Query 013389
Match_columns 444
No_of_seqs 382 out of 2116
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:21:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01759 glnD PII uridylyl-tra 100.0 1.9E-27 4.1E-32 265.3 23.6 163 232-395 662-853 (854)
2 PRK05007 PII uridylyl-transfer 100.0 1.9E-27 4.1E-32 266.1 23.7 162 233-395 687-878 (884)
3 PRK01759 glnD PII uridylyl-tra 100.0 4.6E-27 9.9E-32 262.2 23.9 181 111-318 672-853 (854)
4 PRK05007 PII uridylyl-transfer 99.9 2.1E-26 4.6E-31 257.7 24.6 183 111-319 696-879 (884)
5 PRK00275 glnD PII uridylyl-tra 99.9 3.6E-26 7.7E-31 256.0 25.5 184 114-320 702-887 (895)
6 PRK04374 PII uridylyl-transfer 99.9 5.2E-25 1.1E-29 245.3 24.7 181 112-319 686-867 (869)
7 TIGR01693 UTase_glnD [Protein- 99.9 6.9E-25 1.5E-29 245.9 24.2 184 113-318 665-849 (850)
8 PRK00275 glnD PII uridylyl-tra 99.9 2.1E-24 4.5E-29 241.8 26.2 177 13-190 676-887 (895)
9 TIGR01693 UTase_glnD [Protein- 99.9 1.2E-24 2.6E-29 243.9 23.5 163 233-395 654-849 (850)
10 PRK03059 PII uridylyl-transfer 99.9 2.8E-24 6.2E-29 239.7 25.0 182 111-319 673-855 (856)
11 PRK05092 PII uridylyl-transfer 99.9 5.1E-24 1.1E-28 240.5 26.0 188 112-320 728-916 (931)
12 PRK03381 PII uridylyl-transfer 99.9 4.8E-24 1E-28 235.9 24.0 177 114-315 597-773 (774)
13 COG2844 GlnD UTP:GlnB (protein 99.9 1.8E-23 3.8E-28 222.8 20.1 166 232-398 669-864 (867)
14 PRK04374 PII uridylyl-transfer 99.9 4.9E-23 1.1E-27 229.5 24.0 160 234-396 676-867 (869)
15 PRK03059 PII uridylyl-transfer 99.9 1.4E-22 3E-27 226.3 25.2 163 22-189 665-855 (856)
16 PRK05092 PII uridylyl-transfer 99.9 1.8E-22 3.9E-27 228.0 26.4 178 13-191 706-917 (931)
17 COG2844 GlnD UTP:GlnB (protein 99.9 4.2E-23 9.2E-28 219.9 19.5 182 111-318 679-861 (867)
18 PRK03381 PII uridylyl-transfer 99.9 7.5E-23 1.6E-27 226.4 21.2 154 233-392 586-773 (774)
19 cd04897 ACT_ACR_3 ACT domain-c 99.8 1.3E-20 2.9E-25 148.1 11.2 75 247-321 1-75 (75)
20 cd04895 ACT_ACR_1 ACT domain-c 99.8 4.5E-19 9.7E-24 138.4 10.1 68 326-393 2-70 (72)
21 cd04897 ACT_ACR_3 ACT domain-c 99.8 9.3E-19 2E-23 137.6 10.0 70 326-395 2-72 (75)
22 cd04896 ACT_ACR-like_3 ACT dom 99.7 1.3E-17 2.9E-22 131.1 9.7 70 326-396 1-73 (75)
23 cd04895 ACT_ACR_1 ACT domain-c 99.7 6.4E-17 1.4E-21 126.3 10.5 70 247-316 1-70 (72)
24 PRK11589 gcvR glycine cleavage 99.7 6E-16 1.3E-20 143.5 13.2 143 244-394 5-165 (190)
25 cd04896 ACT_ACR-like_3 ACT dom 99.7 4.8E-16 1E-20 122.3 10.7 72 248-320 1-74 (75)
26 cd04925 ACT_ACR_2 ACT domain-c 99.6 1.4E-15 3.1E-20 120.1 11.2 74 117-190 1-74 (74)
27 cd04900 ACT_UUR-like_1 ACT dom 99.6 3.4E-15 7.3E-20 117.5 10.8 72 116-188 1-73 (73)
28 PRK11589 gcvR glycine cleavage 99.6 2.2E-14 4.8E-19 133.1 14.8 144 32-189 5-167 (190)
29 cd04925 ACT_ACR_2 ACT domain-c 99.6 1.3E-14 2.9E-19 114.5 10.8 72 248-319 1-73 (74)
30 cd04900 ACT_UUR-like_1 ACT dom 99.6 2E-14 4.2E-19 113.2 10.6 72 247-318 1-73 (73)
31 cd04927 ACT_ACR-like_2 Second 99.5 5.6E-14 1.2E-18 111.5 11.2 71 118-190 2-73 (76)
32 cd04927 ACT_ACR-like_2 Second 99.5 7.5E-14 1.6E-18 110.8 11.0 70 249-319 2-72 (76)
33 COG2716 GcvR Glycine cleavage 99.5 8.7E-14 1.9E-18 124.0 9.0 144 244-395 2-163 (176)
34 cd04926 ACT_ACR_4 C-terminal 99.4 3.3E-12 7.2E-17 100.3 10.5 72 325-396 1-72 (72)
35 cd04926 ACT_ACR_4 C-terminal 99.3 1.3E-11 2.9E-16 96.8 10.5 68 116-185 1-68 (72)
36 COG2716 GcvR Glycine cleavage 99.3 6.4E-12 1.4E-16 112.2 9.2 146 32-187 2-162 (176)
37 cd04928 ACT_TyrKc Uncharacteri 99.3 1.9E-11 4.1E-16 94.4 9.8 65 248-318 2-67 (68)
38 cd04928 ACT_TyrKc Uncharacteri 99.3 3.6E-11 7.8E-16 92.8 9.8 52 36-87 2-54 (68)
39 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 7E-11 1.5E-15 91.5 10.6 70 117-188 1-70 (70)
40 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 1.2E-10 2.6E-15 90.2 10.4 70 248-318 1-70 (70)
41 PRK00227 glnD PII uridylyl-tra 99.2 1.2E-10 2.6E-15 127.0 14.1 116 248-372 547-674 (693)
42 PRK00227 glnD PII uridylyl-tra 99.1 5.7E-10 1.2E-14 121.8 14.5 141 36-190 547-692 (693)
43 cd04873 ACT_UUR-ACR-like ACT d 98.9 1.3E-08 2.9E-13 78.2 10.6 70 117-188 1-70 (70)
44 cd04873 ACT_UUR-ACR-like ACT d 98.9 1.4E-08 3.1E-13 78.1 10.4 69 248-317 1-69 (70)
45 cd04894 ACT_ACR-like_1 ACT dom 98.7 4.4E-08 9.6E-13 72.8 7.2 60 36-95 1-60 (69)
46 PF13740 ACT_6: ACT domain; PD 98.6 3.6E-07 7.8E-12 72.4 10.0 66 116-189 2-67 (76)
47 PF13740 ACT_6: ACT domain; PD 98.6 5.6E-07 1.2E-11 71.3 9.8 64 35-105 2-65 (76)
48 COG4747 ACT domain-containing 98.6 1.4E-06 3.1E-11 73.2 12.3 114 36-164 4-118 (142)
49 cd04893 ACT_GcvR_1 ACT domains 98.4 1.4E-06 3.1E-11 69.1 8.4 48 36-83 2-49 (77)
50 PF01842 ACT: ACT domain; Int 98.4 1.9E-06 4.1E-11 65.3 8.8 49 36-84 1-51 (66)
51 PF01842 ACT: ACT domain; Int 98.4 3.5E-06 7.6E-11 63.8 10.0 62 117-187 1-64 (66)
52 cd04893 ACT_GcvR_1 ACT domains 98.3 4.3E-06 9.3E-11 66.4 9.0 62 248-316 2-63 (77)
53 cd04894 ACT_ACR-like_1 ACT dom 98.3 3.4E-06 7.3E-11 62.9 7.2 66 248-316 1-66 (69)
54 cd04870 ACT_PSP_1 CT domains f 98.3 3.9E-06 8.5E-11 66.1 8.0 63 249-317 1-63 (75)
55 cd04870 ACT_PSP_1 CT domains f 98.3 3E-06 6.6E-11 66.8 7.3 49 328-376 2-50 (75)
56 COG4747 ACT domain-containing 98.0 0.00013 2.9E-09 61.5 12.6 126 249-396 5-131 (142)
57 PRK07431 aspartate kinase; Pro 98.0 0.0047 1E-07 67.4 28.3 287 42-391 278-580 (587)
58 cd04875 ACT_F4HF-DF N-terminal 98.0 9.8E-06 2.1E-10 63.5 5.4 65 327-393 1-65 (74)
59 cd04872 ACT_1ZPV ACT domain pr 98.0 2.4E-05 5.2E-10 63.6 6.8 47 326-372 2-48 (88)
60 cd04872 ACT_1ZPV ACT domain pr 98.0 2.7E-05 5.8E-10 63.3 7.1 63 248-316 2-65 (88)
61 cd04869 ACT_GcvR_2 ACT domains 97.9 2.3E-05 4.9E-10 62.3 6.3 65 328-393 2-68 (81)
62 PRK00194 hypothetical protein; 97.9 2.7E-05 5.9E-10 63.4 6.8 66 116-187 3-68 (90)
63 cd04869 ACT_GcvR_2 ACT domains 97.9 7.5E-05 1.6E-09 59.2 8.6 62 249-316 1-68 (81)
64 PRK00194 hypothetical protein; 97.9 4E-05 8.6E-10 62.4 6.9 43 325-367 3-45 (90)
65 cd04875 ACT_F4HF-DF N-terminal 97.9 8.9E-05 1.9E-09 58.1 8.5 35 249-283 1-35 (74)
66 PF13291 ACT_4: ACT domain; PD 97.8 0.0002 4.3E-09 56.9 8.9 64 116-186 6-71 (80)
67 TIGR00655 PurU formyltetrahydr 97.7 0.00093 2E-08 66.1 14.6 114 37-151 2-119 (280)
68 PRK13010 purU formyltetrahydro 97.7 0.00088 1.9E-08 66.5 13.7 116 34-151 8-128 (289)
69 PF13291 ACT_4: ACT domain; PD 97.5 0.0008 1.7E-08 53.3 9.4 63 247-315 6-70 (80)
70 PRK13010 purU formyltetrahydro 97.5 0.0019 4.1E-08 64.1 14.0 107 247-357 9-125 (289)
71 cd04887 ACT_MalLac-Enz ACT_Mal 97.5 0.001 2.3E-08 51.6 9.4 61 119-186 2-63 (74)
72 PRK06027 purU formyltetrahydro 97.4 0.0043 9.4E-08 61.6 14.9 102 246-352 5-116 (286)
73 COG3830 ACT domain-containing 97.4 0.00018 3.8E-09 58.2 4.0 49 35-83 3-51 (90)
74 PRK06027 purU formyltetrahydro 97.4 0.0047 1E-07 61.3 14.8 113 34-151 5-124 (286)
75 TIGR00655 PurU formyltetrahydr 97.4 0.0052 1.1E-07 60.8 15.0 105 249-358 2-117 (280)
76 COG3830 ACT domain-containing 97.4 0.00028 6E-09 57.1 4.8 68 116-189 3-70 (90)
77 cd04887 ACT_MalLac-Enz ACT_Mal 97.3 0.0028 6E-08 49.2 9.3 61 250-316 2-63 (74)
78 PRK13011 formyltetrahydrofolat 97.2 0.0077 1.7E-07 59.8 14.3 106 247-358 7-122 (286)
79 PRK06737 acetolactate synthase 97.2 0.0029 6.3E-08 50.0 8.9 68 326-399 3-71 (76)
80 cd04905 ACT_CM-PDT C-terminal 97.2 0.0029 6.3E-08 50.2 8.7 66 326-393 2-68 (80)
81 cd04886 ACT_ThrD-II-like C-ter 97.2 0.0038 8.3E-08 47.4 9.1 61 119-186 1-66 (73)
82 PRK13011 formyltetrahydrofolat 97.1 0.011 2.4E-07 58.7 14.3 111 35-151 7-124 (286)
83 TIGR00119 acolac_sm acetolacta 97.1 0.0025 5.5E-08 57.5 8.7 70 326-400 2-71 (157)
84 PRK06737 acetolactate synthase 97.1 0.0038 8.1E-08 49.4 8.6 64 117-188 3-68 (76)
85 CHL00100 ilvH acetohydroxyacid 97.1 0.0021 4.6E-08 59.0 7.8 65 326-394 3-67 (174)
86 cd04877 ACT_TyrR N-terminal AC 97.1 0.0031 6.6E-08 49.3 7.7 59 118-186 2-60 (74)
87 cd04889 ACT_PDH-BS-like C-term 97.0 0.0023 5E-08 47.0 6.3 46 119-164 1-47 (56)
88 CHL00100 ilvH acetohydroxyacid 96.9 0.0055 1.2E-07 56.2 9.5 65 117-189 3-69 (174)
89 cd04886 ACT_ThrD-II-like C-ter 96.9 0.0074 1.6E-07 45.8 8.9 67 328-397 1-70 (73)
90 PRK08178 acetolactate synthase 96.9 0.0056 1.2E-07 50.4 8.4 65 115-188 7-73 (96)
91 cd04908 ACT_Bt0572_1 N-termina 96.9 0.0037 7.9E-08 47.7 7.0 39 117-155 2-40 (66)
92 cd04908 ACT_Bt0572_1 N-termina 96.9 0.0072 1.6E-07 46.1 8.5 45 326-372 2-46 (66)
93 PRK13562 acetolactate synthase 96.9 0.005 1.1E-07 49.5 7.7 67 326-395 3-69 (84)
94 COG0788 PurU Formyltetrahydrof 96.9 0.0036 7.9E-08 60.4 8.0 43 34-76 6-50 (287)
95 cd04878 ACT_AHAS N-terminal AC 96.9 0.0099 2.1E-07 44.9 9.0 62 327-393 2-64 (72)
96 cd04879 ACT_3PGDH-like ACT_3PG 96.8 0.0079 1.7E-07 45.3 8.2 44 328-371 2-47 (71)
97 cd04888 ACT_PheB-BS C-terminal 96.8 0.0095 2.1E-07 46.2 8.8 62 118-186 2-65 (76)
98 cd04877 ACT_TyrR N-terminal AC 96.8 0.0051 1.1E-07 48.1 7.2 59 249-316 2-60 (74)
99 PRK11895 ilvH acetolactate syn 96.8 0.0061 1.3E-07 55.3 8.6 70 326-400 3-72 (161)
100 cd04889 ACT_PDH-BS-like C-term 96.8 0.0039 8.5E-08 45.8 6.1 46 328-373 1-47 (56)
101 cd04909 ACT_PDH-BS C-terminal 96.8 0.01 2.3E-07 45.3 8.6 62 326-394 2-65 (69)
102 PRK13562 acetolactate synthase 96.8 0.0084 1.8E-07 48.2 8.1 65 117-188 3-69 (84)
103 PRK11152 ilvM acetolactate syn 96.7 0.01 2.2E-07 47.0 8.0 67 326-399 4-71 (76)
104 PRK08178 acetolactate synthase 96.7 0.012 2.6E-07 48.5 8.6 70 325-400 8-77 (96)
105 COG0788 PurU Formyltetrahydrof 96.7 0.0041 8.8E-08 60.0 6.8 38 246-283 6-43 (287)
106 TIGR00119 acolac_sm acetolacta 96.6 0.015 3.3E-07 52.5 9.6 65 117-189 2-68 (157)
107 PRK11895 ilvH acetolactate syn 96.6 0.016 3.4E-07 52.6 9.6 65 117-189 3-69 (161)
108 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.6 0.016 3.5E-07 44.6 8.6 63 118-186 2-65 (79)
109 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.6 0.0079 1.7E-07 46.4 6.5 63 327-393 2-65 (79)
110 cd04879 ACT_3PGDH-like ACT_3PG 96.5 0.015 3.3E-07 43.7 7.8 58 38-100 2-61 (71)
111 PRK07431 aspartate kinase; Pro 96.5 1.1 2.5E-05 48.9 25.3 209 33-318 346-580 (587)
112 cd04878 ACT_AHAS N-terminal AC 96.5 0.021 4.6E-07 43.1 8.6 62 118-186 2-64 (72)
113 cd04903 ACT_LSD C-terminal ACT 96.5 0.017 3.6E-07 43.6 8.0 33 328-360 2-34 (71)
114 cd04904 ACT_AAAH ACT domain of 96.5 0.017 3.6E-07 45.3 7.8 63 328-394 3-66 (74)
115 cd04909 ACT_PDH-BS C-terminal 96.5 0.026 5.6E-07 43.1 8.8 36 117-152 2-37 (69)
116 cd04888 ACT_PheB-BS C-terminal 96.5 0.012 2.6E-07 45.7 6.9 63 327-393 2-65 (76)
117 cd04880 ACT_AAAH-PDT-like ACT 96.4 0.025 5.3E-07 44.2 8.5 64 329-394 3-67 (75)
118 PRK11152 ilvM acetolactate syn 96.3 0.024 5.2E-07 44.9 7.8 62 117-187 4-67 (76)
119 cd04882 ACT_Bt0572_2 C-termina 96.3 0.02 4.4E-07 42.8 7.1 35 328-362 2-36 (65)
120 cd04902 ACT_3PGDH-xct C-termin 96.3 0.019 4E-07 44.1 7.1 58 328-389 2-61 (73)
121 cd04882 ACT_Bt0572_2 C-termina 96.2 0.015 3.3E-07 43.4 6.3 46 37-82 1-48 (65)
122 cd04884 ACT_CBS C-terminal ACT 96.2 0.038 8.1E-07 42.7 8.2 34 119-152 2-35 (72)
123 cd04874 ACT_Af1403 N-terminal 96.1 0.037 8E-07 41.8 7.9 36 327-362 2-37 (72)
124 cd04901 ACT_3PGDH C-terminal A 96.0 0.0088 1.9E-07 45.5 3.9 44 328-371 2-45 (69)
125 PRK08577 hypothetical protein; 96.0 0.067 1.5E-06 47.0 10.0 43 111-153 51-93 (136)
126 cd04903 ACT_LSD C-terminal ACT 96.0 0.053 1.1E-06 40.8 8.2 57 38-99 2-60 (71)
127 cd04876 ACT_RelA-SpoT ACT dom 95.9 0.072 1.6E-06 38.9 8.6 45 119-163 1-46 (71)
128 cd04874 ACT_Af1403 N-terminal 95.9 0.043 9.3E-07 41.5 7.3 45 118-162 2-47 (72)
129 cd04931 ACT_PAH ACT domain of 95.8 0.052 1.1E-06 44.4 8.0 51 326-377 15-66 (90)
130 cd04876 ACT_RelA-SpoT ACT dom 95.8 0.074 1.6E-06 38.9 8.4 61 328-393 1-62 (71)
131 cd04902 ACT_3PGDH-xct C-termin 95.8 0.04 8.7E-07 42.2 7.1 46 38-83 2-49 (73)
132 cd04884 ACT_CBS C-terminal ACT 95.8 0.052 1.1E-06 42.0 7.6 64 328-394 2-66 (72)
133 PF13710 ACT_5: ACT domain; PD 95.8 0.024 5.2E-07 43.1 5.5 60 334-398 1-60 (63)
134 PRK08577 hypothetical protein; 95.8 0.15 3.2E-06 44.9 11.2 76 236-316 43-122 (136)
135 cd04905 ACT_CM-PDT C-terminal 95.8 0.12 2.5E-06 40.9 9.6 48 117-164 2-50 (80)
136 cd04901 ACT_3PGDH C-terminal A 95.7 0.013 2.8E-07 44.6 3.8 46 38-83 2-47 (69)
137 PF13710 ACT_5: ACT domain; PD 95.7 0.041 8.8E-07 41.9 6.4 56 125-188 1-58 (63)
138 cd02116 ACT ACT domains are co 95.7 0.065 1.4E-06 37.2 7.3 35 328-362 1-35 (60)
139 PRK07334 threonine dehydratase 95.6 0.19 4.1E-06 52.3 13.2 64 116-186 326-394 (403)
140 cd04883 ACT_AcuB C-terminal AC 95.6 0.09 2E-06 40.2 8.2 35 325-359 1-35 (72)
141 cd04883 ACT_AcuB C-terminal AC 95.5 0.13 2.7E-06 39.4 8.6 47 36-82 2-50 (72)
142 PRK04435 hypothetical protein; 95.4 0.15 3.2E-06 45.6 9.9 68 113-186 66-134 (147)
143 cd02116 ACT ACT domains are co 95.1 0.17 3.7E-06 34.9 7.9 35 119-153 1-35 (60)
144 PRK06635 aspartate kinase; Rev 95.0 0.42 9.1E-06 49.7 13.4 105 37-147 264-374 (404)
145 cd04898 ACT_ACR-like_4 ACT dom 94.9 0.057 1.2E-06 42.2 5.0 71 119-190 3-76 (77)
146 cd04929 ACT_TPH ACT domain of 94.9 0.095 2.1E-06 41.2 6.5 50 328-378 3-53 (74)
147 PRK04435 hypothetical protein; 94.9 0.28 6.1E-06 43.8 10.3 54 30-83 64-118 (147)
148 TIGR00656 asp_kin_monofn aspar 94.8 0.68 1.5E-05 48.1 14.5 101 245-356 258-371 (401)
149 cd04930 ACT_TH ACT domain of t 94.5 0.16 3.5E-06 43.5 7.4 53 325-378 41-94 (115)
150 TIGR00656 asp_kin_monofn aspar 94.5 0.62 1.3E-05 48.3 13.3 106 33-146 258-370 (401)
151 PRK11899 prephenate dehydratas 94.4 0.16 3.5E-06 50.2 8.2 73 325-399 194-267 (279)
152 PRK07334 threonine dehydratase 94.4 0.24 5.3E-06 51.5 9.9 64 247-316 326-394 (403)
153 cd04898 ACT_ACR-like_4 ACT dom 94.4 0.055 1.2E-06 42.3 3.8 44 328-371 3-48 (77)
154 PRK09181 aspartate kinase; Val 94.2 3.1 6.7E-05 44.4 17.9 104 245-359 327-438 (475)
155 PRK10872 relA (p)ppGpp synthet 93.9 0.28 6.1E-06 54.7 9.6 65 115-186 665-731 (743)
156 PRK06291 aspartate kinase; Pro 93.7 1.3 2.8E-05 47.0 14.0 107 33-147 319-432 (465)
157 cd04871 ACT_PSP_2 ACT domains 93.6 0.07 1.5E-06 43.0 3.2 60 328-393 2-71 (84)
158 PRK10872 relA (p)ppGpp synthet 93.6 0.41 8.8E-06 53.5 10.1 64 247-316 666-731 (743)
159 PRK10622 pheA bifunctional cho 93.6 0.28 6.1E-06 50.8 8.4 74 325-400 297-371 (386)
160 PRK08210 aspartate kinase I; R 93.6 1 2.2E-05 46.9 12.6 100 33-146 269-372 (403)
161 cd04880 ACT_AAAH-PDT-like ACT 93.5 0.64 1.4E-05 36.0 8.5 64 119-186 2-66 (75)
162 cd04871 ACT_PSP_2 ACT domains 93.3 0.06 1.3E-06 43.4 2.4 61 119-187 2-72 (84)
163 cd04931 ACT_PAH ACT domain of 93.3 0.91 2E-05 37.1 9.3 75 240-318 7-82 (90)
164 TIGR00719 sda_beta L-serine de 93.2 0.4 8.6E-06 45.4 8.2 60 323-386 146-207 (208)
165 cd04885 ACT_ThrD-I Tandem C-te 93.2 0.51 1.1E-05 36.1 7.3 60 120-186 2-61 (68)
166 COG0077 PheA Prephenate dehydr 93.2 0.35 7.5E-06 47.7 7.9 73 325-399 194-267 (279)
167 PRK06635 aspartate kinase; Rev 93.1 1.8 3.9E-05 44.9 13.7 104 245-357 260-375 (404)
168 COG0527 LysC Aspartokinases [A 92.8 4.3 9.3E-05 43.0 15.9 107 244-357 304-418 (447)
169 PRK11092 bifunctional (p)ppGpp 92.7 0.56 1.2E-05 52.3 9.6 65 115-186 625-690 (702)
170 PRK11092 bifunctional (p)ppGpp 92.5 0.7 1.5E-05 51.6 10.0 64 247-316 626-690 (702)
171 cd04885 ACT_ThrD-I Tandem C-te 92.1 0.91 2E-05 34.6 7.5 63 329-396 2-64 (68)
172 COG1707 ACT domain-containing 92.0 0.43 9.2E-06 43.2 6.2 47 118-164 4-50 (218)
173 TIGR00691 spoT_relA (p)ppGpp s 92.0 0.91 2E-05 50.6 10.2 65 246-316 609-674 (683)
174 PF13840 ACT_7: ACT domain ; P 92.0 0.45 9.8E-06 36.2 5.6 46 244-294 3-52 (65)
175 PRK06291 aspartate kinase; Pro 91.9 3.8 8.2E-05 43.6 14.4 104 245-359 319-435 (465)
176 PRK11790 D-3-phosphoglycerate 91.9 0.35 7.6E-06 50.5 6.5 61 325-389 338-398 (409)
177 PRK08210 aspartate kinase I; R 91.8 3.8 8.1E-05 42.6 14.0 97 245-355 269-372 (403)
178 TIGR00691 spoT_relA (p)ppGpp s 91.8 0.82 1.8E-05 50.9 9.5 65 115-186 609-674 (683)
179 PRK09034 aspartate kinase; Rev 91.8 5.7 0.00012 42.1 15.5 108 34-149 307-421 (454)
180 COG1707 ACT domain-containing 91.3 0.73 1.6E-05 41.7 6.9 46 37-82 4-51 (218)
181 COG0317 SpoT Guanosine polypho 91.1 0.86 1.9E-05 50.4 8.6 67 114-186 625-691 (701)
182 TIGR00719 sda_beta L-serine de 90.8 1.1 2.3E-05 42.5 8.0 54 111-164 143-198 (208)
183 PRK09034 aspartate kinase; Rev 90.8 5.7 0.00012 42.1 14.3 108 245-360 306-423 (454)
184 PF13840 ACT_7: ACT domain ; P 90.7 1.1 2.3E-05 34.1 6.5 46 114-164 4-53 (65)
185 PRK06382 threonine dehydratase 90.7 3.4 7.3E-05 43.1 12.4 65 115-186 329-398 (406)
186 PRK09436 thrA bifunctional asp 90.5 4.5 9.8E-05 46.1 14.0 106 245-357 313-431 (819)
187 PRK09436 thrA bifunctional asp 90.3 4.2 9.1E-05 46.4 13.5 109 33-148 313-431 (819)
188 COG0317 SpoT Guanosine polypho 90.1 1.4 3E-05 48.9 9.1 74 237-316 616-691 (701)
189 KOG2663 Acetolactate synthase, 90.1 0.77 1.7E-05 44.2 6.2 66 115-188 76-143 (309)
190 PRK14630 hypothetical protein; 89.8 2.5 5.4E-05 37.6 9.0 95 256-353 6-100 (143)
191 PRK11790 D-3-phosphoglycerate 89.7 0.66 1.4E-05 48.5 6.1 50 114-163 336-385 (409)
192 PRK06349 homoserine dehydrogen 89.6 1.6 3.6E-05 45.8 9.0 65 325-393 348-412 (426)
193 PRK14646 hypothetical protein; 89.4 4.2 9.2E-05 36.6 10.3 94 259-353 8-103 (155)
194 PRK09181 aspartate kinase; Val 89.4 6.1 0.00013 42.2 13.2 104 34-148 328-436 (475)
195 cd04904 ACT_AAAH ACT domain of 89.3 2.3 4.9E-05 33.1 7.5 47 118-164 2-49 (74)
196 PLN02551 aspartokinase 89.1 9.8 0.00021 41.1 14.6 109 33-148 364-479 (521)
197 PRK08818 prephenate dehydrogen 88.6 0.91 2E-05 46.8 6.1 49 325-374 295-344 (370)
198 TIGR00657 asp_kinases aspartat 88.6 11 0.00023 39.7 14.4 107 34-148 301-413 (441)
199 PRK14634 hypothetical protein; 88.6 4 8.7E-05 36.8 9.6 95 258-353 7-103 (155)
200 PLN02317 arogenate dehydratase 88.6 1.9 4.2E-05 44.4 8.4 68 326-395 284-366 (382)
201 PRK06382 threonine dehydratase 88.5 2 4.3E-05 44.9 8.7 82 308-395 314-400 (406)
202 PRK14636 hypothetical protein; 88.2 4.6 0.0001 37.2 9.8 97 256-353 3-101 (176)
203 PLN02551 aspartokinase 87.7 14 0.0003 39.9 14.6 133 244-392 363-508 (521)
204 PRK06545 prephenate dehydrogen 87.6 1.9 4E-05 44.2 7.7 51 113-163 287-337 (359)
205 cd04906 ACT_ThrD-I_1 First of 87.4 4.3 9.4E-05 32.4 8.2 27 118-146 3-29 (85)
206 COG0440 IlvH Acetolactate synt 87.3 2.2 4.8E-05 38.6 6.9 66 117-189 5-71 (163)
207 PRK14645 hypothetical protein; 87.3 7 0.00015 35.2 10.2 95 257-352 8-104 (154)
208 TIGR00657 asp_kinases aspartat 87.1 12 0.00026 39.3 13.7 102 245-357 300-413 (441)
209 KOG2663 Acetolactate synthase, 87.0 1.6 3.4E-05 42.2 6.1 70 324-400 76-147 (309)
210 TIGR01127 ilvA_1Cterm threonin 86.8 11 0.00023 38.8 12.9 64 116-186 305-373 (380)
211 cd04906 ACT_ThrD-I_1 First of 86.1 5.8 0.00013 31.6 8.3 62 37-105 3-65 (85)
212 TIGR01127 ilvA_1Cterm threonin 85.9 4.6 9.9E-05 41.6 9.5 84 309-398 290-378 (380)
213 cd04929 ACT_TPH ACT domain of 85.7 3.3 7.3E-05 32.4 6.5 47 118-164 2-49 (74)
214 PRK13581 D-3-phosphoglycerate 85.3 2.2 4.8E-05 46.1 7.1 61 325-389 452-514 (526)
215 PRK08198 threonine dehydratase 85.3 6.2 0.00014 41.0 10.3 37 114-150 325-361 (404)
216 PRK06349 homoserine dehydrogen 85.0 3.9 8.5E-05 42.9 8.7 51 115-165 347-397 (426)
217 PRK12483 threonine dehydratase 84.9 47 0.001 35.9 16.9 142 245-399 343-508 (521)
218 PRK06545 prephenate dehydrogen 84.7 2.5 5.4E-05 43.3 6.9 48 325-372 290-337 (359)
219 PRK14637 hypothetical protein; 84.3 11 0.00023 33.9 9.9 93 257-353 7-101 (151)
220 PRK09224 threonine dehydratase 84.2 45 0.00098 35.9 16.4 139 245-395 326-487 (504)
221 PRK11898 prephenate dehydratas 84.2 4.2 9.2E-05 40.3 8.0 112 268-399 156-270 (283)
222 PRK12483 threonine dehydratase 84.1 40 0.00086 36.5 15.9 120 33-160 343-483 (521)
223 PRK08818 prephenate dehydrogen 84.0 2.5 5.3E-05 43.7 6.4 49 115-164 294-343 (370)
224 COG0527 LysC Aspartokinases [A 83.9 53 0.0012 34.8 16.5 107 33-148 305-418 (447)
225 COG0440 IlvH Acetolactate synt 83.7 3.1 6.7E-05 37.7 6.1 69 326-400 5-74 (163)
226 PRK09084 aspartate kinase III; 82.9 14 0.00031 39.1 11.8 101 33-140 304-411 (448)
227 TIGR01327 PGDH D-3-phosphoglyc 82.8 2.7 5.9E-05 45.4 6.5 61 325-389 451-513 (525)
228 TIGR01270 Trp_5_monoox tryptop 82.7 2.3 5E-05 44.8 5.6 65 325-390 31-98 (464)
229 PRK14640 hypothetical protein; 82.5 14 0.00031 33.1 10.0 92 259-353 7-100 (152)
230 PRK10820 DNA-binding transcrip 82.4 4 8.7E-05 44.0 7.6 36 327-362 2-37 (520)
231 TIGR01268 Phe4hydrox_tetr phen 80.9 5.8 0.00013 41.6 7.8 63 326-390 17-83 (436)
232 PRK14639 hypothetical protein; 80.6 15 0.00033 32.5 9.3 86 265-353 4-91 (140)
233 PRK11899 prephenate dehydratas 80.4 8.9 0.00019 38.0 8.6 49 116-164 194-243 (279)
234 cd04932 ACT_AKiii-LysC-EC_1 AC 79.9 16 0.00034 28.6 8.2 61 327-393 3-67 (75)
235 cd04930 ACT_TH ACT domain of t 79.8 9.4 0.0002 32.6 7.5 51 248-299 42-93 (115)
236 cd04935 ACT_AKiii-DAPDC_1 ACT 79.1 11 0.00024 29.4 7.2 57 332-393 11-67 (75)
237 COG2150 Predicted regulator of 79.0 3.4 7.4E-05 37.2 4.6 63 32-100 92-157 (167)
238 PRK09224 threonine dehydratase 78.7 79 0.0017 34.0 15.9 109 34-150 327-456 (504)
239 COG0077 PheA Prephenate dehydr 78.7 9.5 0.00021 37.7 8.1 50 115-164 193-243 (279)
240 COG3283 TyrR Transcriptional r 78.5 5.1 0.00011 41.1 6.2 60 327-394 2-61 (511)
241 PRK14647 hypothetical protein; 78.4 20 0.00044 32.4 9.6 91 260-353 10-102 (159)
242 PLN02550 threonine dehydratase 77.8 92 0.002 34.3 16.1 141 245-399 415-578 (591)
243 PRK14643 hypothetical protein; 77.5 27 0.00058 31.8 10.2 93 259-353 10-107 (164)
244 cd04919 ACT_AK-Hom3_2 ACT doma 76.9 24 0.00051 26.0 8.3 34 118-151 3-39 (66)
245 PRK08198 threonine dehydratase 76.5 20 0.00043 37.3 10.3 38 244-281 324-361 (404)
246 cd04922 ACT_AKi-HSDH-ThrA_2 AC 76.4 15 0.00032 27.0 7.0 34 37-70 3-39 (66)
247 PRK14633 hypothetical protein; 76.2 27 0.00058 31.3 9.7 90 260-353 6-97 (150)
248 cd04922 ACT_AKi-HSDH-ThrA_2 AC 76.0 26 0.00056 25.6 8.2 32 118-149 3-37 (66)
249 COG2150 Predicted regulator of 75.8 11 0.00024 34.1 6.9 61 327-389 95-157 (167)
250 PRK00092 ribosome maturation p 75.4 26 0.00057 31.3 9.5 91 260-353 9-101 (154)
251 PRK09084 aspartate kinase III; 75.3 32 0.0007 36.4 11.6 100 244-351 303-413 (448)
252 PRK09466 metL bifunctional asp 75.2 38 0.00083 38.7 12.8 103 33-146 315-424 (810)
253 PRK08526 threonine dehydratase 75.2 46 0.00099 34.7 12.6 76 96-186 314-394 (403)
254 PF02576 DUF150: Uncharacteris 75.1 17 0.00038 31.9 8.1 85 264-351 2-88 (141)
255 PRK14638 hypothetical protein; 74.4 29 0.00064 31.0 9.5 98 260-362 10-109 (150)
256 COG0779 Uncharacterized protei 74.2 25 0.00054 31.7 8.9 89 259-353 9-102 (153)
257 PRK08961 bifunctional aspartat 73.7 53 0.0012 37.8 13.7 135 244-393 319-461 (861)
258 cd04913 ACT_AKii-LysC-BS-like_ 73.1 18 0.00039 26.9 6.9 27 123-149 9-35 (75)
259 COG4492 PheB ACT domain-contai 72.2 22 0.00048 31.2 7.6 65 325-393 72-137 (150)
260 cd04937 ACT_AKi-DapG-BS_2 ACT 71.6 35 0.00076 25.3 8.0 28 118-145 3-33 (64)
261 PRK08961 bifunctional aspartat 71.6 49 0.0011 38.1 12.7 104 33-144 320-429 (861)
262 PRK13581 D-3-phosphoglycerate 71.5 10 0.00022 41.0 6.9 61 35-100 452-514 (526)
263 COG3978 Acetolactate synthase 71.1 23 0.0005 28.2 6.8 62 325-393 3-66 (86)
264 cd04912 ACT_AKiii-LysC-EC-like 71.0 38 0.00082 26.1 8.3 63 117-186 2-67 (75)
265 cd04890 ACT_AK-like_1 ACT doma 70.8 30 0.00064 25.3 7.4 51 333-391 11-61 (62)
266 cd04919 ACT_AK-Hom3_2 ACT doma 70.6 25 0.00055 25.8 7.1 34 37-70 3-39 (66)
267 PRK14632 hypothetical protein; 69.7 39 0.00084 31.0 9.3 90 260-353 10-101 (172)
268 PLN02550 threonine dehydratase 68.5 1.9E+02 0.0042 31.9 17.0 108 34-150 416-543 (591)
269 TIGR02079 THD1 threonine dehyd 67.9 85 0.0018 32.8 12.6 79 94-186 311-390 (409)
270 cd04937 ACT_AKi-DapG-BS_2 ACT 67.7 48 0.001 24.6 8.5 29 248-276 2-33 (64)
271 PRK10622 pheA bifunctional cho 67.4 32 0.00068 35.8 9.2 50 115-164 296-346 (386)
272 PRK08526 threonine dehydratase 67.2 49 0.0011 34.5 10.7 86 309-399 311-400 (403)
273 TIGR01327 PGDH D-3-phosphoglyc 67.2 10 0.00023 40.9 5.8 59 37-100 453-513 (525)
274 cd04891 ACT_AK-LysC-DapG-like_ 65.5 21 0.00046 25.2 5.6 42 123-164 8-50 (61)
275 cd04924 ACT_AK-Arch_2 ACT doma 65.4 36 0.00078 24.8 7.0 34 37-70 3-39 (66)
276 cd04912 ACT_AKiii-LysC-EC-like 64.8 56 0.0012 25.1 8.2 63 248-316 2-67 (75)
277 PRK14631 hypothetical protein; 64.4 1.2E+02 0.0026 27.9 11.4 93 259-353 9-120 (174)
278 cd04890 ACT_AK-like_1 ACT doma 64.0 49 0.0011 24.0 7.4 36 125-164 12-47 (62)
279 PRK08841 aspartate kinase; Val 63.6 73 0.0016 33.1 11.1 122 34-190 257-378 (392)
280 cd04868 ACT_AK-like ACT domain 62.2 14 0.00031 25.7 4.1 31 118-148 2-35 (60)
281 cd04913 ACT_AKii-LysC-BS-like_ 62.0 25 0.00053 26.1 5.6 28 332-359 9-36 (75)
282 PRK14635 hypothetical protein; 61.4 74 0.0016 28.8 9.4 96 256-354 4-103 (162)
283 cd04892 ACT_AK-like_2 ACT doma 61.2 40 0.00087 23.9 6.5 32 37-68 2-36 (65)
284 cd04891 ACT_AK-LysC-DapG-like_ 61.0 31 0.00067 24.3 5.7 28 332-359 8-35 (61)
285 PRK08639 threonine dehydratase 60.8 1.1E+02 0.0024 32.0 11.9 67 114-186 334-401 (420)
286 cd04932 ACT_AKiii-LysC-EC_1 AC 60.7 14 0.0003 28.9 4.0 31 117-147 2-35 (75)
287 cd04924 ACT_AK-Arch_2 ACT doma 60.7 62 0.0013 23.5 8.2 32 118-149 3-37 (66)
288 cd04935 ACT_AKiii-DAPDC_1 ACT 60.5 64 0.0014 25.0 7.7 56 124-186 12-67 (75)
289 PF05088 Bac_GDH: Bacterial NA 60.3 79 0.0017 38.7 11.7 167 233-399 473-659 (1528)
290 COG3978 Acetolactate synthase 59.9 70 0.0015 25.6 7.6 66 116-189 3-69 (86)
291 TIGR01124 ilvA_2Cterm threonin 58.3 1.5E+02 0.0032 32.0 12.5 64 115-186 324-387 (499)
292 cd04916 ACT_AKiii-YclM-BS_2 AC 58.3 55 0.0012 23.8 6.9 34 37-70 3-39 (66)
293 cd04933 ACT_AK1-AT_1 ACT domai 58.1 46 0.001 26.3 6.6 58 332-393 11-70 (78)
294 cd04916 ACT_AKiii-YclM-BS_2 AC 57.0 73 0.0016 23.1 8.4 32 118-149 3-37 (66)
295 PRK00907 hypothetical protein; 56.7 45 0.00098 27.4 6.4 65 35-105 17-85 (92)
296 cd04934 ACT_AK-Hom3_1 CT domai 55.9 56 0.0012 25.3 6.7 54 333-393 12-65 (73)
297 PRK14641 hypothetical protein; 55.6 85 0.0018 28.9 8.8 81 269-353 20-107 (173)
298 PRK14644 hypothetical protein; 55.0 1E+02 0.0023 27.1 8.9 78 265-352 5-87 (136)
299 cd04868 ACT_AK-like ACT domain 54.5 28 0.00061 24.2 4.5 32 328-359 3-37 (60)
300 cd04892 ACT_AK-like_2 ACT doma 54.0 75 0.0016 22.4 8.1 31 118-148 2-35 (65)
301 PRK09466 metL bifunctional asp 53.9 2.3E+02 0.0049 32.6 13.7 101 245-356 315-425 (810)
302 cd04915 ACT_AK-Ectoine_2 ACT d 53.6 82 0.0018 23.6 7.1 35 36-70 3-39 (66)
303 PF05088 Bac_GDH: Bacterial NA 52.9 5.4E+02 0.012 31.9 22.7 167 24-191 330-568 (1528)
304 cd04918 ACT_AK1-AT_2 ACT domai 52.5 78 0.0017 23.5 6.8 35 37-71 3-39 (65)
305 COG4492 PheB ACT domain-contai 52.3 55 0.0012 28.8 6.5 51 114-164 70-121 (150)
306 TIGR02079 THD1 threonine dehyd 51.0 1.7E+02 0.0037 30.5 11.4 87 308-399 309-396 (409)
307 PRK14642 hypothetical protein; 50.6 1.6E+02 0.0034 27.7 9.8 90 260-353 3-103 (197)
308 PRK08841 aspartate kinase; Val 50.3 1.5E+02 0.0032 30.9 10.7 95 245-357 256-350 (392)
309 cd04921 ACT_AKi-HSDH-ThrA-like 48.4 1.2E+02 0.0026 23.1 8.6 34 248-281 2-38 (80)
310 cd04921 ACT_AKi-HSDH-ThrA-like 47.0 89 0.0019 23.8 6.6 35 36-70 2-39 (80)
311 PRK11898 prephenate dehydratas 46.9 94 0.002 30.8 8.3 49 116-164 196-246 (283)
312 PLN02317 arogenate dehydratase 46.4 1.2E+02 0.0025 31.6 9.0 37 116-152 283-319 (382)
313 PRK05925 aspartate kinase; Pro 45.9 2.7E+02 0.0058 29.5 11.9 103 34-146 299-404 (440)
314 PRK14633 hypothetical protein; 44.4 1.9E+02 0.0042 25.7 9.1 91 48-145 6-98 (150)
315 COG2061 ACT-domain-containing 44.1 2.1E+02 0.0047 25.8 9.0 31 247-277 5-35 (170)
316 cd04933 ACT_AK1-AT_1 ACT domai 43.7 24 0.00052 27.9 2.8 25 123-147 11-35 (78)
317 cd04936 ACT_AKii-LysC-BS-like_ 42.6 1.1E+02 0.0025 21.6 6.3 30 38-67 3-35 (63)
318 PRK02001 hypothetical protein; 42.3 1.4E+02 0.0031 26.7 7.9 82 265-353 12-93 (152)
319 TIGR01268 Phe4hydrox_tetr phen 41.7 1.2E+02 0.0025 32.1 8.2 65 247-315 16-81 (436)
320 PRK08639 threonine dehydratase 40.1 3E+02 0.0064 28.8 11.2 87 308-399 320-407 (420)
321 PRK14632 hypothetical protein; 39.6 2.2E+02 0.0048 26.0 8.9 90 48-144 10-101 (172)
322 cd04936 ACT_AKii-LysC-BS-like_ 39.2 1.4E+02 0.003 21.2 8.1 30 119-148 3-35 (63)
323 cd04923 ACT_AK-LysC-DapG-like_ 38.2 1.4E+02 0.0031 21.1 8.1 31 118-148 2-35 (63)
324 PRK00907 hypothetical protein; 38.1 1.2E+02 0.0025 24.9 6.1 64 247-316 17-84 (92)
325 TIGR01270 Trp_5_monoox tryptop 37.7 69 0.0015 34.0 5.9 52 113-164 28-81 (464)
326 TIGR01124 ilvA_2Cterm threonin 37.7 5.5E+02 0.012 27.6 16.1 123 33-164 323-469 (499)
327 PRK10820 DNA-binding transcrip 36.9 53 0.0012 35.4 5.1 35 118-152 2-36 (520)
328 PF04083 Abhydro_lipase: Parti 36.3 96 0.0021 23.4 5.0 34 52-85 1-34 (63)
329 cd04914 ACT_AKi-DapG-BS_1 ACT 36.2 56 0.0012 24.7 3.8 30 118-147 3-33 (67)
330 PRK00092 ribosome maturation p 35.6 3E+02 0.0065 24.5 9.0 90 48-144 9-101 (154)
331 cd04915 ACT_AK-Ectoine_2 ACT d 35.0 1.9E+02 0.0042 21.6 7.1 30 118-147 4-35 (66)
332 PRK14647 hypothetical protein; 33.3 3.4E+02 0.0074 24.4 9.0 90 48-144 10-102 (159)
333 cd04918 ACT_AK1-AT_2 ACT domai 33.3 2E+02 0.0043 21.2 8.6 44 249-294 3-48 (65)
334 PTZ00324 glutamate dehydrogena 33.1 3.5E+02 0.0077 31.7 10.9 79 22-100 216-299 (1002)
335 PRK14640 hypothetical protein; 32.9 3.5E+02 0.0075 24.2 8.9 90 48-144 8-100 (152)
336 cd07247 SgaA_N_like N-terminal 32.2 1.5E+02 0.0033 23.7 6.2 51 245-301 60-110 (114)
337 PRK14639 hypothetical protein; 31.9 3E+02 0.0064 24.3 8.2 86 52-144 3-91 (140)
338 cd04923 ACT_AK-LysC-DapG-like_ 31.4 1.1E+02 0.0025 21.6 4.7 30 328-357 3-35 (63)
339 PLN02828 formyltetrahydrofolat 30.6 4.8E+02 0.01 25.7 10.2 98 52-151 1-105 (268)
340 PRK02047 hypothetical protein; 30.2 2.7E+02 0.0059 22.6 7.1 65 35-105 16-84 (91)
341 PF01709 Transcrip_reg: Transc 30.2 1.3E+02 0.0029 28.9 6.1 103 32-150 89-196 (234)
342 cd04934 ACT_AK-Hom3_1 CT domai 29.1 53 0.0012 25.4 2.6 53 125-186 13-65 (73)
343 PRK00110 hypothetical protein; 28.6 5.5E+02 0.012 24.9 10.2 101 32-150 93-198 (245)
344 COG3603 Uncharacterized conser 26.9 3.5E+02 0.0077 23.4 7.3 38 244-283 60-100 (128)
345 PRK14040 oxaloacetate decarbox 26.5 7.4E+02 0.016 27.4 11.8 88 255-365 151-238 (593)
346 COG0779 Uncharacterized protei 26.5 4.3E+02 0.0093 23.8 8.2 78 46-128 8-88 (153)
347 cd07247 SgaA_N_like N-terminal 26.2 2.5E+02 0.0054 22.4 6.5 51 33-89 60-110 (114)
348 cd07253 Glo_EDI_BRP_like_2 Thi 25.9 1.3E+02 0.0029 24.1 4.8 51 327-380 70-121 (125)
349 PRK00341 hypothetical protein; 25.3 3.5E+02 0.0075 22.0 6.9 63 36-105 18-84 (91)
350 PRK14630 hypothetical protein; 25.2 4.8E+02 0.01 23.1 9.4 76 45-127 7-85 (143)
351 COG3603 Uncharacterized conser 25.1 1.1E+02 0.0024 26.4 4.0 23 333-355 74-96 (128)
352 cd04914 ACT_AKi-DapG-BS_1 ACT 24.2 1.3E+02 0.0028 22.7 3.9 43 37-83 3-46 (67)
353 cd07245 Glo_EDI_BRP_like_9 Thi 24.0 1.3E+02 0.0029 23.4 4.4 47 326-379 66-112 (114)
354 cd04910 ACT_AK-Ectoine_1 ACT d 23.4 3.6E+02 0.0077 20.9 8.1 61 117-189 2-65 (71)
355 PRK14646 hypothetical protein; 23.3 5.4E+02 0.012 23.0 8.5 61 338-399 9-69 (155)
356 cd07937 DRE_TIM_PC_TC_5S Pyruv 23.3 5.4E+02 0.012 25.1 9.2 86 256-364 146-231 (275)
357 PRK12331 oxaloacetate decarbox 23.0 9.2E+02 0.02 25.6 11.7 86 256-364 151-236 (448)
358 PF12681 Glyoxalase_2: Glyoxal 22.4 2.5E+02 0.0054 22.0 5.7 51 33-89 55-105 (108)
359 TIGR01033 DNA-binding regulato 22.4 7.1E+02 0.015 24.0 11.0 104 31-150 92-200 (238)
360 cd04911 ACT_AKiii-YclM-BS_1 AC 22.2 2.2E+02 0.0047 22.5 4.9 54 333-393 12-65 (76)
361 cd04920 ACT_AKiii-DAPDC_2 ACT 21.8 3.3E+02 0.0072 20.0 8.2 27 249-275 2-31 (63)
362 cd07261 Glo_EDI_BRP_like_11 Th 21.7 2E+02 0.0044 23.0 5.1 52 34-89 59-110 (114)
363 COG1438 ArgR Arginine represso 21.6 5.9E+02 0.013 22.8 8.9 117 44-186 18-148 (150)
364 COG3283 TyrR Transcriptional r 21.6 1.9E+02 0.0042 30.0 5.6 33 118-150 2-34 (511)
365 PF13399 LytR_C: LytR cell env 20.2 3.7E+02 0.008 21.1 6.1 35 117-151 4-39 (90)
366 PTZ00324 glutamate dehydrogena 20.0 6.8E+02 0.015 29.5 10.1 79 234-312 216-299 (1002)
No 1
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=1.9e-27 Score=265.35 Aligned_cols=163 Identities=25% Similarity=0.373 Sum_probs=147.5
Q ss_pred CCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEe-cCCEEEEEEEEEeCCCCCCCCHHHHHHH
Q 013389 232 TDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINT-AGERAYLEFYIRHIDGTPISSEPERQRV 310 (444)
Q Consensus 232 ~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T-~g~~a~d~F~V~~~~g~~l~~~~~~~~l 310 (444)
..+|.|.+++.++.++|+|+|+++||||||++|+++|+.+|+||++|+|.| .+|++.|+|||++.+|.++. ++++++|
T Consensus 662 ~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~l 740 (854)
T PRK01759 662 RGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQL 740 (854)
T ss_pred CCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHHH
Confidence 357888899999999999999999999999999999999999999999988 78999999999999999985 5688999
Q ss_pred HHHHHHHhccC--------C--------------------CCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC
Q 013389 311 IQCLEAAVGRR--------A--------------------SEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER 362 (444)
Q Consensus 311 ~~~L~~al~rr--------~--------------------~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g 362 (444)
++.|.++|..+ . ...++|||.|.|||||||+|+++|.+.|++|+.|+|+|.|
T Consensus 741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~g 820 (854)
T PRK01759 741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIG 820 (854)
T ss_pred HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccC
Confidence 99999887411 0 0147999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013389 363 DEALNIFYVTDEMGNPADPKIIEAVRQKIGLSN 395 (444)
Q Consensus 363 ~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~ 395 (444)
++|+|+|||+|..|.|++++..++|+++|.+++
T Consensus 821 erv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 821 EKAEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred ceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 999999999999999998766699999998754
No 2
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=1.9e-27 Score=266.12 Aligned_cols=162 Identities=24% Similarity=0.335 Sum_probs=148.3
Q ss_pred CCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHH
Q 013389 233 DYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVI 311 (444)
Q Consensus 233 ~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~ 311 (444)
.+|.|.+++.++.++|+|+|+++||||||++|+++|+.+|+||++|+|+|.+ |++.|+|+|++.+|.++. ++++++|+
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~-~~~~~~I~ 765 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLS-QDRHQVIR 765 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCC-HHHHHHHH
Confidence 5788889999999999999999999999999999999999999999999875 599999999999999885 56889999
Q ss_pred HHHHHHhccC---------C--------------------CCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC
Q 013389 312 QCLEAAVGRR---------A--------------------SEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER 362 (444)
Q Consensus 312 ~~L~~al~rr---------~--------------------~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g 362 (444)
++|.++|.++ . +..++|||.|.|||||||+|+++|.++|++|+.|+|+|.|
T Consensus 766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g 845 (884)
T PRK05007 766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG 845 (884)
T ss_pred HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence 9999988421 0 1147899999999999999999999999999999999999
Q ss_pred ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013389 363 DEALNIFYVTDEMGNPADPKIIEAVRQKIGLSN 395 (444)
Q Consensus 363 ~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~ 395 (444)
++|+|+|||+|..|.|++++.+++|+++|.+++
T Consensus 846 era~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l 878 (884)
T PRK05007 846 ERVEDLFILATADRRALNEELQQELRQRLTEAL 878 (884)
T ss_pred ceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999888899999999866
No 3
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.95 E-value=4.6e-27 Score=262.23 Aligned_cols=181 Identities=19% Similarity=0.278 Sum_probs=156.3
Q ss_pred CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-eCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389 111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (444)
Q Consensus 111 ~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~ 189 (444)
+++.++|+|+|+++||||||++|+++|+.+|+||.+|+|.| .+|++.|+|||+++ +|.++ +++++++|++.|.++|.
