kILkHA~snt~~P~EvCGLLlG~~~~~~l~VT~lf~ppqegtsds~~a~deee~fe~q---~~rgLeiVG 345 (444)
+|.|++.++++|++||++++ |.|+||+|+|+.+++...|+.+++++|..++...+..+++++++++ +.+|+.+||
T Consensus 1 ml~i~~~~l~~i~~ha~~~~--p~E~cGlL~G~~~~~~~~v~~~~p~~n~~~~~~~f~~dp~~~~~~~~~~~~~g~~ivG 78 (146)
T 2kks_A 1 MITLTKKQMEEMLAHARQAL--PNEACGLLGGRRDGDDRWVERVYPLNNLDQSPEHFSMDPREQLTAVKDMRKNGWVMLG 78 (146)
T ss_dssp CEEEEHHHHHHHHHHHHHHT--TSCEEEEEEEEEETTEEEEEEEECCCCCSCCSSSCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CEEECHHHHHHHHHHHHhcC--CcceEEEEEEEEcCCCcEEEEEEECCCcCCCCceEEECHHHHHHHHHHHHHCCCEEEE
Confidence 37899999999999999955 9999999999998778899999999886555555678888877764 578999999
Q ss_pred EEeCCCCCCCCCCHHHHHhHHHHhhhCCCeEEEEEccCCC-CCceeEEEecC
Q 013388 346 WIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDA-TRKHGIFRLTS 396 (444)
Q Consensus 346 WYHSHP~~~afPSstDL~tQ~sYQ~~lPeaVaLIiSP~~s-~~~LrAFRLtd 396 (444)
||||||+++|+||.+|+.+ +..+++++||+++..+ ...++||++.+
T Consensus 79 ~~HSHP~~~~~PS~~D~~~-----~~~~~~~~lIvs~~~~~~~~~~af~~~~ 125 (146)
T 2kks_A 79 NFHSHPATPARPSAEDKRL-----AFDPSLSYLIISLAEPQKPVCKSFLIKK 125 (146)
T ss_dssp EEEEESSSCSSCCHHHHTT-----CCSSSCEEEEEECSCSSSCEEEEEEECS
T ss_pred EEeCCCcCCCCCCHHHHHh-----hhcCCCeEEEEEccCCCceEEEEEEEeC
Confidence 9999999999999999985 3468999999999873 35799999965
No 7
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=99.89 E-value=1.8e-23 Score=186.71 Aligned_cols=120 Identities=15% Similarity=0.269 Sum_probs=101.8
Q ss_pred EEECHHHHHHHHHHHhccCCCCcceEEEeeeeeC-CCEEEEEEEEecCCC--CCCCceecCChHHHHHHH---hhCCCcc
Q 013388 270 LHISTTMMDNFMKLAKSNTDKNLETCGILAGSLK-NRKFYITALIIPKQE--STSDSCQATNEEEIFEVQ---DKRSLFP 343 (444)
Q Consensus 270 V~Is~~aL~kILkHA~snt~~P~EvCGLLlG~~~-~~~l~VT~lf~ppqe--gtsds~~a~deee~fe~q---~~rgLei 343 (444)
|.|++.++++|++||++.+ |.|+||||+|+.+ ++.+.|+.++++++. .++...+.++++++++++ +.+|+.+
T Consensus 1 l~i~~~~l~~i~~ha~~~~--p~E~cGlL~G~~~~~~~~~v~~~~p~~n~~~~~~~~~f~~dp~~~~~~~~~~~~~g~~i 78 (153)
T 2kcq_A 1 MKTTPDILDQIRVHGADAY--PEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYELTADDYRAADAAAQEQGLDV 78 (153)
T ss_dssp CBCCHHHHHHHHHHHHHHT--TSCCCEEEEEEECTTSCEEEEEEEESSCCCCCCCSCCSSCCCCSHHHHHHHHHHHTCEE
T ss_pred CEeCHHHHHHHHHHHHhcC--CcceEEEEEEeeccCCCeEEEEEEECCCCCCCCCCcEEEECHHHHHHHHHHHHHCCCeE
Confidence 4689999999999999955 9999999999997 678899999999886 555666777777776663 4789999
Q ss_pred EEEEeCCCCCCCCCCHHHHHhHHHHhhhCCCeEEEEEccCCCC-CceeEEEecC
Q 013388 344 LGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDAT-RKHGIFRLTS 396 (444)
Q Consensus 344 VGWYHSHP~~~afPSstDL~tQ~sYQ~~lPeaVaLIiSP~~s~-~~LrAFRLtd 396 (444)
