BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013389
(444 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1
Length = 936
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 25/206 (12%)
Query: 125 DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARL 184
D GL S++ +A ++++AK+ T + A I+ G IE ++I R+ +
Sbjct: 735 DHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIFTVQTLEGHAIEKEERIARLAKTV 794
Query: 185 RNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMP-VLRHSTDYPVVTVQNWA 243
R+VL GD + A R R+P RH T P V V N A
Sbjct: 795 RDVLTGDLPLEKA--------------------LRRQPPRLPERTRHLTVPPRVIVDNQA 834
Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISS 303
++++V+ + +DR L+ V LTD+ + A ++T GER FY++ + G I
Sbjct: 835 SKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYVKDVFGMKIVH 894
Query: 304 EPERQRVIQCLEAA----VGRRASEG 325
+ ++ + LEAA V R+ EG
Sbjct: 895 RAKLAQIREALEAAITQTVPRKVEEG 920
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV++DN T T+++++ R G L + LTD+ + I A +S+ G +D F+V
Sbjct: 826 PRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYVK 885
Query: 83 DLNGNKLTDESVISYIEQSLE 103
D+ G K+ + ++ I ++LE
Sbjct: 886 DVFGMKIVHRAKLAQIREALE 906
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 31/146 (21%)
Query: 50 LEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGR 109
+ L +N+L K SDG +D+F V L G+ + E I+ + +++ + G
Sbjct: 743 IAGAMALAGVNILDAKITTMSDG-GALDIFTVQTLEGHAIEKEERIARLAKTVRDVLTGD 801
Query: 110 ------------------------------SNSFNGLTALELTGTDRVGLLSEVFAVLAD 139
+ + T +E+ G DR G L V L D
Sbjct: 802 LPLEKALRRQPPRLPERTRHLTVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTD 861
Query: 140 LQCSVVEAKVWTHNGRIASLIYVKDC 165
+ + A+V T+ R+ YVKD
Sbjct: 862 VAVQISSARVSTYGERVVDSFYVKDV 887
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMG 376
+E+ DR G L VTR + + ++ A VST + ++ FYV D G
Sbjct: 841 IEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYVKDVFG 889
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 22/206 (10%)
Query: 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIED 173
G+T L + D GL S++ LA S+V+A++ T +G +V+D G E+
Sbjct: 754 GVTELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQD-GEGCSFEE 812
Query: 174 SQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTH-TERRLHQMMFADRDYERMPVLRHST 232
Q+ R+ + L G DIR + A H T RR+ +
Sbjct: 813 PHQLGRLNHLVEQALSGRLDIRKG---IEDASHHSTSRRMRAIHVP-------------- 855
Query: 233 DYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFY 292
P V + N A ++V+ V +DR LL DV L+ + A I T G RA FY
Sbjct: 856 --PRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRAVDVFY 913
Query: 293 IRHIDGTPISSEPERQRVIQCLEAAV 318
+R + G I+ R+ + L A++
Sbjct: 914 VRDLLGMKITDPVRLARLRETLLASL 939
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRVVIDN T+++V+ R G+L + L+ +L I A+I++ G +DVF+V
Sbjct: 856 PRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRAVDVFYVR 915
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G K+TD ++ + ++L
Sbjct: 916 DLLGMKITDPVRLARLRETL 935
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 83/218 (38%), Gaps = 48/218 (22%)
Query: 206 THTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVV 265
T T+ R H M D D R PV + YP+ +R + + V C D L +
Sbjct: 723 TDTQMR-HARMVHDSDRYRSPVTVEA--YPI------PERGVTELTVLCADHPGLFSQIA 773
Query: 266 CTLTDMEYVVFHATINTAGERAYLE-FYIRHIDGTPISSEPERQRVIQCLEAAVGRRAS- 323
L + A I+T + L+ F+++ +G + R+ +E A+ R
Sbjct: 774 GALAVSGASIVDARIHTLSDGMALDTFWVQDGEGCSFEEPHQLGRLNHLVEQALSGRLDI 833
Query: 324 -EGVR--------------------------------LELCMEDRQGLLADVTRTFRENG 350
+G+ +E+ DR GLL DVT
Sbjct: 834 RKGIEDASHHSTSRRMRAIHVPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSAS 893
Query: 351 LNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVR 388
L ++ A ++T A+++FYV D +G KI + VR
Sbjct: 894 LQISSAHITTYGMRAVDVFYVRDLLGM----KITDPVR 927
>sp|A6U5G1|GLND_SINMW [Protein-PII] uridylyltransferase OS=Sinorhizobium medicae (strain
WSM419) GN=glnD PE=3 SV=1
Length = 949
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 52/87 (59%)
Query: 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
TP V I NA+ T+++V+ R G+L E VL+DL+L I A+I++ G +D F+V
Sbjct: 830 TPEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYV 889
Query: 82 TDLNGNKLTDESVISYIEQSLETIHYG 108
TDL G+K+T E+ I L+ + G
Sbjct: 890 TDLVGSKITSENRQMNIAARLKAVLAG 916
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%)
Query: 229 RHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAY 288
R T P VT+ N ++V+ V+ DRT LL +V L+D+ + A I T GE+
Sbjct: 825 RAFTVTPEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVI 884
Query: 289 LEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEG 325
FY+ + G+ I+SE + + L+A + E
Sbjct: 885 DTFYVTDLVGSKITSENRQMNIAARLKAVLAGEVDEA 921
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 334 DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGN 377
DR GLL++VT + L++ A ++T ++ ++ FYVTD +G+
Sbjct: 852 DRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGS 895
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 36/217 (16%)
Query: 109 RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNS 167
R + +T + + TD GL S + LA +V+A+++T NG + V+D
Sbjct: 737 RIDRGRAITEVTIFATDHHGLFSRLAGALAAAGADIVDARIFTMTNGMALDVFTVQDAAG 796
Query: 168 GSPIEDSQQIDRIEARLRNVLKG------DNDIRSAKMTVSMAVTHTERRLHQMMFADRD 221
G E ++ ++ + VL G D R A V H
Sbjct: 797 GGAFESGDKLAKLSVMIEKVLSGQLKPLHDLTKRKAPHASRTRVFHVP------------ 844
Query: 222 YERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATIN 281
P V + N A +++V+ V +DR LL+D+ LT++ + A I+
Sbjct: 845 -------------PRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKIS 891
Query: 282 TAGERAYLEFYIRHIDGTPISSEPE----RQRVIQCL 314
T GE+A FY++ + G ++ E + R+R++ L
Sbjct: 892 TYGEKAIDVFYVKDVFGLKVTHENKLAQIRERLLHAL 928
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV+IDN T T+++V+ R G+L + + LT+L L I A IS+ G +DVF+V
Sbjct: 845 PRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYVK 904
Query: 83 DLNGNKLTDESVISYIEQSL 102
D+ G K+T E+ ++ I + L
Sbjct: 905 DVFGLKVTHENKLAQIRERL 924
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMG 376
+E+ DR GLL D+TR L ++ A++ST ++A+++FYV D G
Sbjct: 860 IEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYVKDVFG 908
>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3
SV=2
Length = 948
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V+I N++ T+++V+ R G+L E VL+DL+L I+ A I++ G +D F+V
Sbjct: 826 PSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVA 885
Query: 83 DLNGNKLTDESVISYIEQSLETIHYGRSN 111
DL G K+++E+ +YI L+ + G +
Sbjct: 886 DLVGQKISNENRRAYITARLKAVMAGEED 914
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 235 PVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIR 294
P V + N ++V+ V+C DR LL ++ L+D+ + A I T GE+ FY+
Sbjct: 826 PSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVA 885
Query: 295 HIDGTPISSEPERQRVIQCLEAAVG 319
+ G IS+E R + L+A +
Sbjct: 886 DLVGQKISNENRRAYITARLKAVMA 910
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 331 CMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGN 377
C+ DR GLL+++T + L++ A ++T ++ ++ FYV D +G
Sbjct: 845 CL-DRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVADLVGQ 890
>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain
1021) GN=glnD PE=3 SV=1
Length = 949
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 51/87 (58%)
Query: 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
TP V I N + T+++V+ R G+L E VL+DL+L I A+I++ G +D F+V
Sbjct: 830 TPEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYV 889
Query: 82 TDLNGNKLTDESVISYIEQSLETIHYG 108
TDL G+K+T E+ I L+ + G
Sbjct: 890 TDLVGSKITSENRQMNIAARLKAVLAG 916
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%)
Query: 229 RHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAY 288
R T P VT+ N ++V+ V+ DRT LL +V L+D+ + A I T GE+
Sbjct: 825 RAFTVTPEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVI 884
Query: 289 LEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEG 325
FY+ + G+ I+SE + + L+A + E
Sbjct: 885 DTFYVTDLVGSKITSENRQMNIAARLKAVLAGEVDEA 921
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 334 DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGN 377
DR GLL++VT + L++ A ++T ++ ++ FYVTD +G+
Sbjct: 852 DRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGS 895
>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=glnD PE=3 SV=1
Length = 942
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 26/228 (11%)
Query: 99 EQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIA 157
E++L T+ R++SF+ +T + + D LLS + A ++ +A+++T +GR
Sbjct: 713 EKALSTM--VRTHSFHAITEITVLAPDHPRLLSIITGACAAAGANIADAQIFTTSDGRAL 770
Query: 158 SLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVS-MAVTHTERRLHQMM 216
I + N PI++ + R NV K ++ S K + M T T+ R +
Sbjct: 771 DTILI---NREFPIDEDET-----RRGANVGKLIEEVLSGKQRLPEMIATRTKSRRKKSA 822
Query: 217 FADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVF 276
F T P VT+ N ++V+ V+C DR LL D+ + D+ +
Sbjct: 823 F--------------TIPPSVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIH 868
Query: 277 HATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASE 324
A I T GE+ FY+ + G ++++ + + Q L+A + + E
Sbjct: 869 SARITTFGEKVIDTFYVTDLFGQKVTNDNRQASIAQRLKAVMSEQEDE 916
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V I N + T+++V+ R G+L + V+ DL+L I A I++ G +D F+VT
Sbjct: 827 PSVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYVT 886
Query: 83 DLNGNKLTDESVISYIEQSLETI 105
DL G K+T+++ + I Q L+ +
Sbjct: 887 DLFGQKVTNDNRQASIAQRLKAV 909
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 331 CMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGN 377
C+ DR GLLAD+T + L++ A ++T ++ ++ FYVTD G
Sbjct: 846 CL-DRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYVTDLFGQ 891
>sp|Q2N784|GLND_ERYLH [Protein-PII] uridylyltransferase OS=Erythrobacter litoralis
(strain HTCC2594) GN=glnD PE=3 SV=1
Length = 919
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV+ DN T+++V++ R +L + L + ++++ A+I++ G D F+VT
Sbjct: 825 PRVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVT 884
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G K+TDES + I Q+L
Sbjct: 885 DLTGAKITDESRMDTIRQAL 904
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 105/267 (39%), Gaps = 30/267 (11%)
Query: 64 KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISY-----IEQSLETIHYGRSNSFNGLTA 118
K A + GR D + + + + +++ Y I + L +IH + G T
Sbjct: 673 KAALLEKHGRLLPDSYWIAE--PENVISRNIVQYDVAREISEDL-SIHC-EFDEERGATL 728
Query: 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQID 178
