Query 013390
Match_columns 444
No_of_seqs 198 out of 2337
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:22:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02487 zeta-carotene desatur 100.0 4.3E-45 9.4E-50 369.3 38.5 396 1-402 129-554 (569)
2 TIGR02732 zeta_caro_desat caro 100.0 9.4E-43 2E-47 350.2 37.6 392 1-398 53-474 (474)
3 PLN02612 phytoene desaturase 100.0 2.4E-41 5.2E-46 346.3 39.3 390 1-403 147-550 (567)
4 TIGR02731 phytoene_desat phyto 100.0 2.9E-38 6.4E-43 318.4 37.6 384 1-398 53-453 (453)
5 TIGR03467 HpnE squalene-associ 100.0 8.8E-38 1.9E-42 312.3 37.3 374 1-399 42-419 (419)
6 PRK07233 hypothetical protein; 100.0 5.8E-33 1.3E-37 278.9 35.1 375 1-402 52-432 (434)
7 COG1232 HemY Protoporphyrinoge 100.0 2.6E-30 5.7E-35 251.3 27.5 361 2-398 56-443 (444)
8 PRK12416 protoporphyrinogen ox 100.0 5.2E-30 1.1E-34 259.1 29.2 369 2-402 61-462 (463)
9 TIGR00562 proto_IX_ox protopor 100.0 7.4E-29 1.6E-33 251.0 31.2 363 2-401 60-460 (462)
10 COG3349 Uncharacterized conser 100.0 4.5E-30 9.7E-35 248.3 20.9 396 1-403 54-465 (485)
11 PRK07208 hypothetical protein; 100.0 4.7E-28 1E-32 246.0 31.6 382 1-417 57-474 (479)
12 PLN02576 protoporphyrinogen ox 100.0 3.6E-28 7.8E-33 247.9 28.7 367 2-403 67-489 (496)
13 PRK11883 protoporphyrinogen ox 100.0 7.7E-28 1.7E-32 242.9 28.8 364 2-399 56-450 (451)
14 PLN02268 probable polyamine ox 99.9 5.5E-24 1.2E-28 213.6 25.3 281 92-401 130-434 (435)
15 PLN02529 lysine-specific histo 99.9 2.3E-22 4.9E-27 208.1 25.4 290 92-403 285-600 (738)
16 PLN03000 amine oxidase 99.9 3.8E-22 8.3E-27 207.0 25.7 231 154-403 374-625 (881)
17 PLN02676 polyamine oxidase 99.9 4.2E-22 9E-27 200.9 20.8 293 92-403 155-475 (487)
18 PLN02328 lysine-specific histo 99.9 1.3E-20 2.8E-25 195.8 28.9 232 153-403 429-681 (808)
19 PLN02568 polyamine oxidase 99.9 3.5E-21 7.7E-26 195.5 23.6 296 95-402 160-536 (539)
20 TIGR02733 desat_CrtD C-3',4' d 99.9 3.6E-20 7.9E-25 188.7 30.1 293 93-400 167-491 (492)
21 PLN02976 amine oxidase 99.9 7.1E-21 1.5E-25 202.6 23.5 260 125-405 904-1190(1713)
22 PF01593 Amino_oxidase: Flavin 99.9 2.1E-21 4.6E-26 194.5 16.7 296 91-398 138-450 (450)
23 COG1231 Monoamine oxidase [Ami 99.9 1.3E-20 2.9E-25 179.3 18.4 231 157-402 205-448 (450)
24 TIGR02734 crtI_fam phytoene de 99.8 6.6E-19 1.4E-23 180.0 26.9 295 93-405 159-496 (502)
25 KOG1276 Protoporphyrinogen oxi 99.8 9.7E-19 2.1E-23 163.8 19.6 358 10-398 79-490 (491)
26 TIGR02730 carot_isom carotene 99.8 6.5E-18 1.4E-22 172.0 26.7 294 94-402 168-493 (493)
27 COG2907 Predicted NAD/FAD-bind 99.8 1.9E-16 4E-21 144.6 20.8 225 7-259 71-308 (447)
28 KOG0029 Amine oxidase [Seconda 99.7 2.2E-16 4.8E-21 157.8 20.4 231 155-403 213-461 (501)
29 KOG0685 Flavin-containing amin 99.7 1.6E-16 3.4E-21 151.5 15.8 241 154-403 216-493 (498)
30 KOG4254 Phytoene desaturase [C 99.6 1.3E-13 2.7E-18 130.4 24.2 238 152-402 255-547 (561)
31 COG3380 Predicted NAD/FAD-depe 99.6 1E-15 2.2E-20 135.5 8.0 221 158-401 105-331 (331)
32 COG1233 Phytoene dehydrogenase 99.5 2.2E-13 4.9E-18 137.9 18.8 287 93-401 164-483 (487)
33 PRK13977 myosin-cross-reactive 99.5 2.6E-11 5.7E-16 121.7 31.5 318 65-400 141-523 (576)
34 PTZ00363 rab-GDP dissociation 99.4 4.4E-11 9.5E-16 118.7 18.7 197 8-218 83-288 (443)
35 PF00996 GDI: GDP dissociation 98.9 6.1E-08 1.3E-12 95.3 17.3 197 4-215 80-284 (438)
36 PF06100 Strep_67kDa_ant: Stre 98.8 4E-07 8.6E-12 89.2 20.2 313 64-394 121-499 (500)
37 KOG1439 RAB proteins geranylge 98.4 1.8E-06 4E-11 81.5 10.1 200 4-217 80-286 (440)
38 PF07156 Prenylcys_lyase: Pren 98.3 8.6E-05 1.9E-09 72.0 19.1 117 93-222 67-189 (368)
39 TIGR02352 thiamin_ThiO glycine 98.2 0.00012 2.6E-09 70.8 18.8 195 162-399 137-335 (337)
40 PF01266 DAO: FAD dependent ox 98.2 6.1E-05 1.3E-09 73.2 16.3 63 162-227 147-209 (358)
41 PRK00711 D-amino acid dehydrog 97.9 0.0013 2.9E-08 65.7 20.7 57 163-221 202-258 (416)
42 TIGR01373 soxB sarcosine oxida 97.6 0.0081 1.8E-07 59.8 20.7 196 164-399 185-384 (407)
43 COG5044 MRS6 RAB proteins gera 97.6 0.00063 1.4E-08 64.0 11.0 195 4-217 81-281 (434)
44 TIGR03197 MnmC_Cterm tRNA U-34 97.6 0.0041 9E-08 61.4 17.5 56 162-221 135-191 (381)
45 TIGR01377 soxA_mon sarcosine o 97.5 0.029 6.4E-07 55.2 22.4 55 163-220 146-200 (380)
46 PRK10015 oxidoreductase; Provi 97.4 0.027 5.8E-07 56.5 21.0 55 164-220 110-164 (429)
47 TIGR03329 Phn_aa_oxid putative 97.4 0.0069 1.5E-07 61.4 16.3 55 163-221 184-238 (460)
48 KOG4405 GDP dissociation inhib 97.4 0.0031 6.8E-08 60.1 12.3 159 53-216 178-341 (547)
49 TIGR02032 GG-red-SF geranylger 97.3 0.031 6.7E-07 52.6 19.3 55 164-220 93-148 (295)
50 PRK10157 putative oxidoreducta 97.3 0.014 3E-07 58.6 16.8 55 164-220 110-164 (428)
51 PRK12409 D-amino acid dehydrog 97.2 0.053 1.2E-06 54.0 19.9 57 163-221 198-259 (410)
52 PRK11259 solA N-methyltryptoph 97.1 0.091 2E-06 51.6 20.8 56 163-221 150-205 (376)
53 COG0644 FixC Dehydrogenases (f 97.1 0.12 2.6E-06 51.2 21.7 56 164-220 97-152 (396)
54 PF03486 HI0933_like: HI0933-l 96.9 0.0029 6.2E-08 62.7 8.1 64 153-218 100-164 (409)
55 KOG2820 FAD-dependent oxidored 96.9 0.044 9.5E-07 51.5 15.0 61 165-226 156-217 (399)
56 PRK06847 hypothetical protein; 96.8 0.1 2.3E-06 51.2 18.4 55 163-220 108-163 (375)
57 PLN02697 lycopene epsilon cycl 96.8 0.58 1.3E-05 48.1 23.6 55 163-220 193-248 (529)
58 TIGR03377 glycerol3P_GlpA glyc 96.7 0.075 1.6E-06 54.7 16.7 58 162-221 128-191 (516)
59 TIGR03378 glycerol3P_GlpB glyc 96.7 0.0061 1.3E-07 60.0 7.9 64 162-227 263-329 (419)
60 TIGR00031 UDP-GALP_mutase UDP- 96.5 0.0045 9.8E-08 60.5 6.1 117 96-223 129-250 (377)
61 PRK01747 mnmC bifunctional tRN 96.5 0.16 3.4E-06 54.1 18.2 64 154-221 398-464 (662)
62 PRK08773 2-octaprenyl-3-methyl 96.5 0.2 4.3E-06 49.6 17.5 55 163-220 114-169 (392)
63 COG0665 DadA Glycine/D-amino a 96.4 0.37 8.1E-06 47.4 19.2 57 163-222 157-214 (387)
64 COG2081 Predicted flavoprotein 96.4 0.012 2.6E-07 56.6 7.9 107 95-217 55-164 (408)
65 COG2509 Uncharacterized FAD-de 96.4 0.01 2.2E-07 57.9 7.1 55 164-220 175-230 (486)
66 PRK07190 hypothetical protein; 96.3 0.89 1.9E-05 46.4 21.2 60 164-225 111-171 (487)
67 TIGR01984 UbiH 2-polyprenyl-6- 96.2 0.31 6.7E-06 48.0 17.2 60 163-225 106-168 (382)
68 PLN02463 lycopene beta cyclase 96.2 1.3 2.9E-05 44.6 21.5 53 163-219 115-168 (447)
69 PRK06185 hypothetical protein; 96.2 0.45 9.7E-06 47.3 18.1 60 164-225 110-175 (407)
70 TIGR01790 carotene-cycl lycope 96.1 1.6 3.6E-05 42.9 23.6 55 163-220 86-141 (388)
71 TIGR01988 Ubi-OHases Ubiquinon 96.0 0.57 1.2E-05 46.0 17.9 55 163-220 107-163 (385)
72 PRK06834 hypothetical protein; 96.0 0.84 1.8E-05 46.6 19.3 60 163-225 101-162 (488)
73 PLN02464 glycerol-3-phosphate 95.9 0.42 9.2E-06 50.4 17.4 58 162-220 232-296 (627)
74 PRK07045 putative monooxygenas 95.9 0.93 2E-05 44.7 19.0 60 164-224 108-170 (388)
75 PRK07333 2-octaprenyl-6-methox 95.9 0.64 1.4E-05 46.1 17.7 55 163-220 112-167 (403)
76 PRK12266 glpD glycerol-3-phosp 95.8 2.5 5.5E-05 43.4 22.0 56 163-221 156-217 (508)
77 PTZ00383 malate:quinone oxidor 95.8 0.032 6.9E-07 56.8 8.0 57 163-221 212-274 (497)
78 PRK13369 glycerol-3-phosphate 95.8 2.8 6E-05 43.1 22.3 56 162-220 155-215 (502)
79 TIGR03862 flavo_PP4765 unchara 95.8 0.05 1.1E-06 53.1 8.9 63 153-220 77-141 (376)
80 PRK06184 hypothetical protein; 95.7 1.7 3.6E-05 44.7 20.5 60 164-225 111-174 (502)
81 TIGR02485 CobZ_N-term precorri 95.7 0.042 9.2E-07 55.2 8.6 57 162-218 123-181 (432)
82 PRK05714 2-octaprenyl-3-methyl 95.7 1 2.2E-05 44.8 18.3 60 164-226 114-175 (405)
83 COG0579 Predicted dehydrogenas 95.7 0.037 8E-07 54.7 7.7 57 163-221 154-212 (429)
84 COG0654 UbiH 2-polyprenyl-6-me 95.6 1.1 2.4E-05 44.2 18.0 62 163-226 105-169 (387)
85 COG0578 GlpA Glycerol-3-phosph 95.5 3.1 6.7E-05 42.5 20.6 57 163-222 165-227 (532)
86 PRK07494 2-octaprenyl-6-methox 95.4 0.57 1.2E-05 46.2 15.4 55 163-220 112-167 (388)
87 PF13738 Pyr_redox_3: Pyridine 95.4 0.033 7.2E-07 49.4 6.0 52 164-218 84-136 (203)
88 PRK07588 hypothetical protein; 95.4 1 2.2E-05 44.5 16.9 57 164-224 105-163 (391)
89 PRK08274 tricarballylate dehyd 95.3 0.065 1.4E-06 54.4 8.4 56 161-218 130-190 (466)
90 PRK11728 hydroxyglutarate oxid 95.2 0.063 1.4E-06 53.2 7.7 56 162-220 149-204 (393)
91 PF01494 FAD_binding_3: FAD bi 95.2 0.76 1.6E-05 44.3 15.1 62 163-226 112-179 (356)
92 PRK08244 hypothetical protein; 95.1 3.3 7.2E-05 42.4 20.3 59 164-225 102-165 (493)
93 PRK08020 ubiF 2-octaprenyl-3-m 95.1 1.3 2.8E-05 43.7 16.7 59 164-225 114-175 (391)
94 TIGR00275 flavoprotein, HI0933 95.0 0.098 2.1E-06 52.0 8.3 63 155-220 98-160 (400)
95 PRK09126 hypothetical protein; 94.7 1.8 3.9E-05 42.7 16.7 59 164-225 112-173 (392)
96 PF00890 FAD_binding_2: FAD bi 94.7 0.09 2E-06 52.5 7.4 59 161-221 140-204 (417)
97 PRK11101 glpA sn-glycerol-3-ph 94.7 0.11 2.4E-06 53.9 8.1 56 163-220 150-211 (546)
98 PRK06183 mhpA 3-(3-hydroxyphen 94.7 5.3 0.00012 41.4 20.6 59 164-225 115-180 (538)
99 PRK05732 2-octaprenyl-6-methox 94.7 2.9 6.2E-05 41.2 17.9 54 164-220 114-169 (395)
100 PRK08850 2-octaprenyl-6-methox 94.5 3 6.6E-05 41.4 17.6 60 164-226 113-175 (405)
101 PRK07608 ubiquinone biosynthes 94.5 3.1 6.6E-05 41.0 17.5 59 163-225 112-173 (388)
102 PRK06134 putative FAD-binding 94.4 0.14 3.1E-06 53.4 8.2 57 162-220 217-278 (581)
103 COG4716 Myosin-crossreactive a 94.2 0.2 4.3E-06 47.8 7.8 99 91-195 159-260 (587)
104 PRK12835 3-ketosteroid-delta-1 94.2 0.14 3.1E-06 53.5 7.5 58 162-220 213-275 (584)
105 TIGR01320 mal_quin_oxido malat 94.1 0.2 4.3E-06 51.0 8.4 57 162-220 178-240 (483)
106 PRK07364 2-octaprenyl-6-methox 94.1 4.3 9.2E-05 40.4 17.9 55 163-220 122-181 (415)
107 TIGR01816 sdhA_forward succina 94.0 0.24 5.2E-06 51.6 8.9 58 161-220 118-181 (565)