||||||||.++|+||.+|+.+ ++.+++++||+++..+. ..++||++++
T Consensus 79 vG~yHSHP~~~~~PS~~D~~~-----~~~~~~~~lIvs~~~~~~~~~~af~~~~ 127 (153)
T 2kcq_A 79 VGVYHSHPDHPARPSATDLEE-----ATFPGFTYVIVSVRDGAPEALTAWALAP 127 (153)
T ss_dssp EEEEEECSSSSSSCCHHHHHT-----CCCTTSEEEEEEEETTEEEEEEEEEECT
T ss_pred EEEEeCCCCCCCCCCHHHHHh-----hhcCCCeEEEEECCCCCccEEEEEEEeC
Confidence 999999999999999999864 24689999999987654 3699999964
No 8
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=99.78 E-value=7.1e-19 Score=152.02 Aligned_cols=109 Identities=21% Similarity=0.222 Sum_probs=83.1
Q ss_pred EEEECHHHHHHHHHHHhccCCCCcceEEEeeeeeCCCEEEEEEEEecCCCCCCCceecCChHHHHH-HHhhCCCccEEEE
Q 013388 269 QLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFE-VQDKRSLFPLGWI 347 (444)
Q Consensus 269 ~V~Is~~aL~kILkHA~snt~~P~EvCGLLlG~~~~~~l~VT~lf~ppqegtsds~~a~deee~fe-~q~~rgLeiVGWY 347 (444)
+|.|++.++++|++||++.+ |.|+||+|+|+.. .|++++++++.+++.. ..|. .+..+++.+||||
T Consensus 3 ~v~i~~~~l~~i~~ha~~~~--P~E~cGlL~g~~~----~v~~~~~~p~~~~~~~-------~~f~~~~~~~~~~ivG~~ 69 (124)
T 1oi0_A 3 SMKISRGLLKTILEAAKSAH--PDEFIALLSGSKD----VMDELIFLPFVSGSVS-------AVIHLDMLPIGMKVFGTV 69 (124)
T ss_dssp SCEECHHHHHHHHHHHHHHT--TSCCEEEEEESTT----EECEEEECCCCC--------------------CCCEEEEEE
T ss_pred EEEEcHHHHHHHHHHHHhcC--CCeeEEEEecccC----EEEEEEECCCCCCCcC-------ceeeeeeccCCCEEEEEE
Confidence 47899999999999999955 9999999999874 6888898885443221 1222 2566899999999
Q ss_pred eCCCCCCCCCCHHHHHhHHHHhhhCCCeEEEEEccCCCCCceeEEEec
Q 013388 348 HTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLT 395 (444)
Q Consensus 348 HSHP~~~afPSstDL~tQ~sYQ~~lPeaVaLIiSP~~s~~~LrAFRLt 395 (444)
||||.++++||.+|+.++ .++++++||+++......+++|+..
T Consensus 70 HSHP~~~~~PS~~D~~~~-----~~~~~~~lIvs~~~~~~~~~~f~~~ 112 (124)
T 1oi0_A 70 HSHPSPSCRPSEEDLSLF-----TRFGKYHIIVCYPYDENSWKCYNRK 112 (124)
T ss_dssp EEESSSCCSCCHHHHHHH-----HHSCSEEEEEETTCCTTCEEEEETT
T ss_pred EECcCCCCccCHHHHHhh-----hcCCCEEEEEEccCCCceEEEEecC
Confidence 999999999999999863 3589999999987654457777763
No 9
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.77 E-value=3.5e-18 Score=156.72 Aligned_cols=126 Identities=10% Similarity=0.149 Sum_probs=100.5
Q ss_pred CeEEEECHHHHHHHHHHHhccC--CCCcceEEEeeeeeCCCEEEEEEEEecCCCCCCCc--eecCChHHHHHH---Hh--
Q 013388 267 PLQLHISTTMMDNFMKLAKSNT--DKNLETCGILAGSLKNRKFYITALIIPKQESTSDS--CQATNEEEIFEV---QD-- 337 (444)
Q Consensus 267 ~r~V~Is~~aL~kILkHA~snt--~~P~EvCGLLlG~~~~~~l~VT~lf~ppqegtsds--~~a~deee~fe~---q~-- 337 (444)
...|.|.+.++.+|++||.+.. +.+.|+||+|+|...++.+.|+++|+++...+... ..+.+++.+.++ ..
