BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013389
         (444 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalanine Hydroxylase
 pdb|2PHM|A Chain A, Structure Of Phenylalanine Hydroxylase Dephosphorylated
          Length = 429

 Score = 34.3 bits (77), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER--DEALNIFYVTDEMGNPADPK 382
            + L   +++  G LA V R F EN +N+T  E    R   +    F   D+   P    
Sbjct: 34  AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGS 93

Query: 383 IIEAVRQKIG 392
           II+++R  IG
Sbjct: 94  IIKSLRNDIG 103


>pdb|1U8S|A Chain A, Crystal Structure Of Putative Glycine Cleavage System
           Transcriptional Repressor
 pdb|1U8S|B Chain B, Crystal Structure Of Putative Glycine Cleavage System
           Transcriptional Repressor
          Length = 192

 Score = 29.6 bits (65), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 8/62 (12%)

Query: 123 GTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEA 182
           GTDR G+ +EV  ++    C+++++++         L+ +    SGSP      I R+E 
Sbjct: 13  GTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLI----SGSP----SNITRVET 64

Query: 183 RL 184
            L
Sbjct: 65  TL 66


>pdb|1QH3|A Chain A, Human Glyoxalase Ii With Cacodylate And Acetate Ions
          Present In The Active Site
 pdb|1QH3|B Chain B, Human Glyoxalase Ii With Cacodylate And Acetate Ions
          Present In The Active Site
 pdb|1QH5|A Chain A, Human Glyoxalase Ii With
          S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
 pdb|1QH5|B Chain B, Human Glyoxalase Ii With
          S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
          Length = 260

 Score = 29.6 bits (65), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 1  MKDMEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAV 53
          MK    PA  D Y  LVI   T    I + V P      VD+AR+HG+ L  V
Sbjct: 1  MKVEVLPALTDNYMYLVIDDETKEAAIVDPVQPQKV---VDAARKHGVKLTTV 50


>pdb|4I78|A Chain A, Crystal Structure Of A Subtype H17 Hemagglutinin Homologue
           From A/little Yellow-shouldered Bat/guatemala/060/2010
           (h17n10)
 pdb|4I78|B Chain B, Crystal Structure Of A Subtype H17 Hemagglutinin Homologue
           From A/little Yellow-shouldered Bat/guatemala/060/2010
           (h17n10)
          Length = 328

 Score = 29.6 bits (65), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 8/68 (11%)

Query: 87  NKLTDESV-ISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQC-SV 144
           N L +++V ++  ++ LET H G+  S NG+  L+L      G L      L +  C ++
Sbjct: 21  NTLLEQNVPVTGAQEILETNHNGKLCSLNGVPPLDLQSCTLAGWL------LGNPNCDNL 74

Query: 145 VEAKVWTH 152
           +EA+ W++
Sbjct: 75  LEAEEWSY 82


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,684,977
Number of Sequences: 62578
Number of extensions: 450146
Number of successful extensions: 1236
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1235
Number of HSP's gapped (non-prelim): 5
length of query: 444
length of database: 14,973,337
effective HSP length: 102
effective length of query: 342
effective length of database: 8,590,381
effective search space: 2937910302
effective search space used: 2937910302
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)