108 PRK05329 anaerobic glycerol-3- 94.0 0.21 4.5E-06 49.8 7.9 55 163-219 260-317 (422)
109 PF05834 Lycopene_cycl: Lycope 93.9 7 0.00015 38.4 22.6 55 163-221 88-143 (374)
110 PRK12844 3-ketosteroid-delta-1 93.8 0.2 4.3E-06 52.1 7.9 57 162-220 208-269 (557)
111 PRK12845 3-ketosteroid-delta-1 93.8 0.19 4.2E-06 52.2 7.6 57 162-220 217-278 (564)
112 PRK06481 fumarate reductase fl 93.7 0.2 4.3E-06 51.4 7.6 54 163-218 191-249 (506)
113 PRK07121 hypothetical protein; 93.7 0.23 4.9E-06 50.9 8.0 59 161-220 176-239 (492)
114 PRK04176 ribulose-1,5-biphosph 93.6 0.24 5.3E-06 45.9 7.3 57 163-220 105-173 (257)
115 PRK05257 malate:quinone oxidor 93.6 0.26 5.6E-06 50.4 8.1 58 163-221 184-247 (494)
116 COG1252 Ndh NADH dehydrogenase 93.6 0.17 3.7E-06 49.7 6.4 56 159-220 206-262 (405)
117 PRK08013 oxidoreductase; Provi 93.5 6.9 0.00015 38.8 18.1 59 164-225 113-174 (400)
118 TIGR01813 flavo_cyto_c flavocy 93.4 0.22 4.7E-06 50.2 7.1 57 163-220 131-192 (439)
119 PRK12843 putative FAD-binding 93.3 0.25 5.3E-06 51.7 7.5 57 162-220 221-282 (578)
120 PRK09078 sdhA succinate dehydr 93.2 0.38 8.1E-06 50.5 8.7 59 161-220 148-212 (598)
121 PRK06996 hypothetical protein; 93.0 9.7 0.00021 37.7 18.2 61 163-226 116-182 (398)
122 PRK07843 3-ketosteroid-delta-1 93.0 0.33 7.2E-06 50.5 8.0 57 161-219 207-268 (557)
123 PRK08243 4-hydroxybenzoate 3-m 93.0 10 0.00022 37.5 19.9 61 164-226 105-170 (392)
124 PRK05675 sdhA succinate dehydr 93.0 0.44 9.4E-06 49.7 8.8 59 161-220 125-189 (570)
125 PLN02927 antheraxanthin epoxid 93.0 9.3 0.0002 40.5 18.3 45 178-225 208-254 (668)
126 PRK08401 L-aspartate oxidase; 92.9 0.36 7.7E-06 49.1 7.8 56 162-220 120-175 (466)
127 PRK06175 L-aspartate oxidase; 92.8 0.4 8.6E-06 48.2 7.9 55 162-218 128-187 (433)
128 PRK08958 sdhA succinate dehydr 92.7 0.51 1.1E-05 49.4 8.8 59 161-220 142-206 (588)
129 PRK06116 glutathione reductase 92.7 0.39 8.5E-06 48.5 7.8 56 162-219 208-264 (450)
130 PRK06126 hypothetical protein; 92.6 15 0.00031 38.2 22.4 60 164-225 128-194 (545)
131 PF13454 NAD_binding_9: FAD-NA 92.5 0.42 9.2E-06 40.5 6.7 42 175-218 113-155 (156)
132 TIGR01812 sdhA_frdA_Gneg succi 92.5 0.53 1.2E-05 49.1 8.6 57 162-220 129-191 (566)
133 PRK13339 malate:quinone oxidor 92.4 0.47 1E-05 48.3 7.8 57 163-221 185-248 (497)
134 PRK07573 sdhA succinate dehydr 92.4 0.44 9.6E-06 50.3 8.0 53 166-220 174-232 (640)
135 PRK12839 hypothetical protein; 92.4 0.45 9.7E-06 49.6 7.8 58 162-220 214-276 (572)
136 TIGR00292 thiazole biosynthesi 92.1 0.64 1.4E-05 43.0 7.8 57 163-219 101-169 (254)
137 PRK05945 sdhA succinate dehydr 92.0 0.66 1.4E-05 48.5 8.7 57 162-220 135-197 (575)
138 PF06039 Mqo: Malate:quinone o 92.0 0.65 1.4E-05 46.0 7.8 58 163-222 182-246 (488)
139 TIGR01811 sdhA_Bsu succinate d 92.0 0.67 1.4E-05 48.7 8.6 57 162-219 129-195 (603)
140 PRK12842 putative succinate de 91.9 0.49 1.1E-05 49.4 7.6 57 162-220 214-275 (574)
141 PRK12834 putative FAD-binding 91.8 0.53 1.2E-05 48.9 7.7 55 163-219 149-226 (549)
142 PRK09564 coenzyme A disulfide 91.8 0.59 1.3E-05 47.1 7.9 62 162-226 191-252 (444)
143 PF01134 GIDA: Glucose inhibit 91.7 0.71 1.5E-05 45.2 7.8 52 164-218 97-150 (392)
144 KOG2844 Dimethylglycine dehydr 91.6 0.32 6.9E-06 49.9 5.4 97 121-220 145-243 (856)
145 PRK06452 sdhA succinate dehydr 91.5 0.57 1.2E-05 48.8 7.4 57 162-220 136-198 (566)
146 PRK04965 NADH:flavorubredoxin 91.3 0.76 1.6E-05 45.2 7.9 55 163-220 184-239 (377)
147 TIGR00551 nadB L-aspartate oxi 91.3 0.52 1.1E-05 48.2 6.9 57 162-220 128-189 (488)
148 TIGR02023 BchP-ChlP geranylger 91.3 16 0.00035 36.0 23.8 38 365-402 264-303 (388)
149 PRK07251 pyridine nucleotide-d 91.3 0.72 1.6E-05 46.4 7.8 54 163-219 199-252 (438)
150 TIGR03364 HpnW_proposed FAD de 91.2 0.51 1.1E-05 46.1 6.6 52 163-221 146-198 (365)
151 PTZ00139 Succinate dehydrogena 91.2 0.73 1.6E-05 48.5 8.0 57 162-219 166-228 (617)
152 PRK08275 putative oxidoreducta 91.1 0.81 1.8E-05 47.6 8.2 58 162-220 137-200 (554)
153 PRK08010 pyridine nucleotide-d 91.1 0.68 1.5E-05 46.6 7.5 55 162-219 199-253 (441)
154 PRK07057 sdhA succinate dehydr 91.1 1.1 2.3E-05 47.1 9.1 59 161-220 147-211 (591)
155 PRK08132 FAD-dependent oxidore 91.1 21 0.00046 37.0 21.1 61 164-226 127-192 (547)
156 PRK06416 dihydrolipoamide dehy 91.0 0.8 1.7E-05 46.4 7.9 54 163-219 214-271 (462)
157 PRK07512 L-aspartate oxidase; 91.0 0.51 1.1E-05 48.5 6.5 57 161-219 135-196 (513)
158 PRK06263 sdhA succinate dehydr 90.8 0.72 1.6E-05 47.8 7.5 58 162-220 134-197 (543)
159 PRK14694 putative mercuric red 90.8 0.79 1.7E-05 46.6 7.6 56 162-220 218-273 (468)
160 PRK05249 soluble pyridine nucl 90.6 0.81 1.7E-05 46.4 7.5 56 162-220 216-272 (461)
161 PLN02507 glutathione reductase 90.6 0.96 2.1E-05 46.4 8.1 56 161-219 243-299 (499)
162 PRK14727 putative mercuric red 90.6 0.85 1.8E-05 46.5 7.6 55 163-220 229-283 (479)
163 TIGR01350 lipoamide_DH dihydro 90.5 1 2.2E-05 45.7 8.1 55 162-219 211-268 (461)
164 PLN00128 Succinate dehydrogena 90.3 1.1 2.4E-05 47.3 8.4 58 162-220 187-250 (635)
165 PF00732 GMC_oxred_N: GMC oxid 90.3 0.93 2E-05 42.8 7.2 64 166-229 197-267 (296)
166 PRK06753 hypothetical protein; 90.2 19 0.00041 35.1 16.8 58 164-226 100-159 (373)
167 PRK07845 flavoprotein disulfid 90.0 1 2.2E-05 45.8 7.6 54 163-219 219-273 (466)
168 TIGR01424 gluta_reduc_2 glutat 90.0 1.1 2.5E-05 45.1 7.9 55 162-219 207-262 (446)
169 PRK08205 sdhA succinate dehydr 89.9 1.1 2.3E-05 47.0 7.9 59 162-220 140-206 (583)
170 PF00070 Pyr_redox: Pyridine n 89.9 0.96 2.1E-05 33.3 5.5 41 160-203 38-78 (80)
171 TIGR01423 trypano_reduc trypan 89.9 1.2 2.6E-05 45.5 8.0 56 162-219 231-287 (486)
172 PRK07804 L-aspartate oxidase; 89.9 0.92 2E-05 47.0 7.3 58 162-220 144-210 (541)
173 PRK09754 phenylpropionate diox 89.8 1.3 2.7E-05 44.0 7.9 58 164-225 188-246 (396)
174 PRK08626 fumarate reductase fl 89.7 1.2 2.6E-05 47.2 8.1 57 162-220 158-220 (657)
175 TIGR01421 gluta_reduc_1 glutat 89.7 1.4 3E-05 44.6 8.3 56 162-219 207-264 (450)
176 PRK12837 3-ketosteroid-delta-1 89.7 1 2.2E-05 46.3 7.4 55 163-219 174-234 (513)
177 PRK07395 L-aspartate oxidase; 89.6 0.75 1.6E-05 47.8 6.4 58 162-219 134-196 (553)
178 PRK13748 putative mercuric red 89.2 1.2 2.6E-05 46.4 7.6 54 163-219 311-364 (561)
179 PRK11445 putative oxidoreducta 89.2 23 0.00049 34.4 23.6 49 174-225 110-163 (351)
180 PRK14989 nitrite reductase sub 89.1 1.3 2.9E-05 48.3 8.0 61 164-225 189-250 (847)
181 PLN02985 squalene monooxygenas 89.0 30 0.00065 35.6 19.9 61 163-226 148-215 (514)
182 PRK09897 hypothetical protein; 89.0 1.4 3E-05 45.4 7.6 52 164-218 109-164 (534)
183 TIGR01292 TRX_reduct thioredox 88.9 1.4 3E-05 41.5 7.2 53 163-219 58-111 (300)
184 PRK08071 L-aspartate oxidase; 88.7 0.89 1.9E-05 46.8 6.1 56 162-220 130-190 (510)
185 PRK07818 dihydrolipoamide dehy 88.6 1.8 3.8E-05 44.0 8.1 55 163-219 214-272 (466)
186 KOG1336 Monodehydroascorbate/f 88.4 1.1 2.4E-05 44.3 6.1 64 162-226 255-319 (478)
187 PRK06854 adenylylsulfate reduc 88.4 1.7 3.7E-05 45.7 8.1 56 163-220 133-195 (608)
188 PRK06912 acoL dihydrolipoamide 88.2 1.8 3.9E-05 43.8 7.9 54 163-219 212-267 (458)
189 PRK06327 dihydrolipoamide dehy 88.1 1.8 3.9E-05 44.0 7.9 54 163-219 225-283 (475)
190 TIGR03385 CoA_CoA_reduc CoA-di 87.9 1.7 3.6E-05 43.6 7.4 59 163-225 180-238 (427)
191 TIGR01989 COQ6 Ubiquinone bios 87.9 32 0.00069 34.6 17.9 61 164-225 119-189 (437)
192 PRK08163 salicylate hydroxylas 87.9 1.8 3.9E-05 42.7 7.6 55 164-221 111-167 (396)
193 PLN02172 flavin-containing mon 87.7 1.7 3.7E-05 44.0 7.3 53 164-219 113-172 (461)
194 PRK07803 sdhA succinate dehydr 87.6 1.9 4.1E-05 45.5 7.9 55 162-218 138-211 (626)
195 TIGR03140 AhpF alkyl hydropero 87.5 1.8 4E-05 44.5 7.6 54 163-219 268-322 (515)
196 PTZ00058 glutathione reductase 87.3 2.2 4.7E-05 44.4 7.9 57 162-219 278-335 (561)
197 PRK06069 sdhA succinate dehydr 87.2 2.1 4.5E-05 44.8 7.9 57 162-220 137-200 (577)
198 PTZ00052 thioredoxin reductase 87.2 2 4.3E-05 44.1 7.6 56 162-220 222-278 (499)
199 PLN00093 geranylgeranyl diphos 87.0 37 0.0008 34.3 23.7 39 364-402 308-348 (450)
200 PRK15317 alkyl hydroperoxide r 86.9 2.2 4.7E-05 44.0 7.7 54 163-219 267-321 (517)
201 PTZ00318 NADH dehydrogenase-li 86.3 1.9 4.1E-05 43.2 6.8 52 161-218 227-278 (424)
202 PTZ00306 NADH-dependent fumara 85.8 2.1 4.5E-05 48.7 7.4 57 163-219 545-619 (1167)
203 PRK06370 mercuric reductase; V 85.6 3 6.5E-05 42.3 7.9 55 163-219 213-270 (463)
204 TIGR01438 TGR thioredoxin and 85.6 2.8 6.1E-05 42.8 7.6 55 162-219 220-278 (484)
205 TIGR02028 ChlP geranylgeranyl 84.9 43 0.00093 33.2 23.6 39 364-402 269-309 (398)
206 TIGR02053 MerA mercuric reduct 84.9 3.4 7.3E-05 41.9 7.9 54 163-219 208-265 (463)
207 TIGR02374 nitri_red_nirB nitri 84.9 2.7 5.9E-05 45.7 7.5 53 164-219 184-237 (785)
208 COG1249 Lpd Pyruvate/2-oxoglut 84.6 3.3 7.1E-05 41.7 7.4 55 161-218 213-270 (454)
209 PRK05976 dihydrolipoamide dehy 84.5 3.8 8.2E-05 41.7 8.0 57 163-220 222-281 (472)
210 PRK09231 fumarate reductase fl 84.4 3.5 7.5E-05 43.2 7.8 57 162-220 133-196 (582)
211 PRK06115 dihydrolipoamide dehy 84.2 3.8 8.3E-05 41.6 7.9 55 163-219 216-275 (466)
212 PLN02815 L-aspartate oxidase 84.1 3.1 6.7E-05 43.6 7.2 58 162-219 155-221 (594)
213 TIGR01176 fum_red_Fp fumarate 84.0 5.3 0.00011 41.8 8.9 57 162-220 132-195 (580)
214 TIGR01810 betA choline dehydro 83.9 2.2 4.8E-05 44.1 6.1 51 174-226 206-261 (532)
215 PF04820 Trp_halogenase: Trypt 83.4 4.8 0.0001 40.7 8.1 55 164-220 156-211 (454)
216 PRK07538 hypothetical protein; 83.4 50 0.0011 32.8 18.2 61 164-226 104-172 (413)
217 PRK05192 tRNA uridine 5-carbox 83.3 3.6 7.7E-05 42.9 7.2 54 164-220 102-157 (618)
218 PLN02546 glutathione reductase 83.2 4.8 0.0001 41.9 8.2 58 161-220 292-350 (558)
219 KOG0404 Thioredoxin reductase 83.2 2.3 5E-05 37.9 4.9 64 154-221 62-125 (322)
