Query 013389
Match_columns 444
No_of_seqs 382 out of 2116
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 09:40:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nyi_A Unknown protein; protei 99.8 1.6E-18 5.5E-23 160.8 14.1 143 246-393 4-161 (195)
2 1u8s_A Glycine cleavage system 99.7 1.6E-16 5.4E-21 146.8 17.2 139 247-393 6-164 (192)
3 2nyi_A Unknown protein; protei 99.7 2.9E-16 1E-20 145.6 17.0 148 34-189 4-164 (195)
4 1u8s_A Glycine cleavage system 99.6 6.3E-15 2.2E-19 136.0 16.7 146 34-189 5-167 (192)
5 3p96_A Phosphoserine phosphata 98.9 5E-08 1.7E-12 99.8 18.4 143 34-189 11-167 (415)
6 3p96_A Phosphoserine phosphata 98.8 9.7E-08 3.3E-12 97.6 18.6 122 246-372 11-149 (415)
7 2f06_A Conserved hypothetical 98.6 1.1E-06 3.9E-11 76.5 16.1 113 35-162 6-118 (144)
8 2f06_A Conserved hypothetical 98.4 5.7E-06 1.9E-10 72.0 14.0 112 248-371 7-118 (144)
9 1zpv_A ACT domain protein; str 98.2 1.1E-05 3.6E-10 64.4 9.6 67 115-188 4-70 (91)
10 1zpv_A ACT domain protein; str 98.1 2.6E-05 8.8E-10 62.1 10.7 65 246-316 4-68 (91)
11 2ko1_A CTR148A, GTP pyrophosph 97.9 5E-05 1.7E-09 59.7 8.8 63 116-185 5-67 (88)
12 3l76_A Aspartokinase; alloster 97.9 0.015 5E-07 62.2 29.9 262 36-357 271-562 (600)
13 2ko1_A CTR148A, GTP pyrophosph 97.8 9.8E-05 3.4E-09 58.0 9.3 64 325-393 5-68 (88)
14 2re1_A Aspartokinase, alpha an 97.7 0.00022 7.4E-09 63.7 11.0 109 33-147 23-137 (167)
15 2re1_A Aspartokinase, alpha an 97.5 0.00088 3E-08 59.7 12.4 130 245-391 23-164 (167)
16 3o1l_A Formyltetrahydrofolate 97.4 0.0018 6.1E-08 63.4 13.7 49 34-82 21-71 (302)
17 3obi_A Formyltetrahydrofolate 97.4 0.0039 1.3E-07 60.5 15.6 112 35-151 6-124 (288)
18 2dtj_A Aspartokinase; protein- 97.4 0.00098 3.3E-08 60.1 10.4 109 33-147 13-129 (178)
19 2dt9_A Aspartokinase; protein- 97.3 0.0013 4.6E-08 58.4 10.3 105 33-146 14-128 (167)
20 3n0v_A Formyltetrahydrofolate 97.3 0.0051 1.8E-07 59.7 15.1 101 247-353 8-118 (286)
21 3n0v_A Formyltetrahydrofolate 97.3 0.0045 1.5E-07 60.1 14.6 112 34-151 7-125 (286)
22 3obi_A Formyltetrahydrofolate 97.3 0.0068 2.3E-07 58.9 15.8 107 247-358 6-122 (288)
23 3nrb_A Formyltetrahydrofolate 97.3 0.0037 1.3E-07 60.7 13.8 114 34-151 6-123 (287)
24 3o1l_A Formyltetrahydrofolate 97.2 0.0044 1.5E-07 60.5 14.2 101 247-352 22-132 (302)
25 3lou_A Formyltetrahydrofolate 97.2 0.0072 2.5E-07 58.8 14.8 104 247-354 10-124 (292)
26 3lou_A Formyltetrahydrofolate 97.1 0.0064 2.2E-07 59.1 13.9 49 34-82 9-59 (292)
27 2f1f_A Acetolactate synthase i 97.1 0.0017 6E-08 57.8 8.8 64 117-188 4-69 (164)
28 3nrb_A Formyltetrahydrofolate 97.0 0.012 3.9E-07 57.2 14.6 102 246-354 6-117 (287)
29 2dtj_A Aspartokinase; protein- 97.0 0.007 2.4E-07 54.4 12.1 132 245-393 13-158 (178)
30 2f1f_A Acetolactate synthase i 97.0 0.0017 5.8E-08 57.9 7.5 68 326-400 4-73 (164)
31 2dt9_A Aspartokinase; protein- 96.9 0.0039 1.3E-07 55.4 9.8 135 244-392 13-157 (167)
32 2pc6_A Probable acetolactate s 96.9 0.0033 1.1E-07 56.0 8.6 64 117-188 5-70 (165)
33 3l76_A Aspartokinase; alloster 96.8 0.053 1.8E-06 57.9 18.9 209 33-318 353-588 (600)
34 2pc6_A Probable acetolactate s 96.8 0.0039 1.3E-07 55.5 8.4 68 326-400 5-74 (165)
35 2jhe_A Transcription regulator 96.7 0.0061 2.1E-07 53.8 9.3 59 327-393 2-60 (190)
36 2fgc_A Acetolactate synthase, 96.6 0.0074 2.5E-07 54.9 8.9 63 325-393 29-93 (193)
37 3s1t_A Aspartokinase; ACT doma 96.6 0.009 3.1E-07 53.9 9.5 110 33-148 14-131 (181)
38 2fgc_A Acetolactate synthase, 96.3 0.012 4.2E-07 53.4 8.4 66 116-189 29-96 (193)
39 3ab4_A Aspartokinase; aspartat 96.1 0.053 1.8E-06 55.3 13.3 107 34-146 263-377 (421)
40 2jhe_A Transcription regulator 95.9 0.03 1E-06 49.2 9.1 59 118-186 2-60 (190)
41 1y7p_A Hypothetical protein AF 95.7 0.013 4.5E-07 54.1 6.0 38 325-362 4-41 (223)
42 3s1t_A Aspartokinase; ACT doma 95.7 0.098 3.3E-06 47.0 11.5 134 245-392 14-158 (181)
43 4go7_X Aspartokinase; transfer 95.5 0.096 3.3E-06 48.0 10.9 110 33-148 33-150 (200)
44 3ab4_A Aspartokinase; aspartat 95.2 0.18 6.3E-06 51.2 13.0 134 245-392 262-406 (421)
45 4go7_X Aspartokinase; transfer 95.0 0.11 3.7E-06 47.6 9.6 136 244-393 32-178 (200)
46 1y7p_A Hypothetical protein AF 94.9 0.032 1.1E-06 51.5 5.8 38 116-153 4-41 (223)
47 3c1m_A Probable aspartokinase; 94.5 0.1 3.6E-06 54.0 9.0 105 34-145 317-436 (473)
48 3c1m_A Probable aspartokinase; 93.5 0.28 9.7E-06 50.7 10.0 132 245-393 316-469 (473)
49 2qmx_A Prephenate dehydratase; 93.4 0.18 6.2E-06 48.6 7.9 117 269-400 155-274 (283)
50 1sc6_A PGDH, D-3-phosphoglycer 92.7 0.21 7.1E-06 50.6 7.5 47 325-371 331-377 (404)
51 2qmw_A PDT, prephenate dehydra 92.0 0.36 1.2E-05 46.1 7.7 104 269-398 152-260 (267)
52 3luy_A Probable chorismate mut 92.0 0.73 2.5E-05 45.3 10.0 118 269-400 161-282 (329)
53 3mwb_A Prephenate dehydratase; 91.9 0.32 1.1E-05 47.6 7.3 114 269-403 162-279 (313)
54 1ygy_A PGDH, D-3-phosphoglycer 91.4 0.77 2.6E-05 48.0 10.2 63 323-389 452-516 (529)
55 3tvi_A Aspartokinase; structur 91.4 0.61 2.1E-05 47.8 9.1 106 35-148 298-409 (446)
56 1sc6_A PGDH, D-3-phosphoglycer 90.4 0.76 2.6E-05 46.5 8.7 50 115-164 330-379 (404)
57 1ygy_A PGDH, D-3-phosphoglycer 89.8 1.2 4E-05 46.7 9.8 62 114-181 452-515 (529)
58 3k5p_A D-3-phosphoglycerate de 88.8 0.73 2.5E-05 46.8 7.1 51 32-85 340-390 (416)
59 3tvi_A Aspartokinase; structur 87.7 1.9 6.4E-05 44.2 9.4 105 245-358 296-410 (446)
60 1phz_A Protein (phenylalanine 85.0 0.94 3.2E-05 45.9 5.4 67 325-394 34-101 (429)
61 2cdq_A Aspartokinase; aspartat 84.2 4.3 0.00015 42.2 10.2 108 34-147 340-453 (510)
62 3mah_A Aspartokinase; aspartat 82.9 1.1 3.8E-05 38.8 4.3 100 33-148 16-121 (157)
63 3k5p_A D-3-phosphoglycerate de 82.0 4.1 0.00014 41.3 8.7 50 114-163 341-390 (416)
64 3mtj_A Homoserine dehydrogenas 78.8 1.7 6E-05 44.4 4.7 65 325-393 359-425 (444)
65 3mtj_A Homoserine dehydrogenas 78.4 4.3 0.00015 41.5 7.5 51 115-165 358-410 (444)
66 2cdq_A Aspartokinase; aspartat 78.2 4 0.00014 42.5 7.3 136 245-392 339-483 (510)
67 2qmx_A Prephenate dehydratase; 76.5 6 0.0002 37.9 7.5 49 116-164 200-249 (283)
68 3mah_A Aspartokinase; aspartat 72.8 2.5 8.6E-05 36.5 3.5 126 246-392 17-150 (157)
69 3luy_A Probable chorismate mut 70.8 27 0.00093 34.0 10.8 51 117-169 207-260 (329)
70 3mwb_A Prephenate dehydratase; 68.2 10 0.00035 36.8 7.0 50 115-164 200-251 (313)
71 1ib8_A Conserved protein SP14. 65.0 31 0.001 30.1 8.9 92 260-360 14-111 (164)
72 2qmw_A PDT, prephenate dehydra 62.7 22 0.00076 33.6 8.1 49 35-84 186-239 (267)
73 3g12_A Putative lactoylglutath 36.6 70 0.0024 25.5 6.2 48 325-379 67-115 (128)
74 3g12_A Putative lactoylglutath 36.0 1.1E+02 0.0036 24.3 7.2 49 34-89 66-115 (128)
75 1tdj_A Biosynthetic threonine 35.5 2E+02 0.0067 29.7 10.6 121 36-164 339-483 (514)
76 1rwu_A Hypothetical UPF0250 pr 34.6 1.7E+02 0.0059 23.5 8.0 66 33-105 34-102 (109)
77 1phz_A Protein (phenylalanine 34.0 54 0.0018 33.1 5.8 69 114-187 32-101 (429)
78 3r6a_A Uncharacterized protein 33.4 92 0.0032 25.5 6.5 47 327-380 68-114 (144)
79 2j0w_A Lysine-sensitive aspart 32.0 24 0.00081 35.9 2.9 104 34-145 307-416 (449)
80 3kol_A Oxidoreductase, glyoxal 25.8 88 0.003 25.0 5.0 38 339-379 109-146 (156)
81 3rri_A Glyoxalase/bleomycin re 24.4 1E+02 0.0035 24.1 5.1 51 328-379 71-123 (135)
82 1zhv_A Hypothetical protein AT 21.5 52 0.0018 27.7 2.6 43 117-164 63-108 (134)
83 1rwu_A Hypothetical UPF0250 pr 21.2 3.2E+02 0.011 21.9 7.8 62 246-314 35-99 (109)
84 3ced_A Methionine import ATP-b 20.5 3E+02 0.01 21.2 8.0 86 308-398 4-92 (98)
85 3zw5_A Glyoxalase domain-conta 20.4 76 0.0026 25.7 3.5 42 338-379 100-142 (147)
No 1
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=99.78 E-value=1.6e-18 Score=160.81 Aligned_cols=143 Identities=16% Similarity=0.171 Sum_probs=114.5
Q ss_pred CeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc-----
Q 013389 246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR----- 320 (444)
Q Consensus 246 ~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r----- 320 (444)
..++|+|+|+|||||+++|+++|+++|+||.+|++++..+.+.-.|.+.... . ..+..++.|++.|...+.+
T Consensus 4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~-~--~~~~~~~~l~~~L~~~~~~~~~~~ 80 (195)
T 2nyi_A 4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNA-K--DGKLIQSALESALPGFQISTRRAS 80 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS-S--SSHHHHHHHHHHSTTCEEEEEECC
T ss_pred eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecC-c--cchhHHHHHHHHHHHHHHhcCCeE
Confidence 4579999999999999999999999999999999999877665578886442 1 2233577788877654321
Q ss_pred --------CCCCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC--ceEEEEEEEEcCCCCCCChHHHHHHHHH
Q 013389 321 --------RASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER--DEALNIFYVTDEMGNPADPKIIEAVRQK 390 (444)
Q Consensus 321 --------r~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g--~~a~d~FyV~d~~g~~v~~~~~~~lr~~ 390 (444)
.....++|+|.|+|||||+++||++|+++|+||..++..|.+ +++.+.||++...+.| ++.. +.|+++
T Consensus 81 ~~~~~~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-~~~~-~~l~~~ 158 (195)
T 2nyi_A 81 SVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP-FPLY-QEVVTA 158 (195)
T ss_dssp CC----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-GGGH-HHHHHH
T ss_pred EEEeCCcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC-CCcc-HHHHHH
Confidence 011258999999999999999999999999999999999998 7789999998766555 2345 778887
Q ss_pred Hhh
Q 013389 391 IGL 393 (444)
Q Consensus 391 l~~ 393 (444)
|..
T Consensus 159 l~~ 161 (195)
T 2nyi_A 159 LSR 161 (195)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 2
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=99.72 E-value=1.6e-16 Score=146.78 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=109.2
Q ss_pred eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc------
Q 013389 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR------ 320 (444)
Q Consensus 247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r------ 320 (444)
..+|+|.|+||||++++|+++|+++|+||.++++++.++.+.-.|.+..+ +...++|++.|.+...+
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~~~~~~~~~~~ 78 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-------PSNITRVETTLPLLGQQHDLITM 78 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-------HHHHHHHHHHHHHHHHHHTCEEE
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC-------CCCHHHHHHHHHHHHHhcCCEEE
Confidence 57899999999999999999999999999999999988877768888643 13577888887654310
Q ss_pred --C---C-----CCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCc----eEEEEEEEEcCCCCCCChHHHHH
Q 013389 321 --R---A-----SEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERD----EALNIFYVTDEMGNPADPKIIEA 386 (444)
Q Consensus 321 --r---~-----~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~----~a~d~FyV~d~~g~~v~~~~~~~ 386 (444)
+ . ...++|+|.++||||+|++|+++|+++|+||..++..|.++ ++.+.||++...+.| ++...+.
T Consensus 79 ~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~-~~~~~~~ 157 (192)
T 1u8s_A 79 MKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-SGCNLMQ 157 (192)
T ss_dssp EEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-TTSCHHH
T ss_pred EEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC-CCCCHHH
Confidence 1 1 12479999999999999999999999999999999999985 689999998765444 2234567
Q ss_pred HHHHHhh
Q 013389 387 VRQKIGL 393 (444)
Q Consensus 387 lr~~l~~ 393 (444)
|+++|..