T Consensus 672 ~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~-~g~~~-~~~~~~~l~~~L~~aL~ 749 (854)
T PRK01759 672 RFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL-NGKLL-EFDRRRQLEQALTKALN 749 (854)
T ss_pred cCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC-CCCCC-CHHHHHHHHHHHHHHHc
Confidence 45668999999999999999999999999999999999998 68999999999995 78888 57899999999999999
Q ss_pred CCCcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHH
Q 013389 190 GDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLT 269 (444)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~ 269 (444)
++.... . .. ++..+. + ....+|.|.|+|..+..+|+|+|.++||||||++|+++|.
T Consensus 750 ~~~~~~---~-------~~-~~~~~~----~---------~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~ 805 (854)
T PRK01759 750 TNKLKK---L-------NL-EENHKL----Q---------HFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFS 805 (854)
T ss_pred CCCCcc---h-------hc-cccccc----c---------CCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHH
Confidence 854211 0 00 010010 1 1236799999999999999999999999999999999999
Q ss_pred hCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Q 013389 270 DMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV 318 (444)
Q Consensus 270 ~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al 318 (444)
++|++|+.|+|+|.|+++.|+|||++.+|.+++++ +++.|+++|.++|
T Consensus 806 ~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~-~~~~l~~~L~~~l 853 (854)
T PRK01759 806 ELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEE-ERKALKSRLLSNL 853 (854)
T ss_pred HCCCEEEEEEEcccCceEEEEEEEECCCCCcCChH-HHHHHHHHHHHHh
Confidence 99999999999999999999999999999999876 4599999998776
No 4
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=2.1e-26 Score=257.74 Aligned_cols=183 Identities=23% Similarity=0.232 Sum_probs=156.6
Q ss_pred CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389 111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (444)
Q Consensus 111 ~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~ 189 (444)
.++.++|+|+|+++||||||++||++|+.+|+||.+|+|+|. +|++.|+|||+++ .|.++ +++++++|++.|.++|.
T Consensus 696 ~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~-~g~~~-~~~~~~~I~~~L~~aL~ 773 (884)
T PRK05007 696 QATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEP-DGSPL-SQDRHQVIRKALEQALT 773 (884)
T ss_pred cCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECC-CCCCC-CHHHHHHHHHHHHHHHc
Confidence 445679999999999999999999999999999999999986 5699999999995 78887 56899999999999998
Q ss_pred CCCcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHH
Q 013389 190 GDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLT 269 (444)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~ 269 (444)
+..... . . ....+++. + ....+|.|.|+|..+..+|+|+|.++||||||++|+++|.
T Consensus 774 ~~~~~~---~-~---~~~~~~~~-------~---------~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~ 830 (884)
T PRK05007 774 QSSPQP---P-K---PRRLPAKL-------R---------HFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFA 830 (884)
T ss_pred CCCCCc---c-c---cccccccc-------C---------CCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHH
Confidence 853211 0 0 00011111 1 2246799999999999999999999999999999999999
Q ss_pred hCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhc
Q 013389 270 DMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVG 319 (444)
Q Consensus 270 ~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~ 319 (444)
++|++|+.|+|.|.|+++.|+|||++.+|.+++ +++++.|++.|.++|.
T Consensus 831 ~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~ 879 (884)
T PRK05007 831 DLGISLHGARITTIGERVEDLFILATADRRALN-EELQQELRQRLTEALN 879 (884)
T ss_pred HCCcEEEEEEEeccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998 5588999999988874
No 5
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.95 E-value=3.6e-26 Score=255.98 Aligned_cols=184 Identities=22% Similarity=0.321 Sum_probs=157.4
Q ss_pred CCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCC-ChHHHHHHHHHHHHHhcCC
Q 013389 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIE-DSQQIDRIEARLRNVLKGD 191 (444)
Q Consensus 114 ~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~-~~~r~~~i~~~L~~vL~~~ 191 (444)
.+.++|.|+++||||||++||++|+.+|+||.+|+|+|+ +|++.|+|+|+++ .|.++. +++++++|++.|.++|.|+
T Consensus 702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~-~g~~~~~~~~r~~~i~~~L~~~L~~~ 780 (895)
T PRK00275 702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD-DGEPIGDNPARIEQIREGLTEALRNP 780 (895)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC-CCCCccchHHHHHHHHHHHHHHHcCC
Confidence 478999999999999999999999999999999999885 6899999999995 677753 4689999999999999986
Q ss_pred CcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHHhC
Q 013389 192 NDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDM 271 (444)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~ 271 (444)
.+.. ..+ ..+.++++ +. ...+|.|.+++..+.++|+|+|+++||||||++|+++|+.+
T Consensus 781 ~~~~---~~~---~~~~~~~~-------~~---------~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~ 838 (895)
T PRK00275 781 DDYP---TII---QRRVPRQL-------KH---------FAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEF 838 (895)
T ss_pred Cccc---hhh---hhhhhhhc-------cC---------CCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHC
Confidence 4321 001 01112111 11 23579999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc
Q 013389 272 EYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR 320 (444)
Q Consensus 272 ~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r 320 (444)
|+||++|+|.|.|+++.|+|||++.+|.++.+++++++|++.|.++|..
T Consensus 839 ~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~ 887 (895)
T PRK00275 839 DLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDA 887 (895)
T ss_pred CCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998877899999999998853
No 6
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=5.2e-25 Score=245.30 Aligned_cols=181 Identities=28% Similarity=0.278 Sum_probs=152.0
Q ss_pred CCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-eCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcC
Q 013389 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG 190 (444)
Q Consensus 112 ~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~ 190 (444)
+..+.++|.|+++||||||++||++|+.+|+||.+|+|+| .+|.+.|+|+|.++ .|.+ ++++.+|++.|.++|.|
T Consensus 686 ~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~---~~~~~~i~~~l~~~l~~ 761 (869)
T PRK04374 686 PDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYA---DGDPQRLAAALRQVLAG 761 (869)
T ss_pred cCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCC---hHHHHHHHHHHHHHHcC
Confidence 4457899999999999999999999999999999999998 57999999999995 5553 36788899999999998
Q ss_pred CCcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHHh
Q 013389 191 DNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTD 270 (444)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~ 270 (444)
+.... . . ...+.+++. + ....+|.|.+++..+.++|+|+|.++||||||++|+++|++
T Consensus 762 ~~~~~---~-~--~~~~~~~~~-------~---------~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~ 819 (869)
T PRK04374 762 DLQKV---R-P--ARRAVPRQL-------R---------HFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRM 819 (869)
T ss_pred CCCcc---c-c--ccccCcccc-------c---------CCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHH
Confidence 64311 0 0 000011111 1 23468999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhc
Q 013389 271 MEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVG 319 (444)
Q Consensus 271 ~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~ 319 (444)
+|+||++|+|+|.|+++.|+|||++.+|.++.+++ ++.|++.|.++|.
T Consensus 820 ~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~-~~~l~~~L~~~l~ 867 (869)
T PRK04374 820 QHLRVHDARIATFGERAEDQFQITDEHDRPLSESA-RQALRDALCACLD 867 (869)
T ss_pred CCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHH-HHHHHHHHHHHhc
Confidence 99999999999999999999999999999887664 4999999988773
No 7
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.93 E-value=6.9e-25 Score=245.87 Aligned_cols=184 Identities=32% Similarity=0.377 Sum_probs=156.3
Q ss_pred CCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-eCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcCC
Q 013389 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD 191 (444)
Q Consensus 113 ~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~~ 191 (444)
..+.|+|+|+++||||||++|+++|+.+|+||.+|+|+| .+|++.|+|||+++ .|.++.+++++++|++.|.++|.++
T Consensus 665 ~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~-~g~~~~~~~~~~~i~~~L~~~L~~~ 743 (850)
T TIGR01693 665 PSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDL-FGSPPAAERVFQELLQGLVDVLAGL 743 (850)
T ss_pred CCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECC-CCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 367899999999999999999999999999999999995 68999999999995 7888878889999999999999885
Q ss_pred CcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHHhC
Q 013389 192 NDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDM 271 (444)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~ 271 (444)
.... ... ...+..+++. + ....+|.|.|+|..++.+|+|+|.|+||||||++|+++|+++
T Consensus 744 ~~~~---~~~-~~~~~~~~~~-------~---------~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~ 803 (850)
T TIGR01693 744 AKDP---DTI-SARRARRRRL-------Q---------HFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEEL 803 (850)
T ss_pred Cccc---ccc-ccccCCcccc-------c---------CCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHC
Confidence 3211 000 0000011111 1 123679999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Q 013389 272 EYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV 318 (444)
Q Consensus 272 ~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al 318 (444)
|++|.+|+|.|.|+++.|+|||++..|.|+.+ ++++.|+++|.++|
T Consensus 804 ~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 804 GLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred CCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence 99999999999999999999999999999987 58899999998765
No 8
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.93 E-value=2.1e-24 Score=241.84 Aligned_cols=177 Identities=22% Similarity=0.367 Sum_probs=147.5
Q ss_pred HHHHHHhcC---CCeEEEeecCC---CCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEEeCC
Q 013389 13 YEKLVIRMN---TPRVVIDNAVC---PTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SDGRFFMDVFHVTDLN 85 (444)
Q Consensus 13 ~~~~~~~~~---~p~v~i~~~~~---~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~-t~~g~~~dvF~V~d~~ 85 (444)
|.+++.... .|.|.+.+... .++++|+|+++||||||+++|++|+.+|+||++|+|+ |.+|+++|+|+|++++
T Consensus 676 h~~~~~~~~~~~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~ 755 (895)
T PRK00275 676 HTEAILQHPDDGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDD 755 (895)
T ss_pred HHHHHHhcccCCCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCC
Confidence 445554422 46667877665 5899999999999999999999999999999999995 5899999999999999
Q ss_pred CCCCC-chHHHH----HHHHHhhhccCC-----------------CC------CCCCCceEEEEEEcCCcchHHHHHHHH
Q 013389 86 GNKLT-DESVIS----YIEQSLETIHYG-----------------RS------NSFNGLTALELTGTDRVGLLSEVFAVL 137 (444)
Q Consensus 86 g~~~~-~~~~~~----~i~~aL~~~~~~-----------------~~------~~~~~~t~i~v~~~DrpGLl~~i~~vL 137 (444)
|.++. +++.++ .|+++|.+.... +| +++.++|+|+|+++||||||++|+++|
T Consensus 756 g~~~~~~~~r~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L 835 (895)
T PRK00275 756 GEPIGDNPARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIF 835 (895)
T ss_pred CCCccchHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHH
Confidence 98854 333434 455555443210 12 455679999999999999999999999
Q ss_pred HHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcC
Q 013389 138 ADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG 190 (444)
Q Consensus 138 ~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~ 190 (444)
+.+|+||++|+|+|.+++++|+|||+++ .|.++.++++++.|+++|.++|.+
T Consensus 836 ~~~~l~I~~AkI~T~g~~v~D~F~V~d~-~g~~l~~~~~~~~l~~~L~~~L~~ 887 (895)
T PRK00275 836 LEFDLSLQNAKIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQDAICEQLDA 887 (895)
T ss_pred HHCCCEEEEeEEEecCCEEEEEEEEECC-CCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999995 788888888999999999999976
No 9
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.93 E-value=1.2e-24 Score=243.92 Aligned_cols=163 Identities=25% Similarity=0.310 Sum_probs=147.7
Q ss_pred CCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEE-ecCCEEEEEEEEEeCCCCCCCCHHHHHHHH
Q 013389 233 DYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATIN-TAGERAYLEFYIRHIDGTPISSEPERQRVI 311 (444)
Q Consensus 233 ~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~-T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~ 311 (444)
..|.|.+.+....++|+|+|+++||||||++|+++|+.+|+||++|+|+ |.++++.|+|||.+.+|.++.+++++++|+
T Consensus 654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~ 733 (850)
T TIGR01693 654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELL 733 (850)
T ss_pred CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence 3578888887779999999999999999999999999999999999999 568999999999999999988877799999
Q ss_pred HHHHHHhccC------------CC--------------------CceEEEEEecCCCchHHHHHHHHHHCCceEEEEEee
Q 013389 312 QCLEAAVGRR------------AS--------------------EGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVS 359 (444)
Q Consensus 312 ~~L~~al~rr------------~~--------------------~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~ 359 (444)
+.|.++|.++ .+ ..+.++|.|.||||||++|+++|.++|++|+.|+|+
T Consensus 734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~ 813 (850)
T TIGR01693 734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT 813 (850)
T ss_pred HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence 9998887421 00 147999999999999999999999999999999999
Q ss_pred cCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013389 360 TERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSN 395 (444)
Q Consensus 360 T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~ 395 (444)
|.|++++|+|||++..|.|++++.++.|+++|.+++
T Consensus 814 t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 814 TFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred ecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999998888899999998865
No 10
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=2.8e-24 Score=239.74 Aligned_cols=182 Identities=21% Similarity=0.243 Sum_probs=150.2
Q ss_pred CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-eCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389 111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (444)
Q Consensus 111 ~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~ 189 (444)
.+..+.++|.|+++||||||++||++|+.+|+||.+|+|+| .+|.+.|+|+|.++ .|. ..+++++++|++.|.++|.
T Consensus 673 ~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~i~~~l~~~l~ 750 (856)
T PRK03059 673 SPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINLVEHELAERLA 750 (856)
T ss_pred cCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHHHHHHHHHHHc
Confidence 34557899999999999999999999999999999999987 57999999999995 555 4467899999999999999
Q ss_pred CCCcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHH
Q 013389 190 GDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLT 269 (444)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~ 269 (444)
|+.+.. . ...+|. .. .-+ ....+|.|.+++..+.++|+|+|+++||||||++|+++|+
T Consensus 751 ~~~~~~---~-------~~~~~~-~~--~~~---------~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~ 808 (856)
T PRK03059 751 EQAPLP---E-------PSKGRL-SR--QVK---------HFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLA 808 (856)
T ss_pred CCCCcc---h-------hhcccc-cc--ccc---------CCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHH
Confidence 864321 0 111110 00 001 1236789999999999999999999999999999999999
Q ss_pred hCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhc
Q 013389 270 DMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVG 319 (444)
Q Consensus 270 ~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~ 319 (444)
.+|+||++|+|+|.|+++.|+|||.+. ++.+++++++|++.|.++|.
T Consensus 809 ~~~l~I~~AkI~T~~~~v~DvF~V~~~---~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 809 EHRVSVHTAKINTLGERVEDTFLIDGS---GLSDNRLQIQLETELLDALA 855 (856)
T ss_pred HCCCeEEEEEEeecCCEEEEEEEEcCC---CCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999543 34566789999999988763
No 11
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=5.1e-24 Score=240.46 Aligned_cols=188 Identities=26% Similarity=0.439 Sum_probs=159.3
Q ss_pred CCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-eCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcC
Q 013389 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG 190 (444)
Q Consensus 112 ~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~ 190 (444)
+..+.++|+|+++||||||++|+++|+.+|+||.+|+|+| .+|++.|+|+|+++ .|.++.++++++.|++.|.+++.|
T Consensus 728 ~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~-~g~~~~~~~~~~~l~~~L~~~l~~ 806 (931)
T PRK05092 728 PARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA-FGRDEDEPRRLARLAKAIEDALSG 806 (931)
T ss_pred CCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHHHHHHHcC
Confidence 3457899999999999999999999999999999999999 57899999999995 787777889999999999999988
Q ss_pred CCcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHHh
Q 013389 191 DNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTD 270 (444)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~ 270 (444)
+.+.. . ...+|..... ..+ ....+|.|.|+|..+.++|+|.|.++||||||++|+++|++
T Consensus 807 ~~~~~---~-------~~~~r~~~~~-~~~---------~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~ 866 (931)
T PRK05092 807 EVRLP---E-------ALAKRTKPKK-RAR---------AFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSD 866 (931)
T ss_pred CCCCc---c-------ccccccCccc-ccc---------CCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHH
Confidence 54321 0 1111100000 001 12367999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc
Q 013389 271 MEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR 320 (444)
Q Consensus 271 ~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r 320 (444)
+|+||.+|+|.|.|+++.|+|||++.+|.++.+++.++.|+++|.++|..
T Consensus 867 ~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 867 LNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE 916 (931)
T ss_pred CCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998887889999999998854
No 12
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=4.8e-24 Score=235.92 Aligned_cols=177 Identities=27% Similarity=0.304 Sum_probs=144.8
Q ss_pred CCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcCCCc
Q 013389 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDND 193 (444)
Q Consensus 114 ~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~~~~ 193 (444)
.+.++|+|+++||||||++||++|+.+|+||++|+|+|.+|.+.|+|+|.++ .|.+. .++++++.|.++|.|+.+
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~----~~~~l~~~L~~~L~~~~~ 671 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPP----DAALLRQDLRRALDGDLD 671 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcc----hHHHHHHHHHHHHcCCCc
Confidence 6889999999999999999999999999999999999999999999999995 56543 258899999999998532
Q ss_pred ccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHHhCCe
Q 013389 194 IRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEY 273 (444)
Q Consensus 194 ~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~ 273 (444)
.. ..+ ..++..+.....+ ....++.|.+++..+.++|+|+|.++||||||++|+++|+++|+
T Consensus 672 ~~---~~~------~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~l 733 (774)
T PRK03381 672 VL---ARL------AAREAAAAAVPVR---------RPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGV 733 (774)
T ss_pred hh---hhh------hcccccccccccc---------cCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCC
Confidence 11 000 0010000000001 22367899999999999999999999999999999999999999
Q ss_pred eEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 013389 274 VVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLE 315 (444)
Q Consensus 274 nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~ 315 (444)
||++|+|+|.|+++.|+|||++.+|.++.++ ++.|++.|.
T Consensus 734 nI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 734 DVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAVL 773 (774)
T ss_pred eEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence 9999999999999999999999999998764 677777663
No 13
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.8e-23 Score=222.80 Aligned_cols=166 Identities=25% Similarity=0.307 Sum_probs=146.7
Q ss_pred CCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec-CCEEEEEEEEEeCCCCCCCCHHHHHHH
Q 013389 232 TDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA-GERAYLEFYIRHIDGTPISSEPERQRV 310 (444)
Q Consensus 232 ~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~-g~~a~d~F~V~~~~g~~l~~~~~~~~l 310 (444)
...|.|.+......+.|.|+|+++|+|.||+.++.++...|.||++|+|+|. +|++.|+|+|.+++|.++. +.+...+
T Consensus 669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~dr~~~~ 747 (867)
T COG2844 669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-EDRRAAL 747 (867)
T ss_pred ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hhHHHHH
Confidence 3568888888888899999999999999999999999999999999999885 6899999999999999988 5577788
Q ss_pred HHHHHHHhcc---------CC----------C----------CceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC
Q 013389 311 IQCLEAAVGR---------RA----------S----------EGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE 361 (444)
Q Consensus 311 ~~~L~~al~r---------r~----------~----------~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~ 361 (444)
+..|.+++.. |. | +.+.|||.+.||||||++|+++|.+++++|+.|+|+|.
T Consensus 748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~ 827 (867)
T COG2844 748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF 827 (867)
T ss_pred HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence 8888776631 10 1 14799999999999999999999999999999999999
Q ss_pred CceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013389 362 RDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKV 398 (444)
Q Consensus 362 g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~ 398 (444)
||+|+|+|||++..|.+++++....+.+.+.++++..
T Consensus 828 GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~~ 864 (867)
T COG2844 828 GERVEDVFIVTDADGQALNAELRQSLLQRLLEALLPN 864 (867)
T ss_pred cccceeEEEEeccccccCCHHHHHHHHHHHHHHhccc
Confidence 9999999999999999998888888888888876543
No 14
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=4.9e-23 Score=229.53 Aligned_cols=160 Identities=25% Similarity=0.308 Sum_probs=138.9
Q ss_pred CCEEEE-EecCCCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEe-cCCEEEEEEEEEeCCCCCCCCHHHHHHHH
Q 013389 234 YPVVTV-QNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINT-AGERAYLEFYIRHIDGTPISSEPERQRVI 311 (444)
Q Consensus 234 ~~~V~v-~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T-~g~~a~d~F~V~~~~g~~l~~~~~~~~l~ 311 (444)
.|.|.+ ...++.+.+.|+|+++||||||++|+++|+.+|+||++|+|+| .+|.+.|+|+|.+++|.+ ++.+++|+
T Consensus 676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~---~~~~~~i~ 752 (869)
T PRK04374 676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA---DGDPQRLA 752 (869)
T ss_pred CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC---hHHHHHHH
Confidence 355554 4377889999999999999999999999999999999999998 578999999999998874 24688899
Q ss_pred HHHHHHhccC----------CC--------------------CceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC
Q 013389 312 QCLEAAVGRR----------AS--------------------EGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE 361 (444)
Q Consensus 312 ~~L~~al~rr----------~~--------------------~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~ 361 (444)
+.|.++|..+ .+ ..+.|+|.|.||||||++|+++|.++|++|+.|+|+|.
T Consensus 753 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~ 832 (869)
T PRK04374 753 AALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF 832 (869)
T ss_pred HHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec
Confidence 9998877321 01 13789999999999999999999999999999999999
Q ss_pred CceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccc
Q 013389 362 RDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNL 396 (444)
Q Consensus 362 g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~ 396 (444)
|++++|+|||+|.+|.++++...++|+++|.+++-
T Consensus 833 g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~ 867 (869)
T PRK04374 833 GERAEDQFQITDEHDRPLSESARQALRDALCACLD 867 (869)
T ss_pred CCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence 99999999999999999877555999999998763
No 15
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=1.4e-22 Score=226.31 Aligned_cols=163 Identities=20% Similarity=0.223 Sum_probs=137.2
Q ss_pred CCeEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEEeCCCCCCCchH----HHH
Q 013389 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SDGRFFMDVFHVTDLNGNKLTDES----VIS 96 (444)
Q Consensus 22 ~p~v~i~~~~~~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~-t~~g~~~dvF~V~d~~g~~~~~~~----~~~ 96 (444)
.|.|.+.+....+.++|+|+++||||||++++++|+.+|+||++|+|+ +.+|+++|+|+|.+++|. ..+++ +.+
T Consensus 665 ~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~~ 743 (856)
T PRK03059 665 TPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVEH 743 (856)
T ss_pred CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHHH
Confidence 567778888888999999999999999999999999999999999996 599999999999998776 33333 334
Q ss_pred HHHHHhhhccCC-----------------CC------CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC
Q 013389 97 YIEQSLETIHYG-----------------RS------NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN 153 (444)
Q Consensus 97 ~i~~aL~~~~~~-----------------~~------~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~ 153 (444)
.|+++|.+.... +| .++.+.|.|+|+++||||||++||++|+.+|+||++|+|+|.+
T Consensus 744 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~ 823 (856)
T PRK03059 744 ELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLG 823 (856)
T ss_pred HHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecC
Confidence 456666553210 11 4556899999999999999999999999999999999999999
Q ss_pred CeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389 154 GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (444)
Q Consensus 154 ~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~ 189 (444)
++++|+|||+++ ++.+++++++|++.|.++|.
T Consensus 824 ~~v~DvF~V~~~----~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 824 ERVEDTFLIDGS----GLSDNRLQIQLETELLDALA 855 (856)
T ss_pred CEEEEEEEEcCC----CCCCHHHHHHHHHHHHHHhc
Confidence 999999999653 24478899999999998874
No 16
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.90 E-value=1.8e-22 Score=227.97 Aligned_cols=178 Identities=20% Similarity=0.232 Sum_probs=150.5
Q ss_pred HHHHHHhc----CCCeEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCC
Q 013389 13 YEKLVIRM----NTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGN 87 (444)
Q Consensus 13 ~~~~~~~~----~~p~v~i~~~~~~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d~~g~ 87 (444)
|.+++... .+|.|.+++....+.++|+|+++||||||++|+++|+.+||||.+|+|+| .+|+++|+|+|++++|.
T Consensus 706 h~~~~~~~~~~~~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~ 785 (931)
T PRK05092 706 HARFIRDADDAGRPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGR 785 (931)
T ss_pred HHHHHHhccccCCCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCC
Confidence 44455443 24688899988889999999999999999999999999999999999976 89999999999999998
Q ss_pred CCCchHHHHHHHHH----hhhccCC-------------------CC------CCCCCceEEEEEEcCCcchHHHHHHHHH
Q 013389 88 KLTDESVISYIEQS----LETIHYG-------------------RS------NSFNGLTALELTGTDRVGLLSEVFAVLA 138 (444)
Q Consensus 88 ~~~~~~~~~~i~~a----L~~~~~~-------------------~~------~~~~~~t~i~v~~~DrpGLl~~i~~vL~ 138 (444)
+..+++.++.|+++ |.+.... +| +.+..+|.|+|+++||||||++|+++|+
T Consensus 786 ~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~ 865 (931)
T PRK05092 786 DEDEPRRLARLAKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALS 865 (931)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHH
Confidence 77666555555444 4322110 01 3456789999999999999999999999
Q ss_pred HCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcCC
Q 013389 139 DLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD 191 (444)
Q Consensus 139 ~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~~ 191 (444)
++|+||.+|+|.|.++++.|+|||++. .|.++.++++++.|++.|.++|.++
T Consensus 866 ~~gl~I~~A~I~T~~~~~~D~F~v~d~-~g~~i~~~~~~~~l~~~L~~~L~~~ 917 (931)
T PRK05092 866 DLNLNIASAHIATYGERAVDVFYVTDL-FGLKITNEARQAAIRRALLAALAEG 917 (931)
T ss_pred HCCceEEEEEEEEcCCEEEEEEEEeCC-CCCcCCCHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999995 7888988889999999999999874
No 17
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.2e-23 Score=219.89 Aligned_cols=182 Identities=26% Similarity=0.340 Sum_probs=151.7
Q ss_pred CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389 111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (444)
Q Consensus 111 ~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~ 189 (444)
.+..+.|+|.|+++|+|.||+.+++++...|.||++|+|+|. +|++.|+|+|+++ .|.++. ++|...++..|.+++.
T Consensus 679 r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~-~g~~~~-~dr~~~~~~~l~~~l~ 756 (867)
T COG2844 679 RPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEP-DGFPVE-EDRRAALRGELIEALL 756 (867)
T ss_pred cccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecC-CCCccc-hhHHHHHHHHHHHHHh
Confidence 344578999999999999999999999999999999999984 7899999999996 788885 7788888888887775
Q ss_pred CCCcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHH
Q 013389 190 GDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLT 269 (444)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~ 269 (444)
..... ++.++..+|+++. | ..+|.|.|.+.....+|+++|.+.||||||++++++|+
T Consensus 757 s~~~~-------~~~~~r~~r~~~~-------f---------~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~ 813 (867)
T COG2844 757 SGKAQ-------PPRRRRIPRKLRH-------F---------PIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFA 813 (867)
T ss_pred cCCCC-------CccccccCcccce-------e---------ccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHH
Confidence 42211 0112223333322 3 36899999999999999999999999999999999999
Q ss_pred hCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Q 013389 270 DMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV 318 (444)
Q Consensus 270 ~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al 318 (444)
+++++|++|+|+|.|+++.|+|||++..|.+++.+ ..+.+.+.|.+++
T Consensus 814 dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~~~-~~q~l~~~ll~al 861 (867)
T COG2844 814 DLGLSLHSAKITTFGERVEDVFIVTDADGQALNAE-LRQSLLQRLLEAL 861 (867)
T ss_pred hcccceeeeeeccccccceeEEEEeccccccCCHH-HHHHHHHHHHHHh
Confidence 99999999999999999999999999999999654 6677777776655
No 18
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.90 E-value=7.5e-23 Score=226.41 Aligned_cols=154 Identities=29% Similarity=0.333 Sum_probs=134.5
Q ss_pred CCCEEEEEecCCCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHH
Q 013389 233 DYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQ 312 (444)
Q Consensus 233 ~~~~V~v~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~ 312 (444)
.++.|.+.+.. .+.+.|+|+|+||||||++|+++|+.+|+||++|+|.|.+|++.|+|+|.+++|.+.. ++++++
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~----~~~l~~ 660 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPD----AALLRQ 660 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcch----HHHHHH
Confidence 45788888888 8999999999999999999999999999999999999988999999999998887543 466777
Q ss_pred HHHHHhcc----------C-CC-----------------------CceEEEEEecCCCchHHHHHHHHHHCCceEEEEEe
Q 013389 313 CLEAAVGR----------R-AS-----------------------EGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEV 358 (444)
Q Consensus 313 ~L~~al~r----------r-~~-----------------------~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i 358 (444)
.|++++.. + .. ..++|+|.+.||||||++||++|.++|+||..|+|
T Consensus 661 ~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI 740 (774)
T PRK03381 661 DLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARV 740 (774)
T ss_pred HHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEE
Confidence 76655421 1 00 03789999999999999999999999999999999
Q ss_pred ecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHh
Q 013389 359 STERDEALNIFYVTDEMGNPADPKIIEAVRQKIG 392 (444)
Q Consensus 359 ~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~ 392 (444)
.|.|+++.|+|||+|..|.+++++ ++.|+++|.
T Consensus 741 ~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L~ 773 (774)
T PRK03381 741 ATLGADVVDVFYVTGAAGGPLADA-RAAVEQAVL 773 (774)
T ss_pred eecCCeEEEEEEEECCCCCcCchH-HHHHHHHhh
Confidence 999999999999999999999866 788888764
No 19
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.84 E-value=1.3e-20 Score=148.07 Aligned_cols=75 Identities=73% Similarity=1.183 Sum_probs=72.5
Q ss_pred eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC
Q 013389 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR 321 (444)
Q Consensus 247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr 321 (444)
||+|+|.|+|||||||+|+++|+++|++|++|+|.|.|+++.|+|||++.+|.|+.+++++++|+++|.++|+||
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~ 75 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR 75 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999999999999999999999999999999989999999999999875
No 20
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.79 E-value=4.5e-19 Score=138.42 Aligned_cols=68 Identities=21% Similarity=0.414 Sum_probs=64.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCC-hHHHHHHHHHHhh
Q 013389 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPAD-PKIIEAVRQKIGL 393 (444)
Q Consensus 326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~-~~~~~~lr~~l~~ 393 (444)
++|||.+.||||||++|+++|.++|++|+.|+|+|.|++++|+|||+|.+|+|+. ++.++.|+++|..
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence 6899999999999999999999999999999999999999999999999999996 4788999999864
No 21
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.78 E-value=9.3e-19 Score=137.60 Aligned_cols=70 Identities=21% Similarity=0.251 Sum_probs=66.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCCh-HHHHHHHHHHhhcc
Q 013389 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADP-KIIEAVRQKIGLSN 395 (444)
Q Consensus 326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~-~~~~~lr~~l~~~~ 395 (444)
++|||.|+||||||++|+++|.++|++|..|+|+|+|++|+|+|||+|..|.|+.+ +.++.|+++|.+++
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al 72 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAI 72 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999965 67899999998865
No 22
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.74 E-value=1.3e-17 Score=131.10 Aligned_cols=70 Identities=20% Similarity=0.302 Sum_probs=65.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHHCCceEEEEEee--cCCceEEEEEEEEcCCCCCCCh-HHHHHHHHHHhhccc
Q 013389 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVS--TERDEALNIFYVTDEMGNPADP-KIIEAVRQKIGLSNL 396 (444)
Q Consensus 326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~--T~g~~a~d~FyV~d~~g~~v~~-~~~~~lr~~l~~~~~ 396 (444)
+++||.|.|||||||+|+++|.++|++|+.|+|+ |.|++++|+||| +..|.++.+ +.++.|+++|.+++.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999 999999999999 888999854 788999999998764
No 23
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.71 E-value=6.4e-17 Score=126.29 Aligned_cols=70 Identities=19% Similarity=0.291 Sum_probs=66.0
Q ss_pred eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEA 316 (444)
Q Consensus 247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~ 316 (444)
+|+|+|.++||||||++|+++|+++|++|+.|+|.|.|+++.|+|||++.+|.|+.++++++.|++.|..
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999999999999999999999999999999999999999988788899888753
No 24
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.67 E-value=6e-16 Score=143.51 Aligned_cols=143 Identities=13% Similarity=0.139 Sum_probs=113.7
Q ss_pred CCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh-----
Q 013389 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV----- 318 (444)
Q Consensus 244 ~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al----- 318 (444)
...+.+|++.|+||||++++|+++|+++||||.+++....|+++.-++.|..+ + ...++|+..|...-
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~------~-~~~~~le~~L~~l~~~~~L 77 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS------W-NAITLIESTLPLKGAELDL 77 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC------h-hHHHHHHHHHHhhhhhcCe
Confidence 45789999999999999999999999999999999999999988888888533 2 25677777775421
Q ss_pred c---cCC-----C---CceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCc--eEEEEEEEEcCCCCCCChHHHH
Q 013389 319 G---RRA-----S---EGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERD--EALNIFYVTDEMGNPADPKIIE 385 (444)
Q Consensus 319 ~---rr~-----~---~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~--~a~d~FyV~d~~g~~v~~~~~~ 385 (444)
. ++. + ..+.++|.+.|||||+++||++|+++|+||..++..|++. ...+.|.+.-....|.+ ..++
T Consensus 78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~-~~~~ 156 (190)
T PRK11589 78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS-QDAA 156 (190)
T ss_pred EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC-CCHH
Confidence 0 121 1 1389999999999999999999999999999999999996 68888888765555643 3356
Q ss_pred HHHHHHhhc
Q 013389 386 AVRQKIGLS 394 (444)
Q Consensus 386 ~lr~~l~~~ 394 (444)
.|+++|.+.
T Consensus 157 ~L~~~l~~l 165 (190)
T PRK11589 157 NIEQAFKAL 165 (190)
T ss_pred HHHHHHHHH
Confidence 666665553
No 25
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.67 E-value=4.8e-16 Score=122.26 Aligned_cols=72 Identities=19% Similarity=0.334 Sum_probs=67.7
Q ss_pred EEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEE--ecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc
Q 013389 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATIN--TAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR 320 (444)
Q Consensus 248 tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~--T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r 320 (444)
|+|+|.|+|||||||+|+++|.++|++|+.|+|. |.|+++.|+||| +.+|.++.++++++.|+++|.++++.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMVC 74 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999 999999999999 78898998888899999999988753
No 26
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.65 E-value=1.4e-15 Score=120.08 Aligned_cols=74 Identities=68% Similarity=1.114 Sum_probs=68.3
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcC
Q 013389 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG 190 (444)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~ 190 (444)
|.|+|+++||||||++|+++|+.+||||++|+++|.++++.|+|||+|+..|.++.+++++++|++.|.++|.|
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~g 74 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLRG 74 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999999999999999999999999999999952277787889999999999999875
No 27
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.62 E-value=3.4e-15 Score=117.53 Aligned_cols=72 Identities=26% Similarity=0.464 Sum_probs=66.0
Q ss_pred ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (444)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL 188 (444)
.++|+|+++||||||++++++|+.+|+||.+|+|+|+ ++++.|+|||+++ .|.++.++++++++++.|.++|
T Consensus 1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~-~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP-DGEPIGERERLARIREALEDAL 73 (73)
T ss_pred CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC-CCCCCChHHHHHHHHHHHHhhC
Confidence 3689999999999999999999999999999999998 6999999999995 7777777899999999998865
No 28
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.59 E-value=2.2e-14 Score=133.07 Aligned_cols=144 Identities=14% Similarity=0.148 Sum_probs=109.8
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccC---C
Q 013389 32 CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY---G 108 (444)
Q Consensus 32 ~~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~---~ 108 (444)
+.+..+|++.|+|||||++.++++|+++||||.+++++..+|.|.-++.|.. +|..+..|+.+|..... .
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~-------~~~~~~~le~~L~~l~~~~~L 77 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG-------SWNAITLIESTLPLKGAELDL 77 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC-------ChhHHHHHHHHHHhhhhhcCe
Confidence 5678999999999999999999999999999999999999998876777743 25566778877765431 1
Q ss_pred -----CC----CC-CCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCC------eEEEEEEEEcCCCCCCCC
Q 013389 109 -----RS----NS-FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG------RIASLIYVKDCNSGSPIE 172 (444)
Q Consensus 109 -----~~----~~-~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~------~~~dvf~V~d~~~g~~i~ 172 (444)
++ .. ....+.++|+|.||||+.+++|++|+++|+||.+.+..|.+. .+...+.|.-| .+..
T Consensus 78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP-~~~~-- 154 (190)
T PRK11589 78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSP-ASQD-- 154 (190)
T ss_pred EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcC-CCCC--
Confidence 21 11 122489999999999999999999999999999999988652 44555666654 2322
Q ss_pred ChHHHHHHHHHHHHHhc
Q 013389 173 DSQQIDRIEARLRNVLK 189 (444)
Q Consensus 173 ~~~r~~~i~~~L~~vL~ 189 (444)
.+.++.+|.+...
T Consensus 155 ----~~~L~~~l~~l~~ 167 (190)
T PRK11589 155 ----AANIEQAFKALCT 167 (190)
T ss_pred ----HHHHHHHHHHHHH
Confidence 3567777776444
No 29
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.58 E-value=1.3e-14 Score=114.52 Aligned_cols=72 Identities=24% Similarity=0.346 Sum_probs=67.4
Q ss_pred EEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCC-CCCCCCHHHHHHHHHHHHHHhc
Q 013389 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHID-GTPISSEPERQRVIQCLEAAVG 319 (444)
Q Consensus 248 tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~-g~~l~~~~~~~~l~~~L~~al~ 319 (444)
|+|+|.++||||||++|+++|+++|+||++|+|+|.++++.|+|+|.+++ |.++.+++++++|++.|.++|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999999988 8888787789999999988764
No 30
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.57 E-value=2e-14 Score=113.18 Aligned_cols=72 Identities=25% Similarity=0.312 Sum_probs=65.9
Q ss_pred eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec-CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Q 013389 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA-GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV 318 (444)
Q Consensus 247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al 318 (444)
++.|+|.++||||||++++++|+.+|+||++|+|.|. ++++.|+|+|++.+|.++.++++++++++.|.++|
T Consensus 1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 3689999999999999999999999999999999998 68999999999999998877778999999987754
No 31
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.55 E-value=5.6e-14 Score=111.54 Aligned_cols=71 Identities=31% Similarity=0.466 Sum_probs=64.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-eCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcC
Q 013389 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG 190 (444)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~ 190 (444)
.++|+++||||||++++++|+.+|+||.+|+|.| .++++.|+|||+|+ .|. ..++++++++++.|.++|..
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence 6899999999999999999999999999999997 78999999999995 555 44678999999999998864
No 32
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.53 E-value=7.5e-14 Score=110.81 Aligned_cols=70 Identities=24% Similarity=0.439 Sum_probs=63.5
Q ss_pred EEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEe-cCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhc
Q 013389 249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINT-AGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVG 319 (444)
Q Consensus 249 vv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T-~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~ 319 (444)
+++|+|+||||||++++++|+++|+||++|+|+| .++++.|+|||++++|. ..++++++++++.|.++|.