220 PRK04965 NADH:flavorubredoxin 82.8 3.5 7.6E-05 40.5 6.8 45 170-219 66-110 (377)
221 PRK08641 sdhA succinate dehydr 82.7 4.4 9.6E-05 42.5 7.8 58 162-220 133-200 (589)
222 TIGR00136 gidA glucose-inhibit 82.6 3.9 8.3E-05 42.6 7.1 55 164-220 98-154 (617)
223 PRK10262 thioredoxin reductase 82.3 2.8 6E-05 40.2 5.8 54 164-219 187-247 (321)
224 PF13434 K_oxygenase: L-lysine 82.1 2.5 5.5E-05 40.9 5.3 59 158-218 269-339 (341)
225 KOG1335 Dihydrolipoamide dehyd 81.5 5.9 0.00013 38.4 7.3 58 159-218 249-312 (506)
226 COG2509 Uncharacterized FAD-de 80.8 4.1 8.9E-05 40.3 6.1 40 360-402 445-484 (486)
227 PRK07846 mycothione reductase; 80.8 5.3 0.00011 40.4 7.4 53 164-220 209-262 (451)
228 TIGR03219 salicylate_mono sali 80.8 4.4 9.6E-05 40.3 6.8 57 164-225 107-165 (414)
229 PRK06617 2-octaprenyl-6-methox 80.7 5.2 0.00011 39.2 7.1 61 163-226 105-167 (374)
230 TIGR01316 gltA glutamate synth 80.4 5.3 0.00011 40.4 7.2 33 169-202 316-348 (449)
231 TIGR00136 gidA glucose-inhibit 80.2 7.2 0.00016 40.7 8.0 53 363-422 356-408 (617)
232 PLN02661 Putative thiazole syn 79.7 7.6 0.00017 37.6 7.5 52 164-217 174-241 (357)
233 TIGR03169 Nterm_to_SelD pyridi 79.5 4.6 9.9E-05 39.4 6.3 51 163-220 192-243 (364)
234 PRK09077 L-aspartate oxidase; 79.2 8.3 0.00018 39.9 8.3 59 162-220 138-207 (536)
235 PRK05335 tRNA (uracil-5-)-meth 79.2 11 0.00024 37.6 8.6 83 321-412 290-373 (436)
236 TIGR02462 pyranose_ox pyranose 78.5 6.2 0.00013 40.7 7.0 50 176-225 228-284 (544)
237 PRK08849 2-octaprenyl-3-methyl 78.3 7 0.00015 38.5 7.2 59 164-225 112-173 (384)
238 PRK08294 phenol 2-monooxygenas 77.5 1E+02 0.0022 32.7 22.8 62 164-226 143-217 (634)
239 PRK11749 dihydropyrimidine deh 77.2 7.4 0.00016 39.4 7.2 39 362-403 415-453 (457)
240 TIGR03452 mycothione_red mycot 77.2 8.6 0.00019 38.9 7.6 52 164-219 212-264 (452)
241 PRK09564 coenzyme A disulfide 76.9 4.9 0.00011 40.4 5.8 48 169-219 63-114 (444)
242 COG3075 GlpB Anaerobic glycero 76.5 4.7 0.0001 38.2 4.9 63 163-227 259-324 (421)
243 PRK12810 gltD glutamate syntha 76.4 6 0.00013 40.3 6.2 38 362-402 428-465 (471)
244 PRK09754 phenylpropionate diox 76.2 6.4 0.00014 39.0 6.3 46 171-220 67-112 (396)
245 PF12831 FAD_oxidored: FAD dep 76.0 0.86 1.9E-05 45.7 0.0 54 172-227 100-157 (428)
246 PRK07236 hypothetical protein; 76.0 6.8 0.00015 38.6 6.4 52 164-220 102-154 (386)
247 KOG0405 Pyridine nucleotide-di 75.7 7.3 0.00016 37.3 5.9 60 159-219 227-286 (478)
248 TIGR01318 gltD_gamma_fam gluta 75.6 10 0.00022 38.6 7.6 38 362-402 429-466 (467)
249 TIGR02374 nitri_red_nirB nitri 75.5 6 0.00013 43.1 6.3 47 169-219 61-107 (785)
250 PRK13512 coenzyme A disulfide 75.5 6.9 0.00015 39.4 6.4 53 162-220 189-241 (438)
251 TIGR02061 aprA adenosine phosp 75.5 12 0.00026 39.5 8.2 57 164-220 128-191 (614)
252 PF00743 FMO-like: Flavin-bind 74.8 10 0.00022 39.3 7.4 56 164-220 86-150 (531)
253 COG0446 HcaD Uncharacterized N 74.1 8.7 0.00019 37.8 6.7 56 163-220 179-237 (415)
254 COG0492 TrxB Thioredoxin reduc 73.9 11 0.00024 35.9 6.9 56 161-220 60-115 (305)
255 PRK12831 putative oxidoreducta 73.6 10 0.00022 38.5 7.0 38 362-402 424-461 (464)
256 PRK02106 choline dehydrogenase 73.4 5.5 0.00012 41.5 5.2 52 174-227 213-269 (560)
257 KOG1346 Programmed cell death 72.9 4.3 9.4E-05 39.6 3.8 67 157-226 384-455 (659)
258 PF13434 K_oxygenase: L-lysine 72.8 6.4 0.00014 38.1 5.1 41 178-218 111-157 (341)
259 PRK05868 hypothetical protein; 72.8 9.8 0.00021 37.3 6.6 51 174-227 116-168 (372)
260 TIGR03385 CoA_CoA_reduc CoA-di 72.3 9.3 0.0002 38.2 6.4 45 172-219 54-102 (427)
261 COG2072 TrkA Predicted flavopr 71.9 13 0.00028 37.5 7.2 54 164-218 84-142 (443)
262 PRK12769 putative oxidoreducta 71.6 12 0.00027 39.7 7.5 38 362-402 615-652 (654)
263 PF07992 Pyr_redox_2: Pyridine 70.8 7 0.00015 34.1 4.6 50 167-218 63-120 (201)
264 TIGR03140 AhpF alkyl hydropero 70.7 11 0.00025 38.7 6.7 51 168-220 393-450 (515)
265 TIGR00137 gid_trmFO tRNA:m(5)U 70.6 13 0.00028 37.1 6.8 90 321-422 289-379 (433)
266 KOG2404 Fumarate reductase, fl 70.6 7.6 0.00016 36.7 4.7 56 164-221 141-207 (477)
267 TIGR01292 TRX_reduct thioredox 70.3 14 0.00031 34.4 7.0 52 165-219 179-237 (300)
268 PRK12831 putative oxidoreducta 69.6 7.1 0.00015 39.6 4.9 45 164-219 193-239 (464)
269 PRK12769 putative oxidoreducta 69.4 6.9 0.00015 41.7 4.9 45 166-221 381-425 (654)
270 TIGR03169 Nterm_to_SelD pyridi 68.4 7.7 0.00017 37.8 4.7 51 164-220 56-107 (364)
271 PRK06467 dihydrolipoamide dehy 68.2 17 0.00038 36.9 7.4 54 162-219 215-273 (471)
272 PRK06292 dihydrolipoamide dehy 66.9 20 0.00044 36.2 7.6 54 163-219 211-267 (460)
273 PRK05192 tRNA uridine 5-carbox 66.8 25 0.00054 36.9 8.1 89 319-422 318-409 (618)
274 PF01134 GIDA: Glucose inhibit 66.7 17 0.00037 35.7 6.6 73 319-401 314-388 (392)
275 PRK04176 ribulose-1,5-biphosph 66.6 7.3 0.00016 36.0 3.9 39 364-402 213-255 (257)
276 PRK06475 salicylate hydroxylas 66.6 22 0.00047 35.2 7.6 61 163-225 108-173 (400)
277 COG1251 NirB NAD(P)H-nitrite r 66.0 6.5 0.00014 41.3 3.7 50 167-219 192-242 (793)
278 TIGR01318 gltD_gamma_fam gluta 65.5 11 0.00024 38.3 5.3 47 164-221 193-239 (467)
279 TIGR01316 gltA glutamate synth 65.4 9.5 0.00021 38.5 4.8 39 360-401 411-449 (449)
280 TIGR03143 AhpF_homolog putativ 65.2 19 0.00042 37.4 7.2 53 163-219 61-113 (555)
281 TIGR00292 thiazole biosynthesi 65.2 8.5 0.00018 35.6 4.0 40 363-402 211-254 (254)
282 PRK13512 coenzyme A disulfide 65.1 17 0.00036 36.6 6.5 45 173-220 69-117 (438)
283 COG3486 IucD Lysine/ornithine 64.2 20 0.00043 35.2 6.3 59 159-219 268-339 (436)
284 PRK10262 thioredoxin reductase 64.2 25 0.00055 33.5 7.3 53 164-220 65-117 (321)
285 PRK12810 gltD glutamate syntha 63.6 11 0.00024 38.4 4.9 46 164-220 195-240 (471)
286 PRK14989 nitrite reductase sub 63.3 16 0.00034 40.2 6.3 46 169-219 66-112 (847)
287 PRK12809 putative oxidoreducta 62.7 21 0.00045 37.9 6.9 38 362-402 598-635 (639)
288 COG0445 GidA Flavin-dependent 61.7 9.1 0.0002 39.0 3.7 40 182-222 120-160 (621)
289 PRK12778 putative bifunctional 61.1 22 0.00047 38.6 6.9 38 362-402 713-750 (752)
290 PRK13800 putative oxidoreducta 60.8 28 0.00061 38.6 7.7 55 163-219 140-204 (897)
291 COG0445 GidA Flavin-dependent 60.8 14 0.0003 37.7 4.8 66 318-393 317-384 (621)
292 TIGR03315 Se_ygfK putative sel 60.6 14 0.00029 41.2 5.2 40 361-403 802-841 (1012)
293 PRK12770 putative glutamate sy 60.3 27 0.00058 33.9 6.8 36 363-401 314-349 (352)
294 COG1635 THI4 Ribulose 1,5-bisp 59.8 9 0.0002 34.3 2.9 41 362-402 216-260 (262)
295 PRK12770 putative glutamate sy 59.7 16 0.00034 35.5 5.1 52 168-219 74-129 (352)
296 COG1635 THI4 Ribulose 1,5-bisp 59.6 37 0.00079 30.6 6.6 56 164-220 111-178 (262)
297 TIGR01317 GOGAT_sm_gam glutama 59.5 15 0.00033 37.4 5.1 40 361-403 441-480 (485)
298 COG1251 NirB NAD(P)H-nitrite r 59.3 15 0.00033 38.7 4.9 52 164-220 61-113 (793)
299 PTZ00153 lipoamide dehydrogena 59.3 37 0.00081 36.1 8.0 54 164-219 355-426 (659)
300 PF01946 Thi4: Thi4 family; PD 58.8 37 0.0008 30.5 6.6 56 164-220 98-165 (230)
301 PRK13984 putative oxidoreducta 57.9 26 0.00057 36.9 6.7 37 362-402 566-602 (604)
302 PRK15317 alkyl hydroperoxide r 57.8 26 0.00057 36.1 6.5 51 167-219 391-448 (517)
303 TIGR01424 gluta_reduc_2 glutat 57.6 25 0.00054 35.4 6.2 37 360-399 289-325 (446)
304 PRK12775 putative trifunctiona 57.4 17 0.00037 40.8 5.3 41 360-403 716-756 (1006)
305 PRK12771 putative glutamate sy 57.3 16 0.00035 38.1 4.9 40 361-403 406-445 (564)
306 PRK12779 putative bifunctional 56.8 14 0.00031 41.0 4.6 40 361-403 589-628 (944)
307 COG2081 Predicted flavoprotein 56.5 15 0.00032 35.9 4.1 40 362-401 366-407 (408)
308 PRK13984 putative oxidoreducta 56.2 17 0.00037 38.2 5.0 46 164-220 335-380 (604)
309 PRK11749 dihydropyrimidine deh 56.0 16 0.00034 37.0 4.5 46 163-219 191-236 (457)
310 PLN02661 Putative thiazole syn 56.0 14 0.00031 35.8 3.9 41 363-403 285-329 (357)
311 PRK12809 putative oxidoreducta 55.9 15 0.00033 38.9 4.5 47 164-221 362-408 (639)
312 TIGR01372 soxA sarcosine oxida 55.9 38 0.00083 38.0 7.8 54 164-220 353-411 (985)
313 KOG1336 Monodehydroascorbate/f 54.8 23 0.0005 35.4 5.1 49 166-218 131-179 (478)
314 TIGR03862 flavo_PP4765 unchara 54.6 18 0.00039 35.5 4.4 40 362-401 334-375 (376)
315 PRK12775 putative trifunctiona 53.3 36 0.00079 38.2 7.0 49 170-219 617-685 (1006)
316 PRK09853 putative selenate red 52.6 24 0.00053 39.2 5.4 40 361-403 804-843 (1019)
317 PRK12814 putative NADPH-depend 51.8 24 0.00053 37.5 5.3 41 360-403 462-502 (652)
318 COG0562 Glf UDP-galactopyranos 51.5 14 0.0003 35.0 2.9 116 95-227 131-248 (374)
319 COG1206 Gid NAD(FAD)-utilizing 51.4 12 0.00025 35.7 2.4 67 321-394 294-360 (439)
320 TIGR03143 AhpF_homolog putativ 50.7 17 0.00037 37.9 3.8 41 361-403 270-310 (555)
321 PRK12778 putative bifunctional 50.0 24 0.00052 38.3 5.0 45 164-219 483-528 (752)
322 TIGR02360 pbenz_hydroxyl 4-hyd 47.5 65 0.0014 31.7 7.3 62 163-226 104-170 (390)
323 TIGR01372 soxA sarcosine oxida 47.1 25 0.00055 39.4 4.7 38 362-403 436-473 (985)
324 PRK12842 putative succinate de 47.0 25 0.00054 36.8 4.4 42 362-403 522-569 (574)
325 TIGR01789 lycopene_cycl lycope 45.9 3E+02 0.0064 26.9 20.5 47 164-219 91-137 (370)
326 COG0029 NadB Aspartate oxidase 45.8 56 0.0012 33.1 6.2 61 157-218 128-194 (518)
327 PRK12844 3-ketosteroid-delta-1 45.5 29 0.00063 36.2 4.5 41 362-402 505-551 (557)
328 PRK06116 glutathione reductase 45.0 32 0.0007 34.6 4.7 37 360-399 291-327 (450)
329 TIGR01421 gluta_reduc_1 glutat 44.7 34 0.00073 34.5 4.8 37 360-399 291-327 (450)
330 TIGR01811 sdhA_Bsu succinate d 44.4 66 0.0014 33.9 7.0 43 359-401 378-425 (603)
331 KOG2852 Possible oxidoreductas 44.4 2.8E+02 0.0062 26.2 12.7 57 163-222 148-210 (380)