T Consensus 158 l~~~l~~ 164 (192)
T 1u8s_A 158 LQEEFDA 164 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777765
No 3
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=99.70 E-value=2.9e-16 Score=145.55 Aligned_cols=148 Identities=20% Similarity=0.192 Sum_probs=111.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccC-C---
Q 013389 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY-G--- 108 (444)
Q Consensus 34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~-~--- 108 (444)
...+|+|.|+|||||++.++++|+++||||.+|++++ .++++| .|.|..+.. ......+.|+++|..... +
T Consensus 4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~~~~~---~~~~~~~~l~~~L~~~~~~~~~~ 79 (195)
T 2nyi_A 4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLNAK---DGKLIQSALESALPGFQISTRRA 79 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEESSS---SSHHHHHHHHHHSTTCEEEEEEC
T ss_pred eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEEecCc---cchhHHHHHHHHHHHHHHhcCCe
Confidence 4579999999999999999999999999999999986 555555 788875421 222356778888864421 0
Q ss_pred ---CC---CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC--CeEEEEEEEEcCCCCCCCCChHHHHHH
Q 013389 109 ---RS---NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN--GRIASLIYVKDCNSGSPIEDSQQIDRI 180 (444)
Q Consensus 109 ---~~---~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~--~~~~dvf~V~d~~~g~~i~~~~r~~~i 180 (444)
++ ......+.|+|.|+|||||+++|+++|+++|+||.+++..|.+ .+..+.|++... .+.+ ++.. +.|
T Consensus 80 ~~~~~~~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~-~~~~--~~~~-~~l 155 (195)
T 2nyi_A 80 SSVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSR-VAFP--FPLY-QEV 155 (195)
T ss_dssp CCC----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEE-EEEE--GGGH-HHH
T ss_pred EEEEeCCcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEE-EEcC--CCcc-HHH
Confidence 10 1123568999999999999999999999999999999999976 556688887763 2322 2334 778
Q ss_pred HHHHHHHhc
Q 013389 181 EARLRNVLK 189 (444)
Q Consensus 181 ~~~L~~vL~ 189 (444)
++.|..+..
T Consensus 156 ~~~l~~~a~ 164 (195)
T 2nyi_A 156 VTALSRVEE 164 (195)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888876543
No 4
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=99.63 E-value=6.3e-15 Score=135.98 Aligned_cols=146 Identities=14% Similarity=0.137 Sum_probs=105.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhcc---CC--
Q 013389 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIH---YG-- 108 (444)
Q Consensus 34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~---~~-- 108 (444)
...+|+|.|+|||||+++++++|+++|+||.++++++..|.+.-.|.|..+. ...+.|++.|.... ..
T Consensus 5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-------~~~~~l~~~L~~~~~~~~~~~ 77 (192)
T 1u8s_A 5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-------SNITRVETTLPLLGQQHDLIT 77 (192)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-------HHHHHHHHHHHHHHHHHTCEE
T ss_pred cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-------CCHHHHHHHHHHHHHhcCCEE
Confidence 3578999999999999999999999999999999987666555578886531 23344555443221 11
Q ss_pred ------C-C-CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCC----eEEEEEEEEcCCCCCCCCChHH
Q 013389 109 ------R-S-NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG----RIASLIYVKDCNSGSPIEDSQQ 176 (444)
Q Consensus 109 ------~-~-~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~----~~~dvf~V~d~~~g~~i~~~~r 176 (444)
+ + ......+.|+|.++||||++++|+.+|+++|+||.+++..|.+. +..+.|++... .+.+ ++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~-~~~~--~~~~ 154 (192)
T 1u8s_A 78 MMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAIS-ARVD--SGCN 154 (192)
T ss_dssp EEEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEE-EEEC--TTSC
T ss_pred EEEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEE-EeCC--CCCC
Confidence 1 1 23346789999999999999999999999999999999999763 56778877663 2222 1223
Q ss_pred HHHHHHHHHHHhc
Q 013389 177 IDRIEARLRNVLK 189 (444)
Q Consensus 177 ~~~i~~~L~~vL~ 189 (444)
.+.|++.|..+..
T Consensus 155 ~~~l~~~l~~~~~ 167 (192)
T 1u8s_A 155 LMQLQEEFDALCT 167 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5678888876544
No 5
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=98.89 E-value=5e-08 Score=99.80 Aligned_cols=143 Identities=12% Similarity=0.008 Sum_probs=99.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhcc---CC--
Q 013389 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIH---YG-- 108 (444)
Q Consensus 34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~---~~-- 108 (444)
...+|+|.|+|||||++.++++|+++|+||.+++.+..+|+|.-...+.-+... . ..+.|+++|.... ..
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-~----~~~~l~~~l~~~~~~~~~~~ 85 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-A----DGPALRHDVEAAIRKVGLDV 85 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-H----TSHHHHHHHHHHHHHTTCEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-C----CHHHHHHHHHHHHHHcCeEE
Confidence 457899999999999999999999999999999999888877655555432110 0 1134444443321 11
Q ss_pred ---C----C-CCCCCceEEEEEEcC-CcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHH
Q 013389 109 ---R----S-NSFNGLTALELTGTD-RVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDR 179 (444)
Q Consensus 109 ---~----~-~~~~~~t~i~v~~~D-rpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~ 179 (444)
+ + .....+..+++.+.| +||++++|+.+|+++|+||......+......-.|+|.-+ + .+ ...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~----~-~~---~~~ 157 (415)
T 3p96_A 86 SIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVP----P-GA---DEA 157 (415)
T ss_dssp EEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECC----T-TC---HHH
T ss_pred EEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCC----C-CC---HHH
Confidence 1 1 233568899999999 9999999999999999999988877743344334776442 1 12 245
Q ss_pred HHHHHHHHhc
Q 013389 180 IEARLRNVLK 189 (444)
Q Consensus 180 i~~~L~~vL~ 189 (444)
++++|.+.+.
T Consensus 158 l~~~l~~l~~ 167 (415)
T 3p96_A 158 LRTALNRVSS 167 (415)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 6666665543
No 6
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=98.84 E-value=9.7e-08 Score=97.62 Aligned_cols=122 Identities=13% Similarity=0.074 Sum_probs=91.4
Q ss_pred CeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH---hc---
Q 013389 246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA---VG--- 319 (444)
Q Consensus 246 ~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a---l~--- 319 (444)
...+|+|.|+||||+.+.|++.|+++|+||.+++-++.++++.-...+.-+++. ...+.|++.|... +.
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~ 85 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-----ADGPALRHDVEAAIRKVGLDV 85 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-----HTSHHHHHHHHHHHHHTTCEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-----CCHHHHHHHHHHHHHHcCeEE
Confidence 457899999999999999999999999999999999888876655555422110 0225666666542 21
Q ss_pred ---c-----CC--CCceEEEEEecC-CCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEE
Q 013389 320 ---R-----RA--SEGVRLELCMED-RQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVT 372 (444)
Q Consensus 320 ---r-----r~--~~~~~lev~~~D-RpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~ 372 (444)
. +. ...+.+++.+.| ++|++.+|+.+|.++|+||..+..-+......=.|++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~ 149 (415)
T 3p96_A 86 SIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVS 149 (415)
T ss_dssp EEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEE
T ss_pred EEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEee
Confidence 1 11 225899999999 99999999999999999999998877444343337774
No 7
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=98.63 E-value=1.1e-06 Score=76.52 Aligned_cols=113 Identities=17% Similarity=0.193 Sum_probs=76.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCCCCCC
Q 013389 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFN 114 (444)
Q Consensus 35 ~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~~~~~ 114 (444)
...++|..+|+||.++++++.|++.|+||..-.+.......+-.|.+.+ .+...+.|++ ... ...
T Consensus 6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~d-------~~~a~~~L~~----~G~----~v~ 70 (144)
T 2f06_A 6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSD-------PDKAYKALKD----NHF----AVN 70 (144)
T ss_dssp EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESC-------HHHHHHHHHH----TTC----CEE
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeCC-------HHHHHHHHHH----cCC----eEe
Confidence 4578999999999999999999999999998877532221122344322 1333333332 211 111
Q ss_pred CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEE
Q 013389 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYV 162 (444)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V 162 (444)
....+.+..+|+||.+++++.+|+++|+||.....+..+++...+|.+
T Consensus 71 ~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~ 118 (144)
T 2f06_A 71 ITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP 118 (144)
T ss_dssp EEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred eeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence 224677788999999999999999999999877665335566555544
No 8
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=98.39 E-value=5.7e-06 Score=72.02 Aligned_cols=112 Identities=11% Similarity=0.067 Sum_probs=74.9
Q ss_pred EEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCCCCceE
Q 013389 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVR 327 (444)
Q Consensus 248 tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~~~~~~ 327 (444)
..++|..+|+||.++++++.|++.|+||..-.+....+...-.|.+ . + .++.++.|++. .-.......
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~--~------d---~~~a~~~L~~~-G~~v~~~sv 74 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV--S------D---PDKAYKALKDN-HFAVNITDV 74 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE--S------C---HHHHHHHHHHT-TCCEEEEEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEe--C------C---HHHHHHHHHHc-CCeEeeeeE
Confidence 4678889999999999999999999999987765433322212322 1 2 23444445432 111111235
Q ss_pred EEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEE
Q 013389 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYV 371 (444)
Q Consensus 328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV 371 (444)
+-+..+|+||.+++++++|+++|+||........+.++.-+|-+
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~ 118 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP 118 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence 77778899999999999999999999876665334455544433
No 9
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=98.16 E-value=1.1e-05 Score=64.39 Aligned_cols=67 Identities=12% Similarity=0.166 Sum_probs=52.2
Q ss_pred CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (444)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL 188 (444)
..+.|.|.++||||++++|+++|+++|+||.+....+..+.+...+.+.-+ + ...++.|.+.|.++-
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~-----~~~l~~l~~~L~~~~ 70 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--E-----KQDFTYLRNEFEAFG 70 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--S-----CCCHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--C-----CCCHHHHHHHHHHHH
Confidence 357899999999999999999999999999999998877766666666442 1 123466777777643
No 10
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=98.10 E-value=2.6e-05 Score=62.11 Aligned_cols=65 Identities=11% Similarity=0.101 Sum_probs=51.1
Q ss_pred CeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 013389 246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEA 316 (444)
Q Consensus 246 ~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~ 316 (444)
....|+|.|+||||++++|+.+|+++|+||.+....+..+.+.-.+.+.-++. ...+.|.+.|.+
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~------~~l~~l~~~L~~ 68 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEK------QDFTYLRNEFEA 68 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSC------CCHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCC------CCHHHHHHHHHH
Confidence 34689999999999999999999999999999999887777766666643321 135667777654
No 11
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=97.89 E-value=5e-05 Score=59.72 Aligned_cols=63 Identities=13% Similarity=0.352 Sum_probs=47.1
Q ss_pred ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHH
Q 013389 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLR 185 (444)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~ 185 (444)
.+.|.|.+.||||+|++|+++|++.|+||.+..+.+.++.+...|.+.-. +++.++.+.+.|.
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~L~ 67 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-------NTDKLTTLMDKLR 67 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-------SHHHHHHHHHHHT
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence 56889999999999999999999999999999998866644444444432 3445555555554
No 12
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=97.86 E-value=0.015 Score=62.24 Aligned_cols=262 Identities=13% Similarity=0.131 Sum_probs=154.5
Q ss_pred EEEEEEe-CCCccHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhcc-------
Q 013389 36 TLVKVDS-ARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIH------- 106 (444)
Q Consensus 36 t~V~v~~-~dr~Gll~~i~~vL~~~~l~I~~A~i~t-~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~------- 106 (444)
+.|++.. ++++|.++++.+.|++.|++|.-...+. .+|..-..|.|...+- ++..+.+++ +....
T Consensus 271 ~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~-----~~a~~~l~~-~~~el~~~~~~~ 344 (600)
T 3l76_A 271 AKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLL-----NTAEAVTSA-IAPALRSYPEAD 344 (600)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGH-----HHHHHHHHH-HGGGGSSSTTCS
T ss_pred EEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHH-----HHHHHHHHH-HHHHhhcccccc
Confidence 3444443 6899999999999999999995443332 4554444566654311 112222332 22111
Q ss_pred CCCC-CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHH
Q 013389 107 YGRS-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEA 182 (444)
Q Consensus 107 ~~~~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~ 182 (444)
.+.. ....+...|.|.|. .+||..+++..+|++.++||.... |.. . --.|.|... + .++.-+
T Consensus 345 ~~~~v~~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tSe-~-~Is~vI~~~-------d---~~~Av~ 410 (600)
T 3l76_A 345 QEAEIIVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TSE-V-KVSCVIDQR-------D---ADRAIA 410 (600)
T ss_dssp SSSEEEEECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--ECS-S-EEEEEEEGG-------G---HHHHHH
T ss_pred CcceeEecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cCC-C-EEEEEEcHH-------H---HHHHHH
Confidence 0000 12356778889887 699999999999999999998554 332 2 223444431 1 234455
Q ss_pred HHHHHhcCCCcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeEEEEEE-ccCCccHH
Q 013389 183 RLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQ-CKDRTKLL 261 (444)
Q Consensus 183 ~L~~vL~~~~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~tvv~V~-~~DRpGLL 261 (444)
.|.+.+..+.... .+ + ... .+ ...-+-|..+ ++.+.|+|. .+|+||+.
T Consensus 411 aLh~~f~~~~t~~------------~~-~-~~~------~~-------~~~v~Gia~~----~~~a~i~i~~~~~~~g~~ 459 (600)
T 3l76_A 411 ALSNAFGVTLSPP------------KN-Q-TDT------SH-------LPAVRGVALD----QDQAQIAIRHVPDRPGMA 459 (600)
T ss_dssp HHHHHTTCCBCCC------------CC-C-CC----------------CCSCCEEEEE----CSEEEEEEEEEESSTTHH
T ss_pred HHHHhhcccCCCc------------cc-c-ccc------cc-------cCceEEEEee----CCEEEEEEecCCCCccHH
Confidence 6776665421100 00 0 000 01 0011234443 456777775 58999999
Q ss_pred HHHHHHHHhCCeeEEEEEEEec----CC--EEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC-------CCCceEE
Q 013389 262 FDVVCTLTDMEYVVFHATINTA----GE--RAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR-------ASEGVRL 328 (444)
Q Consensus 262 ~~i~~~L~~~~~nI~~A~I~T~----g~--~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr-------~~~~~~l 328 (444)
++|...|++.|+||---..+.. .+ ...-.|.|... ..++..+.|++....- .+.-.+|
T Consensus 460 ~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~---------d~~~a~~~l~~~~~~~~~~~v~~~~~~akV 530 (600)
T 3l76_A 460 AQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEG---------DSSQAEAILQPLIKDWLDAAIVVNKAIAKV 530 (600)
T ss_dssp HHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHH---------HHHHHHHHHHHHTTTSTTCEEEEECCEEEE
T ss_pred HHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHH---------HHHHHHHHHHHHHHhcCCceEEEeCCeEEE
Confidence 9999999999999943322221 13 34445666532 3444444444421110 1123577
Q ss_pred EEEe---cCCCchHHHHHHHHHHCCceEEEEE
Q 013389 329 ELCM---EDRQGLLADVTRTFRENGLNVTRAE 357 (444)
Q Consensus 329 ev~~---~DRpGLL~~Itr~l~e~gl~I~~A~ 357 (444)
.|.+ ..+||+.+.+.++|.+.|+||....
T Consensus 531 SiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis 562 (600)
T 3l76_A 531 SIVGSGMIGHPGVAAHFFAALAQENINIEMIA 562 (600)
T ss_dssp EEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred EEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence 8876 4899999999999999999998766
No 13
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=97.82 E-value=9.8e-05 Score=58.01 Aligned_cols=64 Identities=9% Similarity=0.138 Sum_probs=50.6
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~ 393 (444)
.+.|.|.+.||||+|++|+++|++.|+||..+.+.+.++.+...|.+.-. +...++++.++|.+
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~L~~ 68 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-----NTDKLTTLMDKLRK 68 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-----SHHHHHHHHHHHTT
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999998876655555554322 23567788888776
No 14
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=97.72 E-value=0.00022 Score=63.70 Aligned_cols=109 Identities=12% Similarity=0.161 Sum_probs=74.2
Q ss_pred CCeEEEEEEe-CCCccHHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCC
Q 013389 33 PTATLVKVDS-ARRHGILLEAVQVLTDLNLLIKKAYIS-SDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS 110 (444)
Q Consensus 33 ~~~t~V~v~~-~dr~Gll~~i~~vL~~~~l~I~~A~i~-t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~ 110 (444)
.+.+.|+|.+ +|+||.++++.++|++.|+||.-...+ +.+|..--.|.|...+. ++..+.+++ +.....+..