T Consensus 7 ~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~~~~v 86 (187)
T 2o95_A 7 VQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKV 86 (187)
T ss_dssp CSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESSSEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHHHHTT
T ss_pred CCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcCCEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHHHHHh
Confidence 5789999999999999997631 14899999999999888999999999998654432 334554432222 12
Q ss_pred hCCCccEEEEeCCCCCCCCCCHHHHHhHHHHhhhCCCeEEEEEccCCCC--CceeEEEecC
Q 013388 338 KRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDAT--RKHGIFRLTS 396 (444)
Q Consensus 338 ~rgLeiVGWYHSHP~~~afPSstDL~tQ~sYQ~~lPeaVaLIiSP~~s~--~~LrAFRLtd 396 (444)
..++.+||||||||.. |..|+..|..||...+.+++||+|+..+. ..++||++.+
T Consensus 87 ~~~~~iVGWY~s~~~~----s~~d~~i~~~~~~~~~~~v~Livd~~~~~~~l~i~ay~~~~ 143 (187)
T 2o95_A 87 NARERIVGWYHTGPKL----HKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVE 143 (187)
T ss_dssp SSSCEEEEEEECCSSC----CTTHHHHHHHHTTTCTTCEEEEECCCTTC-CCSEEEEEEEE
T ss_pred CCCCCEEEEEcCCCcC----CcccHHHHHHHHhcCCCCEEEEECCCCCCCCcCeEEEEEec
Confidence 5689999999999985 67888888889999999999999997753 3699999985
No 10
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.2e-17 Score=170.99 Aligned_cols=136 Identities=17% Similarity=0.265 Sum_probs=115.9
Q ss_pred CeEEEECHHHHHHHHHHHhccCCCCcceEEEeeeeeC-C--CEEEEEEEEecCCCCCCCceecC--ChHHHHHHHhhCCC
Q 013388 267 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLK-N--RKFYITALIIPKQESTSDSCQAT--NEEEIFEVQDKRSL 341 (444)
Q Consensus 267 ~r~V~Is~~aL~kILkHA~snt~~P~EvCGLLlG~~~-~--~~l~VT~lf~ppqegtsds~~a~--deee~fe~q~~rgL 341 (444)
...+.||++++.+|+..|+.+ .|+||+|.|+.. + ++++|++++++||.|+.++|.+. ...+.|. ...+|
T Consensus 348 ~~tyVlPkNLLkKFI~IADlr----TQicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~~sv~lp~lp~he~~~--~l~dL 421 (565)
T 3sbg_A 348 QNVYVLPKNLLKKFIEISDVK----IQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLP--DTEGL 421 (565)
T ss_dssp SCEEEEEHHHHHHHHHHSCSS----SCCEEEEEEEEETTEEEEEEEEEEECCCEEECSSCEEECCCCCCTTST--TCTTC
T ss_pred CcEEEccHHHHHHHHHHhhcc----ceeEEEEecCCCCCCCCeEEEEEEEECCccCCCceEECCCCCcccccc--ccccC
Confidence 567999999999999999884 499999999986 3 67999999999999999999876 1112111 25889
Q ss_pred ccEEEEeCCCCCCCCCCHHHHHhHHHHhhhC-CCeEEEEEccCCCCCceeEEEecCCCCchhhhhcccC
Q 013388 342 FPLGWIHTHPTQSCFMSSIDVHTHYSYQIML-PESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQR 409 (444)
Q Consensus 342 eiVGWYHSHP~~~afPSstDL~tQ~sYQ~~l-PeaVaLIiSP~~s~~~LrAFRLtdP~Gm~~ik~C~~~ 409 (444)
+++||+||||...||+|+.|+++|+++.... ..+|.|.|+.+.++..+.||.|++ +|.+|+++=++.