332 TIGR01816 sdhA_forward succina 44.3 30 0.00064 36.2 4.4 41 362-402 351-397 (565)
333 PRK06263 sdhA succinate dehydr 44.3 29 0.00063 36.0 4.4 42 360-401 357-403 (543)
334 PTZ00367 squalene epoxidase; P 43.7 4.1E+02 0.0088 27.8 17.3 36 364-399 336-373 (567)
335 KOG2415 Electron transfer flav 41.9 50 0.0011 32.7 5.1 64 164-228 185-266 (621)
336 PRK12839 hypothetical protein; 41.8 31 0.00068 36.1 4.1 41 362-402 523-569 (572)
337 PRK09231 fumarate reductase fl 41.7 35 0.00076 35.8 4.5 44 359-402 366-415 (582)
338 PRK09078 sdhA succinate dehydr 41.1 35 0.00076 35.9 4.4 41 362-402 383-429 (598)
339 PRK06175 L-aspartate oxidase; 40.7 87 0.0019 31.4 7.0 43 359-401 339-387 (433)
340 COG2303 BetA Choline dehydroge 40.5 46 0.00099 34.6 5.1 53 172-226 213-272 (542)
341 TIGR00551 nadB L-aspartate oxi 40.3 39 0.00086 34.5 4.6 43 359-401 341-389 (488)
342 PRK06452 sdhA succinate dehydr 40.0 45 0.00097 34.9 5.0 42 361-402 356-404 (566)
343 PRK07845 flavoprotein disulfid 39.5 77 0.0017 32.1 6.5 37 360-399 300-336 (466)
344 PRK05249 soluble pyridine nucl 39.4 38 0.00083 34.2 4.3 37 360-399 298-334 (461)
345 PRK07121 hypothetical protein; 39.2 35 0.00077 34.8 4.0 40 362-401 447-491 (492)
346 PRK12771 putative glutamate sy 39.1 97 0.0021 32.3 7.3 47 172-220 315-380 (564)
347 PLN00128 Succinate dehydrogena 38.2 47 0.001 35.3 4.8 41 362-402 421-467 (635)
348 PRK12845 3-ketosteroid-delta-1 38.2 35 0.00075 35.7 3.8 38 362-399 520-563 (564)
349 PRK12779 putative bifunctional 38.1 96 0.0021 34.7 7.3 47 173-219 495-561 (944)
350 PRK08641 sdhA succinate dehydr 37.8 47 0.001 34.9 4.7 42 360-401 364-410 (589)
351 PRK14727 putative mercuric red 37.8 40 0.00087 34.3 4.1 37 360-399 309-345 (479)
352 TIGR01812 sdhA_frdA_Gneg succi 37.7 50 0.0011 34.5 4.9 40 362-401 357-402 (566)
353 TIGR01176 fum_red_Fp fumarate 37.7 53 0.0012 34.4 5.1 44 359-402 365-414 (580)
354 PRK08205 sdhA succinate dehydr 37.6 44 0.00095 35.1 4.5 40 362-401 373-418 (583)
355 PRK12835 3-ketosteroid-delta-1 37.5 43 0.00092 35.2 4.3 41 362-402 525-571 (584)
356 PLN02785 Protein HOTHEAD 37.3 1.2E+02 0.0026 31.9 7.6 54 172-225 230-295 (587)
357 COG3573 Predicted oxidoreducta 37.1 86 0.0019 30.1 5.7 53 163-217 150-225 (552)
358 KOG0042 Glycerol-3-phosphate d 36.7 3E+02 0.0065 28.5 9.6 152 153-326 214-376 (680)
359 TIGR02485 CobZ_N-term precorri 35.9 45 0.00097 33.4 4.1 39 362-400 385-429 (432)
360 PRK06134 putative FAD-binding 35.9 43 0.00094 35.1 4.1 41 362-402 526-572 (581)
361 PRK12834 putative FAD-binding 35.5 39 0.00085 35.1 3.7 38 362-399 502-548 (549)
362 PTZ00139 Succinate dehydrogena 35.1 45 0.00097 35.3 4.1 40 362-401 400-445 (617)
363 PRK08275 putative oxidoreducta 34.8 43 0.00094 34.8 3.9 41 359-401 364-404 (554)
364 TIGR01423 trypano_reduc trypan 34.5 59 0.0013 33.3 4.7 37 360-399 314-350 (486)
365 PRK13748 putative mercuric red 33.6 51 0.0011 34.3 4.2 37 360-399 391-427 (561)
366 PRK05329 anaerobic glycerol-3- 33.5 49 0.0011 33.1 3.8 38 362-401 378-420 (422)
367 PRK06292 dihydrolipoamide dehy 33.4 54 0.0012 33.1 4.3 37 360-399 294-330 (460)
368 PLN02852 ferredoxin-NADP+ redu 33.3 45 0.00098 34.1 3.6 41 361-403 383-423 (491)
369 PRK07843 3-ketosteroid-delta-1 33.1 44 0.00095 34.9 3.6 38 362-399 512-555 (557)
370 KOG1399 Flavin-containing mono 33.1 1.3E+02 0.0027 30.5 6.6 55 164-220 92-153 (448)
371 TIGR01438 TGR thioredoxin and 33.1 65 0.0014 32.9 4.7 38 360-399 306-343 (484)
372 PTZ00318 NADH dehydrogenase-li 32.6 77 0.0017 31.6 5.2 40 362-402 306-348 (424)
373 PRK06467 dihydrolipoamide dehy 32.5 54 0.0012 33.3 4.1 37 360-399 300-336 (471)
374 TIGR03378 glycerol3P_GlpB glyc 32.4 45 0.00097 33.3 3.3 40 356-398 373-419 (419)
375 PRK12837 3-ketosteroid-delta-1 32.1 39 0.00084 34.8 3.0 38 362-399 467-510 (513)
376 PRK14694 putative mercuric red 32.0 59 0.0013 33.0 4.3 37 360-399 298-334 (468)
377 PLN02507 glutathione reductase 31.8 66 0.0014 33.0 4.6 38 359-399 325-362 (499)
378 TIGR01317 GOGAT_sm_gam glutama 31.7 1.1E+02 0.0025 31.1 6.3 43 175-218 349-412 (485)
379 PRK08958 sdhA succinate dehydr 31.7 63 0.0014 34.0 4.5 40 362-401 378-423 (588)
380 PRK06069 sdhA succinate dehydr 31.3 56 0.0012 34.2 4.1 40 362-401 369-414 (577)
381 PRK07803 sdhA succinate dehydr 31.3 56 0.0012 34.6 4.1 41 361-401 402-447 (626)
382 PRK09077 L-aspartate oxidase; 31.1 71 0.0015 33.1 4.7 42 360-401 362-409 (536)
383 PRK07818 dihydrolipoamide dehy 31.0 66 0.0014 32.6 4.4 37 360-399 299-335 (466)
384 PRK08071 L-aspartate oxidase; 31.0 64 0.0014 33.2 4.3 42 360-401 341-388 (510)
385 PRK08274 tricarballylate dehyd 30.9 57 0.0012 33.0 4.0 40 362-401 416-461 (466)
386 PRK05976 dihydrolipoamide dehy 30.8 1.4E+02 0.0029 30.4 6.7 37 360-399 306-342 (472)
387 PRK06481 fumarate reductase fl 30.5 57 0.0012 33.5 3.9 40 362-401 459-503 (506)
388 PRK12843 putative FAD-binding 29.9 60 0.0013 34.0 4.0 41 362-402 527-573 (578)
389 PRK06416 dihydrolipoamide dehy 29.6 71 0.0015 32.3 4.4 37 360-399 297-333 (462)
390 PRK05945 sdhA succinate dehydr 29.3 75 0.0016 33.2 4.6 40 362-401 368-413 (575)
391 PRK05675 sdhA succinate dehydr 28.9 73 0.0016 33.3 4.4 41 362-402 360-406 (570)
392 COG1249 Lpd Pyruvate/2-oxoglut 28.9 76 0.0016 32.1 4.3 36 361-399 299-334 (454)
393 PRK06370 mercuric reductase; V 28.9 81 0.0017 31.9 4.6 37 360-399 297-333 (463)
394 PRK07573 sdhA succinate dehydr 28.8 1.4E+02 0.0031 31.7 6.6 37 360-396 415-456 (640)
395 KOG2311 NAD/FAD-utilizing prot 28.8 73 0.0016 32.2 4.0 42 178-220 141-186 (679)
396 PTZ00052 thioredoxin reductase 28.8 76 0.0016 32.6 4.4 37 361-399 304-340 (499)
397 COG3486 IucD Lysine/ornithine 28.3 1.2E+02 0.0025 30.1 5.2 41 178-218 113-155 (436)
398 PTZ00306 NADH-dependent fumara 28.2 64 0.0014 37.0 4.1 42 362-403 858-904 (1167)
399 COG0492 TrxB Thioredoxin reduc 27.6 64 0.0014 30.7 3.4 41 360-402 261-301 (305)
400 PRK07512 L-aspartate oxidase; 27.6 83 0.0018 32.4 4.5 42 360-401 350-397 (513)
401 PRK06327 dihydrolipoamide dehy 27.4 85 0.0018 31.9 4.5 37 360-399 310-346 (475)
402 COG3634 AhpF Alkyl hydroperoxi 27.3 94 0.002 30.1 4.3 57 163-219 267-324 (520)
403 TIGR01350 lipoamide_DH dihydro 26.9 83 0.0018 31.7 4.3 37 361-400 296-332 (461)
404 PRK06115 dihydrolipoamide dehy 26.5 80 0.0017 32.0 4.1 38 360-400 301-338 (466)
405 PLN02815 L-aspartate oxidase 26.1 1E+02 0.0023 32.4 4.9 43 359-401 385-433 (594)
406 COG0029 NadB Aspartate oxidase 25.9 1.2E+02 0.0026 30.8 4.9 44 359-402 349-398 (518)
407 PRK08401 L-aspartate oxidase; 25.3 1.1E+02 0.0023 31.1 4.8 41 360-400 319-365 (466)
408 COG1252 Ndh NADH dehydrogenase 25.1 1.3E+02 0.0028 29.9 5.0 40 362-402 289-332 (405)
409 COG1148 HdrA Heterodisulfide r 24.9 1.4E+02 0.0031 30.3 5.2 39 361-403 508-546 (622)
410 COG1445 FrwB Phosphotransferas 24.8 49 0.0011 26.5 1.7 49 165-221 21-69 (122)
411 TIGR02053 MerA mercuric reduct 24.8 99 0.0021 31.2 4.4 38 360-400 292-329 (463)
412 PRK06854 adenylylsulfate reduc 24.6 1.1E+02 0.0024 32.2 4.9 43 358-401 389-431 (608)
413 PRK09853 putative selenate red 24.6 2E+02 0.0044 32.4 6.8 49 174-225 719-784 (1019)
414 PF03486 HI0933_like: HI0933-l 24.1 72 0.0016 31.8 3.2 34 362-395 373-408 (409)
415 PRK06912 acoL dihydrolipoamide 24.0 94 0.002 31.4 4.1 37 360-399 293-329 (458)
416 PRK08626 fumarate reductase fl 24.0 3E+02 0.0064 29.5 7.9 43 360-402 381-430 (657)
417 PLN02546 glutathione reductase 23.5 1E+02 0.0022 32.2 4.2 37 360-399 376-412 (558)
418 PRK06444 prephenate dehydrogen 23.4 1.6E+02 0.0035 25.9 4.9 20 208-227 31-50 (197)
419 PRK13800 putative oxidoreducta 22.7 90 0.002 34.7 3.9 40 360-401 370-409 (897)
420 PRK07057 sdhA succinate dehydr 22.4 1.1E+02 0.0023 32.3 4.2 40 362-401 381-426 (591)
421 TIGR03452 mycothione_red mycot 22.0 1.1E+02 0.0025 30.7 4.2 38 360-400 291-328 (452)
422 COG0302 FolE GTP cyclohydrolas 21.9 2E+02 0.0042 25.2 4.8 38 390-435 15-52 (195)
423 PRK12814 putative NADPH-depend 21.8 2.8E+02 0.006 29.6 7.2 45 173-219 372-436 (652)
424 PRK07804 L-aspartate oxidase; 21.5 1.4E+02 0.0029 31.1 4.7 43 359-401 365-413 (541)
425 PF03807 F420_oxidored: NADP o 21.4 74 0.0016 23.8 2.1 20 208-227 61-80 (96)
426 PRK07846 mycothione reductase; 21.0 1.3E+02 0.0029 30.3 4.4 37 360-399 288-324 (451)
427 KOG4716 Thioredoxin reductase 20.6 97 0.0021 29.8 3.0 35 361-397 328-362 (503)
428 TIGR00275 flavoprotein, HI0933 20.3 84 0.0018 31.1 2.8 32 363-394 366-399 (400)
No 1
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=4.3e-45 Score=369.31 Aligned_cols=396 Identities=20% Similarity=0.271 Sum_probs=304.7
Q ss_pred CccccCCChhHHHHHHHhCCCCCCCCcc-ccee-ccCCccccccccccCCCCCCCccccc-cccCCCCChhhhhhhhh--
Q 013390 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK-SAQY-SEEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLP-- 75 (444)
Q Consensus 1 ~h~~~~~~~~~~~Ll~elGl~~~~~~~~-~~~~-~~~G~~~~~~~~~~~~~~p~p~~~~~-~~~~~~ls~~~kl~~~~-- 75 (444)
+|.|+++|+++++++++||+++...+.. ...| ..+|+.... .+. + +++.|++... +++++.+++.+|++++.
T Consensus 129 ~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~~-~~~-~-p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l 205 (569)
T PLN02487 129 LHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFVNKGGDVGEL-DFR-F-PVGAPLHGIKAFLTTNQLEPYDKARNALAL 205 (569)
T ss_pred eeEecCCcHHHHHHHHhcCCcccccccccceeEEecCCEEeee-ccC-C-CCCchhhhHHHHHcCCCCCHHHHHhhcccc
Confidence 5999999999999999999987765543 3333 234543211 111 1 4666775554 78899999999998632
Q ss_pred ----hHHHHhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCCCc
Q 013390 76 ----LMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNF 151 (444)
Q Consensus 76 ----l~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~ 151 (444)
++..+.+.+...+.+..++++|+.+|+++++.+++++++||+|++.+.++.+++++|+.+++..|..+. ....+.