+ + D GL + + ++++A++ T A Y+ G P + +Q+
Sbjct: 729 VTVIAADHPGLFYRIAGGIHLAGGNIIDARIHTTRNGWAIDNYLVQDPVGQPFAEERQLA 788
Query: 179 RIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVT 238
RIE + + + ++ +A +R L Q D P V
Sbjct: 789 RIEQAIADAIAN-----RGELVPKLA----KRPLKQTRAGAFDVR-----------PRVL 828
Query: 239 VQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDG 298
N A ++V+ V +DR LL + L + + +V A I GERA FY+ + G
Sbjct: 829 FDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVTDLTG 888
Query: 299 TPISSEPERQRVIQC-LEAAVGRRASE 324
I+ E + Q L+AA R +E
Sbjct: 889 AKITDESRMDTIRQALLDAASDARQAE 915
>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=glnD PE=3 SV=1
Length = 940
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 26/185 (14%)
Query: 121 LTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPI--EDSQQI 177
+ DR GL +++ ++ L +VV A+V+T G+ + YV+D +G+P E+ + +
Sbjct: 740 IAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDV-TGAPFGCENPRAL 798
Query: 178 DRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVV 237
R+ L KGD + V + R A P V
Sbjct: 799 RRLADALEAAGKGD------ALAVEPRRGSEQTRAAAFAIA----------------PSV 836
Query: 238 TVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHID 297
T+ N A +VV +DR LL + TL D + A I+ GERA FY++ +
Sbjct: 837 TIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTE 896
Query: 298 GTPIS 302
G ++
Sbjct: 897 GGKVT 901
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%)
Query: 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
P V IDN AT+V+ R G+L + L D L I+ A+I G +D F+V
Sbjct: 833 APSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYV 892
Query: 82 TDLNGNKLTD 91
G K+TD
Sbjct: 893 QTTEGGKVTD 902
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 303 SEPERQRVIQCLEAAVG--RRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVST 360
+E R+ IQ AA G R S + + +DR+GL AD+ G NV A V T
Sbjct: 711 AELARRAAIQGGAAAEGQVRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFT 770
Query: 361 ERD-EALNIFYVTDEMGNP 378
R +AL++FYV D G P
Sbjct: 771 SRQGQALDVFYVQDVTGAP 789
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 34/167 (20%)
Query: 250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLE-FYIRHIDGTPISSEPER- 307
V + KDR L D+ ++ + V A + T+ + L+ FY++ + G P E R
Sbjct: 738 VVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRA 797
Query: 308 -QRVIQCLEAAVG--------RRASEGVR----------------------LELCMEDRQ 336
+R+ LEAA RR SE R +E DR
Sbjct: 798 LRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRP 857
Query: 337 GLLADVTRTFRENGLNVTRAEVSTERDEALNIFYV-TDEMGNPADPK 382
GLL + +T ++ L++ A + + A++ FYV T E G D +
Sbjct: 858 GLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTEGGKVTDTR 904
Score = 36.6 bits (83), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 32/165 (19%)
Query: 35 ATLVKVDSARRHGILLEAVQVLTDL--NLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDE 92
A V + + R G+ + ++ L N++ + + S G+ +DVF+V D+ G E
Sbjct: 735 AAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQA-LDVFYVQDVTGAPFGCE 793
Query: 93 S--VISYIEQSLETIHYG--------------RSNSF-------------NGLTALELTG 123
+ + + +LE G R+ +F N T +E +G
Sbjct: 794 NPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASG 853
Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSG 168
DR GLL + LAD S+ A + + R YV+ G
Sbjct: 854 RDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTEGG 898
>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=glnD PE=3 SV=1
Length = 940
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 26/185 (14%)
Query: 121 LTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPI--EDSQQI 177
+ DR GL +++ ++ L +VV A+V+T G+ + YV+D +G+P E+ + +
Sbjct: 740 IAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDV-TGAPFGCENPRAL 798
Query: 178 DRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVV 237
R+ L KGD + V + R A P V
Sbjct: 799 RRLADALEAAGKGD------ALAVEPRRGSEQTRAAAFAIA----------------PSV 836
Query: 238 TVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHID 297
T+ N A +VV +DR LL + TL D + A I+ GERA FY++ +
Sbjct: 837 TIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTE 896
Query: 298 GTPIS 302
G ++
Sbjct: 897 GGKVT 901
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%)
Query: 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
P V IDN AT+V+ R G+L + L D L I+ A+I G +D F+V
Sbjct: 833 APSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYV 892
Query: 82 TDLNGNKLTD 91
G K+TD
Sbjct: 893 QTTEGGKVTD 902
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 303 SEPERQRVIQCLEAAVG--RRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVST 360
+E R+ IQ AA G R S + + +DR+GL AD+ G NV A V T
Sbjct: 711 AELARRAAIQGGAAAEGQVRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFT 770
Query: 361 ERD-EALNIFYVTDEMGNP 378
R +AL++FYV D G P
Sbjct: 771 SRQGQALDVFYVQDVTGAP 789
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 34/167 (20%)
Query: 250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLE-FYIRHIDGTPISSEPER- 307
V + KDR L D+ ++ + V A + T+ + L+ FY++ + G P E R
Sbjct: 738 VVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRA 797
Query: 308 -QRVIQCLEAAVG--------RRASEGVR----------------------LELCMEDRQ 336
+R+ LEAA RR SE R +E DR
Sbjct: 798 LRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRP 857
Query: 337 GLLADVTRTFRENGLNVTRAEVSTERDEALNIFYV-TDEMGNPADPK 382
GLL + +T ++ L++ A + + A++ FYV T E G D +
Sbjct: 858 GLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTEGGKVTDTR 904
Score = 36.6 bits (83), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 32/165 (19%)
Query: 35 ATLVKVDSARRHGILLEAVQVLTDL--NLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDE 92
A V + + R G+ + ++ L N++ + + S G+ +DVF+V D+ G E
Sbjct: 735 AAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQA-LDVFYVQDVTGAPFGCE 793
Query: 93 S--VISYIEQSLETIHYG--------------RSNSF-------------NGLTALELTG 123
+ + + +LE G R+ +F N T +E +G
Sbjct: 794 NPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASG 853
Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSG 168
DR GLL + LAD S+ A + + R YV+ G
Sbjct: 854 RDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTEGG 898
>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv.
viciae GN=glnD PE=3 SV=2
Length = 944
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 95/220 (43%), Gaps = 28/220 (12%)
Query: 109 RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNS 167
R++SF+ +T + + D LL+ + A ++V+A+++T +GR I+V S
Sbjct: 719 RTDSFHAITEITVLSPDHPRLLAVIAGACAAAGANIVDAQIFTTSDGRALDTIHV----S 774
Query: 168 GSPIEDSQQIDR---IEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYER 224
+D+ ++ R I + +VL G K + T R F
Sbjct: 775 REFTDDADELRRAATIGRMIEDVLSG------RKRLPEVIATRARNRKKSKAFV------ 822
Query: 225 MPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG 284
+P P V + N ++V+ V+C DR LL ++ L+D+ + A I T G
Sbjct: 823 IP--------PSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFG 874
Query: 285 ERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASE 324
E+ FY+ + G IS + +R + ++A + E
Sbjct: 875 EKVIDTFYVTDLVGQKISGDSKRANITARMKAVMAEEEDE 914
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V I N++ T+++V+ R G+L E VL+DL+L I+ A I++ G +D F+VT
Sbjct: 825 PSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVT 884
Query: 83 DLNGNKLTDESVISYIEQSLETI 105
DL G K++ +S + I ++ +
Sbjct: 885 DLVGQKISGDSKRANITARMKAV 907
Score = 35.4 bits (80), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 331 CMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGN 377
C+ DR GLL+++T + L++ A ++T ++ ++ FYVTD +G
Sbjct: 844 CL-DRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVTDLVGQ 889
>sp|A6WV84|GLND_OCHA4 [Protein-PII] uridylyltransferase OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=glnD PE=3 SV=1
Length = 934
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 54/90 (60%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV I+N + T+++V+ R G+L E +++DL+L I A+I++ G +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DLNGNKLTDESVISYIEQSLETIHYGRSNS 112
DL G+K+++ + I + L + G + S
Sbjct: 894 DLVGHKISNATRQGNIRRKLLGVLSGENGS 923
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIED 173
N T +E+ G DR GLLSE+ +++DL + A + T ++ YV D G I +
Sbjct: 844 NKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL-VGHKISN 902
Query: 174 SQQIDRIEARLRNVLKGDN 192
+ + I +L VL G+N
Sbjct: 903 ATRQGNIRRKLLGVLSGEN 921
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 93/207 (44%), Gaps = 26/207 (12%)
Query: 99 EQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIA 157
E++L T+ + ++F +T + + D LLS + A ++V+A+++T +GR
Sbjct: 720 ERALATM--AKPHTFEAVTEITVLAPDHPRLLSIITGACAAAGANIVDAQIFTTGDGRAL 777
Query: 158 SLIYV-KDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMM 216
I + ++ ++ ++ ++ +R+ + +VL G A + +A +R +
Sbjct: 778 DTILISREFDTDD--DERRRAERVGKVIEDVLSG-----KAHLPDVLAKRTKPKRAAKAF 830
Query: 217 FADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVF 276
+ P V + N ++V+ V+ DR LL ++ ++D+ +
Sbjct: 831 KVE---------------PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIA 875
Query: 277 HATINTAGERAYLEFYIRHIDGTPISS 303
A I T GE+ FY+ + G IS+
Sbjct: 876 SAHITTFGEKVIDSFYVTDLVGHKISN 902
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 11/84 (13%)
Query: 334 DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393
DR GLL+++T + L++ A ++T ++ ++ FYVTD +G+ KI A RQ
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGH----KISNATRQ---- 906
Query: 394 SNLKVKELPMIYHQKGESEEQTVG 417
N++ K L ++ GE+ +T G
Sbjct: 907 GNIRRKLLGVL---SGENGSKTNG 927
>sp|Q8G312|GLND_BRUSU [Protein-PII] uridylyltransferase OS=Brucella suis biovar 1 (strain
1330) GN=glnD PE=3 SV=1
Length = 934
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV I+N + T+++V+ R G+L E +++DL+L I A+I++ G +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G+K+++ + I++ L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 98/231 (42%), Gaps = 26/231 (11%)
Query: 99 EQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIA 157
+Q + + ++F +T + + D LLS + A ++V+A+++T NGR
Sbjct: 718 QQGRALVTMAKPHAFEAVTEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSNGRAL 777
Query: 158 SLIYV-KDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMM 216
I + ++ ++ ++ ++ +R+ + +VL G + M
Sbjct: 778 DTILISREFDTDD--DERRRAERVGKVIEDVLSGKAHLPD-------------------M 816
Query: 217 FADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVF 276
A R + + P V + N ++V+ V+ DR LL ++ ++D+ +
Sbjct: 817 LAKRTKPKKAARAFKVE-PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIA 875