T Consensus 422 e~LGWIHTqp~et~fLSs~Dl~THakl~~~n~~~~I~itvsftPGS~SLsAy~LT~-eGyeWG~~N~d~ 489 (565)
T 3sbg_A 422 ELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTPGSVSLSAYNLTD-EGYQWGEENKDI 489 (565)
T ss_dssp EEEEEEEEESSCCSSCCHHHHHHHHHHHSSSCTTCEEEEEEEETTEEEEEEEEECH-HHHHHHHTTTTC
T ss_pred EecceeeecCCcccccCHHHHHHHHHHHHhCCCCeEEEEEEecCCceEEEEEecCH-hHHHHHhhcccc
Confidence 9999999999999999999999999875433 378999999999988999999997 899999976653
No 11
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.60 E-value=5.4e-15 Score=131.80 Aligned_cols=115 Identities=14% Similarity=0.158 Sum_probs=86.5
Q ss_pred CeEEEECHHHHHHHHHHHhcc---CCCCcceEEEeeeeeCCCEEEEEEEEecCCCCCCCceecCChHHH---HHHH--hh
Q 013388 267 PLQLHISTTMMDNFMKLAKSN---TDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEI---FEVQ--DK 338 (444)
Q Consensus 267 ~r~V~Is~~aL~kILkHA~sn---t~~P~EvCGLLlG~~~~~~l~VT~lf~ppqegtsds~~a~deee~---fe~q--~~ 338 (444)
...|.|.+.++.+|++|+.+. .+.+.+++|+|+|..+++.++|+++|++|.+.+++.+ ..|.+.+ ++.. -.
T Consensus 5 ~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~~~veV~nsF~~p~~~~~~~~-~~d~~y~~~m~~~~k~v~ 83 (141)
T 4e0q_A 5 SVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDET-VINKDYYNKKEQQYKQVF 83 (141)
T ss_dssp CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEETTEEEEEEEEECCEEEETTEE-EECHHHHHHHHHHHHHHS
T ss_pred cEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeCCEEEEEEEEEecccCCCCce-eecHHHHHHHHHHHHHhC
Confidence 578999999999999999662 1237899999999999999999999999987655544 3443222 2221 25
Q ss_pred CCCccEEEEeCCCCCCCCCCHHHHHhHHHHhhhCCCeEEEEEccCCCC
Q 013388 339 RSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDAT 386 (444)
Q Consensus 339 rgLeiVGWYHSHP~~~afPSstDL~tQ~sYQ~~lPeaVaLIiSP~~s~ 386 (444)
.++.+||||||||. ++..|+..|..|+...+..|+|++||..+.
T Consensus 84 ~~e~iVGWY~s~~~----~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~ 127 (141)
T 4e0q_A 84 SDLDFIGWYTTGDN----PTADDIKIQRQIAAINECPIMLQLNPLSRS 127 (141)
T ss_dssp TTCEEEEEEEEEC-----------CHHHHHHHTTCCCEEEEESCSCCC
T ss_pred CCccEEEEEeCCCC----CCcchHHHHHHHHHHCCCCEEEEECCCccC
Confidence 78999999999984 889999999999999999999999998765
No 12
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.05 E-value=2.3e-09 Score=107.32 Aligned_cols=126 Identities=10% Similarity=0.174 Sum_probs=91.7
Q ss_pred CeEEEECHHHHHHHHHHHhc-cCCCCcceEEEeeeeeCCCEEEEEEEEecCCCCC--CCceecCChHH---HHHHH--hh
Q 013388 267 PLQLHISTTMMDNFMKLAKS-NTDKNLETCGILAGSLKNRKFYITALIIPKQEST--SDSCQATNEEE---IFEVQ--DK 338 (444)
Q Consensus 267 ~r~V~Is~~aL~kILkHA~s-nt~~P~EvCGLLlG~~~~~~l~VT~lf~ppqegt--sds~~a~deee---~fe~q--~~ 338 (444)
...|.|-+.++.+|+.|+.+ ....+..|+|.|+|..+++.++|+++|++|...+ .....+.|... .++.. -.
T Consensus 5 ~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kkV~ 84 (338)
T 4b4t_U 5 HEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKIN 84 (338)
T ss_dssp CSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECSSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHHHC
T ss_pred CCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcCCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhhcC
Confidence 46799999999999999864 2234668999999999999999999999885422 22223344322 22221 25
Q ss_pred CCCccEEEEeCCCCCCCCCCHHHHHhHHHHhhhC-CCeEEEEEccCCCCC--ceeEEEecC
Q 013388 339 RSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIML-PESVAIVMAPQDATR--KHGIFRLTS 396 (444)
Q Consensus 339 rgLeiVGWYHSHP~~~afPSstDL~tQ~sYQ~~l-PeaVaLIiSP~~s~~--~LrAFRLtd 396 (444)
..+.+||||||+|. ++..|+..|..|+... +..+.+++++..... .++||....