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLG 72 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHc
Confidence 6899999999999999999999999999999997 78999999999998777 4556689999999988874
No 33
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.49 E-value=8.7e-14 Score=123.99 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=118.3
Q ss_pred CCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH-----h
Q 013389 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA-----V 318 (444)
Q Consensus 244 ~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a-----l 318 (444)
..+|.+|++.++||||+...+++...++||||.++|++..|+.+.-+..|..+ |+ ...+|++.|... |
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs------~d-av~~le~~l~~l~~~~~L 74 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGS------WD-AVTLLEATLPLLGAELDL 74 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeC------HH-HHHHHHHHhhcccccCCe
Confidence 35689999999999999999999999999999999999999988877777643 33 577888887532 1
Q ss_pred ----ccC-------CCCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCce--EEEEEEEEcCCCCCCChHHHH
Q 013389 319 ----GRR-------ASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDE--ALNIFYVTDEMGNPADPKIIE 385 (444)
Q Consensus 319 ----~rr-------~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~--a~d~FyV~d~~g~~v~~~~~~ 385 (444)
.|. .+..+.++|.+.|||||+.++|++|.++|+||......|+-.. ....|.+.-..+.|++ ..+.
T Consensus 75 ~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~-~~i~ 153 (176)
T COG2716 75 LVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN-LSIS 153 (176)
T ss_pred EEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc-CcHH
Confidence 111 1225899999999999999999999999999999999998654 7788999766788876 5568
Q ss_pred HHHHHHhhcc
Q 013389 386 AVRQKIGLSN 395 (444)
Q Consensus 386 ~lr~~l~~~~ 395 (444)
.|+++|.+.+
T Consensus 154 ~l~~~f~al~ 163 (176)
T COG2716 154 ALRDAFEALC 163 (176)
T ss_pred HHHHHHHHHH
Confidence 8888887754
No 34
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.39 E-value=3.3e-12 Score=100.26 Aligned_cols=72 Identities=72% Similarity=1.040 Sum_probs=66.4
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccc
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNL 396 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~ 396 (444)
++.++|.++||||+|++|+.+|+++|+||.+|.+.|.++.+.|+|+|+|.+|.+++++..+++++.|+.++|
T Consensus 1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~~~~~ 72 (72)
T cd04926 1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEIGPACL 72 (72)
T ss_pred CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHhccccC
Confidence 468999999999999999999999999999999999988999999999999888866788999999997654
No 35
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.33 E-value=1.3e-11 Score=96.78 Aligned_cols=68 Identities=32% Similarity=0.531 Sum_probs=61.4
Q ss_pred ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHH
Q 013389 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLR 185 (444)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~ 185 (444)
.++|+|.++||||+|++|+++|+.+|+||.+|.++|.++++.|+|+|+++ ++.++ +++++++|++.|-
T Consensus 1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~-~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA-NGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECC-CCCcC-CHHHHHHHHHHhc
Confidence 36899999999999999999999999999999999998899999999995 67777 6788888888775
No 36
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.32 E-value=6.4e-12 Score=112.15 Aligned_cols=146 Identities=14% Similarity=0.178 Sum_probs=111.2
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC---
Q 013389 32 CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG--- 108 (444)
Q Consensus 32 ~~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~--- 108 (444)
.+++.+|++.++||||+...++++.+++||||.+++++..|+.|.-+..+. | +|+..+.+|++|....+.
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis---g----s~dav~~le~~l~~l~~~~~L 74 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS---G----SWDAVTLLEATLPLLGAELDL 74 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe---e----CHHHHHHHHHHhhcccccCCe
Confidence 456799999999999999999999999999999999999999887565555 4 588899999999876541
Q ss_pred -----CC-----CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee--CCeEEEEEEEEcCCCCCCCCChHH
Q 013389 109 -----RS-----NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQ 176 (444)
Q Consensus 109 -----~~-----~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~--~~~~~dvf~V~d~~~g~~i~~~~r 176 (444)
|+ ......+.+.|.+.||||++.++|++|..+|+||++....|. .+--.-.|...-. -.-|. --.
T Consensus 75 ~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it-~~lPa--~~~ 151 (176)
T COG2716 75 LVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQIT-ARLPA--NLS 151 (176)
T ss_pred EEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhh-ccCCC--cCc
Confidence 32 344567899999999999999999999999999999888874 2222233443331 12222 123
Q ss_pred HHHHHHHHHHH
Q 013389 177 IDRIEARLRNV 187 (444)
Q Consensus 177 ~~~i~~~L~~v 187 (444)
...|++++...
T Consensus 152 i~~l~~~f~al 162 (176)
T COG2716 152 ISALRDAFEAL 162 (176)
T ss_pred HHHHHHHHHHH
Confidence 45677776653
No 37
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.30 E-value=1.9e-11 Score=94.36 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=56.4
Q ss_pred EEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec-CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Q 013389 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA-GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV 318 (444)
Q Consensus 248 tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al 318 (444)
..|.|+++||||||++++++|+.+|+||++|+|.|. +|++.|+|+|.+.+|. +.+.|+++|+++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~------~~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG------ETAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc------chHHHHHHHHHhh
Confidence 478999999999999999999999999999999975 6899999999988774 3456777776665
No 38
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.27 E-value=3.6e-11 Score=92.83 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=49.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEEeCCCC
Q 013389 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SDGRFFMDVFHVTDLNGN 87 (444)
Q Consensus 36 t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~-t~~g~~~dvF~V~d~~g~ 87 (444)
.+|.|+++||||||++++++|+.+|+||++|+|+ +.+|+++|+|+|.+++|.
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~ 54 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG 54 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc
Confidence 4789999999999999999999999999999997 589999999999999884
No 39
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.25 E-value=7e-11 Score=91.51 Aligned_cols=70 Identities=40% Similarity=0.605 Sum_probs=63.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (444)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL 188 (444)
|.|.|.++|+||+|++|+++|+++++||.++++.|.++++.|+|++.++ .|.++ +.+++++|++.|.+++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~-~~~~~-~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA-DGQPL-DPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC-CCCcC-CHHHHHHHHHHHHhhC
Confidence 5789999999999999999999999999999999988899999999995 67774 6789999999998764
No 40
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.22 E-value=1.2e-10 Score=90.24 Aligned_cols=70 Identities=31% Similarity=0.489 Sum_probs=63.7
Q ss_pred EEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Q 013389 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV 318 (444)
Q Consensus 248 tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al 318 (444)
|.|.|.++||||+|++++++|.+++++|.++++.+.++.+.+.|++.+.+|.+. +++++++|+++|..+|
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~-~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPL-DPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999999999998889999999999999884 4568999999997653
No 41
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.21 E-value=1.2e-10 Score=126.99 Aligned_cols=116 Identities=18% Similarity=0.207 Sum_probs=99.4
Q ss_pred EEEEEEc-cCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC-----
Q 013389 248 SVVNVQC-KDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR----- 321 (444)
Q Consensus 248 tvv~V~~-~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr----- 321 (444)
-.++|.. +|+||+|.+++++|+.++++|.+|++.+ +|.+..+|.|+...|.+.+. ..+++.+..++.+.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 621 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDP----QEFLQAYKSGVYSELPDPA 621 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCCh----HHHHHHHHHhhcCCCCccc
Confidence 4667777 9999999999999999999999999999 78888999999888876543 46666666655432
Q ss_pred -C-CC----ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEE
Q 013389 322 -A-SE----GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVT 372 (444)
Q Consensus 322 -~-~~----~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~ 372 (444)
. +. +.++||++.||+|+|+.|+++|. .|..|+++|.|..++|+||+.
T Consensus 622 ~~~~~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~ 674 (693)
T PRK00227 622 PGITATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK 674 (693)
T ss_pred CCCCceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec
Confidence 1 11 57999999999999999999999 899999999999999999997
No 42
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.13 E-value=5.7e-10 Score=121.80 Aligned_cols=141 Identities=16% Similarity=0.135 Sum_probs=116.9
Q ss_pred EEEEEEe-CCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC----CC
Q 013389 36 TLVKVDS-ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG----RS 110 (444)
Q Consensus 36 t~V~v~~-~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~----~~ 110 (444)
-.|+|.. +|++|+|.+++++|+.++++|..|++.+ +|.++..|.|....|.++.+..+.+.++.++.+..+. +|
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT 625 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence 4677777 9999999999999999999999999999 6666789999999998887777778888877766432 12
Q ss_pred CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcC
Q 013389 111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG 190 (444)
Q Consensus 111 ~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~ 190 (444)
......++++|.+.||||+|+.++++|. +|.+|++.|.+..++|+||+.++ . + ...+++.+..+|.+
T Consensus 626 ~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~~---~---~---r~~~~~~~~~~~~~ 692 (693)
T PRK00227 626 ATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKPG---F---D---RATVERDVTRVLAG 692 (693)
T ss_pred ceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecCc---c---c---HHHHHHHHHHHHhc
Confidence 2222348999999999999999999999 89999999999999999999852 1 1 36788888888765
No 43
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.92 E-value=1.3e-08 Score=78.20 Aligned_cols=70 Identities=37% Similarity=0.642 Sum_probs=61.1
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (444)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL 188 (444)
+.|.|.++|+||+|++|+++|+.+|++|.++.+.+.+++..+.|++.++ .+.++ ++++++.|++.|.+++
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~~~~l~~~l~~~~ 70 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRPL-DPERIARLEEALEDAL 70 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCcC-CHHHHHHHHHHHHhhC
Confidence 4688999999999999999999999999999999987788899999985 55553 5689999999987653
No 44
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.91 E-value=1.4e-08 Score=78.08 Aligned_cols=69 Identities=38% Similarity=0.558 Sum_probs=61.0
Q ss_pred EEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 013389 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA 317 (444)
Q Consensus 248 tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a 317 (444)
+.|.|.++|+||+|++++++|+++|++|.++.+.+.+++..+.|++..+++... +++++++|++.|..+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL-DPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhh
Confidence 368899999999999999999999999999999998779999999998887763 456889999988764
No 45
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.73 E-value=4.4e-08 Score=72.82 Aligned_cols=60 Identities=17% Similarity=0.310 Sum_probs=53.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHH
Q 013389 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVI 95 (444)
Q Consensus 36 t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~ 95 (444)
++|+|.+||+.||-.++++++-+.||+|.+++++|||.|+..+|+|.........+|..+
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lL 60 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLL 60 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHH
Confidence 479999999999999999999999999999999999999999999998655445677653
No 46
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.62 E-value=3.6e-07 Score=72.36 Aligned_cols=66 Identities=23% Similarity=0.462 Sum_probs=55.0
Q ss_pred ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (444)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~ 189 (444)
+..|++.|+||||+++.++++|+++||||.+.+..+.++++...+.|.-+ ++..++++++|.+...
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~~ 67 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELAE 67 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999888763 3466788888887543
No 47
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.57 E-value=5.6e-07 Score=71.26 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=52.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhc
Q 013389 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETI 105 (444)
Q Consensus 35 ~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~ 105 (444)
..+|++.|+||||+++.++++|+++||||.++++.+.+|.|.-.+.|.-+ |...+.++++|...
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999998888888764 44667777777653
No 48
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.56 E-value=1.4e-06 Score=73.18 Aligned_cols=114 Identities=19% Similarity=0.210 Sum_probs=85.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCCCCCCC
Q 013389 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNG 115 (444)
Q Consensus 36 t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~~~~~~ 115 (444)
-+|.|+..||||-|+.++..|...|+||..-.|.-.+.+-...+.|.++ +...+ +|....- ....
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-------d~A~~----~Lee~gF----~Vr~ 68 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-------DEAHS----VLEEAGF----TVRE 68 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-------HHHHH----HHHHCCc----EEEe
Confidence 4789999999999999999999999999999887666665655555442 22333 4433321 1123
Q ss_pred ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC-CeEEEEEEEEc
Q 013389 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD 164 (444)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~-~~~~dvf~V~d 164 (444)
.-++-|...|+||-|++|+.+|.++++|+..+..+++. ..+.-+|.+.|
T Consensus 69 ~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed 118 (142)
T COG4747 69 TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED 118 (142)
T ss_pred eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence 45778889999999999999999999999999999975 45555555444
No 49
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.41 E-value=1.4e-06 Score=69.15 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=43.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEe
Q 013389 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTD 83 (444)
Q Consensus 36 t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d 83 (444)
.+|++.|+|||||++.++++|+++|+||.+++.+..+|+|.-++.+..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~ 49 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG 49 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe
Confidence 689999999999999999999999999999999998888866666654
No 50
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.41 E-value=1.9e-06 Score=65.30 Aligned_cols=49 Identities=29% Similarity=0.272 Sum_probs=42.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCC--eEEEEEEEEeC
Q 013389 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGR--FFMDVFHVTDL 84 (444)
Q Consensus 36 t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g--~~~dvF~V~d~ 84 (444)
+.|.|.++||||+|++++++|+++|+||..+++.+.++ +.+.++.+.+.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~ 51 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE 51 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC
Confidence 57899999999999999999999999999999987554 77766776664
No 51
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.39 E-value=3.5e-06 Score=63.79 Aligned_cols=62 Identities=19% Similarity=0.333 Sum_probs=48.1
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCC--eEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHH
Q 013389 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG--RIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV 187 (444)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~--~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~v 187 (444)
|.|.|.++||||+|++++.+|+++|+||..+.+.+..+ .....+.+.+ ....+.+.++|+++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHcc
Confidence 57899999999999999999999999999999999766 3434444444 23456667766654
No 52
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.31 E-value=4.3e-06 Score=66.36 Aligned_cols=62 Identities=11% Similarity=0.186 Sum_probs=49.4
Q ss_pred EEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEA 316 (444)
Q Consensus 248 tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~ 316 (444)
.+|++.|+||||+.++|+..|+++|+||.+++.++.++++.-...+.-+ . . ..+.|++.|.+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~---~-~~~~l~~~l~~ 63 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---W---D-AIAKLEAALPG 63 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---c---c-cHHHHHHHHHH
Confidence 6899999999999999999999999999999999988877655555432 1 1 24566666655
No 53
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.28 E-value=3.4e-06 Score=62.91 Aligned_cols=66 Identities=20% Similarity=0.322 Sum_probs=55.5
Q ss_pred EEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEA 316 (444)
Q Consensus 248 tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~ 316 (444)
++|+|.|+|+.||=.|+++++.+.|++|..+.++|.|.+++-+|+|.... ..+. -+|..|++.|..
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~-~~~~--~rW~lLK~RL~~ 66 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRP-PSIK--VRWDLLKNRLMS 66 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCC-CCCc--ccHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999998543 2221 256677777654
No 54
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.27 E-value=3.9e-06 Score=66.12 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=51.3
Q ss_pred EEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Q 013389 249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA 317 (444)
Q Consensus 249 vv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a 317 (444)
+|+|.|+||||++++++++|+++|+||.+.+..+.++++.-.|.+.-+++. ..+.|++.|++.
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~------~~~~l~~~l~~l 63 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSA------DSEALLKDLLFK 63 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCC------CHHHHHHHHHHH
Confidence 479999999999999999999999999999988888887777888755442 245666666553
No 55
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.27 E-value=3e-06 Score=66.76 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=42.6
Q ss_pred EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCC
Q 013389 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMG 376 (444)
Q Consensus 328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g 376 (444)
+.|.+.||||++++||++|+++|+||...+-++.++.-.-.|.+.-+.+
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~ 50 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS 50 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC
Confidence 7899999999999999999999999999999999887666777764433
No 56
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.03 E-value=0.00013 Score=61.52 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=88.1
Q ss_pred EEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEE
Q 013389 249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRL 328 (444)
Q Consensus 249 vv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~~~~~~l 328 (444)
+|+|...++||=|+.++.+|.+.|+||..-.|.-.|+.-.-.+.|.++ + + -.+.|+++ .-.....-++
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-------d-~---A~~~Lee~-gF~Vr~~dVl 72 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-------D-E---AHSVLEEA-GFTVRETDVL 72 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-------H-H---HHHHHHHC-CcEEEeeeEE
Confidence 678899999999999999999999999999998887765555555332 1 1 12334332 0011223467
Q ss_pred EEEecCCCchHHHHHHHHHHCCceEEEEEeec-CCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccc
Q 013389 329 ELCMEDRQGLLADVTRTFRENGLNVTRAEVST-ERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNL 396 (444)
Q Consensus 329 ev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T-~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~ 396 (444)
-|...|+||=|+.|..+|.+.++|+..+-.-+ ..++|.=.|-+. .++...+.|.++-.
T Consensus 73 aVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~e----------d~d~~~~aLed~gi 131 (142)
T COG4747 73 AVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVE----------DIDRAIKALEDAGI 131 (142)
T ss_pred EEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhh----------HHHHHHHHHHHcCC
Confidence 78899999999999999999999998887643 445566555443 34455555555443
No 57
>PRK07431 aspartate kinase; Provisional
Probab=98.02 E-value=0.0047 Score=67.44 Aligned_cols=287 Identities=15% Similarity=0.194 Sum_probs=159.1
Q ss_pred eCCCccHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCC-CCCCCceEE
Q 013389 42 SARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS-NSFNGLTAL 119 (444)
Q Consensus 42 ~~dr~Gll~~i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~-~~~~~~t~i 119 (444)
-.+++|+++++...|++.|.+|.-...++ ..+..-..|.|.+.+- ....+.|++ +........ ....+...|
T Consensus 278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~~-l~~~~~~~~i~~~~~~a~I 351 (587)
T PRK07431 278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAEA-IAPALGGAEVLVETNVAKL 351 (587)
T ss_pred CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHHH-HHHHcCCCcEEEeCCeEEE
Confidence 36789999999999999999998776543 2222222455543211 112222332 221110000 123456788
Q ss_pred EEEEc---CCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcCCCcccc
Q 013389 120 ELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRS 196 (444)
Q Consensus 120 ~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~~~~~~~ 196 (444)
.|.|. +.||+++++..+|+..+++|.... +. ...-.|.|.. +..++.-+.|.+.+.-+.. .
T Consensus 352 svvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sS--e~~Is~vv~~----------~d~~~av~~Lh~~f~~~~~-~- 415 (587)
T PRK07431 352 SISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TS--EVKVSCVIDA----------EDGDKALRAVCEAFELEDS-Q- 415 (587)
T ss_pred EEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cC--CCEEEEEEcH----------HHHHHHHHHHHHHhccCCc-c-
Confidence 88886 799999999999999999997544 21 1212333332 1234555667777754221 0
Q ss_pred cchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEE-ccCCccHHHHHHHHHHhCCeeE
Q 013389 197 AKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQ-CKDRTKLLFDVVCTLTDMEYVV 275 (444)
Q Consensus 197 ~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~-~~DRpGLL~~i~~~L~~~~~nI 275 (444)
..+..++. ..+ ..+.--|. ..++...|++. .++.||+++++...|++++++|
T Consensus 416 -------------~~~~~~~~---~~~---------~~~v~gIa--~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~i 468 (587)
T PRK07431 416 -------------IEINPTAS---GQD---------EPEVRGVA--LDRNQAQLAIRNVPDRPGMAASIFGALAEANISV 468 (587)
T ss_pred -------------cccCcccc---CCC---------CCcEEEEE--ccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeE
Confidence 01111110 011 11111122 13455666665 6788999999999999999999
Q ss_pred EEEEEEe-cC--CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc----CCCCceEEEEEec---CCCchHHHHHHH
Q 013389 276 FHATINT-AG--ERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR----RASEGVRLELCME---DRQGLLADVTRT 345 (444)
Q Consensus 276 ~~A~I~T-~g--~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r----r~~~~~~lev~~~---DRpGLL~~Itr~ 345 (444)
..-.-.. .+ +...-.|.+...+ -..+.++.+.|.+.+.. -...-..|.|.+. .+||+++++.++
T Consensus 469 d~i~~~~~~~~~~~~~isf~v~~~~------~~~~~~~l~~l~~~~~~~~i~~~~~va~VSvVG~gm~~~~gv~~ri~~a 542 (587)
T PRK07431 469 DMIVQSQRCRSDGTRDISFTVPKED------REAAQKVLRELAKQLPGAEVEDGPAIAKVSIVGAGMPGTPGVAARMFRA 542 (587)
T ss_pred EEEEecCCCCCCCceeEEEEEcHHH------HHHHHHHHHHHHHhcCCceEEEeCCeEEEEEECCCccCCcCHHHHHHHH
Confidence 8753321 12 2233345554311 11223333333322211 0122356888876 889999999999
Q ss_pred HHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHH
Q 013389 346 FRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKI 391 (444)
Q Consensus 346 l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l 391 (444)
|.+.|++|.... | ...+..++.+.... ++.+..|.++|
T Consensus 543 L~~~~I~v~~i~--~---S~~~Is~vV~~~~~---~~av~~Lh~~f 580 (587)
T PRK07431 543 LADAGINIEMIA--T---SEIRTSCVVAEDDG---VKALQAVHQAF 580 (587)
T ss_pred HHHCCCcEEEee--c---cceEEEEEEeHHHH---HHHHHHHHHHh
Confidence 999999996655 2 44455444332100 13455555555
No 58
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.02 E-value=9.8e-06 Score=63.55 Aligned_cols=65 Identities=22% Similarity=0.249 Sum_probs=46.0
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389 327 RLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393 (444)
Q Consensus 327 ~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~ 393 (444)
+|.+.++||||++++||++|+++|+||...+..+.. ....|++.-.-..|-.+...+.|+++|..
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~l~~~l~~ 65 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDP--DSGRFFMRVEFELEGFDLSREALEAAFAP 65 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecC--CCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 378999999999999999999999999999998743 22358775432233111135666665554
No 59
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.96 E-value=2.4e-05 Score=63.56 Aligned_cols=47 Identities=19% Similarity=0.233 Sum_probs=40.4
Q ss_pred eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEE
Q 013389 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVT 372 (444)
Q Consensus 326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~ 372 (444)
+.+.+.++||||++++||++|+++|+||...+..|.+++..-.+.+.
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~ 48 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVD 48 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEE
Confidence 57899999999999999999999999999999999876554444444
No 60
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.96 E-value=2.7e-05 Score=63.27 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=49.7
Q ss_pred EEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCC-CCCCCCHHHHHHHHHHHHH
Q 013389 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHID-GTPISSEPERQRVIQCLEA 316 (444)
Q Consensus 248 tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~-g~~l~~~~~~~~l~~~L~~ 316 (444)
.+|++.|+||||++++++++|+++|+||.+.+-.+.++.+.-.+.+.-+. +. ..+.|++.|.+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~------~~~~L~~~l~~ 65 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNL------DFAELQEELEE 65 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCC------CHHHHHHHHHH
Confidence 47899999999999999999999999999999998887776666666442 11 24566666654
No 61
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.94 E-value=2.3e-05 Score=62.28 Aligned_cols=65 Identities=20% Similarity=0.362 Sum_probs=47.0
Q ss_pred EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCce--EEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDE--ALNIFYVTDEMGNPADPKIIEAVRQKIGL 393 (444)
Q Consensus 328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~--a~d~FyV~d~~g~~v~~~~~~~lr~~l~~ 393 (444)
|.+.++||||++++||++|+++|+||...+..|.+.. ..+.|+++-.-..|- ....++++++|..
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~l~~~l~~ 68 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-GTDLDALREELEE 68 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-CCCHHHHHHHHHH
Confidence 6899999999999999999999999999999988732 446666543322331 1234555555544
No 62
>PRK00194 hypothetical protein; Validated
Probab=97.93 E-value=2.7e-05 Score=63.37 Aligned_cols=66 Identities=21% Similarity=0.403 Sum_probs=50.8
Q ss_pred ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHH
Q 013389 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV 187 (444)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~v 187 (444)
.+.+++.|+||||++++++++|+++|+||.+....+.++.....+.+.-+ +.+. + .+.+++.|.+.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~-~---~~~l~~~l~~l 68 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKK-D---FAELKEELEEL 68 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCC-C---HHHHHHHHHHH
Confidence 57899999999999999999999999999999998887777766665442 2122 2 25566666653
No 63
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.90 E-value=7.5e-05 Score=59.25 Aligned_cols=62 Identities=19% Similarity=0.151 Sum_probs=45.9
Q ss_pred EEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecC------CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389 249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG------ERAYLEFYIRHIDGTPISSEPERQRVIQCLEA 316 (444)
Q Consensus 249 vv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g------~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~ 316 (444)
+|+|.|+||||++++|+..|+++|+||.+.+..+.+ +.+.-.+.+.-+++. ..+++++.|++
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~------~~~~l~~~l~~ 68 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGT------DLDALREELEE 68 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCC------CHHHHHHHHHH
Confidence 478999999999999999999999999999998876 444444444433221 24566666554
No 64
>PRK00194 hypothetical protein; Validated
Probab=97.88 E-value=4e-05 Score=62.41 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=37.7
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEE
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALN 367 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d 367 (444)
.+.+.+.++||||++++|+++|+++|+||...+-.+.++...-
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~ 45 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTM 45 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEE
Confidence 3689999999999999999999999999999999887654333
No 65
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.87 E-value=8.9e-05 Score=58.05 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=32.8
Q ss_pred EEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec
Q 013389 249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA 283 (444)
Q Consensus 249 vv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~ 283 (444)
+|+|.|+||||++++|++.|+++|+||.+.+..+.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~ 35 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD 35 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec
Confidence 47999999999999999999999999999999873
No 66
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.76 E-value=0.0002 Score=56.88 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=48.1
Q ss_pred ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee--CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~--~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
.+.|.|.+.||||+|++|+.++++.|+||.+..+.+. ++.+...|.+.-. +.+.++.|-+.|++
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHCT
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHHC
Confidence 4789999999999999999999999999999999994 5666666666542 44566666666553
No 67
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.70 E-value=0.00093 Score=66.07 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=70.8
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC--CCCC
Q 013389 37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD--GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG--RSNS 112 (444)
Q Consensus 37 ~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~--~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~--~~~~ 112 (444)
+|+|.|+|||||++.++++|+++|+||.+.+.+.+ +|+|.-.+.+.-+ +...+-+++.+.+++++...... +-..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~~~~~l~~~l~~~~~~~~~l~i~l~~ 80 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRLEESSLLAAFKSALAEKFEMTWELIL 80 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHHhCCEEEEec
Confidence 68999999999999999999999999999999874 4766545555543 21222233434444323222111 0011
Q ss_pred CCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe
Q 013389 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT 151 (444)
Q Consensus 113 ~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T 151 (444)
......|-|.+.-+..-|..|......-.+++.=+-+.+
T Consensus 81 ~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~vis 119 (280)
T TIGR00655 81 ADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVIS 119 (280)
T ss_pred CCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEE
Confidence 112234555555556677888888877766655444444
No 68
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.65 E-value=0.00088 Score=66.52 Aligned_cols=116 Identities=9% Similarity=0.055 Sum_probs=68.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE--e-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCC-
Q 013389 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS--S-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGR- 109 (444)
Q Consensus 34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~--t-~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~- 109 (444)
...+|+|.|+|||||++.++++|+++|+||.+.+.+ + .+.+|| .+.+.+......+...+.+.+++ +.......
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm-~i~~~~~~~~~~~~~~l~~~l~~-l~~~l~l~~ 85 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFM-RVSFHAQSAEAASVDTFRQEFQP-VAEKFDMQW 85 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEE-EEEEEcCCCCCCCHHHHHHHHHH-HHHHhCCeE
Confidence 345899999999999999999999999999999996 4 344444 33333321112222223333333 11111110
Q ss_pred C-CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe
Q 013389 110 S-NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT 151 (444)
Q Consensus 110 ~-~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T 151 (444)
. ........|-|.+.-+..-|..+-.....-.+++.=+-+.+
T Consensus 86 ~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~vis 128 (289)
T PRK13010 86 AIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIIS 128 (289)
T ss_pred EEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEE
Confidence 0 11222334555555556677778888777777665555554
No 69
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.53 E-value=0.0008 Score=53.33 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=48.6
Q ss_pred eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec--CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 013389 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLEFYIRHIDGTPISSEPERQRVIQCLE 315 (444)
Q Consensus 247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~ 315 (444)
.+.|.|.+.||||+|++|+.+++++|+||.+..+.+. ++.+.-.|.|.=. +.+++++|.+.|+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~------d~~~L~~ii~~L~ 70 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK------DLEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES------SHHHHHHHHHHHC
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC------CHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999985 5677777777533 3346777777764
No 70
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.52 E-value=0.0019 Score=64.14 Aligned_cols=107 Identities=10% Similarity=0.136 Sum_probs=64.2
Q ss_pred eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEE--ecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH---hc--
Q 013389 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATIN--TAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA---VG-- 319 (444)
Q Consensus 247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~--T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a---l~-- 319 (444)
..+|+|.|+||||+.+.|+..|+++|+||.+.+-. +..+.+.-.+.+.......+ ..+.|++.|.+. +.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~----~~~~l~~~l~~l~~~l~l~ 84 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAA----SVDTFRQEFQPVAEKFDMQ 84 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCC----CHHHHHHHHHHHHHHhCCe
Confidence 46899999999999999999999999999999987 33343332222322111112 244566655442 21
Q ss_pred ---cCCCCceEEEEEecCCCchHHHHHHHHHHCCceEEEEE
Q 013389 320 ---RRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAE 357 (444)
Q Consensus 320 ---rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~ 357 (444)
+...+...+-|..--+..-|.+|-....+..++..-+-
T Consensus 85 ~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~ 125 (289)
T PRK13010 85 WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVG 125 (289)
T ss_pred EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEE
Confidence 11222334445555555566666666666665544333
No 71
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.49 E-value=0.001 Score=51.59 Aligned_cols=61 Identities=18% Similarity=0.216 Sum_probs=46.5
Q ss_pred EEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 119 i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
|.|.+.||||+|++|+.++++.|+||.+....+. ++.+...|.+.-. +.+.++.+.+.|++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-------~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-------SEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-------CHHHHHHHHHHHhc
Confidence 6789999999999999999999999998888764 3555555555432 34666777776664
No 72
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.41 E-value=0.0043 Score=61.59 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=63.9
Q ss_pred CeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEe--cCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhc----
Q 013389 246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINT--AGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVG---- 319 (444)
Q Consensus 246 ~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T--~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~---- 319 (444)
...+|+|.|+||||++++|+.+|+++|+||.+.+..+ .++.+.-.+.+.- +..+. ..+.|++.|++.-+
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~~----~~~~L~~~L~~l~~~l~l 79 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLIF----NLETLRADFAALAEEFEM 79 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCCC----CHHHHHHHHHHHHHHhCC
Confidence 4678999999999999999999999999999999998 6775544444432 11111 25566666654311
Q ss_pred ----cCCCCceEEEEEecCCCchHHHHHHHHHHCCce
Q 013389 320 ----RRASEGVRLELCMEDRQGLLADVTRTFRENGLN 352 (444)
Q Consensus 320 ----rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~ 352 (444)
+..++..++-|.+--+---|..+-....+..++
T Consensus 80 ~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~ 116 (286)
T PRK06027 80 DWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELP 116 (286)
T ss_pred EEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCC
Confidence 111122334444444444555555555554443
No 73
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.40 E-value=0.00018 Score=58.18 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=42.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEe
Q 013389 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTD 83 (444)
Q Consensus 35 ~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d 83 (444)
..+|+|.++||||+.+.++++|+++|.||.+...+-..|||--.+.|.-
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~ 51 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDI 51 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcC
Confidence 4689999999999999999999999999999988888888765566654
No 74
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.39 E-value=0.0047 Score=61.34 Aligned_cols=113 Identities=11% Similarity=0.036 Sum_probs=70.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccC---C
Q 013389 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY---G 108 (444)
Q Consensus 34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~---~ 108 (444)
...+|+|.|+|||||+++++++|+++|+||.+.+.++ .+|.|.-.+.+.- +..+.. ++.|+++|..... .
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~~~----~~~L~~~L~~l~~~l~l 79 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLIFN----LETLRADFAALAEEFEM 79 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCCCC----HHHHHHHHHHHHHHhCC
Confidence 4678999999999999999999999999999999998 7776655555543 111111 3445555543321 1
Q ss_pred C-C-CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe
Q 013389 109 R-S-NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT 151 (444)
Q Consensus 109 ~-~-~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T 151 (444)
. . ........|-|.+.-+-.-|..+........++..=+-+.|
T Consensus 80 ~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~vis 124 (286)
T PRK06027 80 DWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVIS 124 (286)
T ss_pred EEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEE
Confidence 0 0 11112234444444445566667777777666555444555
No 75
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.38 E-value=0.0052 Score=60.78 Aligned_cols=105 Identities=14% Similarity=0.213 Sum_probs=69.2
Q ss_pred EEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec--CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH-H---hc---
Q 013389 249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLEFYIRHIDGTPISSEPERQRVIQCLEA-A---VG--- 319 (444)
Q Consensus 249 vv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~-a---l~--- 319 (444)
+|+|.|+||||+.+.|++.|+++|+||.+.+-+.. ++++.-.+.+.-+ +..+ ..+.|++.|.+ . +.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~----~~~~l~~~l~~~~~~~~~l~i 76 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRL----EESSLLAAFKSALAEKFEMTW 76 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCC----CHHHHHHHHHHHHHHHhCCEE
Confidence 68999999999999999999999999999998884 4666655555433 2222 24556666555 2 11
Q ss_pred --cCCCCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEe
Q 013389 320 --RRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEV 358 (444)
Q Consensus 320 --rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i 358 (444)
....+..++-|.+--+-.-|.+|-....+..++..-+-+
T Consensus 77 ~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~v 117 (280)
T TIGR00655 77 ELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALV 117 (280)
T ss_pred EEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEE
Confidence 011223455555556666777888887777665443333
No 76
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.37 E-value=0.00028 Score=57.07 Aligned_cols=68 Identities=19% Similarity=0.289 Sum_probs=51.7
Q ss_pred ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (444)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~ 189 (444)
...|+|.|.||||+.+.++++|+++|+||.+-.-.--.++....+.|.-+. .. .-...++++|.....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~--~~----~d~~~lr~~l~~~~~ 70 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISK--EV----VDFAALRDELAAEGK 70 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCCh--Hh----ccHHHHHHHHHHHHH
Confidence 468999999999999999999999999999877666678887777776531 11 123566776665544
No 77
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.26 E-value=0.0028 Score=49.16 Aligned_cols=61 Identities=10% Similarity=0.127 Sum_probs=47.4
Q ss_pred EEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec-CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389 250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA-GERAYLEFYIRHIDGTPISSEPERQRVIQCLEA 316 (444)
Q Consensus 250 v~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~ 316 (444)
+.|.+.||||+|++|+.++++.|.||.+....+. .+.+...|.+.-. +.++++++.+.|++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~------~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP------SEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC------CHHHHHHHHHHHhc
Confidence 6789999999999999999999999998888765 4666666666433 23467777777654
No 78
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.23 E-value=0.0077 Score=59.79 Aligned_cols=106 Identities=11% Similarity=0.167 Sum_probs=68.0
Q ss_pred eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec--CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH---hc--
Q 013389 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA---VG-- 319 (444)
Q Consensus 247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a---l~-- 319 (444)
..+|+|.|+||||+.+++++.|+++|+||.+.+-.+. ++.+.-.+.+.-+.+. ..+.|++.|.+. +.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~------~~~~L~~~L~~l~~~l~l~ 80 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL------DEDALRAGFAPIAARFGMQ 80 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC------CHHHHHHHHHHHHHHhCcE
Confidence 4689999999999999999999999999999988753 3455544555434332 245566655543 11
Q ss_pred ---cCCCCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEe
Q 013389 320 ---RRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEV 358 (444)
Q Consensus 320 ---rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i 358 (444)
+...+...|-|.+--+---|..+...+.+..++.+-+-+
T Consensus 81 i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~v 122 (286)
T PRK13011 81 WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGV 122 (286)
T ss_pred EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEE
Confidence 112223345555555666677777777766655444443
No 79
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.21 E-value=0.0029 Score=50.04 Aligned_cols=68 Identities=7% Similarity=0.152 Sum_probs=50.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHCCceEEEEEee-cCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013389 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVS-TERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVK 399 (444)
Q Consensus 326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~-T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~ 399 (444)
+.+.+...|+||+|++|+.+|+.+|.||.+..+. |..........+.. | ++..+++|.++|.+. .+|.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~--~---~~~~i~qi~kQL~KL-idV~ 71 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV--C---TENEATLLVSQLKKL-INVL 71 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE--C---CHHHHHHHHHHHhCC-cCEE
Confidence 4688999999999999999999999999999987 44333333333322 2 246788999998883 3443
No 80
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.17 E-value=0.0029 Score=50.24 Aligned_cols=66 Identities=20% Similarity=0.369 Sum_probs=47.0
Q ss_pred eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCc-eEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERD-EALNIFYVTDEMGNPADPKIIEAVRQKIGL 393 (444)
Q Consensus 326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~-~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~ 393 (444)
+.+.+...|+||.|++|...|+++|+||.+......+. ...=+||| |.+|. .+...+..+-+.|..
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~v-d~~~~-~~~~~~~~~l~~l~~ 68 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFI-DFEGH-IEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEE-EEECC-CCCHHHHHHHHHHHH
Confidence 35677889999999999999999999999998776543 45567777 34454 333444444444444
No 81
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.16 E-value=0.0038 Score=47.39 Aligned_cols=61 Identities=25% Similarity=0.373 Sum_probs=42.0
Q ss_pred EEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-----CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-----NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 119 i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-----~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
+.|..+|+||+|++|+.+|+++|+||.+...... .+.+...|.+.-. +.+.++.+.+.|.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-------GAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 3578899999999999999999999998876543 2333333433321 34555666666654
No 82
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.13 E-value=0.011 Score=58.70 Aligned_cols=111 Identities=9% Similarity=0.013 Sum_probs=69.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccC---CC
Q 013389 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY---GR 109 (444)
Q Consensus 35 ~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~---~~ 109 (444)
..+|+|.|+|||||+++++++|+++|+||.+.+.++ .++.|.-.+.+..+.+ .+ ...|+++|..... ..
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~--~~----~~~L~~~L~~l~~~l~l~ 80 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEG--LD----EDALRAGFAPIAARFGMQ 80 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCC--CC----HHHHHHHHHHHHHHhCcE
Confidence 467999999999999999999999999999999974 4555554555554433 11 2334444433211 10
Q ss_pred -C-CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe
Q 013389 110 -S-NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT 151 (444)
Q Consensus 110 -~-~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T 151 (444)
. ........|-|.+.-+..-|..+........++..=+-+.|
T Consensus 81 i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vis 124 (286)
T PRK13011 81 WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS 124 (286)
T ss_pred EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEE
Confidence 0 11111234555555566677778888777776655555555
No 83
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=97.11 E-value=0.0025 Score=57.55 Aligned_cols=70 Identities=23% Similarity=0.424 Sum_probs=52.7
Q ss_pred eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccc
Q 013389 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE 400 (444)
Q Consensus 326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~ 400 (444)
..+.|...|+||.|++|+.+|+++|+||.+..+...++...-.+.++- +| ++..+++|.++|.+. .+|.+
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V-~~---d~~~i~qi~kQl~Kl-i~V~~ 71 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVV-VG---DDKVLEQITKQLNKL-VDVIK 71 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEE-EC---CHHHHHHHHHHHhcC-ccEEE
Confidence 468899999999999999999999999999988766544333333331 13 357899999999984 34443
No 84
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.11 E-value=0.0038 Score=49.41 Aligned_cols=64 Identities=6% Similarity=0.112 Sum_probs=46.4
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-eCCeEE-EEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIA-SLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (444)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~~~~~-dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL 188 (444)
..|.+...|+||.|++|+++|+..|.||.+..+.- .+.... -++.+.. +++..+.|.++|.+..
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~--------~~~~i~qi~kQL~KLi 68 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC--------TENEATLLVSQLKKLI 68 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC--------CHHHHHHHHHHHhCCc
Confidence 46899999999999999999999999999988774 333332 2333322 2456677888777643
No 85
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.07 E-value=0.0021 Score=58.97 Aligned_cols=65 Identities=20% Similarity=0.385 Sum_probs=48.9
Q ss_pred eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013389 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLS 394 (444)
Q Consensus 326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~ 394 (444)
..+.|.+.|+||+|++||.+|+++|+||.+..+..........+.+.- |-++..+++|+++|.+.
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv----~~~~~~ieqL~kQL~KL 67 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVV----PGDDRTIEQLTKQLYKL 67 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEE----ECCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999753333333444432 22234478888888885
No 86
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.05 E-value=0.0031 Score=49.34 Aligned_cols=59 Identities=24% Similarity=0.419 Sum_probs=43.1
Q ss_pred EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
.|.|.+.||+|+|++|+.++++.|+||.+.++.+. +. ++++-. +.+.+.++.+-++|++
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~----i~l~i~-----v~~~~~L~~li~~L~~ 60 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR----IYLNFP-----TIEFEKLQTLMPEIRR 60 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce----EEEEeE-----ecCHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999775 33 222221 1134556666666654
No 87
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.02 E-value=0.0023 Score=46.97 Aligned_cols=46 Identities=17% Similarity=0.155 Sum_probs=38.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC-CeEEEEEEEEc
Q 013389 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD 164 (444)
Q Consensus 119 i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~-~~~~dvf~V~d 164 (444)
+.+..+|+||.|++++.+|.++|+||.+..+...+ +.....|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 35788999999999999999999999999988765 56666666654
No 88
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.95 E-value=0.0055 Score=56.24 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=48.3
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee--CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (444)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~--~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~ 189 (444)
..+.+.+.|+||+|++|+++|+.+|+||.+..+... .+.....+.+.. ++..++.|.++|.+...
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~--------~~~~ieqL~kQL~KLid 69 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG--------DDRTIEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC--------CHHHHHHHHHHHHHHhH
Confidence 478999999999999999999999999999998652 344434444332 22336788888887554
No 89
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.95 E-value=0.0074 Score=45.78 Aligned_cols=67 Identities=19% Similarity=0.173 Sum_probs=44.4
Q ss_pred EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC---ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccc
Q 013389 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER---DEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLK 397 (444)
Q Consensus 328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g---~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~ 397 (444)
+.|..+|+||+|++|+++|++.|++|......... ....-.++++-. . + +..+++.+.+.|......
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~-~-~-~~~~l~~l~~~l~~~g~~ 70 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLE-T-R-GAEHIEEIIAALREAGYD 70 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEE-e-C-CHHHHHHHHHHHHHcCCE
Confidence 45788999999999999999999999988876432 122222333211 1 1 235667777777664433
No 90
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.94 E-value=0.0056 Score=50.44 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=47.2
Q ss_pred CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC-Ce-EEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GR-IASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (444)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~-~~-~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL 188 (444)
....|.+...|+||+|++|+++|+..|.||.+..+--.. .. ..-++.+.+ ++.+++|.++|.+..
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~---------~~~i~Qi~kQL~KLi 73 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND---------DQRLEQMISQIEKLE 73 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC---------chHHHHHHHHHhCCc
Confidence 456799999999999999999999999999998776432 22 222332321 246778888888644
No 91
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.93 E-value=0.0037 Score=47.70 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=35.1
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCe
Q 013389 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGR 155 (444)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~ 155 (444)
..+.|..+|+||.|++|+.+|+++|+||.+..+...++.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~ 40 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF 40 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC
Confidence 468899999999999999999999999999998776554
No 92
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.92 E-value=0.0072 Score=46.06 Aligned_cols=45 Identities=24% Similarity=0.448 Sum_probs=37.9
Q ss_pred eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEE
Q 013389 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVT 372 (444)
Q Consensus 326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~ 372 (444)
..+.|...|+||.|++|+.+|.++|+||.+.-+...+++ .+|.+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~ 46 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI 46 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence 357889999999999999999999999999998776664 555553
No 93
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.90 E-value=0.005 Score=49.46 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=52.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcc
Q 013389 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSN 395 (444)
Q Consensus 326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~ 395 (444)
..+.+...|+||+|++|+-.|+.+|+||.+..+....+.....+-+.-..| ++..++++.++|.+.+
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~---d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ---DDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC---CHHHHHHHHHHHhCCc
Confidence 358889999999999999999999999999999866566555554432112 2467899999998843
No 94
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0036 Score=60.38 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=38.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEE
Q 013389 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFM 76 (444)
Q Consensus 34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~ 76 (444)
+..++++.|+|++||++.|++.|..+||||.++..++ .+|||+
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FF 50 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFF 50 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEE
Confidence 4679999999999999999999999999999999997 356665
No 95
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.87 E-value=0.0099 Score=44.93 Aligned_cols=62 Identities=21% Similarity=0.396 Sum_probs=45.8
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC-CceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389 327 RLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE-RDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393 (444)
Q Consensus 327 ~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~-g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~ 393 (444)
.+.+.+.|+||+|.+|+++|+++|++|......+. ++.....++..+. .+ ..++.+.++|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG----DD-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC----CH-HHHHHHHHHHhC
Confidence 47888999999999999999999999999998875 4333333333332 13 556777777765
No 96
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.84 E-value=0.0079 Score=45.27 Aligned_cols=44 Identities=23% Similarity=0.393 Sum_probs=37.9
Q ss_pred EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC--ceEEEEEEE
Q 013389 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER--DEALNIFYV 371 (444)
Q Consensus 328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g--~~a~d~FyV 371 (444)
+.+.+.|++|+|++|+++|++.|++|....+...+ +.+.-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67899999999999999999999999999998765 456556666
No 97
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.84 E-value=0.0095 Score=46.24 Aligned_cols=62 Identities=26% Similarity=0.367 Sum_probs=45.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCCChH-HHHHHHHHHHH
Q 013389 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQ-QIDRIEARLRN 186 (444)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~~~~-r~~~i~~~L~~ 186 (444)
.+.+.+.|+||++++|+.+|+++|+||......+. ++.+.-.|.+.-. +.+ .++.|.+.|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHhc
Confidence 57899999999999999999999999999876553 3444444555432 223 55666666664
No 98
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.83 E-value=0.0051 Score=48.09 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=43.0
Q ss_pred EEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389 249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEA 316 (444)
Q Consensus 249 vv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~ 316 (444)
.+.|.+.||+|+|++|+.++++.|+||.+..+.+. +... |-+.-. +.++++.+.+.|.+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~--l~i~v~------~~~~L~~li~~L~~ 60 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIY--LNFPTI------EFEKLQTLMPEIRR 60 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEE--EEeEec------CHHHHHHHHHHHhC
Confidence 47899999999999999999999999999998776 4422 222211 23356666666543
No 99
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.82 E-value=0.0061 Score=55.27 Aligned_cols=70 Identities=23% Similarity=0.432 Sum_probs=51.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccc
Q 013389 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE 400 (444)
Q Consensus 326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~ 400 (444)
..+.|...|+||.|++|+.+|+++|+||.+..+....+...-.+.++- .| ++..++++.++|.+. .+|.+
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V-~~---~~~~i~qi~kQl~KL-idV~~ 72 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVT-SG---DEQVIEQITKQLNKL-IDVLK 72 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEE-EC---CHHHHHHHHHHHhcc-ccEEE
Confidence 468899999999999999999999999999988654433333233321 12 357789999999884 34443
No 100
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.81 E-value=0.0039 Score=45.75 Aligned_cols=46 Identities=26% Similarity=0.488 Sum_probs=38.5
Q ss_pred EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC-ceEEEEEEEEc
Q 013389 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER-DEALNIFYVTD 373 (444)
Q Consensus 328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~FyV~d 373 (444)
+++...|+||.|.++++.|.++|+||....+.+.+ +++.-.|-+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46788999999999999999999999999987655 66777776643
No 101
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.79 E-value=0.01 Score=45.30 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=44.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC--ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013389 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER--DEALNIFYVTDEMGNPADPKIIEAVRQKIGLS 394 (444)
Q Consensus 326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g--~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~ 394 (444)
+.+.+..+|+||.|++|++.|+++|++|......... ....-.|.+.+. ...+.+.+.|.+.