Query: 277 HATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVR 327
A I T GE+ FY+ + G IS+ + + + L A +G A G R
Sbjct: 876 SAHITTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKLLALLG--AENGAR 924
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 334 DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393
DR GLL+++T + L++ A ++T ++ ++ FYVTD +G+ KI A RQ
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGH----KISNATRQ---- 906
Query: 394 SNLKVKELPMIYHQKG 409
N+K K L ++ + G
Sbjct: 907 GNIKRKLLALLGAENG 922
>sp|Q8YES3|GLND_BRUME [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=glnD PE=3 SV=1
Length = 934
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV I+N + T+++V+ R G+L E +++DL+L I A+I++ G +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G+K+++ + I++ L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 98/231 (42%), Gaps = 26/231 (11%)
Query: 99 EQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIA 157
+Q + + ++F +T + + D LLS + A ++V+A+++T +GR
Sbjct: 718 QQGRALVTMAKPHAFEAVTEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSDGRAL 777
Query: 158 SLIYV-KDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMM 216
I + ++ ++ ++ ++ +R+ + +VL G + M
Sbjct: 778 DTILISREFDTDD--DERRRAERVGKVIEDVLSGKAHLPD-------------------M 816
Query: 217 FADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVF 276
A R + + P V + N ++V+ V+ DR LL ++ ++D+ +
Sbjct: 817 LAKRTKPKKAARAFKVE-PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIA 875
Query: 277 HATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVR 327
A I T GE+ FY+ + G IS+ + + + L A +G A G R
Sbjct: 876 SAHITTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKLLALLG--AENGAR 924
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 334 DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393
DR GLL+++T + L++ A ++T ++ ++ FYVTD +G+ KI A RQ
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGH----KISNATRQ---- 906
Query: 394 SNLKVKELPMIYHQKG 409
N+K K L ++ + G
Sbjct: 907 GNIKRKLLALLGAENG 922
>sp|Q57FN0|GLND_BRUAB [Protein-PII] uridylyltransferase OS=Brucella abortus biovar 1
(strain 9-941) GN=glnD PE=3 SV=1
Length = 934
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV I+N + T+++V+ R G+L E +++DL+L I A+I++ G +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G+K+++ + I++ L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 98/231 (42%), Gaps = 26/231 (11%)
Query: 99 EQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIA 157
+Q + + ++F +T + + D LLS + A ++V+A+++T +GR
Sbjct: 718 QQGRALVTMAKPHAFEAVTEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSDGRAL 777
Query: 158 SLIYV-KDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMM 216
I + ++ ++ ++ ++ +R+ + +VL G + M
Sbjct: 778 DTILISREFDTDD--DERRRAERVGKVIEDVLSGKAHLPD-------------------M 816
Query: 217 FADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVF 276
A R + + P V + N ++V+ V+ DR LL ++ ++D+ +
Sbjct: 817 LAKRTKPKKAARAFKVE-PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIA 875
Query: 277 HATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVR 327
A I T GE+ FY+ + G IS+ + + + L A +G A G R
Sbjct: 876 SAHITTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKLLALLG--AENGAR 924
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 334 DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393
DR GLL+++T + L++ A ++T ++ ++ FYVTD +G+ KI A RQ
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGH----KISNATRQ---- 906
Query: 394 SNLKVKELPMIYHQKG 409
N+K K L ++ + G
Sbjct: 907 GNIKRKLLALLGAENG 922
>sp|Q2YNZ1|GLND_BRUA2 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain 2308)
GN=glnD PE=3 SV=1
Length = 934
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV I+N + T+++V+ R G+L E +++DL+L I A+I++ G +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G+K+++ + I++ L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 98/231 (42%), Gaps = 26/231 (11%)
Query: 99 EQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIA 157
+Q + + ++F +T + + D LLS + A ++V+A+++T +GR
Sbjct: 718 QQGRALVTMAKPHAFEAVTEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSDGRAL 777
Query: 158 SLIYV-KDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMM 216
I + ++ ++ ++ ++ +R+ + +VL G + M
Sbjct: 778 DTILISREFDTDD--DERRRAERVGKVIEDVLSGKAHLPD-------------------M 816
Query: 217 FADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVF 276
A R + + P V + N ++V+ V+ DR LL ++ ++D+ +
Sbjct: 817 LAKRTKPKKAARAFKVE-PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIA 875
Query: 277 HATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVR 327
A I T GE+ FY+ + G IS+ + + + L A +G A G R
Sbjct: 876 SAHITTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKLLALLG--AENGAR 924
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 334 DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393
DR GLL+++T + L++ A ++T ++ ++ FYVTD +G+ KI A RQ
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGH----KISNATRQ---- 906
Query: 394 SNLKVKELPMIYHQKG 409
N+K K L ++ + G
Sbjct: 907 GNIKRKLLALLGAENG 922
>sp|B2S8D8|GLND_BRUA1 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain S19)
GN=glnD PE=3 SV=1
Length = 934
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV I+N + T+++V+ R G+L E +++DL+L I A+I++ G +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G+K+++ + I++ L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 98/231 (42%), Gaps = 26/231 (11%)
Query: 99 EQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIA 157
+Q + + ++F +T + + D LLS + A ++V+A+++T +GR
Sbjct: 718 QQGRALVTMAKPHAFEAVTEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSDGRAL 777
Query: 158 SLIYV-KDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMM 216
I + ++ ++ ++ ++ +R+ + +VL G + M
Sbjct: 778 DTILISREFDTDD--DERRRAERVGKVIEDVLSGKAHLPD-------------------M 816
Query: 217 FADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVF 276
A R + + P V + N ++V+ V+ DR LL ++ ++D+ +
Sbjct: 817 LAKRTKPKKAARAFKVE-PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIA 875
Query: 277 HATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVR 327
A I T GE+ FY+ + G IS+ + + + L A +G A G R
Sbjct: 876 SAHITTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKLLALLG--AENGAR 924
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 334 DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393
DR GLL+++T + L++ A ++T ++ ++ FYVTD +G+ KI A RQ
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGH----KISNATRQ---- 906
Query: 394 SNLKVKELPMIYHQKG 409
N+K K L ++ + G
Sbjct: 907 GNIKRKLLALLGAENG 922
>sp|B0CIQ3|GLND_BRUSI [Protein-PII] uridylyltransferase OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=glnD PE=3 SV=1
Length = 934
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV I+N + T+++V+ R G+L E +++DL+L I A+I++ G +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G+K+++ + I++ L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 98/231 (42%), Gaps = 26/231 (11%)
Query: 99 EQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIA 157
+Q + + ++F +T + + D LLS + A ++V+A+++T +GR
Sbjct: 718 QQGRALVTMAKPHAFEAVTEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSDGRAL 777
Query: 158 SLIYV-KDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMM 216
I + ++ ++ ++ ++ +R+ + +VL G + M
Sbjct: 778 DTILISREFDTDD--DERRRAERVGKVIEDVLSGKAHLPD-------------------M 816
Query: 217 FADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVF 276
A R + + P V + N ++V+ V+ DR LL ++ ++D+ +
Sbjct: 817 LAKRTKPKKAARAFKVE-PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIA 875
Query: 277 HATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVR 327
A I T GE+ FY+ + G IS+ + + + L A +G A G R
Sbjct: 876 SAHITTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKLLALLG--AENGAR 924
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 334 DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393
DR GLL+++T + L++ A ++T ++ ++ FYVTD +G+ KI A RQ
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGH----KISNATRQ---- 906
Query: 394 SNLKVKELPMIYHQKG 409
N+K K L ++ + G
Sbjct: 907 GNIKRKLLALLGAENG 922
>sp|C0RGK0|GLND_BRUMB [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=glnD PE=3 SV=1
Length = 934
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV I+N + T+++V+ R G+L E +++DL+L I A+I++ G +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G+K+++ + I++ L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 98/231 (42%), Gaps = 26/231 (11%)
Query: 99 EQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIA 157
+Q + + ++F +T + + D LLS + A ++V+A+++T +GR
Sbjct: 718 QQGRALVTMAKPHAFEAVTEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSDGRAL 777
Query: 158 SLIYV-KDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMM 216
I + ++ ++ ++ ++ +R+ + +VL G + M
Sbjct: 778 DTILISREFDTDD--DERRRAERVGKVIEDVLSGKAHLPD-------------------M 816
Query: 217 FADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVF 276
A R + + P V + N ++V+ V+ DR LL ++ ++D+ +
Sbjct: 817 LAKRTKPKKAARAFKVE-PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIA 875
Query: 277 HATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVR 327
A I T GE+ FY+ + G IS+ + + + L A +G A G R
Sbjct: 876 SAHITTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKLLALLG--AENGAR 924
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 334 DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393
DR GLL+++T + L++ A ++T ++ ++ FYVTD +G+ KI A RQ
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGH----KISNATRQ---- 906
Query: 394 SNLKVKELPMIYHQKG 409
N+K K L ++ + G
Sbjct: 907 GNIKRKLLALLGAENG 922
>sp|A5VN81|GLND_BRUO2 [Protein-PII] uridylyltransferase OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=glnD PE=3 SV=1
Length = 934
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV I+N + T+++V+ R G+L E +++DL+L I A+I++ G +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G+K+++ + I++ L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 98/231 (42%), Gaps = 26/231 (11%)
Query: 99 EQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIA 157
+Q + + ++F +T + + D LLS + A ++V+A+++T +GR
Sbjct: 718 QQGRALVTMAKPHAFEAVTEITVLAPDHPRLLSVITGACAAAGGNIVDAQIFTTSDGRAL 777
Query: 158 SLIYV-KDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMM 216
I + ++ ++ ++ +Q +R+ + +VL G + M
Sbjct: 778 DTILISREFDTDD--DERRQAERVGKVIEDVLSGKAHLPD-------------------M 816
Query: 217 FADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVF 276
A R + + P V + N ++V+ V+ DR LL ++ ++D+ +