T Consensus 23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~-----~~a~~~l~~-~~~~l~~~~ 96 (167)
T 2re1_A 23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDY-----KQTLEILSE-RQDSIGAAS 96 (167)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGH-----HHHHHHHHH-SSTTTTCSE
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHH-----HHHHHHHHH-HHHHcCCce
Confidence 4678889985 999999999999999999999876654 23453334566653211 223333443 211111011
Q ss_pred -CCCCCceEEEEEEcC---CcchHHHHHHHHHHCCCeEEEE
Q 013389 111 -NSFNGLTALELTGTD---RVGLLSEVFAVLADLQCSVVEA 147 (444)
Q Consensus 111 -~~~~~~t~i~v~~~D---rpGLl~~i~~vL~~~~~~I~~A 147 (444)
....+...+.|.|.+ +||.++++..+|++.|+||...
T Consensus 97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i 137 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI 137 (167)
T ss_dssp EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence 123457889999987 9999999999999999999973
No 15
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=97.54 E-value=0.00088 Score=59.70 Aligned_cols=130 Identities=14% Similarity=0.201 Sum_probs=83.7
Q ss_pred CCeEEEEEEc-cCCccHHHHHHHHHHhCCeeEEEEEEEec-CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh---c
Q 013389 245 RSYSVVNVQC-KDRTKLLFDVVCTLTDMEYVVFHATINTA-GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV---G 319 (444)
Q Consensus 245 ~~~tvv~V~~-~DRpGLL~~i~~~L~~~~~nI~~A~I~T~-g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al---~ 319 (444)
++.+.|+|.+ +|+||.++++..+|+++|+||..-..... ++...-.|.|... ..++..+.|++.. .
T Consensus 23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~---------~~~~a~~~l~~~~~~l~ 93 (167)
T 2re1_A 23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRG---------DYKQTLEILSERQDSIG 93 (167)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGG---------GHHHHHHHHHHSSTTTT
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEech---------HHHHHHHHHHHHHHHcC
Confidence 3568888884 99999999999999999999987554322 3444555777532 2233344454422 1
Q ss_pred cC----CCCceEEEEEecC---CCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHH
Q 013389 320 RR----ASEGVRLELCMED---RQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKI 391 (444)
Q Consensus 320 rr----~~~~~~lev~~~D---RpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l 391 (444)
.. ......+.|.+.+ +||+++++.++|.++|+||... +|... .=.|+|...+ ..+.++.|.++|
T Consensus 94 ~~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i--stse~--~is~vv~~~d----~~~av~~Lh~~f 164 (167)
T 2re1_A 94 AASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI--STSEI--KVSVLIDEKY----MELATRVLHKAF 164 (167)
T ss_dssp CSEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE--EECSS--EEEEEEEGGG----HHHHHHHHHHHT
T ss_pred CceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE--EcccC--EEEEEEeHHH----HHHHHHHHHHHh
Confidence 10 1124678999887 9999999999999999999984 34222 2334443211 014556666655
No 16
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=97.41 E-value=0.0018 Score=63.35 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=41.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEE
Q 013389 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD--GRFFMDVFHVT 82 (444)
Q Consensus 34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~--~g~~~dvF~V~ 82 (444)
...+++|.|+|||||++++++.|+++|+||.+++.+++ .|+|.-...+.
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~ 71 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIR 71 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEe
Confidence 45689999999999999999999999999999999875 67765444444
No 17
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=97.38 E-value=0.0039 Score=60.55 Aligned_cols=112 Identities=9% Similarity=0.043 Sum_probs=69.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhcc---CCC
Q 013389 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIH---YGR 109 (444)
Q Consensus 35 ~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~---~~~ 109 (444)
..+++|.|+|||||+++++++|+++|+||.+++.++ ..|+|.-...+.-+.+ ... .+.|+++|.... ...
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~~~----~~~L~~~f~~la~~~~m~ 80 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-VIP----LASLRTGFGVIAAKFTMG 80 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-CCC----HHHHHHHHHHHHHHTTCE
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-CCC----HHHHHHHHHHHHHHcCCE
Confidence 468999999999999999999999999999999974 5676654444543332 122 233444443221 110
Q ss_pred C--CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe
Q 013389 110 S--NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT 151 (444)
Q Consensus 110 ~--~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T 151 (444)
- ........|-|...-+-.-|..+-.....-.+++.=+-+.+
T Consensus 81 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis 124 (288)
T 3obi_A 81 WHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS 124 (288)
T ss_dssp EEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred EEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEc
Confidence 0 11122344555555555577777777776666655444444
No 18
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=97.37 E-value=0.00098 Score=60.09 Aligned_cols=109 Identities=14% Similarity=0.173 Sum_probs=72.2
Q ss_pred CCeEEEEE-EeCCCccHHHHHHHHHHhCCceEEEEEEEec---CCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC
Q 013389 33 PTATLVKV-DSARRHGILLEAVQVLTDLNLLIKKAYISSD---GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG 108 (444)
Q Consensus 33 ~~~t~V~v-~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~---~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~ 108 (444)
.+.+.|+| ..+|+||.++++.+.|++.|+||.-...++. +|-.-..|.|...+. ++..+.|++ +.....+
T Consensus 13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~-----~~a~~~l~~-~~~~~~~ 86 (178)
T 2dtj_A 13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDG-----RRAMEILKK-LQVQGNW 86 (178)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHH-----HHHHHHHHT-TTTTTTC
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccH-----HHHHHHHHH-HHHhcCC
Confidence 46788888 4699999999999999999999987665532 332212366554211 222222332 1111111
Q ss_pred CC-CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEE
Q 013389 109 RS-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEA 147 (444)
Q Consensus 109 ~~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A 147 (444)
.. ....+...|.|.|. ++||.++++..+|++.|+||...
T Consensus 87 ~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~i 129 (178)
T 2dtj_A 87 TNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI 129 (178)
T ss_dssp SEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEE
T ss_pred CeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEE
Confidence 11 12345677889887 89999999999999999999873
No 19
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=97.28 E-value=0.0013 Score=58.43 Aligned_cols=105 Identities=10% Similarity=0.111 Sum_probs=72.7
Q ss_pred CCeEEEEEEe-CCCccHHHHHHHHHHhCCceEEEEEEEe---cCCeEEEEEEEEeCCCCCCCchHHHHHHHH---Hhhhc
Q 013389 33 PTATLVKVDS-ARRHGILLEAVQVLTDLNLLIKKAYISS---DGRFFMDVFHVTDLNGNKLTDESVISYIEQ---SLETI 105 (444)
Q Consensus 33 ~~~t~V~v~~-~dr~Gll~~i~~vL~~~~l~I~~A~i~t---~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~---aL~~~ 105 (444)
.+.+.|++.+ +|+||.++++.++|++.|+||.-...+. +.|..-..|.|...+. ++..+.|++ .+...
T Consensus 14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~-----~~a~~~L~~~~~~~~~~ 88 (167)
T 2dt9_A 14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFA-----QEALEALEPVLAEIGGE 88 (167)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGH-----HHHHHHHHHHHHHHCCE
T ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHH-----HHHHHHHHHHHHHhCCc
Confidence 4677888876 8999999999999999999998765542 2443334576654322 223333333 23211
Q ss_pred cCCCCCCCCCceEEEEEEcC---CcchHHHHHHHHHHCCCeEEE
Q 013389 106 HYGRSNSFNGLTALELTGTD---RVGLLSEVFAVLADLQCSVVE 146 (444)
Q Consensus 106 ~~~~~~~~~~~t~i~v~~~D---rpGLl~~i~~vL~~~~~~I~~ 146 (444)
. ....+...+.|.|.+ +||.++++..+|++.|+||..
T Consensus 89 v----~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~ 128 (167)
T 2dt9_A 89 A----ILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEM 128 (167)
T ss_dssp E----EEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCE
T ss_pred E----EEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEE
Confidence 0 123456678999987 999999999999999999954
No 20
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=97.28 E-value=0.0051 Score=59.67 Aligned_cols=101 Identities=12% Similarity=0.096 Sum_probs=63.6
Q ss_pred eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec--CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhc-----
Q 013389 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVG----- 319 (444)
Q Consensus 247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~----- 319 (444)
..+|+|.|+||||+.++|+..|+++|+||.+.+-++. .+++.-...+.-+. .. ..+.|++.|.+.-+
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~----~~~~L~~~f~~la~~l~m~ 81 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD--DF----DEAGFRAGLAERSEAFGMA 81 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS--SC----CHHHHHHHHHHHHGGGTCE
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC--CC----CHHHHHHHHHHHHHHcCCE
Confidence 4689999999999999999999999999999999863 45555433333222 11 25667777654211
Q ss_pred ---cCCCCceEEEEEecCCCchHHHHHHHHHHCCceE
Q 013389 320 ---RRASEGVRLELCMEDRQGLLADVTRTFRENGLNV 353 (444)
Q Consensus 320 ---rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I 353 (444)
+...+...|-|..--+---|.++-....+..++.
T Consensus 82 ~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~ 118 (286)
T 3n0v_A 82 FELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGM 118 (286)
T ss_dssp EEEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCC
T ss_pred EEeecCCCCcEEEEEEeCCCCCHHHHHHHHHCCCCCc
Confidence 1122233444444444446666666666554543
No 21
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=97.28 E-value=0.0045 Score=60.10 Aligned_cols=112 Identities=8% Similarity=-0.036 Sum_probs=64.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhcc---CC
Q 013389 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIH---YG 108 (444)
Q Consensus 34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~---~~ 108 (444)
...+++|.|+|||||++++++.|+++|+||.+++.++ ..|+|.-...+..+. ... .+.|++++.... ..
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~----~~~L~~~f~~la~~l~m 80 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD--DFD----EAGFRAGLAERSEAFGM 80 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS--SCC----HHHHHHHHHHHHGGGTC
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC--CCC----HHHHHHHHHHHHHHcCC
Confidence 3478999999999999999999999999999999985 567665344443322 122 234444443221 11
Q ss_pred C-C-CCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe
Q 013389 109 R-S-NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT 151 (444)
Q Consensus 109 ~-~-~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T 151 (444)
. . ........|-|.+.-+-.-|..+-.....-.+++.=+-+.+
T Consensus 81 ~~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Vis 125 (286)
T 3n0v_A 81 AFELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVS 125 (286)
T ss_dssp EEEEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCCEEEEEEE
T ss_pred EEEeecCCCCcEEEEEEeCCCCCHHHHHHHHHCCCCCcEEEEEEe
Confidence 0 0 11111223444444344466666666655544443333443
No 22
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=97.26 E-value=0.0068 Score=58.86 Aligned_cols=107 Identities=14% Similarity=0.189 Sum_probs=71.5
Q ss_pred eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec--CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH---hc--
Q 013389 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA---VG-- 319 (444)
Q Consensus 247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a---l~-- 319 (444)
..+|+|.|+||||+.++|+..|+++|+||.+.+-++. .+++.-...+.-+.+ .. ..+.|++.|... +.
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~~----~~~~L~~~f~~la~~~~m~ 80 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-VI----PLASLRTGFGVIAAKFTMG 80 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-CC----CHHHHHHHHHHHHHHTTCE
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-CC----CHHHHHHHHHHHHHHcCCE
Confidence 4689999999999999999999999999999998753 456554444432322 11 245666666432 21
Q ss_pred ---cCCCCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEe
Q 013389 320 ---RRASEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEV 358 (444)
Q Consensus 320 ---rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i 358 (444)
+...+...|-|..--+---|.++-...++..+++.-+-|
T Consensus 81 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~V 122 (288)
T 3obi_A 81 WHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAI 122 (288)
T ss_dssp EEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEE
T ss_pred EEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEE
Confidence 112234556666666666888888888877776543433
No 23
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=97.25 E-value=0.0037 Score=60.72 Aligned_cols=114 Identities=10% Similarity=-0.038 Sum_probs=65.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC--C
Q 013389 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG--R 109 (444)
Q Consensus 34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~--~ 109 (444)
...++++.|+|||||++++++.|+++|+||.+++.++ ..|+|.-...+.. ++... ..+.+.++. +...... +
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~~~~~--~~L~~~f~~-la~~~~m~~~ 81 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEI-PVAGV--NDFNSAFGK-VVEKYNAEWW 81 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC-CC-----CHHHHHHHH-HHGGGTCEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEc-CCCCH--HHHHHHHHH-HHHHcCCeeE
Confidence 4578999999999999999999999999999999974 5676653433332 22111 123333332 2222111 0
Q ss_pred CCCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEe
Q 013389 110 SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT 151 (444)
Q Consensus 110 ~~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T 151 (444)
-........|-|.+.-+-.-|..+-.....-.+++.=+-+.+
T Consensus 82 l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis 123 (287)
T 3nrb_A 82 FRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDMEVVGIIS 123 (287)
T ss_dssp EEETTCCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEE
T ss_pred eeccCCCcEEEEEEeCCCcCHHHHHHHHHCCCCCeEEEEEEe
Confidence 011111233444444444566677777666655544344444
No 24
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=97.24 E-value=0.0044 Score=60.55 Aligned_cols=101 Identities=15% Similarity=0.202 Sum_probs=63.8
Q ss_pred eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec--CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH---hc--
Q 013389 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAA---VG-- 319 (444)
Q Consensus 247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~a---l~-- 319 (444)
..+++|.|+||||+.+.|+..|+++|+||.+++-++. .+++.-...+.-+.+ .. ..+.|++.|... +.
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~-~~----~~~~L~~~l~~la~~l~m~ 96 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL-PF----DLDGFREAFTPIAEEFSMD 96 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS-SS----CHHHHHHHHHHHHHHHTCE
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC-CC----CHHHHHHHHHHHHHHhCCe
Confidence 3689999999999999999999999999999999875 466554443432221 11 245666666432 21
Q ss_pred ---cCCCCceEEEEEecCCCchHHHHHHHHHHCCce
Q 013389 320 ---RRASEGVRLELCMEDRQGLLADVTRTFRENGLN 352 (444)
Q Consensus 320 ---rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~ 352 (444)
+...+..++-|..--+-.-|.++-...++..++
T Consensus 97 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~ 132 (302)
T 3o1l_A 97 WRITDSAQKKRVVLMASRESHCLADLLHRWHSDELD 132 (302)
T ss_dssp EEEEETTSCCEEEEEECSCCHHHHHHHHHHHTTCSC
T ss_pred eeecccCCCcEEEEEEeCCchhHHHHHHHHHCCCCC
Confidence 111223344444444445667777766665554
No 25
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=97.17 E-value=0.0072 Score=58.79 Aligned_cols=104 Identities=13% Similarity=0.173 Sum_probs=64.0
Q ss_pred eEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec--CCEEEEEEEEEeC-CCCCCCCHHHHHHHHHHHHHH---hc-
Q 013389 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLEFYIRHI-DGTPISSEPERQRVIQCLEAA---VG- 319 (444)
Q Consensus 247 ~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~--g~~a~d~F~V~~~-~g~~l~~~~~~~~l~~~L~~a---l~- 319 (444)
..++++.|+||||+.++|+..|+++|+||.+++-++. .+++.-...+.-+ .+... ..+.|++.|... +.
T Consensus 10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~----~~~~L~~~f~~la~~~~m 85 (292)
T 3lou_A 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADAL----RVDALRREFEPIAERFRM 85 (292)
T ss_dssp EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----C----CHHHHHHHHHHHHHHHTC
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCC----CHHHHHHHHHHHHHhcCc
Confidence 4689999999999999999999999999999999863 4555433333222 01011 245666666432 21
Q ss_pred ----cCCCCceEEEEEecCCCchHHHHHHHHHHCCceEE
Q 013389 320 ----RRASEGVRLELCMEDRQGLLADVTRTFRENGLNVT 354 (444)
Q Consensus 320 ----rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~ 354 (444)
+...+...+-|..--+---|.++-...++..+++.