T Consensus 206 ~~~~~~~al~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~-~~~~~~ 284 (569)
T PLN02487 206 ATSPVVRALVDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFA-TKTEAS 284 (569)
T ss_pred cccchhhhccCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh-hcCCcc
Confidence 111111111012234457889999999999888889999999999999999999999999999986432 234456
Q ss_pred ceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCC-CC--eEEEEEe--C--CeEEecCEEEEccChhhHHHh
Q 013390 152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE-RC--CISDVVC--G--KETYSAGAVVLAVGISTLQEL 224 (444)
Q Consensus 152 ~~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~-~g--~v~~v~~--~--g~~~~ad~VI~a~p~~~~~~l 224 (444)
++.|++||+++.|++++++.|+++|++|+++++|++|+.+++ +| ++++|.+ + ++++.||+||+|+|++.+.+|
T Consensus 285 ~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~L 364 (569)
T PLN02487 285 LLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRL 364 (569)
T ss_pred eeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHh
Confidence 789999998877999999999999999999999999999742 13 3777877 3 457899999999999999999
Q ss_pred hhccCCCChHHHHHhhcCCCccEEEEEEEeccCCCCCCCCc------eeeccCC-----Ccccc-eeecccccc-cc-CC
Q 013390 225 IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN------ACSGFGD-----SLAWT-FFDLNKIYD-EH-KD 290 (444)
Q Consensus 225 l~~~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~------~~~g~~~-----~~~~~-~~d~~~~~~-~~-~~ 290 (444)
+++. ++..+.+..+..+.+.++++++|+||+++..+.+.+ .+.|++. ...|. ++|.....+ .+ .+
T Consensus 365 lp~~-~~~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~ 443 (569)
T PLN02487 365 LPEQ-WREYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKE 443 (569)
T ss_pred CCch-hhccHHHhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHccc
Confidence 9875 323455788899999999999999999876433110 0223321 22232 235321111 12 22
Q ss_pred CCCeEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCCCCCCCEEEe
Q 013390 291 DSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMA 370 (444)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~~~~~~l~la 370 (444)
.+++++.+++++++++..++++|++++++++|.++||......+.+..+++.+++++.+.||+...||..+|+++|||+|
T Consensus 444 ~~g~~l~~vis~a~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LA 523 (569)
T PLN02487 444 GEGSLIQAVLTPGDPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLA 523 (569)
T ss_pred CCceEEEEEEcCCccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEe
Confidence 35688888888888999999999999999999999999766568888999999999999999998899999999999999
Q ss_pred ecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 371 GDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 371 Gd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
||||.++|| .+||||++||..||+.|++..+
T Consensus 524 GD~t~~~yP-at~EgAv~SG~~AA~~i~~~~~ 554 (569)
T PLN02487 524 GSYTKQDYI-DSMEGATLSGRQAAAYICEAGE 554 (569)
T ss_pred CcccccCCc-chHHHHHHHHHHHHHHHHHHhh
Confidence 999999999 7999999999999999988753
No 2
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=9.4e-43 Score=350.22 Aligned_cols=392 Identities=19% Similarity=0.288 Sum_probs=294.6
Q ss_pred CccccCCChhHHHHHHHhCCCCCCCCcc-cceec-cCCccccccccccCCCCCCCccccc-cccCCCCChhhhhhhhhhH
Q 013390 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK-SAQYS-EEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPLM 77 (444)
Q Consensus 1 ~h~~~~~~~~~~~Ll~elGl~~~~~~~~-~~~~~-~~G~~~~~~~~~~~~~~p~p~~~~~-~~~~~~ls~~~kl~~~~l~ 77 (444)
.|+|++.|++++++++++|+.+...+.. ...+. .+|+... ..+. . ++|.|++... +++++.+++.+|++++...
T Consensus 53 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-~~~~P~~~~~~~l~~~~ls~~dklr~~~~~ 129 (474)
T TIGR02732 53 LHVFFGCYANLFRLMKKVGAEDNLLLKEHTHTFVNKGGDIGE-LDFR-F-ATGAPFNGLKAFFTTSQLKWVDKLRNALAL 129 (474)
T ss_pred eEEecCchHHHHHHHHHcCCccccccccceeEEEcCCCcccc-cccC-C-CCCCchhhhHHHhcCCCCCHHHHHHHHHHh
Confidence 4899999999999999999987765543 33333 2343211 0111 1 3566766544 6788999999999865422
Q ss_pred --HHHh----hcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCCCc
Q 013390 78 --AAVI----DFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNF 151 (444)
Q Consensus 78 --~~~~----~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~ 151 (444)
.... +++...+.+..++++|+.+|+++++.++.++++||+|++.++++.+++++|+.+++.+++.+. ....++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~-~~~~~s 208 (474)
T TIGR02732 130 GTSPIVRGLVDYDGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFA-AKTEAS 208 (474)
T ss_pred hhhHHHhhccccchhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hCCCcc
Confidence 1111 111111334467889999999999888888999999999999999999999999999887553 345566
Q ss_pred ceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCC-CC--eEEEEEeC-C---eEEecCEEEEccChhhHHHh
Q 013390 152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE-RC--CISDVVCG-K---ETYSAGAVVLAVGISTLQEL 224 (444)
Q Consensus 152 ~~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~-~g--~v~~v~~~-g---~~~~ad~VI~a~p~~~~~~l 224 (444)
.+.+++||+++.+.+++.+.|++.|++|++|++|++|+.+++ ++ ++++|.++ | +++.||+||+|+|++.+.+|
T Consensus 209 ~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~L 288 (474)
T TIGR02732 209 KLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRL 288 (474)
T ss_pred eeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhh
Confidence 788899998877889999999999999999999999998641 12 36666663 3 56899999999999999999
Q ss_pred hhccCCCChHHHHHhhcCCCccEEEEEEEeccCCCCCCCCc------eeeccC-----CCcccc-eeecccccc-ccC-C
Q 013390 225 IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN------ACSGFG-----DSLAWT-FFDLNKIYD-EHK-D 290 (444)
Q Consensus 225 l~~~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~------~~~g~~-----~~~~~~-~~d~~~~~~-~~~-~ 290 (444)
+++. .+..+.+..+..+.+.++.+|+++|++++..+.+.+ .+.+.+ ....|. ++|.+...+ .+. +
T Consensus 289 l~~~-~~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (474)
T TIGR02732 289 LPQE-WRQFEEFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKE 367 (474)
T ss_pred CChh-hhcCHHHhhHhcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhcc
Confidence 9874 212345567888999999999999998775432110 011111 111222 234332212 231 2
Q ss_pred CCCeEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCCCCCCCEEEe
Q 013390 291 DSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMA 370 (444)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~~~~~~l~la 370 (444)
..+.+++++++.++++.+++++|+++.++++|.++||......+.+.++.+.+++++.+.||+..++|..+++++|||+|
T Consensus 368 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lA 447 (474)
T TIGR02732 368 GQGSLLQCVLTPGDPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLA 447 (474)
T ss_pred CCCeEEEEEEeChhhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEe
Confidence 34566777777777888899999999999999999998765568888899999999999999988899999999999999
Q ss_pred ecccccCCCcchhhHHHHHHHHHHHHHH
Q 013390 371 GDWITTRHGSWSQERSYVTGLEAANRVV 398 (444)
Q Consensus 371 Gd~~~~~~~~~~~egAv~SG~~aA~~il 398 (444)
|||+.++|| ++||||++||++||+.|+
T Consensus 448 GD~t~~~~p-as~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 448 GSYTQQDYI-DSMEGATLSGRQAAAAIL 474 (474)
T ss_pred ccccccCch-HHHhHHHHHHHHHHHHhC
Confidence 999999999 899999999999999874
No 3
>PLN02612 phytoene desaturase
Probab=100.00 E-value=2.4e-41 Score=346.27 Aligned_cols=390 Identities=18% Similarity=0.292 Sum_probs=296.1
Q ss_pred CccccCCChhHHHHHHHhCCCCCCCCcc-ccee-cc--CCccccccccccCCC-CCCCccccc-cc-cCCCCChhhhhhh
Q 013390 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK-SAQY-SE--EGLEVEFPIFQDLNQ-LPTPLGTLF-YT-QFSRLPLVDRLTS 73 (444)
Q Consensus 1 ~h~~~~~~~~~~~Ll~elGl~~~~~~~~-~~~~-~~--~G~~~~~~~~~~~~~-~p~p~~~~~-~~-~~~~ls~~~kl~~ 73 (444)
.|.|++.|+++.+|++|||+++...+.. ..++ .. ++. +. .+. .|. +|.|++... ++ ..+.+++.+|+++
T Consensus 147 ~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~-~~--~~~-~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~ 222 (567)
T PLN02612 147 LHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGE-FS--RFD-FPEVLPAPLNGIWAILRNNEMLTWPEKIKF 222 (567)
T ss_pred ceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCc-ee--eCc-CchhcCChhhhhHHHHhcCccCCHHHHHHH
Confidence 4899999999999999999988777653 3333 22 122 11 111 222 566655433 44 4577899999986
Q ss_pred hh-hHHHHhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCCCcc
Q 013390 74 LP-LMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFD 152 (444)
Q Consensus 74 ~~-l~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~ 152 (444)
+. ++..... ..+.+.++|++|+.+|+++++.++.+.+.+|++++.+.++.+++++|+..++..+..+ +....++.
T Consensus 223 ~~~~~~~~~~---~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~-l~~~~gs~ 298 (567)
T PLN02612 223 AIGLLPAIVG---GQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRF-LQEKHGSK 298 (567)
T ss_pred HHhhhHHhcc---cchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHH-HhccCCce
Confidence 43 3222111 1223456889999999999999999999999999999999999999999999888765 35455667
Q ss_pred eeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHhhhccCCC
Q 013390 153 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILC 231 (444)
Q Consensus 153 ~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~~~~ll~~~~l~ 231 (444)
..++.|++.+.++++|++.+++.|++|++|++|++|+.+++ +++++|.+ +|+++.||+||+|+|++.+..|+++...
T Consensus 299 ~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~-g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~- 376 (567)
T PLN02612 299 MAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDD-GTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWK- 376 (567)
T ss_pred EeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCC-CcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhc-
Confidence 77888886567999999999999999999999999998765 55555665 5788999999999999999988876422
Q ss_pred ChHHHHHhhcCCCccEEEEEEEeccCCCCCCCCceeeccCCCcccceeeccccccccCCCCCeEEEEEEecCCCCCCCCH
Q 013390 232 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKD 311 (444)
Q Consensus 232 ~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (444)
+.++++.++++.+.++++++++||++++.+..+ .++. .......++|++..+..+.+++.+++.+++..+++|..+++
T Consensus 377 ~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~~~-~~~~-~~~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~~sd 454 (567)
T PLN02612 377 EIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDH-LLFS-RSPLLSVYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSD 454 (567)
T ss_pred CcHHHHHHHhcCCCCeEEEEEEECcccCCCCCc-eeec-CCCCceeehhhhhcchhhcCCCCeEEEEEEEcChhhhcCCH
Confidence 235556777788889999999999998643222 2222 11222234555544444444456777776667778999999
Q ss_pred HHHHHHHHHHHHhhccCCC-----CCeeeeEEEEEeCCCccccCCCCCCCCCCCCCCCCCEEEeecccccCCCcchhhHH
Q 013390 312 DQVVAKAVSYLSKCIKDFS-----TATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERS 386 (444)
Q Consensus 312 ee~~~~~l~~l~~~~p~~~-----~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~~~~~~l~laGd~~~~~~~~~~~egA 386 (444)
+|+++.++++|+++||+.. ...++.+.+.+.|.+.+.+.||....+|.+++|++||||||||+.++|+ ++||||
T Consensus 455 eei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~-~smeGA 533 (567)
T PLN02612 455 EDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYL-ASMEGA 533 (567)
T ss_pred HHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCch-hhHHHH
Confidence 9999999999999999752 2356677777889988888888877788888999999999999999999 799999
Q ss_pred HHHHHHHHHHHHHHhCC
Q 013390 387 YVTGLEAANRVVDYLGD 403 (444)
Q Consensus 387 v~SG~~aA~~il~~lg~ 403 (444)
+.||++||++|+++++.
T Consensus 534 v~SG~~AA~~I~~~~~~ 550 (567)
T PLN02612 534 VLSGKLCAQSIVQDYEL 550 (567)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999999864
No 4
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=2.9e-38 Score=318.37 Aligned_cols=384 Identities=21% Similarity=0.353 Sum_probs=277.8
Q ss_pred CccccCCChhHHHHHHHhCCCCCCCCcc-cceecc---CCccccccccccCCCCCCCccccc-ccc-CCCCChhhhhhhh
Q 013390 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK-SAQYSE---EGLEVEFPIFQDLNQLPTPLGTLF-YTQ-FSRLPLVDRLTSL 74 (444)
Q Consensus 1 ~h~~~~~~~~~~~Ll~elGl~~~~~~~~-~~~~~~---~G~~~~~~~~~~~~~~p~p~~~~~-~~~-~~~ls~~~kl~~~ 74 (444)
.|.|++.|+++++++++||+.+.+.+.. ..++.. +|+.. .+. .|.+|.|++... +++ .+.+++.+|++++
T Consensus 53 ~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (453)
T TIGR02731 53 LHIFFGAYPNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFS---RFD-FPDIPAPFNGVAAILRNNDMLTWPEKIKFA 128 (453)
T ss_pred cceeccCCchHHHHHHHcCCccceeecCCceEEecCCCCccee---ecc-CCCCCCCHHHHHHHhcCcCCCCHHHHHHHH
Confidence 4888999999999999999987765543 333322 22211 122 345666665433 333 3468999999865
Q ss_pred h-hHHHHhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCCCcce
Q 013390 75 P-LMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDL 153 (444)
Q Consensus 75 ~-l~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~ 153 (444)
. +...... ..+.+.++|++|+.+|+++.++++.+.+.+++|++.++++.+|+++|+.+++.++..++ ....+...
T Consensus 129 ~~~~~~~~~---~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~-~~~~g~~~ 204 (453)
T TIGR02731 129 IGLLPAIVR---GQKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFL-QERHGSKM 204 (453)
T ss_pred HHhHHHHhc---CccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-hcCCCCee
Confidence 4 2222111 11234567999999999999999999999999999999999999999999999887754 33334444
Q ss_pred eeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-Ce-----EEecCEEEEccChhhHHHhhhc
Q 013390 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE-----TYSAGAVVLAVGISTLQELIKN 227 (444)
Q Consensus 154 ~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~-----~~~ad~VI~a~p~~~~~~ll~~ 227 (444)
.+..|+....++++|.+.+++.|++|++|++|++|+.+++ |++++|++. ++ ++.||+||+|+|++.+.+|++.
T Consensus 205 ~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~-~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~ 283 (453)
T TIGR02731 205 AFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNED-GSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQ 283 (453)
T ss_pred EeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCC-CCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCch
Confidence 5666665566999999999999999999999999987664 557667763 44 7899999999999999999865
Q ss_pred cCCCChHHHHHhhcCCCccEEEEEEEeccCCCCCCCCceeeccCCCcccceeeccccccccCCCCCeEEEEEEecCCCCC
Q 013390 228 SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELM 307 (444)
Q Consensus 228 ~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (444)
. .+.....+.+.++++.++++++++++++++.+.. .++..+ +.....++.+.....+.+++++++++.+...+.+.