Sbjct: 817 LAKRTKPKKAARAFKVE-PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIA 875
Query: 277 HATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVR 327
A I T GE+ FY+ + G IS+ + + + L A +G A G R
Sbjct: 876 SAHITTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKLLALLG--AENGAR 924
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIED 173
N T +E+ G DR GLLSE+ +++DL + A + T ++ YV D G I +
Sbjct: 844 NKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL-VGHKISN 902
Query: 174 SQQIDRIEARLRNVLKGDNDIRS 196
+ + I+ +L +L +N R+
Sbjct: 903 ATRQGNIKRKLLALLGAENGART 925
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 334 DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393
DR GLL+++T + L++ A ++T ++ ++ FYVTD +G+ KI A RQ
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGH----KISNATRQ---- 906
Query: 394 SNLKVKELPMIYHQKG 409
N+K K L ++ + G
Sbjct: 907 GNIKRKLLALLGAENG 922
>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4
/ ATCC BAA-846) GN=glnD PE=3 SV=1
Length = 941
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 28/229 (12%)
Query: 99 EQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIA 157
+Q+L T+ R++SF+ +T + + D LLS + A ++ +A+++T +GR
Sbjct: 712 DQALATM--VRTHSFHAITEITVLAPDHPRLLSIIAGACAAAGANIADAQIFTTSDGRAL 769
Query: 158 SLIYVKDCNSGSPIEDSQ--QIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQM 215
I + N PI++ + + + I + +VL G K + T T+ R
Sbjct: 770 DTILI---NREFPIDEDEMRRANTISKMIEDVLAGK------KRLPEVIATRTKGRKRNK 820
Query: 216 MFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVV 275
F T P VT+ N ++V+ ++C DR LL +V L D+ +
Sbjct: 821 TF--------------TVKPHVTISNSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDI 866
Query: 276 FHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASE 324
A I T GE+ FY+ + G I++E + + L+A + + E
Sbjct: 867 HSARITTFGEKVIDTFYVIDLVGQKITNENRQGSISVRLKAVMSEQPDE 915
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V I N++ T+++++ R G+L E VL DL+L I A I++ G +D F+V
Sbjct: 826 PHVTISNSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVI 885
Query: 83 DLNGNKLTDESVISYIEQSLETI 105
DL G K+T+E+ I L+ +
Sbjct: 886 DLVGQKITNENRQGSISVRLKAV 908
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 331 CMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQK 390
C+ DR GLLA+VT + L++ A ++T ++ ++ FYV D +G KI RQ
Sbjct: 845 CL-DRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVIDLVGQ----KITNENRQ- 898
Query: 391 IGLSNLKVKELPMIYHQKGESEEQ 414
++ V+ ++ Q E EQ
Sbjct: 899 ---GSISVRLKAVMSEQPDELREQ 919
>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=glnD PE=3 SV=1
Length = 933
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PR I N + ++++V+ R G+L E L+DL+L I A+I++ G +D F+VT
Sbjct: 834 PRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVT 893
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G K+ + I+ I L
Sbjct: 894 DLTGQKIDSPARIATIRNRL 913
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 34/225 (15%)
Query: 109 RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNS 167
+++ F +T + + D LLS + ++V+A+++T +GR I +
Sbjct: 728 KTHQFEAVTEITVLAQDHPRLLSVIAGACVGAGGNIVDAQIFTTADGRALDTILI----- 782
Query: 168 GSPIEDSQQIDRIE---ARLRNVLKGDNDIRSAKMTV-SMAVTHTERRLHQMMFADRDYE 223
S++ DR E R V + D+ S K + M T+ + +F
Sbjct: 783 ------SREFDRDEDERRRAERVGRLIEDVLSGKSWLPEMIEKRTKPKRGAKVF------ 830
Query: 224 RMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA 283
++P P ++N +SV+ V+ DR LL ++ TL+D+ + A I T
Sbjct: 831 KIP--------PRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTF 882
Query: 284 GERAYLEFYIRHIDGTPISSEPE----RQRVIQCLEAAVGRRASE 324
GE+ FY+ + G I S R R++ LE R +
Sbjct: 883 GEKVIDTFYVTDLTGQKIDSPARIATIRNRLMATLEGIAPERGGK 927
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 334 DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPAD-PKIIEAVRQKI 391
DR GLL+++T T + L++ A ++T ++ ++ FYVTD G D P I +R ++
Sbjct: 855 DRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTDLTGQKIDSPARIATIRNRL 913
>sp|B4RC79|GLND_PHEZH [Protein-PII] uridylyltransferase OS=Phenylobacterium zucineum
(strain HLK1) GN=glnD PE=3 SV=1
Length = 938
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
TP V++DN T+T+V+ R G+L + ++D L I A+I G +D F+V
Sbjct: 830 TPAVMLDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHIDGYGERAVDAFYV 889
Query: 82 TDLNGNKLTD 91
D +G KLTD
Sbjct: 890 VDADGRKLTD 899
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 76/192 (39%), Gaps = 38/192 (19%)
Query: 125 DRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKDCNSGSPI--EDSQQIDRIE 181
DR L ++ + +V+ A+V+T G+ + YV+D SG P D + + R+
Sbjct: 741 DRPRLFVDLAEAITAAGANVMGARVFTSRAGQALDVFYVQDA-SGQPFGSHDPRALARLA 799
Query: 182 ARLRNVLKGDNDIRSAKM------TVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYP 235
L +G+ R + T + A+T P
Sbjct: 800 ETLACAARGEPVAREPRKPQDLGRTAAFAIT----------------------------P 831
Query: 236 VVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRH 295
V + N A + +VV +DR LL + T++D + A I+ GERA FY+
Sbjct: 832 AVMLDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHIDGYGERAVDAFYVVD 891
Query: 296 IDGTPISSEPER 307
DG ++ +R
Sbjct: 892 ADGRKLTDARKR 903
Score = 39.7 bits (91), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 33/154 (21%)
Query: 256 DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLE-FYIRHIDGTPISSEPERQ--RVIQ 312
DR +L D+ +T V A + T+ L+ FY++ G P S R R+ +
Sbjct: 741 DRPRLFVDLAEAITAAGANVMGARVFTSRAGQALDVFYVQDASGQPFGSHDPRALARLAE 800
Query: 313 CLEAA---------------VGRRASEGVR---------------LELCMEDRQGLLADV 342
L A +GR A+ + +E DR GLLA +
Sbjct: 801 TLACAARGEPVAREPRKPQDLGRTAAFAITPAVMLDNEASETSTVVEASGRDRPGLLAAL 860
Query: 343 TRTFRENGLNVTRAEVSTERDEALNIFYVTDEMG 376
RT + GL++ A + + A++ FYV D G
Sbjct: 861 ARTISDAGLSILSAHIDGYGERAVDAFYVVDADG 894
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 334 DRQGLLADVTRTFRENGLNVTRAEVSTER-DEALNIFYVTDEMGNP---ADPKII 384
DR L D+ G NV A V T R +AL++FYV D G P DP+ +
Sbjct: 741 DRPRLFVDLAEAITAAGANVMGARVFTSRAGQALDVFYVQDASGQPFGSHDPRAL 795
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 31/146 (21%)
Query: 60 NLLIKKAYISSDGRFFMDVFHVTDLNGNKLT--DESVISYIEQSL--------------E 103
N++ + + S G+ +DVF+V D +G D ++ + ++L +
Sbjct: 759 NVMGARVFTSRAGQA-LDVFYVQDASGQPFGSHDPRALARLAETLACAARGEPVAREPRK 817
Query: 104 TIHYGRSNSF-------------NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW 150
GR+ +F T +E +G DR GLL+ + ++D S++ A +
Sbjct: 818 PQDLGRTAAFAITPAVMLDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHID 877
Query: 151 THNGRIASLIYVKDCNSGSPIEDSQQ 176
+ R YV D + G + D+++
Sbjct: 878 GYGERAVDAFYVVDAD-GRKLTDARK 902
>sp|Q2GAJ4|GLND_NOVAD [Protein-PII] uridylyltransferase OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=glnD PE=3 SV=1
Length = 912
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 31/217 (14%)
Query: 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIED 173
G T + + D GL + + ++++A++ T NG V+D G P+ +
Sbjct: 720 GATLVTVLAADHPGLFYRIAGGIHLAGGNIIDARIHTARNGTAVDNFLVQDP-LGRPLNE 778
Query: 174 SQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTD 233
+ QI+R++ + + L K+ +A P+ R D
Sbjct: 779 ASQIERLKNAIADALAN-----RVKLVPQLAAR-------------------PLARPRAD 814
Query: 234 Y----PVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYL 289
P+V N A ++V+ V +DR LL + L + +V A I T GERA
Sbjct: 815 AFDVRPIVIFDNKASNRFTVIEVGARDRPALLNRLARALFEARLIVHSAHIATYGERAVD 874
Query: 290 EFYIRHIDGTPISSEPERQRV-IQCLEAAVGRRASEG 325
FY+ + G + SE + V + LEAA R+ +
Sbjct: 875 TFYVTDVLGEKVDSEARMKAVEKRLLEAAEDRKVKDA 911
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V+ DN T+++V + R +L + L + L++ A+I++ G +D F+VT
Sbjct: 820 PIVIFDNKASNRFTVIEVGARDRPALLNRLARALFEARLIVHSAHIATYGERAVDTFYVT 879
Query: 83 DLNGNKLTDESVISYIEQSL 102
D+ G K+ E+ + +E+ L
Sbjct: 880 DVLGEKVDSEARMKAVEKRL 899
Score = 35.4 bits (80), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKI-IEA 386
+E+ DR LL + R E L V A ++T + A++ FYVTD +G D + ++A
Sbjct: 835 IEVGARDRPALLNRLARALFEARLIVHSAHIATYGERAVDTFYVTDVLGEKVDSEARMKA 894
Query: 387 VRQKI 391
V +++
Sbjct: 895 VEKRL 899
>sp|Q9Z9H0|GLND_PSEAE [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=glnD
PE=3 SV=2
Length = 900
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 33/203 (16%)
Query: 22 TPRVVIDNAV---CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFMD 77
TP V+I + + + + +A +H V + LNL I+ A I+S +F +D
Sbjct: 688 TPLVLIKETTQREFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLD 747
Query: 78 VFHVTDLNGNKL-TDESVISYIEQSL--------------------ETIHYG-------R 109
+ V D +G+ + + I+ I + L + H+
Sbjct: 748 TYIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFAFAPQVTIS 807
Query: 110 SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGS 169
+++ ++ LE+ DR GLL+ + + D SV AK+ T R+ + Y+ D +
Sbjct: 808 TDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDARN-Q 866
Query: 170 PIEDSQQIDRIEARLRNVLKGDN 192
P+ D R++A L L DN
Sbjct: 867 PLADPDLCKRLQAALVEQLSQDN 889
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 37/194 (19%)
Query: 227 VLRHSTD-YPVVTVQNWADRSY---SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINT 282
+L+H D P+V ++ R + S + + D+ V + + + A I T
Sbjct: 680 ILQHPDDGTPLVLIKETTQREFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIIT 739
Query: 283 AGERAYLEFYI-RHIDGTPISSEPER-----QRVIQCLE------AAVGRRASEGVR--- 327
+ + L+ YI DG I + PER + +I L+ + RR ++
Sbjct: 740 STSQFTLDTYIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFA 799
Query: 328 -----------------LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFY 370
LE+ DR GLLA + F + L+V A+++T + ++FY
Sbjct: 800 FAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFY 859
Query: 371 VTDEMGNP-ADPKI 383
+TD P ADP +
Sbjct: 860 ITDARNQPLADPDL 873
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 23/191 (12%)
Query: 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIY-VKDCNSGSPI 171
F + + + D+ + A + L S+ +A++ T + Y V D + S
Sbjct: 701 FESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSIG 760
Query: 172 EDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHS 231
+ ++I I L + LK +D T +RR+ + L+H
Sbjct: 761 NNPERIAEIREGLIDALKNPDDY----------PTIIQRRVPRQ------------LKHF 798
Query: 232 TDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEF 291
P VT+ A R SV+ V DR LL + D + V +A I T GER F
Sbjct: 799 AFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVF 858
Query: 292 YIRHIDGTPIS 302
YI P++
Sbjct: 859 YITDARNQPLA 869
>sp|A6V1D0|GLND_PSEA7 [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
PA7) GN=glnD PE=3 SV=1
Length = 900
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 33/203 (16%)