T Consensus 86 ~~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~ 124 (292)
T 3lou_A 86 QWAIHDVAARPKVLIMVSKLEHCLADLLFRWKMGELKMD 124 (292)
T ss_dssp EEEEEETTSCCEEEEEECSCCHHHHHHHHHHHHTSSCCE
T ss_pred EEEeeccCCCCEEEEEEcCCCcCHHHHHHHHHcCCCCcE
Confidence 11222334444444444567777777766655433
No 26
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=97.12 E-value=0.0064 Score=59.13 Aligned_cols=49 Identities=8% Similarity=0.057 Sum_probs=40.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEE
Q 013389 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVT 82 (444)
Q Consensus 34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t--~~g~~~dvF~V~ 82 (444)
...++++.|+|||||++++++.|+++|+||.+++.++ ..|+|.-...+.
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~ 59 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFH 59 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEE
Confidence 4578999999999999999999999999999999985 567665344443
No 27
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=97.09 E-value=0.0017 Score=57.77 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=50.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC--CeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN--GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (444)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~--~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL 188 (444)
..|.|.+.|+||+|++|+++|+++|+||.+..+.+.. +...-+|.|.. +++.++.|.++|.++.
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~--------d~~~leqI~kqL~Kl~ 69 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--------DEKVLEQIEKQLHKLV 69 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--------CHHHHHHHHHHHHHST
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec--------cHHHHHHHHHHHcCCC
Confidence 5789999999999999999999999999999887543 45555565542 3567788888888743
No 28
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=97.02 E-value=0.012 Score=57.19 Aligned_cols=102 Identities=13% Similarity=0.183 Sum_probs=66.0
Q ss_pred CeEEEEEEccCCccHHHHHHHHHHhCCeeEEEEEEEec--CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhc----
Q 013389 246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVG---- 319 (444)
Q Consensus 246 ~~tvv~V~~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~---- 319 (444)
...+|+|.|+||||+.++|+..|+++|+||.+++-++. .+++.-...+. ..+ . ..+.|++.|...-+
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~-~~~--~----~~~~L~~~f~~la~~~~m 78 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVE-IPV--A----GVNDFNSAFGKVVEKYNA 78 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEE-CCC---------CHHHHHHHHHHGGGTC
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEE-cCC--C----CHHHHHHHHHHHHHHcCC
Confidence 35789999999999999999999999999999999753 45555333332 211 1 12356666644211
Q ss_pred ----cCCCCceEEEEEecCCCchHHHHHHHHHHCCceEE
Q 013389 320 ----RRASEGVRLELCMEDRQGLLADVTRTFRENGLNVT 354 (444)
Q Consensus 320 ----rr~~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~ 354 (444)
+...+...+-|..--+---|.++-...++..+++.
T Consensus 79 ~~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~ 117 (287)
T 3nrb_A 79 EWWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDME 117 (287)
T ss_dssp EEEEEETTCCCEEEEEECSCCHHHHHHHHHHHHTSSCCE
T ss_pred eeEeeccCCCcEEEEEEeCCCcCHHHHHHHHHCCCCCeE
Confidence 11222345555555555678888888877766543
No 29
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=97.00 E-value=0.007 Score=54.39 Aligned_cols=132 Identities=15% Similarity=0.164 Sum_probs=84.8
Q ss_pred CCeEEEEEE-ccCCccHHHHHHHHHHhCCeeEEEEEEEec---CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc
Q 013389 245 RSYSVVNVQ-CKDRTKLLFDVVCTLTDMEYVVFHATINTA---GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR 320 (444)
Q Consensus 245 ~~~tvv~V~-~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~---g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r 320 (444)
++.+.|+|. .+|+||.++++...|++.|+||..-..++. ++...-.|.+... ..++..+.|++....
T Consensus 13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~---------d~~~a~~~l~~~~~~ 83 (178)
T 2dtj_A 13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS---------DGRRAMEILKKLQVQ 83 (178)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH---------HHHHHHHHHHTTTTT
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc---------cHHHHHHHHHHHHHh
Confidence 467788884 699999999999999999999987655443 2233334666532 233444445442111
Q ss_pred ---C----CCCceEEEEEec---CCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHH
Q 013389 321 ---R----ASEGVRLELCME---DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQK 390 (444)
Q Consensus 321 ---r----~~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~ 390 (444)
. ......|.|.+. ++||+++++.++|.+.|+||.... |.. ..-.|.|...+ ..+.++.|.++
T Consensus 84 ~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe--~~Is~vV~~~d----~~~Av~~Lh~~ 155 (178)
T 2dtj_A 84 GNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSE--IRISVLIREDD----LDAAARALHEQ 155 (178)
T ss_dssp TTCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EET--TEEEEEEEGGG----HHHHHHHHHHH
T ss_pred cCCCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCC--CeEEEEEeHHH----HHHHHHHHHHH
Confidence 1 112356778876 899999999999999999998853 322 23345552111 02456677777
Q ss_pred Hhh
Q 013389 391 IGL 393 (444)
Q Consensus 391 l~~ 393 (444)
|..
T Consensus 156 F~l 158 (178)
T 2dtj_A 156 FQL 158 (178)
T ss_dssp HTC
T ss_pred Hcc
Confidence 653
No 30
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=96.96 E-value=0.0017 Score=57.86 Aligned_cols=68 Identities=18% Similarity=0.289 Sum_probs=52.4
Q ss_pred eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC--ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccc
Q 013389 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER--DEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE 400 (444)
Q Consensus 326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g--~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~ 400 (444)
+.|.|...||||+|++|+.+|+++|+||.++.+.+.. +...-+|.+. . . +..+++|.++|.+. ..|.+
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~--d---~~~leqI~kqL~Kl-~dV~~ 73 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G--D---EKVLEQIEKQLHKL-VDVLR 73 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S--C---HHHHHHHHHHHHHS-TTEEE
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-c--c---HHHHHHHHHHHcCC-CCEEE
Confidence 5789999999999999999999999999999997443 3455555554 2 2 57889999998883 34443
No 31
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=96.94 E-value=0.0039 Score=55.38 Aligned_cols=135 Identities=13% Similarity=0.128 Sum_probs=83.4
Q ss_pred CCCeEEEEEEc-cCCccHHHHHHHHHHhCCeeEEEEEEEec---CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhc
Q 013389 244 DRSYSVVNVQC-KDRTKLLFDVVCTLTDMEYVVFHATINTA---GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVG 319 (444)
Q Consensus 244 ~~~~tvv~V~~-~DRpGLL~~i~~~L~~~~~nI~~A~I~T~---g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~ 319 (444)
.++.+.|+|.+ +|+||.++++..+|++.|+||..-..... .+...-.|.|...+ .++..++-+.+...+.
T Consensus 13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d------~~~a~~~L~~~~~~~~ 86 (167)
T 2dt9_A 13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDF------AQEALEALEPVLAEIG 86 (167)
T ss_dssp ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGG------HHHHHHHHHHHHHHHC
T ss_pred eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHH------HHHHHHHHHHHHHHhC
Confidence 34678888876 89999999999999999999987433221 23455567776432 1122222222333332
Q ss_pred c---CCCCceEEEEEecC---CCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHh
Q 013389 320 R---RASEGVRLELCMED---RQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIG 392 (444)
Q Consensus 320 r---r~~~~~~lev~~~D---RpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~ 392 (444)
- -.+.-..+.|.+.+ +||+++.+.++|.+.|+||.... |- +. .=.|.|...+ .++.+..|.+++.
T Consensus 87 ~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~S-e~-~is~vv~~~d----~~~Av~~Lh~~f~ 157 (167)
T 2dt9_A 87 GEAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TS-EV-RISVIIPAEY----AEAALRAVHQAFE 157 (167)
T ss_dssp CEEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--EC-SS-EEEEEEEGGG----HHHHHHHHHHHTC
T ss_pred CcEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--cc-CC-EEEEEEeHHH----HHHHHHHHHHHHc
Confidence 1 01223568888876 99999999999999999995543 33 22 3345453221 0244555655543
No 32
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=96.88 E-value=0.0033 Score=56.03 Aligned_cols=64 Identities=13% Similarity=0.188 Sum_probs=50.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC--CeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHh
Q 013389 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN--GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (444)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~--~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL 188 (444)
..|.|...|+||+|++|+++|+++|+||.+..+.... +...-+|.|.. ++..++.|.++|.++.
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~--------d~~~leql~kQL~Kl~ 70 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKLI 70 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHST
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec--------cHHHHHHHHHHhcCCC
Confidence 5789999999999999999999999999998887543 55555566653 2467788888888743
No 33
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=96.80 E-value=0.053 Score=57.89 Aligned_cols=209 Identities=14% Similarity=0.138 Sum_probs=129.4
Q ss_pred CCeEEEEEEeC---CCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC-
Q 013389 33 PTATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG- 108 (444)
Q Consensus 33 ~~~t~V~v~~~---dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~- 108 (444)
.+...|++.+. ++||+.+++.++|++.|+||.-.. ++.- - ..|.|...+. ++.++.|++.+......
T Consensus 353 ~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is-tSe~--~-Is~vI~~~d~-----~~Av~aLh~~f~~~~t~~ 423 (600)
T 3l76_A 353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS-TSEV--K-VSCVIDQRDA-----DRAIAALSNAFGVTLSPP 423 (600)
T ss_dssp CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE-ECSS--E-EEEEEEGGGH-----HHHHHHHHHHTTCCBCCC
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe-cCCC--E-EEEEEcHHHH-----HHHHHHHHHhhcccCCCc
Confidence 46889999987 789999999999999999997765 3322 2 2355554322 34666777776543110
Q ss_pred ---------C--C--CCCCCceEEEEE-EcCCcchHHHHHHHHHHCCCeEEEEEEEee----CCe-EEE-EEEEEcCCCC
Q 013389 109 ---------R--S--NSFNGLTALELT-GTDRVGLLSEVFAVLADLQCSVVEAKVWTH----NGR-IAS-LIYVKDCNSG 168 (444)
Q Consensus 109 ---------~--~--~~~~~~t~i~v~-~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~----~~~-~~d-vf~V~d~~~g 168 (444)
+ + ....+...|.|. .+|+||..++|...|+++|+||.--..... +|. ..+ .|.|..
T Consensus 424 ~~~~~~~~~~~v~Gia~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~---- 499 (600)
T 3l76_A 424 KNQTDTSHLPAVRGVALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE---- 499 (600)
T ss_dssp CCCCC---CCSCCEEEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH----
T ss_pred cccccccccCceEEEEeeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH----
Confidence 0 1 223455677775 589999999999999999999964333221 232 334 355543
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCCcccccchhhcccccchhHHhhhhhccccccccccccCCCCCCCEEEEEecCCCCeE
Q 013389 169 SPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYS 248 (444)
Q Consensus 169 ~~i~~~~r~~~i~~~L~~vL~~~~~~~~~~~~~~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t 248 (444)
+.+....+.|.+ +..+.. + -.|.++ .+..
T Consensus 500 ------~d~~~a~~~l~~-~~~~~~----------------------------~------------~~v~~~----~~~a 528 (600)
T 3l76_A 500 ------GDSSQAEAILQP-LIKDWL----------------------------D------------AAIVVN----KAIA 528 (600)
T ss_dssp ------HHHHHHHHHHHH-HTTTST----------------------------T------------CEEEEE----CCEE
T ss_pred ------HHHHHHHHHHHH-HHHhcC----------------------------C------------ceEEEe----CCeE
Confidence 122333333433 111110 0 113333 3577
Q ss_pred EEEEEc---cCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Q 013389 249 VVNVQC---KDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV 318 (444)
Q Consensus 249 vv~V~~---~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al 318 (444)
.|.|.+ +.+||.-+++..+|.+.|+||..-. |.. .--.+.|... ..++..++|.+++
T Consensus 529 kVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis--tSE--i~Is~vV~~~---------~~~~Av~alh~~F 588 (600)
T 3l76_A 529 KVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA--TSE--IKISCVVPQD---------RGVDALKAAHSAF 588 (600)
T ss_dssp EEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE--ECS--SEEEEEEEGG---------GHHHHHHHHHHHT
T ss_pred EEEEECcccccCccHHHHHHHHHHHCCCceEEEE--cCC--ceEEEEEeHH---------HHHHHHHHHHHHh
Confidence 888886 7999999999999999999997643 322 2233556532 3445555666554
No 34
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=96.78 E-value=0.0039 Score=55.52 Aligned_cols=68 Identities=21% Similarity=0.348 Sum_probs=52.4
Q ss_pred eEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC--ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccc
Q 013389 326 VRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER--DEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE 400 (444)
Q Consensus 326 ~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g--~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~ 400 (444)
..|.|...||||+|++|+.+|+++|+||.++.+.+.. +...=+|.|. |. +..+++|.+++.+. ..|.+
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~---~d---~~~leql~kQL~Kl-~dV~~ 74 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN---GP---DEIVEQITKQLNKL-IEVVK 74 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE---EC---HHHHHHHHHHHHHS-TTEEE
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe---cc---HHHHHHHHHHhcCC-CCEEE
Confidence 5789999999999999999999999999999996433 3455555554 11 57889999998883 34443
No 35
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=96.72 E-value=0.0061 Score=53.83 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=45.1
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389 327 RLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393 (444)
Q Consensus 327 ~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~ 393 (444)
.|+|.+.||+|||++|+++|.+.++||..+++.+.|. +|+.-. ..+...+..|.+++..
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~-----i~~~~~---~~~~~~~~~L~~~l~~ 60 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR-----IYLNFA---ELEFESFSSLMAEIRR 60 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE-----EEEEEC---CCCHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE-----EEEEEE---eCCHHHHHHHHHHHHc
Confidence 5899999999999999999999999999999987742 556433 1223455666666555
No 36
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=96.60 E-value=0.0074 Score=54.91 Aligned_cols=63 Identities=17% Similarity=0.335 Sum_probs=49.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEee-cCC-ceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVS-TER-DEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~-T~g-~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~ 393 (444)
...|.|...|+||.|++|+.+|+++|+||.+..+. |.. +...=++.|... +..+++|.+++.+
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~------e~~ieqL~kQL~K 93 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD------DKTIEQIEKQAYK 93 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC------TTHHHHHHHHHTT
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC------HHHHHHHHHHhcC
Confidence 46799999999999999999999999999999986 444 233334445322 4678999999988
No 37
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=96.59 E-value=0.009 Score=53.94 Aligned_cols=110 Identities=12% Similarity=0.092 Sum_probs=72.7
Q ss_pred CCeEEEEE-EeCCCccHHHHHHHHHHhCCceEEEEEEE-ec--CCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC
Q 013389 33 PTATLVKV-DSARRHGILLEAVQVLTDLNLLIKKAYIS-SD--GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG 108 (444)
Q Consensus 33 ~~~t~V~v-~~~dr~Gll~~i~~vL~~~~l~I~~A~i~-t~--~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~ 108 (444)
.+.+.|+| .-+|+||.++++.+.|++.|+||.--... +. .|..-..|.|...+. +...+.|++ +.....+
T Consensus 14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~-----~~a~~~L~~-~~~el~~ 87 (181)
T 3s1t_A 14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVG-----PAAVEKLDS-LRNEIGF 87 (181)
T ss_dssp CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTH-----HHHHHHHHH-THHHHCC
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHH-----HHHHHHHHH-HHHhcCc
Confidence 45666665 35799999999999999999999765543 22 565445677765322 222222332 1111000
Q ss_pred CC-CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEEE
Q 013389 109 RS-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAK 148 (444)
Q Consensus 109 ~~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~ 148 (444)
.. ....+...|.|.|. +.||+.+++..+|++.|+||....
T Consensus 88 ~~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is 131 (181)
T 3s1t_A 88 SQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS 131 (181)
T ss_dssp SEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred ceEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence 00 12245678888887 799999999999999999998755
No 38
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=96.29 E-value=0.012 Score=53.45 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=50.0
Q ss_pred ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEE-eeC-CeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHHhc
Q 013389 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW-THN-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (444)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~-T~~-~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~vL~ 189 (444)
...|.|...|+||.|++|+++|+.+|+||.+..+. |.+ +...-++.|... +..++.|.++|.++..