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~-------~~~~~~~~~L~~~ 65 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ-------EDRERAKEILKEA 65 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH-------HHHHHHHHHHHHc
Confidence 4578899999999999999999999999988776542 234445555411 2455666666554
No 102
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.78 E-value=0.0084 Score=48.18 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=47.5
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC-CeEE-EEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIA-SLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (444)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~-~~~~-dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL 188 (444)
..|.+...|+||.|++|+++|+.+|+||.+..+.... ..+. -++.+.- | ++..+++|.++|.+..
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~---~----d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI---Q----DDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC---C----CHHHHHHHHHHHhCCc
Confidence 3688999999999999999999999999998887543 3332 3333321 1 3456678888887644
No 103
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.71 E-value=0.01 Score=46.97 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=49.2
Q ss_pred eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC-CceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013389 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE-RDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVK 399 (444)
Q Consensus 326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~-g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~ 399 (444)
+.+.+...++||.|++|+.+|+.+|.||.+..+.-. .......-.+.. ++..+++|.++|.+ +..|.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~------~~~~i~ql~kQL~K-L~dV~ 71 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA------SERPIDLLSSQLNK-LVDVA 71 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC------CCchHHHHHHHHhc-CcCeE
Confidence 568999999999999999999999999999999643 222333322322 24567888888887 43443
No 104
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.71 E-value=0.012 Score=48.54 Aligned_cols=70 Identities=20% Similarity=0.251 Sum_probs=54.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccc
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE 400 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~ 400 (444)
...|.+...|+||+|++|+-.|+.+|.||.+..+.-.+......+.+.-. ++..++++.++|.+. ..|.+
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-----~~~~i~Qi~kQL~KL-idVik 77 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-----DDQRLEQMISQIEKL-EDVLK 77 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-----CchHHHHHHHHHhCC-cCEEE
Confidence 57899999999999999999999999999999997555554444444321 236889999999984 45544
No 105
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.0041 Score=60.04 Aligned_cols=38 Identities=11% Similarity=0.201 Sum_probs=35.4
Q ss_pred CeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec
Q 013389 246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA 283 (444)
Q Consensus 246 ~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~ 283 (444)
...++++.|+|+||+.+.|++.|+++|+||.++.-++.
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D 43 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDD 43 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccc
Confidence 56899999999999999999999999999999998863
No 106
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.62 E-value=0.015 Score=52.51 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=49.0
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC--CeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN--GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (444)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~--~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~ 189 (444)
..+.|...|+||.|++|+++|+++|+||.+..+..++ +...-+|.|.. ++...+.|.++|.+...
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKLVD 68 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcCcc
Confidence 4688999999999999999999999999998877654 34444444432 24567788888886443
No 107
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.61 E-value=0.016 Score=52.64 Aligned_cols=65 Identities=20% Similarity=0.274 Sum_probs=49.0
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC--CeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN--GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (444)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~--~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~ 189 (444)
..+.|...|+||.|++|+++|+.+|+||.+..+.... +...-++.|.. +++.+++|.++|.+...
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KLid 69 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKLID 69 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcccc
Confidence 4688999999999999999999999999998776543 34444444432 34567788888887543
No 108
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.60 E-value=0.016 Score=44.59 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=43.2
Q ss_pred EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
-|.+.+.|+||++++++.+|+++|+||......+. ++......+++... +.+.++.+-+.|.+
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~------~~~~l~~~i~~L~~ 65 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET------SEAALNAALAEIEA 65 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC------CHHHHHHHHHHHHc
Confidence 47888999999999999999999999998877554 32333343444321 34455555555553
No 109
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.56 E-value=0.0079 Score=46.40 Aligned_cols=63 Identities=22% Similarity=0.357 Sum_probs=44.9
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCc-eEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389 327 RLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERD-EALNIFYVTDEMGNPADPKIIEAVRQKIGL 393 (444)
Q Consensus 327 ~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~-~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~ 393 (444)
.+.+.+.|+||+|.+|+++|.+.|++|......+..+ ......++++ ..+...++++-+.|..
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~----~~~~~~l~~~i~~L~~ 65 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH----ETSEAALNAALAEIEA 65 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc----cCCHHHHHHHHHHHHc
Confidence 5788999999999999999999999999998765432 2223333332 2234566666666665
No 110
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.54 E-value=0.015 Score=43.69 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=43.4
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecC--CeEEEEEEEEeCCCCCCCchHHHHHHHH
Q 013389 38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDG--RFFMDVFHVTDLNGNKLTDESVISYIEQ 100 (444)
Q Consensus 38 V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~--g~~~dvF~V~d~~g~~~~~~~~~~~i~~ 100 (444)
+.+...|++|++++++++|+++|+||....+...+ |...-.|.+.+. ...++++.|++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~-----~~~~l~~~l~~ 61 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP-----VPEEVLEELKA 61 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC-----CCHHHHHHHHc
Confidence 56889999999999999999999999999987643 666656666331 13445555553
No 111
>PRK07431 aspartate kinase; Provisional
Probab=96.53 E-value=1.1 Score=48.92 Aligned_cols=209 Identities=14% Similarity=0.143 Sum_probs=122.6
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC-
Q 013389 33 PTATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG- 108 (444)
Q Consensus 33 ~~~t~V~v~~~---dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~- 108 (444)
.+..+|++.+. +.+|+++++.++|++.|.+|.... ++ +..+ .|.|...+. ++..+.|++.+......
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~-sS--e~~I-s~vv~~~d~-----~~av~~Lh~~f~~~~~~~ 416 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS-TS--EVKV-SCVIDAEDG-----DKALRAVCEAFELEDSQI 416 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE-cC--CCEE-EEEEcHHHH-----HHHHHHHHHHhccCCccc
Confidence 46788888886 789999999999999999996554 22 2222 344443222 34556677666433211
Q ss_pred --CC-------------CCCCCceEEEEE-EcCCcchHHHHHHHHHHCCCeEEEEEEEe-eC--CeEEEEEEEEcCCCCC
Q 013389 109 --RS-------------NSFNGLTALELT-GTDRVGLLSEVFAVLADLQCSVVEAKVWT-HN--GRIASLIYVKDCNSGS 169 (444)
Q Consensus 109 --~~-------------~~~~~~t~i~v~-~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~--~~~~dvf~V~d~~~g~ 169 (444)
.| ....+...|++. .++.||.++++...|+++|++|..-.... ++ +...-.|.+..
T Consensus 417 ~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~----- 491 (587)
T PRK07431 417 EINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK----- 491 (587)
T ss_pred ccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-----
Confidence 11 122333445544 46789999999999999999999653321 12 12222344332
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEE
Q 013389 170 PIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSV 249 (444)
Q Consensus 170 ~i~~~~r~~~i~~~L~~vL~~~~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tv 249 (444)
+.+....+.+.+ |..+.. .-.+.+ +++...
T Consensus 492 -----~~~~~~~~~l~~-l~~~~~----------------------------------------~~~i~~----~~~va~ 521 (587)
T PRK07431 492 -----EDREAAQKVLRE-LAKQLP----------------------------------------GAEVED----GPAIAK 521 (587)
T ss_pred -----HHHHHHHHHHHH-HHHhcC----------------------------------------CceEEE----eCCeEE
Confidence 111222222222 111000 011222 235678
Q ss_pred EEEEcc---CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Q 013389 250 VNVQCK---DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV 318 (444)
Q Consensus 250 v~V~~~---DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al 318 (444)
|.+.+. .+||++.++..+|.+.|++|.... | ....-.|.|.. +..++..+.|.+.+
T Consensus 522 VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--~--S~~~Is~vV~~---------~~~~~av~~Lh~~f 580 (587)
T PRK07431 522 VSIVGAGMPGTPGVAARMFRALADAGINIEMIA--T--SEIRTSCVVAE---------DDGVKALQAVHQAF 580 (587)
T ss_pred EEEECCCccCCcCHHHHHHHHHHHCCCcEEEee--c--cceEEEEEEeH---------HHHHHHHHHHHHHh
Confidence 888885 889999999999999999996544 2 22333355542 24556666666555
No 112
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.53 E-value=0.021 Score=43.08 Aligned_cols=62 Identities=18% Similarity=0.274 Sum_probs=43.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
.+.+.+.|+||++++|+.+|++++++|.+....+. ++......+..+.. + +.++.+.+.|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD------D-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC------H-HHHHHHHHHHhC
Confidence 46788999999999999999999999999988775 33333333333311 2 445556666553
No 113
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.51 E-value=0.017 Score=43.60 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=30.4
Q ss_pred EEEEecCCCchHHHHHHHHHHCCceEEEEEeec
Q 013389 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVST 360 (444)
Q Consensus 328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T 360 (444)
+.+.+.||||.|.+|++.|+++|++|.......
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 678899999999999999999999999998765
No 114
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=96.47 E-value=0.017 Score=45.31 Aligned_cols=63 Identities=22% Similarity=0.305 Sum_probs=45.4
Q ss_pred EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCc-eEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013389 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERD-EALNIFYVTDEMGNPADPKIIEAVRQKIGLS 394 (444)
Q Consensus 328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~-~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~ 394 (444)
+-+...|+||-|++|-..|+++|+|+++.+...... .-.=.||| |.+|. +..++++-++|...
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~~---~~~~~~~l~~L~~~ 66 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEVD---RGDLDQLISSLRRV 66 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEcC---hHHHHHHHHHHHHh
Confidence 445568999999999999999999999999976554 45667777 66672 33344444555443
No 115
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.47 E-value=0.026 Score=43.07 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=32.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee
Q 013389 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH 152 (444)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~ 152 (444)
+.+.+..+|+||.|++++..|+++|+||.+......
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 568889999999999999999999999998877664
No 116
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.46 E-value=0.012 Score=45.71 Aligned_cols=63 Identities=19% Similarity=0.183 Sum_probs=45.4
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC-ceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389 327 RLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER-DEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393 (444)
Q Consensus 327 ~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~ 393 (444)
.+.+.+.||||+|++|++.+++.|++|......+.. +.+.=.|-+.-. .. +..++.|-++|..
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~---~~-~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS---TM-NGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC---ch-HHHHHHHHHHHhc
Confidence 588999999999999999999999999999876543 445555555321 11 1256666666655
No 117
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.41 E-value=0.025 Score=44.16 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=46.1
Q ss_pred EEEecCCCchHHHHHHHHHHCCceEEEEEeecC-CceEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013389 329 ELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE-RDEALNIFYVTDEMGNPADPKIIEAVRQKIGLS 394 (444)
Q Consensus 329 ev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~-g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~ 394 (444)
-+...|+||-|++|...|+++|+||.+.+..-. +....=.||| +..|.+ ++...+.+-+.|.+.
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~i-d~~~~~-~~~~~~~~l~~l~~~ 67 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFV-DFEGHI-DDPDVKEALEELKRV 67 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE-EEECCC-CCHHHHHHHHHHHHh
Confidence 345689999999999999999999999977644 3467777888 455642 234455555555553
No 118
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.31 E-value=0.024 Score=44.89 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=45.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CC-eEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHH
Q 013389 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NG-RIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV 187 (444)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~-~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~v 187 (444)
+.+.+...|+||.|++++++|...|.||.+..+.-. ++ ...-++.|.+ . ..++.|.++|.+.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~---~------~~i~ql~kQL~KL 67 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS---E------RPIDLLSSQLNKL 67 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC---C------chHHHHHHHHhcC
Confidence 578999999999999999999999999999888753 33 3333444422 2 3356777777764
No 119
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.28 E-value=0.02 Score=42.79 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=30.8
Q ss_pred EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC
Q 013389 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER 362 (444)
Q Consensus 328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g 362 (444)
+.+..+||||-|++++.+|.++|+||.+.......
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 67788999999999999999999999988775544
No 120
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.28 E-value=0.019 Score=44.07 Aligned_cols=58 Identities=28% Similarity=0.476 Sum_probs=40.7
Q ss_pred EEEEecCCCchHHHHHHHHHHCCceEEEEEeec--CCceEEEEEEEEcCCCCCCChHHHHHHHH
Q 013389 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVST--ERDEALNIFYVTDEMGNPADPKIIEAVRQ 389 (444)
Q Consensus 328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T--~g~~a~d~FyV~d~~g~~v~~~~~~~lr~ 389 (444)
+-+...|+||.+++|++.|+++|+||....... .++.+.-+|.+. + +...+.++.|++
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~---~-~~~~~~~~~l~~ 61 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD---E-PVPDEVLEELRA 61 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC---C-CCCHHHHHHHHc
Confidence 346789999999999999999999999888755 345555555442 3 333344455544
No 121
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.25 E-value=0.015 Score=43.44 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=36.2
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEE
Q 013389 37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD--GRFFMDVFHVT 82 (444)
Q Consensus 37 ~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~--~g~~~dvF~V~ 82 (444)
++.+.-+|+||-|++++++|+++|.||...+.+.. .|...-.|.+.
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve 48 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTE 48 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeC
Confidence 36788999999999999999999999998887653 25554344443
No 122
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.15 E-value=0.038 Score=42.74 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=30.1
Q ss_pred EEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee
Q 013389 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH 152 (444)
Q Consensus 119 i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~ 152 (444)
+.+.-+|+||-|++++.+|+++|+||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 6788999999999999999999999998865543
No 123
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.10 E-value=0.037 Score=41.84 Aligned_cols=36 Identities=36% Similarity=0.518 Sum_probs=32.3
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC
Q 013389 327 RLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER 362 (444)
Q Consensus 327 ~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g 362 (444)
.+.+.+.|+||.|++|++.|.+++++|......+..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence 477889999999999999999999999988887653
No 124
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.98 E-value=0.0088 Score=45.50 Aligned_cols=44 Identities=11% Similarity=0.255 Sum_probs=35.1
Q ss_pred EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEE
Q 013389 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYV 371 (444)
Q Consensus 328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV 371 (444)
+-+.+.||||+|.+|+.+|.+.|+||......+.++.+.-.|-+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 45689999999999999999999999888776655555444444
No 125
>PRK08577 hypothetical protein; Provisional
Probab=95.97 E-value=0.067 Score=47.04 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=37.8
Q ss_pred CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC
Q 013389 111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN 153 (444)
Q Consensus 111 ~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~ 153 (444)
.+....+.|.|.+.|+||+|++|+.+|+++++||.+....+..
T Consensus 51 ~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 51 LPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred CCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 3455689999999999999999999999999999998877743
No 126
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.96 E-value=0.053 Score=40.78 Aligned_cols=57 Identities=26% Similarity=0.298 Sum_probs=40.7
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCchHHHHHHH
Q 013389 38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIE 99 (444)
Q Consensus 38 V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~d~~g~~~~~~~~~~~i~ 99 (444)
+.+...|+||.+++++++|+++|++|....... .++...-.+.+.+. ...++++.|+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~-----~~~~~i~~l~ 60 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP-----IDEEVIEEIK 60 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC-----CCHHHHHHHH
Confidence 577899999999999999999999999888765 24554434444332 2244555555
No 127
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.92 E-value=0.072 Score=38.94 Aligned_cols=45 Identities=20% Similarity=0.414 Sum_probs=35.2
Q ss_pred EEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC-CeEEEEEEEE
Q 013389 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVK 163 (444)
Q Consensus 119 i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~-~~~~dvf~V~ 163 (444)
|.+.+.|+||.+++++.+|++++++|.+..+...+ +.....|.+.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 46 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE 46 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence 46789999999999999999999999999887655 3333334443
No 128
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.87 E-value=0.043 Score=41.47 Aligned_cols=45 Identities=18% Similarity=0.368 Sum_probs=35.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC-CeEEEEEEE
Q 013389 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYV 162 (444)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~-~~~~dvf~V 162 (444)
++.+.++|+||.|++++..|+++++||.+....+.+ +...-.|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~ 47 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMEL 47 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEE
Confidence 578899999999999999999999999988876643 343333333
No 129
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.84 E-value=0.052 Score=44.39 Aligned_cols=51 Identities=25% Similarity=0.440 Sum_probs=41.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC-ceEEEEEEEEcCCCC
Q 013389 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER-DEALNIFYVTDEMGN 377 (444)
Q Consensus 326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~FyV~d~~g~ 377 (444)
+.|-+...|+||-|+++-..|+++|+|+.+.+..-.. ..-.=.||| |.+|.
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV-Dieg~ 66 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI-NLDKK 66 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcC
Confidence 5566777999999999999999999999999997654 345567777 56675
No 130
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.84 E-value=0.074 Score=38.88 Aligned_cols=61 Identities=25% Similarity=0.338 Sum_probs=43.8
Q ss_pred EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCce-EEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDE-ALNIFYVTDEMGNPADPKIIEAVRQKIGL 393 (444)
Q Consensus 328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~-a~d~FyV~d~~g~~v~~~~~~~lr~~l~~ 393 (444)
|.+.+.|+||++.+|+..|.+++++|....+...++. +.-.|.+.-. +...++.+.++|..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ 62 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-----DLEHLARIMRKLRQ 62 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence 4678999999999999999999999999999876633 3223333212 23456777777665
No 131
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=95.83 E-value=0.04 Score=42.18 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=37.6
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEe
Q 013389 38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTD 83 (444)
Q Consensus 38 V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~d 83 (444)
+.+..+|+||.+++++++|+++|+||...+.+. .++...-+|.+..
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 467899999999999999999999999888754 4566665666654
No 132
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.82 E-value=0.052 Score=41.95 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=42.6
Q ss_pred EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC-ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013389 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER-DEALNIFYVTDEMGNPADPKIIEAVRQKIGLS 394 (444)
Q Consensus 328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~ 394 (444)
+.+..+|+||-|++++..|+++|.||.+....... +.....-+|+- .+.. +..++.|.++|.+.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v-~~e~--~~~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRV-TPMD--RSKENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEE-EEec--chHHHHHHHHHhCc
Confidence 67889999999999999999999999988766441 22222233321 1112 12367777777654
No 133
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.80 E-value=0.024 Score=43.14 Aligned_cols=60 Identities=22% Similarity=0.432 Sum_probs=40.7
Q ss_pred CCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013389 334 DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKV 398 (444)
Q Consensus 334 DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~ 398 (444)
|+||.|.+|+.+|+..|+||.+..+....+...-.+.++ ..|. +..++.|.++|.+ +.+|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~-v~~~---~~~i~~l~~Ql~K-lidV 60 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIV-VSGD---DREIEQLVKQLEK-LIDV 60 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEE-EES----CCHHHHHHHHHHC-STTE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEE-EeeC---chhHHHHHHHHhc-cCCe
Confidence 789999999999999999999999987443333333332 1122 2467888888887 3344
No 134
>PRK08577 hypothetical protein; Provisional
Probab=95.75 E-value=0.15 Score=44.86 Aligned_cols=76 Identities=9% Similarity=0.116 Sum_probs=51.0
Q ss_pred EEEEEec--CCCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecC--CEEEEEEEEEeCCCCCCCCHHHHHHHH
Q 013389 236 VVTVQNW--ADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG--ERAYLEFYIRHIDGTPISSEPERQRVI 311 (444)
Q Consensus 236 ~V~v~~~--~~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g--~~a~d~F~V~~~~g~~l~~~~~~~~l~ 311 (444)
.+.+.+- ..+....+.|.+.|+||+|++++.+|+++++||.+....+.. +.+.-.|.+.-. +. +...+.+.
T Consensus 43 ~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~-~~----~~~l~~l~ 117 (136)
T PRK08577 43 EIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLS-KS----DIDLEELE 117 (136)
T ss_pred EEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeC-Cc----hhhHHHHH
Confidence 3444443 334578899999999999999999999999999988876643 444444444322 11 12455666
Q ss_pred HHHHH
Q 013389 312 QCLEA 316 (444)
Q Consensus 312 ~~L~~ 316 (444)
+.|.+
T Consensus 118 ~~L~~ 122 (136)
T PRK08577 118 EELKK 122 (136)
T ss_pred HHHHc
Confidence 66543
No 135
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.75 E-value=0.12 Score=40.89 Aligned_cols=48 Identities=17% Similarity=0.278 Sum_probs=39.0
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEc
Q 013389 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKD 164 (444)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d 164 (444)
+.+.+..+|+||.|+++..+|+++|+||.+...... ++...-.|+|.-
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~ 50 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF 50 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence 457778899999999999999999999998876654 334556788865
No 136
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.72 E-value=0.013 Score=44.59 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=37.1
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEe
Q 013389 38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTD 83 (444)
Q Consensus 38 V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d 83 (444)
+.+...|+||++++++.+|++.|.||...+..+.+|.+.-.|.+..
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~ 47 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDS 47 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCC
Confidence 5678999999999999999999999988776665576665555443
No 137
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.70 E-value=0.041 Score=41.87 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=39.3
Q ss_pred CCcchHHHHHHHHHHCCCeEEEEEEEee--CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389 125 DRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (444)
Q Consensus 125 DrpGLl~~i~~vL~~~~~~I~~A~i~T~--~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL 188 (444)
|+||.|.+|+++|...|+||.+..+... ++...-.+.+... +...+.|.++|.+..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~--------~~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD--------DREIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---------CCHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC--------chhHHHHHHHHhccC
Confidence 7899999999999999999999999873 3444444544431 234566777777643
No 138
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.70 E-value=0.065 Score=37.15 Aligned_cols=35 Identities=40% Similarity=0.539 Sum_probs=31.6
Q ss_pred EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC
Q 013389 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER 362 (444)
Q Consensus 328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g 362 (444)
+.+.+.|++|++++|+.+|.+.|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46789999999999999999999999999987654
No 139
>PRK07334 threonine dehydratase; Provisional
Probab=95.60 E-value=0.19 Score=52.34 Aligned_cols=64 Identities=20% Similarity=0.302 Sum_probs=48.8
Q ss_pred ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-----CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-----NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-----~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
.+.|.|.+.||||+|++|+.+|++.++||.+....+. ++.+.-.|.+.- .+.+.++.|.+.|++
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999988764 344333333332 145677777777775
No 140
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.58 E-value=0.09 Score=40.22 Aligned_cols=35 Identities=31% Similarity=0.595 Sum_probs=31.3
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEee
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVS 359 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~ 359 (444)
+..+.+..+|+||.|.+++++|.++|+||......
T Consensus 1 g~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~ 35 (72)
T cd04883 1 SSQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY 35 (72)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe
Confidence 35788999999999999999999999999988654
No 141
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.45 E-value=0.13 Score=39.38 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=38.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEE
Q 013389 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVT 82 (444)
Q Consensus 36 t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~ 82 (444)
+.+.+..+|+||.|.+++++|+++|+||.+.+..- .++...-+|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 46889999999999999999999999999887643 345555556654
No 142
>PRK04435 hypothetical protein; Provisional
Probab=95.36 E-value=0.15 Score=45.60 Aligned_cols=68 Identities=26% Similarity=0.344 Sum_probs=48.6
Q ss_pred CCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 113 ~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
......|.+...|+||+|++|+.+|+++|+||......+. +|.+.-.|-+... + ....++.|-+.|++
T Consensus 66 ~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs--~----~~~~L~~Li~~L~~ 134 (147)
T PRK04435 66 KGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS--S----MEGDIDELLEKLRN 134 (147)
T ss_pred CCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC--C----hHHHHHHHHHHHHc
Confidence 4567899999999999999999999999999998876554 4544445555442 1 11245666666654
No 143
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.14 E-value=0.17 Score=34.93 Aligned_cols=35 Identities=34% Similarity=0.556 Sum_probs=31.2
Q ss_pred EEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC
Q 013389 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN 153 (444)
Q Consensus 119 i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~ 153 (444)
|.+.++|+||++++++.+|++++++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46789999999999999999999999999886643
No 144
>PRK06635 aspartate kinase; Reviewed
Probab=94.97 E-value=0.42 Score=49.67 Aligned_cols=105 Identities=15% Similarity=0.167 Sum_probs=66.6
Q ss_pred EEEEE-eCCCccHHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCC-CCC
Q 013389 37 LVKVD-SARRHGILLEAVQVLTDLNLLIKKAYISSDG-RFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS-NSF 113 (444)
Q Consensus 37 ~V~v~-~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~-g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~-~~~ 113 (444)
.|++. -.+++|.++++.++|++.|+||.-...+... |..--.|.|.+.+. +...+.|++ +........ ...
T Consensus 264 ~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~-----~~a~~~L~~-~~~~~~~~~i~~~ 337 (404)
T PRK06635 264 KVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDL-----EKALELLEE-VKDEIGAESVTYD 337 (404)
T ss_pred EEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHH-----HHHHHHHHH-HHHHcCcceEEEc
Confidence 34433 4578999999999999999999976554323 23333455543211 223333443 111100000 123
Q ss_pred CCceEEEEEE---cCCcchHHHHHHHHHHCCCeEEEE
Q 013389 114 NGLTALELTG---TDRVGLLSEVFAVLADLQCSVVEA 147 (444)
Q Consensus 114 ~~~t~i~v~~---~DrpGLl~~i~~vL~~~~~~I~~A 147 (444)
.+...+.|.| ++.||.++++..+|++.|+||...
T Consensus 338 ~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 338 DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred CCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 4566788877 689999999999999999999864
No 145
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.94 E-value=0.057 Score=42.19 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=49.2
Q ss_pred EEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee--CCeEEEEE-EEEcCCCCCCCCChHHHHHHHHHHHHHhcC
Q 013389 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLI-YVKDCNSGSPIEDSQQIDRIEARLRNVLKG 190 (444)
Q Consensus 119 i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~--~~~~~dvf-~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~ 190 (444)
|+++|+-||-.|+++|-+|..+++-|.+|+|--+ +++---++ +..++ .++.+..+.....|...+.+.|-|
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e-~~~~~~~~~~r~~i~drv~~~lmg 76 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLE-HDRLKLGGRQRSKVVDRVTKTLMG 76 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecC-CCccccchHHHHHHHHHHHHHHhc
Confidence 7889999999999999999999999999999764 34443443 23332 233343344456677666666543
No 146
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.92 E-value=0.095 Score=41.20 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=40.1
Q ss_pred EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC-ceEEEEEEEEcCCCCC
Q 013389 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER-DEALNIFYVTDEMGNP 378 (444)
Q Consensus 328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~FyV~d~~g~~ 378 (444)
+-+...|+||-|+++-..|.++|+|+.+.+..... ....=.||| |.+|..
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e~~~ 53 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCECDQ 53 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcCH
Confidence 44556899999999999999999999999997654 446677887 566654
No 147
>PRK04435 hypothetical protein; Provisional
Probab=94.90 E-value=0.28 Score=43.80 Aligned_cols=54 Identities=13% Similarity=-0.021 Sum_probs=43.9
Q ss_pred cCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEe
Q 013389 30 AVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTD 83 (444)
Q Consensus 30 ~~~~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d 83 (444)
...+..+.+.+...|+||+|+++.++|+++|+||....... .+|.+--.|.+..
T Consensus 64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev 118 (147)
T PRK04435 64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT 118 (147)
T ss_pred cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe
Confidence 34567789999999999999999999999999999988765 4566555566654
No 148
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=94.83 E-value=0.68 Score=48.06 Aligned_cols=101 Identities=10% Similarity=0.195 Sum_probs=66.7
Q ss_pred CCeEEEEEE---ccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc-
Q 013389 245 RSYSVVNVQ---CKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR- 320 (444)
Q Consensus 245 ~~~tvv~V~---~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r- 320 (444)
.+...|+|. ..++||+++++..+|.+.+++|..-... .....-.|.|... ..+++.+.|.+.+..
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~--~s~~~Is~~V~~~---------d~~~a~~~L~~~~~~~ 326 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT--PSETSISLTVDET---------DADEAVRALKDQSGAA 326 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC--CCCceEEEEEeHH---------HHHHHHHHHHHHHHhc
Confidence 456778888 5788999999999999999999754221 1112233556321 233444444443211
Q ss_pred C------CCCceEEEEEec---CCCchHHHHHHHHHHCCceEEEE
Q 013389 321 R------ASEGVRLELCME---DRQGLLADVTRTFRENGLNVTRA 356 (444)
Q Consensus 321 r------~~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A 356 (444)
. ...-..|.|.+. ++||+++++.++|.+.|+||...
T Consensus 327 ~~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i 371 (401)
T TIGR00656 327 GLDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMI 371 (401)
T ss_pred CCceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence 0 122345667764 78999999999999999999853
No 149
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.54 E-value=0.16 Score=43.49 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=42.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCce-EEEEEEEEcCCCCC
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDE-ALNIFYVTDEMGNP 378 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~-a~d~FyV~d~~g~~ 378 (444)
.+.+-+...|+||-|++|-..|+++|||+++.+....... -.=.||| |..|..
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~~ 94 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVHR 94 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeCH
Confidence 3567777799999999999999999999999999876554 4456666 666654
No 150
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=94.52 E-value=0.62 Score=48.34 Aligned_cols=106 Identities=15% Similarity=0.235 Sum_probs=68.2
Q ss_pred CCeEEEEEE---eCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCC
Q 013389 33 PTATLVKVD---SARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGR 109 (444)
Q Consensus 33 ~~~t~V~v~---~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~ 109 (444)
.+...|+|. -.+++|+++++..+|.+.+++|.-......... ..|.|...+. ++..+.|++.+.... ..
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~--Is~~V~~~d~-----~~a~~~L~~~~~~~~-~~ 329 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETS--ISLTVDETDA-----DEAVRALKDQSGAAG-LD 329 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCce--EEEEEeHHHH-----HHHHHHHHHHHHhcC-Cc
Confidence 345667777 467899999999999999999975443211111 1355532111 233444444331110 00
Q ss_pred C-CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEE
Q 013389 110 S-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVE 146 (444)
Q Consensus 110 ~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~ 146 (444)
+ ....+...|.|.|. ++||+++++..+|++.|+||..
T Consensus 330 ~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 330 RVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred eEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 1 12345677888885 7899999999999999999984
No 151
>PRK11899 prephenate dehydratase; Provisional
Probab=94.41 E-value=0.16 Score=50.25 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=51.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC-CceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE-RDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVK 399 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~-g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~ 399 (444)
.+.+-+...|+||.|+++-..|+++|||+++.+..-. +..-.=+||| |..|..-++. ++..-++|......+|
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~~d~~-v~~aL~~l~~~~~~~k 267 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHPEDRN-VALALEELRFFSEEVR 267 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCCCCHH-HHHHHHHHHHhcCcEE
Confidence 4556666789999999999999999999999999755 4556778888 6778654433 3333333333333444
No 152
>PRK07334 threonine dehydratase; Provisional
Probab=94.38 E-value=0.24 Score=51.53 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=49.1
Q ss_pred eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec-----CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA-----GERAYLEFYIRHIDGTPISSEPERQRVIQCLEA 316 (444)
Q Consensus 247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~-----g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~ 316 (444)
.+.|.|.+.||||+|.+|+.+|++.++||.+....+. ++.+.-.|.|.-. +.+++++|.+.|++
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~------d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR------DAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC------CHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999988764 3455444544322 23477788777765
No 153
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.38 E-value=0.055 Score=42.25 Aligned_cols=44 Identities=23% Similarity=0.421 Sum_probs=37.3
Q ss_pred EEEEecCCCchHHHHHHHHHHCCceEEEEEeec--CCceEEEEEEE
Q 013389 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVST--ERDEALNIFYV 371 (444)
Q Consensus 328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T--~g~~a~d~FyV 371 (444)
||+++.-||-.+||+|-+|..+|+.|.+|+|.- .+++..-+|.+
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~ 48 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRV 48 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEE
Confidence 899999999999999999999999999999963 35565555444
No 154
>PRK09181 aspartate kinase; Validated
Probab=94.23 E-value=3.1 Score=44.38 Aligned_cols=104 Identities=17% Similarity=0.157 Sum_probs=71.2
Q ss_pred CCeEEEEEEcc---CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc-
Q 013389 245 RSYSVVNVQCK---DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR- 320 (444)
Q Consensus 245 ~~~tvv~V~~~---DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r- 320 (444)
.+.+.|+|.+. +.||+++++..+|.+++++|. .+.+.. ..-.|.|... ....+++.+.|.+.+..
T Consensus 327 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~-------~~~~~~~~~~L~~~~~~~ 395 (475)
T PRK09181 327 DKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS-------LKTLKRVIAELEKRYPNA 395 (475)
T ss_pred CCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC-------hHHHHHHHHHHHHhcCCc
Confidence 36778888654 789999999999999999998 344432 2334666432 11345555566554421
Q ss_pred --CCCCceEEEEEecC--CCchHHHHHHHHHHCCceEEEEEee
Q 013389 321 --RASEGVRLELCMED--RQGLLADVTRTFRENGLNVTRAEVS 359 (444)
Q Consensus 321 --r~~~~~~lev~~~D--RpGLL~~Itr~l~e~gl~I~~A~i~ 359 (444)
....-..|.|.+.. +||+.+++..+|.+.|+||....-+
T Consensus 396 ~i~~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg 438 (475)
T PRK09181 396 EVTVRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQS 438 (475)
T ss_pred eEEECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEec
Confidence 12334567777654 8999999999999999999776544
No 155
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.90 E-value=0.28 Score=54.74 Aligned_cols=65 Identities=18% Similarity=0.254 Sum_probs=49.9
Q ss_pred CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee--CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~--~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
-...|.|.+.||+|||++|+.+++..++||.+..+.+. ++.+...|.|.- .+.+.+..|-+.|++
T Consensus 665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~l~~~L~~ 731 (743)
T PRK10872 665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGRVLGKLNQ 731 (743)
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHHHHHHHhc
Confidence 34688999999999999999999999999999998775 355544454432 134677777777764
No 156
>PRK06291 aspartate kinase; Provisional
Probab=93.73 E-value=1.3 Score=47.04 Aligned_cols=107 Identities=11% Similarity=0.155 Sum_probs=71.6
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCC
Q 013389 33 PTATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGR 109 (444)
Q Consensus 33 ~~~t~V~v~~~---dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~ 109 (444)
.+...|++.+. +.+|+++++.++|+++|++|.-....+..-.+ .|.|...+- +...+.|++.+..... .
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sI--sf~V~~~d~-----~~av~~L~~~~~~~~~-~ 390 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNI--SLVVDEADL-----EKALKALRREFGEGLV-R 390 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceE--EEEEeHHHH-----HHHHHHHHHHHHHhcC-c
Confidence 34567788764 68999999999999999999876554433222 355544211 2344455555543110 0
Q ss_pred C-CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEE
Q 013389 110 S-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEA 147 (444)
Q Consensus 110 ~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A 147 (444)
. ....+...|.|.|. ++||+++++..+|+..|+||..-
T Consensus 391 ~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~i 432 (465)
T PRK06291 391 DVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMI 432 (465)
T ss_pred ceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEE
Confidence 1 12345677888886 69999999999999999999843
No 157
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.60 E-value=0.07 Score=42.95 Aligned_cols=60 Identities=35% Similarity=0.432 Sum_probs=42.2
Q ss_pred EEEEecC-CCchHHHHHHHHHHCCceEEEEEeec-----CC----ceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389 328 LELCMED-RQGLLADVTRTFRENGLNVTRAEVST-----ER----DEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393 (444)
Q Consensus 328 lev~~~D-RpGLL~~Itr~l~e~gl~I~~A~i~T-----~g----~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~ 393 (444)
+.|.+.| ++|+++.||++|+++|+||.+.+--+ .+ .+..-.|.|+ |.+.+ .+.||++|.+
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~---~~~~~---~~~lr~~L~~ 71 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVR---GQPAD---LEALRAALLE 71 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEe---CCCCC---HHHHHHHHHH
Confidence 6788999 99999999999999999997654431 11 2455567675 44433 5566666554
No 158
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.57 E-value=0.41 Score=53.49 Aligned_cols=64 Identities=23% Similarity=0.244 Sum_probs=49.8
Q ss_pred eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec--CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLEFYIRHIDGTPISSEPERQRVIQCLEA 316 (444)
Q Consensus 247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~ 316 (444)
...|.|.+.||+|||++|+.+++++++||....+.+. ++.+.-.|.|.=. +-..+.+|...|..
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~------~~~~L~~l~~~L~~ 731 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY------NLQVLGRVLGKLNQ 731 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC------CHHHHHHHHHHHhc
Confidence 3588899999999999999999999999999999775 4666666665422 23467777777654
No 159
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=93.56 E-value=0.28 Score=50.84 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=52.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEee-cCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccc
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVS-TERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE 400 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~-T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~ 400 (444)
.+.+-+...|+||.|+++-..|+.+|||+++.+.. +.+..-.=.||| |..|..-++ .++..-++|......+|-
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~eg~~~d~-~~~~aL~~l~~~~~~~kv 371 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQANLRSA-EMQKALKELGEITRSLKV 371 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEeCCCCCH-HHHHHHHHHHHhcCcEEE
Confidence 45566777899999999999999999999999997 556667888888 677865443 333333444443334443
No 160
>PRK08210 aspartate kinase I; Reviewed
Probab=93.56 E-value=1 Score=46.90 Aligned_cols=100 Identities=15% Similarity=0.268 Sum_probs=66.9
Q ss_pred CCeEEEEEEeCCC-ccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCCC
Q 013389 33 PTATLVKVDSARR-HGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSN 111 (444)
Q Consensus 33 ~~~t~V~v~~~dr-~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~~ 111 (444)
.+...|+|.+.+. +|.++++.+.|++.|+||.-...+... -.|.+.+.+ .+...+.|..... ...
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~~----is~~v~~~~---------~~~a~~~l~~~~~-~v~ 334 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPTE----VVFTVSDED---------SEKAKEILENLGL-KPS 334 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCce----EEEEEcHHH---------HHHHHHHHHHhCC-cEE
Confidence 3456777777665 999999999999999999887554332 235554311 1222333332210 001
Q ss_pred CCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEE
Q 013389 112 SFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVE 146 (444)
Q Consensus 112 ~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~ 146 (444)
...+...|.|.|. ++||+++++..+|++.|+||..
T Consensus 335 ~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 335 VRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred EeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 2345677778875 7899999999999999999974
No 161
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=93.46 E-value=0.64 Score=36.03 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=42.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCC-eEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG-RIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 119 i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~-~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
+.+..+|+||-|+++..+|+.+|+||..-+..-..+ ...-.|||.-. |.. ++...+.+-+.|.+
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~--~~~--~~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE--GHI--DDPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE--CCC--CCHHHHHHHHHHHH
Confidence 345568999999999999999999999886654333 34446666652 321 23444555555554
No 162
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.32 E-value=0.06 Score=43.36 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=43.2
Q ss_pred EEEEEcC-CcchHHHHHHHHHHCCCeEEEEEEEeeC---------CeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHH
Q 013389 119 LELTGTD-RVGLLSEVFAVLADLQCSVVEAKVWTHN---------GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV 187 (444)
Q Consensus 119 i~v~~~D-rpGLl~~i~~vL~~~~~~I~~A~i~T~~---------~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~v 187 (444)
|+|.|+| .+|++++++++|+++|+||...+-.+.. .+....|.|..+ +. +. +.++++|.+.
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~----~~-~~---~~lr~~L~~l 72 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ----PA-DL---EALRAALLEL 72 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC----CC-CH---HHHHHHHHHH
Confidence 7899999 9999999999999999999875554211 244445666643 22 33 5677777753
No 163
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.30 E-value=0.91 Score=37.09 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=48.1
Q ss_pred EecCCCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Q 013389 240 QNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV 318 (444)
Q Consensus 240 ~~~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al 318 (444)
+++...+.+.|.+..+|+||-|+++...|+++|+|+.+-.-.... ..-.-.|||. .+|. .++ ..+.+.+.|.+.|
T Consensus 7 ~~~~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVD-ieg~--~~~-~~~~~l~~L~~~~ 82 (90)
T cd04931 7 ENSNKNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFIN-LDKK--SAP-ALDPIIKSLRNDI 82 (90)
T ss_pred cccCCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE-EEcC--CCH-HHHHHHHHHHHHh
Confidence 334444556777777999999999999999999999865443332 2222346664 4454 233 4555556665544
No 164
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=93.21 E-value=0.4 Score=45.38 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=45.9
Q ss_pred CCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC--CceEEEEEEEEcCCCCCCChHHHHH
Q 013389 323 SEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE--RDEALNIFYVTDEMGNPADPKIIEA 386 (444)
Q Consensus 323 ~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~FyV~d~~g~~v~~~~~~~ 386 (444)
+++..|-+.-.||||.+..|+.+|.++|+||....+... |+.|.-+.-+ ..+++++.+++
T Consensus 146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v----D~~v~~~vl~~ 207 (208)
T TIGR00719 146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI----DKNIDDHIKDA 207 (208)
T ss_pred CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe----CCCCCHHHHhh
Confidence 457778888999999999999999999999999999864 4455444433 34666566554
No 165
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.20 E-value=0.51 Score=36.06 Aligned_cols=60 Identities=18% Similarity=0.297 Sum_probs=39.0
Q ss_pred EEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 120 ELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 120 ~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
.|.-+||||-|.+++.+++. |.||...+=.-.+.....++....- .+++..+.+.+.|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV------PDREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 57789999999999999999 9999976543322222233332221 134555667666664
No 166
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=93.17 E-value=0.35 Score=47.71 Aligned_cols=73 Identities=19% Similarity=0.320 Sum_probs=53.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC-ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER-DEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVK 399 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~ 399 (444)
.+.|-+...|+||-|+++-..|+.+|||+++.+..-.+ ....=.||| |..|..-+ ..++..-++|......+|
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~~-~~v~~AL~el~~~t~~~k 267 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHIDD-PLVKEALEELKEITEFVK 267 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcCc-HhHHHHHHHHHhheeEEE
Confidence 56777888899999999999999999999999997544 556667777 77787754 333333344444343444
No 167
>PRK06635 aspartate kinase; Reviewed
Probab=93.13 E-value=1.8 Score=44.94 Aligned_cols=104 Identities=14% Similarity=0.264 Sum_probs=68.2
Q ss_pred CCeEEEEEE-ccCCccHHHHHHHHHHhCCeeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH---hc
Q 013389 245 RSYSVVNVQ-CKDRTKLLFDVVCTLTDMEYVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA---VG 319 (444)
Q Consensus 245 ~~~tvv~V~-~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a---l~ 319 (444)
++...|++. -.++||+++++..+|.+.|+||..-...... +...-.|.|... ..++..+.|.+. +.
T Consensus 260 ~~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~---------~~~~a~~~L~~~~~~~~ 330 (404)
T PRK06635 260 KDEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRD---------DLEKALELLEEVKDEIG 330 (404)
T ss_pred CCeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHH---------HHHHHHHHHHHHHHHcC
Confidence 345555555 4678999999999999999999964333222 234445656421 233344444442 11
Q ss_pred cC----CCCceEEEEEe---cCCCchHHHHHHHHHHCCceEEEEE
Q 013389 320 RR----ASEGVRLELCM---EDRQGLLADVTRTFRENGLNVTRAE 357 (444)
Q Consensus 320 rr----~~~~~~lev~~---~DRpGLL~~Itr~l~e~gl~I~~A~ 357 (444)
-+ ......+.|.+ .|+||++++|.++|.++|++|....
T Consensus 331 ~~~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 331 AESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred cceEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 01 11245677765 5899999999999999999998753
No 168
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=92.76 E-value=4.3 Score=42.97 Aligned_cols=107 Identities=11% Similarity=0.121 Sum_probs=66.0
Q ss_pred CCCeEEEEEEcc---CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc
Q 013389 244 DRSYSVVNVQCK---DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR 320 (444)
Q Consensus 244 ~~~~tvv~V~~~---DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r 320 (444)
.++.+.|+|.+. .++|.+++|...|.++|+||..-........ -.|.+...+. +...+.+.+.....+..
T Consensus 304 ~~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~~ 376 (447)
T COG0527 304 DDNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLAE 376 (447)
T ss_pred CCCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcce
Confidence 356778888754 3569999999999999999976422221222 4466643211 11223333332222210
Q ss_pred -CCC-CceEEEEEec---CCCchHHHHHHHHHHCCceEEEEE
Q 013389 321 -RAS-EGVRLELCME---DRQGLLADVTRTFRENGLNVTRAE 357 (444)
Q Consensus 321 -r~~-~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A~ 357 (444)
... .-..+.+.+. ..||+.+.+.++|++.++||....
T Consensus 377 v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is 418 (447)
T COG0527 377 VEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS 418 (447)
T ss_pred EEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence 011 1234555544 679999999999999999999887
No 169
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=92.69 E-value=0.56 Score=52.32 Aligned_cols=65 Identities=12% Similarity=0.221 Sum_probs=48.9
Q ss_pred CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCC-eEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG-RIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~-~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
-.+.|.|.+.||+|+|++|+.+++..++||.++.+.+.++ .+...|.+.- .+.+.+..|-+.|+.
T Consensus 625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~Lr~ 690 (702)
T PRK11092 625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKIRV 690 (702)
T ss_pred eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence 3568899999999999999999999999999999877653 4333443332 134667777777764
No 170
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=92.49 E-value=0.7 Score=51.56 Aligned_cols=64 Identities=3% Similarity=0.006 Sum_probs=49.1
Q ss_pred eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVIQCLEA 316 (444)
Q Consensus 247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~ 316 (444)
...|.|.+.||+|+|.+|+.+++.+++||.+....+.. +.+.-.|.|.=. +-..+++|...|..