Query: 22 TPRVVIDNAV---CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFMD 77
TP V+I + + + + +A +H V + LNL I+ A I+S +F +D
Sbjct: 688 TPLVLIKETTQREFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLD 747
Query: 78 VFHVTDLNGNKL-TDESVISYIEQSL--------------------ETIHYG-------R 109
+ V D +G+ + + I+ I + L + H+
Sbjct: 748 TYIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFAFAPQVTIS 807
Query: 110 SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGS 169
+++ ++ LE+ DR GLL+ + + D SV AK+ T R+ + Y+ D +
Sbjct: 808 TDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDARN-Q 866
Query: 170 PIEDSQQIDRIEARLRNVLKGDN 192
P+ D R++A L L DN
Sbjct: 867 PLADPDLCKRLQAALVEQLSQDN 889
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 37/194 (19%)
Query: 227 VLRHSTD-YPVVTVQNWADRSY---SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINT 282
+L+H D P+V ++ R + S + + D+ V + + + A I T
Sbjct: 680 ILQHPDDGTPLVLIKETTQREFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIIT 739
Query: 283 AGERAYLEFYI-RHIDGTPISSEPER-----QRVIQCLE------AAVGRRASEGVR--- 327
+ + L+ YI DG I + PER + +I L+ + RR ++
Sbjct: 740 STSQFTLDTYIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFA 799
Query: 328 -----------------LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFY 370
LE+ DR GLLA + F + L+V A+++T + ++FY
Sbjct: 800 FAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFY 859
Query: 371 VTDEMGNP-ADPKI 383
+TD P ADP +
Sbjct: 860 ITDARNQPLADPDL 873
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 23/191 (12%)
Query: 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIY-VKDCNSGSPI 171
F + + + D+ + A + L S+ +A++ T + Y V D + S
Sbjct: 701 FESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSIG 760
Query: 172 EDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHS 231
+ ++I I L + LK +D T +RR+ + L+H
Sbjct: 761 NNPERIAEIREGLIDALKNPDDY----------PTIIQRRVPRQ------------LKHF 798
Query: 232 TDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEF 291
P VT+ A R SV+ V DR LL + D + V +A I T GER F
Sbjct: 799 AFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVF 858
Query: 292 YIRHIDGTPIS 302
YI P++
Sbjct: 859 YITDARNQPLA 869
>sp|B7V7F5|GLND_PSEA8 [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
LESB58) GN=glnD PE=3 SV=1
Length = 900
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 33/203 (16%)
Query: 22 TPRVVIDNAV---CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFMD 77
TP V+I + + + + +A +H V + LNL I+ A I+S +F +D
Sbjct: 688 TPLVLIKETTQREFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLD 747
Query: 78 VFHVTDLNGNKL-TDESVISYIEQSL--------------------ETIHYG-------R 109
+ V D +G+ + + I+ I + L + H+
Sbjct: 748 TYIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFAFAPQVTIS 807
Query: 110 SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGS 169
+++ ++ LE+ DR GLL+ + + D SV AK+ T R+ + Y+ D +
Sbjct: 808 TDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDARN-Q 866
Query: 170 PIEDSQQIDRIEARLRNVLKGDN 192
P+ D R++A L L DN
Sbjct: 867 PLADPDLCKRLQAALVEQLSQDN 889
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 37/194 (19%)
Query: 227 VLRHSTD-YPVVTVQNWADRSY---SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINT 282
+L+H D P+V ++ R + S + + D+ V + + + A I T
Sbjct: 680 ILQHPDDGTPLVLIKETTQREFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIIT 739
Query: 283 AGERAYLEFYI-RHIDGTPISSEPER-----QRVIQCLE------AAVGRRASEGVR--- 327
+ + L+ YI DG I + PER + +I L+ + RR ++
Sbjct: 740 STSQFTLDTYIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFA 799
Query: 328 -----------------LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFY 370
LE+ DR GLLA + F + L+V A+++T + ++FY
Sbjct: 800 FAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFY 859
Query: 371 VTDEMGNP-ADPKI 383
+TD P ADP +
Sbjct: 860 ITDARNQPLADPDL 873
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 23/191 (12%)
Query: 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIY-VKDCNSGSPI 171
F + + + D+ + A + L S+ +A++ T + Y V D + S
Sbjct: 701 FESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSIG 760
Query: 172 EDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHS 231
+ ++I I L + LK +D T +RR+ + L+H
Sbjct: 761 NNPERIAEIREGLIDALKNPDDY----------PTIIQRRVPRQ------------LKHF 798
Query: 232 TDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEF 291
P VT+ A R SV+ V DR LL + D + V +A I T GER F
Sbjct: 799 AFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVF 858
Query: 292 YIRHIDGTPIS 302
YI P++
Sbjct: 859 YITDARNQPLA 869
>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila
(strain L48) GN=glnD PE=3 SV=1
Length = 900
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 29/217 (13%)
Query: 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIE 172
F G T + + D+ + A +A L ++ +A++ T + + Y+ N G I
Sbjct: 701 FEGGTQIFIYAPDQHDFFAVTVAAMAQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIG 760
Query: 173 DS-QQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHS 231
D+ Q++ +I L L+ D + +RR+ + L+H
Sbjct: 761 DNPQRVKQIRDGLTEALRTPEDYPAI----------IQRRVPRQ------------LKHF 798
Query: 232 TDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEF 291
P VT+ N A R +++ + DR LL + + + + +A I T GER F
Sbjct: 799 DFPPQVTILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVF 858
Query: 292 YIRHIDGTPISSEPE-----RQRVIQCLEAAVGRRAS 323
+I D P+ S+P+ ++ +IQ L+A AS
Sbjct: 859 FITDADNQPL-SDPQLCSRLQEAIIQQLQAGQASEAS 894
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 86/211 (40%), Gaps = 37/211 (17%)
Query: 218 ADRDYERMPVLRHSTDY-PVVTVQNWADRSY---SVVNVQCKDRTKLLFDVVCTLTDMEY 273
AD + +L+ D P+V ++ R + + + + D+ V + +
Sbjct: 671 ADVAWHSDAILQQPADSGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMAQLNL 730
Query: 274 VVFHATINTAGERAYLEFYI-RHIDGTPISSEPERQRVI-----------QCLEAAVGRR 321
+ A I T+ + L+ YI DG I P+R + I + A + RR
Sbjct: 731 NIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLTEALRTPEDYPAIIQRR 790
Query: 322 ASEGVR--------------------LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE 361
++ LE+ DR GLLA + R F E +++ A+++T
Sbjct: 791 VPRQLKHFDFPPQVTILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATL 850
Query: 362 RDEALNIFYVTDEMGNP-ADPKIIEAVRQKI 391
+ ++F++TD P +DP++ +++ I
Sbjct: 851 GERVEDVFFITDADNQPLSDPQLCSRLQEAI 881
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 44/80 (55%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P+V I N T++++ + R G+L ++ + ++ ++ A I++ G DVF +T
Sbjct: 802 PQVTILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFIT 861
Query: 83 DLNGNKLTDESVISYIEQSL 102
D + L+D + S +++++
Sbjct: 862 DADNQPLSDPQLCSRLQEAI 881
>sp|Q02RD0|GLND_PSEAB [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=glnD PE=3 SV=1
Length = 900
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 33/203 (16%)
Query: 22 TPRVVIDNAV---CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFMD 77
TP V+I + + + + +A +H V + LNL I+ A I+S +F +D
Sbjct: 688 TPLVLIKETTQREFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLD 747
Query: 78 VFHVTDLNGNKL-TDESVISYIEQSL--------------------ETIHYG-------R 109
+ V D +G+ + + I+ I + L + H+
Sbjct: 748 TYIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFAFAPQVTIS 807
Query: 110 SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGS 169
+++ ++ LE+ DR GLL+ + + D SV AK+ T R+ + Y+ D +
Sbjct: 808 TDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDARN-Q 866
Query: 170 PIEDSQQIDRIEARLRNVLKGDN 192
P+ D R++A L L DN
Sbjct: 867 PLADPDLCKRLQAALVEQLSQDN 889
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 37/194 (19%)
Query: 227 VLRHSTD-YPVVTVQNWADRSY---SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINT 282
+L+H D P+V ++ R + S + + D+ V + + + A I T
Sbjct: 680 ILQHPDDGTPLVLIKETTQREFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIIT 739
Query: 283 AGERAYLEFYI-RHIDGTPISSEPER-----QRVIQCLE------AAVGRRASEGVR--- 327
+ + L+ YI DG I + PER + +I L+ + RR ++
Sbjct: 740 STSQFTLDTYIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFA 799
Query: 328 -----------------LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFY 370
LE+ DR GLLA + F + L+V A+++T + ++FY
Sbjct: 800 FAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFY 859
Query: 371 VTDEMGNP-ADPKI 383
+TD P ADP +
Sbjct: 860 ITDARNQPLADPDL 873
Score = 40.0 bits (92), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 23/191 (12%)
Query: 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIY-VKDCNSGSPI 171
F + + + D+ + A + L S+ +A++ T + Y V D + S
Sbjct: 701 FESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSIG 760
Query: 172 EDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHS 231
+ ++I I L + LK +D T +RR+ + L+H
Sbjct: 761 NNPERIAEIREGLIDALKNPDDY----------PTIIQRRVPRQ------------LKHF 798
Query: 232 TDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEF 291
P VT+ A R SV+ V DR LL + D + V +A I T GER F
Sbjct: 799 AFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVF 858
Query: 292 YIRHIDGTPIS 302
YI P++
Sbjct: 859 YITDARNQPLA 869
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 36/205 (17%)
Query: 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLI-----YVKDCNSG 168
G+T L + D LLS + A ++V+A+++T +GR I Y +D + G
Sbjct: 737 GVTELTIFAADHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTISISREYDRDEDEG 796
Query: 169 SPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVL 228
++ RI + +VL+G +R ++ V R R V+
Sbjct: 797 ------RRATRIGEMIEDVLEGK--LRLPEVVARRTV--------------RSKARPFVI 834
Query: 229 RHSTDYPVVTVQN-WADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA 287
P VT+ N W+DR Y+V+ V DR LL+++ ++ + + A + T GERA
Sbjct: 835 E-----PEVTINNQWSDR-YTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERA 888
Query: 288 YLEFYIRHIDGTPISSEPERQRVIQ 312
FY+ + G I++ P RQ I+
Sbjct: 889 RDVFYVTDLLGAQINA-PTRQSAIK 912
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V I+N T+++V R G+L E ++ LNL I A++++ G DVF+VT
Sbjct: 836 PEVTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 895
Query: 83 DLNGNKLTDESVISYIEQSLETIHYG 108
DL G ++ + S I+ +L + G
Sbjct: 896 DLLGAQINAPTRQSAIKSALTHVMAG 921
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMG 376
+E+ DR GLL ++T + LN+ A V+T + A ++FYVTD +G
Sbjct: 851 IEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLG 899
>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=glnD PE=3 SV=1
Length = 931
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 48/80 (60%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P+V+++N T+++V R G+L + ++ LNL I A++++ G DVF+VT