T Consensus 284 ~-~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~--~~~~~~-~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~ 359 (453)
T TIGR02731 284 P-WKQMPFFQKLNGLEGVPVINVHIWFDRKLTTVDH--LLFSRS-PLLSVYADMSETCKEYADPDKSMLELVFAPAADWI 359 (453)
T ss_pred h-hhcCHHHHHhhcCCCCcEEEEEEEEccccCCCCc--eeeeCC-CcceeecchhhhChhhcCCCCeEEEEEecChhhhh
Confidence 3 1113344667777888999999999999763221 122211 11111222222212222234566665555556778
Q ss_pred CCCHHHHHHHHHHHHHhhccCC----CCCeeeeEEEEEeCCCccccCCCCCCCCCCCCCCCCCEEEeecccccCCCcchh
Q 013390 308 PLKDDQVVAKAVSYLSKCIKDF----STATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQ 383 (444)
Q Consensus 308 ~~~~ee~~~~~l~~l~~~~p~~----~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~~~~~~l~laGd~~~~~~~~~~~ 383 (444)
.++++|+++.++++|+++||.. ...+++++.+.+.|++.+.+.||...++|..++|++||||||+|++++|+ ++|
T Consensus 360 ~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~-g~~ 438 (453)
T TIGR02731 360 GRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYL-ASM 438 (453)
T ss_pred cCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCccc-ccH
Confidence 8999999999999999999852 22356777777889988777888666778888999999999999999999 799
Q ss_pred hHHHHHHHHHHHHHH
Q 013390 384 ERSYVTGLEAANRVV 398 (444)
Q Consensus 384 egAv~SG~~aA~~il 398 (444)
|||++||++||++|+
T Consensus 439 egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 439 EGAVLSGKLCAQAIV 453 (453)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999873
No 5
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=8.8e-38 Score=312.34 Aligned_cols=374 Identities=25% Similarity=0.320 Sum_probs=275.7
Q ss_pred CccccCCChhHHHHHHHhCCCCCCCCcc-cceec-cCCccccccccccCCCCCCCccccc-cccCCCCChhhhhhhhhhH
Q 013390 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK-SAQYS-EEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPLM 77 (444)
Q Consensus 1 ~h~~~~~~~~~~~Ll~elGl~~~~~~~~-~~~~~-~~G~~~~~~~~~~~~~~p~p~~~~~-~~~~~~ls~~~kl~~~~l~ 77 (444)
.|.|++.|+++++|++|||++....+.. ...+. .+|+... +. ..++|.|++... +.+++.+++.+|.++.+.+
T Consensus 42 ~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~ 117 (419)
T TIGR03467 42 QHVLLGAYTNLLALLRRIGAEPRLQGPRLPLPFYDPGGRLSR---LR-LSRLPAPLHLARGLLRAPGLSWADKLALARAL 117 (419)
T ss_pred CEEEEcccHHHHHHHHHhCCchhhhcccCCcceecCCCCcee---ec-CCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3889999999999999999987655322 22232 3343211 22 124566766433 5677889999999977654
Q ss_pred HHHhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCCCcceeeec
Q 013390 78 AAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCR 157 (444)
Q Consensus 78 ~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~ 157 (444)
..+.+.. ...++++|+.+|++++++++++.+.|++|++.++++.+++++|+.+++..++..+.....+..+.+++
T Consensus 118 ~~~~~~~-----~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (419)
T TIGR03467 118 LALRRTR-----FRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPR 192 (419)
T ss_pred HHHHhcC-----ccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeC
Confidence 4332211 13478999999999988899999999999999999999999999999888765432222334578889
Q ss_pred CCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEE-eCCeEEecCEEEEccChhhHHHhhhccCCCChHHH
Q 013390 158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV-CGKETYSAGAVVLAVGISTLQELIKNSILCNREEF 236 (444)
Q Consensus 158 gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~-~~g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~ 236 (444)
||+++.+.++|++.+++.|++|++|++|++|..++ ++|+.+. .+|+++.||+||+|+|++++.+|++++ ...
T Consensus 193 gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~--~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~-----~~~ 265 (419)
T TIGR03467 193 VPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANA--GGIRALVLSGGETLPADAVVLAVPPRHAASLLPGE-----DLG 265 (419)
T ss_pred CCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcC--CcceEEEecCCccccCCEEEEcCCHHHHHHhCCCc-----hHH
Confidence 99777566779999988999999999999999987 4454333 357789999999999999999997652 233
Q ss_pred HHhhcCCCccEEEEEEEeccCCCCCCCCceeeccCCCcccceeeccccccccCCCCCeEEEEEEecCCCCCCCCHHHHHH
Q 013390 237 LKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVA 316 (444)
Q Consensus 237 ~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~ 316 (444)
+.++++++.++.++++.|++++|.+.++..+. .....| +++.+.. . +...++.+......++..++++++.+
T Consensus 266 ~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~e~~~~ 337 (419)
T TIGR03467 266 ALLTALGYSPITTVHLRLDRAVRLPAPMVGLV--GGLAQW-LFDRGQL----A-GEPGYLAVVISAARDLVDLPREELAD 337 (419)
T ss_pred HHHhhcCCcceEEEEEEeCCCcCCCCCeeeec--CCceeE-EEECCcC----C-CCCCEEEEEEecchhhccCCHHHHHH
Confidence 56788899999999999999986444321121 122233 2443211 1 12233333334456677889999999
Q ss_pred HHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHH
Q 013390 317 KAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANR 396 (444)
Q Consensus 317 ~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~ 396 (444)
.++++|++++|......+++..+.+|.++.+.+.||....+|...++.+|||||||+++++++ ++||||+.||.+||++
T Consensus 338 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~-~~~egA~~SG~~aA~~ 416 (419)
T TIGR03467 338 RIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRLRPGARTPWPNLFLAGDWTATGWP-ATMEGAVRSGYQAAEA 416 (419)
T ss_pred HHHHHHHHhcCccccCCccceEEEEccCCccccCCcccccCCCCCCCcCCEEEecccccCCCc-chHHHHHHHHHHHHHH
Confidence 999999999997643346677788898888888888766677777889999999999998888 7999999999999999
Q ss_pred HHH
Q 013390 397 VVD 399 (444)
Q Consensus 397 il~ 399 (444)
|++
T Consensus 417 i~~ 419 (419)
T TIGR03467 417 VLK 419 (419)
T ss_pred HhC
Confidence 863
No 6
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=5.8e-33 Score=278.86 Aligned_cols=375 Identities=19% Similarity=0.250 Sum_probs=265.5
Q ss_pred CccccCCChhHHHHHHHhCCCCCCCCcc--cceeccCCccccccccccCCCCCCCccccccccCCCCChhhhhhhhhhHH
Q 013390 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK--SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA 78 (444)
Q Consensus 1 ~h~~~~~~~~~~~Ll~elGl~~~~~~~~--~~~~~~~G~~~~~~~~~~~~~~p~p~~~~~~~~~~~ls~~~kl~~~~l~~ 78 (444)
.|.|++.++++.+|++++|+++...+.. ..++ .+|+.+ +++.|.+ +++++.+++.++++......
T Consensus 52 ~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 118 (434)
T PRK07233 52 YHHIFKSDEALLELLDELGLEDKLRWRETKTGYY-VDGKLY---------PLGTPLE---LLRFPHLSLIDKFRLGLLTL 118 (434)
T ss_pred hhhhccccHHHHHHHHHcCCCCceeeccCceEEE-ECCeEe---------cCCCHHH---HHcCCCCCHHHHHHhHHHHH
Confidence 4889999999999999999986655442 2333 355421 2222332 34566778888887543322
Q ss_pred HHhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcC--CCcceeee
Q 013390 79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ--KNFDLVWC 156 (444)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~--~~~~~~~~ 156 (444)
.. .. .....+++++|+++|++++ .+++..+.|++|++...++.+++++|+.+++..+........ ....+.++
T Consensus 119 ~~-~~---~~~~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (434)
T PRK07233 119 LA-RR---IKDWRALDKVPAEEWLRRW-SGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYL 193 (434)
T ss_pred hh-hh---cccccccccccHHHHHHHh-cCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEecc
Confidence 21 11 1123357889999999997 577778999999999999999999999988776654321111 12236678
Q ss_pred cCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhccCCCChHHH
Q 013390 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEF 236 (444)
Q Consensus 157 ~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~ 236 (444)
+||+. .++++|++.+++.|++|++|++|++|+.++ ++++++..++++++||+||+|+|++.+.++++.. + ....
T Consensus 194 ~gG~~-~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~--~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~~--~-~~~~ 267 (434)
T PRK07233 194 EGGFA-TLIDALAEAIEARGGEIRLGTPVTSVVIDG--GGVTGVEVDGEEEDFDAVISTAPPPILARLVPDL--P-ADVL 267 (434)
T ss_pred CCCHH-HHHHHHHHHHHhcCceEEeCCCeeEEEEcC--CceEEEEeCCceEECCEEEECCCHHHHHhhcCCC--c-HHHH
Confidence 99965 599999999999999999999999999876 4576566677889999999999999999988542 1 3334
Q ss_pred HHhhcCCCccEEEEEEEeccCCCCCCCCceeeccCCCcccceeeccccccccCCCCCeEEEEE-Eec-CCCCCCCCHHHH
Q 013390 237 LKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD-FYH-ANELMPLKDDQV 314 (444)
Q Consensus 237 ~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~ee~ 314 (444)
+.++.+.+.+..+++++++++... ..+....+.+..... ++..+...+...+++.+++.+. +.. .+.+..++++++
T Consensus 268 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 345 (434)
T PRK07233 268 ARLRRIDYQGVVCMVLKLRRPLTD-YYWLNINDPGAPFGG-VIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEEL 345 (434)
T ss_pred hhhcccCccceEEEEEEecCCCCC-CceeeecCCCCCcce-EEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHH
Confidence 567788888899999999988642 111111111111222 2222333222221244443322 322 233456789999
Q ss_pred HHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCCCCCCCEEEeecccccCCCcchhhHHHHHHHHHH
Q 013390 315 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAA 394 (444)
Q Consensus 315 ~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA 394 (444)
++.++++|++++|++....+++..+.+|+++.+.+.||+...++...++++|||||||++...++ ++||+|+.||++||
T Consensus 346 ~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~-~~~~~Ai~sG~~aA 424 (434)
T PRK07233 346 LDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPED-RSINGSVRAGRRVA 424 (434)
T ss_pred HHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchhhcCCCcccCcCCEEEeCCcccCCcc-CchhHHHHHHHHHH
Confidence 99999999999998755568888899999999999898766777777889999999996544455 69999999999999
Q ss_pred HHHHHHhC
Q 013390 395 NRVVDYLG 402 (444)
Q Consensus 395 ~~il~~lg 402 (444)
++|++.+.
T Consensus 425 ~~i~~~~~ 432 (434)
T PRK07233 425 REILEDRR 432 (434)
T ss_pred HHHhhhhc
Confidence 99998764
No 7
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.98 E-value=2.6e-30 Score=251.30 Aligned_cols=361 Identities=19% Similarity=0.235 Sum_probs=251.5
Q ss_pred ccccCCChhHHHHHHHhCCCCCCCCcc--cceeccCCccccccccccCCCCCCCccccccccCCCCChhhhhhhhhhHHH
Q 013390 2 QGFWYPFRNIFSLVDELGIKPFTGWMK--SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAA 79 (444)
Q Consensus 2 h~~~~~~~~~~~Ll~elGl~~~~~~~~--~~~~~~~G~~~~~~~~~~~~~~p~p~~~~~~~~~~~ls~~~kl~~~~l~~~ 79 (444)
|+|+...+++++|++|||+++++.+.. ..+++.+|+ ++ ++|.+. + +..+.+...+.+..++.+..
T Consensus 56 ~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~~gk------l~---p~P~~~-i---~~ip~~~~~~~~~~~~~~~~ 122 (444)
T COG1232 56 HHFLARKEEILDLIKELGLEDKLLWNSTARKYIYYDGK------LH---PIPTPT-I---LGIPLLLLSSEAGLARALQE 122 (444)
T ss_pred hheecchHHHHHHHHHhCcHHhhccCCcccceEeeCCc------EE---ECCccc-e---eecCCccccchhHHHHHHHh
Confidence 566666799999999999999998773 453446787 33 455444 2 23333333233333333222
Q ss_pred HhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcC-----------
Q 013390 80 VIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ----------- 148 (444)
Q Consensus 80 ~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~----------- 148 (444)
+.. .+.+...+++|+++|++++ +++++.++|++|++.++|+.+++++|+....+.+........
T Consensus 123 ~~~----~~~~~~~~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~ 197 (444)
T COG1232 123 FIR----PKSWEPKQDISVGEFIRRR-FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGL 197 (444)
T ss_pred hhc----ccCCCCCCCcCHHHHHHHH-HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccC
Confidence 211 2234557899999999996 899999999999999999999999999966655443310000
Q ss_pred -C----CcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHH
Q 013390 149 -K----NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 223 (444)
Q Consensus 149 -~----~~~~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ 223 (444)
. ...+.+++||++ +|++++++.++.. |++|++|++|..++. + .+.+..+|++++||.||+|+|++.+..
T Consensus 198 ~~~~~~~~~~~~~~gG~~-~l~~al~~~l~~~---i~~~~~V~~i~~~~~-~-~~~~~~~g~~~~~D~VI~t~p~~~l~~ 271 (444)
T COG1232 198 PKQSLKKEKFGYLRGGLQ-SLIEALAEKLEAK---IRTGTEVTKIDKKGA-G-KTIVDVGGEKITADGVISTAPLPELAR 271 (444)
T ss_pred cccccccccccccCccHH-HHHHHHHHHhhhc---eeecceeeEEEEcCC-c-cEEEEcCCceEEcceEEEcCCHHHHHH
Confidence 0 123567889976 4999999988754 999999999999863 3 554566788899999999999999999
Q ss_pred hhhccCCCChHHHHHhhcCCCccEEEEEEEeccCC--CCCCCCceeeccCCC-cccceeeccccccccCCCCCeEEEEEE
Q 013390 224 LIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKV--TVPNVSNACSGFGDS-LAWTFFDLNKIYDEHKDDSATVIQADF 300 (444)
Q Consensus 224 ll~~~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~--~~~~~~~~~~g~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~ 300 (444)
++++.. ..+...++.+.++++|.+.++++. ..++.+..+...+.. ...++|+ ++..+...+.+.+++.+.+
T Consensus 272 ll~~~~-----~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~-S~~~p~~~p~g~~ll~~~~ 345 (444)
T COG1232 272 LLGDEA-----VSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFH-SNKWPHEAPEGKTLLRVEF 345 (444)
T ss_pred HcCCcc-----hhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEEEe-cccCCCCCCCCcEEEEEEe
Confidence 998832 124567788888999999998862 212221112111112 2233444 4333433323455665555
Q ss_pred e-c-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCC----CCCCCCCEEEeeccc
Q 013390 301 Y-H-ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR----GFTSFPNLFMAGDWI 374 (444)
Q Consensus 301 ~-~-~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~----~~~~~~~l~laGd~~ 374 (444)
+ . .+....+++||+++.++++|.++++.... +++..+.||+++.|.|.+|+...+.. ..+..+||+.+|.|.
T Consensus 346 ~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~~--~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~ 423 (444)
T COG1232 346 GGPGDESVSTMSDEELVAAVLDDLKKLGGINGD--PVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYG 423 (444)
T ss_pred ecCCCcchhccCHHHHHHHHHHHHHHHcCcCcc--hhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCC
Confidence 4 2 33445678999999999999999998763 45888999999999999998764332 222347999999987
Q ss_pred ccCCCcchhhHHHHHHHHHHHHHH
Q 013390 375 TTRHGSWSQERSYVTGLEAANRVV 398 (444)
Q Consensus 375 ~~~~~~~~~egAv~SG~~aA~~il 398 (444)
. ++ ++.+||.+|..||++|+
T Consensus 424 ~--g~--g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 424 E--GV--GLPDCIAAGKEAAEQLL 443 (444)
T ss_pred C--CC--CchHHHHHHHHHHHHhh
Confidence 5 22 68899999999999886
No 8
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.97 E-value=5.2e-30 Score=259.15 Aligned_cols=369 Identities=13% Similarity=0.135 Sum_probs=249.4
Q ss_pred ccccCCChhHHHHHHHhCCCCCCCCcc--cceeccCCccccccccccCCC-CCCCccccccccCCCCChhhhhhhhhhHH
Q 013390 2 QGFWYPFRNIFSLVDELGIKPFTGWMK--SAQYSEEGLEVEFPIFQDLNQ-LPTPLGTLFYTQFSRLPLVDRLTSLPLMA 78 (444)
Q Consensus 2 h~~~~~~~~~~~Ll~elGl~~~~~~~~--~~~~~~~G~~~~~~~~~~~~~-~p~p~~~~~~~~~~~ls~~~kl~~~~l~~ 78 (444)
|.+...++++++|+++||+++.+.+.. ..+++.+|+... +. ... ...|.+...+++.+.+++.+|++.+.-..