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~------~~~~L~~i~~~Lr~ 690 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR------DRVHLANIMRKIRV 690 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC------CHHHHHHHHHHHhC
Confidence 45788999999999999999999999999999987764 455555555422 23467777777654
No 171
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.11 E-value=0.91 Score=34.63 Aligned_cols=63 Identities=10% Similarity=0.172 Sum_probs=45.5
Q ss_pred EEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccc
Q 013389 329 ELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNL 396 (444)
Q Consensus 329 ev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~ 396 (444)
.|.-+||||=|.++++++.+ |.||....=.-.+.....++..-... +++.++.+.++|.+.-.
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~----~~~~~~~i~~~L~~~G~ 64 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVP----DREDLAELKERLEALGY 64 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeC----CHHHHHHHHHHHHHcCC
Confidence 46779999999999999999 99999887765554445555444332 23677788888776543
No 172
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=92.03 E-value=0.43 Score=43.17 Aligned_cols=47 Identities=17% Similarity=0.354 Sum_probs=38.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEc
Q 013389 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164 (444)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d 164 (444)
-+.+.+.++||.|.+++++++++|.||..|+.+..++.-...+|..-
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi 50 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI 50 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence 47788999999999999999999999999999986543334455554
No 173
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=91.99 E-value=0.91 Score=50.58 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=49.0
Q ss_pred CeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389 246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVIQCLEA 316 (444)
Q Consensus 246 ~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~ 316 (444)
-.+.|.|.+.||+|+|++|+.+++.++.||.+..+.+.. +.+.-.|.|.-. +-..+.+|...|..
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~------~~~~L~~ii~~L~~ 674 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK------NYKHLLKIMLKIKT 674 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC------CHHHHHHHHHHHhC
Confidence 345888999999999999999999999999999998764 555544555322 23467777776643
No 174
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.96 E-value=0.45 Score=36.20 Aligned_cols=46 Identities=9% Similarity=0.264 Sum_probs=35.6
Q ss_pred CCCeEEEEEEcc----CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEE
Q 013389 244 DRSYSVVNVQCK----DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIR 294 (444)
Q Consensus 244 ~~~~tvv~V~~~----DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~ 294 (444)
+.++..|+|.++ |.||++++++..|++.|++|+... | +..+.+.|.
T Consensus 3 ~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~ 52 (65)
T PF13840_consen 3 EEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVK 52 (65)
T ss_dssp ESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEE
T ss_pred cCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEe
Confidence 356788999988 899999999999999999998765 3 234446665
No 175
>PRK06291 aspartate kinase; Provisional
Probab=91.89 E-value=3.8 Score=43.57 Aligned_cols=104 Identities=9% Similarity=0.204 Sum_probs=69.8
Q ss_pred CCeEEEEEEcc---CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc-
Q 013389 245 RSYSVVNVQCK---DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR- 320 (444)
Q Consensus 245 ~~~tvv~V~~~---DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r- 320 (444)
++...|+|.+. +.||+++++..+|.++|++|..-...+.. ..-.|.|... ..++..+.|.+.+..
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~~---------d~~~av~~L~~~~~~~ 387 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDEA---------DLEKALKALRREFGEG 387 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeHH---------HHHHHHHHHHHHHHHh
Confidence 45678888865 78999999999999999999875333322 2223555432 223333444443321
Q ss_pred C------CCCceEEEEEec---CCCchHHHHHHHHHHCCceEEEEEee
Q 013389 321 R------ASEGVRLELCME---DRQGLLADVTRTFRENGLNVTRAEVS 359 (444)
Q Consensus 321 r------~~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A~i~ 359 (444)
. ..+-..|.|.+. +++|++.++..+|.+.|++|....-.
T Consensus 388 ~~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqg 435 (465)
T PRK06291 388 LVRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQG 435 (465)
T ss_pred cCcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEec
Confidence 1 122356777775 79999999999999999999855433
No 176
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.86 E-value=0.35 Score=50.51 Aligned_cols=61 Identities=25% Similarity=0.412 Sum_probs=49.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHH
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQ 389 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~ 389 (444)
...|-+.-.|+||.++.|+.+|.++|+||...++...|+.|.-+|-+ ++ ++.++.+++|++
T Consensus 338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~---D~-~~~~~~~~~i~~ 398 (409)
T PRK11790 338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV---DA-DYAEEALDALKA 398 (409)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe---CC-CCcHHHHHHHHc
Confidence 47888899999999999999999999999999999999777666644 34 445556666663
No 177
>PRK08210 aspartate kinase I; Reviewed
Probab=91.79 E-value=3.8 Score=42.64 Aligned_cols=97 Identities=15% Similarity=0.287 Sum_probs=65.4
Q ss_pred CCeEEEEEEccCC-ccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc--C
Q 013389 245 RSYSVVNVQCKDR-TKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR--R 321 (444)
Q Consensus 245 ~~~tvv~V~~~DR-pGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r--r 321 (444)
++...|+|.+.+. ||.+++|..+|.+.|+||..-..+. .. -.|.+.. +..+++.+.|.+. .. .
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~~--is~~v~~---------~~~~~a~~~l~~~-~~~v~ 334 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--TE--VVFTVSD---------EDSEKAKEILENL-GLKPS 334 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--ce--EEEEEcH---------HHHHHHHHHHHHh-CCcEE
Confidence 4566777776665 9999999999999999998764332 21 2355532 1234444444431 11 0
Q ss_pred -CCCceEEEEEec---CCCchHHHHHHHHHHCCceEEE
Q 013389 322 -ASEGVRLELCME---DRQGLLADVTRTFRENGLNVTR 355 (444)
Q Consensus 322 -~~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~ 355 (444)
...-..|.|.+. ++||+++++.++|.+.|++|..
T Consensus 335 ~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 335 VRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred EeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 122355667665 7999999999999999999974
No 178
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=91.78 E-value=0.82 Score=50.93 Aligned_cols=65 Identities=15% Similarity=0.253 Sum_probs=48.7
Q ss_pred CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC-CeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~-~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
-.+.|.|.+.||+|+|++|+.+++..++||.+..+.+.. +.+...|.|.- .+.+.+..|-..|+.
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L~~ 674 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKIKT 674 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence 356899999999999999999999999999999987763 44433333332 134667777777764
No 179
>PRK09034 aspartate kinase; Reviewed
Probab=91.77 E-value=5.7 Score=42.11 Aligned_cols=108 Identities=14% Similarity=0.109 Sum_probs=66.8
Q ss_pred CeEEEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCC
Q 013389 34 TATLVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS 110 (444)
Q Consensus 34 ~~t~V~v~~---~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~ 110 (444)
+.+.|++.+ .+++|+++++.++|+++|++|.-. ++ +... -.|.|.+.+- +...+..+.+.|........
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~s-s~~s-is~~v~~~~~----~~a~~~~l~~el~~~~~~~~ 378 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--PS-GIDD-LSIIIRERQL----TPKKEDEILAEIKQELNPDE 378 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--cC-CCcE-EEEEEeHHHh----hHHHHHHHHHHHHHhhCCce
Confidence 345667765 567999999999999999998875 22 2211 2355654321 01011222222322110001
Q ss_pred -CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEEEE
Q 013389 111 -NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKV 149 (444)
Q Consensus 111 -~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~i 149 (444)
....+...|.+.|. +.||+++++..+|+.+|+||.....
T Consensus 379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq 421 (454)
T PRK09034 379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQ 421 (454)
T ss_pred EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 12345677888764 7899999999999999999986543
No 180
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=91.34 E-value=0.73 Score=41.70 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=37.4
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEE
Q 013389 37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVT 82 (444)
Q Consensus 37 ~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~ 82 (444)
-+.+...|+||.|.++++++++.|.||.-++.+. +|..+..-|.+-
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE 51 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE 51 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee
Confidence 3678899999999999999999999999999975 443665445443
No 181
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=91.09 E-value=0.86 Score=50.41 Aligned_cols=67 Identities=24% Similarity=0.416 Sum_probs=49.6
Q ss_pred CCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 114 ~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
.-.+.|.|.+.||+|||++|+.+|+..++||.+....+.+++.+.+..... +.+...+..|-.+|.+
T Consensus 625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~------v~n~~~L~~i~~~l~~ 691 (701)
T COG0317 625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE------VKNLNHLGRVLARLKQ 691 (701)
T ss_pred ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE------ECcHHHHHHHHHHHhc
Confidence 456889999999999999999999999999999888886555555432222 1234566666666653
No 182
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=90.81 E-value=1.1 Score=42.50 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=43.3
Q ss_pred CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee--CCeEEEEEEEEc
Q 013389 111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKD 164 (444)
Q Consensus 111 ~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~--~~~~~dvf~V~d 164 (444)
+...+...+.+.-.|+||.+..|+.+|.++++||...++... ++.+..++.|..
T Consensus 143 d~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~ 198 (208)
T TIGR00719 143 EFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK 198 (208)
T ss_pred EecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence 334456778888899999999999999999999999999874 466666665543
No 183
>PRK09034 aspartate kinase; Reviewed
Probab=90.78 E-value=5.7 Score=42.11 Aligned_cols=108 Identities=12% Similarity=0.194 Sum_probs=71.2
Q ss_pred CCeEEEEEEc---cCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC
Q 013389 245 RSYSVVNVQC---KDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR 321 (444)
Q Consensus 245 ~~~tvv~V~~---~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr 321 (444)
++.+.|++.+ .++||+++++..+|.++|++|..- . .+...-.|.|...+ +. ......+.+.|...+...
T Consensus 306 ~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~--ss~~sis~~v~~~~---~~-~a~~~~l~~el~~~~~~~ 377 (454)
T PRK09034 306 KGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--P--SGIDDLSIIIRERQ---LT-PKKEDEILAEIKQELNPD 377 (454)
T ss_pred CCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--c--CCCcEEEEEEeHHH---hh-HHHHHHHHHHHHHhhCCc
Confidence 4567788875 678999999999999999999874 2 22233457776432 11 101134444444333110
Q ss_pred ----CCCceEEEEEec---CCCchHHHHHHHHHHCCceEEEEEeec
Q 013389 322 ----ASEGVRLELCME---DRQGLLADVTRTFRENGLNVTRAEVST 360 (444)
Q Consensus 322 ----~~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A~i~T 360 (444)
...-..|.+.+. ++||+++++..+|.++|++|....-.+
T Consensus 378 ~I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 378 ELEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred eEEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 122456777553 789999999999999999998876544
No 184
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=90.74 E-value=1.1 Score=34.11 Aligned_cols=46 Identities=22% Similarity=0.416 Sum_probs=35.6
Q ss_pred CCceEEEEEEc----CCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEc
Q 013389 114 NGLTALELTGT----DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164 (444)
Q Consensus 114 ~~~t~i~v~~~----DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d 164 (444)
.+...|.|.|+ |.||++++++..|++.|+||.... | ...+.+.|..
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~ 53 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE 53 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence 34567888888 799999999999999999998666 3 4456666665
No 185
>PRK06382 threonine dehydratase; Provisional
Probab=90.68 E-value=3.4 Score=43.11 Aligned_cols=65 Identities=25% Similarity=0.227 Sum_probs=46.2
Q ss_pred CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-----eCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-----HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-----~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
..+.+.|.-+|+||-|++++.+|+++|+||.+..... ..+...-+|.|... +++..+.|.+.|++
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~ 398 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE 398 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 4689999999999999999999999999998876541 13445445555442 23344456666654
No 186
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=90.47 E-value=4.5 Score=46.14 Aligned_cols=106 Identities=10% Similarity=0.143 Sum_probs=69.4
Q ss_pred CCeEEEEEEcc---CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc-
Q 013389 245 RSYSVVNVQCK---DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR- 320 (444)
Q Consensus 245 ~~~tvv~V~~~---DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r- 320 (444)
++.+.|+|.+. ++||+++++..+|.+.|++|......+ ....-.|.|...+. +...+.|.+.+...+..
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss--Se~sIsf~V~~~d~-----~~av~~L~~~f~~el~~~ 385 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS--SEYSISFCVPQSDA-----AKAKRALEEEFALELKEG 385 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC--CCceEEEEEeHHHH-----HHHHHHHHHHHHHHhccC
Confidence 56788999865 689999999999999999997654333 22223466653211 11223333333222221
Q ss_pred CC------CCceEEEEEec---CCCchHHHHHHHHHHCCceEEEEE
Q 013389 321 RA------SEGVRLELCME---DRQGLLADVTRTFRENGLNVTRAE 357 (444)
Q Consensus 321 r~------~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A~ 357 (444)
.. ..-..|.|.+. ++||+++++..+|.+.|++|....
T Consensus 386 ~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 386 LLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred CcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 11 22356777776 789999999999999999998664
No 187
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=90.25 E-value=4.2 Score=46.39 Aligned_cols=109 Identities=13% Similarity=0.170 Sum_probs=72.0
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccC--
Q 013389 33 PTATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY-- 107 (444)
Q Consensus 33 ~~~t~V~v~~~---dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~-- 107 (444)
.+.+.|+|.+. +++|+++++...|+++|++|.-...++.. .- ..|.|...+. +...+.|++.+.....
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe-~s-Isf~V~~~d~-----~~av~~L~~~f~~el~~~ 385 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE-YS-ISFCVPQSDA-----AKAKRALEEEFALELKEG 385 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC-ce-EEEEEeHHHH-----HHHHHHHHHHHHHHhccC
Confidence 45677888764 67999999999999999999766554322 11 2355554221 2234445554432111
Q ss_pred -CCC-CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEEE
Q 013389 108 -GRS-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAK 148 (444)
Q Consensus 108 -~~~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~ 148 (444)
... ....+...|.|.|. ++||+++++..+|++.|+||....
T Consensus 386 ~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 386 LLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred CcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 011 12345678888886 789999999999999999998543
No 188
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=90.10 E-value=1.4 Score=48.88 Aligned_cols=74 Identities=20% Similarity=0.162 Sum_probs=52.2
Q ss_pred EEEEecC-CCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCC-EEEEEEEEEeCCCCCCCCHHHHHHHHHHH
Q 013389 237 VTVQNWA-DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGE-RAYLEFYIRHIDGTPISSEPERQRVIQCL 314 (444)
Q Consensus 237 V~v~~~~-~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~-~a~d~F~V~~~~g~~l~~~~~~~~l~~~L 314 (444)
|.|+... ..-...|.|.+.||+|||.+|+.+|+.++.||......+.++ .+.-.|-+.-. +-..+.+|...|
T Consensus 616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~------n~~~L~~i~~~l 689 (701)
T COG0317 616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVK------NLNHLGRVLARL 689 (701)
T ss_pred EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEEC------cHHHHHHHHHHH
Confidence 4555543 345568999999999999999999999999999998887644 44444444322 223566776666
Q ss_pred HH
Q 013389 315 EA 316 (444)
Q Consensus 315 ~~ 316 (444)
.+
T Consensus 690 ~~ 691 (701)
T COG0317 690 KQ 691 (701)
T ss_pred hc
Confidence 43
No 189
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=90.07 E-value=0.77 Score=44.21 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=45.3
Q ss_pred CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEE--EEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIAS--LIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (444)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~d--vf~V~d~~~g~~i~~~~r~~~i~~~L~~vL 188 (444)
....|.+...|.||.+++|+++|+..|.||.+.-+--....... ++.+... +.-+++.+++|++..
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gt--------d~VveQa~rQiedlV 143 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGT--------DGVVEQARRQIEDLV 143 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEecc--------HHHHHHHHHHHHHhh
Confidence 45678888999999999999999999999999877654333333 4444431 133455555555433
No 190
>PRK14630 hypothetical protein; Provisional
Probab=89.82 E-value=2.5 Score=37.60 Aligned_cols=95 Identities=5% Similarity=-0.006 Sum_probs=66.5
Q ss_pred CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q 013389 256 DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCMEDR 335 (444)
Q Consensus 256 DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~DR 335 (444)
|.-.+-..+..++..+|+.+.+......++.-.-..||...+| ++- +.++.+.+.+...|+...+..|.|||+++.=
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g--V~i-dDC~~vSr~i~~~ld~~i~~~Y~LEVSSPGl 82 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKIQIVLYKKDS--FGV-DTLCDLHKMILLILEAVLKYNFSLEISTPGI 82 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCC--CCH-HHHHHHHHHHHHHhcccCCCCeEEEEeCCCC
Confidence 4455667778889999999999998876653334556665555 333 3799999999888876556789999997733
Q ss_pred CchHHHHHHHHHHCCceE
Q 013389 336 QGLLADVTRTFRENGLNV 353 (444)
Q Consensus 336 pGLL~~Itr~l~e~gl~I 353 (444)
---|...-++-+-.|=.|
T Consensus 83 dRpL~~~~df~r~~G~~v 100 (143)
T PRK14630 83 NRKIKSDREFKIFEGKKI 100 (143)
T ss_pred CCcCCCHHHHHHhCCCEE
Confidence 333666666666666443
No 191
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.75 E-value=0.66 Score=48.50 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=43.9
Q ss_pred CCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEE
Q 013389 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVK 163 (444)
Q Consensus 114 ~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~ 163 (444)
.....|.+.-.|+||.++.|+.+|+++|+||.+.+.+..++.+..+|-+.
T Consensus 336 ~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D 385 (409)
T PRK11790 336 PGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVD 385 (409)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeC
Confidence 36688999999999999999999999999999999988887777776553
No 192
>PRK06349 homoserine dehydrogenase; Provisional
Probab=89.59 E-value=1.6 Score=45.77 Aligned_cols=65 Identities=26% Similarity=0.358 Sum_probs=49.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~ 393 (444)
.+.|.+...|+||.|++|+.+|.++|+||.+..-....+.....+++++.. +...++++.++|.+
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~----~e~~l~~~i~~L~~ 412 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHET----SEAALRAALAAIEA 412 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeC----CHHHHHHHHHHHhc
Confidence 467888999999999999999999999999887654433556777777532 23556666666665
No 193
>PRK14646 hypothetical protein; Provisional
Probab=89.40 E-value=4.2 Score=36.64 Aligned_cols=94 Identities=14% Similarity=0.114 Sum_probs=68.4
Q ss_pred cHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc--CCCCceEEEEEecCCC
Q 013389 259 KLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR--RASEGVRLELCMEDRQ 336 (444)
Q Consensus 259 GLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r--r~~~~~~lev~~~DRp 336 (444)
.+...+..++..+|+.+.+..+...++...-..||..++|..++-+ .++.+.+.|.+.|+. ..+..|.|||+++-=-
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtld-DC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGld 86 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLD-DCALFNTPASEEIENSNLLNCSYVLEISSQGVS 86 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHH-HHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCCC
Confidence 4666778889999999999999987764444566655544445433 799999999998863 3456899999987444
Q ss_pred chHHHHHHHHHHCCceE
Q 013389 337 GLLADVTRTFRENGLNV 353 (444)
Q Consensus 337 GLL~~Itr~l~e~gl~I 353 (444)
--|..--.+-+-.|-.|
T Consensus 87 RpL~~~~df~r~~G~~v 103 (155)
T PRK14646 87 DELTSERDFKTFKGFPV 103 (155)
T ss_pred CcCCCHHHHHHhCCCEE
Confidence 44777777777777655
No 194
>PRK09181 aspartate kinase; Validated
Probab=89.37 E-value=6.1 Score=42.16 Aligned_cols=104 Identities=14% Similarity=0.153 Sum_probs=66.4
Q ss_pred CeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCC
Q 013389 34 TATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS 110 (444)
Q Consensus 34 ~~t~V~v~~~---dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~ 110 (444)
+.+.|+|.+. +.+|+++++.+.|++.|++|. .+.+... -..|.|.+. ..+ -.+.++.|++.+....-
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~~--sis~~v~~~-~~~--~~~~~~~L~~~~~~~~i--- 397 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNAN--TITHYLWGS-LKT--LKRVIAELEKRYPNAEV--- 397 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecCc--EEEEEEcCC-hHH--HHHHHHHHHHhcCCceE---
Confidence 5667777554 689999999999999999997 3333221 123555432 100 01223334333321100
Q ss_pred CCCCCceEEEEEEcC--CcchHHHHHHHHHHCCCeEEEEE
Q 013389 111 NSFNGLTALELTGTD--RVGLLSEVFAVLADLQCSVVEAK 148 (444)
Q Consensus 111 ~~~~~~t~i~v~~~D--rpGLl~~i~~vL~~~~~~I~~A~ 148 (444)
. ..+...|.+.|.. +||+.+++..+|++.|+||..-.
T Consensus 398 ~-~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~ 436 (475)
T PRK09181 398 T-VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH 436 (475)
T ss_pred E-ECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE
Confidence 1 2456788888865 89999999999999999998433
No 195
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=89.30 E-value=2.3 Score=33.12 Aligned_cols=47 Identities=11% Similarity=0.198 Sum_probs=36.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCC-eEEEEEEEEc
Q 013389 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG-RIASLIYVKD 164 (444)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~-~~~dvf~V~d 164 (444)
.+.+..+|+||-|+++-.+|+.+|+|+..-+..-..+ ...=.|||.=
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~ 49 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC 49 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence 4556668999999999999999999999877665433 3344677765
No 196
>PLN02551 aspartokinase
Probab=89.08 E-value=9.8 Score=41.12 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=66.5
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHH-HHHHHHhhhccCC
Q 013389 33 PTATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVI-SYIEQSLETIHYG 108 (444)
Q Consensus 33 ~~~t~V~v~~~---dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~-~~i~~aL~~~~~~ 108 (444)
.+.+.|+|.+. +++|.++++...|+++|++|.-.. ++.. -..|.|...+-. ..+.+ +.+++.+.....+
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is-sSe~---sIs~~v~~~~~~---~~~~i~~~l~~l~~el~~~ 436 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA-TSEV---SISLTLDPSKLW---SRELIQQELDHLVEELEKI 436 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe-ccCC---EEEEEEehhHhh---hhhhHHHHHHHHHHHhhcC
Confidence 34567788765 589999999999999999998663 2222 123555443211 11111 1122111111101
Q ss_pred CC-CCCCCceEEEEEEc--CCcchHHHHHHHHHHCCCeEEEEE
Q 013389 109 RS-NSFNGLTALELTGT--DRVGLLSEVFAVLADLQCSVVEAK 148 (444)
Q Consensus 109 ~~-~~~~~~t~i~v~~~--DrpGLl~~i~~vL~~~~~~I~~A~ 148 (444)
.. ....+...|.|.|. ..||+++++..+|+..|+||....
T Consensus 437 ~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIs 479 (521)
T PLN02551 437 AVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMIS 479 (521)
T ss_pred CeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEE
Confidence 11 12345667777765 689999999999999999998544
No 197
>PRK08818 prephenate dehydrogenase; Provisional
Probab=88.62 E-value=0.91 Score=46.80 Aligned_cols=49 Identities=20% Similarity=0.341 Sum_probs=38.2
Q ss_pred ceEEEEEec-CCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcC
Q 013389 325 GVRLELCME-DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDE 374 (444)
Q Consensus 325 ~~~lev~~~-DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~ 374 (444)
.+.+-+.-+ |+||.|++|+.+|.++|+||++.++ .....-.-.|||.-.
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~ 344 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFE 344 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEe
Confidence 456667775 9999999999999999999999999 343334444998533
No 198
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=88.62 E-value=11 Score=39.74 Aligned_cols=107 Identities=18% Similarity=0.190 Sum_probs=65.9
Q ss_pred CeEEEEEEeCCC--ccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCC-
Q 013389 34 TATLVKVDSARR--HGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS- 110 (444)
Q Consensus 34 ~~t~V~v~~~dr--~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~- 110 (444)
+...|+|.+.+- +|+++++.+.|.++|++|.-....+.. .. ..|.|...+. +...+.|.. +........
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se-~s-Is~~I~~~~~-----~~a~~~L~~-~~~~~~~~~I 372 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE-TS-ISFTVDKEDA-----DQAKTLLKS-ELNLSALSSV 372 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC-ce-EEEEEEHHHH-----HHHHHHHHH-HHHhcCcceE
Confidence 455666665433 699999999999999999876543322 11 2344543211 112222221 111100011
Q ss_pred CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEEE
Q 013389 111 NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAK 148 (444)
Q Consensus 111 ~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~ 148 (444)
....+...|.+.|. +.||+++++..+|+..|+||....
T Consensus 373 ~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 373 EVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred EEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 22345678888764 789999999999999999997654
No 199
>PRK14634 hypothetical protein; Provisional
Probab=88.60 E-value=4 Score=36.80 Aligned_cols=95 Identities=17% Similarity=0.102 Sum_probs=66.9
Q ss_pred ccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc--CCCCceEEEEEecCC
Q 013389 258 TKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR--RASEGVRLELCMEDR 335 (444)
Q Consensus 258 pGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r--r~~~~~~lev~~~DR 335 (444)
+.+-.-+..++..+|+.+.+..+...++...-..||..++|..++-+ .++.+.+.|.+.|+. ..+..|.|||+++-=
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~ld-dC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl 85 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLD-DCAGFSGPMGEALEASQLLTEAYVLEISSPGI 85 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHH-HHHHHHHHHHHHhcccccCCCCeEEEEeCCCC
Confidence 45666677789999999999999887654444566766667445543 799999999988864 235679999998733
Q ss_pred CchHHHHHHHHHHCCceE
Q 013389 336 QGLLADVTRTFRENGLNV 353 (444)
Q Consensus 336 pGLL~~Itr~l~e~gl~I 353 (444)
---|..--++-+-.|-.|
T Consensus 86 dRpL~~~~~f~r~~G~~V 103 (155)
T PRK14634 86 GDQLSSDRDFQTFRGFPV 103 (155)
T ss_pred CCcCCCHHHHHHhCCCeE
Confidence 333666666666666443
No 200
>PLN02317 arogenate dehydratase
Probab=88.57 E-value=1.9 Score=44.44 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=48.6
Q ss_pred eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCce---------------EEEEEEEEcCCCCCCChHHHHHHHHH
Q 013389 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDE---------------ALNIFYVTDEMGNPADPKIIEAVRQK 390 (444)
Q Consensus 326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~---------------a~d~FyV~d~~g~~v~~~~~~~lr~~ 390 (444)
+.|-+.-.|+||.|+++-.+|+.+|||+++.+..-...+ -.=.||| |.+|..-+ ..++..-++
T Consensus 284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~~d-~~~~~aL~~ 361 (382)
T PLN02317 284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASMAD-PRAQNALAH 361 (382)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEcCcCC-HHHHHHHHH
Confidence 567777789999999999999999999999998755433 3457888 66676544 333444445
Q ss_pred Hhhcc
Q 013389 391 IGLSN 395 (444)
Q Consensus 391 l~~~~ 395 (444)
|.+..
T Consensus 362 L~~~~ 366 (382)
T PLN02317 362 LQEFA 366 (382)
T ss_pred HHHhc
Confidence 55433
No 201
>PRK06382 threonine dehydratase; Provisional
Probab=88.54 E-value=2 Score=44.86 Aligned_cols=82 Identities=18% Similarity=0.188 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhccCCCCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEee----cC-CceEEEEEEEEcCCCCCCChH
Q 013389 308 QRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVS----TE-RDEALNIFYVTDEMGNPADPK 382 (444)
Q Consensus 308 ~~l~~~L~~al~rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~----T~-g~~a~d~FyV~d~~g~~v~~~ 382 (444)
..+.+.+...+. ...+.+.++|.-+||||-|.+|+++|.++|+||.+.... .. .+.+.=+|.|. .. ++.
T Consensus 314 ~~~~~~~~~~~~-~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~ve-t~----~~~ 387 (406)
T PRK06382 314 LLMSKIIYKELE-NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVN-VR----GQD 387 (406)
T ss_pred HHHHHHHHHHHH-hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEE-eC----CHH
Confidence 345555544442 122357899999999999999999999999999987764 11 22344444442 21 224
Q ss_pred HHHHHHHHHhhcc
Q 013389 383 IIEAVRQKIGLSN 395 (444)
Q Consensus 383 ~~~~lr~~l~~~~ 395 (444)
..++|.+.|.+.-
T Consensus 388 ~~~~v~~~L~~~G 400 (406)
T PRK06382 388 HLDRILNALREMG 400 (406)
T ss_pred HHHHHHHHHHHCC
Confidence 4557777776643
No 202
>PRK14636 hypothetical protein; Provisional
Probab=88.18 E-value=4.6 Score=37.21 Aligned_cols=97 Identities=11% Similarity=0.054 Sum_probs=67.0
Q ss_pred CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc--CCCCceEEEEEec
Q 013389 256 DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR--RASEGVRLELCME 333 (444)
Q Consensus 256 DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r--r~~~~~~lev~~~ 333 (444)
|.+.+..-+..++..+|+.+.+..+...++...-..||.++++..++-+ .++++.+.|.+.|.. ..+..|.|||+++
T Consensus 3 ~~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lD-DC~~vSr~Is~~LD~~d~i~~~Y~LEVSSP 81 (176)
T PRK14636 3 DIAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIE-DCAALSRRLSDVFDELDPIEDAYRLEVSSP 81 (176)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHH-HHHHHHHHHHHHhccCcCCCCCeEEEEeCC
Confidence 3445666778889999999999999887654444455655543335433 799999999998863 3456899999987
Q ss_pred CCCchHHHHHHHHHHCCceE
Q 013389 334 DRQGLLADVTRTFRENGLNV 353 (444)
Q Consensus 334 DRpGLL~~Itr~l~e~gl~I 353 (444)
-=---|..--.+-+-.|-.|
T Consensus 82 GldRpL~~~~df~r~~G~~V 101 (176)
T PRK14636 82 GIDRPLTRPKDFADWAGHEA 101 (176)
T ss_pred CCCCCCCCHHHHHHhCCCeE
Confidence 33333655666666666544
No 203
>PLN02551 aspartokinase
Probab=87.67 E-value=14 Score=39.93 Aligned_cols=133 Identities=17% Similarity=0.209 Sum_probs=79.6
Q ss_pred CCCeEEEEEEcc---CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHH---HH
Q 013389 244 DRSYSVVNVQCK---DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLE---AA 317 (444)
Q Consensus 244 ~~~~tvv~V~~~---DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~---~a 317 (444)
.++.+.|+|.+. +.||+++++...|.++|++|..- .+.. ..-.|.|...+-. ..+.+++.|. ..
T Consensus 363 ~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~~~~~------~~~~i~~~l~~l~~e 432 (521)
T PLN02551 363 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDPSKLW------SRELIQQELDHLVEE 432 (521)
T ss_pred CCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEehhHhh------hhhhHHHHHHHHHHH
Confidence 345678888766 68999999999999999999875 3322 2334666543211 1122222222 12
Q ss_pred hcc--C---CCCceEEEEEec--CCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHH
Q 013389 318 VGR--R---ASEGVRLELCME--DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQK 390 (444)
Q Consensus 318 l~r--r---~~~~~~lev~~~--DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~ 390 (444)
|.+ + ...-..|.|.+. .++|+++++..+|.++|+||......+ ...+.-+|.+.. .. .+.+..|.++
T Consensus 433 l~~~~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga---SeinIS~vV~~~--d~-~~Av~aLH~~ 506 (521)
T PLN02551 433 LEKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA---SKVNISLIVNDD--EA-EQCVRALHSA 506 (521)
T ss_pred hhcCCeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC---CCcEEEEEEeHH--HH-HHHHHHHHHH
Confidence 321 0 122345666654 689999999999999999998766543 334443343321 10 1345566666
Q ss_pred Hh
Q 013389 391 IG 392 (444)
Q Consensus 391 l~ 392 (444)
|.
T Consensus 507 Ff 508 (521)
T PLN02551 507 FF 508 (521)
T ss_pred Hh
Confidence 53
No 204
>PRK06545 prephenate dehydrogenase; Validated
Probab=87.62 E-value=1.9 Score=44.21 Aligned_cols=51 Identities=16% Similarity=0.272 Sum_probs=40.9
Q ss_pred CCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEE
Q 013389 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVK 163 (444)
Q Consensus 113 ~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~ 163 (444)
....+.|.|.-+|+||-+++|+..|+..|+||.+.+|.-..+...-++.+.
T Consensus 287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~ 337 (359)
T PRK06545 287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS 337 (359)
T ss_pred CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence 346799999999999999999999999999999999965444443444333
No 205
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.43 E-value=4.3 Score=32.40 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=22.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHCCCeEEE
Q 013389 118 ALELTGTDRVGLLSEVFAVLADLQCSVVE 146 (444)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~ 146 (444)
.+.|.-+|+||-|++++.+|+ +.||..
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~ 29 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITE 29 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeE
Confidence 467888999999999999999 566664
No 206
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=87.26 E-value=2.2 Score=38.64 Aligned_cols=66 Identities=20% Similarity=0.299 Sum_probs=46.2
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (444)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~ 189 (444)
..+.+.-.|.||.|+++++.|+..|.||.+-.+--. +....=.-.|.. | |+..+++|.++|.+...
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g----~~~~~EQi~kQL~kLid 71 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---G----DEQVLEQIIKQLNKLID 71 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---C----CcchHHHHHHHHHhhcc
Confidence 467788899999999999999999999999777643 222222223333 1 23456778888777554
No 207
>PRK14645 hypothetical protein; Provisional
Probab=87.26 E-value=7 Score=35.22 Aligned_cols=95 Identities=22% Similarity=0.260 Sum_probs=67.1
Q ss_pred CccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC--CCCceEEEEEecC
Q 013389 257 RTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR--ASEGVRLELCMED 334 (444)
Q Consensus 257 RpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~D 334 (444)
...+-..+..++..+|+.+.+..+...++.-.-..+|...+|..++-+ .++.+.+.|.+.|+.. .+..|.|||+++-
T Consensus 8 ~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~ld-dC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG 86 (154)
T PRK14645 8 NPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVE-DLERASRALEAELDRLDPIEGEYRLEVESPG 86 (154)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHH-HHHHHHHHHHHHhcccccCCCceEEEEeCCC
Confidence 344666778889999999999999887653333455654445445543 7999999999988643 3567999999874
Q ss_pred CCchHHHHHHHHHHCCce
Q 013389 335 RQGLLADVTRTFRENGLN 352 (444)
Q Consensus 335 RpGLL~~Itr~l~e~gl~ 352 (444)
=---|...-.+-+-.|-.
T Consensus 87 ldRpL~~~~df~r~~G~~ 104 (154)
T PRK14645 87 PKRPLFTARHFERFAGLK 104 (154)
T ss_pred CCCCCCCHHHHHHhCCCE
Confidence 433477777777777744
No 208
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=87.12 E-value=12 Score=39.35 Aligned_cols=102 Identities=16% Similarity=0.209 Sum_probs=65.1
Q ss_pred CCeEEEEEEccCC--ccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC-
Q 013389 245 RSYSVVNVQCKDR--TKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR- 321 (444)
Q Consensus 245 ~~~tvv~V~~~DR--pGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr- 321 (444)
++...|+|.+.+- ||++.++..+|.++|++|....-.+. + ..-.|.|... ..++..+.|.......
T Consensus 300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~s-e-~sIs~~I~~~---------~~~~a~~~L~~~~~~~~ 368 (441)
T TIGR00657 300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSS-E-TSISFTVDKE---------DADQAKTLLKSELNLSA 368 (441)
T ss_pred CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCC-C-ceEEEEEEHH---------HHHHHHHHHHHHHHhcC
Confidence 3566778776443 79999999999999999987642222 2 2223555432 1222222232211111
Q ss_pred ------CCCceEEEEEe---cCCCchHHHHHHHHHHCCceEEEEE
Q 013389 322 ------ASEGVRLELCM---EDRQGLLADVTRTFRENGLNVTRAE 357 (444)
Q Consensus 322 ------~~~~~~lev~~---~DRpGLL~~Itr~l~e~gl~I~~A~ 357 (444)
...-..+.|.+ .++||++++|.+.|++.|++|....
T Consensus 369 ~~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 369 LSSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred cceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 12235677754 3789999999999999999997775
No 209
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=87.02 E-value=1.6 Score=42.15 Aligned_cols=70 Identities=17% Similarity=0.312 Sum_probs=50.4
Q ss_pred CceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEE--EEEEEcCCCCCCChHHHHHHHHHHhhccccccc
Q 013389 324 EGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALN--IFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE 400 (444)
Q Consensus 324 ~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d--~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~ 400 (444)
+...+.+.-.|-||+|++|+-+|+.+|.||.++-+.-...++-- +-.+. |. ++.+++.+++|.+ +++|-+
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~---Gt---d~VveQa~rQied-lVnV~a 147 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQ---GT---DGVVEQARRQIED-LVNVYA 147 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEe---cc---HHHHHHHHHHHHH-hhhhhe
Confidence 36789999999999999999999999999999988644343332 22232 21 3667778888777 444443
No 210
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=86.81 E-value=11 Score=38.83 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=43.9
Q ss_pred ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEE---ee--CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW---TH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~---T~--~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
...+.|.-+|+||.|++++..++++|.||.+..-. .. .+.+.-.+.+... +++..+.|.+.|++
T Consensus 305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-------~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-------GKEHLDEILKILRD 373 (380)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 46899999999999999999999999999987543 11 2343333444331 23455566666654
No 211
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.11 E-value=5.8 Score=31.64 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=37.8
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhc
Q 013389 37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETI 105 (444)
Q Consensus 37 ~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~ 105 (444)
++.|.-+||||-|++++.+|+ +.||....-.. ..+.+.-.+.+..++| ++-.+.+.++|...
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~-----~~~~~~i~~~L~~~ 65 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG-----AEELAELLEDLKSA 65 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc-----HHHHHHHHHHHHHC
Confidence 578899999999999999999 67777444332 2232222222222221 34456666677654
No 212
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=85.89 E-value=4.6 Score=41.61 Aligned_cols=84 Identities=14% Similarity=0.228 Sum_probs=53.5
Q ss_pred HHHHHHHHHhccCCCCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeec-----CCceEEEEEEEEcCCCCCCChHH
Q 013389 309 RVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVST-----ERDEALNIFYVTDEMGNPADPKI 383 (444)
Q Consensus 309 ~l~~~L~~al~rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T-----~g~~a~d~FyV~d~~g~~v~~~~ 383 (444)
.+...++..+.+ ..+...+.|.-+||||.|+++++.+.+.|.||....-.. .-+++.=.+.+ +..+ ...
T Consensus 290 ~l~~vi~~gl~~-~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~v-et~~----~~~ 363 (380)
T TIGR01127 290 LLNKIIEKGLVK-SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITL-ETRG----KEH 363 (380)
T ss_pred HHHHHHHHHHHh-CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEE-EeCC----HHH
Confidence 444444444432 223468999999999999999999999999998885541 12233333333 3322 356
Q ss_pred HHHHHHHHhhccccc
Q 013389 384 IEAVRQKIGLSNLKV 398 (444)
Q Consensus 384 ~~~lr~~l~~~~~~~ 398 (444)
.+.|.+.|.+.-..|
T Consensus 364 ~~~i~~~L~~~G~~v 378 (380)
T TIGR01127 364 LDEILKILRDMGYNF 378 (380)
T ss_pred HHHHHHHHHHcCCcc
Confidence 678888877654443
No 213
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.68 E-value=3.3 Score=32.41 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=36.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEc
Q 013389 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKD 164 (444)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d 164 (444)
.+.+..+|+||-|+++-.+|+.+|+|+..-+..-. +....-.|||.-
T Consensus 2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~ 49 (74)
T cd04929 2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC 49 (74)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 35566689999999999999999999998777653 334445677765
No 214
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=85.34 E-value=2.2 Score=46.11 Aligned_cols=61 Identities=26% Similarity=0.482 Sum_probs=45.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC--CceEEEEEEEEcCCCCCCChHHHHHHHH
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE--RDEALNIFYVTDEMGNPADPKIIEAVRQ 389 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~FyV~d~~g~~v~~~~~~~lr~ 389 (444)
++.+=+.-.|+||.+..|+.+|.++++||....+.-. |+.+.-++-+ ..+++++.+++|++
T Consensus 452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~----D~~v~~~~l~~i~~ 514 (526)
T PRK13581 452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV----DDPVPEEVLEELRA 514 (526)
T ss_pred ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC----CCCCCHHHHHHHhc
Confidence 3455556799999999999999999999999998753 3444444433 34666677777774
No 215
>PRK08198 threonine dehydratase; Provisional
Probab=85.29 E-value=6.2 Score=40.99 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=32.8
Q ss_pred CCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEE
Q 013389 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW 150 (444)
Q Consensus 114 ~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~ 150 (444)
.....+.|.-+|+||-|+++..+++..|.||.+....
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 3456899999999999999999999999999987654
No 216
>PRK06349 homoserine dehydrogenase; Provisional
Probab=85.04 E-value=3.9 Score=42.94 Aligned_cols=51 Identities=22% Similarity=0.215 Sum_probs=41.1
Q ss_pred CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcC
Q 013389 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDC 165 (444)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~ 165 (444)
..+-|.+...|+||.|++|+++|+++++||.+.......+....++++++.
T Consensus 347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~ 397 (426)
T PRK06349 347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE 397 (426)
T ss_pred eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe
Confidence 457888999999999999999999999999987655444455567777774
No 217
>PRK12483 threonine dehydratase; Reviewed
Probab=84.91 E-value=47 Score=35.94 Aligned_cols=142 Identities=11% Similarity=0.088 Sum_probs=89.4
Q ss_pred CCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHH-HHHHHHHHHH-h----
Q 013389 245 RSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPER-QRVIQCLEAA-V---- 318 (444)
Q Consensus 245 ~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~-~~l~~~L~~a-l---- 318 (444)
.....+.|.-+||||-|.+++.+|... ||.+-.-......-..++......+ .+.. +.|.+.|++. .
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~-----~~~~~~~i~~~l~~~g~~~~d 415 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHP-----RHDPRAQLLASLRAQGFPVLD 415 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCC-----hhhhHHHHHHHHHHCCCCeEE
Confidence 456788899999999999999999988 7765444333322233343333322 2244 7788888652 1
Q ss_pred ---------------ccCCC---CceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCC
Q 013389 319 ---------------GRRAS---EGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPAD 380 (444)
Q Consensus 319 ---------------~rr~~---~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~ 380 (444)
.++.+ +--.+-+.-+.|||=|.++.+.|..+ -||+..+=.-.|+....+|.=-. +.
T Consensus 416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~-~niTeF~YR~~~~~~a~v~vgi~-----~~ 489 (521)
T PRK12483 416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPR-WNISLFHYRNHGAADGRVLAGLQ-----VP 489 (521)
T ss_pred CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCC-cceeeeeecCCCCCceEEEEEEe-----eC
Confidence 11232 23467888899999999999998852 35555555445667777775322 22
Q ss_pred hHHHHHHHHHHhhcccccc
Q 013389 381 PKIIEAVRQKIGLSNLKVK 399 (444)
Q Consensus 381 ~~~~~~lr~~l~~~~~~~~ 399 (444)
++..+.+.+.|.+.-..+.
T Consensus 490 ~~~~~~~~~~l~~~gy~~~ 508 (521)
T PRK12483 490 EDERAALDAALAALGYPYW 508 (521)
T ss_pred hhHHHHHHHHHHHCCCCeE
Confidence 3556778787776544443
No 218
>PRK06545 prephenate dehydrogenase; Validated
Probab=84.74 E-value=2.5 Score=43.26 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=40.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEE
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVT 372 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~ 372 (444)
.+.|.|.-+||||-|+.|+..|.+.|+||.+.+|.-.-|....++.++
T Consensus 290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~ 337 (359)
T PRK06545 290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS 337 (359)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence 478999999999999999999999999999999965556666666665
No 219
>PRK14637 hypothetical protein; Provisional
Probab=84.27 E-value=11 Score=33.91 Aligned_cols=93 Identities=11% Similarity=0.038 Sum_probs=65.0
Q ss_pred CccHHHHHHHHHHhCCeeEEEEEEEecCC-EEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCC-CCceEEEEEecC
Q 013389 257 RTKLLFDVVCTLTDMEYVVFHATINTAGE-RAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRA-SEGVRLELCMED 334 (444)
Q Consensus 257 RpGLL~~i~~~L~~~~~nI~~A~I~T~g~-~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~-~~~~~lev~~~D 334 (444)
--|....+..++.++|+.+.+-.+...++ +... .+|...+| ++- +.++.+.+.|.++|+.-. ...+.|||+++-
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lr-V~ID~~~g--V~i-ddC~~vSr~Is~~LD~~~~~~~y~LEVSSPG 82 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVR-AVIYSAGG--VGL-DDCARVHRILVPRLEALGGVRDVFLEVSSPG 82 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEE-EEEECCCC--CCH-HHHHHHHHHHHHHhcccccccCcEEEEeCCC
Confidence 35777888999999999999999998765 4554 44544444 443 379999999888886422 346899999773
Q ss_pred CCchHHHHHHHHHHCCceE
Q 013389 335 RQGLLADVTRTFRENGLNV 353 (444)
Q Consensus 335 RpGLL~~Itr~l~e~gl~I 353 (444)
=--=|...-++-+-.|=.|
T Consensus 83 ldRpL~~~~~f~r~~G~~V 101 (151)
T PRK14637 83 IERVIKNAAEFSIFVGETV 101 (151)
T ss_pred CCCCCCCHHHHHHhCCCEE
Confidence 3333666666666666443
No 220
>PRK09224 threonine dehydratase; Reviewed
Probab=84.18 E-value=45 Score=35.88 Aligned_cols=139 Identities=13% Similarity=0.097 Sum_probs=86.4
Q ss_pred CCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH-h-----
Q 013389 245 RSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA-V----- 318 (444)
Q Consensus 245 ~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a-l----- 318 (444)
.....+.|.-+||||=|.+++.+|. +.||..-+-.-.+..-..+|+.....+. +.+.+.|.+.|++. .
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~l 399 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDL 399 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEEC
Confidence 4466888999999999999999999 5677654433333223334444333221 22377888888653 1
Q ss_pred --------------ccCCC---CceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCCh
Q 013389 319 --------------GRRAS---EGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADP 381 (444)
Q Consensus 319 --------------~rr~~---~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~ 381 (444)
.++.+ +-..+.+.=+.|||-|.+....|. -+-||+..+=.-.|...-.++ | |-.+.+
T Consensus 400 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr~~~~~~g~vl-v----gi~~~~ 473 (504)
T PRK09224 400 SDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYRNHGADYGRVL-A----GFQVPD 473 (504)
T ss_pred CCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEccCCcccccEE-E----EEecCh
Confidence 12332 234678888999999999988777 678998888853333322232 2 223323
Q ss_pred HHHHHHHHHHhhcc
Q 013389 382 KIIEAVRQKIGLSN 395 (444)
Q Consensus 382 ~~~~~lr~~l~~~~ 395 (444)
...+.+.+.|.+.-
T Consensus 474 ~~~~~~~~~l~~~~ 487 (504)
T PRK09224 474 ADEPEFEAFLDELG 487 (504)
T ss_pred hhHHHHHHHHHHcC
Confidence 35677777776643
No 221
>PRK11898 prephenate dehydratase; Provisional
Probab=84.18 E-value=4.2 Score=40.32 Aligned_cols=112 Identities=19% Similarity=0.260 Sum_probs=67.9
Q ss_pred HHhCCeeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEec-CCCchHHHHHHH
Q 013389 268 LTDMEYVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCME-DRQGLLADVTRT 345 (444)
Q Consensus 268 L~~~~~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~-DRpGLL~~Itr~ 345 (444)
....|+.|..-.|.... ++.. |+|......+. ........+.|-+... |+||-|+++-..