Sbjct: 837 PKVIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVT 896
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G ++T + + I+++L
Sbjct: 897 DLLGARITAPTRQAAIKRAL 916
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 39/207 (18%)
Query: 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDS 174
G+T L + D LLS + A ++V+A+++T D + I S
Sbjct: 737 GVTELTIFAADHPWLLSIIAGACASAGANIVDAQIYT----------TTDGQALDTIAIS 786
Query: 175 QQIDRIE------ARLRNVLKG--DNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMP 226
++ DR E AR+ +++ D +R + A T
Sbjct: 787 REYDRDEDEGRRAARIGEIIEQVIDGRLRLPDVVARRAAGKTR----------------- 829
Query: 227 VLRHSTDYPVVTVQN-WADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGE 285
LR P V V N W+DR ++V+ V DR LLF + ++ + + A + T GE
Sbjct: 830 -LRPFVVEPKVIVNNQWSDR-HTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGE 887
Query: 286 RAYLEFYIRHIDGTPISSEPERQRVIQ 312
RA FY+ + G I++ P RQ I+
Sbjct: 888 RARDVFYVTDLLGARITA-PTRQAAIK 913
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAV 387
+E+ DR GLL +T + LN+ A V+T + A ++FYVTD +G +I
Sbjct: 852 IEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTDLLG----ARITAPT 907
Query: 388 RQKIGLSNLKVKELPMIYHQKGESEEQTVG 417
RQ +K + G + EQ+VG
Sbjct: 908 RQA------AIKRALIHLLANGGAAEQSVG 931
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P+V I+N T+++V R G+L + ++ LNL I A++++ G DVF+VT
Sbjct: 835 PKVTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVT 894
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G ++T + + I+++L
Sbjct: 895 DLLGARITAPTRQAAIKRAL 914
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 90/200 (45%), Gaps = 26/200 (13%)
Query: 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDS 174
G+T L + D LLS + A ++V+A+++T D + I S
Sbjct: 736 GVTELTILAADHPWLLSIIAGACASAGANIVDAQIYT----------TTDGQALDTIAIS 785
Query: 175 QQIDRIEARLRNVLKGDNDIRSAKMT-VSMAVTHTERRLHQMMFADRDYERMPVLRHSTD 233
++ +R E D R+A++ + V RL +M + +R LR
Sbjct: 786 REYERDE---------DEGRRAARIAEIIEQVLEGRLRLPDVMPSRAAGKR---LRPFVV 833
Query: 234 YPVVTVQN-WADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFY 292
P VT+ N W+DR ++++ V DR LLF + ++ + + A + T GERA FY
Sbjct: 834 EPKVTINNQWSDR-HTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFY 892
Query: 293 IRHIDGTPISSEPERQRVIQ 312
+ + G I++ P RQ I+
Sbjct: 893 VTDLLGARITA-PTRQAAIK 911
Score = 37.0 bits (84), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMG 376
+E+ DR GLL +T + LN+ A V+T + A ++FYVTD +G
Sbjct: 850 IEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVTDLLG 898
>sp|B1JBR2|GLND_PSEPW [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
W619) GN=glnD PE=3 SV=1
Length = 900
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 93/217 (42%), Gaps = 29/217 (13%)
Query: 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIE 172
F G T + + D+ + A ++ L ++ +A++ T + + Y+ N G I
Sbjct: 701 FEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIG 760
Query: 173 DS-QQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHS 231
D+ Q++ +I L L+ D T +RR+ + L+H
Sbjct: 761 DNPQRVKQIRDGLTEALRNPEDY----------PTIIQRRVPRQ------------LKHF 798
Query: 232 TDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEF 291
P VT+ N A R+ +++ + DR LL + + + + +A I T GER F
Sbjct: 799 NFPPQVTILNDAQRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVF 858
Query: 292 YIRHIDGTPISSEPE-----RQRVIQCLEAAVGRRAS 323
+I D P+ S+P+ ++ ++Q L+A AS
Sbjct: 859 FITDADNQPL-SDPQLCSRLQEAIVQQLQAGQASDAS 894
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNP-ADPKIIEA 386
LE+ DR GLLA + R F E L++ A+++T + ++F++TD P +DP++
Sbjct: 817 LEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876
Query: 387 VRQKI 391
+++ I
Sbjct: 877 LQEAI 881
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 44/80 (55%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P+V I N T++++ + R G+L ++ + +L ++ A I++ G DVF +T
Sbjct: 802 PQVTILNDAQRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFIT 861
Query: 83 DLNGNKLTDESVISYIEQSL 102
D + L+D + S +++++
Sbjct: 862 DADNQPLSDPQLCSRLQEAI 881
>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=glnD PE=3 SV=1
Length = 930
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 27/198 (13%)
Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEA 182
D G+ S + LA + +VV+A+ +T +G ++ +++D + GSP E S+ + R+ +
Sbjct: 748 ADHPGIFSRLAGALALVGANVVDARTYTTKDGYATAVFWIQD-SEGSPYEISR-LPRLTS 805
Query: 183 RLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDY--ERMPVLRHSTDYPVVTVQ 240
+ LKG+ R A DRD +R R T +
Sbjct: 806 MIDKTLKGEVVAREA-------------------LKDRDKLKKREAQFRFPTH---IAFD 843
Query: 241 NWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTP 300
N Y+++ V +DR LL+D+ TL + A I T G + FY++ + G
Sbjct: 844 NEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYVKDMFGLK 903
Query: 301 ISSEPERQRVIQCLEAAV 318
+ + ++ + + L A+
Sbjct: 904 LHQKNRQETLEKKLRQAI 921
Score = 40.4 bits (93), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 25 VVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDL 84
+ DN T+++VD+ R G+L + + L N+ I A I++ G +D F+V D+
Sbjct: 840 IAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYVKDM 899
Query: 85 NGNKLTDESVISYIEQSL 102
G KL ++ +E+ L
Sbjct: 900 FGLKLHQKNRQETLEKKL 917
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMG 376
+E+ DR GLL D+TRT N + + A ++T + ++ FYV D G
Sbjct: 853 IEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYVKDMFG 901
>sp|Q5LWE5|GLND_RUEPO [Protein-PII] uridylyltransferase OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=glnD PE=3 SV=1
Length = 908
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 24/191 (12%)
Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEA 182
D G+ S + LA + +VV+A+ +T +G + +++D G P E + ++ R+
Sbjct: 725 ADHPGIFSRMAGALALVGANVVDARSYTTKDGYVTDAFWIQDAE-GHPYE-AARLPRLSQ 782
Query: 183 RLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNW 242
+ LKG+ R A + D+ +R T +T N
Sbjct: 783 MILKTLKGEVVARDA-----------------LKSRDKIKKREKAFNVPTH---ITFDNE 822
Query: 243 ADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPIS 302
Y+++ V +DR LL+D+ L + +A I T GE+ FY++ + G
Sbjct: 823 GSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIATYGEQVVDSFYVKDMFGLKYH 882
Query: 303 SEPERQRVIQC 313
SE +QR ++
Sbjct: 883 SEA-KQRTLET 892
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 11 DEYEKLVIRMNTP-RVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS 69
D+ +K N P + DN T+++VD+ R G+L + + L N+ I A I+
Sbjct: 802 DKIKKREKAFNVPTHITFDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIA 861
Query: 70 SDGRFFMDVFHVTDLNGNKLTDESVISYIEQSL 102
+ G +D F+V D+ G K E+ +E L
Sbjct: 862 TYGEQVVDSFYVKDMFGLKYHSEAKQRTLETKL 894
>sp|A5W852|GLND_PSEP1 [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain F1
/ ATCC 700007) GN=glnD PE=3 SV=1
Length = 900
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 93/218 (42%), Gaps = 29/218 (13%)
Query: 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIE 172
F G T + + D+ + A ++ L ++ +A++ T + + Y+ N G I
Sbjct: 701 FEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIG 760
Query: 173 DS-QQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHS 231
D+ Q++ +I L L+ D T +RR+ + L+H
Sbjct: 761 DNPQRVKQIRDGLTEALRNPEDY----------PTIIQRRVPRQ------------LKHF 798
Query: 232 TDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEF 291
P VT+ N A R +++ + DR LL + + + + +A I T GER F
Sbjct: 799 DFPPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVF 858
Query: 292 YIRHIDGTPISSEPE-----RQRVIQCLEAAVGRRASE 324
+I D P+ S+P+ ++ ++Q L+A G S+
Sbjct: 859 FITDADNQPL-SDPQLCSRLQEAIVQQLQAGQGSDTSQ 895
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNP-ADPKIIEA 386
LE+ DR GLLA + R F E L++ A+++T + ++F++TD P +DP++
Sbjct: 817 LEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876
Query: 387 VRQKI 391
+++ I
Sbjct: 877 LQEAI 881
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 44/80 (55%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P+V I N T++++ + R G+L ++ + +L ++ A I++ G DVF +T
Sbjct: 802 PQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFIT 861
Query: 83 DLNGNKLTDESVISYIEQSL 102
D + L+D + S +++++
Sbjct: 862 DADNQPLSDPQLCSRLQEAI 881
>sp|Q88MI2|GLND_PSEPK [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
KT2440) GN=glnD PE=3 SV=1
Length = 900
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 93/218 (42%), Gaps = 29/218 (13%)
Query: 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIE 172
F G T + + D+ + A ++ L ++ +A++ T + + Y+ N G I
Sbjct: 701 FEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIG 760
Query: 173 DS-QQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHS 231
D+ Q++ +I L L+ D T +RR+ + L+H
Sbjct: 761 DNPQRVKQIRDGLTEALRNPEDY----------PTIIQRRVPRQ------------LKHF 798
Query: 232 TDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEF 291
P VT+ N A R +++ + DR LL + + + + +A I T GER F
Sbjct: 799 DFPPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVF 858
Query: 292 YIRHIDGTPISSEPE-----RQRVIQCLEAAVGRRASE 324
+I D P+ S+P+ ++ ++Q L+A G S+
Sbjct: 859 FITDADNQPL-SDPQLCSRLQEAIVQQLQAGQGSDTSQ 895
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNP-ADPKIIEA 386
LE+ DR GLLA + R F E L++ A+++T + ++F++TD P +DP++
Sbjct: 817 LEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876
Query: 387 VRQKI 391
+++ I
Sbjct: 877 LQEAI 881
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 44/80 (55%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P+V I N T++++ + R G+L ++ + +L ++ A I++ G DVF +T
Sbjct: 802 PQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFIT 861
Query: 83 DLNGNKLTDESVISYIEQSL 102
D + L+D + S +++++
Sbjct: 862 DADNQPLSDPQLCSRLQEAI 881
>sp|A4VJR9|GLND_PSEU5 [Protein-PII] uridylyltransferase OS=Pseudomonas stutzeri (strain
A1501) GN=glnD PE=3 SV=1
Length = 900
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 23/191 (12%)
Query: 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPI- 171
F G T + + D+ + A + L ++ +A++ T + + Y+ GSPI
Sbjct: 701 FEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARILTSSSQFTLDTYIVLEADGSPIG 760
Query: 172 EDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHS 231
+ ++I+ I + L L+ +D +T +RR+ + L+H
Sbjct: 761 NNPERIEEIRSGLIAALRNPDDY----------LTIIQRRVPRQ------------LKHF 798
Query: 232 TDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEF 291
P VT+ N R +++ + DR LL V D + V +A I T GER F
Sbjct: 799 AFPPQVTIHNDTQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVF 858
Query: 292 YIRHIDGTPIS 302
++ D P+S
Sbjct: 859 FVTDADNQPLS 869