T Consensus 61 ~~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~---~p-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (463)
T PRK12416 61 DSIVARNEHVMPLVKDLNLEEEMVYNETGISYIYSDNTLHP---IP-SDTIFGIPMSVESLFSSTLVSTKGKIVALKDFI 136 (463)
T ss_pred HHHhcCCHHHHHHHHHcCCccceecCCCCceEEEECCeEEE---CC-CCCeecCCCChHHhhcCCcCCHHHHHHhhhhhc
Confidence 677788999999999999987765442 222223443111 00 000 01133433456777888888887653211
Q ss_pred HHhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHH----------h--
Q 013390 79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL----------A-- 146 (444)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~----------~-- 146 (444)
.. .. ...+++|+.+|++++ +++++.+++++|++.++|+.+++++|+..++..+..+.- .
T Consensus 137 ---~~--~~---~~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~ 207 (463)
T PRK12416 137 ---TK--NK---EFTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENK 207 (463)
T ss_pred ---cC--CC---CCCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhh
Confidence 10 11 124789999999985 788889999999999999999999998766555433210 0
Q ss_pred ----cCCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH
Q 013390 147 ----HQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (444)
Q Consensus 147 ----~~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~~ 221 (444)
..+...+.+++|||+. |+++|++.+++ ++|++|++|++|+.++ +++. |.+ +|+++.||+||+|+|++++
T Consensus 208 ~~~~~~~~~~~~~~~gG~~~-l~~~l~~~l~~--~~i~~~~~V~~I~~~~--~~~~-v~~~~g~~~~ad~VI~a~p~~~~ 281 (463)
T PRK12416 208 KQFQSAGNKKFVSFKGGLST-IIDRLEEVLTE--TVVKKGAVTTAVSKQG--DRYE-ISFANHESIQADYVVLAAPHDIA 281 (463)
T ss_pred hccCCCCCCceEeeCCCHHH-HHHHHHHhccc--ccEEcCCEEEEEEEcC--CEEE-EEECCCCEEEeCEEEECCCHHHH
Confidence 0112335578999765 99999988854 6899999999999887 4564 555 4778899999999999999
Q ss_pred HHhhhccCCCChHHHHHhhcCCCccEEEEEEEeccCCCC-C-CCCceeeccCCCcc--cceeeccccccccCCCCCeEEE
Q 013390 222 QELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTV-P-NVSNACSGFGDSLA--WTFFDLNKIYDEHKDDSATVIQ 297 (444)
Q Consensus 222 ~~ll~~~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~-~-~~~~~~~g~~~~~~--~~~~d~~~~~~~~~~~~~~~~~ 297 (444)
.+|+.++.+ . ..+.++.+.++.++++.|+++.+. + ..+..+........ .+.+. ++..+... ++..++.
T Consensus 282 ~~ll~~~~l--~---~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~-s~~~~~~~-~~~~~l~ 354 (463)
T PRK12416 282 ETLLQSNEL--N---EQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWT-SRKWKHTS-GKQKLLV 354 (463)
T ss_pred HhhcCCcch--h---HHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEee-cCCCCCcC-CCCeEEE
Confidence 999876432 1 346777888999999999977542 1 11111111111110 11122 22112212 3445544
Q ss_pred EEEec-----CCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCC----CCCCCCCCCCEE
Q 013390 298 ADFYH-----ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY----MMRGFTSFPNLF 368 (444)
Q Consensus 298 ~~~~~-----~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~----~p~~~~~~~~l~ 368 (444)
.++.. .+.+.+++++|+.+.++++|+++++... .++.+.+++|.++.|.|.+|+... .+....+.++||
T Consensus 355 ~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~~--~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~ 432 (463)
T PRK12416 355 RMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIKG--EPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIY 432 (463)
T ss_pred EEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCCC--CceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeE
Confidence 44432 2346678999999999999999997443 578889999999999998886432 112223468999
Q ss_pred EeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 369 MAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 369 laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
+||+++.+ .+|++|+.||+++|++|++.+.
T Consensus 433 ~aG~~~~g----~~i~~ai~sg~~aA~~i~~~~~ 462 (463)
T PRK12416 433 LAGASYYG----VGIGACIGNGKNTANEIIATLN 462 (463)
T ss_pred Eecccccc----ccHHHHHHHHHHHHHHHHHHhh
Confidence 99999863 4799999999999999998754
No 9
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.97 E-value=7.4e-29 Score=250.97 Aligned_cols=363 Identities=13% Similarity=0.142 Sum_probs=250.5
Q ss_pred ccccCCChhHHHHHHHhCCCCCCCCc-c-c-ceeccCCccccccccccCCCCCCCccccccccCCCCChhhhhhhhhhHH
Q 013390 2 QGFWYPFRNIFSLVDELGIKPFTGWM-K-S-AQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA 78 (444)
Q Consensus 2 h~~~~~~~~~~~Ll~elGl~~~~~~~-~-~-~~~~~~G~~~~~~~~~~~~~~p~p~~~~~~~~~~~ls~~~kl~~~~l~~ 78 (444)
|.|...++++++|++++|+++...+. . . .++..+|+ +. ++ |.+...++.+..+++.+|++.+. .
T Consensus 60 ~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~------~~---~~--p~~~~~~~~~~~~~~~~~~~~~~--~ 126 (462)
T TIGR00562 60 DSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGK------LM---PV--PTKIAPFVKTGLFSLGGKLRAGM--D 126 (462)
T ss_pred cccccCChHHHHHHHHcCCCcccccCCCCceEEEECCCc------ee---cC--CCChHHHhcCCCCCchhhHHhhh--h
Confidence 78899999999999999998766542 2 2 22323365 21 22 33333455667778888887542 1
Q ss_pred HHhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHH----------Hhc-
Q 013390 79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII----------LAH- 147 (444)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~----------~~~- 147 (444)
.+.. . ....++|+.+|++++ +++++.+++++|++.++|+.+++++|+.++++.+.... ...
T Consensus 127 ~~~~---~----~~~~d~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~ 198 (462)
T TIGR00562 127 FIRP---A----SPGKDESVEEFVRRR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTR 198 (462)
T ss_pred hccC---C----CCCCCcCHHHHHHHh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhc
Confidence 1101 1 123469999999986 78899999999999999999999999998775543210 000
Q ss_pred --C-----------CCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEE
Q 013390 148 --Q-----------KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVV 213 (444)
Q Consensus 148 --~-----------~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI 213 (444)
. .+..+..+.||++ .|++.|++.+. .++|++|++|++|..++ ++++ |.++ |+++.||+||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~gG~~-~l~~~l~~~l~--~~~i~~~~~V~~I~~~~--~~~~-v~~~~g~~~~ad~VI 272 (462)
T TIGR00562 199 NLPQGSGLQLTAKKQGQDFQTLATGLE-TLPEEIEKRLK--LTKVYKGTKVTKLSHRG--SNYT-LELDNGVTVETDSVV 272 (462)
T ss_pred ccCccccccccccccCCceEecchhHH-HHHHHHHHHhc--cCeEEcCCeEEEEEecC--CcEE-EEECCCcEEEcCEEE
Confidence 0 0111345678865 49999998775 27899999999999877 3465 5554 6789999999
Q ss_pred EccChhhHHHhhhccCCCChHHHHHhhcCCCccEEEEEEEeccCCCCCC--CCceeeccCC--CcccceeeccccccccC
Q 013390 214 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN--VSNACSGFGD--SLAWTFFDLNKIYDEHK 289 (444)
Q Consensus 214 ~a~p~~~~~~ll~~~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~--~~~~~~g~~~--~~~~~~~d~~~~~~~~~ 289 (444)
+|+|++++..++++. +....+.+.+++|.++.++.+.|+++.+... .+..+...+. .....++|.+.. +...
T Consensus 273 ~t~P~~~~~~ll~~~---~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~-p~~~ 348 (462)
T TIGR00562 273 VTAPHKAAAGLLSEL---SNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLF-PNRA 348 (462)
T ss_pred ECCCHHHHHHHhccc---CHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEcccc-CCcC
Confidence 999999999998753 1344567889999999999999988755321 1111111111 111124553332 3323
Q ss_pred CCCCeEEEEEEe--cCCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCC----CCCC
Q 013390 290 DDSATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR----GFTS 363 (444)
Q Consensus 290 ~~~~~~~~~~~~--~~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~----~~~~ 363 (444)
+++.+++...+. ....+.+++++++++.++++|.++++... .+.+..+++|+++.|.|.+|+....+. ...+
T Consensus 349 p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~~--~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~ 426 (462)
T TIGR00562 349 PPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKVLNINN--EPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESA 426 (462)
T ss_pred CCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHHhCCCC--CCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhh
Confidence 234445443332 23456678999999999999999997432 478888999999999999997543322 2234
Q ss_pred CCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHh
Q 013390 364 FPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 364 ~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~l 401 (444)
.+||++||||.. + .+||+|+.||+.+|++|++.+
T Consensus 427 ~~~l~l~G~~~~---g-~~i~~~i~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 427 YPGVFLTGNSFE---G-VGIPDCIDQGKAAASDVLTFL 460 (462)
T ss_pred CCCEEEeccccC---C-CcHHHHHHHHHHHHHHHHHhh
Confidence 579999999985 2 489999999999999998875
No 10
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=4.5e-30 Score=248.26 Aligned_cols=396 Identities=23% Similarity=0.302 Sum_probs=294.2
Q ss_pred CccccCCChhHHHHHHHhCCCCCCCCcc-cceec-cCCccccccccccCCCCCCCccccc-cccCCCCChhhhhhhh-hh
Q 013390 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK-SAQYS-EEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSL-PL 76 (444)
Q Consensus 1 ~h~~~~~~~~~~~Ll~elGl~~~~~~~~-~~~~~-~~G~~~~~~~~~~~~~~p~p~~~~~-~~~~~~ls~~~kl~~~-~l 76 (444)
.|+||++|+|++.||+|++.++.+++.. ...+. -.++.-...+|.. +..|.|+.... +++.+.+++++|++++ ++
T Consensus 54 lh~f~~~Y~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~p~p~~~~~~~l~~~~~~~~~~~~~~~~l 132 (485)
T COG3349 54 LHVFFGCYYNLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFAR-PDAPQPTNGLKAFLRLPQLPRREKIRFVLRL 132 (485)
T ss_pred eEEechhHHHHHHHhhhCCchheeehHhhhhhhcccCCCCCccccccc-CCCCCcchhhhhhhhccccCHHHHhHHhhcc
Confidence 4999999999999999999998877764 55552 1222112222432 34566777665 6788899999999954 43
Q ss_pred HHHHhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCCCcceeee
Q 013390 77 MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWC 156 (444)
Q Consensus 77 ~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~ 156 (444)
..... ...+.++++|++|+.|||++++.++...+..|.|+.....+.+++.+|+..++.++..+++.+.++.....+
T Consensus 133 ~~~~~---g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~ 209 (485)
T COG3349 133 GDAPI---GADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNL 209 (485)
T ss_pred ccccc---hhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhh
Confidence 22111 024668899999999999999999999999999999999999999999999998888776555455556677
Q ss_pred cCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCC--CeEEEEEeCCe---EEecCEEEEccChhhHHHhhhccCCC
Q 013390 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEER--CCISDVVCGKE---TYSAGAVVLAVGISTLQELIKNSILC 231 (444)
Q Consensus 157 ~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~--g~v~~v~~~g~---~~~ad~VI~a~p~~~~~~ll~~~~l~ 231 (444)
+|+..+.+..++.+.+++.|.++++..+|++|..+..+ .+++++.+.+. ...++.|+.+...+....+++... +
T Consensus 210 ~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~~~ps~W-~ 288 (485)
T COG3349 210 RGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDLPSEW-P 288 (485)
T ss_pred cCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhhcCcccc-c
Confidence 88888999999999999999999999999999987632 34666666543 345677777777777777777753 2
Q ss_pred ChHHHHHhhcCCCccEEEEEEEeccCCCCCCCCceeeccC------CCcccceeeccccccccCCCC-CeEEEEEEecCC
Q 013390 232 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG------DSLAWTFFDLNKIYDEHKDDS-ATVIQADFYHAN 304 (444)
Q Consensus 232 ~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~------~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~ 304 (444)
+..+++.+..++..++.+++++++...+.....+..++.+ .+....++|+...++.+..++ +..+..+..+..
T Consensus 289 ~~~~f~~ly~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~ 368 (485)
T COG3349 289 KWSNFDGLYGLRLVPVITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGW 368 (485)
T ss_pred ccccccccccccccceeEEEEeecCccccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhcccc
Confidence 3555678888888999999999996544222211111111 122333455544333332211 223333334667
Q ss_pred CCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCCCCCCCEEEeecccccCCCcchhh
Q 013390 305 ELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQE 384 (444)
Q Consensus 305 ~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~~~~~~l~laGd~~~~~~~~~~~e 384 (444)
.|...+++++.....+++...+|....+. ....+.+.++++....||+..+||...+|++|++++|||+...+- ++||
T Consensus 369 ~~~~~~~~~~~a~~e~~~~~~vP~~~~a~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~~-~smE 446 (485)
T COG3349 369 PFLFESDEAIVATFEKELYELVPSLAEAK-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYL-GSME 446 (485)
T ss_pred cccccchhhHHHHHHHHhhhcCCchhccc-ccccceeccccccccCCCccccCCCCCCCccchhhccceeecCCc-Cccc
Confidence 77888999999999999999998876544 566677789999999999999999999999999999999986554 7999
Q ss_pred HHHHHHHHHHHHHHHHhCC
Q 013390 385 RSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 385 gAv~SG~~aA~~il~~lg~ 403 (444)
+|..||++||+.|++.++.
T Consensus 447 ~A~~sGl~AA~~v~~~~~~ 465 (485)
T COG3349 447 GATLSGLLAANAILDNLGH 465 (485)
T ss_pred hhhhhHHHHHHHHHHhhhh
Confidence 9999999999999988874
No 11
>PRK07208 hypothetical protein; Provisional
Probab=99.97 E-value=4.7e-28 Score=246.04 Aligned_cols=382 Identities=16% Similarity=0.131 Sum_probs=252.0
Q ss_pred CccccCCChhHHHHHHHhCCCCCCCCc-c-cceeccCCccccccccccCCCCCCCccccccccCCCCChhhhhhhhh-hH
Q 013390 1 MQGFWYPFRNIFSLVDELGIKPFTGWM-K-SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLP-LM 77 (444)
Q Consensus 1 ~h~~~~~~~~~~~Ll~elGl~~~~~~~-~-~~~~~~~G~~~~~~~~~~~~~~p~p~~~~~~~~~~~ls~~~kl~~~~-l~ 77 (444)
.|.|+..++++++|++|+|.+...... . ..++ .+|+. . ++ |++....+ ..+++.++++.+. ++
T Consensus 57 ~h~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~g~~------~---~~--p~~~~~~l--~~~~~~~~~~~~~~~~ 122 (479)
T PRK07208 57 GHRFFSKSPEVMDLWNEILPDDDFLLRPRLSRIY-YRGKF------F---DY--PLKAFDAL--KNLGLWRTAKCGASYL 122 (479)
T ss_pred CceeccCCHHHHHHHHHhcCCCccccccccceEE-ECCEE------e---cC--CcchhHHH--HhCCHhHHHHHHHHHH
Confidence 388999999999999999974433222 2 2333 35642 1 12 33322222 2356666655432 11
Q ss_pred HHHhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHH---------HHHHHhc-
Q 013390 78 AAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGIL---------YFIILAH- 147 (444)
Q Consensus 78 ~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l---------~~~~~~~- 147 (444)
.. +. .. ..+++|+++|++++ +++++.+.++.|++.++|+.+++++|+.+++..+ +..+...