T Consensus 156 a~~ygL~il~~~I~d~~~N~TR--F~vi~~~~~~~----------------~~~~~~~ktslif~l~~~~pGsL~~~L~~ 217 (283)
T PRK11898 156 AELYGLEILAEDIQDYPNNRTR--FWLLGRKKPPP----------------PLRTGGDKTSLVLTLPNNLPGALYKALSE 217 (283)
T ss_pred HHHcCCcEehhcCCCCCccceE--EEEEEcCcccC----------------CCCCCCCeEEEEEEeCCCCccHHHHHHHH
Confidence 34568888877776643 3444 77764422100 0001111344555554 469999999999
Q ss_pred HHHCCceEEEEEeecCC-ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013389 346 FRENGLNVTRAEVSTER-DEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVK 399 (444)
Q Consensus 346 l~e~gl~I~~A~i~T~g-~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~ 399 (444)
|+++|+|+++.+..-.. ..-.=.||| |.+|.. ++..++.+-+.|.+....++
T Consensus 218 F~~~~INLt~IeSRP~~~~~~~y~F~v-d~eg~~-~~~~~~~al~~L~~~~~~~k 270 (283)
T PRK11898 218 FAWRGINLTRIESRPTKTGLGTYFFFI-DVEGHI-DDVLVAEALKELEALGEDVK 270 (283)
T ss_pred HHHCCCCeeeEecccCCCCCccEEEEE-EEEccC-CCHHHHHHHHHHHHhcCcEE
Confidence 99999999999997544 445667888 666765 33344444455555443444
No 222
>PRK12483 threonine dehydratase; Reviewed
Probab=84.12 E-value=40 Score=36.51 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=72.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC---
Q 013389 33 PTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG--- 108 (444)
Q Consensus 33 ~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~--- 108 (444)
.....+.|.-+||||-|.+++.+|... ||.+.+-.. ..+.+ -++....-.+ .+...+.|.++|......
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~-~v~v~ie~~~----~~~~~~~i~~~l~~~g~~~~d 415 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREA-HLFVGVQTHP----RHDPRAQLLASLRAQGFPVLD 415 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCee-EEEEEEEeCC----hhhhHHHHHHHHHHCCCCeEE
Confidence 355688899999999999999999988 888766543 22222 3343333222 122225666677554311
Q ss_pred -----------C------CCCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEE
Q 013389 109 -----------R------SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLI 160 (444)
Q Consensus 109 -----------~------~~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf 160 (444)
| +.....--.+.|.-|.|||-|.+.+.+|.. ..||..-+=--++...+-+|
T Consensus 416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~-~~niTeF~YR~~~~~~a~v~ 483 (521)
T PRK12483 416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGP-RWNISLFHYRNHGAADGRVL 483 (521)
T ss_pred CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCC-CcceeeeeecCCCCCceEEE
Confidence 1 111223346778889999999999999984 24555433322333444443
No 223
>PRK08818 prephenate dehydrogenase; Provisional
Probab=83.96 E-value=2.5 Score=43.66 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=38.0
Q ss_pred CceEEEEEEc-CCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEc
Q 013389 115 GLTALELTGT-DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164 (444)
Q Consensus 115 ~~t~i~v~~~-DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d 164 (444)
..+.|.+.-+ |+||-|++|..+|+.+|+||.+-++ .++.-..-.||+.-
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~ 343 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGF 343 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEE
Confidence 4677888886 9999999999999999999999999 33322222277765
No 224
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=83.95 E-value=53 Score=34.82 Aligned_cols=107 Identities=13% Similarity=0.205 Sum_probs=69.1
Q ss_pred CCeEEEEEEeCC---CccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCC
Q 013389 33 PTATLVKVDSAR---RHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGR 109 (444)
Q Consensus 33 ~~~t~V~v~~~d---r~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~ 109 (444)
.+.+.|+|.+.. ++|.++++.+.|.+.|+++.--.......+ ..|.|...+. ......+++.......
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~-- 375 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA-- 375 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc--
Confidence 344556655543 459999999999999999976555433333 3577665322 2233444444332210
Q ss_pred C-CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEEE
Q 013389 110 S-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAK 148 (444)
Q Consensus 110 ~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~ 148 (444)
+ ....+.-.|.+.|. ..||..+++..+|++.++||....
T Consensus 376 ~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is 418 (447)
T COG0527 376 EVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS 418 (447)
T ss_pred eEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence 0 12334556777765 578999999999999999999766
No 225
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=83.69 E-value=3.1 Score=37.71 Aligned_cols=69 Identities=28% Similarity=0.419 Sum_probs=49.8
Q ss_pred eEEEEEecCCCchHHHHHHHHHHCCceEEEEEee-cCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccc
Q 013389 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVS-TERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE 400 (444)
Q Consensus 326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~-T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~ 400 (444)
..+.+--.|.||.|+.++-.|+++|+||.+..+. |..+....+=.++. | ++..++++.++|... .+|-+
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~--g---~~~~~EQi~kQL~kL-idV~k 74 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS--G---DEQVLEQIIKQLNKL-IDVLK 74 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc--C---CcchHHHHHHHHHhh-cccee
Confidence 4577788999999999999999999999999885 44444443333432 3 346678888888873 34443
No 226
>PRK09084 aspartate kinase III; Validated
Probab=82.88 E-value=14 Score=39.10 Aligned_cols=101 Identities=19% Similarity=0.271 Sum_probs=62.4
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCC
Q 013389 33 PTATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGR 109 (444)
Q Consensus 33 ~~~t~V~v~~~---dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~ 109 (444)
.+...|+|.+. +.+|.++++.++|+++|++|.-... +... ..|.|...+-..-......+.+.+.|... .
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s-se~s---Is~~i~~~~~~~~~~~~~~~~l~~el~~~---~ 376 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT-SEVS---VSLTLDTTGSTSTGDTLLTQALLTELSQL---C 376 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec-cCcE---EEEEEechhhhhhhhHHHHHHHHHHHhcC---C
Confidence 45667888765 6899999999999999999987652 2221 23555542210000011223333334321 1
Q ss_pred C-CCCCCceEEEEEEc---CCcchHHHHHHHHHHC
Q 013389 110 S-NSFNGLTALELTGT---DRVGLLSEVFAVLADL 140 (444)
Q Consensus 110 ~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~ 140 (444)
+ ....+...|.+.|. ++||+++++..+|+..
T Consensus 377 ~i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~ 411 (448)
T PRK09084 377 RVEVEEGLALVALIGNNLSKACGVAKRVFGVLEPF 411 (448)
T ss_pred eEEEECCeEEEEEECCCcccCcChHHHHHHHHHhC
Confidence 1 12345678888886 7899999999999864
No 227
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=82.80 E-value=2.7 Score=45.40 Aligned_cols=61 Identities=20% Similarity=0.456 Sum_probs=45.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC--CceEEEEEEEEcCCCCCCChHHHHHHHH
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE--RDEALNIFYVTDEMGNPADPKIIEAVRQ 389 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~FyV~d~~g~~v~~~~~~~lr~ 389 (444)
+..+=+.-.||||.+..|+.+|.++++||....+.-. |+++.-++-+ ..+++++.+++|++
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~----D~~v~~~~l~~i~~ 513 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL----DQPVPDEVLEEIKA 513 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc----CCCCCHHHHHHHhc
Confidence 4455556689999999999999999999999888644 4555544433 33666677777775
No 228
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=82.69 E-value=2.3 Score=44.80 Aligned_cols=65 Identities=12% Similarity=0.166 Sum_probs=46.5
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEE--EEEEEEcCCCCCCC-hHHHHHHHHH
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEAL--NIFYVTDEMGNPAD-PKIIEAVRQK 390 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~--d~FyV~d~~g~~v~-~~~~~~lr~~ 390 (444)
.+.|-+...|+||-|+++-++|.++|+|+++.+..-...... =.||| |.+|..-+ .+.++.|++.
T Consensus 31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfV-D~Eg~~~~l~~aL~~Lk~~ 98 (464)
T TIGR01270 31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLV-DVELFHYGLQEAMDLLKSG 98 (464)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEE-EEEcCHHHHHHHHHHHHHh
Confidence 356666779999999999999999999999999976654433 47888 45555411 1344555543
No 229
>PRK14640 hypothetical protein; Provisional
Probab=82.51 E-value=14 Score=33.08 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=65.6
Q ss_pred cHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc--CCCCceEEEEEecCCC
Q 013389 259 KLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR--RASEGVRLELCMEDRQ 336 (444)
Q Consensus 259 GLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r--r~~~~~~lev~~~DRp 336 (444)
.+...+..++..+|+.+.+-.+...++.-.-..+|...+| ++- +.++.+.++|.++|+. ..+..|.|||+++-=-
T Consensus 7 ~i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~g--v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~ 83 (152)
T PRK14640 7 RLTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENG--VSV-ENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLD 83 (152)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC--CCH-HHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCC
Confidence 3455667789999999999999887653333455655555 443 3799999999998864 2356899999987444
Q ss_pred chHHHHHHHHHHCCceE
Q 013389 337 GLLADVTRTFRENGLNV 353 (444)
Q Consensus 337 GLL~~Itr~l~e~gl~I 353 (444)
--|...-++-+-.|-.|
T Consensus 84 RpL~~~~~f~r~~G~~v 100 (152)
T PRK14640 84 RPLFKVAQFEKYVGQEA 100 (152)
T ss_pred CcCCCHHHHHHhCCCeE
Confidence 44777777777777655
No 230
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=82.36 E-value=4 Score=44.03 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=33.7
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC
Q 013389 327 RLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER 362 (444)
Q Consensus 327 ~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g 362 (444)
.+||.|.||.|+..+|...|..+++++...+|...|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 589999999999999999999999999999997663
No 231
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=80.91 E-value=5.8 Score=41.63 Aligned_cols=63 Identities=25% Similarity=0.402 Sum_probs=46.5
Q ss_pred eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC-CceEEEEEEEEcCCCCCCCh---HHHHHHHHH
Q 013389 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE-RDEALNIFYVTDEMGNPADP---KIIEAVRQK 390 (444)
Q Consensus 326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~-g~~a~d~FyV~d~~g~~v~~---~~~~~lr~~ 390 (444)
+.|-+...|+||-|++|-++|.++|+|+++.+..-. +..-.=.||| |.+|.. ++ +.++.|++.
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFV-D~eg~~-~~~v~~aL~~Lk~~ 83 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFV-EFDEAS-DRKLEGVIEHLRQK 83 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEE-EEecCc-cHHHHHHHHHHHHh
Confidence 567777799999999999999999999999999654 3445667888 455654 22 344555543
No 232
>PRK14639 hypothetical protein; Provisional
Probab=80.63 E-value=15 Score=32.47 Aligned_cols=86 Identities=14% Similarity=0.165 Sum_probs=61.7
Q ss_pred HHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC--CCCceEEEEEecCCCchHHHH
Q 013389 265 VCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR--ASEGVRLELCMEDRQGLLADV 342 (444)
Q Consensus 265 ~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~DRpGLL~~I 342 (444)
-.++..+|+.+.+......++...-..+|....| ++- +.++++.+.|.+.|+.. .+..|.|||+++.----|...
T Consensus 4 ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g--v~i-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~~~ 80 (140)
T PRK14639 4 EALCKECGVSFYDDELVSENGRKIYRVYITKEGG--VNL-DDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSKI 80 (140)
T ss_pred hHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCC--CCH-HHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCcCCCH
Confidence 4568899999999999987764444555654444 443 37999999999988643 356799999987444446667
Q ss_pred HHHHHHCCceE
Q 013389 343 TRTFRENGLNV 353 (444)
Q Consensus 343 tr~l~e~gl~I 353 (444)
-.+-+-.|-.|
T Consensus 81 ~~f~r~~G~~v 91 (140)
T PRK14639 81 EHFAKSIGELV 91 (140)
T ss_pred HHHHHhCCCEE
Confidence 77777777665
No 233
>PRK11899 prephenate dehydratase; Provisional
Probab=80.40 E-value=8.9 Score=38.01 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=39.5
Q ss_pred ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEc
Q 013389 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKD 164 (444)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d 164 (444)
.|.|.+..+|+||.|+++-.+|+.+|+|+..-+..-. ++-..=.|||.-
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~ 243 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI 243 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE
Confidence 4778888899999999999999999999998777644 333444788876
No 234
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.87 E-value=16 Score=28.59 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=39.4
Q ss_pred EEEEE---ecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHH-HHHHHHhh
Q 013389 327 RLELC---MEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIE-AVRQKIGL 393 (444)
Q Consensus 327 ~lev~---~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~-~lr~~l~~ 393 (444)
.|.|. ..++||++++|...|.++|++|..... ++ ..=.|-|.. .....++.+. +|..+|..
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~---s~-~~iSftv~~--~d~~~~~~~~~~l~~~l~~ 67 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT---SE-ISVALTLDN--TGSTSDQLLTQALLKELSQ 67 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee---cC-CEEEEEEec--cccchhHHHHHHHHHHHHh
Confidence 45552 468899999999999999999998843 22 333444432 2222223443 67777776
No 235
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.82 E-value=9.4 Score=32.61 Aligned_cols=51 Identities=14% Similarity=0.155 Sum_probs=34.3
Q ss_pred EEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCC-EEEEEEEEEeCCCC
Q 013389 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGE-RAYLEFYIRHIDGT 299 (444)
Q Consensus 248 tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~-~a~d~F~V~~~~g~ 299 (444)
+.+.+..+|+||-|+++...|+.+|+|+.+-.-....+ .-.-.|||. .+|.
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfId-ieg~ 93 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVR-CEVH 93 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEE-EEeC
Confidence 45555559999999999999999999998744433322 122236664 4453
No 236
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.14 E-value=11 Score=29.37 Aligned_cols=57 Identities=23% Similarity=0.402 Sum_probs=38.4
Q ss_pred ecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389 332 MEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393 (444)
Q Consensus 332 ~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~ 393 (444)
..+.||++++|.++|.++|++|...-. ++ ..=.|-|.... .-++++.+++|.++|..
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~---s~-~~isftv~~~~-~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVST---SE-TNVTVSLDPDP-NGLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeCcc-cccchHHHHHHHHHHHh
Confidence 357899999999999999999998843 23 22334443222 11344467788888776
No 237
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=78.97 E-value=3.4 Score=37.24 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=41.7
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe---cCCeEEEEEEEEeCCCCCCCchHHHHHHHH
Q 013389 32 CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS---DGRFFMDVFHVTDLNGNKLTDESVISYIEQ 100 (444)
Q Consensus 32 ~~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t---~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~ 100 (444)
+-+..+|....++.||+++.+++.+++.|++|.++-..- .+.-.+ ..|++. ++ +..+++.|.+
T Consensus 92 G~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l--~IVte~---~i-P~~li~el~~ 157 (167)
T COG2150 92 GLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKL--TIVTER---PI-PGDLIDELKK 157 (167)
T ss_pred CCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceE--EEEEec---cC-CHHHHHHHhc
Confidence 334556666678899999999999999999999986532 122222 456653 22 3446666653
No 238
>PRK09224 threonine dehydratase; Reviewed
Probab=78.67 E-value=79 Score=34.02 Aligned_cols=109 Identities=15% Similarity=0.127 Sum_probs=70.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC----
Q 013389 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG---- 108 (444)
Q Consensus 34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~---- 108 (444)
.-..+.|.-+||||-|.+++.+|. +.||..-+-.- ..+.+ .+|....-.+. +.-.+.|.+.|......
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a-~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~l 399 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEA-HIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDL 399 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeE-EEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEEC
Confidence 456888999999999999999998 68888765542 22322 34443332221 11145566666554310
Q ss_pred ----------------CCCCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEE
Q 013389 109 ----------------RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW 150 (444)
Q Consensus 109 ----------------~~~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~ 150 (444)
++.....-..+.+.=|.|||-|.+...+|. -+.||..-+=.
T Consensus 400 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 400 SDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred CCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence 111122345677888999999999999777 78899877764
No 239
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=78.66 E-value=9.5 Score=37.73 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=39.8
Q ss_pred CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC-CeEEEEEEEEc
Q 013389 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD 164 (444)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~-~~~~dvf~V~d 164 (444)
..|.|.+..+|+||-|+++-++|+.+|+|...-+..-.. +-..=.|||.-
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~ 243 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI 243 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE
Confidence 478888888899999999999999999999877766443 33444677765
No 240
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=78.55 E-value=5.1 Score=41.08 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=45.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013389 327 RLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLS 394 (444)
Q Consensus 327 ~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~ 394 (444)
.+||.|.||.||..++-..|...++++...+|... ..-|+--+ .++.+..++|+.+|..+
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~-----~~IYln~p---~l~~~~fs~L~aei~~I 61 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-----GRIYLNFP---ELEFESFSSLMAEIRRI 61 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCC-----CeEEEecc---ccCHHHHHHHHHHHhcC
Confidence 58999999999999999999999999999999533 23455333 23345666666666653
No 241
>PRK14647 hypothetical protein; Provisional
Probab=78.42 E-value=20 Score=32.38 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC--CCCceEEEEEecCCCc
Q 013389 260 LLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR--ASEGVRLELCMEDRQG 337 (444)
Q Consensus 260 LL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~DRpG 337 (444)
+-..+..++..+||.+.+..+...++.-.-..+|....| ++- +.++.+.+.|.+.|+.. .++.|.|||+++-=--
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~~g--vsl-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~R 86 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVLRLFIDKEGG--VNL-DDCAEVSRELSEILDVEDFIPERYTLEVSSPGLDR 86 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEEEEEEeCCCC--CCH-HHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCCC
Confidence 444556779999999999999987753333455644444 332 37999999999988743 4568999999874333
Q ss_pred hHHHHHHHHHHCCceE
Q 013389 338 LLADVTRTFRENGLNV 353 (444)
Q Consensus 338 LL~~Itr~l~e~gl~I 353 (444)
-|...-++-+-.|-.|
T Consensus 87 pL~~~~~f~r~~G~~v 102 (159)
T PRK14647 87 PLKKEADYERYAGRLV 102 (159)
T ss_pred cCCCHHHHHHhCCcEE
Confidence 4666666666666554
No 242
>PLN02550 threonine dehydratase
Probab=77.83 E-value=92 Score=34.30 Aligned_cols=141 Identities=13% Similarity=0.193 Sum_probs=90.3
Q ss_pred CCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec-CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH------
Q 013389 245 RSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA-GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA------ 317 (444)
Q Consensus 245 ~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a------ 317 (444)
.....+.|.-+||||-|.+++.+|... ||.+-.-.-. .+.+.- ++..... .++..+.|.+.|++.
T Consensus 415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v-~v~ie~~-----~~~~~~~i~~~l~~~g~~~~~ 486 (591)
T PLN02550 415 QQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALV-LYSVGVH-----TEQELQALKKRMESAQLRTVN 486 (591)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEE-EEEEEeC-----CHHHHHHHHHHHHHCCCCeEe
Confidence 344678899999999999999999986 7665443322 233332 2222222 245788888888763
Q ss_pred hc--------------cCC--CCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCCh
Q 013389 318 VG--------------RRA--SEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADP 381 (444)
Q Consensus 318 l~--------------rr~--~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~ 381 (444)
|. +|. .+-..+.+.=+.|||-|.++.++|..+ -||+..+=...++....+|.=- .+.+
T Consensus 487 l~~~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~-~nITeF~YR~~~~~~a~vlvGi-----~v~~ 560 (591)
T PLN02550 487 LTSNDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSPR-WNISLFHYRGQGETGANVLVGI-----QVPP 560 (591)
T ss_pred CCCChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCCC-CceeeEEeecCCCCCccEEEEE-----eeCH
Confidence 10 111 112457778899999999999988742 4666666656666666677532 2224
Q ss_pred HHHHHHHHHHhhcccccc
Q 013389 382 KIIEAVRQKIGLSNLKVK 399 (444)
Q Consensus 382 ~~~~~lr~~l~~~~~~~~ 399 (444)
+..+.+.+.|.+.-..+.
T Consensus 561 ~e~~~l~~~l~~~gy~~~ 578 (591)
T PLN02550 561 EEMQEFKSRANALGYEYQ 578 (591)
T ss_pred HHHHHHHHHHHHcCCCeE
Confidence 667888888877554444
No 243
>PRK14643 hypothetical protein; Provisional
Probab=77.52 E-value=27 Score=31.81 Aligned_cols=93 Identities=10% Similarity=0.050 Sum_probs=65.4
Q ss_pred cHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEe---CCCCCCCCHHHHHHHHHHHHHHhcc--CCCCceEEEEEec
Q 013389 259 KLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRH---IDGTPISSEPERQRVIQCLEAAVGR--RASEGVRLELCME 333 (444)
Q Consensus 259 GLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~---~~g~~l~~~~~~~~l~~~L~~al~r--r~~~~~~lev~~~ 333 (444)
.+-.-+..++..+|+.+.+....+.++.-.-..||.+ .+|. ++- +.++.+.+.|.+.|+. ..+..|.|||+++
T Consensus 10 ~l~~l~~p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~gg-vtl-dDC~~vSr~is~~LD~~d~i~~~Y~LEVSSP 87 (164)
T PRK14643 10 QINELVNKELEVLNLKVYEINNLKEFENDMIQILVEDILQANKP-LDF-DILIKANDLVSNKIDQFIKTSEKYLLEISSS 87 (164)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcCCC-cCH-HHHHHHHHHHHHHhCccCCCCCCeEEEecCC
Confidence 3445566779999999999999998764443456654 3332 443 3799999999998863 3556899999987
Q ss_pred CCCchHHHHHHHHHHCCceE
Q 013389 334 DRQGLLADVTRTFRENGLNV 353 (444)
Q Consensus 334 DRpGLL~~Itr~l~e~gl~I 353 (444)
.=---|...-.+-+-.|-.|
T Consensus 88 GleRpL~~~~df~r~~G~~V 107 (164)
T PRK14643 88 GIEKQIRSQEELVKALNQWV 107 (164)
T ss_pred CCCCCCCCHHHHHHhcCCeE
Confidence 54444776667767767655
No 244
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.94 E-value=24 Score=25.98 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=27.2
Q ss_pred EEEEEEc---CCcchHHHHHHHHHHCCCeEEEEEEEe
Q 013389 118 ALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWT 151 (444)
Q Consensus 118 ~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~i~T 151 (444)
.|.+.|. ++||.++++..+|+..|++|......+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 4666665 689999999999999999998654433
No 245
>PRK08198 threonine dehydratase; Provisional
Probab=76.54 E-value=20 Score=37.26 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=33.2
Q ss_pred CCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEE
Q 013389 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATIN 281 (444)
Q Consensus 244 ~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~ 281 (444)
......+.|.-+||||-|.++..++.++|.||.+-...
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 34556889999999999999999999999999987654
No 246
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=76.40 E-value=15 Score=27.01 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=27.0
Q ss_pred EEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEe
Q 013389 37 LVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISS 70 (444)
Q Consensus 37 ~V~v~~---~dr~Gll~~i~~vL~~~~l~I~~A~i~t 70 (444)
.|++.+ .+.+|+++++.+.|++.|++|.-....+
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 455555 4789999999999999999997665433
No 247
>PRK14633 hypothetical protein; Provisional
Probab=76.18 E-value=27 Score=31.29 Aligned_cols=90 Identities=20% Similarity=0.246 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc--CCCCceEEEEEecCCCc
Q 013389 260 LLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR--RASEGVRLELCMEDRQG 337 (444)
Q Consensus 260 LL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r--r~~~~~~lev~~~DRpG 337 (444)
+-..+..++..+|+.+.+-.+...+++.. ..+|...+| ++- +.++.+.+.|...|+. ..++.|.|||+++-=--
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~~~l-rV~ID~~~G--v~l-ddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGldR 81 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGKLTI-RIFIDHENG--VSV-DDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMNR 81 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEE-EEEEeCCCC--CCH-HHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCCC
Confidence 44556778999999999999987766644 445554455 332 3799999999998864 23568999999874444
Q ss_pred hHHHHHHHHHHCCceE
Q 013389 338 LLADVTRTFRENGLNV 353 (444)
Q Consensus 338 LL~~Itr~l~e~gl~I 353 (444)
-|...-++-+-.|=.|
T Consensus 82 pL~~~~~f~r~~G~~v 97 (150)
T PRK14633 82 QIFNIIQAQALVGFNV 97 (150)
T ss_pred CCCCHHHHHHhCCCeE
Confidence 4777777777777554
No 248
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=75.95 E-value=26 Score=25.63 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=26.3
Q ss_pred EEEEEEc---CCcchHHHHHHHHHHCCCeEEEEEE
Q 013389 118 ALELTGT---DRVGLLSEVFAVLADLQCSVVEAKV 149 (444)
Q Consensus 118 ~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~i 149 (444)
.|.+.|. +.||++++|..+|++.|++|.....
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 4666664 7899999999999999999986533
No 249
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=75.75 E-value=11 Score=34.08 Aligned_cols=61 Identities=13% Similarity=0.262 Sum_probs=40.4
Q ss_pred EEEEEe--cCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHH
Q 013389 327 RLELCM--EDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQ 389 (444)
Q Consensus 327 ~lev~~--~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~ 389 (444)
++|+.. .+.||+|+.|+..++++|++|..+-..-..-......||-. .+|+....+.+|++
T Consensus 95 Viei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVt--e~~iP~~li~el~~ 157 (167)
T COG2150 95 VIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVT--ERPIPGDLIDELKK 157 (167)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEE--eccCCHHHHHHHhc
Confidence 455555 56799999999999999999999876533122223333321 34666666666654
No 250
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=75.43 E-value=26 Score=31.34 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC--CCCceEEEEEecCCCc
Q 013389 260 LLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR--ASEGVRLELCMEDRQG 337 (444)
Q Consensus 260 LL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~DRpG 337 (444)
+-.-+..++..+|+.+.+..+...++.-.-..+|....| ++ =+.++.+.+.+..+|+.. .+..|.|||+++-=--
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~g--v~-iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~R 85 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGG--ID-LDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLDR 85 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCC--CC-HHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCCC
Confidence 445567789999999999999987653333445544444 33 347999999999988643 3457999999874333
Q ss_pred hHHHHHHHHHHCCceE
Q 013389 338 LLADVTRTFRENGLNV 353 (444)
Q Consensus 338 LL~~Itr~l~e~gl~I 353 (444)
-|...-++-+-.|-.|
T Consensus 86 pL~~~~~f~r~~G~~v 101 (154)
T PRK00092 86 PLKKARDFRRFIGREV 101 (154)
T ss_pred cCCCHHHHHHhCCCeE
Confidence 3555555555555444
No 251
>PRK09084 aspartate kinase III; Validated
Probab=75.32 E-value=32 Score=36.37 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=63.1
Q ss_pred CCCeEEEEEEcc---CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc
Q 013389 244 DRSYSVVNVQCK---DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR 320 (444)
Q Consensus 244 ~~~~tvv~V~~~---DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r 320 (444)
.++...|+|.+. +.||.++++..+|.++|++|..-. +. ...-.|.|...+-. .. ....+.+.+.+.+..
T Consensus 303 ~~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--ss--e~sIs~~i~~~~~~---~~-~~~~~~~~l~~el~~ 374 (448)
T PRK09084 303 RRNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TS--EVSVSLTLDTTGST---ST-GDTLLTQALLTELSQ 374 (448)
T ss_pred eCCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--cc--CcEEEEEEechhhh---hh-hhHHHHHHHHHHHhc
Confidence 346778888765 689999999999999999998754 22 23345777543211 00 111222233222321
Q ss_pred --C---CCCceEEEEEec---CCCchHHHHHHHHHHCCc
Q 013389 321 --R---ASEGVRLELCME---DRQGLLADVTRTFRENGL 351 (444)
Q Consensus 321 --r---~~~~~~lev~~~---DRpGLL~~Itr~l~e~gl 351 (444)
+ ...-..|.|.+. ++||+++++..+|.+.++
T Consensus 375 ~~~i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI 413 (448)
T PRK09084 375 LCRVEVEEGLALVALIGNNLSKACGVAKRVFGVLEPFNI 413 (448)
T ss_pred CCeEEEECCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence 1 122456778776 789999999999987543
No 252
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=75.24 E-value=38 Score=38.70 Aligned_cols=103 Identities=15% Similarity=0.092 Sum_probs=66.4
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCC
Q 013389 33 PTATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGR 109 (444)
Q Consensus 33 ~~~t~V~v~~~---dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~ 109 (444)
.+.+.|++.+. +.+|.++++.++|+++|++|.--..++.+.-. .|.+... ..+.+.+.|.......
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s~~si--s~~i~~~---------~~~~~~~~l~~~~~~~ 383 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPDRQLL--QLAYTSE---------VADSALKLLDDAALPG 383 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCCCcEE--EEEEeHH---------HHHHHHHHHHhhcCCC
Confidence 45667788765 77889999999999999998766544443311 2444421 1112222232211001
Q ss_pred C-CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEE
Q 013389 110 S-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVE 146 (444)
Q Consensus 110 ~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~ 146 (444)
+ ....+...|.|.|. .+||+.+++..+|++.++++..
T Consensus 384 ~i~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~ 424 (810)
T PRK09466 384 ELKLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIW 424 (810)
T ss_pred cEEEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEE
Confidence 1 22345678888885 5899999999999999999964
No 253
>PRK08526 threonine dehydratase; Provisional
Probab=75.17 E-value=46 Score=34.73 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=50.2
Q ss_pred HHHHHHhhhccCCCCCCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC-----CeEEEEEEEEcCCCCCC
Q 013389 96 SYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-----GRIASLIYVKDCNSGSP 170 (444)
Q Consensus 96 ~~i~~aL~~~~~~~~~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~-----~~~~dvf~V~d~~~g~~ 170 (444)
+-++..|-.. .....+.+.-+||||-|++++..++..+.||....-.... +.+.-.+-+.-
T Consensus 314 ~i~~~~l~~~--------~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~------ 379 (403)
T PRK08526 314 IIIEKGLIKS--------YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLET------ 379 (403)
T ss_pred HHHHHHHHhc--------CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEe------
Confidence 3455555444 3368899999999999999999999999999987654321 22221222222
Q ss_pred CCChHHHHHHHHHHHH
Q 013389 171 IEDSQQIDRIEARLRN 186 (444)
Q Consensus 171 i~~~~r~~~i~~~L~~ 186 (444)
.+++..+.|.+.|.+
T Consensus 380 -~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 380 -KGKEHQEEIRKILTE 394 (403)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 145666677776654
No 254
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=75.11 E-value=17 Score=31.92 Aligned_cols=85 Identities=18% Similarity=0.215 Sum_probs=49.2
Q ss_pred HHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc--CCCCceEEEEEecCCCchHHH
Q 013389 264 VVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR--RASEGVRLELCMEDRQGLLAD 341 (444)
Q Consensus 264 i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r--r~~~~~~lev~~~DRpGLL~~ 341 (444)
+..++..+|+.+.+..+...++...-..+|.. ++. ++- +.++++.+.+.+.|+. -.+..+.|||+++-----|..
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~-~~g-v~l-ddc~~~sr~i~~~LD~~d~i~~~y~LEVSSPG~~r~L~~ 78 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDK-DGG-VSL-DDCEKVSRAISALLDAEDPIPEDYTLEVSSPGIDRPLKS 78 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE--SS----H-HHHHHHHHHHGGGTTTS----S-EEEEEE--SSSS--SS
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEe-CCC-CCH-HHHHHHHHHHHHHHccccccCcceEEEEeCCCCCCcCCC
Confidence 35678999999999999998876444455554 443 443 4789998998888865 245689999998743333544
Q ss_pred HHHHHHHCCc
Q 013389 342 VTRTFRENGL 351 (444)
Q Consensus 342 Itr~l~e~gl 351 (444)
.-++-+-.|-
T Consensus 79 ~~~~~~~iG~ 88 (141)
T PF02576_consen 79 PRDFERFIGR 88 (141)
T ss_dssp HHHHHHH-SE
T ss_pred HHHHHHhcCC
Confidence 4444444453
No 255
>PRK14638 hypothetical protein; Provisional
Probab=74.43 E-value=29 Score=31.03 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC--CCCceEEEEEecCCCc
Q 013389 260 LLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR--ASEGVRLELCMEDRQG 337 (444)
Q Consensus 260 LL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~DRpG 337 (444)
+-.-+..++..+|+.+.+-.....++.-.-..+|...+|. ++- +.++.+.+.|.+.|+.. .+..|.|||+++.=--
T Consensus 10 i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~-v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR 87 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGY-VSV-RDCELFSREIERFLDREDLIEHSYTLEVSSPGLDR 87 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCC-cCH-HHHHHHHHHHHHHhccccccCCceEEEEeCCCCCC
Confidence 4445667799999999999998876543334556544453 433 37999999999988643 3467999999873333
Q ss_pred hHHHHHHHHHHCCceEEEEEeecCC
Q 013389 338 LLADVTRTFRENGLNVTRAEVSTER 362 (444)
Q Consensus 338 LL~~Itr~l~e~gl~I~~A~i~T~g 362 (444)
-|...-.+-+-.|=.| +|.+.+
T Consensus 88 pL~~~~~f~r~~G~~v---~V~~~~ 109 (150)
T PRK14638 88 PLRGPKDYVRFTGKLA---KIVTKD 109 (150)
T ss_pred CCCCHHHHHHhCCCEE---EEEECC
Confidence 3666667777766544 455443
No 256
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.19 E-value=25 Score=31.67 Aligned_cols=89 Identities=16% Similarity=0.175 Sum_probs=61.7
Q ss_pred cHHHHHHHHHHhCCeeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC--CCCceEEEEEec--
Q 013389 259 KLLFDVVCTLTDMEYVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR--ASEGVRLELCME-- 333 (444)
Q Consensus 259 GLL~~i~~~L~~~~~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~-- 333 (444)
.+..-+-.++.++|+.+.+..+...| ++.+.+| +... |. ++= +.++++.+.+.+.|+.. .+..|.|||+++
T Consensus 9 ~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~-id~~-g~-v~l-ddC~~vSr~is~~LD~edpi~~~Y~LEVSSPGl 84 (153)
T COG0779 9 KVTELIEPVVESLGFELVDVEFVKEGRDSVLRIY-IDKE-GG-VTL-DDCADVSRAISALLDVEDPIEGAYFLEVSSPGL 84 (153)
T ss_pred HHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEE-eCCC-CC-CCH-HHHHHHHHHHHHHhccCCcccccEEEEeeCCCC
Confidence 45555677899999999999999987 4666544 5444 32 332 36999999999988743 345799999976
Q ss_pred CCCchHHHHHHHHHHCCceE
Q 013389 334 DRQGLLADVTRTFRENGLNV 353 (444)
Q Consensus 334 DRpGLL~~Itr~l~e~gl~I 353 (444)
||| |.....+-+-.|-.|
T Consensus 85 dRp--L~~~~~f~r~~G~~V 102 (153)
T COG0779 85 DRP--LKTAEHFARFIGEKV 102 (153)
T ss_pred CCC--cCCHHHHHHhcCcEE
Confidence 676 444455555555443
No 257
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=73.73 E-value=53 Score=37.81 Aligned_cols=135 Identities=12% Similarity=0.121 Sum_probs=80.3
Q ss_pred CCCeEEEEEEc---cCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc
Q 013389 244 DRSYSVVNVQC---KDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR 320 (444)
Q Consensus 244 ~~~~tvv~V~~---~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r 320 (444)
.++.+.|+|.+ .+.||.++++...|.+++++|..- .+.. ..-+|.+.+.+. ..++..++.+.+.|.. +..
T Consensus 319 ~~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~sse--~sis~~i~~~~~--~~~~~~~~~l~~~l~~-~~~ 391 (861)
T PRK08961 319 KNGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSSE--TNVTVSLDPSEN--LVNTDVLAALSADLSQ-ICR 391 (861)
T ss_pred ECCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcCC--CEEEEEEccccc--cchHHHHHHHHHHHhh-cCc
Confidence 34677888864 468999999999999999999764 3322 222355543321 1012234444444432 110
Q ss_pred --CCCCceEEEEEec---CCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389 321 --RASEGVRLELCME---DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393 (444)
Q Consensus 321 --r~~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~ 393 (444)
-...-..|.|.+. .+||+++++..+|.+.|+++ -..|....+.-+|.+.... .+.+..|.++|..
T Consensus 392 i~~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~-----i~~gsSe~~Is~vV~~~d~---~~av~~LH~~f~~ 461 (861)
T PRK08961 392 VKIIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL-----ISQASNDLNLTFVIDESDA---DGLLPRLHAELIE 461 (861)
T ss_pred EEEeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE-----EECCCccccEEEEEeHHHH---HHHHHHHHHHHhc
Confidence 0122456778775 78999999999999987654 2344445555444433211 2456777777654
No 258
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=73.14 E-value=18 Score=26.91 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.5
Q ss_pred EcCCcchHHHHHHHHHHCCCeEEEEEE
Q 013389 123 GTDRVGLLSEVFAVLADLQCSVVEAKV 149 (444)
Q Consensus 123 ~~DrpGLl~~i~~vL~~~~~~I~~A~i 149 (444)
.+|.||.+++++.+|++.|++|.....
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 468999999999999999999985543
No 259
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=72.21 E-value=22 Score=31.16 Aligned_cols=65 Identities=23% Similarity=0.311 Sum_probs=47.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeec-CCceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVST-ERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T-~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~ 393 (444)
-+.+.+.-.||.|.|+++-.++++.++||.-..=+- ..++|.-+..+ |.++.. ..++.+-++|+.
T Consensus 72 i~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi-~~ssm~---~~V~~ii~kl~k 137 (150)
T COG4492 72 IITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSI-DTSSME---KDVDKIIEKLRK 137 (150)
T ss_pred EEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEE-Echhhh---hhHHHHHHHHhc
Confidence 367889999999999999999999999998776543 34666666655 343332 345666666655
No 260
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=71.64 E-value=35 Score=25.30 Aligned_cols=28 Identities=11% Similarity=0.370 Sum_probs=24.7
Q ss_pred EEEEEEc---CCcchHHHHHHHHHHCCCeEE
Q 013389 118 ALELTGT---DRVGLLSEVFAVLADLQCSVV 145 (444)
Q Consensus 118 ~i~v~~~---DrpGLl~~i~~vL~~~~~~I~ 145 (444)
.|.+.|. +.||+++++..+|++.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4667775 789999999999999999996
No 261
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=71.62 E-value=49 Score=38.13 Aligned_cols=104 Identities=15% Similarity=0.208 Sum_probs=64.1
Q ss_pred CCeEEEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCC
Q 013389 33 PTATLVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGR 109 (444)
Q Consensus 33 ~~~t~V~v~~---~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~ 109 (444)
.+.+.|++.+ .+.+|.++++.+.|+++|++|.-.. ++... -.|.+.+.+. ....+.++.+.+.|......
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~-sse~s---is~~i~~~~~--~~~~~~~~~l~~~l~~~~~i- 392 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLIS-SSETN---VTVSLDPSEN--LVNTDVLAALSADLSQICRV- 392 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEEE-cCCCE---EEEEEccccc--cchHHHHHHHHHHHhhcCcE-
Confidence 4566777754 3689999999999999999996542 22221 1244443221 10122344444444321100
Q ss_pred CCCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeE
Q 013389 110 SNSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSV 144 (444)
Q Consensus 110 ~~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I 144 (444)
....+...|.|.|. .+||+.+++..+|+..++++
T Consensus 393 -~~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 393 -KIIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred -EEeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 12245678889986 78999999999999977655
No 262
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=71.47 E-value=10 Score=41.01 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=45.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCchHHHHHHHH
Q 013389 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQ 100 (444)
Q Consensus 35 ~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~ 100 (444)
...+.+...|+||.+..+..+|.+.++||-..+++. .+|.++-++.+... + ++++++.|++
T Consensus 452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~----v-~~~~l~~i~~ 514 (526)
T PRK13581 452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDP----V-PEEVLEELRA 514 (526)
T ss_pred ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCC----C-CHHHHHHHhc
Confidence 334445569999999999999999999999999875 66777755554332 2 3557777774
No 263
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=71.15 E-value=23 Score=28.23 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=47.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC--CceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE--RDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~ 393 (444)
.+.+++.+.++|+.|..|-|+-+-.|..+-...-++. ++.+.=-|-| |. ..+ ++-|..+|.+
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV-~s-~R~-----~~lL~~QLeK 66 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV-DS-DRS-----VDLLTSQLEK 66 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE-cC-CCC-----hHHHHHHHHH
Confidence 3679999999999999999999999999999988876 5566555555 32 233 4555555555
No 264
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=70.95 E-value=38 Score=26.09 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=39.5
Q ss_pred eEEEEEE---cCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 117 TALELTG---TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 117 t~i~v~~---~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
+.|.+.| .+.||+++++..+|+.+|++|..-. +.+ .--.|.|... ....+...+..|.+.|++
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~s~--~~is~~v~~~---~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--TSE--VSVSLTLDPT---KNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--cCC--cEEEEEEEch---hhccchHHHHHHHHHHHh
Confidence 3456643 5789999999999999999996542 322 2223444432 222223466677777776
No 265
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=70.85 E-value=30 Score=25.27 Aligned_cols=51 Identities=18% Similarity=0.403 Sum_probs=35.0
Q ss_pred cCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHH
Q 013389 333 EDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKI 391 (444)
Q Consensus 333 ~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l 391 (444)
.+++|+.++|.++|.++|+++.... | ++ ..=.|++.... . ++.++.|.++|
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~~~---~-~~~~~~l~~~l 61 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDDSL---L-PKKLKRLLAEL 61 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEehhh---h-hHHHHHHHHhh
Confidence 3789999999999999999999883 3 23 44556665322 1 24556666554
No 266
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.56 E-value=25 Score=25.81 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=27.0
Q ss_pred EEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEe
Q 013389 37 LVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISS 70 (444)
Q Consensus 37 ~V~v~~~---dr~Gll~~i~~vL~~~~l~I~~A~i~t 70 (444)
+|.+.+. +++|.++++.+.|.+.|++|.-....+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 4555554 679999999999999999997665544
No 267
>PRK14632 hypothetical protein; Provisional
Probab=69.67 E-value=39 Score=31.02 Aligned_cols=90 Identities=10% Similarity=0.088 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc--CCCCceEEEEEecCCCc
Q 013389 260 LLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR--RASEGVRLELCMEDRQG 337 (444)
Q Consensus 260 LL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r--r~~~~~~lev~~~DRpG 337 (444)
+-.-+.-++..+|+.+.+..+...+.+.+ ..||....| ++- +.++.+.+.|.++|+. ..++.|.|||+++-=--
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~~~~~~l-rV~ID~~~G--V~l-dDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR 85 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSYGGRTVV-RLFVDGPEG--VTI-DQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLER 85 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEE-EEEEECCCC--CCH-HHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC
Confidence 44456677899999999999875334444 455544444 332 3799999999998863 23568999999763333
Q ss_pred hHHHHHHHHHHCCceE
Q 013389 338 LLADVTRTFRENGLNV 353 (444)
Q Consensus 338 LL~~Itr~l~e~gl~I 353 (444)
-|...-.+-+-.|=.|
T Consensus 86 pL~~~~~f~r~iG~~V 101 (172)
T PRK14632 86 PFFRAEQMSPYVGRQI 101 (172)
T ss_pred cCCCHHHHHHhCCCEE
Confidence 3666666666666444
No 268
>PLN02550 threonine dehydratase
Probab=68.54 E-value=1.9e+02 Score=31.87 Aligned_cols=108 Identities=8% Similarity=0.106 Sum_probs=67.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC----
Q 013389 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG---- 108 (444)
Q Consensus 34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~---- 108 (444)
....+.|.-+||||-|.+++.+|... ||.+..-.- .-+.+. ++....-.+ ++-++.|.+.|......
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~-v~v~ie~~~-----~~~~~~i~~~l~~~g~~~~~l 487 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEAL-VLYSVGVHT-----EQELQALKKRMESAQLRTVNL 487 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceE-EEEEEEeCC-----HHHHHHHHHHHHHCCCCeEeC
Confidence 34678899999999999999999986 888765532 222222 333332222 44556666677655311
Q ss_pred ----------C--C--CC-CCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEE
Q 013389 109 ----------R--S--NS-FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW 150 (444)
Q Consensus 109 ----------~--~--~~-~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~ 150 (444)
| . .. ...--.+.+.=+.|||-|.+.+.+|.. +.||..-+=.
T Consensus 488 ~~~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~-~~nITeF~YR 543 (591)
T PLN02550 488 TSNDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSP-RWNISLFHYR 543 (591)
T ss_pred CCChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCC-CCceeeEEee
Confidence 1 0 11 122345778889999999999998774 3566544433
No 269
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=67.93 E-value=85 Score=32.78 Aligned_cols=79 Identities=13% Similarity=0.044 Sum_probs=48.5
Q ss_pred HHHHHHHHhhhccCCCCCCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEE-eeCCeEEEEEEEEcCCCCCCCC
Q 013389 94 VISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW-THNGRIASLIYVKDCNSGSPIE 172 (444)
Q Consensus 94 ~~~~i~~aL~~~~~~~~~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~-T~~~~~~dvf~V~d~~~g~~i~ 172 (444)
+.+.+++.|-.. .....+.+.-+||||-|.+++..+...+.||...+-. ..+.....+.....- .
T Consensus 311 ~~~~~~~~l~~~--------~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~------~ 376 (409)
T TIGR02079 311 TEEIRERSLLYE--------GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIEL------N 376 (409)
T ss_pred HHHHHHHHHHhc--------CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEe------C
Confidence 334455555443 3367899999999999999999777788899955543 222222222222221 1
Q ss_pred ChHHHHHHHHHHHH
Q 013389 173 DSQQIDRIEARLRN 186 (444)
Q Consensus 173 ~~~r~~~i~~~L~~ 186 (444)
+++..+.|.+.|++
T Consensus 377 ~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 377 DKEDFAGLLERMAA 390 (409)
T ss_pred CHHHHHHHHHHHHH
Confidence 34555667776665
No 270
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=67.65 E-value=48 Score=24.56 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=25.1
Q ss_pred EEEEEEcc---CCccHHHHHHHHHHhCCeeEE
Q 013389 248 SVVNVQCK---DRTKLLFDVVCTLTDMEYVVF 276 (444)
Q Consensus 248 tvv~V~~~---DRpGLL~~i~~~L~~~~~nI~ 276 (444)
..|.|.|. +.||+++++..+|.+.|++|.