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 93/216 (43%), Gaps = 48/216 (22%)
Query: 235 PVVTVQNWADRSY---SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEF 291
P+V ++ R + + + + D+ V + + + A I T+ + L+
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARILTSSSQFTLDT 748
Query: 292 YI-RHIDGTPISSEPER-QRVIQCLEAA----------VGRRASEGVR------------ 327
YI DG+PI + PER + + L AA + RR ++
Sbjct: 749 YIVLEADGSPIGNNPERIEEIRSGLIAALRNPDDYLTIIQRRVPRQLKHFAFPPQVTIHN 808
Query: 328 --------LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNP- 378
LE+ DR GLLA V + F + L+V A+++T + ++F+VTD P
Sbjct: 809 DTQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFVTDADNQPL 868
Query: 379 ADPKIIEAVRQKIGLSNLKVKELPMIYHQKGESEEQ 414
+DP++ ++Q I +KEL + E+E+Q
Sbjct: 869 SDPQLCLRLQQAI------IKEL------QQENEQQ 892
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P+V I N T++++ + R G+L Q+ D +L ++ A I++ G DVF VT
Sbjct: 802 PQVTIHNDTQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFVT 861
Query: 83 DLNGNKLTDESVISYIEQSL 102
D + L+D + ++Q++
Sbjct: 862 DADNQPLSDPQLCLRLQQAI 881
>sp|B0KS97|GLND_PSEPG [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
GB-1) GN=glnD PE=3 SV=1
Length = 900
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 29/217 (13%)
Query: 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIE 172
F G T + + D+ + A ++ L ++ +A++ T + + Y+ N G I
Sbjct: 701 FEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIG 760
Query: 173 DS-QQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHS 231
D+ Q++ +I L L+ D T +RR+ + L+H
Sbjct: 761 DNPQRVKQIRDGLTEALRNPEDY----------PTIIQRRVPRQ------------LKHF 798
Query: 232 TDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEF 291
P VT+ N A R +++ + DR LL + + + + +A I T GER F
Sbjct: 799 DFPPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVF 858
Query: 292 YIRHIDGTPISSEPE-----RQRVIQCLEAAVGRRAS 323
+I D P+ S+P+ ++ ++Q L+A G S
Sbjct: 859 FITDADNQPL-SDPQLCSRLQEAIVQQLQAGQGSDTS 894
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNP-ADPKIIEA 386
LE+ DR GLLA + R F E L++ A+++T + ++F++TD P +DP++
Sbjct: 817 LEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876
Query: 387 VRQKI 391
+++ I
Sbjct: 877 LQEAI 881
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 44/80 (55%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P+V I N T++++ + R G+L ++ + +L ++ A I++ G DVF +T
Sbjct: 802 PQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFIT 861
Query: 83 DLNGNKLTDESVISYIEQSL 102
D + L+D + S +++++
Sbjct: 862 DADNQPLSDPQLCSRLQEAI 881
>sp|P36223|GLND_AZOVI [Protein-PII] uridylyltransferase OS=Azotobacter vinelandii GN=glnD
PE=3 SV=1
Length = 899
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 31/197 (15%)
Query: 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFMDVFHVTDLNGNKLTDES 93
AT + + + +H V + LNL I A I+S +F +D + V D +G + +
Sbjct: 704 ATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVITSTSQFTLDTYIVLDADGGSIGNNP 763
Query: 94 V-ISYIEQSL--------------------ETIHYG-------RSNSFNGLTALELTGTD 125
I I Q L + H+ ++++ +T LE+ D
Sbjct: 764 ARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKHFAFAPQVTIQNDALRPVTILEIIAPD 823
Query: 126 RVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLR 185
R GLL+ + + D S+ AK+ T R+ + +V D ++ P+ D + R++ +
Sbjct: 824 RPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTDAHN-QPLSDPELCARLQLAIA 882
Query: 186 NVLK-GDNDIRSAKMTV 201
L GD+ I+ +++++
Sbjct: 883 EQLADGDSYIQPSRISI 899
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 27/214 (12%)
Query: 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIY-VKDCNSGSPI 171
F G T + + D+ + A + L S+ +A+V T + Y V D + GS
Sbjct: 701 FEGATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVITSTSQFTLDTYIVLDADGGSIG 760
Query: 172 EDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHS 231
+ +I I L L+ D T +RR+ + L+H
Sbjct: 761 NNPARIQEIRQGLVEALRNPADY----------PTIIQRRVPRQ------------LKHF 798
Query: 232 TDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEF 291
P VT+QN A R +++ + DR LL + D + + +A I T GER F
Sbjct: 799 AFAPQVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVF 858
Query: 292 YIRHIDGTPISSEPERQRVIQCLEAAVGRRASEG 325
++ P+ S+PE + L+ A+ + ++G
Sbjct: 859 FVTDAHNQPL-SDPE---LCARLQLAIAEQLADG 888
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%)
Query: 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
P+V I N T++++ + R G+L ++ D +L ++ A I++ G DVF V
Sbjct: 801 APQVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFV 860
Query: 82 TDLNGNKLTDESVISYIEQSL 102
TD + L+D + + ++ ++
Sbjct: 861 TDAHNQPLSDPELCARLQLAI 881
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 37/194 (19%)
Query: 227 VLRH-STDYPVVTVQNWADRSY---SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINT 282
+L+H S+ P+V ++ R + + + + D+ V + + + A + T
Sbjct: 680 ILQHPSSGGPLVLIKETTQREFEGATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVIT 739
Query: 283 AGERAYLEFYI-RHIDGTPISSEPER-QRVIQCLEAA----------VGRRASEGVR--- 327
+ + L+ YI DG I + P R Q + Q L A + RR ++
Sbjct: 740 STSQFTLDTYIVLDADGGSIGNNPARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKHFA 799
Query: 328 -----------------LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFY 370
LE+ DR GLLA + + F + L++ A+++T + ++F+
Sbjct: 800 FAPQVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFF 859
Query: 371 VTDEMGNP-ADPKI 383
VTD P +DP++
Sbjct: 860 VTDAHNQPLSDPEL 873
>sp|C1DSU8|GLND_AZOVD [Protein-PII] uridylyltransferase OS=Azotobacter vinelandii (strain
DJ / ATCC BAA-1303) GN=glnD PE=3 SV=1
Length = 899
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 31/197 (15%)
Query: 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFMDVFHVTDLNGNKLTDES 93
AT + + + +H V + LNL I A I+S +F +D + V D +G + +
Sbjct: 704 ATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVITSTSQFTLDTYIVLDADGGSIGNNP 763
Query: 94 V-ISYIEQSL--------------------ETIHYG-------RSNSFNGLTALELTGTD 125
I I Q L + H+ ++++ +T LE+ D
Sbjct: 764 ARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKHFAFAPQVTIQNDALRPVTILEIIAPD 823
Query: 126 RVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLR 185
R GLL+ + + D S+ AK+ T R+ + +V D ++ P+ D + R++ +
Sbjct: 824 RPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTDAHN-QPLSDPELCARLQLAIA 882
Query: 186 NVLK-GDNDIRSAKMTV 201
L GD+ I+ +++++
Sbjct: 883 EQLADGDSYIQPSRISI 899
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 27/214 (12%)
Query: 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIY-VKDCNSGSPI 171
F G T + + D+ + A + L S+ +A+V T + Y V D + GS
Sbjct: 701 FEGATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVITSTSQFTLDTYIVLDADGGSIG 760
Query: 172 EDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHS 231
+ +I I L L+ D T +RR+ + L+H
Sbjct: 761 NNPARIQEIRQGLVEALRNPADY----------PTIIQRRVPRQ------------LKHF 798
Query: 232 TDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEF 291
P VT+QN A R +++ + DR LL + D + + +A I T GER F
Sbjct: 799 AFAPQVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVF 858
Query: 292 YIRHIDGTPISSEPERQRVIQCLEAAVGRRASEG 325
++ P+ S+PE + L+ A+ + ++G
Sbjct: 859 FVTDAHNQPL-SDPE---LCARLQLAIAEQLADG 888
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%)
Query: 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
P+V I N T++++ + R G+L ++ D +L ++ A I++ G DVF V
Sbjct: 801 APQVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFV 860
Query: 82 TDLNGNKLTDESVISYIEQSL 102
TD + L+D + + ++ ++
Sbjct: 861 TDAHNQPLSDPELCARLQLAI 881
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 37/194 (19%)
Query: 227 VLRH-STDYPVVTVQNWADRSY---SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINT 282
+L+H S+ P+V ++ R + + + + D+ V + + + A + T
Sbjct: 680 ILQHPSSGGPLVLIKETTQREFEGATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVIT 739
Query: 283 AGERAYLEFYI-RHIDGTPISSEPER-QRVIQCLEAA----------VGRRASEGVR--- 327
+ + L+ YI DG I + P R Q + Q L A + RR ++
Sbjct: 740 STSQFTLDTYIVLDADGGSIGNNPARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKHFA 799
Query: 328 -----------------LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFY 370
LE+ DR GLLA + + F + L++ A+++T + ++F+
Sbjct: 800 FAPQVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFF 859
Query: 371 VTDEMGNP-ADPKI 383
VTD P +DP++
Sbjct: 860 VTDAHNQPLSDPEL 873
>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1
Length = 931
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 33/205 (16%)
Query: 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLI-----YVKDCNSG 168
G+T L + D LLS + A ++V+A+++T +GR I Y +D + G
Sbjct: 737 GVTELTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTIAISREYERDEDEG 796
Query: 169 SPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVL 228
++ RI + VL+G ++ ++A T + H+ +
Sbjct: 797 ------RRATRIGETIEQVLEG-----KLRLPDAVARRTTRGKQHKAFSVE--------- 836
Query: 229 RHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAY 288
P V++ N Y+V+ V DR LL+++ ++ + + A + T GERA
Sbjct: 837 ------PEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERAR 890
Query: 289 LEFYIRHIDGTPISSEPERQRVIQC 313
FY+ + G I++ P RQ I+
Sbjct: 891 DVFYVTDLLGAQINA-PTRQAAIKS 914
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V I+N T+++V R G+L E ++ LNL I A++++ G DVF+VT
Sbjct: 837 PEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 896
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G ++ + + I+ +L
Sbjct: 897 DLLGAQINAPTRQAAIKSAL 916
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMG 376
+E+ DR GLL ++T + LN+ A V+T + A ++FYVTD +G
Sbjct: 852 IEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLG 900
>sp|P62223|GLND_RHOPA [Protein-PII] uridylyltransferase OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=glnD PE=3 SV=1
Length = 929
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 33/205 (16%)
Query: 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLI-----YVKDCNSG 168
+T L + D LLS + A ++V+A+++T +GR I Y +D + G
Sbjct: 733 AVTELTILAVDHPWLLSVIAGACASAGANIVDAQIYTTTDGRALDTISISREYDRDEDEG 792
Query: 169 SPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVL 228
++ RI + VL+G +R + A + ++ +L +
Sbjct: 793 ------RRATRIGETIEEVLEGK--LRLPEAVARRASSGSKAKLRAFVVE---------- 834
Query: 229 RHSTDYPVVTVQN-WADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA 287
P V + N W+DR Y+V+ V DR LL+ + ++ + + A + T GERA
Sbjct: 835 ------PEVEINNNWSDR-YTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERA 887
Query: 288 YLEFYIRHIDGTPISSEPERQRVIQ 312
FY+ + G I++ P RQ I+
Sbjct: 888 RDVFYVTDLLGAQITA-PTRQAAIK 911
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V I+N T+++V R G+L + ++ LNL I A++++ G DVF+VT