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--------e~~ieqL~kQL~KLid 96 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--------DKTIEQIEKQAYKLVE 96 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--------TTHHHHHHHHHTTSTT
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--------HHHHHHHHHHhcCcCc
Confidence 46899999999999999999999999999998876 444 444455566532 2345778888776544
No 39
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=96.13 E-value=0.053 Score=55.29 Aligned_cols=107 Identities=14% Similarity=0.168 Sum_probs=70.5
Q ss_pred CeEEEEEE-eCCCccHHHHHHHHHHhCCceEEEEEEEe-c--CCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCC
Q 013389 34 TATLVKVD-SARRHGILLEAVQVLTDLNLLIKKAYISS-D--GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGR 109 (444)
Q Consensus 34 ~~t~V~v~-~~dr~Gll~~i~~vL~~~~l~I~~A~i~t-~--~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~ 109 (444)
+.+.|+|. .+|++|.++++.+.|++.|+||.--.+.+ . .|..-..|.|...+. ++..+.+++ +.....+.
T Consensus 263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~-----~~a~~~l~~-~~~~~~~~ 336 (421)
T 3ab4_A 263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDG-----RRAMEILKK-LQVQGNWT 336 (421)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTH-----HHHHHHHHH-HHTTTTCS
T ss_pred CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhH-----HHHHHHHHH-HHHHcCCc
Confidence 34566676 58999999999999999999998765543 2 453334566654211 223333443 21111100
Q ss_pred C-CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEE
Q 013389 110 S-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVE 146 (444)
Q Consensus 110 ~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~ 146 (444)
+ ....+...+.|.|. +.||.++++..+|++.|+||..
T Consensus 337 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~ 377 (421)
T 3ab4_A 337 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL 377 (421)
T ss_dssp EEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCE
T ss_pred eEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEE
Confidence 1 12234566888886 7999999999999999999983
No 40
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=95.92 E-value=0.03 Score=49.25 Aligned_cols=59 Identities=24% Similarity=0.328 Sum_probs=45.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHH
Q 013389 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (444)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~ 186 (444)
.|+|.+.||+||+++|+.+|+.+++||..+.+.+. |. +++.-+ . .+.+.+..+...+..
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~----i~~~~~--~---~~~~~~~~L~~~l~~ 60 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR----IYLNFA--E---LEFESFSSLMAEIRR 60 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE----EEEEEC--C---CCHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE----EEEEEE--e---CCHHHHHHHHHHHHc
Confidence 58899999999999999999999999999999765 33 455442 1 134556667766665
No 41
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=95.73 E-value=0.013 Score=54.10 Aligned_cols=38 Identities=29% Similarity=0.334 Sum_probs=30.9
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCC
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTER 362 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g 362 (444)
...|++.+.||||+|++|+++|+++++||...+..+..
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~ 41 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK 41 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence 35789999999999999999999999999999998864
No 42
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=95.66 E-value=0.098 Score=47.02 Aligned_cols=134 Identities=16% Similarity=0.153 Sum_probs=82.2
Q ss_pred CCeEEEEEE-ccCCccHHHHHHHHHHhCCeeEEEEEEE-ec--CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc
Q 013389 245 RSYSVVNVQ-CKDRTKLLFDVVCTLTDMEYVVFHATIN-TA--GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR 320 (444)
Q Consensus 245 ~~~tvv~V~-~~DRpGLL~~i~~~L~~~~~nI~~A~I~-T~--g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r 320 (444)
++.+.|+|. .+|+||.+++|..+|++.|+||..-.-. +. .+...-.|.|...+ .+...++.+.+...+.-
T Consensus 14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~------~~~a~~~L~~~~~el~~ 87 (181)
T 3s1t_A 14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV------GPAAVEKLDSLRNEIGF 87 (181)
T ss_dssp CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTT------HHHHHHHHHHTHHHHCC
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhH------HHHHHHHHHHHHHhcCc
Confidence 355666664 5899999999999999999999754332 22 34556678786432 11222222223332311
Q ss_pred ---C-CCCceEEEEEec---CCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHh
Q 013389 321 ---R-ASEGVRLELCME---DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIG 392 (444)
Q Consensus 321 ---r-~~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~ 392 (444)
. ...-..+.|.+. ++||+.+.+.++|.+.|+||.....+ ...=.|.|...+ .++.+..|.++|.
T Consensus 88 ~~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstS----ei~Is~vV~~~d----~~~Av~aLH~~f~ 158 (181)
T 3s1t_A 88 SQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS----EIRISVLCRDTE----LDKAVVALHEAFG 158 (181)
T ss_dssp SEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE----TTEEEEEEEGGG----HHHHHHHHHHHHT
T ss_pred ceEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcC----CCEEEEEEeHHH----HHHHHHHHHHHHc
Confidence 0 122456777766 89999999999999999999887722 222234453221 1245566666654
No 43
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=95.52 E-value=0.096 Score=47.97 Aligned_cols=110 Identities=12% Similarity=0.086 Sum_probs=71.2
Q ss_pred CCeEEEEEE-eCCCccHHHHHHHHHHhCCceEEEEEEEe---cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCC
Q 013389 33 PTATLVKVD-SARRHGILLEAVQVLTDLNLLIKKAYISS---DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG 108 (444)
Q Consensus 33 ~~~t~V~v~-~~dr~Gll~~i~~vL~~~~l~I~~A~i~t---~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~ 108 (444)
.+.+.|++. -+|+||+.+++.+.|++.|+||----.+. .++..-..|.+...+. +...+.++ .+.....+
T Consensus 33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~-----~~~~~~l~-~~~~~~~~ 106 (200)
T 4go7_X 33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVG-----PAAVEKLD-SLRNEIGF 106 (200)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGH-----HHHHHHHH-TTHHHHCC
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhH-----HHHHHHHH-HHHhhhce
Confidence 457777775 48999999999999999999987654432 3455555677764322 11222222 22211110
Q ss_pred CC-CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEEE
Q 013389 109 RS-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAK 148 (444)
Q Consensus 109 ~~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~ 148 (444)
.. ....+...|.|.|. ..||+.+++..+|++.|+||.--.
T Consensus 107 ~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs 150 (200)
T 4go7_X 107 SQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS 150 (200)
T ss_dssp SEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred eeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE
Confidence 01 12234567777765 689999999999999999998653
No 44
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=95.19 E-value=0.18 Score=51.24 Aligned_cols=134 Identities=13% Similarity=0.124 Sum_probs=82.9
Q ss_pred CCeEEEEEE-ccCCccHHHHHHHHHHhCCeeEEEEEEEec---CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc
Q 013389 245 RSYSVVNVQ-CKDRTKLLFDVVCTLTDMEYVVFHATINTA---GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR 320 (444)
Q Consensus 245 ~~~tvv~V~-~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~---g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r 320 (444)
++.+.|+|. .+|+||.++++...|++.|+||..-...|. .+...-.|.|... +..+..++.+.+...+..
T Consensus 262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~------~~~~a~~~l~~~~~~~~~ 335 (421)
T 3ab4_A 262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS------DGRRAMEILKKLQVQGNW 335 (421)
T ss_dssp CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT------THHHHHHHHHHHHTTTTC
T ss_pred CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech------hHHHHHHHHHHHHHHcCC
Confidence 466788888 699999999999999999999987654443 2344556777532 111222222223222221
Q ss_pred C----CCCceEEEEEec---CCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHh
Q 013389 321 R----ASEGVRLELCME---DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIG 392 (444)
Q Consensus 321 r----~~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~ 392 (444)
. ...-..+.|.+. ++||+++.+.++|.+.|+||.... |-. ..=.|.|...+ .++.+..|.++|.
T Consensus 336 ~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se--~~is~vV~~~d----~~~Av~~Lh~~f~ 406 (421)
T 3ab4_A 336 TNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSE--IRISVLIREDD----LDAAARALHEQFQ 406 (421)
T ss_dssp SEEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE--EET--TEEEEEEEGGG----HHHHHHHHHHHTT
T ss_pred ceEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE--cCC--CeEEEEEeHHH----HHHHHHHHHHHHh
Confidence 0 112345777775 799999999999999999999553 322 22234443211 1245566666664
No 45
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=95.01 E-value=0.11 Score=47.58 Aligned_cols=136 Identities=17% Similarity=0.177 Sum_probs=83.2
Q ss_pred CCCeEEEEEE-ccCCccHHHHHHHHHHhCCeeEEEEEEEec---CCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhc
Q 013389 244 DRSYSVVNVQ-CKDRTKLLFDVVCTLTDMEYVVFHATINTA---GERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVG 319 (444)
Q Consensus 244 ~~~~tvv~V~-~~DRpGLL~~i~~~L~~~~~nI~~A~I~T~---g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~ 319 (444)
+++.+.|+|. .+|+||+.++|..+|++.|+||-.-.-... .+.....|.+...+ ..+...+.+.+...+.
T Consensus 32 ~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d------~~~~~~~l~~~~~~~~ 105 (200)
T 4go7_X 32 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV------GPAAVEKLDSLRNEIG 105 (200)
T ss_dssp ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGG------HHHHHHHHHTTHHHHC
T ss_pred cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhh------HHHHHHHHHHHHhhhc
Confidence 3467788886 589999999999999999999976432221 23555567765321 1122222233333332
Q ss_pred cC----CCCceEEEEEe---cCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHh
Q 013389 320 RR----ASEGVRLELCM---EDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIG 392 (444)
Q Consensus 320 rr----~~~~~~lev~~---~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~ 392 (444)
.. .+.-.+|.|.+ ..+||+.+.+-++|.+.|+||.... |- | ..=.|.|...+ ..+.+..|-++|.
T Consensus 106 ~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs--tS-E-i~IS~vV~~~d----~~~Av~aLH~~F~ 177 (200)
T 4go7_X 106 FSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TS-E-IRISVLCRDTE----LDKAVVALHEAFG 177 (200)
T ss_dssp CSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE--EC-S-SEEEEEEEGGG----HHHHHHHHHHHHT
T ss_pred eeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE--cc-C-CEEEEEEeHHH----HHHHHHHHHHHhC
Confidence 11 12234555554 5789999999999999999998875 21 1 22224443221 1256777777775
Q ss_pred h
Q 013389 393 L 393 (444)
Q Consensus 393 ~ 393 (444)
-
T Consensus 178 L 178 (200)
T 4go7_X 178 L 178 (200)
T ss_dssp C
T ss_pred C
Confidence 3
No 46
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=94.94 E-value=0.032 Score=51.53 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=31.2
Q ss_pred ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC
Q 013389 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN 153 (444)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~ 153 (444)
...|.|.+.||||+|++|+.+|+++++||...+..+..
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~ 41 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK 41 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence 46899999999999999999999999999999998853
No 47
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=94.46 E-value=0.1 Score=53.97 Aligned_cols=105 Identities=9% Similarity=0.153 Sum_probs=71.1
Q ss_pred CeEEEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHh--------
Q 013389 34 TATLVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSL-------- 102 (444)
Q Consensus 34 ~~t~V~v~~---~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL-------- 102 (444)
+.+.|+|.+ .+++|+++++.++|++.|+||.-....+..- -..|.|...+ .++.++.|++.+
T Consensus 317 ~~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ~tse~--~Is~~V~~~d-----~~~a~~~L~~~l~~~~~~~~ 389 (473)
T 3c1m_A 317 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSET--NISLVVSEED-----VDKALKALKREFGDFGKKSF 389 (473)
T ss_dssp EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTC--CEEEEEEGGG-----HHHHHHHHHHHHCC----CT
T ss_pred CeEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEecCCCC--EEEEEEechH-----HHHHHHHHHHHHhhhccccc
Confidence 456677776 6788999999999999999998766533221 1246666432 245666677666
Q ss_pred hhccCCCC-CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEE
Q 013389 103 ETIHYGRS-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVV 145 (444)
Q Consensus 103 ~~~~~~~~-~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~ 145 (444)
.....+.+ ....+...|.|.|. ++||.++++..+|++.|+||.
T Consensus 390 ~~~~~~~~v~~~~~~a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI~ 436 (473)
T 3c1m_A 390 LNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIK 436 (473)
T ss_dssp TSCCCEEEEEEEEEEEEEEEECTTTTTCTTHHHHHHHHHHHHTCCCC
T ss_pred ccccccceEEEeCCcEEEEEEecCCCCChhHHHHHHHHHHHCCCCEE
Confidence 32100000 11223456888886 589999999999999999995
No 48
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=93.45 E-value=0.28 Score=50.65 Aligned_cols=132 Identities=12% Similarity=0.181 Sum_probs=83.0
Q ss_pred CCeEEEEEEc---cCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHh---
Q 013389 245 RSYSVVNVQC---KDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAV--- 318 (444)
Q Consensus 245 ~~~tvv~V~~---~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al--- 318 (444)
++.+.|+|.+ .++||+++++..+|.+.|+||..-...+.. ..-.|.|...+ .++..+.|.+.+
T Consensus 316 ~~~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ~tse--~~Is~~V~~~d---------~~~a~~~L~~~l~~~ 384 (473)
T 3c1m_A 316 KNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE--TNISLVVSEED---------VDKALKALKREFGDF 384 (473)
T ss_dssp EEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCEEEEEEGGG---------HHHHHHHHHHHHCC-
T ss_pred CCeEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEecCCC--CEEEEEEechH---------HHHHHHHHHHHHhhh
Confidence 4678899986 788999999999999999999875543322 23447775421 334445555544
Q ss_pred -----ccC--C------CCceEEEEEec---CCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChH
Q 013389 319 -----GRR--A------SEGVRLELCME---DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPK 382 (444)
Q Consensus 319 -----~rr--~------~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~ 382 (444)
... . ..-..+.|.+. ++||+++.+.++|.+.|+||... ++|....+.-+|.+.+ . .++
T Consensus 385 ~~~~~~~~~~~~~v~~~~~~a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI~mi---sqgtSe~~Is~vV~~~--d-~~~ 458 (473)
T 3c1m_A 385 GKKSFLNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMI---AQGSSEVNISFVIDEK--D-LLN 458 (473)
T ss_dssp ---CTTSCCCEEEEEEEEEEEEEEEECTTTTTCTTHHHHHHHHHHHHTCCCCEE---EESSCSSEEEEEEEGG--G-HHH
T ss_pred cccccccccccceEEEeCCcEEEEEEecCCCCChhHHHHHHHHHHHCCCCEEEE---ecCCCCceEEEEEcHH--H-HHH
Confidence 211 0 11234677765 58999999999999999999443 2333333333333321 0 124
Q ss_pred HHHHHHHHHhh
Q 013389 383 IIEAVRQKIGL 393 (444)
Q Consensus 383 ~~~~lr~~l~~ 393 (444)
.+..|.++|..