T Consensus 2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 35677765 889999999999999999996
No 271
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=67.43 E-value=32 Score=35.78 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=39.8
Q ss_pred CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-eCCeEEEEEEEEc
Q 013389 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKD 164 (444)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~~~~~dvf~V~d 164 (444)
..|.+.+..+|+||.|+++-.+|+.+|+|...-+..- .++-..=.|||.-
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~ 346 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV 346 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE
Confidence 3567777788999999999999999999999877774 3344455788866
No 272
>PRK08526 threonine dehydratase; Provisional
Probab=67.25 E-value=49 Score=34.49 Aligned_cols=86 Identities=13% Similarity=0.191 Sum_probs=57.0
Q ss_pred HHHHHHHHHhccCCCCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCce----EEEEEEEEcCCCCCCChHHH
Q 013389 309 RVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDE----ALNIFYVTDEMGNPADPKII 384 (444)
Q Consensus 309 ~l~~~L~~al~rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~----a~d~FyV~d~~g~~v~~~~~ 384 (444)
.+.+.+...|- +..+...+.+.-+||||-|.++++.+.+.+.||....-...... ...++..-... +.+++
T Consensus 311 ~~~~i~~~~l~-~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~----~~~~~ 385 (403)
T PRK08526 311 MLNIIIEKGLI-KSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETK----GKEHQ 385 (403)
T ss_pred HHHHHHHHHHH-hcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeC----CHHHH
Confidence 45455555542 23346789999999999999999999999999998766433221 22222222221 34788
Q ss_pred HHHHHHHhhcccccc
Q 013389 385 EAVRQKIGLSNLKVK 399 (444)
Q Consensus 385 ~~lr~~l~~~~~~~~ 399 (444)
++|.+.|.+.-..++
T Consensus 386 ~~~~~~l~~~g~~~~ 400 (403)
T PRK08526 386 EEIRKILTEKGFNFY 400 (403)
T ss_pred HHHHHHHHHCCCCeE
Confidence 888888877655544
No 273
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=67.22 E-value=10 Score=40.93 Aligned_cols=59 Identities=10% Similarity=0.183 Sum_probs=43.9
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCchHHHHHHHH
Q 013389 37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQ 100 (444)
Q Consensus 37 ~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~ 100 (444)
.+-+...|+||.+..+..+|.++++||...++.. .+|.++-++.+..+ + +++++++|++
T Consensus 453 ~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~----v-~~~~l~~i~~ 513 (525)
T TIGR01327 453 MLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQP----V-PDEVLEEIKA 513 (525)
T ss_pred EEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCC----C-CHHHHHHHhc
Confidence 3445568999999999999999999999988864 67777755554432 2 3557777774
No 274
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.51 E-value=21 Score=25.15 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=29.5
Q ss_pred EcCCcchHHHHHHHHHHCCCeEEEEEEEe-eCCeEEEEEEEEc
Q 013389 123 GTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKD 164 (444)
Q Consensus 123 ~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~~~~~dvf~V~d 164 (444)
.+|.||.++++...|+++|++|....... .++...-.|.+.+
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~ 50 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK 50 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH
Confidence 47889999999999999999998654432 2233333455544
No 275
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.41 E-value=36 Score=24.77 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=26.8
Q ss_pred EEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEe
Q 013389 37 LVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISS 70 (444)
Q Consensus 37 ~V~v~~~---dr~Gll~~i~~vL~~~~l~I~~A~i~t 70 (444)
+|++.+. +.+|+++++.+.|++.|.+|.-.....
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4555554 778999999999999999997665543
No 276
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=64.76 E-value=56 Score=25.09 Aligned_cols=63 Identities=11% Similarity=0.112 Sum_probs=37.8
Q ss_pred EEEEEE---ccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389 248 SVVNVQ---CKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEA 316 (444)
Q Consensus 248 tvv~V~---~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~ 316 (444)
+.|++. ..+.||+++++..+|.+.|+++..- .+.+ ..-.|.|...+ ...+......|.+.|++
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i--~~s~--~~is~~v~~~~--~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLI--STSE--VSVSLTLDPTK--NLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEE--EcCC--cEEEEEEEchh--hccchHHHHHHHHHHHh
Confidence 345553 3678999999999999999999654 2322 22336665422 11112245555555544
No 277
>PRK14631 hypothetical protein; Provisional
Probab=64.40 E-value=1.2e+02 Score=27.93 Aligned_cols=93 Identities=16% Similarity=0.123 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHhCCeeEEEEEEEecCC-EEEEEEEEEeC----------------CCCCCCCHHHHHHHHHHHHHHhcc-
Q 013389 259 KLLFDVVCTLTDMEYVVFHATINTAGE-RAYLEFYIRHI----------------DGTPISSEPERQRVIQCLEAAVGR- 320 (444)
Q Consensus 259 GLL~~i~~~L~~~~~nI~~A~I~T~g~-~a~d~F~V~~~----------------~g~~l~~~~~~~~l~~~L~~al~r- 320 (444)
.+..-+.-++..+|+.+.+..+...++ +.+. .||..+ .+..++- +.++.+.+.|.+.|+.
T Consensus 9 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~Lr-V~ID~~~~~~~~~~~~~~~~~~~~~gvti-ddC~~vSr~is~~LD~~ 86 (174)
T PRK14631 9 ALTDIIAPAVAACGVDLWGIEFLPQGKRSLLR-IYIDRLVEENAEPVINEDGEVEQGRGIGV-EDCVRVTQQVGAMLDVH 86 (174)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCceEEE-EEEecCcccccccccccccccccCCCcCH-HHHHHHHHHHHHHhccc
Confidence 455567778999999999999998765 4454 445432 1223443 3799999999998863
Q ss_pred -CCCCceEEEEEecCCCchHHHHHHHHHHCCceE
Q 013389 321 -RASEGVRLELCMEDRQGLLADVTRTFRENGLNV 353 (444)
Q Consensus 321 -r~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I 353 (444)
..+..|.|||+++-=-.-|.....+-+-.|-.|
T Consensus 87 d~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~V 120 (174)
T PRK14631 87 DPISGEYALEVSSPGWDRPFFQLEQLQGYIGQQV 120 (174)
T ss_pred ccCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCeE
Confidence 345689999998744444777888888777554
No 278
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=64.01 E-value=49 Score=24.04 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=26.7
Q ss_pred CCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEc
Q 013389 125 DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164 (444)
Q Consensus 125 DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d 164 (444)
++||..+++..+|+++|++|.-- .| +. .--.|++..
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i--~t-~~-~~is~~v~~ 47 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLI--PT-SE-NSVTLYLDD 47 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEE--ec-CC-CEEEEEEeh
Confidence 67899999999999999999965 22 22 223466655
No 279
>PRK08841 aspartate kinase; Validated
Probab=63.57 E-value=73 Score=33.14 Aligned_cols=122 Identities=16% Similarity=0.189 Sum_probs=71.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCCCCC
Q 013389 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSF 113 (444)
Q Consensus 34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~~~~ 113 (444)
+.+.|++.+ +.++++.+.|+++|+++.--.. +... + .|.|.. ...+.+++.+.... ...
T Consensus 257 ~~~~i~v~~----~~~~~i~~~l~~~~i~v~~i~~-~~~~-~--~~~v~~---------~~~~~~~~~~~~~i----~~~ 315 (392)
T PRK08841 257 DLALIEVES----ESLPSLTKQCQMLGIEVWNVIE-EADR-A--QIVIKQ---------DACAKLKLVFDDKI----RNS 315 (392)
T ss_pred CeEEEEecc----chHHHHHHHHHHcCCCEEEEEe-cCCc-E--EEEECH---------HHHHHHHHhCcccE----EEe
Confidence 344555533 3578999999999988774421 1221 1 244432 12233333322111 122
Q ss_pred CCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcC
Q 013389 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG 190 (444)
Q Consensus 114 ~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~ 190 (444)
.+...|.+.|...||+.+++..+|++.++||.... + .+ ..+.+|.+. +..++.-+.|.+.+..
T Consensus 316 ~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~--~-s~--~~is~vv~~---------~~~~~av~~lH~~f~~ 378 (392)
T PRK08841 316 ESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCS--T-EP--QSSMLVLDP---------ANVDRAANILHKTYVT 378 (392)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEE--C-CC--cEEEEEEeH---------HHHHHHHHHHHHHHcC
Confidence 45678999999999999999999999999996433 2 22 334334332 2234455566766654
No 280
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=62.21 E-value=14 Score=25.73 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=25.4
Q ss_pred EEEEEEcC---CcchHHHHHHHHHHCCCeEEEEE
Q 013389 118 ALELTGTD---RVGLLSEVFAVLADLQCSVVEAK 148 (444)
Q Consensus 118 ~i~v~~~D---rpGLl~~i~~vL~~~~~~I~~A~ 148 (444)
.|+|.+.+ .||.++++..+|++++++|....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~ 35 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMIS 35 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEE
Confidence 35566655 89999999999999999998553
No 281
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=61.95 E-value=25 Score=26.12 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=24.1
Q ss_pred ecCCCchHHHHHHHHHHCCceEEEEEee
Q 013389 332 MEDRQGLLADVTRTFRENGLNVTRAEVS 359 (444)
Q Consensus 332 ~~DRpGLL~~Itr~l~e~gl~I~~A~i~ 359 (444)
..|+||.++++.+.|.+.|++|.....+
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeC
Confidence 3689999999999999999999866443
No 282
>PRK14635 hypothetical protein; Provisional
Probab=61.36 E-value=74 Score=28.82 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=63.2
Q ss_pred CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeC---CCCCCCCHHHHHHHHHHHHHHhccCC-CCceEEEEE
Q 013389 256 DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHI---DGTPISSEPERQRVIQCLEAAVGRRA-SEGVRLELC 331 (444)
Q Consensus 256 DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~---~g~~l~~~~~~~~l~~~L~~al~rr~-~~~~~lev~ 331 (444)
+..-+-.-+..++ ..|+.+.+..+...++.-.-..+|... +|. ++- +.++.+.+.+.+.|+... ...|.|||+
T Consensus 4 ~~~~i~~l~~~~~-~~g~el~dve~~~~~~~~~lrV~ID~~~~~~~g-v~l-ddC~~vSr~is~~LD~~d~~~~Y~LEVS 80 (162)
T PRK14635 4 SEEEISEILDRVL-ALPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGS-VSL-LECEQVSRKLKEELERISPDLDFTLKVS 80 (162)
T ss_pred cHHHHHHHHHHHH-CCCCEEEEEEEEecCCCcEEEEEEecCCCCCCC-cCH-HHHHHHHHHHHHHhCCCCCCCCeEEEEc
Confidence 3334444455566 469999999999887654444555432 232 333 379999999999887532 248999999
Q ss_pred ecCCCchHHHHHHHHHHCCceEE
Q 013389 332 MEDRQGLLADVTRTFRENGLNVT 354 (444)
Q Consensus 332 ~~DRpGLL~~Itr~l~e~gl~I~ 354 (444)
++-=---|..--..-+-.|-.+.
T Consensus 81 SPGldRpL~~~~~~~r~~G~~v~ 103 (162)
T PRK14635 81 SAGAERKLRLPEDLDRFRGIPVR 103 (162)
T ss_pred CCCCCCcCCCHHHHHHhCCCEEE
Confidence 87443446666777777777664
No 283
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=61.21 E-value=40 Score=23.91 Aligned_cols=32 Identities=22% Similarity=0.189 Sum_probs=25.7
Q ss_pred EEEEEeC---CCccHHHHHHHHHHhCCceEEEEEE
Q 013389 37 LVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYI 68 (444)
Q Consensus 37 ~V~v~~~---dr~Gll~~i~~vL~~~~l~I~~A~i 68 (444)
.|++.+. +++|++.++.+.|++.+.++.-...
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 3566544 7899999999999999999976554
No 284
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.02 E-value=31 Score=24.29 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=24.7
Q ss_pred ecCCCchHHHHHHHHHHCCceEEEEEee
Q 013389 332 MEDRQGLLADVTRTFRENGLNVTRAEVS 359 (444)
Q Consensus 332 ~~DRpGLL~~Itr~l~e~gl~I~~A~i~ 359 (444)
..|.+|++.++.+.|.++|++|......
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 4788999999999999999999877553
No 285
>PRK08639 threonine dehydratase; Validated
Probab=60.77 E-value=1.1e+02 Score=32.00 Aligned_cols=67 Identities=12% Similarity=0.147 Sum_probs=42.4
Q ss_pred CCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-eCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 114 ~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
.....+.+.-+||||-|.+++..+...+.||..-+-.- .+.....+..... ..+++..+.|.+.|.+
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE------~~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIE------LKDAEDYDGLIERMEA 401 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 34688999999999999999997777777999765431 2211222222222 1134556677777765
No 286
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.75 E-value=14 Score=28.88 Aligned_cols=31 Identities=32% Similarity=0.358 Sum_probs=25.7
Q ss_pred eEEEEE---EcCCcchHHHHHHHHHHCCCeEEEE
Q 013389 117 TALELT---GTDRVGLLSEVFAVLADLQCSVVEA 147 (444)
Q Consensus 117 t~i~v~---~~DrpGLl~~i~~vL~~~~~~I~~A 147 (444)
+.|+|. .+++||++++|..+|+.+|+||.--
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI 35 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLI 35 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEE
Confidence 345552 4688999999999999999999965
No 287
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.75 E-value=62 Score=23.46 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=26.3
Q ss_pred EEEEEEc---CCcchHHHHHHHHHHCCCeEEEEEE
Q 013389 118 ALELTGT---DRVGLLSEVFAVLADLQCSVVEAKV 149 (444)
Q Consensus 118 ~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~i 149 (444)
.|.+.|. +.||+++++...|++.|++|.-...
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q 37 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQ 37 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 4666665 7789999999999999999985544
No 288
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.48 E-value=64 Score=25.04 Aligned_cols=56 Identities=21% Similarity=0.269 Sum_probs=36.6
Q ss_pred cCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 124 ~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
++.||+++++..+|+++|+||.--. +.. .--.|-|... ...+ +++.++.|.++|++
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~--~s~--~~isftv~~~--~~~~-~~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVS--TSE--TNVTVSLDPD--PNGL-DPDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE--eCC--CEEEEEEeCc--cccc-chHHHHHHHHHHHh
Confidence 4789999999999999999999653 222 2223555442 1113 22466777777776
No 289
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=60.25 E-value=79 Score=38.71 Aligned_cols=167 Identities=17% Similarity=0.140 Sum_probs=105.6
Q ss_pred CCCEEEEEe--cCCCCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec---C--CEEEEEEEEEeCCCCCCCCHH
Q 013389 233 DYPVVTVQN--WADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA---G--ERAYLEFYIRHIDGTPISSEP 305 (444)
Q Consensus 233 ~~~~V~v~~--~~~~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~---g--~~a~d~F~V~~~~g~~l~~~~ 305 (444)
.+..+.+.. ...++...+.++.+.+|..|.++.-+|..+|+.|.+.+-+.. + ......|++..+.+..++..+
T Consensus 473 ~~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~ 552 (1528)
T PF05088_consen 473 GPLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDD 552 (1528)
T ss_pred CCceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHH
Confidence 345565543 334467899999999999999999999999999999876552 2 257777999888777666566
Q ss_pred HHHHHHHHHHHHhccCCCC-c---eEEE-EEecCCCchHHHHHHHHHHCCceEEEEEeec-CC------ceEEEEEEEE-
Q 013389 306 ERQRVIQCLEAAVGRRASE-G---VRLE-LCMEDRQGLLADVTRTFRENGLNVTRAEVST-ER------DEALNIFYVT- 372 (444)
Q Consensus 306 ~~~~l~~~L~~al~rr~~~-~---~~le-v~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T-~g------~~a~d~FyV~- 372 (444)
.++.+++++.+...++... + +++. =-+--..-||...++.|++.|+......|.. .- ..-.+.|+.+
T Consensus 553 ~~~~~~~a~~~v~~g~~e~D~~n~Lvl~agL~wrev~lLRA~~~Yl~Q~~~~~s~~~i~~~l~~~p~i~~~L~~lF~~rf 632 (1528)
T PF05088_consen 553 IRERFEEAFEAVWNGRAENDGFNRLVLSAGLTWREVALLRAYARYLRQIGFPFSQEYIEETLLAHPEIARLLVELFEARF 632 (1528)
T ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7778888887776554332 1 1111 1122345688889999999988665555531 11 1134445543
Q ss_pred cCCCCCCChHHHHHHHHHHhhcccccc
Q 013389 373 DEMGNPADPKIIEAVRQKIGLSNLKVK 399 (444)
Q Consensus 373 d~~g~~v~~~~~~~lr~~l~~~~~~~~ 399 (444)
|+......+...+.++++|.+.+-.|.
T Consensus 633 ~P~~~~~~~~~~~~~~~~i~~~l~~V~ 659 (1528)
T PF05088_consen 633 DPDSQEAREAAQEELEEEIEEALDEVA 659 (1528)
T ss_pred CCCccccchhHHHHHHHHHHHHHhhcC
Confidence 221222223455566666665544444
No 290
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=59.95 E-value=70 Score=25.55 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=47.9
Q ss_pred ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee-CCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (444)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~-~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~ 189 (444)
.+.+.+.+.++|+.|-++-++-...|..|....-.+. ++.-+.+=.+.+. ..++ +.|..+|+++..
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s--~R~~------~lL~~QLeKl~D 69 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS--DRSV------DLLTSQLEKLYD 69 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC--CCCh------HHHHHHHHHHcc
Confidence 4789999999999999999999999999997777663 3333344334442 2333 467888887665
No 291
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=58.33 E-value=1.5e+02 Score=32.00 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=42.2
Q ss_pred CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
....+.|.-+||||-|.+++.+|+. .||...+=.-.+...+-+|....- .+++..+.|.+.|++
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~------~~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQL------SNPQERQEILARLND 387 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 3578899999999999999999997 477755443223333344433331 134566777777765
No 292
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.31 E-value=55 Score=23.77 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=27.0
Q ss_pred EEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEe
Q 013389 37 LVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISS 70 (444)
Q Consensus 37 ~V~v~~~---dr~Gll~~i~~vL~~~~l~I~~A~i~t 70 (444)
.|++.+. +.+|+..++.+.|++.|.++.-.....
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4555554 779999999999999999997765543
No 293
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.13 E-value=46 Score=26.28 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=37.6
Q ss_pred ecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCC--hHHHHHHHHHHhh
Q 013389 332 MEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPAD--PKIIEAVRQKIGL 393 (444)
Q Consensus 332 ~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~--~~~~~~lr~~l~~ 393 (444)
..+.||++++|-+.|.++|++|..... ++ ..=.|-|...+..... ...+++|+++|..
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~q---s~-~sISftV~~sd~~~~~~~~~~l~~~~~~~~~ 70 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVAT---SE-VSISLTLDPSKLWSRELIQQELDHVVEELEK 70 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEe---cC-CEEEEEEEhhhhhhhhhHHHHHHHHHHHHHH
Confidence 358899999999999999999998843 23 3344555433221010 1355677777665
No 294
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.02 E-value=73 Score=23.11 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=26.6
Q ss_pred EEEEEEc---CCcchHHHHHHHHHHCCCeEEEEEE
Q 013389 118 ALELTGT---DRVGLLSEVFAVLADLQCSVVEAKV 149 (444)
Q Consensus 118 ~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~i 149 (444)
.|.+.|. +.||+++++...|++.|++|.....
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 37 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQ 37 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 4666765 6899999999999999999986544
No 295
>PRK00907 hypothetical protein; Provisional
Probab=56.70 E-value=45 Score=27.35 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=47.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEE----EecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhc
Q 013389 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYI----SSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETI 105 (444)
Q Consensus 35 ~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i----~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~ 105 (444)
..-++|.|.+++++...|..++..+.-......+ |+.|.+.--.+.|.- ++++.++.|-++|...
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a------ts~eQld~iY~~L~~~ 85 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA------ESREQYDAAHQALRDH 85 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE------CCHHHHHHHHHHHhhC
Confidence 3789999999999999999999998776666666 345555544444443 2355677788888654
No 296
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=55.89 E-value=56 Score=25.29 Aligned_cols=54 Identities=13% Similarity=0.125 Sum_probs=36.5
Q ss_pred cCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389 333 EDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393 (444)
Q Consensus 333 ~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~ 393 (444)
.-.||++++|.+.|.++|++|...-. ++ ..=.|-+.. . .+.++.+++|.++|.+
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~~--~-~~~~~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALHM--E-NAEDTNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeh--h-hcChHHHHHHHHHHHH
Confidence 35699999999999999999998843 23 222333322 2 2233467788888776
No 297
>PRK14641 hypothetical protein; Provisional
Probab=55.57 E-value=85 Score=28.86 Aligned_cols=81 Identities=11% Similarity=0.045 Sum_probs=55.6
Q ss_pred HhCCeeEEEEEEEecCC-EEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCC------CCceEEEEEecCCCchHHH
Q 013389 269 TDMEYVVFHATINTAGE-RAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRA------SEGVRLELCMEDRQGLLAD 341 (444)
Q Consensus 269 ~~~~~nI~~A~I~T~g~-~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~------~~~~~lev~~~DRpGLL~~ 341 (444)
..+|+.+.+-.+...++ +.+. .+|. .+|. ++- +.++.+.+.|.+.|+... ...|.|||+++-=---|..
T Consensus 20 ~~~G~eLvdve~~~~~~~~~lr-V~ID-~~~g-v~l-DdC~~vSr~Is~~LD~~d~i~~~~~~~Y~LEVSSPGldRpL~~ 95 (173)
T PRK14641 20 KGEGVYLVSMTVKGSGKGRKIE-VLLD-ADTG-IRI-DQCAFFSRRIRERLEEDEELLGLVGEDFDLMVSSPGLGEPIIL 95 (173)
T ss_pred ccCCeEEEEEEEEeCCCCcEEE-EEEe-CCCC-CCH-HHHHHHHHHHHHHhCcccccccCCCCCeEEEEeCCCCCCcCCC
Confidence 48999999999988765 4554 4454 3333 333 379999999999887432 2579999998744444666
Q ss_pred HHHHHHHCCceE
Q 013389 342 VTRTFRENGLNV 353 (444)
Q Consensus 342 Itr~l~e~gl~I 353 (444)
.-++-+-.|-.|
T Consensus 96 ~~~f~r~~G~~V 107 (173)
T PRK14641 96 PRQYGRHVGRLL 107 (173)
T ss_pred HHHHHHhCCCEE
Confidence 666666666544
No 298
>PRK14644 hypothetical protein; Provisional
Probab=55.00 E-value=1e+02 Score=27.05 Aligned_cols=78 Identities=6% Similarity=-0.046 Sum_probs=54.4
Q ss_pred HHHHHhCCeeEEEEEEEecCC-EEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc--CCCCceEEEEEec--CCCchH
Q 013389 265 VCTLTDMEYVVFHATINTAGE-RAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR--RASEGVRLELCME--DRQGLL 339 (444)
Q Consensus 265 ~~~L~~~~~nI~~A~I~T~g~-~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r--r~~~~~~lev~~~--DRpGLL 339 (444)
..++..+|+.+.+......++ +.+. .||. .. +=+.++.+.+.|.+.|+. ..+..+.|||+++ ||| |
T Consensus 5 e~~~~~~g~el~dve~~~~~~~~~Lr-V~Id-k~-----~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRp--L 75 (136)
T PRK14644 5 EKLLEKFGNKINEIKIVKEDGDLFLE-VILN-SR-----DLKDIEELTKEISDFIDNLSVEFDFDSLDISSPGFDMD--Y 75 (136)
T ss_pred hhhHHhcCCEEEEEEEEeCCCCEEEE-EEEC-CC-----CHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCC--C
Confidence 356889999999999998765 4454 4452 21 123789999999988863 3456899999966 888 3
Q ss_pred HHHHHHHHHCCce
Q 013389 340 ADVTRTFRENGLN 352 (444)
Q Consensus 340 ~~Itr~l~e~gl~ 352 (444)
.. .++-+-.|-.
T Consensus 76 ~~-~~f~r~~G~~ 87 (136)
T PRK14644 76 ET-DELENHIGEI 87 (136)
T ss_pred CH-HHHHHhCCCe
Confidence 33 3655555643
No 299
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=54.49 E-value=28 Score=24.15 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=25.9
Q ss_pred EEEEecC---CCchHHHHHHHHHHCCceEEEEEee
Q 013389 328 LELCMED---RQGLLADVTRTFRENGLNVTRAEVS 359 (444)
Q Consensus 328 lev~~~D---RpGLL~~Itr~l~e~gl~I~~A~i~ 359 (444)
+++.+.+ .+|.++++.++|.+++++|.....+
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 3 VSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 4555544 8999999999999999999777554
No 300
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=54.05 E-value=75 Score=22.39 Aligned_cols=31 Identities=16% Similarity=0.411 Sum_probs=25.6
Q ss_pred EEEEEEc---CCcchHHHHHHHHHHCCCeEEEEE
Q 013389 118 ALELTGT---DRVGLLSEVFAVLADLQCSVVEAK 148 (444)
Q Consensus 118 ~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~ 148 (444)
.|++.|. +++|+++++...|++.+++|....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~ 35 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMIS 35 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 4566555 889999999999999999997543
No 301
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=53.93 E-value=2.3e+02 Score=32.56 Aligned_cols=101 Identities=7% Similarity=0.032 Sum_probs=65.3
Q ss_pred CCeEEEEEEcc---CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH-hcc
Q 013389 245 RSYSVVNVQCK---DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA-VGR 320 (444)
Q Consensus 245 ~~~tvv~V~~~---DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a-l~r 320 (444)
++.+.|+|.+. +.||.++++..+|.++|++|..-...+. + ..-.|.+... ..+++.+.|++. ...
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s-~-~sis~~i~~~---------~~~~~~~~l~~~~~~~ 383 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPD-R-QLLQLAYTSE---------VADSALKLLDDAALPG 383 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCC-C-cEEEEEEeHH---------HHHHHHHHHHhhcCCC
Confidence 46778888876 8899999999999999999976543322 2 2223444311 233343444332 111
Q ss_pred C---CCCceEEEEEec---CCCchHHHHHHHHHHCCceEEEE
Q 013389 321 R---ASEGVRLELCME---DRQGLLADVTRTFRENGLNVTRA 356 (444)
Q Consensus 321 r---~~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A 356 (444)
+ ..+-..|.|.+. .++|+..++..+|.+.|+++...
T Consensus 384 ~i~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 384 ELKLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred cEEEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 1 112345777764 68999999999999999998543
No 302
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=53.63 E-value=82 Score=23.62 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=27.0
Q ss_pred EEEEEEeC--CCccHHHHHHHHHHhCCceEEEEEEEe
Q 013389 36 TLVKVDSA--RRHGILLEAVQVLTDLNLLIKKAYISS 70 (444)
Q Consensus 36 t~V~v~~~--dr~Gll~~i~~vL~~~~l~I~~A~i~t 70 (444)
..|.+.+. .++|+++++.++|.+.|.++.......
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~ 39 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSM 39 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecC
Confidence 35666654 368999999999999999997766544
No 303
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=52.86 E-value=5.4e+02 Score=31.89 Aligned_cols=167 Identities=15% Similarity=0.135 Sum_probs=109.2
Q ss_pred eEEEeecCCCCeEEEEEEeC-CCc--cHHHHHHHHHHh-CCceEEEEEE-EecCCeEEEEEEEEeCCCCCCC-c-hHHHH
Q 013389 24 RVVIDNAVCPTATLVKVDSA-RRH--GILLEAVQVLTD-LNLLIKKAYI-SSDGRFFMDVFHVTDLNGNKLT-D-ESVIS 96 (444)
Q Consensus 24 ~v~i~~~~~~~~t~V~v~~~-dr~--Gll~~i~~vL~~-~~l~I~~A~i-~t~~g~~~dvF~V~d~~g~~~~-~-~~~~~ 96 (444)
++.+..+......-+-|+-| |+. .+-.+|-++|.+ ++....+-+. ++.+..+-.-|.+..+.+.... + ..+.+
T Consensus 330 Rlf~R~D~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~~e~~lar~~~~~~~~~~~~~~~d~~~le~ 409 (1528)
T PF05088_consen 330 RLFLRRDPFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYFSESPLARVHFIIRVDPGHEPDIDVEALEA 409 (1528)
T ss_pred eEEEEEcCCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEecCCceEEEEEEEEeCCCCCCCCCHHHHHH
Confidence 77778777777765555554 433 456777777765 5666666665 3577777766777766665521 2 22222
Q ss_pred HHH-----------HHhhhcc--------------CC------------------------C----------C-CCCCCc
Q 013389 97 YIE-----------QSLETIH--------------YG------------------------R----------S-NSFNGL 116 (444)
Q Consensus 97 ~i~-----------~aL~~~~--------------~~------------------------~----------~-~~~~~~ 116 (444)
.|. ++|.... .+ . + ....+.
T Consensus 410 ~l~~~~r~W~d~l~~~l~~~~g~~~~~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~~~~~~ 489 (1528)
T PF05088_consen 410 RLAEATRSWEDRLREALVERYGEEQGARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAGAGPGR 489 (1528)
T ss_pred HHHHHHCCHHHHHHHHHHHhcChhhhHHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCCCCCCe
Confidence 222 2222110 00 0 1 233456
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee---CC--eEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhcCC
Q 013389 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH---NG--RIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD 191 (444)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~---~~--~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~~~ 191 (444)
+.+.++.+.+|..|+++.-+|..+|+.|...+-+.- ++ ..+-.|++..+ .+......+.++.+++.+.++..|.
T Consensus 490 ~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~-~~~~~~~~~~~~~~~~a~~~v~~g~ 568 (1528)
T PF05088_consen 490 LRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYP-DGDALDLDDIRERFEEAFEAVWNGR 568 (1528)
T ss_pred EEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecC-CCccccHHHHHHHHHHHHHHHhcCC
Confidence 899999999999999999999999999999887763 22 45567899885 4554545567788999999988775
No 304
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.46 E-value=78 Score=23.54 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=27.0
Q ss_pred EEEEEeC--CCccHHHHHHHHHHhCCceEEEEEEEec
Q 013389 37 LVKVDSA--RRHGILLEAVQVLTDLNLLIKKAYISSD 71 (444)
Q Consensus 37 ~V~v~~~--dr~Gll~~i~~vL~~~~l~I~~A~i~t~ 71 (444)
+|.+.|. ..+|++.++.++|.+.|.+|.-....+.
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s 39 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGAS 39 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCc
Confidence 3455554 4589999999999999999987766543
No 305
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=52.29 E-value=55 Score=28.76 Aligned_cols=51 Identities=27% Similarity=0.404 Sum_probs=40.3
Q ss_pred CCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe-eCCeEEEEEEEEc
Q 013389 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKD 164 (444)
Q Consensus 114 ~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T-~~~~~~dvf~V~d 164 (444)
..-..+.+.-.||.|.|+++-.++++.+|||...+-.- .+|++--...+..
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ 121 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDT 121 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEc
Confidence 34578888999999999999999999999999776655 3677655555544
No 306
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=51.04 E-value=1.7e+02 Score=30.51 Aligned_cols=87 Identities=10% Similarity=0.086 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhccCCCCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEee-cCCceEEEEEEEEcCCCCCCChHHHHH
Q 013389 308 QRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVS-TERDEALNIFYVTDEMGNPADPKIIEA 386 (444)
Q Consensus 308 ~~l~~~L~~al~rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~-T~g~~a~d~FyV~d~~g~~v~~~~~~~ 386 (444)
..+.+.++..|-+ .-+...+.+.-+||||=|.++.+.+...+-||...+-. ..+-....++..-...+ .++++.
T Consensus 309 ~~~~~~~~~~l~~-~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~----~~h~~~ 383 (409)
T TIGR02079 309 ERTEEIRERSLLY-EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELND----KEDFAG 383 (409)
T ss_pred HHHHHHHHHHHHh-cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCC----HHHHHH
Confidence 3455555555422 23357889999999999999999666566699866654 33333334443333322 467788
Q ss_pred HHHHHhhcccccc
Q 013389 387 VRQKIGLSNLKVK 399 (444)
Q Consensus 387 lr~~l~~~~~~~~ 399 (444)
+.+.|.+.-..++
T Consensus 384 i~~~L~~~Gy~~~ 396 (409)
T TIGR02079 384 LLERMAAADIHYE 396 (409)
T ss_pred HHHHHHHCCCCeE
Confidence 8888877554443
No 307
>PRK14642 hypothetical protein; Provisional
Probab=50.57 E-value=1.6e+02 Score=27.75 Aligned_cols=90 Identities=18% Similarity=0.081 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCC-----------CCCCCCHHHHHHHHHHHHHHhccCCCCceEE
Q 013389 260 LLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHID-----------GTPISSEPERQRVIQCLEAAVGRRASEGVRL 328 (444)
Q Consensus 260 LL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~-----------g~~l~~~~~~~~l~~~L~~al~rr~~~~~~l 328 (444)
|-.-+..++..+||.+.+-.+.. ++ .+ ..+|..++ +..++- +.++++.+.|...|+......+.|
T Consensus 3 l~~liepvv~~lG~eLvdve~~~-~~-~L-rV~ID~~~~~~~~~~~~~~~~gVti-dDC~~vSR~Is~~LDve~~~y~~L 78 (197)
T PRK14642 3 LQQIVEQTVTGLGYDLVEIERSA-GG-LL-RVTIDLPWVPPTEGAPVGPEQFVTV-EDCEKVTRQLQFALEVDGVDYKRL 78 (197)
T ss_pred HHHHHHHHHHHcCCEEEEEEEec-CC-EE-EEEEecCccccccccccccCCCccH-HHHHHHHHHHHHHhcccCccccEE
Confidence 34456778999999999999764 33 33 34454321 122433 479999999999997544444589
Q ss_pred EEEecCCCchHHHHHHHHHHCCceE
Q 013389 329 ELCMEDRQGLLADVTRTFRENGLNV 353 (444)
Q Consensus 329 ev~~~DRpGLL~~Itr~l~e~gl~I 353 (444)
||+++-=---|...-++-+-.|-.|
T Consensus 79 EVSSPGldRPLk~~~df~rfiG~~V 103 (197)
T PRK14642 79 EVSSPGIDRPLRHEQDFERFAGEVI 103 (197)
T ss_pred EEeCCCCCCCCCCHHHHHHhCCCeE
Confidence 9997733333666666666666544
No 308
>PRK08841 aspartate kinase; Validated
Probab=50.26 E-value=1.5e+02 Score=30.87 Aligned_cols=95 Identities=14% Similarity=0.268 Sum_probs=60.2
Q ss_pred CCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCCCC
Q 013389 245 RSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASE 324 (444)
Q Consensus 245 ~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~~~ 324 (444)
++.+.|++.+ +.++++...|.++|+++..-. +..... .|.|.. ...++++..+...+. ....
T Consensus 256 ~~~~~i~v~~----~~~~~i~~~l~~~~i~v~~i~--~~~~~~--~~~v~~---------~~~~~~~~~~~~~i~-~~~~ 317 (392)
T PRK08841 256 RDLALIEVES----ESLPSLTKQCQMLGIEVWNVI--EEADRA--QIVIKQ---------DACAKLKLVFDDKIR-NSES 317 (392)
T ss_pred CCeEEEEecc----chHHHHHHHHHHcCCCEEEEE--ecCCcE--EEEECH---------HHHHHHHHhCcccEE-EeCC
Confidence 4566777754 357889999999999988542 222111 344531 123333222211111 1123
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEE
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAE 357 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~ 357 (444)
-..+.+.+...||+.+++.++|.++|++|....
T Consensus 318 ~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~ 350 (392)
T PRK08841 318 VSLLTLVGLEANGMVEHACNLLAQNGIDVRQCS 350 (392)
T ss_pred EEEEEEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence 467899999999999999999999999995443
No 309
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=48.44 E-value=1.2e+02 Score=23.09 Aligned_cols=34 Identities=9% Similarity=0.118 Sum_probs=26.5
Q ss_pred EEEEEEc---cCCccHHHHHHHHHHhCCeeEEEEEEE
Q 013389 248 SVVNVQC---KDRTKLLFDVVCTLTDMEYVVFHATIN 281 (444)
Q Consensus 248 tvv~V~~---~DRpGLL~~i~~~L~~~~~nI~~A~I~ 281 (444)
+.|++.+ .+.+|+++++..+|++.++++..-...
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 3556643 478999999999999999999765443
No 310
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=47.04 E-value=89 Score=23.85 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=27.1
Q ss_pred EEEEEE---eCCCccHHHHHHHHHHhCCceEEEEEEEe
Q 013389 36 TLVKVD---SARRHGILLEAVQVLTDLNLLIKKAYISS 70 (444)
Q Consensus 36 t~V~v~---~~dr~Gll~~i~~vL~~~~l~I~~A~i~t 70 (444)
+.|++. -.+.+|++.++.++|++.+.++.-....+
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 356663 34778999999999999999997665543
No 311
>PRK11898 prephenate dehydratase; Provisional
Probab=46.89 E-value=94 Score=30.77 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=36.1
Q ss_pred ceEEEEEEcC-CcchHHHHHHHHHHCCCeEEEEEEEeeC-CeEEEEEEEEc
Q 013389 116 LTALELTGTD-RVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD 164 (444)
Q Consensus 116 ~t~i~v~~~D-rpGLl~~i~~vL~~~~~~I~~A~i~T~~-~~~~dvf~V~d 164 (444)
.+.+.+.-++ +||.|+++-.+|+.+|+|+..-+..-.. ....=.|||.=
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~ 246 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDV 246 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEE
Confidence 4566666655 6999999999999999999977766433 33344677765
No 312
>PLN02317 arogenate dehydratase
Probab=46.42 E-value=1.2e+02 Score=31.58 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=32.2
Q ss_pred ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee
Q 013389 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH 152 (444)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~ 152 (444)
.|.|.+.-+|+||.|+++-.+|+.+|+|+..-+..-.
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~ 319 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQ 319 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeec
Confidence 4778888899999999999999999999998776543
No 313
>PRK05925 aspartate kinase; Provisional
Probab=45.91 E-value=2.7e+02 Score=29.52 Aligned_cols=103 Identities=15% Similarity=0.105 Sum_probs=62.3
Q ss_pred CeEEEEEEeC-CCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCCCC
Q 013389 34 TATLVKVDSA-RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNS 112 (444)
Q Consensus 34 ~~t~V~v~~~-dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~~~ 112 (444)
+.+.|++.+. ..+|.++++.++|.++|++|.-.. ++..+ ..|.+...+- ....++.|...+...... ..
T Consensus 299 ~~~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~i~-s~~~s---is~~i~~~~~----~~~~~~~l~~~l~~~~~i--~~ 368 (440)
T PRK05925 299 NQALWSVDYNSLGLVRLEDVLGILRSLGIVPGLVM-AQNLG---VYFTIDDDDI----SEEYPQHLTDALSAFGTV--SC 368 (440)
T ss_pred CEEEEEEecCCcchhHHHHHHHHHHHcCCcEEEEe-ccCCE---EEEEEechhc----cHHHHHHHHHHhcCCceE--EE
Confidence 4456666543 246889999999999999985331 22221 2355543211 122333444333321100 12
Q ss_pred CCCceEEEEEEcC--CcchHHHHHHHHHHCCCeEEE
Q 013389 113 FNGLTALELTGTD--RVGLLSEVFAVLADLQCSVVE 146 (444)
Q Consensus 113 ~~~~t~i~v~~~D--rpGLl~~i~~vL~~~~~~I~~ 146 (444)
..+...|.|.|.. .+|+++++..+|++.|+||..
T Consensus 369 ~~~~a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~ 404 (440)
T PRK05925 369 EGPLALITMIGAKLASWKVVRTFTEKLRGYQTPVFC 404 (440)
T ss_pred ECCEEEEEEeCCCcccccHHHHHHHHHhhCCCCEEE
Confidence 2356678888763 478999999999999999974
No 314
>PRK14633 hypothetical protein; Provisional
Probab=44.36 E-value=1.9e+02 Score=25.74 Aligned_cols=91 Identities=13% Similarity=0.256 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCCCCCCCceEEEEEEc--C
Q 013389 48 ILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGT--D 125 (444)
Q Consensus 48 ll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~~~~~~~t~i~v~~~--D 125 (444)
+-..+..++.++|+.+.+..+...++|.+=+| +.-+.| ++ -+-+..+-++++..... .++-.+.+.++|++| |
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~~~lrV~-ID~~~G--v~-lddC~~vSr~i~~~LD~-~d~i~~~Y~LEVSSPGld 80 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGKLTIRIF-IDHENG--VS-VDDCQIVSKEISAVFDV-EDPVSGKYILEVSSPGMN 80 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEEEE-EeCCCC--CC-HHHHHHHHHHHHHHhcc-CcCCCCCeEEEEeCCCCC
Confidence 44567788999999999999987777866444 333345 22 22344444444433210 023356789999966 5
Q ss_pred CcchHHHHHHHHHHCCCeEE
Q 013389 126 RVGLLSEVFAVLADLQCSVV 145 (444)
Q Consensus 126 rpGLl~~i~~vL~~~~~~I~ 145 (444)
|| |...-..-...|-.|.
T Consensus 81 Rp--L~~~~~f~r~~G~~v~ 98 (150)
T PRK14633 81 RQ--IFNIIQAQALVGFNVK 98 (150)
T ss_pred CC--CCCHHHHHHhCCCeEE
Confidence 55 4445555555554443
No 315
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=44.15 E-value=2.1e+02 Score=25.80 Aligned_cols=31 Identities=16% Similarity=0.271 Sum_probs=27.4
Q ss_pred eEEEEEEccCCccHHHHHHHHHHhCCeeEEE
Q 013389 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFH 277 (444)
Q Consensus 247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~ 277 (444)
...+.|.-+|+||-|-.+..=|+.+|.||..
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiIt 35 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIIT 35 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEE
Confidence 3567888899999999999999999999975
No 316
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.71 E-value=24 Score=27.90 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.5
Q ss_pred EcCCcchHHHHHHHHHHCCCeEEEE
Q 013389 123 GTDRVGLLSEVFAVLADLQCSVVEA 147 (444)
Q Consensus 123 ~~DrpGLl~~i~~vL~~~~~~I~~A 147 (444)
.++.||.+++|..+|+++|+||.--
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI 35 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVV 35 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEE
Confidence 3578999999999999999999965
No 317
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=42.56 E-value=1.1e+02 Score=21.62 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=23.9
Q ss_pred EEEEe---CCCccHHHHHHHHHHhCCceEEEEE
Q 013389 38 VKVDS---ARRHGILLEAVQVLTDLNLLIKKAY 67 (444)
Q Consensus 38 V~v~~---~dr~Gll~~i~~vL~~~~l~I~~A~ 67 (444)
|++.+ .+.+|++.++.+.|++.|.++.-..
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 45543 4678999999999999999995544
No 318
>PRK02001 hypothetical protein; Validated
Probab=42.34 E-value=1.4e+02 Score=26.74 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=54.5
Q ss_pred HHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCchHHHHHH
Q 013389 265 VCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTR 344 (444)
Q Consensus 265 ~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~DRpGLL~~Itr 344 (444)
..++..+|+.+.+-.+...+ ..- .+|...+| ++- +.++.+.++|.+.|+.. ...|.|||+++-=---|..--+
T Consensus 12 e~~~~~~g~eLvdv~~~~~~--~lr-V~ID~~~G--v~l-ddC~~vSr~is~~LD~~-d~~Y~LEVSSPGldRpL~~~~~ 84 (152)
T PRK02001 12 EELLEGPELFLVDLTISPDN--KIV-VEIDGDEG--VWI-EDCVELSRAIEHNLDRE-EEDFELEVGSAGLTSPLKVPRQ 84 (152)
T ss_pred HhhhhhcCcEEEEEEEEcCC--EEE-EEEECCCC--CCH-HHHHHHHHHHHHHhcCC-CCCeEEEEeCCCCCCcCCCHHH
Confidence 34577899999999887532 232 44543334 333 37999999999998743 4689999998733333666666
Q ss_pred HHHHCCceE
Q 013389 345 TFRENGLNV 353 (444)
Q Consensus 345 ~l~e~gl~I 353 (444)
+-+-.|-.|
T Consensus 85 f~r~~G~~v 93 (152)
T PRK02001 85 YKKNIGREL 93 (152)
T ss_pred HHHhCCCEE
Confidence 666666554
No 319
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=41.69 E-value=1.2e+02 Score=32.13 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=41.1
Q ss_pred eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec-CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 013389 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA-GERAYLEFYIRHIDGTPISSEPERQRVIQCLE 315 (444)
Q Consensus 247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~ 315 (444)
.+.|.+..+|+||-|+++..+|.++|+|+.+-.-.-. +..-.-.|||. .+|.. ++ ..+.+.+.|.
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD-~eg~~--~~-~v~~aL~~Lk 81 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVE-FDEAS--DR-KLEGVIEHLR 81 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEE-EecCc--cH-HHHHHHHHHH
Confidence 4666667799999999999999999999986433222 22222247775 44543 12 3444444444
No 320
>PRK08639 threonine dehydratase; Validated
Probab=40.12 E-value=3e+02 Score=28.78 Aligned_cols=87 Identities=11% Similarity=0.060 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhccCCCCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEee-cCCceEEEEEEEEcCCCCCCChHHHHH
Q 013389 308 QRVIQCLEAAVGRRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVS-TERDEALNIFYVTDEMGNPADPKIIEA 386 (444)
Q Consensus 308 ~~l~~~L~~al~rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~-T~g~~a~d~FyV~d~~g~~v~~~~~~~ 386 (444)
..+.+.+...+. +..+...+.+.-+||||-|.++.+.+...+-||...+-. ..+.....++..-... ++++++.