T Consensus 85 ~~e~iVGWY~tg~~----~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~~~~~lpi~aY~s~~ 141 (338)
T 4b4t_U 85 AKEKLIGWYHSGPK----LRASDLKINELFKKYTQNNPLLLIVDVKQQGVGLPTDAYVAIE 141 (338)
T ss_dssp CSCEEEEEEECCSS----CCSTHHHHHHHHGGGCCSCCCEEEECSCCCSSSCSEEEEEEEE
T ss_pred ccCCEEEEEecCCC----CCccHHHHHHHHHhccCCCcEEEEecCCCCCCCcceEEEEeeh
Confidence 78899999999775 6778888888888876 466778888765543 589997653
No 13
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=93.45 E-value=0.53 Score=41.03 Aligned_cols=89 Identities=21% Similarity=0.200 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhccCCCCcceEEEeeeeeCCCEEEEEEEEecCCCCCCCceecCChHHHHHHHhhCCCccEEEEeCCCCC
Q 013388 274 TTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGWIHTHPTQ 353 (444)
Q Consensus 274 ~~aL~kILkHA~snt~~P~EvCGLLlG~~~~~~l~VT~lf~ppqegtsds~~a~deee~fe~q~~rgLeiVGWYHSHP~~ 353 (444)
...+.++++..-. ..+.|...+|+=...++.+....++. |+-+.+ ..++.++|..+...+..-|...|-||++
T Consensus 8 ~~~v~~~l~~~l~--~~~~E~f~vl~Ld~~n~li~~~~l~~----Gt~~~~-~v~pRei~~~Al~~~A~~vIl~HNHPSG 80 (126)
T 2qlc_A 8 ARDVFEYMKGRIP--DETKEHLFVLFLSTKNQILRHETITI----GTLTAS-LIHPREIFKAAIRESAHSIILVHNHPSG 80 (126)
T ss_dssp HHHHHHHHTTCCS--CTTSCEEEEEEECTTCBEEEEEEEEE----SSCCGG-GCCHHHHHHHHHHTTCSEEEEEEECSSS
T ss_pred HHHHHHHHHHHhC--cCCCeEEEEEEEcCCCCEEEEEEecC----CCCCcE-eecHHHHHHHHHHcCCcEEEEEecCCCC
Confidence 3344444444333 23678765554222234444444432 333333 3568899988888888999999999999
Q ss_pred CCCCCHHHHHhHHHHh
Q 013388 354 SCFMSSIDVHTHYSYQ 369 (444)
Q Consensus 354 ~afPSstDL~tQ~sYQ 369 (444)
.+.||..|+..-...+
T Consensus 81 ~~~PS~~D~~~T~~l~ 96 (126)
T 2qlc_A 81 DVQPSNADKQVTSILK 96 (126)
T ss_dssp CCSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999997544433
No 14
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=60.27 E-value=5.2 Score=35.65 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhhhCHHHHHHHHH
Q 013388 19 GIKLLNALSELEELQPAVQQKINE 42 (444)
Q Consensus 19 ~~~l~~~~~ele~lkp~~~~~~~~ 42 (444)
.+++..|+.|||+|||.+++|.++
T Consensus 94 k~~~~~vl~~lE~LK~~L~~rYe~ 117 (144)
T 2a9u_A 94 PGNIKKAVEEAERLSESLKLRYEE 117 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778999999999999999988
No 15
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=38.35 E-value=19 Score=31.87 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=20.4
Q ss_pred HHHHHHHHH-HHHhhhhCHHHHHHHH
Q 013388 17 EKGIKLLNA-LSELEELQPAVQQKIN 41 (444)
Q Consensus 17 ~~~~~l~~~-~~ele~lkp~~~~~~~ 41 (444)
++.+++..+ +.+||+|||.+.++-+
T Consensus 90 ~~l~~l~~~~~~~lE~LK~~L~~rY~ 115 (146)
T 2xze_A 90 DTVKKLKEIAFPKAEELKAELLKRYT 115 (146)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 445566666 9999999999999888
No 16
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=28.61 E-value=17 Score=28.41 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhhCHHHHHHHH
Q 013388 21 KLLNALSELEELQPAVQQKIN 41 (444)
Q Consensus 21 ~l~~~~~ele~lkp~~~~~~~ 41 (444)
|.-+|++|||.||-+.||-=+
T Consensus 5 kv~~vl~ELeRlkveiQRLE~ 25 (67)
T 1wmi_B 5 KVGDVLKELERLKVEIQRLEA 25 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445699999999999887544
Done!