T Consensus 459 Av~aLh~~f~~ 469 (473)
T 3c1m_A 459 CVRKLHEKFIE 469 (473)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 56667766653
No 49
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=93.45 E-value=0.18 Score=48.61 Aligned_cols=117 Identities=19% Similarity=0.268 Sum_probs=72.3
Q ss_pred HhCCeeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC-CCCceEEEEEecCCCchHHHHHHHH
Q 013389 269 TDMEYVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR-ASEGVRLELCMEDRQGLLADVTRTF 346 (444)
Q Consensus 269 ~~~~~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr-~~~~~~lev~~~DRpGLL~~Itr~l 346 (444)
..+|+.|....|.... +... |+|......+..+. +. ...+ ....+.|-+..+|+||-|+++-..|
T Consensus 155 ~~ygL~il~~~I~D~~~N~TR--F~vl~~~~~~~~~~---------~~--~~~~~~~~ktsl~f~~~~~pGaL~~~L~~F 221 (283)
T 2qmx_A 155 ELYGLDILKENLADEEWNITR--FFCIAHENNPDISH---------LK--VRPDVARQKTSIVFALPNEQGSLFRALATF 221 (283)
T ss_dssp HHTTCEEEESSCSSCCCCEEE--EEEEEETTCCCCTT---------SS--SCCEEEEEEEEEEEEEECCTTHHHHHHHHH
T ss_pred HHcCCceecccCcCCCCCeee--EEEEecCccccccc---------cc--cCCCCCCceEEEEEEcCCCCchHHHHHHHH
Confidence 3468888877775543 3444 66665433210000 00 0000 0124556666689999999999999
Q ss_pred HHCCceEEEEEeecCC-ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccc
Q 013389 347 RENGLNVTRAEVSTER-DEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE 400 (444)
Q Consensus 347 ~e~gl~I~~A~i~T~g-~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~ 400 (444)
+.+|||+++.+..-.. ..-.=.||| |.+|..-+ ..++..-++|....-.+|-
T Consensus 222 a~~gINLtkIESRP~~~~~~~Y~Ffv-D~eg~~~d-~~v~~aL~~L~~~~~~~ki 274 (283)
T 2qmx_A 222 ALRGIDLTKIESRPSRKKAFEYLFYA-DFIGHRED-QNVHNALENLREFATMVKV 274 (283)
T ss_dssp HTTTCCEEEEEEEECSSSTTEEEEEE-EEESCTTS-HHHHHHHHHHHTTCSEEEE
T ss_pred HHcCCCeeEEEeeEcCCCCcceEEEE-EEecCCCc-HHHHHHHHHHHHhcCeEEE
Confidence 9999999999997554 447778888 77787654 4444444555554444543
No 50
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=92.74 E-value=0.21 Score=50.64 Aligned_cols=47 Identities=26% Similarity=0.449 Sum_probs=42.1
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEE
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYV 371 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV 371 (444)
...|-+.-.|+||.+..|+.+|.++|+||....+.+.|+.+.-++-+
T Consensus 331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv 377 (404)
T 1sc6_A 331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI 377 (404)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence 35788889999999999999999999999999999988888777766
No 51
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=91.99 E-value=0.36 Score=46.11 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=69.1
Q ss_pred HhCCeeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEe---cCCCchHHHHHH
Q 013389 269 TDMEYVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCM---EDRQGLLADVTR 344 (444)
Q Consensus 269 ~~~~~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~~~~~~lev~~---~DRpGLL~~Itr 344 (444)
..+|+.|....|.... +... |+|..... + .. ...+.|-+.. .|+||-|+++-.
T Consensus 152 ~~ygL~il~~~I~D~~~N~TR--F~vl~~~~-~-------------------~~-~~ktsl~f~~~~~~~~pGaL~~~L~ 208 (267)
T 2qmw_A 152 EAYGFTPIDTHIEDYPHNVTR--FLVIKNQQ-Q-------------------FD-QNATSLMFLITPMHDKPGLLASVLN 208 (267)
T ss_dssp GGGTCCEEEECCCSCSCCEEE--EEEEESCC-C-------------------CC-SSCSEEEEEEEESSCCTTHHHHHHH
T ss_pred HHCCCcEeeccccCCCCCceE--EEEEecCC-C-------------------CC-CCeEEEEEEcCCCCCCcChHHHHHH
Confidence 3458889888886643 4444 77765422 1 11 2345666777 899999999999
Q ss_pred HHHHCCceEEEEEeecCC-ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccc
Q 013389 345 TFRENGLNVTRAEVSTER-DEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKV 398 (444)
Q Consensus 345 ~l~e~gl~I~~A~i~T~g-~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~ 398 (444)
.|+.+|||+++.+..-.. ..-.=.||| |.+ .. ++..+++.-++|......+
T Consensus 209 ~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~e-~~-~d~~v~~aL~~L~~~~~~~ 260 (267)
T 2qmw_A 209 TFALFNINLSWIESRPLKTQLGMYRFFV-QAD-SA-ITTDIKKVIAILETLDFKV 260 (267)
T ss_dssp HHHTTTCCEEEEEEEECSSSTTCEEEEE-EES-CC-SCHHHHHHHHHHHHTTEEE
T ss_pred HHHHcCCCeeEEEEeecCCCCccEEEEE-EEe-cC-CcHHHHHHHHHHHHhcCeE
Confidence 999999999999997544 447778888 565 44 3344444445554433333
No 52
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=91.95 E-value=0.73 Score=45.31 Aligned_cols=118 Identities=16% Similarity=0.121 Sum_probs=69.5
Q ss_pred HhCCeeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEec--CCCchHHHHHHH
Q 013389 269 TDMEYVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCME--DRQGLLADVTRT 345 (444)
Q Consensus 269 ~~~~~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~--DRpGLL~~Itr~ 345 (444)
..+|+.|....|.... +... |+|..... ....+.. ..-.......+.+-+... |+||-|+++-..
T Consensus 161 elYgL~iLa~~I~D~~~N~TR--Flvl~~~~-------~~~~~~~---~~~~~~~~~kts~i~~~~~~~~pGaL~~~L~~ 228 (329)
T 3luy_A 161 ELYDITRIGTAIQDYQGAATD--FLVLSPRA-------EVARLLA---KPRAEANVEYESVLTLIPLVTGPGVLANLLDV 228 (329)
T ss_dssp HHSSEEEEESSCCSCSCCEEE--EEEEECHH-------HHHHHTH---HHHHTTCCCEEEEEEEECSCCSTTHHHHHHHH
T ss_pred HHcCCccccccccCCCcceeE--EEEEeccc-------ccccccc---CCCCCCCCCceEEEEEecCCCCCCHHHHHHHH
Confidence 3468999887776643 4444 77764311 1101100 000011112233444444 799999999999
Q ss_pred HHHCCceEEEEEeecC-CceEEEEEEEEcCCCCCCChHHHHHHHHHHhhccccccc
Q 013389 346 FRENGLNVTRAEVSTE-RDEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKE 400 (444)
Q Consensus 346 l~e~gl~I~~A~i~T~-g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~ 400 (444)
|+.+|||+++.+..-. +..-.=.||| |.+|..-++ .+...-++|....-.+|-
T Consensus 229 Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d~-~v~~AL~~L~~~~~~~ki 282 (329)
T 3luy_A 229 FRDAGLNMTSFISRPIKGRTGTYSFIV-TLDAAPWEE-RFRDALVEIAEHGDWAKT 282 (329)
T ss_dssp HHHTTCCEEEEEEEEETTEEEEEEEEE-EESSCTTSH-HHHHHHHHHHHTTCEEEE
T ss_pred HHHCCcceEEEEeeECCCCCccEEEEE-EEeCCcCCH-HHHHHHHHHHHhCCeEEE
Confidence 9999999999999754 4456677877 778877553 333333445554444543
No 53
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=91.88 E-value=0.32 Score=47.58 Aligned_cols=114 Identities=16% Similarity=0.213 Sum_probs=74.0
Q ss_pred HhCC-eeEEEEEEEecC-CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEec-CCCchHHHHHHH
Q 013389 269 TDME-YVVFHATINTAG-ERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRRASEGVRLELCME-DRQGLLADVTRT 345 (444)
Q Consensus 269 ~~~~-~nI~~A~I~T~g-~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~-DRpGLL~~Itr~ 345 (444)
..+| +.|....|.... +... |+|......+.. ......+.|-+..+ |+||-|+++-..
T Consensus 162 ~~Yg~L~il~~~I~D~~~N~TR--Flvl~~~~~~~~-----------------~~~~~kTSl~f~~~~~~pGaL~~~L~~ 222 (313)
T 3mwb_A 162 AEQPGLNVLAEDIGDNPDAVTR--FILVSRPGALPE-----------------RTGADKTTVVVPLPEDHPGALMEILDQ 222 (313)
T ss_dssp HHCTTCEEEESCCCSCTTCEEE--EEEEECSCCCCC-----------------CCSSEEEEEEEECSSCCTTHHHHHHHH
T ss_pred HHcCChhhhhhcccCCCcceeE--EEEEecCCCCCC-----------------CCCCCeEEEEEEeCCCCCCHHHHHHHH
Confidence 3567 999888886643 4444 777654332100 11223566777775 999999999999
Q ss_pred HHHCCceEEEEEeecCC-ceEEEEEEEEcCCCCCCChHHHHHHHHHHhhcccccccccc
Q 013389 346 FRENGLNVTRAEVSTER-DEALNIFYVTDEMGNPADPKIIEAVRQKIGLSNLKVKELPM 403 (444)
Q Consensus 346 l~e~gl~I~~A~i~T~g-~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~~~~~~~~~~ 403 (444)
|+.+|||+++.+..-.. ..-.=.||| |..|..-+ ..+...-++|......+|--..
T Consensus 223 Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d-~~v~~aL~~L~~~~~~~kiLGs 279 (313)
T 3mwb_A 223 FASRGVNLSRIESRPTGQYLGHYFFSI-DADGHATD-SRVADALAGLHRISPATRFLGS 279 (313)
T ss_dssp HHTTTCCEEEEEEEECSSSTTSEEEEE-EEESCTTS-HHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHCCccEEEEEEeecCCCCccEEEEE-EEeCCCCc-HHHHHHHHHHHHhcCcEEEEee
Confidence 99999999999997544 445667888 77787644 3344444455554445554443
No 54
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=91.40 E-value=0.77 Score=48.04 Aligned_cols=63 Identities=19% Similarity=0.344 Sum_probs=50.3
Q ss_pred CCceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC--CceEEEEEEEEcCCCCCCChHHHHHHHH
Q 013389 323 SEGVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE--RDEALNIFYVTDEMGNPADPKIIEAVRQ 389 (444)
Q Consensus 323 ~~~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~FyV~d~~g~~v~~~~~~~lr~ 389 (444)
++++.|-+.-.|+||.+..|+..|.++|+||....+... |+.+.-++.+ ..+++++.+++|++
T Consensus 452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v----d~~~~~~~l~~l~~ 516 (529)
T 1ygy_A 452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL----DQDVPDDVRTAIAA 516 (529)
T ss_dssp SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE----SSCCCHHHHHHHHH
T ss_pred CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE----CCCCCHHHHHHHhc
Confidence 346788899999999999999999999999999999754 5556655555 23666777888875
No 55
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=91.36 E-value=0.61 Score=47.83 Aligned_cols=106 Identities=11% Similarity=0.176 Sum_probs=68.3
Q ss_pred eEEEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCCC
Q 013389 35 ATLVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSN 111 (444)
Q Consensus 35 ~t~V~v~~---~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~~ 111 (444)
.+.|+|.+ .+.+|.++++.++|++.|++|.-.. ++.. -..|.|...+-.+ ....+++.+++.+....- .
T Consensus 298 ~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~-~~~~---~is~~V~~~d~~~-~~~~~~~el~~~~~~~~v---~ 369 (446)
T 3tvi_A 298 FTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMP-SGVD---SVSLVIEDCKLDG-KCDKIIEEIKKQCNPDSI---E 369 (446)
T ss_dssp EEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBC-EETT---EEEEEEEHHHHTT-THHHHHHHHHHHSCCSEE---E
T ss_pred EEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEe-cCCC---EEEEEEecchHHH-HHHHHHHHHHHhcCCCcE---E
Confidence 45677776 5899999999999999999986432 1222 1236665432211 012233444433321100 1
Q ss_pred CCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEEE
Q 013389 112 SFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAK 148 (444)
Q Consensus 112 ~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~ 148 (444)
...+...|.|.|. ..||+.+++..+|++.|+||....
T Consensus 370 v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs 409 (446)
T 3tvi_A 370 IHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMID 409 (446)
T ss_dssp EEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred EeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE
Confidence 2245678888886 489999999999999999998544
No 56
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=90.43 E-value=0.76 Score=46.49 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=44.2
Q ss_pred CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEc
Q 013389 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164 (444)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d 164 (444)
+...|.+.-.|+||.+..|+.+|+++|+||...+..+.++.+..++-+..
T Consensus 330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~ 379 (404)
T 1sc6_A 330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEA 379 (404)
T ss_dssp SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEEC
T ss_pred CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCC
Confidence 56789999999999999999999999999999999997777777776654
No 57
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=89.78 E-value=1.2 Score=46.69 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=48.3
Q ss_pred CCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee--CCeEEEEEEEEcCCCCCCCCChHHHHHHH
Q 013389 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIE 181 (444)
Q Consensus 114 ~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~--~~~~~dvf~V~d~~~g~~i~~~~r~~~i~ 181 (444)
...+.|.+.-+|+||.+.+|+..|.++|+||.+.++... ++.+..++.+.++ + +++.+++|+
T Consensus 452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~-----~-~~~~l~~l~ 515 (529)
T 1ygy_A 452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD-----V-PDDVRTAIA 515 (529)
T ss_dssp SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC-----C-CHHHHHHHH
T ss_pred CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC-----C-CHHHHHHHh
Confidence 456788899999999999999999999999999999864 4667667766553 3 345555554
No 58
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=88.81 E-value=0.73 Score=46.80 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=44.0
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCC
Q 013389 32 CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLN 85 (444)
Q Consensus 32 ~~~~t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~ 85 (444)
+.+...|.+.-.|.||.|.+|..+|++.|+||.+-+..|.+.++. .|.|-+
T Consensus 340 ~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y---~~~d~~ 390 (416)
T 3k5p_A 340 RPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGY---LVMEAD 390 (416)
T ss_dssp CSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEE---EEEEEC
T ss_pred CCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEE---EEEEec
Confidence 346789999999999999999999999999999999999999875 445533
No 59
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=87.73 E-value=1.9 Score=44.20 Aligned_cols=105 Identities=7% Similarity=0.148 Sum_probs=71.6
Q ss_pred CCeEEEEEEc---cCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC
Q 013389 245 RSYSVVNVQC---KDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR 321 (444)
Q Consensus 245 ~~~tvv~V~~---~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr 321 (444)
++.+.|+|.+ .+.||.+++|..+|++++++|..- .+... .-.|.|...+-. ...+++.+.|...+...
T Consensus 296 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~~~~--~is~~V~~~d~~-----~~~~~~~~el~~~~~~~ 366 (446)
T 3tvi_A 296 KNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PSGVD--SVSLVIEDCKLD-----GKCDKIIEEIKKQCNPD 366 (446)
T ss_dssp EEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CEETT--EEEEEEEHHHHT-----TTHHHHHHHHHHHSCCS
T ss_pred CCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ecCCC--EEEEEEecchHH-----HHHHHHHHHHHHhcCCC
Confidence 3578899986 699999999999999999999753 22222 234777543211 02344555555544210
Q ss_pred ----CCCceEEEEEec---CCCchHHHHHHHHHHCCceEEEEEe
Q 013389 322 ----ASEGVRLELCME---DRQGLLADVTRTFRENGLNVTRAEV 358 (444)
Q Consensus 322 ----~~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A~i 358 (444)
...-..|.|.+. .+||+.+.+.++|.+.|+||....-
T Consensus 367 ~v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsq 410 (446)
T 3tvi_A 367 SIEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQ 410 (446)
T ss_dssp EEEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred cEEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEe
Confidence 111357778776 5899999999999999999987653
No 60
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=85.02 E-value=0.94 Score=45.92 Aligned_cols=67 Identities=19% Similarity=0.312 Sum_probs=49.0
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC-CceEEEEEEEEcCCCCCCChHHHHHHHHHHhhc
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE-RDEALNIFYVTDEMGNPADPKIIEAVRQKIGLS 394 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~-g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~~ 394 (444)
.+.|-+...|+||-|+++-..|+.+|||+++.+..-. +....=.||| |.. .. ++..+.++-++|...
T Consensus 34 KTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfV-D~e-h~-~d~~v~~AL~eL~~~ 101 (429)
T 1phz_A 34 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT-YLD-KR-TKPVLGSIIKSLRND 101 (429)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE-CBC-GG-GHHHHHHHHHHHHHT
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEE-EEe-eC-CCHHHHHHHHHHHhh
Confidence 4667777789999999999999999999999999644 4457778888 665 33 333344444444443
No 61
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=84.17 E-value=4.3 Score=42.19 Aligned_cols=108 Identities=17% Similarity=0.207 Sum_probs=69.8
Q ss_pred CeEEEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCC-chHHHHHHHHHhhhccCCC
Q 013389 34 TATLVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLT-DESVISYIEQSLETIHYGR 109 (444)
Q Consensus 34 ~~t~V~v~~---~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~-~~~~~~~i~~aL~~~~~~~ 109 (444)
+.+.|+|.+ .+++|.++++.++|++.|++|.-.. ++... ..|.|...+..+.. ..+.++.+.+.|.....