T Consensus 320 ~~~~~~~~~~l~-~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~----~~~h~~~ 394 (420)
T PRK08639 320 ERMPEIKERSLI-YEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELK----DAEDYDG 394 (420)
T ss_pred HHHHHHHHHHHH-hcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeC----CHHHHHH
Confidence 344444544442 233457789999999999999999555544499877544 1222222333332222 2367888
Q ss_pred HHHHHhhcccccc
Q 013389 387 VRQKIGLSNLKVK 399 (444)
Q Consensus 387 lr~~l~~~~~~~~ 399 (444)
+.++|.+.-..++
T Consensus 395 i~~~L~~~Gy~~~ 407 (420)
T PRK08639 395 LIERMEAFGPSYI 407 (420)
T ss_pred HHHHHHHCCCceE
Confidence 8888887655443
No 321
>PRK14632 hypothetical protein; Provisional
Probab=39.56 E-value=2.2e+02 Score=26.04 Aligned_cols=90 Identities=16% Similarity=0.140 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCCCCCCCceEEEEEEc--C
Q 013389 48 ILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGT--D 125 (444)
Q Consensus 48 ll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~~~~~~~t~i~v~~~--D 125 (444)
+-..+..++..+|+.+.+..+...++|.+=+| +.-+.|--+ +-+..+-++++..... .++-.+.+.++|++| |
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~~~~~~lrV~-ID~~~GV~l---dDC~~vSr~is~~LD~-~d~i~~~Y~LEVSSPGld 84 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSYGGRTVVRLF-VDGPEGVTI---DQCAEVSRHVGLALEV-EDVISSAYVLEVSSPGLE 84 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEEEE-EECCCCCCH---HHHHHHHHHHHHHhcc-cccCCCCeEEEEeCCCCC
Confidence 44556778889999999999887667776544 332344222 2333344444332210 023356788999966 5
Q ss_pred CcchHHHHHHHHHHCCCeE
Q 013389 126 RVGLLSEVFAVLADLQCSV 144 (444)
Q Consensus 126 rpGLl~~i~~vL~~~~~~I 144 (444)
|| |...-..-...|-.|
T Consensus 85 Rp--L~~~~~f~r~iG~~V 101 (172)
T PRK14632 85 RP--FFRAEQMSPYVGRQI 101 (172)
T ss_pred Cc--CCCHHHHHHhCCCEE
Confidence 66 444444444444443
No 322
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=39.17 E-value=1.4e+02 Score=21.15 Aligned_cols=30 Identities=17% Similarity=0.378 Sum_probs=24.8
Q ss_pred EEEEE---cCCcchHHHHHHHHHHCCCeEEEEE
Q 013389 119 LELTG---TDRVGLLSEVFAVLADLQCSVVEAK 148 (444)
Q Consensus 119 i~v~~---~DrpGLl~~i~~vL~~~~~~I~~A~ 148 (444)
|.+.| .+.||+++++...|+..+++|....
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 55554 4679999999999999999997654
No 323
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.25 E-value=1.4e+02 Score=21.07 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=25.1
Q ss_pred EEEEEE---cCCcchHHHHHHHHHHCCCeEEEEE
Q 013389 118 ALELTG---TDRVGLLSEVFAVLADLQCSVVEAK 148 (444)
Q Consensus 118 ~i~v~~---~DrpGLl~~i~~vL~~~~~~I~~A~ 148 (444)
.|.+.| .+.||+++++...|++++++|....
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 355655 3679999999999999999997654
No 324
>PRK00907 hypothetical protein; Provisional
Probab=38.11 E-value=1.2e+02 Score=24.94 Aligned_cols=64 Identities=13% Similarity=0.083 Sum_probs=46.8
Q ss_pred eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEE----EecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATI----NTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEA 316 (444)
Q Consensus 247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I----~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~ 316 (444)
.+.+.|.|.+.++|...|..++..+.-.....++ ++.|.+..-++.|+-. +.++++.|=++|.+
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at------s~eQld~iY~~L~~ 84 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE------SREQYDAAHQALRD 84 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC------CHHHHHHHHHHHhh
Confidence 3688999999999999999999988776655655 4456677766666532 34467777666644
No 325
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=37.74 E-value=69 Score=34.01 Aligned_cols=52 Identities=13% Similarity=0.094 Sum_probs=39.6
Q ss_pred CCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCe-EE-EEEEEEc
Q 013389 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGR-IA-SLIYVKD 164 (444)
Q Consensus 113 ~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~-~~-dvf~V~d 164 (444)
....+.|.+..+|+||-|+++-.+|+.+|+|+..-+..-..+. .. -.|||.=
T Consensus 28 ~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~ 81 (464)
T TIGR01270 28 GVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV 81 (464)
T ss_pred CCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE
Confidence 3456778888899999999999999999999997766554332 22 3677765
No 326
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=37.67 E-value=5.5e+02 Score=27.63 Aligned_cols=123 Identities=18% Similarity=0.180 Sum_probs=75.0
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC---
Q 013389 33 PTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG--- 108 (444)
Q Consensus 33 ~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~-t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~--- 108 (444)
..-..+.|.-+||||-|.+++++|.. .||..-+-. ...+.+ -+|....-.+ .+-++.|.+.|......
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a-~v~vgie~~~-----~~~~~~l~~~L~~~Gy~~~d 394 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDA-HIFVGVQLSN-----PQERQEILARLNDGGYSVVD 394 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeE-EEEEEEEeCC-----HHHHHHHHHHHHHcCCCeEE
Confidence 35568889999999999999999997 577776554 333333 2444333222 33456666677654310
Q ss_pred -----------------CCCCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC---CeEEEEEEEEc
Q 013389 109 -----------------RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN---GRIASLIYVKD 164 (444)
Q Consensus 109 -----------------~~~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~---~~~~dvf~V~d 164 (444)
++....+--.+.+.=|-|||-|-+.-.+| .-+.||.--+=--++ |+++.-|.+.+
T Consensus 395 ls~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l-~~~~~It~f~Yr~~~~~~g~~l~gi~~~~ 469 (499)
T TIGR01124 395 LTDDELAKLHVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTL-QGYWNISLFHYRNHGADYGRVLAGFQVPD 469 (499)
T ss_pred CCCCHHHHHHHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhc-CCCCceeeEEEecCCcccCCEEEEEecCc
Confidence 11111223466777899999888876643 345677766653332 45655565543
No 327
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=36.85 E-value=53 Score=35.44 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=32.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee
Q 013389 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH 152 (444)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~ 152 (444)
.++|.+.||.|+-.+|...|..+++|+...+|...
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~ 36 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI 36 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC
Confidence 58999999999999999999999999999999764
No 328
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=36.34 E-value=96 Score=23.44 Aligned_cols=34 Identities=0% Similarity=0.169 Sum_probs=24.8
Q ss_pred HHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCC
Q 013389 52 AVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLN 85 (444)
Q Consensus 52 i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~ 85 (444)
+.+.+...|..+..=.+.|.||+.+.+|.+....
T Consensus 1 ~~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 1 VPELIEKHGYPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHHTT---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred CHHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCC
Confidence 3567889999999999999999999999998654
No 329
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=36.25 E-value=56 Score=24.66 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=24.9
Q ss_pred EEEEEEc-CCcchHHHHHHHHHHCCCeEEEE
Q 013389 118 ALELTGT-DRVGLLSEVFAVLADLQCSVVEA 147 (444)
Q Consensus 118 ~i~v~~~-DrpGLl~~i~~vL~~~~~~I~~A 147 (444)
.|+|.+. +.||.+++|.+.|+++|+||.--
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 4555544 56999999999999999999976
No 330
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=35.59 E-value=3e+02 Score=24.50 Aligned_cols=90 Identities=12% Similarity=0.133 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCCCCCCCceEEEEEEc--
Q 013389 48 ILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGT-- 124 (444)
Q Consensus 48 ll~~i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~~~~~~~t~i~v~~~-- 124 (444)
+-..+..++..+|+.+.+..+.. .++|.+-+| |..+.| + +-+.+..+-++++..... .++-.+.+.++|.+|
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~-Id~~~g--v-~iddc~~~Sr~is~~LD~-~d~i~~~Y~LEVSSPGi 83 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRIY-IDKEGG--I-DLDDCEEVSRQISAVLDV-EDPIPGAYTLEVSSPGL 83 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEE-EECCCC--C-CHHHHHHHHHHHHHHhcc-ccCCCCCeEEEEeCCCC
Confidence 44566888999999999999986 456666444 332334 2 223344444444333210 023345688999966
Q ss_pred CCcchHHHHHHHHHHCCCeE
Q 013389 125 DRVGLLSEVFAVLADLQCSV 144 (444)
Q Consensus 125 DrpGLl~~i~~vL~~~~~~I 144 (444)
||| |...-..-...|-.|
T Consensus 84 ~Rp--L~~~~~f~r~~G~~v 101 (154)
T PRK00092 84 DRP--LKKARDFRRFIGREV 101 (154)
T ss_pred CCc--CCCHHHHHHhCCCeE
Confidence 565 333333334444333
No 331
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=34.99 E-value=1.9e+02 Score=21.56 Aligned_cols=30 Identities=27% Similarity=0.405 Sum_probs=24.3
Q ss_pred EEEEEEcC--CcchHHHHHHHHHHCCCeEEEE
Q 013389 118 ALELTGTD--RVGLLSEVFAVLADLQCSVVEA 147 (444)
Q Consensus 118 ~i~v~~~D--rpGLl~~i~~vL~~~~~~I~~A 147 (444)
.|.+.|.. +||+++++..+|++.|++|...
T Consensus 4 ~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i 35 (66)
T cd04915 4 IVSVIGRDLSTPGVLARGLAALAEAGIEPIAA 35 (66)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHCCCCEEEE
Confidence 45666643 6899999999999999999743
No 332
>PRK14647 hypothetical protein; Provisional
Probab=33.31 E-value=3.4e+02 Score=24.37 Aligned_cols=90 Identities=18% Similarity=0.147 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCCCCCCCceEEEEEEc--
Q 013389 48 ILLEAVQVLTDLNLLIKKAYISSD-GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGT-- 124 (444)
Q Consensus 48 ll~~i~~vL~~~~l~I~~A~i~t~-~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~~~~~~~t~i~v~~~-- 124 (444)
+-..+..++..+|+.+.+..+... ++|.+=+| +..+.| ++ -+-+..+-++++..... .++-.+.+.++|++|
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV~-ID~~~g--vs-lddC~~vSr~is~~LD~-~d~i~~~Y~LEVSSPG~ 84 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVLRLF-IDKEGG--VN-LDDCAEVSRELSEILDV-EDFIPERYTLEVSSPGL 84 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEEEEE-EeCCCC--CC-HHHHHHHHHHHHHHHcc-cccCCCCeEEEEcCCCC
Confidence 445567789999999999999874 45776444 332344 22 12334444444333210 023346789999976
Q ss_pred CCcchHHHHHHHHHHCCCeE
Q 013389 125 DRVGLLSEVFAVLADLQCSV 144 (444)
Q Consensus 125 DrpGLl~~i~~vL~~~~~~I 144 (444)
||| |...-..-...|-.|
T Consensus 85 ~Rp--L~~~~~f~r~~G~~v 102 (159)
T PRK14647 85 DRP--LKKEADYERYAGRLV 102 (159)
T ss_pred CCc--CCCHHHHHHhCCcEE
Confidence 566 333444444444443
No 333
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.31 E-value=2e+02 Score=21.25 Aligned_cols=44 Identities=7% Similarity=0.037 Sum_probs=29.9
Q ss_pred EEEEEcc--CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEE
Q 013389 249 VVNVQCK--DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIR 294 (444)
Q Consensus 249 vv~V~~~--DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~ 294 (444)
.|.+.|. ..||++.++..+|.+.|++|......+.+-.. .|.|.
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~si--s~~v~ 48 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGASKVNI--SLIVN 48 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceE--EEEEe
Confidence 4555554 46899999999999999999765444432222 25554
No 334
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=33.13 E-value=3.5e+02 Score=31.74 Aligned_cols=79 Identities=9% Similarity=0.078 Sum_probs=52.0
Q ss_pred CCeEEEeecC-CCCeEEEEE---EeCCCccHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHH
Q 013389 22 TPRVVIDNAV-CPTATLVKV---DSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVIS 96 (444)
Q Consensus 22 ~p~v~i~~~~-~~~~t~V~v---~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d~~g~~~~~~~~~~ 96 (444)
.|.+.+.... +.....+.+ -.+-..|+|+.+..++.-+||.+..+|+-+ .+|..+-.|+|....+....+.++.+
T Consensus 216 g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~~~~~~~~~~ 295 (1002)
T PTZ00324 216 GPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTADDNPDLSIED 295 (1002)
T ss_pred CCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCCCcccccHHH
Confidence 4655554333 223323333 456678999999999999999999999965 47777778999976554332333333
Q ss_pred HHHH
Q 013389 97 YIEQ 100 (444)
Q Consensus 97 ~i~~ 100 (444)
.+++
T Consensus 296 ~~~~ 299 (1002)
T PTZ00324 296 RASL 299 (1002)
T ss_pred HHHh
Confidence 3443
No 335
>PRK14640 hypothetical protein; Provisional
Probab=32.86 E-value=3.5e+02 Score=24.17 Aligned_cols=90 Identities=12% Similarity=0.062 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCCCCCCCceEEEEEEc--
Q 013389 48 ILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGT-- 124 (444)
Q Consensus 48 ll~~i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~~~~~~~t~i~v~~~-- 124 (444)
+-..+..++..+|+.+.+..+.. .++|.+=+| +..+.| ++ -+-+..+-++|+..... .++-.+.+.++|++|
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~-ID~~~g--v~-lddC~~vSr~is~~LD~-~d~i~~~Y~LEVSSPGl 82 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTLRVY-IDGENG--VS-VENCAEVSHQVGAIMDV-EDPITEEYYLEVSSPGL 82 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEE-EECCCC--CC-HHHHHHHHHHHHHHhcc-cccCCCCeEEEEeCCCC
Confidence 45567788999999999999876 566776444 433345 32 22344444444433210 023356789999966
Q ss_pred CCcchHHHHHHHHHHCCCeE
Q 013389 125 DRVGLLSEVFAVLADLQCSV 144 (444)
Q Consensus 125 DrpGLl~~i~~vL~~~~~~I 144 (444)
||| |...-..-...|-.|
T Consensus 83 ~Rp--L~~~~~f~r~~G~~v 100 (152)
T PRK14640 83 DRP--LFKVAQFEKYVGQEA 100 (152)
T ss_pred CCc--CCCHHHHHHhCCCeE
Confidence 555 444555555555554
No 336
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=32.22 E-value=1.5e+02 Score=23.69 Aligned_cols=51 Identities=10% Similarity=-0.001 Sum_probs=36.7
Q ss_pred CCeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCC
Q 013389 245 RSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPI 301 (444)
Q Consensus 245 ~~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l 301 (444)
.....+.+...| +......|..+|+++........++. ..|++.|++|..+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DPdG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADPEGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECCCCCEE
Confidence 455677888888 66677788999999887644333222 4699999999854
No 337
>PRK14639 hypothetical protein; Provisional
Probab=31.94 E-value=3e+02 Score=24.27 Aligned_cols=86 Identities=17% Similarity=0.195 Sum_probs=49.1
Q ss_pred HHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCCCCCCCceEEEEEEc--CCcc
Q 013389 52 AVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGT--DRVG 128 (444)
Q Consensus 52 i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~~~~~~~t~i~v~~~--DrpG 128 (444)
+-.++..+|+.+.+..... .+.|.+=+| +..+.| ++ -+-+..+-++++..... .++-.+.+.++|++| |||
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~-Id~~~g--v~-iddC~~vSr~is~~LD~-~d~i~~~Y~LEVSSPGl~Rp- 76 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVY-ITKEGG--VN-LDDCERLSELLSPIFDV-EPPVSGEYFLEVSSPGLERK- 76 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEE-EeCCCC--CC-HHHHHHHHHHHHHHhcc-ccccCCCeEEEEeCCCCCCc-
Confidence 4568889999999999876 556877554 333334 32 22334444444332210 023456788999966 555
Q ss_pred hHHHHHHHHHHCCCeE
Q 013389 129 LLSEVFAVLADLQCSV 144 (444)
Q Consensus 129 Ll~~i~~vL~~~~~~I 144 (444)
|...-..-...|-.|
T Consensus 77 -L~~~~~f~r~~G~~v 91 (140)
T PRK14639 77 -LSKIEHFAKSIGELV 91 (140)
T ss_pred -CCCHHHHHHhCCCEE
Confidence 444444445555554
No 338
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.38 E-value=1.1e+02 Score=21.62 Aligned_cols=30 Identities=17% Similarity=0.379 Sum_probs=24.9
Q ss_pred EEEEe---cCCCchHHHHHHHHHHCCceEEEEE
Q 013389 328 LELCM---EDRQGLLADVTRTFRENGLNVTRAE 357 (444)
Q Consensus 328 lev~~---~DRpGLL~~Itr~l~e~gl~I~~A~ 357 (444)
|.+.+ .+.+|++.++...|.+.|+++....
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 45544 3679999999999999999997775
No 339
>PLN02828 formyltetrahydrofolate deformylase
Probab=30.60 E-value=4.8e+02 Score=25.70 Aligned_cols=98 Identities=8% Similarity=-0.020 Sum_probs=52.1
Q ss_pred HHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccC-----CCCCCCCCceEEEEEEc
Q 013389 52 AVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY-----GRSNSFNGLTALELTGT 124 (444)
Q Consensus 52 i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~-----~~~~~~~~~t~i~v~~~ 124 (444)
+++.|+++|+||.+++.++ ..|+|+-...+.. .+.....+++.+.+.. +..... .+-........|-|...
T Consensus 1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~riavlvS 78 (268)
T PLN02828 1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIF-DPVKWPRAQMDEDFQE-ISKHFKALKSVVRVPGLDPKYKIAVLAS 78 (268)
T ss_pred CcHHHHhCCCCEeEcccccCCCCCeeEEEEEEEe-CCCCCCHHHHHHHHHH-HHHhcCCcceEEEEccCCCCcEEEEEEc
Confidence 4689999999999999987 4566653433332 2322222223333332 222211 00011112234555555
Q ss_pred CCcchHHHHHHHHHHCCCeEEEEEEEe
Q 013389 125 DRVGLLSEVFAVLADLQCSVVEAKVWT 151 (444)
Q Consensus 125 DrpGLl~~i~~vL~~~~~~I~~A~i~T 151 (444)
-...-|.++-.....-.+++.=+-+.|
T Consensus 79 g~g~nl~~ll~~~~~g~l~~eI~~ViS 105 (268)
T PLN02828 79 KQDHCLIDLLHRWQDGRLPVDITCVIS 105 (268)
T ss_pred CCChhHHHHHHhhhcCCCCceEEEEEe
Confidence 555667777777777766665555555
No 340
>PRK02047 hypothetical protein; Provisional
Probab=30.22 E-value=2.7e+02 Score=22.58 Aligned_cols=65 Identities=14% Similarity=0.053 Sum_probs=45.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE----ecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhc
Q 013389 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS----SDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETI 105 (444)
Q Consensus 35 ~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~----t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~ 105 (444)
.+.++|.+++.+++...+.+++..+...+..+.++ +.|.+.--.+.|.-. +++.++.|-++|...
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~------s~eq~~~iY~~L~~~ 84 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRAT------SREQLDNIYRALTGH 84 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEEC------CHHHHHHHHHHHhhC
Confidence 47899999999999999999999997777666663 345554433344432 344556677777654
No 341
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=30.21 E-value=1.3e+02 Score=28.93 Aligned_cols=103 Identities=12% Similarity=0.086 Sum_probs=62.4
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEE----EEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhcc-
Q 013389 32 CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKK----AYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIH- 106 (444)
Q Consensus 32 ~~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~----A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~- 106 (444)
.+-+.+|.+.+.|+.....+|-.+|..+|.++.. .+++..-|.+ .+... + ...+ +.++.+|....
T Consensus 89 ~Gvaiive~lTDN~nRt~~~ir~~~~K~gg~l~~~gsv~~~F~~kG~i----~~~~~-~--~~~d---~~~e~aIe~Gae 158 (234)
T PF01709_consen 89 GGVAIIVECLTDNKNRTVSDIRSIFKKNGGSLGPSGSVSFMFERKGVI----EVSKK-D--LDED---ELMEDAIEAGAE 158 (234)
T ss_dssp TTEEEEEEEEES-HHHHHHHHHHHHHTTT-EEE-TTSSGGGEEEEEEE----EEEHC-C--S-HH---HHHHHHHHHTES
T ss_pred CCcEEEEEEeCCCHhHHHHHHHHHHHHcCceeCCCCcceeeeeeeEEE----EEEeC-C--CChH---HHHHHHHhCCCc
Confidence 4456799999999999999999999999999877 5556655533 33321 1 1112 23344443221
Q ss_pred CCCCCCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEE
Q 013389 107 YGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW 150 (444)
Q Consensus 107 ~~~~~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~ 150 (444)
.+ ... +.. ++|++ .|.-|..+...|...|+.|.++.+.
T Consensus 159 Dv--e~~-d~~-~~~~c--~p~~~~~v~~~L~~~g~~i~~~e~~ 196 (234)
T PF01709_consen 159 DV--EED-DGE-FEFIC--DPSDLSAVKKALEKKGYEIESAELE 196 (234)
T ss_dssp EE--EEC-TSE-EEEEE--EGGGHHHHHHHHHHTT---SEEEEE
T ss_pred Ee--eec-CCe-EEEEE--CHHHHHHHHHHHHHcCCCeeEEEEE
Confidence 00 111 222 55554 4788999999999999999988873
No 342
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=29.15 E-value=53 Score=25.41 Aligned_cols=53 Identities=19% Similarity=0.237 Sum_probs=34.3
Q ss_pred CCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 125 DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 125 DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
-.||++++|..+|+++|+||.--. + .. .--.|-|... .+ .++.++.|.+.|++
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~--~-s~-~~isftv~~~----~~-~~~~l~~l~~el~~ 65 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIS--T-SE-VHVSMALHME----NA-EDTNLDAAVKDLQK 65 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEehh----hc-ChHHHHHHHHHHHH
Confidence 468999999999999999998653 2 22 2223444331 12 12366777777776
No 343
>PRK00110 hypothetical protein; Validated
Probab=28.64 E-value=5.5e+02 Score=24.91 Aligned_cols=101 Identities=15% Similarity=0.075 Sum_probs=67.5
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEE----EEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhcc-
Q 013389 32 CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKK----AYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIH- 106 (444)
Q Consensus 32 ~~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~----A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~- 106 (444)
.+-+.+|.+.+.|+....++|-.+|..+|.++.. ++++..-|.+. | .. + ++ -+.++.+|....
T Consensus 93 ~GvaiiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~kG~i~--~--~~--~----~~--d~~~e~aieaGae 160 (245)
T PRK00110 93 GGVAIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDRKGVIV--I--EP--L----DE--DELMEAALEAGAE 160 (245)
T ss_pred CCeEEEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEeccceEEE--e--CC--C----CH--HHHHHHHHhCCCC
Confidence 4456799999999999999999999999999854 55666666443 3 21 1 11 123444444221
Q ss_pred CCCCCCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEE
Q 013389 107 YGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW 150 (444)
Q Consensus 107 ~~~~~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~ 150 (444)
.+ ....+ .+.|++ .|--|..+...|...|+.|.++.+.
T Consensus 161 Dv--~~e~~--~~~i~~--~p~~~~~v~~~L~~~g~~~~~sei~ 198 (245)
T PRK00110 161 DV--ETDDE--SFEVIT--APEDFEAVRDALEAAGLEAESAEVT 198 (245)
T ss_pred Ee--eccCC--eEEEEE--CHHHHHHHHHHHHHcCCCeeeeEEE
Confidence 00 11122 344444 5888999999999999999977765
No 344
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=26.94 E-value=3.5e+02 Score=23.38 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=31.9
Q ss_pred CCCeEEEEEEcc---CCccHHHHHHHHHHhCCeeEEEEEEEec
Q 013389 244 DRSYSVVNVQCK---DRTKLLFDVVCTLTDMEYVVFHATINTA 283 (444)
Q Consensus 244 ~~~~tvv~V~~~---DRpGLL~~i~~~L~~~~~nI~~A~I~T~ 283 (444)
++++..+.+.++ |-+|+|+.|.+.|+++|+-|+- ++|.
T Consensus 60 ~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFa--vSty 100 (128)
T COG3603 60 EKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFA--VSTY 100 (128)
T ss_pred cCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEE--EEec
Confidence 568888888865 8899999999999999999985 4443
No 345
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=26.52 E-value=7.4e+02 Score=27.36 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=70.4
Q ss_pred cCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEecC
Q 013389 255 KDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCMED 334 (444)
Q Consensus 255 ~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~D 334 (444)
.+-+..+.+++..+.++|.+ .+++.|..|.. .+.+..++.+.|.+.+ ...|++.++|
T Consensus 151 ~~~~~~~~~~a~~l~~~Gad---------------~i~i~Dt~G~l--~P~~~~~lv~~lk~~~------~~pi~~H~Hn 207 (593)
T PRK14040 151 VHTLQTWVDLAKQLEDMGVD---------------SLCIKDMAGLL--KPYAAYELVSRIKKRV------DVPLHLHCHA 207 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCC---------------EEEECCCCCCc--CHHHHHHHHHHHHHhc------CCeEEEEECC
Confidence 34578899999999999874 36787877763 3557777878877654 2459999999
Q ss_pred CCchHHHHHHHHHHCCceEEEEEeecCCceE
Q 013389 335 RQGLLADVTRTFRENGLNVTRAEVSTERDEA 365 (444)
Q Consensus 335 RpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a 365 (444)
..|+=..=+-.-.+.|+++...-+.-.|+++
T Consensus 208 t~GlA~An~laAieAGa~~vD~ai~glG~~~ 238 (593)
T PRK14040 208 TTGLSTATLLKAIEAGIDGVDTAISSMSMTY 238 (593)
T ss_pred CCchHHHHHHHHHHcCCCEEEeccccccccc
Confidence 9999888888888999999999999999874
No 346
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.46 E-value=4.3e+02 Score=23.79 Aligned_cols=78 Identities=13% Similarity=0.200 Sum_probs=48.1
Q ss_pred ccHHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCCCCCCCceEEEEEEc
Q 013389 46 HGILLEAVQVLTDLNLLIKKAYISSDG-RFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGT 124 (444)
Q Consensus 46 ~Gll~~i~~vL~~~~l~I~~A~i~t~~-g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~~~~~~~t~i~v~~~ 124 (444)
..+..-+-.++.++|+.+.+..+...+ +|++=+| .|..|. + +=+-++.+.+++++.... .++-.+.|.++|++|
T Consensus 8 ~~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~--id~~g~-v-~lddC~~vSr~is~~LD~-edpi~~~Y~LEVSSP 82 (153)
T COG0779 8 EKVTELIEPVVESLGFELVDVEFVKEGRDSVLRIY--IDKEGG-V-TLDDCADVSRAISALLDV-EDPIEGAYFLEVSSP 82 (153)
T ss_pred HHHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEE--eCCCCC-C-CHHHHHHHHHHHHHHhcc-CCcccccEEEEeeCC
Confidence 345666778899999999999999866 6887554 333332 2 112344444444433210 123457889999966
Q ss_pred --CCcc
Q 013389 125 --DRVG 128 (444)
Q Consensus 125 --DrpG 128 (444)
|||=
T Consensus 83 GldRpL 88 (153)
T COG0779 83 GLDRPL 88 (153)
T ss_pred CCCCCc
Confidence 7773
No 347
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=26.19 E-value=2.5e+02 Score=22.36 Aligned_cols=51 Identities=14% Similarity=0.012 Sum_probs=36.7
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCC
Q 013389 33 PTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKL 89 (444)
Q Consensus 33 ~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~ 89 (444)
.....+.+...| +.++.+.|...|.+|...-....++ ...|++.|++|+.+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~--~~~~~~~DPdG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGV--GRFAVFADPEGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCc--EEEEEEECCCCCEE
Confidence 455667777777 7788888999999988764433322 24689999999764
No 348
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=25.89 E-value=1.3e+02 Score=24.12 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=35.9
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCce-EEEEEEEEcCCCCCCC
Q 013389 327 RLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDE-ALNIFYVTDEMGNPAD 380 (444)
Q Consensus 327 ~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~-a~d~FyV~d~~g~~v~ 380 (444)
.+-+...++ +..+.+.|.++|+.+........+.. ....||+.|++|..+.
T Consensus 70 hi~~~~~~~---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve 121 (125)
T cd07253 70 DLCLITEPP---IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIE 121 (125)
T ss_pred eEEEEeccc---HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEE
Confidence 444555554 88899999999999876554433322 3467899999998763
No 349
>PRK00341 hypothetical protein; Provisional
Probab=25.31 E-value=3.5e+02 Score=22.01 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=43.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE---ecCC-eEEEEEEEEeCCCCCCCchHHHHHHHHHhhhc
Q 013389 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS---SDGR-FFMDVFHVTDLNGNKLTDESVISYIEQSLETI 105 (444)
Q Consensus 36 t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~---t~~g-~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~ 105 (444)
+.++|.+.+.+++...|.+++..+. ....+.++ |.+| +.--.+.|.- +++..++.|-++|...
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~------~s~~q~~~iy~~L~~~ 84 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVA------TDEDQLQDINSALRAT 84 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEE------CCHHHHHHHHHHHhhC
Confidence 8899999999999999999998876 66666554 3444 4433333433 2345566777777654
No 350
>PRK14630 hypothetical protein; Provisional
Probab=25.23 E-value=4.8e+02 Score=23.06 Aligned_cols=76 Identities=9% Similarity=0.039 Sum_probs=46.4
Q ss_pred CccHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCCCCCCCceEEEEEE
Q 013389 45 RHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTG 123 (444)
Q Consensus 45 r~Gll~~i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~~~~~~~t~i~v~~ 123 (444)
..-+-..+..++..+|+.+.+..... .++|.+=+| +.-+.| ++ -+-+..+-+.+..... ++-.+.+.++|++
T Consensus 7 ~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~lrV~-Id~~~g--V~-idDC~~vSr~i~~~ld---~~i~~~Y~LEVSS 79 (143)
T PRK14630 7 NSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKIQIV-LYKKDS--FG-VDTLCDLHKMILLILE---AVLKYNFSLEIST 79 (143)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEE-EECCCC--CC-HHHHHHHHHHHHHHhc---ccCCCCeEEEEeC
Confidence 34566778889999999999999876 566776444 443345 32 1233444444432211 1334568899986
Q ss_pred c--CCc
Q 013389 124 T--DRV 127 (444)
Q Consensus 124 ~--Drp 127 (444)
| |||
T Consensus 80 PGldRp 85 (143)
T PRK14630 80 PGINRK 85 (143)
T ss_pred CCCCCc
Confidence 6 566
No 351
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=25.09 E-value=1.1e+02 Score=26.38 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.9
Q ss_pred cCCCchHHHHHHHHHHCCceEEE
Q 013389 333 EDRQGLLADVTRTFRENGLNVTR 355 (444)
Q Consensus 333 ~DRpGLL~~Itr~l~e~gl~I~~ 355 (444)
-|-+|+|+.|.+.|+++|+.|.-
T Consensus 74 FgltGilasV~~pLsd~gigIFa 96 (128)
T COG3603 74 FGLTGILASVSQPLSDNGIGIFA 96 (128)
T ss_pred CCcchhhhhhhhhHhhCCccEEE
Confidence 48899999999999999999864
No 352
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=24.23 E-value=1.3e+02 Score=22.67 Aligned_cols=43 Identities=14% Similarity=0.263 Sum_probs=30.4
Q ss_pred EEEEEeC-CCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEe
Q 013389 37 LVKVDSA-RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTD 83 (444)
Q Consensus 37 ~V~v~~~-dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d 83 (444)
.|+|.+. +.+|.++++.+.|++.|+||---..+ ... -.|.|..
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~-~~~---isFtv~~ 46 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLINVS-PEE---VIFTVDG 46 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec-CCC---EEEEEch
Confidence 4555544 56899999999999999999877443 222 2466654
No 353
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=23.99 E-value=1.3e+02 Score=23.35 Aligned_cols=47 Identities=19% Similarity=0.404 Sum_probs=34.1
Q ss_pred eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCC
Q 013389 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPA 379 (444)
Q Consensus 326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v 379 (444)
..+.+...| +....+.+.+.|+.+....-. ......||+.|++|..+
T Consensus 66 ~~~~~~v~d----~~~~~~~l~~~g~~~~~~~~~---~~~~~~~~~~DP~G~~i 112 (114)
T cd07245 66 DHIAFRVDD----LDAFRARLKAAGVPYTESDVP---GDGVRQLFVRDPDGNRI 112 (114)
T ss_pred ceEEEEeCC----HHHHHHHHHHcCCCcccccCC---CCCccEEEEECCCCCEE
Confidence 445666666 778889999999998765432 23445789999999865
No 354
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=23.40 E-value=3.6e+02 Score=20.93 Aligned_cols=61 Identities=25% Similarity=0.375 Sum_probs=40.1
Q ss_pred eEEEEEEcC---CcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389 117 TALELTGTD---RVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (444)
Q Consensus 117 t~i~v~~~D---rpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~ 189 (444)
+.|+|..+| .+|.-++|..+|++++++|..= +.|-.. -..|+..+ ...+.++..+|++.+.
T Consensus 2 ~alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K---~~nANt-it~yl~~~--------~k~~~r~~~~Le~~~p 65 (71)
T cd04910 2 FALEVFDQDMVGEVGYDLEILELLQRFKVSIIAK---DTNANT-ITHYLAGS--------LKTIKRLTEDLENRFP 65 (71)
T ss_pred eEEEEeCCCccCChhHHHHHHHHHHHcCCeEEEE---ecCCCe-EEEEEEcC--------HHHHHHHHHHHHHhCc
Confidence 345666554 5789999999999999999954 223222 24555542 2455677777776554
No 355
>PRK14646 hypothetical protein; Provisional
Probab=23.34 E-value=5.4e+02 Score=23.02 Aligned_cols=61 Identities=8% Similarity=0.075 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccc
Q 013389 338 LLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVK 399 (444)
Q Consensus 338 LL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~ 399 (444)
+..-+..++.++|+.+..++....|....=..||-...|..++-..++.+-+++.. .|.+.
T Consensus 9 i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~-~LD~~ 69 (155)
T PRK14646 9 LEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASE-EIENS 69 (155)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHH-HhCcC
Confidence 44567788899999999999999887766677774333556776788999999888 55654
No 356
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.29 E-value=5.4e+02 Score=25.13 Aligned_cols=86 Identities=17% Similarity=0.275 Sum_probs=65.2
Q ss_pred CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q 013389 256 DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCMEDR 335 (444)
Q Consensus 256 DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~DR 335 (444)
--|..+.+++..+.++|.. .+++.|.-|.. .|.+..++.+.|.+.+. ..|++.++|.
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~---------------~i~l~DT~G~~--~P~~v~~lv~~l~~~~~------~~l~~H~Hnd 202 (275)
T cd07937 146 HTLEYYVKLAKELEDMGAD---------------SICIKDMAGLL--TPYAAYELVKALKKEVG------LPIHLHTHDT 202 (275)
T ss_pred CCHHHHHHHHHHHHHcCCC---------------EEEEcCCCCCC--CHHHHHHHHHHHHHhCC------CeEEEEecCC
Confidence 3466777777777777753 46777777763 34567777677665442 5699999999
Q ss_pred CchHHHHHHHHHHCCceEEEEEeecCCce
Q 013389 336 QGLLADVTRTFRENGLNVTRAEVSTERDE 364 (444)
Q Consensus 336 pGLL~~Itr~l~e~gl~I~~A~i~T~g~~ 364 (444)
.|+=..=+-.-.+.|+++..+.+.-.|++
T Consensus 203 ~GlA~aN~laA~~aGa~~vd~sv~GlG~~ 231 (275)
T cd07937 203 SGLAVATYLAAAEAGVDIVDTAISPLSGG 231 (275)
T ss_pred CChHHHHHHHHHHhCCCEEEEecccccCC
Confidence 99988877777789999999999988887
No 357
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=23.05 E-value=9.2e+02 Score=25.58 Aligned_cols=86 Identities=14% Similarity=0.179 Sum_probs=66.0
Q ss_pred CCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEecCC
Q 013389 256 DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCMEDR 335 (444)
Q Consensus 256 DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~DR 335 (444)
-.+..+.+++..+.++|++. +++.|.-|.. .+.+..++.+.|.+.+ +..|++.++|-
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~---------------I~i~Dt~G~l--~P~~v~~lv~alk~~~------~~pi~~H~Hnt 207 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADS---------------ICIKDMAGIL--TPYVAYELVKRIKEAV------TVPLEVHTHAT 207 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCE---------------EEEcCCCCCC--CHHHHHHHHHHHHHhc------CCeEEEEecCC
Confidence 35578888999999998753 6677777753 3556777777776544 25699999999
Q ss_pred CchHHHHHHHHHHCCceEEEEEeecCCce
Q 013389 336 QGLLADVTRTFRENGLNVTRAEVSTERDE 364 (444)
Q Consensus 336 pGLL~~Itr~l~e~gl~I~~A~i~T~g~~ 364 (444)
.|+=-.=+-+-.+.|+++..+.+.-.|++
T Consensus 208 ~GlA~AN~laAieaGad~vD~sv~glg~g 236 (448)
T PRK12331 208 SGIAEMTYLKAIEAGADIIDTAISPFAGG 236 (448)
T ss_pred CCcHHHHHHHHHHcCCCEEEeeccccCCC
Confidence 99977777777799999999999987766
No 358
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=22.44 E-value=2.5e+02 Score=21.99 Aligned_cols=51 Identities=14% Similarity=0.047 Sum_probs=33.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCC
Q 013389 33 PTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKL 89 (444)
Q Consensus 33 ~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~ 89 (444)
.....+.+...| +..+.+-+.++|+.|...-.....|+- .|++.|++|+.+
T Consensus 55 ~~~~~~~~~v~d----v~~~~~~l~~~G~~~~~~~~~~~~g~~--~~~~~DPdG~~i 105 (108)
T PF12681_consen 55 GGGFHLCFEVED----VDALYERLKELGAEIVTEPRDDPWGQR--SFYFIDPDGNRI 105 (108)
T ss_dssp SSEEEEEEEESH----HHHHHHHHHHTTSEEEEEEEEETTSEE--EEEEE-TTS-EE
T ss_pred CceeEEEEEEcC----HHHHHHHHHHCCCeEeeCCEEcCCCeE--EEEEECCCCCEE
Confidence 344555555543 667777888999998875555566643 488999999753
No 359
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=22.38 E-value=7.1e+02 Score=24.02 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=67.9
Q ss_pred CCCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEE----EEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhcc
Q 013389 31 VCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKK----AYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIH 106 (444)
Q Consensus 31 ~~~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~----A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~ 106 (444)
+.+-+.+|.+.+.|+....++|-.+|+.+|+++.. ++++..-|++. |. . .+ ...+ +.++.+|....
T Consensus 92 P~GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~kG~i~--~~--~-~~--~~~d---~~~e~aieaGA 161 (238)
T TIGR01033 92 PGGVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSRKGVIE--VP--K-NE--VDEE---DLMEAAIEAGA 161 (238)
T ss_pred CCceEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeecceEEE--EC--C-CC--CCHH---HHHHHHHhCCC
Confidence 34556799999999999999999999999999853 66677777553 32 1 11 1112 22444443221
Q ss_pred -CCCCCCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEE
Q 013389 107 -YGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW 150 (444)
Q Consensus 107 -~~~~~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~ 150 (444)
.+ ....+ .+.|++ -|--|..+...|...|+.|.++.+.
T Consensus 162 edv--~~~~~--~~~v~~--~~~~~~~v~~~L~~~g~~i~~sei~ 200 (238)
T TIGR01033 162 EDI--DVDDD--EFEVYT--APEELEKVKEALEAKGFPIESAEIT 200 (238)
T ss_pred cee--eccCC--cEEEEE--CHHHHHHHHHHHHHcCCCceeeEEE
Confidence 10 01112 244444 3678999999999999999977654
No 360
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.15 E-value=2.2e+02 Score=22.47 Aligned_cols=54 Identities=9% Similarity=0.119 Sum_probs=33.0
Q ss_pred cCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389 333 EDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393 (444)
Q Consensus 333 ~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~ 393 (444)
.-..|.+..+.++|.++|+++...=. ..|.|-|.- ....++++..+.+.++|..
T Consensus 12 n~evGF~rk~L~I~E~~~is~Eh~PS------GID~~Siii-~~~~~~~~~~~~i~~~i~~ 65 (76)
T cd04911 12 NREVGFGRKLLSILEDNGISYEHMPS------GIDDISIII-RDNQLTDEKEQKILAEIKE 65 (76)
T ss_pred cchhcHHHHHHHHHHHcCCCEeeecC------CCccEEEEE-EccccchhhHHHHHHHHHH
Confidence 34589999999999999999987633 344555532 2333443233444444433
No 361
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.78 E-value=3.3e+02 Score=19.97 Aligned_cols=27 Identities=7% Similarity=-0.046 Sum_probs=22.0
Q ss_pred EEEEEcc---CCccHHHHHHHHHHhCCeeE
Q 013389 249 VVNVQCK---DRTKLLFDVVCTLTDMEYVV 275 (444)
Q Consensus 249 vv~V~~~---DRpGLL~~i~~~L~~~~~nI 275 (444)
.|.+.+. +.||+++++..+|.+.++++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4566664 77999999999999987766
No 362
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.68 E-value=2e+02 Score=22.97 Aligned_cols=52 Identities=12% Similarity=0.069 Sum_probs=34.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCC
Q 013389 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKL 89 (444)
Q Consensus 34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~ 89 (444)
+.+.+.+...|...+ ..+.+.+.++|..|...-.....|+ .|++.|++|+.+
T Consensus 59 ~~~~~~~~v~~~~~~-~~~~~~~~~~g~~v~~~~~~~~~g~---~~~~~DPdGn~i 110 (114)
T cd07261 59 GGSELAFMVDDGAAV-DALYAEWQAKGVKIIQEPTEMDFGY---TFVALDPDGHRL 110 (114)
T ss_pred CceEEEEEcCCHHHH-HHHHHHHHHCCCeEecCccccCCcc---EEEEECCCCCEE
Confidence 445677777665555 5566667789999876443333343 478999999864
No 363
>COG1438 ArgR Arginine repressor [Transcription]
Probab=21.61 E-value=5.9e+02 Score=22.84 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=66.9
Q ss_pred CCccHHHHHHHHHHhCCceEEEEEEEec-------------CCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCC
Q 013389 44 RRHGILLEAVQVLTDLNLLIKKAYISSD-------------GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS 110 (444)
Q Consensus 44 dr~Gll~~i~~vL~~~~l~I~~A~i~t~-------------~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~ 110 (444)
++-+-=.+++..|.+.|+.|.+|.+|.| |.|. +....+......+....++...+-..
T Consensus 18 ~~i~TQ~Elv~~L~~~Gi~vTQaTvSRDlkelglvKv~~~~g~~~----Y~l~~~~~~~~~~~~~~~~~~~v~~v----- 88 (150)
T COG1438 18 EKISTQEELVELLQEEGIEVTQATVSRDLKELGLVKVRNEKGTYV----YSLPAELGVPPTSKLKRYLKDLVLSI----- 88 (150)
T ss_pred CCCCCHHHHHHHHHHcCCeEehHHHHHHHHHcCCEEecCCCCcEE----EEeCCccCCCchhhHHHHHHHHheee-----
Confidence 3445557899999999999999988742 2222 33333333222233334455544322
Q ss_pred CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCe-EEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCS-VVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 111 ~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~-I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
.+..-.|+-+--||.-.-|+++|..++.. |. -|--| .|+.+|... +++..+.+.+.|.+
T Consensus 89 ----d~~~~~ivlkT~PG~A~~ia~~lD~~~~~eIl----GTIaG--dDTilVi~r-------~~~~a~~l~~~l~~ 148 (150)
T COG1438 89 ----DRNGNLIVLKTSPGAAQLIARLLDSLAKDEIL----GTIAG--DDTILVICR-------SEETAKELYEELLN 148 (150)
T ss_pred ----ccCCcEEEEEeCCchHHHHHHHHHhcCchhhh----eeeeC--CCeEEEEec-------CchhHHHHHHHHHh
Confidence 12223344456799999999999999988 22 12111 255666652 23445666666654
No 364
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=21.55 E-value=1.9e+02 Score=30.02 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=31.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEE
Q 013389 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW 150 (444)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~ 150 (444)
.|+|.+.||-||..++-..|...++|+...+|.
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid 34 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID 34 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeec
Confidence 588999999999999999999999999998884
No 365
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=20.25 E-value=3.7e+02 Score=21.09 Aligned_cols=35 Identities=29% Similarity=0.288 Sum_probs=28.0
Q ss_pred eEEEEE-EcCCcchHHHHHHHHHHCCCeEEEEEEEe
Q 013389 117 TALELT-GTDRVGLLSEVFAVLADLQCSVVEAKVWT 151 (444)
Q Consensus 117 t~i~v~-~~DrpGLl~~i~~vL~~~~~~I~~A~i~T 151 (444)
+.|.|. +...+||=.+++..|...|+.+...--+.
T Consensus 4 v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~~~~n~~ 39 (90)
T PF13399_consen 4 VRVEVLNGTGVSGLAARVADALRNRGFTVVEVGNAP 39 (90)
T ss_pred eEEEEEECcCCcCHHHHHHHHHHHCCCceeecCCCC
Confidence 445555 88899999999999999999997654443
No 366
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=20.04 E-value=6.8e+02 Score=29.49 Aligned_cols=79 Identities=10% Similarity=0.022 Sum_probs=54.0
Q ss_pred CCEEEEEecC-CCCeEEEEE---EccCCccHHHHHHHHHHhCCeeEEEEEEEec-CCEEEEEEEEEeCCCCCCCCHHHHH
Q 013389 234 YPVVTVQNWA-DRSYSVVNV---QCKDRTKLLFDVVCTLTDMEYVVFHATINTA-GERAYLEFYIRHIDGTPISSEPERQ 308 (444)
Q Consensus 234 ~~~V~v~~~~-~~~~tvv~V---~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~-g~~a~d~F~V~~~~g~~l~~~~~~~ 308 (444)
.|.+.+...+ ......+.+ ..+...|+|..++..+..+|+.+..+-+.+. .+-..-+|||+...+....+.+.++
T Consensus 216 g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~~~~~~~~~~ 295 (1002)
T PTZ00324 216 GPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTADDNPDLSIED 295 (1002)
T ss_pred CCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCCCcccccHHH
Confidence 4666665544 223334444 5677889999999999999999999999886 5667779999976554222222344
Q ss_pred HHHH
Q 013389 309 RVIQ 312 (444)
Q Consensus 309 ~l~~ 312 (444)
++++
T Consensus 296 ~~~~ 299 (1002)
T PTZ00324 296 RASL 299 (1002)
T ss_pred HHHh
Confidence 4444
Done!