Sbjct: 835 PEVEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVT 894
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G ++T + + I+++L
Sbjct: 895 DLLGAQITAPTRQAAIKRAL 914
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMG 376
+E+ DR GLL +T + LN+ A V+T + A ++FYVTD +G
Sbjct: 850 IEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTDLLG 898
>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
ORS278) GN=glnD PE=3 SV=1
Length = 931
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 33/205 (16%)
Query: 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLI-----YVKDCNSG 168
G+T L + D LLS + A ++V+A+++T +GR I Y +D + G
Sbjct: 737 GVTELTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTIAISREYERDEDEG 796
Query: 169 SPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVL 228
++ RI + VL+G ++ ++A T + H+ +
Sbjct: 797 ------RRATRIGETIEQVLEG-----KLRLPDAVARRTTRGKQHKAFSVE--------- 836
Query: 229 RHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAY 288
P V++ N Y+V+ V DR LL+++ ++ + + A + T GERA
Sbjct: 837 ------PEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERAR 890
Query: 289 LEFYIRHIDGTPISSEPERQRVIQC 313
FY+ + G I++ P RQ I+
Sbjct: 891 DVFYVTDLLGAQINA-PTRQAAIKS 914
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V I+N T+++V R G+L E ++ LNL I A++++ G DVF+VT
Sbjct: 837 PEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 896
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G ++ + + I+ +L
Sbjct: 897 DLLGAQINAPTRQAAIKSAL 916
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMG 376
+E+ DR GLL ++T + LN+ A V+T + A ++FYVTD +G
Sbjct: 852 IEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLG 900
>sp|C3K5E4|GLND_PSEFS [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain SBW25) GN=glnD PE=3 SV=1
Length = 900
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 24/201 (11%)
Query: 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIE 172
F G T + + D+ + A + L ++ +A+V T + + Y+ G I
Sbjct: 701 FEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARVITSSSQFTLDTYIVLDTEGESIG 760
Query: 173 DSQ-QIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHS 231
D+ ++ +I L L+ +D T +RR+ + L+H
Sbjct: 761 DNPVRVKKIREGLTEALRNPDDY----------PTIIQRRVPRQ------------LKHF 798
Query: 232 TDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEF 291
P VT+ N A R +V+ + DR LL + + + + +A I T GER F
Sbjct: 799 AFAPQVTISNDAQRPVTVLELSAPDRPGLLARIGGIFLEFDLSLQNAKIATLGERVEDVF 858
Query: 292 YIRHIDGTPISSEPERQRVIQ 312
+I D P+ S+PE R +Q
Sbjct: 859 FITDADNQPL-SDPELCRRLQ 878
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNP-ADPKIIEA 386
LEL DR GLLA + F E L++ A+++T + ++F++TD P +DP++
Sbjct: 817 LELSAPDRPGLLARIGGIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPELCRR 876
Query: 387 VRQKIGLSNLKVKELPMI 404
++ I + L V + P +
Sbjct: 877 LQDAI-VQQLSVTQEPGV 893
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 41/81 (50%)
Query: 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
P+V I N T++++ + R G+L + + +L ++ A I++ G DVF +
Sbjct: 801 APQVTISNDAQRPVTVLELSAPDRPGLLARIGGIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 82 TDLNGNKLTDESVISYIEQSL 102
TD + L+D + ++ ++
Sbjct: 861 TDADNQPLSDPELCRRLQDAI 881
>sp|A4XWU3|GLND_PSEMY [Protein-PII] uridylyltransferase OS=Pseudomonas mendocina (strain
ymp) GN=glnD PE=3 SV=1
Length = 899
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 36/179 (20%)
Query: 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFMDVFHVTDLNGNKLTD-- 91
T + + + +H V ++ LNL I A I+S +F +D + V D +G + D
Sbjct: 704 GTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSTSQFTLDTYVVLDADGGSIGDNP 763
Query: 92 -------ESVISYIEQSLE----------------------TIHYGRSNSFNGLTALELT 122
E +I ++ E TIH +++ +T LELT
Sbjct: 764 ARIKQIREGLIEALKNPDEYPTIIQRRVPRQLKHFAFAPQVTIH---NDAQRPVTILELT 820
Query: 123 GTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIE 181
DR GLL+ + + + S+ AK+ T R+ + +V D N+ P+ D + R++
Sbjct: 821 APDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFVTDANN-QPLSDPELCARLQ 878
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 37/202 (18%)
Query: 227 VLRHSTDY-PVVTVQNWADRSY---SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINT 282
+L+H D P+V ++ R + + + + D+ V ++ + + A I T
Sbjct: 680 ILQHPADSGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIIT 739
Query: 283 AGERAYLEFYI-RHIDGTPISSEPERQRVIQ--CLEA---------AVGRRASEGVR--- 327
+ + L+ Y+ DG I P R + I+ +EA + RR ++
Sbjct: 740 STSQFTLDTYVVLDADGGSIGDNPARIKQIREGLIEALKNPDEYPTIIQRRVPRQLKHFA 799
Query: 328 -----------------LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFY 370
LEL DR GLLA + R F E L++ A+++T + ++F+
Sbjct: 800 FAPQVTIHNDAQRPVTILELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFF 859
Query: 371 VTDEMGNP-ADPKIIEAVRQKI 391
VTD P +DP++ +++ I
Sbjct: 860 VTDANNQPLSDPELCARLQETI 881
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 11 DEYEKLVIR---------MNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNL 61
DEY ++ R P+V I N T++++ + R G+L ++ + +L
Sbjct: 781 DEYPTIIQRRVPRQLKHFAFAPQVTIHNDAQRPVTILELTAPDRPGLLARIGRIFLEYDL 840
Query: 62 LIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSL 102
++ A I++ G DVF VTD N L+D + + +++++
Sbjct: 841 SLQNAKIATLGERVEDVFFVTDANNQPLSDPELCARLQETI 881
>sp|Q5NPH0|GLND_ZYMMO [Protein-PII] uridylyltransferase OS=Zymomonas mobilis subsp.
mobilis (strain ATCC 31821 / ZM4 / CP4) GN=glnD PE=3
SV=1
Length = 926
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V IDN T+++V++ R +L + L + L I A+I++ G +DVF+V+
Sbjct: 835 PLVFIDNQASDRFTVIEVNAQDRPALLHDLGCALFNARLTISSAHIATYGERAVDVFYVS 894
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL +K+T+++ + IE+ L
Sbjct: 895 DLFSHKITNQNRLKAIEKRL 914
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 32/221 (14%)
Query: 94 VISYIEQSLETIHYGRSNSFNG-------LTALELTGTDRVGLLSEVFAVLADLQCSVVE 146
+ + ++Q ++T G+S S G T + L D G + + ++++
Sbjct: 706 IAANMQQIIDTDSKGQSISVRGHEMPAYDATMISLYAIDHPGFFYRISGAIHATGGNILD 765
Query: 147 AKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVT 206
A++ T +A + + G I+ + ++R+ + + + IRS+ ++
Sbjct: 766 ARIHTTRDGMAMDNLLVQNSQGGMIKSGEHLNRMMQAIEDA--ATSHIRSSNKLAAL--- 820
Query: 207 HTERRLHQMMFADRDYERMPVLRHSTDY---PVVTVQNWADRSYSVVNVQCKDRTKLLFD 263
R P+ + P+V + N A ++V+ V +DR LL D
Sbjct: 821 -----------------RPPLFWRGKAFHVEPLVFIDNQASDRFTVIEVNAQDRPALLHD 863
Query: 264 VVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSE 304
+ C L + + A I T GERA FY+ + I+++
Sbjct: 864 LGCALFNARLTISSAHIATYGERAVDVFYVSDLFSHKITNQ 904
>sp|Q4KHH8|GLND_PSEF5 [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain Pf-5 / ATCC BAA-477) GN=glnD PE=3 SV=1
Length = 900
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 79/191 (41%), Gaps = 23/191 (12%)
Query: 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPI- 171
F G T + + D+ + A + L ++ +A++ T + + Y+ N G I
Sbjct: 701 FEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDNDGESIG 760
Query: 172 EDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHS 231
+ Q++++I L + L+ +D T +RR+ + L+H
Sbjct: 761 NNPQRVEQIRKGLTDALRNPDDY----------PTIIQRRVPRQ------------LKHF 798
Query: 232 TDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEF 291
P VT+ N A R +V+ + DR LL + + + + +A I T GER F
Sbjct: 799 AFAPEVTIHNDAQRPVTVLELSAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVF 858
Query: 292 YIRHIDGTPIS 302
+I P+S
Sbjct: 859 FITDAHNQPLS 869
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNP-ADPKIIEA 386
LEL DR GLLA + + F E L++ A+++T + ++F++TD P +DP++
Sbjct: 817 LELSAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDAHNQPLSDPQLCSR 876
Query: 387 VRQKIGLSNLKVKELPMI 404
++ I + L V P I
Sbjct: 877 LQDAI-VEQLSVSHEPTI 893
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 42/81 (51%)
Query: 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
P V I N T++++ + R G+L ++ + +L ++ A I++ G DVF +
Sbjct: 801 APEVTIHNDAQRPVTVLELSAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 82 TDLNGNKLTDESVISYIEQSL 102
TD + L+D + S ++ ++
Sbjct: 861 TDAHNQPLSDPQLCSRLQDAI 881
>sp|A5UBF9|GLND_HAEIE [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
PittEE) GN=glnD PE=3 SV=1
Length = 863
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 28/167 (16%)
Query: 250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGE-RAYLEFYIRHIDG---------- 298
V + C+D+ L VV T+ ++ + A I T + + F I ++G
Sbjct: 689 VFIYCQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFDRRRE 748
Query: 299 --------------TPISSEPERQR---VIQCLEAAVGRRASEGVRLELCMEDRQGLLAD 341
+ +S P RQ +Q + E +EL D+ GLLA
Sbjct: 749 LEQALTLALQSEKLSALSITPNRQLQHFTVQTDVRFLHENKKEHTEMELVALDKAGLLAQ 808
Query: 342 VTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVR 388
V++ F E LN+ A+++T ++A + F +T++ G D + E +R
Sbjct: 809 VSQIFSELNLNLLNAKITTVGEKAEDFFILTNQFGQALDSQQREILR 855
Score = 33.1 bits (74), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQ 176
T +EL D+ GLL++V + ++L +++ AK+ T G A ++ G + DSQQ
Sbjct: 793 TEMELVALDKAGLLAQVSQIFSELNLNLLNAKI-TTVGEKAEDFFILTNQFGQAL-DSQQ 850
Query: 177 IDRIEARLRNVL 188
LRNVL
Sbjct: 851 ----REILRNVL 858
>sp|A7MGS0|GLND_CROS8 [Protein-PII] uridylyltransferase OS=Cronobacter sakazakii (strain
ATCC BAA-894) GN=glnD PE=3 SV=1
Length = 892
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 39/199 (19%)
Query: 227 VLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFH--ATINTAG 284
+LRH P++ + A R + + + DR LF VC D + H T
Sbjct: 689 LLRHDLSKPLILLSPQATRGGTEIFIWSPDR-PYLFAAVCAELDRRNLSVHDAQIFTTRD 747
Query: 285 ERAYLEFYIRHIDGTPISSEPERQRVIQ-CLEAAVGRRASEGVR---------------- 327
+ A F + DG+P+S P+R I+ LE A+ +R + +
Sbjct: 748 DMAMDTFIVLEPDGSPLS--PDRHEAIRHGLEQAITQRTWQPPQPRRQPAKLRHFTVETE 805
Query: 328 -------------LELCMEDRQGLLADVTRTFRENGLNVTRAEVST--ERDEALNIFYVT 372
LEL D+ GLLA V + F + G+++ A +ST ER E L I
Sbjct: 806 VNFLPTHTDRKSFLELIALDQPGLLARVGQVFADLGISLHGARISTIGERVEDLFIIATA 865
Query: 373 DEMGNPADPKIIEAVRQKI 391
D G + + + VRQ++
Sbjct: 866 DRRG--LNNLLQQEVRQRL 882
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,861,911
Number of Sequences: 539616
Number of extensions: 6178184
Number of successful extensions: 16991
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 16457
Number of HSP's gapped (non-prelim): 528
length of query: 444
length of database: 191,569,459
effective HSP length: 121
effective length of query: 323
effective length of database: 126,275,923
effective search space: 40787123129
effective search space used: 40787123129
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)