T Consensus 340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~-sse~s---is~~v~~~~~~~~~~~~~~l~~~~~el~~~~~-- 413 (510)
T 2cdq_A 340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA-TSEVS---ISLTLDPSKLWSRELIQQELDHVVEELEKIAV-- 413 (510)
T ss_dssp EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE-EETTE---EEEEECCGGGSSSCCCHHHHHHHHHHHTTTSE--
T ss_pred CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEE-eCCCe---EEEEEechHhhhhhHHHHHHHHHHHHhCCCCe--
Confidence 445677775 6789999999999999999998763 23332 23555432211110 12344445544543100
Q ss_pred CCCCCCceEEEEEEc--CCcchHHHHHHHHHHCCCeEEEE
Q 013389 110 SNSFNGLTALELTGT--DRVGLLSEVFAVLADLQCSVVEA 147 (444)
Q Consensus 110 ~~~~~~~t~i~v~~~--DrpGLl~~i~~vL~~~~~~I~~A 147 (444)
-....+...|.|.|. ..||+.+++..+|++.|+||...
T Consensus 414 v~~~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mI 453 (510)
T 2cdq_A 414 VNLLKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMI 453 (510)
T ss_dssp EEEEEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEE
T ss_pred EEEeCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEE
Confidence 011234567888887 78899999999999999999854
No 62
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=82.95 E-value=1.1 Score=38.81 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=61.2
Q ss_pred CCeEEEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCC
Q 013389 33 PTATLVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGR 109 (444)
Q Consensus 33 ~~~t~V~v~~---~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~ 109 (444)
.+.+.|++.+ +++||..+++.+.|++.|+||.-... +.. -..|.|.+.+ .. ..+.+.|.....
T Consensus 16 ~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~-s~~---~Isf~v~~~~-------~~-~~il~~l~~~~~-- 81 (157)
T 3mah_A 16 DGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVAT-SEV---GVSLTIDNDK-------NL-PDIVRALSDIGD-- 81 (157)
T ss_dssp EEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEEC-CSS---EEEEEESCCT-------TH-HHHHHHHTTTEE--
T ss_pred CCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEe-cCC---EEEEEECChH-------HH-HHHHHHHhccCe--
Confidence 3567888874 47899999999999999999854432 222 1245555321 11 222222322100
Q ss_pred CCCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEEEEE
Q 013389 110 SNSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAK 148 (444)
Q Consensus 110 ~~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~ 148 (444)
-....+...|.+.|. ++||..+++..+|+ |+||....
T Consensus 82 v~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~is 121 (157)
T 3mah_A 82 VTVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMIS 121 (157)
T ss_dssp EEEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEE
T ss_pred EEEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEe
Confidence 011234567788875 68999999999999 99988543
No 63
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=82.03 E-value=4.1 Score=41.28 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=43.4
Q ss_pred CCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEE
Q 013389 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVK 163 (444)
Q Consensus 114 ~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~ 163 (444)
.+.+.|.+.-.|.||.|..|+.+|+++|+||.+-...|.++.+..++-|.
T Consensus 341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~ 390 (416)
T 3k5p_A 341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEAD 390 (416)
T ss_dssp SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEC
T ss_pred CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEec
Confidence 35689999999999999999999999999999988888877766666554
No 64
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=78.79 E-value=1.7 Score=44.39 Aligned_cols=65 Identities=26% Similarity=0.346 Sum_probs=41.8
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCceEEEEEeecC--CceEEEEEEEEcCCCCCCChHHHHHHHHHHhh
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTE--RDEALNIFYVTDEMGNPADPKIIEAVRQKIGL 393 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~~ 393 (444)
.+-+-+...|+||.|++|+.+|.++|++|.+..=.-. ++.......+|. +.....+.+.-++|..
T Consensus 359 ~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th----~~~e~~~~~~~~~~~~ 425 (444)
T 3mtj_A 359 AYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTH----VTLEKNVNAAIAKIEA 425 (444)
T ss_dssp EEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEEC----SEEHHHHHHHHHHHTT
T ss_pred eeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEec----cCCHHHHHHHHHHHhc
Confidence 3678889999999999999999999999988654322 112245555653 2333444555555544
No 65
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=78.39 E-value=4.3 Score=41.46 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=36.5
Q ss_pred CceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEee--CCeEEEEEEEEcC
Q 013389 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDC 165 (444)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~--~~~~~dvf~V~d~ 165 (444)
..+-+.+...|+||.|++|+++|.+++++|.+..-.-. ++..+.++.++..
T Consensus 358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~ 410 (444)
T 3mtj_A 358 TAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHV 410 (444)
T ss_dssp EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECS
T ss_pred eeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEecc
Confidence 45677888999999999999999999999987654322 1223566677763
No 66
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=78.22 E-value=4 Score=42.49 Aligned_cols=136 Identities=14% Similarity=0.173 Sum_probs=81.0
Q ss_pred CCeEEEEEEc---cCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCC-CHHHHHHHHHHHHHHhcc
Q 013389 245 RSYSVVNVQC---KDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPIS-SEPERQRVIQCLEAAVGR 320 (444)
Q Consensus 245 ~~~tvv~V~~---~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~-~~~~~~~l~~~L~~al~r 320 (444)
++.+.|+|.+ .++||++++|..+|+++|++|..- .|. ...-.|.|...+..... ..+..+++.+.|.. +..
T Consensus 339 ~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I--~ss--e~sis~~v~~~~~~~~~~~~~~l~~~~~el~~-~~~ 413 (510)
T 2cdq_A 339 RNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVV--ATS--EVSISLTLDPSKLWSRELIQQELDHVVEELEK-IAV 413 (510)
T ss_dssp EEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEE--EEE--TTEEEEEECCGGGSSSCCCHHHHHHHHHHHTT-TSE
T ss_pred CCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEE--EeC--CCeEEEEEechHhhhhhHHHHHHHHHHHHhCC-CCe
Confidence 3678899986 789999999999999999999875 232 22234666543211110 11223333333321 000
Q ss_pred --CCCCceEEEEEec--CCCchHHHHHHHHHHCCceEEEEEeecCCceEEEE-EEEEcCCCCCCChHHHHHHHHHHh
Q 013389 321 --RASEGVRLELCME--DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNI-FYVTDEMGNPADPKIIEAVRQKIG 392 (444)
Q Consensus 321 --r~~~~~~lev~~~--DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~-FyV~d~~g~~v~~~~~~~lr~~l~ 392 (444)
-...-..|.|.+. ..||+.+.+..+|.+.|+||.... +|....+. |.|...+ ..+.+..|-++|.
T Consensus 414 v~~~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIs---qGsSei~Is~vV~~~d----~~~Av~aLH~~f~ 483 (510)
T 2cdq_A 414 VNLLKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMIS---QGASKVNISFIVNEAE----AEGCVQALHKSFF 483 (510)
T ss_dssp EEEEEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEE---ECTTCSEEEEEEEHHH----HHHHHHHHHHHHH
T ss_pred EEEeCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEE---ecCCcceEEEEEeHHH----HHHHHHHHHHHHh
Confidence 0111345777776 778999999999999999998763 33333333 4443221 0145566666665
No 67
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=76.50 E-value=6 Score=37.90 Aligned_cols=49 Identities=14% Similarity=0.113 Sum_probs=39.7
Q ss_pred ceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC-CeEEEEEEEEc
Q 013389 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD 164 (444)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~-~~~~dvf~V~d 164 (444)
.|.|.+..+|+||-|+++-++|+.+|+|+..-+..-.. +...-.|||.-
T Consensus 200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~ 249 (283)
T 2qmx_A 200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADF 249 (283)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEE
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEE
Confidence 56777778899999999999999999999987777543 33455788865
No 68
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=72.76 E-value=2.5 Score=36.48 Aligned_cols=126 Identities=14% Similarity=0.132 Sum_probs=72.3
Q ss_pred CeEEEEEEc---cCCccHHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcc-C
Q 013389 246 SYSVVNVQC---KDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGR-R 321 (444)
Q Consensus 246 ~~tvv~V~~---~DRpGLL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~r-r 321 (444)
+.+.|+|.+ +++||..+++..+|++.|+||..-. +... .-.|.|.+.+ ..+++.+.|.+ ... .
T Consensus 17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~--~s~~--~Isf~v~~~~--------~~~~il~~l~~-~~~v~ 83 (157)
T 3mah_A 17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVA--TSEV--GVSLTIDNDK--------NLPDIVRALSD-IGDVT 83 (157)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEE--CCSS--EEEEEESCCT--------THHHHHHHHTT-TEEEE
T ss_pred CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEE--ecCC--EEEEEECChH--------HHHHHHHHHhc-cCeEE
Confidence 567888874 5899999999999999999996532 3222 3346665321 23333344322 100 0
Q ss_pred -CCCceEEEEEec---CCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHHHHHHHHHh
Q 013389 322 -ASEGVRLELCME---DRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKIIEAVRQKIG 392 (444)
Q Consensus 322 -~~~~~~lev~~~---DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~~~lr~~l~ 392 (444)
...-..+.|.+. ++||+.+++..+|. |++|....-.|. ...=.|.|...+ .++.+..|.++|.
T Consensus 84 ~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~S--e~~is~vv~~~d----~~~a~~~Lh~~f~ 150 (157)
T 3mah_A 84 VDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGS--NYNVSVLVKAED----KKKALIALSNKLF 150 (157)
T ss_dssp EEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSS--SSCEEEEEEGGG----HHHHHHHHHHHHH
T ss_pred EeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCC--CCEEEEEEcHHH----HHHHHHHHHHHHh
Confidence 011345666654 68999999999999 888877542222 122334453221 1244556666654
No 69
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=70.79 E-value=27 Score=34.01 Aligned_cols=51 Identities=14% Similarity=0.091 Sum_probs=37.5
Q ss_pred eEEEEEEc--CCcchHHHHHHHHHHCCCeEEEEEEEeeCCe-EEEEEEEEcCCCCC
Q 013389 117 TALELTGT--DRVGLLSEVFAVLADLQCSVVEAKVWTHNGR-IASLIYVKDCNSGS 169 (444)
Q Consensus 117 t~i~v~~~--DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~-~~dvf~V~d~~~g~ 169 (444)
+.+.+..+ |+||-|+++-++|+.+|+|...-+..-..++ ..=.|||.- .|.
T Consensus 207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~--eg~ 260 (329)
T 3luy_A 207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTL--DAA 260 (329)
T ss_dssp EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEE--SSC
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEE--eCC
Confidence 44444554 7999999999999999999998777755443 344677765 355
No 70
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=68.18 E-value=10 Score=36.79 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=38.4
Q ss_pred CceEEEEEEc-CCcchHHHHHHHHHHCCCeEEEEEEEeeCC-eEEEEEEEEc
Q 013389 115 GLTALELTGT-DRVGLLSEVFAVLADLQCSVVEAKVWTHNG-RIASLIYVKD 164 (444)
Q Consensus 115 ~~t~i~v~~~-DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~-~~~dvf~V~d 164 (444)
..|.|.+..+ |+||-|+++-++|+.+|+|...-+..-..+ -..=.|||.-
T Consensus 200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~ 251 (313)
T 3mwb_A 200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDA 251 (313)
T ss_dssp EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEE
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEE
Confidence 4577778885 999999999999999999998777764332 2234677765
No 71
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=64.95 E-value=31 Score=30.07 Aligned_cols=92 Identities=13% Similarity=0.173 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhCCeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHhccC----CCCceEEEEEec--
Q 013389 260 LLFDVVCTLTDMEYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCLEAAVGRR----ASEGVRLELCME-- 333 (444)
Q Consensus 260 LL~~i~~~L~~~~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L~~al~rr----~~~~~~lev~~~-- 333 (444)
+-.-+..++.. |+.+.+..+...|+.-.-..||....| ++ =+.++.+.+.|.+.|++. .+..|.|||+++
T Consensus 14 v~~li~p~~~~-g~eLvdve~~~~g~~~~LrV~ID~~~g--i~-lddC~~vSr~is~~LD~~~~d~i~~~Y~LEVSSPGl 89 (164)
T 1ib8_A 14 VREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEG--IT-LNDTADLTEMISPVLDTIKPDPFPEQYFLEITSPGL 89 (164)
T ss_dssp HHHHHHHHHCS-SSEEEEEEEEEETTEEEEEEEEECSSC--CC-HHHHHHHHHHHGGGTTTCCSCCCCSCEEEEEECCSS
T ss_pred HHHHHHHHHcC-CcEEEEEEEEecCCCcEEEEEEECCCC--CC-HHHHHHHHHHHHHHhccccccCCCCCeEEEEeCCCC
Confidence 34445566777 999999999887765444456665544 33 237999999999999832 345799999987
Q ss_pred CCCchHHHHHHHHHHCCceEEEEEeec
Q 013389 334 DRQGLLADVTRTFRENGLNVTRAEVST 360 (444)
Q Consensus 334 DRpGLL~~Itr~l~e~gl~I~~A~i~T 360 (444)
||| |.....+-+-.|-.| +|.+
T Consensus 90 dRp--L~~~~df~r~~G~~V---~V~l 111 (164)
T 1ib8_A 90 ERP--LKTKDAVAGAVGKYI---HVGL 111 (164)
T ss_dssp SSC--CSSHHHHHHHCSEEE---EEEC
T ss_pred CCC--CCCHHHHHHhCCcEE---EEEE
Confidence 565 666666667777554 4555
No 72
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=62.72 E-value=22 Score=33.60 Aligned_cols=49 Identities=14% Similarity=0.063 Sum_probs=35.4
Q ss_pred eEEEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEe-cC-CeEEEEEEEEeC
Q 013389 35 ATLVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISS-DG-RFFMDVFHVTDL 84 (444)
Q Consensus 35 ~t~V~v~~---~dr~Gll~~i~~vL~~~~l~I~~A~i~t-~~-g~~~dvF~V~d~ 84 (444)
.|-+.+.. +|+||-|.++.+.|+..|+|..+-.-.- .+ -|-. +|+|.-.
T Consensus 186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y-~FfiD~e 239 (267)
T 2qmw_A 186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMY-RFFVQAD 239 (267)
T ss_dssp CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCE-EEEEEES
T ss_pred eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccE-EEEEEEe
Confidence 34444444 8999999999999999999999877652 22 2433 4777654
No 73
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=36.63 E-value=70 Score=25.46 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=35.2
Q ss_pred ceEEEEEecCCCchHHHHHHHHHHCCce-EEEEEeecCCceEEEEEEEEcCCCCCC
Q 013389 325 GVRLELCMEDRQGLLADVTRTFRENGLN-VTRAEVSTERDEALNIFYVTDEMGNPA 379 (444)
Q Consensus 325 ~~~lev~~~DRpGLL~~Itr~l~e~gl~-I~~A~i~T~g~~a~d~FyV~d~~g~~v 379 (444)
...+.+...| +.+..+.+.++|+. +...-.....+. - ||+.|++|+.+
T Consensus 67 ~~~l~f~v~d----vd~~~~~l~~~G~~~~~~~p~~~~~G~--~-~~~~DPdGn~i 115 (128)
T 3g12_A 67 SLQLGFQITD----LEKTVQELVKIPGAMCILDPTDMPDGK--K-AIVLDPDGHSI 115 (128)
T ss_dssp SEEEEEEESC----HHHHHHHHTTSTTCEEEEEEEECC-CE--E-EEEECTTCCEE
T ss_pred ceEEEEEeCC----HHHHHHHHHHCCCceeccCceeCCCcc--E-EEEECCCCCEE
Confidence 5667888888 88899999999999 765333332222 2 99999999875
No 74
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=36.01 E-value=1.1e+02 Score=24.33 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=35.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCce-EEEEEEEecCCeEEEEEEEEeCCCCCC
Q 013389 34 TATLVKVDSARRHGILLEAVQVLTDLNLL-IKKAYISSDGRFFMDVFHVTDLNGNKL 89 (444)
Q Consensus 34 ~~t~V~v~~~dr~Gll~~i~~vL~~~~l~-I~~A~i~t~~g~~~dvF~V~d~~g~~~ 89 (444)
..+.+.+...| +.++.+-|.+.|.. +...-.....|+. |++.|++|+.+
T Consensus 66 ~~~~l~f~v~d----vd~~~~~l~~~G~~~~~~~p~~~~~G~~---~~~~DPdGn~i 115 (128)
T 3g12_A 66 PSLQLGFQITD----LEKTVQELVKIPGAMCILDPTDMPDGKK---AIVLDPDGHSI 115 (128)
T ss_dssp CSEEEEEEESC----HHHHHHHHTTSTTCEEEEEEEECC-CEE---EEEECTTCCEE
T ss_pred CceEEEEEeCC----HHHHHHHHHHCCCceeccCceeCCCccE---EEEECCCCCEE
Confidence 45667777777 88889999999999 7654333444433 78999999864
No 75
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=35.55 E-value=2e+02 Score=29.67 Aligned_cols=121 Identities=17% Similarity=0.144 Sum_probs=76.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccC----C--
Q 013389 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY----G-- 108 (444)
Q Consensus 36 t~V~v~~~dr~Gll~~i~~vL~~~~l~I~~A~i~-t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~----~-- 108 (444)
..+.|.-+||||-|.+++.+|. +-||.+-.-. ++.+. ..++....-.+ ..+-++.|.+.|..... .
T Consensus 339 ~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~~~~~~~-~~~~~~~e~~~----~~~~~~~~~~~l~~~g~~~~~~~~ 411 (514)
T 1tdj_A 339 ALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYRFADAKN-ACIFVGVRLSR----GLEERKEILQMLNDGGYSVVDLSD 411 (514)
T ss_dssp EEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEECCCSSB-CEEEEEEECSS----THHHHHHHHHHHTSSSCEEETTSS
T ss_pred ccccccCCCCCchHHHHHHHhC--CCceEEEEeeccCCCe-EEEEEEEEeCC----cHHHHHHHHHHHHhCCCCeEECCC
Confidence 5677888999999999999998 6888875543 22222 23343333222 03455667777765531 1
Q ss_pred --------------CCCCCCCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC---CeEEEEEEEEc
Q 013389 109 --------------RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN---GRIASLIYVKD 164 (444)
Q Consensus 109 --------------~~~~~~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~---~~~~dvf~V~d 164 (444)
++....+-..+.+.=|.|||-|.+.-..|.. ++||.--+-..++ ||++.-|.|-+
T Consensus 412 ~~~~~~h~~~~~g~~~~~~~~e~~~~~~fpe~~gal~~fl~~~~~-~~~i~~~~yr~~g~~~~~~~~~~~~~~ 483 (514)
T 1tdj_A 412 DEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGT-YWNISLFHYRSHGTDYGRVLAAFELGD 483 (514)
T ss_dssp CHHHHHTGGGTCCCCCSSCCCCEEEEEECCCCTTHHHHHHHHHCS-CCCCCEEECBCTTTCSSCEEEEEC---
T ss_pred CHHHHHHHHHhhCCcCccCCCceEEEEeCCCCCCHHHHHHHhcCC-CceEEEEeecCCCCCcccEEEEEEcCC
Confidence 1111223456777889999999988888865 6888766655554 68887787765
No 76
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=34.59 E-value=1.7e+02 Score=23.50 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=46.0
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHhC---CceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhc
Q 013389 33 PTATLVKVDSARRHGILLEAVQVLTDL---NLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETI 105 (444)
Q Consensus 33 ~~~t~V~v~~~dr~Gll~~i~~vL~~~---~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~ 105 (444)
+-.+.++|.+.+.+++...|..++..+ +..+ ..+-|+.|.+.--...|.- ++.+.++.|-++|...
T Consensus 34 Pc~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v------~S~eQv~aiY~~L~~~ 102 (109)
T 1rwu_A 34 PTPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINA------THIEQVETLYEELGKI 102 (109)
T ss_dssp CCCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECC------SSHHHHHHHHHHHSCS
T ss_pred CCCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEE------CCHHHHHHHHHHHhcC
Confidence 346899999999999999999999987 7777 4455566666653333332 3345556666677543
No 77
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=34.04 E-value=54 Score=33.09 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=47.1
Q ss_pred CCceEEEEEEcCCcchHHHHHHHHHHCCCeEEEEEEEeeC-CeEEEEEEEEcCCCCCCCCChHHHHHHHHHHHHH
Q 013389 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV 187 (444)
Q Consensus 114 ~~~t~i~v~~~DrpGLl~~i~~vL~~~~~~I~~A~i~T~~-~~~~dvf~V~d~~~g~~i~~~~r~~~i~~~L~~v 187 (444)
...|.|.+..+|+||-|+++-++|+.+|+|+..-+..-.. +...=.|||.- . . . +..+.+.+-+.|...
T Consensus 32 ~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~--e-h-~-~d~~v~~AL~eL~~~ 101 (429)
T 1phz_A 32 NGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL--D-K-R-TKPVLGSIIKSLRND 101 (429)
T ss_dssp SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB--C-G-G-GHHHHHHHHHHHHHT
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEE--e-e-C-CCHHHHHHHHHHHhh
Confidence 4568888888999999999999999999999876666433 33445677754 2 2 2 233444444455544
No 78
>3r6a_A Uncharacterized protein; PSI biology, structural genomics, NEW YORK structural genomi research consortium, putative glyoxalase I; 1.76A {Methanosarcina mazei}
Probab=33.37 E-value=92 Score=25.47 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=34.9
Q ss_pred EEEEEecCCCchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCC
Q 013389 327 RLELCMEDRQGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPAD 380 (444)
Q Consensus 327 ~lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~ 380 (444)
.+.+...| +.++.+.|.+.|+.+...-..+..+ -.||+.|++|+.+.
T Consensus 68 hl~f~V~d----~d~~~~~l~~~G~~v~~~p~~~~~G---~~~~~~DPdG~~ie 114 (144)
T 3r6a_A 68 QATFLVDS----LDKFKTFLEENGAEIIRGPSKVPTG---RNMTVRHSDGSVIE 114 (144)
T ss_dssp CEEEEESC----HHHHHHHHHHTTCEEEEEEEEETTE---EEEEEECTTSCEEE
T ss_pred EEEEEeCC----HHHHHHHHHHcCCEEecCCccCCCc---eEEEEECCCCCEEE
Confidence 35555566 7788889999999987765554444 36899999998763
No 79
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=31.99 E-value=24 Score=35.93 Aligned_cols=104 Identities=20% Similarity=0.279 Sum_probs=62.7
Q ss_pred CeEEEEEEe---CCCccHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhhhccCCCC
Q 013389 34 TATLVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS 110 (444)
Q Consensus 34 ~~t~V~v~~---~dr~Gll~~i~~vL~~~~l~I~~A~i~t~~g~~~dvF~V~d~~g~~~~~~~~~~~i~~aL~~~~~~~~ 110 (444)
+.+.|++.+ .+.+|.++++.++|++.|++|.-.. ++... ..|.|...+.........++.+.+.|..... -
T Consensus 307 ~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~-ss~~s---is~~v~~~~~~~~~~~~~~~~~~~el~~~~~--v 380 (449)
T 2j0w_A 307 NQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLIT-TSEVS---VALTLDTTGSTSTGDTLLTQSLLMELSALCR--V 380 (449)
T ss_dssp EEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEE-EETTE---EEEEECCCCCSSTTCCSSCHHHHHHHHHHSC--E
T ss_pred CEEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEE-eCCCe---EEEEEeccccchhhHHHHHHHHHHHhccCCe--E
Confidence 345566665 4678999999999999999986554 23221 2355554322110011123334444432100 0
Q ss_pred CCCCCceEEEEEEc---CCcchHHHHHHHHHHCCCeEE
Q 013389 111 NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVV 145 (444)
Q Consensus 111 ~~~~~~t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~ 145 (444)
....+...|.|.|. ..||+.+++..+|++ +||.
T Consensus 381 ~~~~~~a~vsvVG~gm~~~~gv~~~~f~aL~~--ini~ 416 (449)
T 2j0w_A 381 EVEEGLALVALIGNDLSKACGVGKEVFGVLEP--FNIR 416 (449)
T ss_dssp EEEEEEEEEEEEESSCTTSSSHHHHHHSSCTT--SCCC
T ss_pred EEeCCeEEEEEECCCccccccHHHHHHHHHhC--CCeE
Confidence 12235678899987 588999999999966 7776
No 80
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=25.78 E-value=88 Score=25.01 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=28.5
Q ss_pred HHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCC
Q 013389 339 LADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPA 379 (444)
Q Consensus 339 L~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v 379 (444)
+..+.+.|.+.|+.+...-....++ ..||+.|++|+.+
T Consensus 109 ~~~~~~~l~~~G~~~~~~~~~~~~g---~~~~~~DPdG~~i 146 (156)
T 3kol_A 109 FDRAVTVIGENKIAIAHGPVTRPTG---RGVYFYDPDGFMI 146 (156)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEC-CC---EEEEEECTTSCEE
T ss_pred HHHHHHHHHHCCCccccCceecCCc---cEEEEECCCCCEE
Confidence 6777888999999997655544333 2899999999865
No 81
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=24.39 E-value=1e+02 Score=24.15 Aligned_cols=51 Identities=12% Similarity=0.207 Sum_probs=34.2
Q ss_pred EEEEecCCCchHHHHHHHHHHCCceEEEEEeec-CCce-EEEEEEEEcCCCCCC
Q 013389 328 LELCMEDRQGLLADVTRTFRENGLNVTRAEVST-ERDE-ALNIFYVTDEMGNPA 379 (444)
Q Consensus 328 lev~~~DRpGLL~~Itr~l~e~gl~I~~A~i~T-~g~~-a~d~FyV~d~~g~~v 379 (444)
+-+...++ .=+.++.+.|.+.|+.+...-... .|.. ..-.||+.|++|+.+
T Consensus 71 ~~~~~~~~-~d~~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~~~~DPdGn~i 123 (135)
T 3rri_A 71 FGITFRDK-KHFDNLYKLAKQRGIPFYHDLSRRFEGLIEEHETFFLIDPSNNLL 123 (135)
T ss_dssp EEEECSSH-HHHHHHHHHHHHTTCCEEEEEEEESTTSTTCEEEEEEECTTCCEE
T ss_pred EEEEEcCh-HhHHHHHHHHHHcCCceecCcccccCCCCCceEEEEEECCCCCEE
Confidence 33444443 347778888999999987655543 3322 335799999999875
No 82
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=21.46 E-value=52 Score=27.66 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=31.1
Q ss_pred eEEEEEEc---CCcchHHHHHHHHHHCCCeEEEEEEEeeCCeEEEEEEEEc
Q 013389 117 TALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164 (444)
Q Consensus 117 t~i~v~~~---DrpGLl~~i~~vL~~~~~~I~~A~i~T~~~~~~dvf~V~d 164 (444)
-.|+|.++ |-.|+++.+++.|++.|++|... .| +.-|-++|..
T Consensus 63 r~i~v~~~l~~~~vGilA~is~pLA~agIsif~i--St---y~tD~IlVp~ 108 (134)
T 1zhv_A 63 SCFKFQGPFAFDETGIVLSVISPLSTNGIGIFVV--ST---FDGDHLLVRS 108 (134)
T ss_dssp EEEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEE--EC---SSCEEEEEEG
T ss_pred EEEEEecCCCccHHHHHHHHHHHHHhCCCCeEEE--Ee---ccccEEEEeH
Confidence 35555544 78899999999999999998753 33 3346666765
No 83
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=21.23 E-value=3.2e+02 Score=21.86 Aligned_cols=62 Identities=13% Similarity=0.114 Sum_probs=44.5
Q ss_pred CeEEEEEEccCCccHHHHHHHHHHhC---CeeEEEEEEEecCCEEEEEEEEEeCCCCCCCCHHHHHHHHHHH
Q 013389 246 SYSVVNVQCKDRTKLLFDVVCTLTDM---EYVVFHATINTAGERAYLEFYIRHIDGTPISSEPERQRVIQCL 314 (444)
Q Consensus 246 ~~tvv~V~~~DRpGLL~~i~~~L~~~---~~nI~~A~I~T~g~~a~d~F~V~~~~g~~l~~~~~~~~l~~~L 314 (444)
....+.|.+++.+++...|..++..+ ++.+ .-+-++.|.+..-+..|+ +.+.++++.|=++|
T Consensus 35 c~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~------v~S~eQv~aiY~~L 99 (109)
T 1rwu_A 35 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITIN------ATHIEQVETLYEEL 99 (109)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEEC------CSSHHHHHHHHHHH
T ss_pred CCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEE------ECCHHHHHHHHHHH
Confidence 35788999999999999999999988 7777 446666777777655554 22344555554444
No 84
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=20.54 E-value=3e+02 Score=21.23 Aligned_cols=86 Identities=6% Similarity=0.122 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhccCCCCceEEEEEecCC---CchHHHHHHHHHHCCceEEEEEeecCCceEEEEEEEEcCCCCCCChHHH
Q 013389 308 QRVIQCLEAAVGRRASEGVRLELCMEDR---QGLLADVTRTFRENGLNVTRAEVSTERDEALNIFYVTDEMGNPADPKII 384 (444)
Q Consensus 308 ~~l~~~L~~al~rr~~~~~~lev~~~DR---pGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~FyV~d~~g~~v~~~~~ 384 (444)
..++..|.+....+ +.+..+.|.=... .-+++++++.| ...+||..+.|...++.....+.|.- .|. ++..+
T Consensus 4 ~~~~~~~~~L~~~~-~~~~lvrL~f~g~~~~~PvIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v~l-~G~--~~~~~ 78 (98)
T 3ced_A 4 DDFETSLTELEPLE-KDAYIVRLVFAGSTTTEPIVSSLSTAY-DIKINILEANIKNTKNGTVGFLVLHI-PYI--SSVDF 78 (98)
T ss_dssp HHHHHHHHHTCSCC-TTCEEEEEEEEEESCHHHHHHHHHHHH-TCCCEEEEEEEEEETTEEEEEEEEEE-SCC--CHHHH
T ss_pred hhHHHHHHHhhccC-CCCEEEEEEECCCccCchHHHHHHHHH-CCcEEEEEEEeEEeCCEeEEEEEEEE-eCC--CHHHH
Confidence 34555555533332 2333444443322 45677777776 47889999999999999999999964 352 23445
Q ss_pred HHHHHHHhhccccc
Q 013389 385 EAVRQKIGLSNLKV 398 (444)
Q Consensus 385 ~~lr~~l~~~~~~~ 398 (444)
++..+.|.+.-+.|
T Consensus 79 ~~ai~~L~~~~v~v 92 (98)
T 3ced_A 79 GKFEKELIERQVKM 92 (98)
T ss_dssp HHHHHHHHHTTCEE
T ss_pred HHHHHHHHHCCCEE
Confidence 55556655543333
No 85
>3zw5_A Glyoxalase domain-containing protein 5; lyase; 1.60A {Homo sapiens}
Probab=20.39 E-value=76 Score=25.74 Aligned_cols=42 Identities=12% Similarity=0.208 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHCCceEEEEEeecCCce-EEEEEEEEcCCCCCC
Q 013389 338 LLADVTRTFRENGLNVTRAEVSTERDE-ALNIFYVTDEMGNPA 379 (444)
Q Consensus 338 LL~~Itr~l~e~gl~I~~A~i~T~g~~-a~d~FyV~d~~g~~v 379 (444)
=|.++.+.|.+.|+.+........+.. ..-.||+.|++|..+
T Consensus 100 dl~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~~DPdGn~i 142 (147)
T 3zw5_A 100 PLEEMIQHLKACDVPIEEGPVPRTGAKGPIMSIYFRDPDRNLI 142 (147)
T ss_dssp CHHHHHHHHHHTTCCCCEEEEEEEETTEEEEEEEEECTTCCEE
T ss_pred CHHHHHHHHHHcCCceeeCcccccCCCCceEEEEEECCCCCEE
Confidence 367778889999999876655444443 345799999999865
Done!