T Consensus 123 ~~--~~--~~----~~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (479)
T PRK07208 123 KA--RL--RP----RKEEDSFEDWVINR-FGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSL 193 (479)
T ss_pred HH--hc--CC----CCCCCCHHHHHHHh-hCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcc
Confidence 11 11 01 13689999999985 7889999999999999999999999998755322 2111010
Q ss_pred --------C-C--CcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC---Ce--EEecCE
Q 013390 148 --------Q-K--NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGA 211 (444)
Q Consensus 148 --------~-~--~~~~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~---g~--~~~ad~ 211 (444)
. . ...+.+|+||++. |+++|++.+++.|++|++|++|++|..+++ +.++.+..+ |+ ++.||+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~p~gG~~~-l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~-~~v~~~~~~~~~g~~~~~~ad~ 271 (479)
T PRK07208 194 GLKRRNKEVETSLIEEFRYPKLGPGQ-LWETAAEKLEALGGKVVLNAKVVGLHHDGD-GRIAVVVVNDTDGTEETVTADQ 271 (479)
T ss_pred cccccCCCccccceeEEeCCCCCcch-HHHHHHHHHHHcCCEEEeCCEEEEEEEcCC-cEEEEEEEEcCCCCEEEEEcCE
Confidence 0 0 1245678999765 999999999999999999999999999874 434444432 42 589999
Q ss_pred EEEccChhhHHHhhhccCCCChHHHHHhhcCCCccEEEEEEEeccCCCCCCCCceeeccCCCcc-cceeeccccccccCC
Q 013390 212 VVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLA-WTFFDLNKIYDEHKD 290 (444)
Q Consensus 212 VI~a~p~~~~~~ll~~~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~~~~-~~~~d~~~~~~~~~~ 290 (444)
||+|+|++.+.+++.++ ++ ....+.++.+.+.++++++++++++...+..+..+.+...... ...+ +...+...+
T Consensus 272 VI~a~p~~~l~~~l~~~-~~-~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~p 347 (479)
T PRK07208 272 VISSMPLRELVAALDPP-PP-PEVRAAAAGLRYRDFITVGLLVKELNLFPDNWIYIHDPDVKVGRLQNF--NNWSPYLVP 347 (479)
T ss_pred EEECCCHHHHHHhcCCC-CC-HHHHHHHhCCCcceeEEEEEEecCCCCCCCceEEecCCCCccceeccc--ccCCcccCC
Confidence 99999999998887643 32 3344566788888899999999987543332211111110000 0011 111121122
Q ss_pred CCC-eEEEEEEe--cCCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCC---CCCCC
Q 013390 291 DSA-TVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR---GFTSF 364 (444)
Q Consensus 291 ~~~-~~~~~~~~--~~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~---~~~~~ 364 (444)
++. ..+.+.++ ..+....++++|++++++++|.++.+ .....++..++.+|+++.|.|.+|+....+. ..++.
T Consensus 348 ~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~ 426 (479)
T PRK07208 348 DGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELARLGL-IRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHF 426 (479)
T ss_pred CCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHHHcCC-CChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhc
Confidence 222 33333332 33455578999999999999999744 3234688999999999999999887643222 22567
Q ss_pred CCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCCCCccccccCCCCCh
Q 013390 365 PNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEP 417 (444)
Q Consensus 365 ~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~~~~~~~~~~~~~~~ 417 (444)
+|||+||++....| .+||+|+.||..+|+.|++.- ..+.+||++.|-.
T Consensus 427 ~~l~laGr~~~~~~--~~~d~a~~sg~~~a~~i~~~~---~~~~~~~~~~~~~ 474 (479)
T PRK07208 427 PNLHLVGRNGMHRY--NNQDHSMLTAMLAVENIIAGE---TKHDIWQVNTEAE 474 (479)
T ss_pred CCceeecccccccc--CChhHHHHHHHHHHHHHhcCC---ccCCceEeccccc
Confidence 89999998764344 489999999999999888763 3356999877653
No 12
>PLN02576 protoporphyrinogen oxidase
Probab=99.97 E-value=3.6e-28 Score=247.94 Aligned_cols=367 Identities=14% Similarity=0.177 Sum_probs=248.2
Q ss_pred ccccCCChhHHHHHHHhCCCCCCCCcc--c-ceeccCCccccccccccCCCCCCCccccccccCCCCChhhhhhhhhhHH
Q 013390 2 QGFWYPFRNIFSLVDELGIKPFTGWMK--S-AQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA 78 (444)
Q Consensus 2 h~~~~~~~~~~~Ll~elGl~~~~~~~~--~-~~~~~~G~~~~~~~~~~~~~~p~p~~~~~~~~~~~ls~~~kl~~~~l~~ 78 (444)
|.|...++.+..|+++ |+.+...+.. . .+...+|+. . ++ |.+...++.++.+++.+|++++....
T Consensus 67 ~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~~~~~~~~g~~------~---~~--p~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (496)
T PLN02576 67 NSFQPSDPELTSAVDS-GLRDDLVFPDPQAPRYVVWNGKL------R---PL--PSNPIDLPTFDLLSAPGKIRAGLGAF 134 (496)
T ss_pred chhccCcHHHHHHHHc-CChhheecCCCCceEEEEECCEE------E---Ec--CCChHHhcCcCcCChhHHHHHhHHHh
Confidence 7888899999999988 9987655432 2 122246652 2 12 33333345677789999998653221
Q ss_pred HHhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHH--------------
Q 013390 79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII-------------- 144 (444)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~-------------- 144 (444)
.+.+. .. ..+++|+++|++++ ++++++++|++|++.++|+.+++++|+..+++.+....
T Consensus 135 ~~~~~---~~---~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~ 207 (496)
T PLN02576 135 GWKRP---PP---PGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAI 207 (496)
T ss_pred hccCC---CC---CCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhh
Confidence 11111 11 25789999999986 89999999999999999999999999998876654320
Q ss_pred Hhc---------------CCCcceeeecCCcchhhHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEe---CC-
Q 013390 145 LAH---------------QKNFDLVWCRGTLREKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---GK- 204 (444)
Q Consensus 145 ~~~---------------~~~~~~~~~~gg~~~~l~~~l~~~l~~~G-~~v~~~~~V~~I~~~~~~g~v~~v~~---~g- 204 (444)
... ..+.....++|||+ .|+++|++.+ + ++|++|++|++|+.+++ +++. |.+ +|
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~-~L~~~la~~l---~~~~i~l~~~V~~I~~~~~-~~~~-v~~~~~~g~ 281 (496)
T PLN02576 208 QEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQ-TLPDALAKRL---GKDKVKLNWKVLSLSKNDD-GGYS-LTYDTPEGK 281 (496)
T ss_pred hhhcccccccccccccccccCCeeEeccchHH-HHHHHHHHhh---CcCcEEcCCEEEEEEECCC-CcEE-EEEecCCCc
Confidence 000 01122345688976 5999998765 4 68999999999998874 3243 333 24
Q ss_pred eEEecCEEEEccChhhHHHhhhccCCCChHHHHHhhcCCCccEEEEEEEeccCCCCCC-----CCceeecc----CCC--
Q 013390 205 ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN-----VSNACSGF----GDS-- 273 (444)
Q Consensus 205 ~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~-----~~~~~~g~----~~~-- 273 (444)
+++.||+||+|+|++++..++.+.. +...+.+.++.|.++.+++++|+++++... +.. .++. ..+
T Consensus 282 ~~~~ad~VI~a~P~~~l~~ll~~~~---~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~-~~g~l~~~~~~~~ 357 (496)
T PLN02576 282 VNVTAKAVVMTAPLYVVSEMLRPKS---PAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLE-GFGQLHPRKQGVK 357 (496)
T ss_pred eeEEeCEEEECCCHHHHHHHhcccC---HHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCC-ceEEEccCCCCCc
Confidence 4689999999999999999987631 344567888999999999999998766321 111 1111 011
Q ss_pred cccceeeccccccccCCCCCeEEEEEEec---CCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccC
Q 013390 274 LAWTFFDLNKIYDEHKDDSATVIQADFYH---ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFF 350 (444)
Q Consensus 274 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~ 350 (444)
....+++ +...+...+++..++. .|.. .+.+..++++++++.++++|.++++......+....+++|+++.|.|.
T Consensus 358 ~lg~~~~-s~~~p~~~~~~~~~l~-~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~ 435 (496)
T PLN02576 358 TLGTIYS-SSLFPDRAPEGRVLLL-NYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYL 435 (496)
T ss_pred eEEEEee-cCcCCCCCCCCCEEEE-EEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCC
Confidence 1111333 2222322222333333 3332 356777899999999999999999743211345566889999999999
Q ss_pred CCCCCCCCCCC---CCC--CCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 351 PGSYKYMMRGF---TSF--PNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 351 pg~~~~~p~~~---~~~--~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
+|+....+..+ ... +|||+||||+.. .++++|+.||.++|++|+..+..
T Consensus 436 ~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g----~~i~~ai~sg~~aA~~i~~~~~~ 489 (496)
T PLN02576 436 LGHLDVLEAAEKMEKDLGLPGLFLGGNYRGG----VALGKCVESGYEAADLVISYLES 489 (496)
T ss_pred cCHHHHHHHHHHHHHhcCCCCEEEeccccCC----ccHHHHHHHHHHHHHHHHHHHhh
Confidence 99864332222 123 799999999972 47999999999999999988753
No 13
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.96 E-value=7.7e-28 Score=242.93 Aligned_cols=364 Identities=16% Similarity=0.159 Sum_probs=241.3
Q ss_pred ccccCCChhHHHHHHHhCCCCCCCCc--ccceeccCCccccccccccCCC---CCCCccccccccCCCCChhhhhhhhhh
Q 013390 2 QGFWYPFRNIFSLVDELGIKPFTGWM--KSAQYSEEGLEVEFPIFQDLNQ---LPTPLGTLFYTQFSRLPLVDRLTSLPL 76 (444)
Q Consensus 2 h~~~~~~~~~~~Ll~elGl~~~~~~~--~~~~~~~~G~~~~~~~~~~~~~---~p~p~~~~~~~~~~~ls~~~kl~~~~l 76 (444)
|.|++.++++++|+++||++...... ...++..+|+.+. +|. ...|.....++..+.++..++++.+..
T Consensus 56 ~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~g~~~~------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (451)
T PRK11883 56 ESFLARKPSAPALVKELGLEDELVANTTGQSYIYVNGKLHP------IPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAAD 129 (451)
T ss_pred HHhcCCcHHHHHHHHHcCCccceecCCCCcceEEECCeEEE------CCCCCeeccCCCchhhhcCCCCCHHHHHHhhCc
Confidence 67889999999999999998654432 2222224565221 110 011222222233466777777764321
Q ss_pred HHHHhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHH----------h
Q 013390 77 MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL----------A 146 (444)
Q Consensus 77 ~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~----------~ 146 (444)
. .. ..+...+++|+.+|+++. +++++++.++.|++.++|+.+++++|+..++..+..+.. .
T Consensus 130 ~---~~-----~~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 200 (451)
T PRK11883 130 L---RP-----PRWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRK 200 (451)
T ss_pred c---cC-----CCCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHh
Confidence 1 00 112236789999999985 888999999999999999999999999876654432210 0
Q ss_pred ----c--CCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 013390 147 ----H--QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (444)
Q Consensus 147 ----~--~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (444)
. ..+....+++||++. +++.+++.+... +|++|++|++|..++ +++. |.+ +|+++.||+||+|+|++
T Consensus 201 ~~~~~~~~~~~~~~~~~~G~~~-l~~~l~~~l~~~--~i~~~~~V~~i~~~~--~~~~-v~~~~g~~~~~d~vI~a~p~~ 274 (451)
T PRK11883 201 ALPKEKKKTKGVFGTLKGGLQS-LIEALEEKLPAG--TIHKGTPVTKIDKSG--DGYE-IVLSNGGEIEADAVIVAVPHP 274 (451)
T ss_pred hccccCCCCCCceEeeccHHHH-HHHHHHHhCcCC--eEEeCCEEEEEEEcC--CeEE-EEECCCCEEEcCEEEECCCHH
Confidence 0 012234467899654 999998876532 899999999999887 4465 554 57889999999999999
Q ss_pred hHHHhhhccCCCChHHHHHhhcCCCccEEEEEEEeccCCC-CCCCCceeeccCCC--cccceeeccccccccCCCCCeEE
Q 013390 220 TLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVT-VPNVSNACSGFGDS--LAWTFFDLNKIYDEHKDDSATVI 296 (444)
Q Consensus 220 ~~~~ll~~~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~-~~~~~~~~~g~~~~--~~~~~~d~~~~~~~~~~~~~~~~ 296 (444)
++.+++..+ +..+.++++++.++.++++.|++++. .+..+..++..+.. .....++.. ..+...+++..++
T Consensus 275 ~~~~l~~~~-----~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~p~g~~~~ 348 (451)
T PRK11883 275 VLPSLFVAP-----PAFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSK-KWPHTTPEGKVLL 348 (451)
T ss_pred HHHHhccCh-----hHHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcC-cCCCCCCCCcEEE
Confidence 999986642 23356788899999999999998852 12212222221211 122224322 2222222234444
Q ss_pred EEEEe-c-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCC----CCCCCCCCCCEEEe
Q 013390 297 QADFY-H-ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY----MMRGFTSFPNLFMA 370 (444)
Q Consensus 297 ~~~~~-~-~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~----~p~~~~~~~~l~la 370 (444)
...+. . .......+++++++.++++|+++++... .+.+..+.+|.++.|.+.||+... ++.... ++|||+|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~--~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~a 425 (451)
T PRK11883 349 RLYVGRPGDEAVVDATDEELVAFVLADLSKVMGITG--DPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVA 425 (451)
T ss_pred EEecCCCCCchhccCCHHHHHHHHHHHHHHHhCCCC--CceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEE
Confidence 33322 1 2234567899999999999999986432 466888999999999999887432 222222 6799999
Q ss_pred ecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 371 GDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 371 Gd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
|+|+. + .++++|+.||+++|++|++
T Consensus 426 G~~~~---g-~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 426 GASFE---G-VGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred CcccC---C-ccHHHHHHHHHHHHHHHHh
Confidence 99985 3 5799999999999999975
No 14
>PLN02268 probable polyamine oxidase
Probab=99.93 E-value=5.5e-24 Score=213.60 Aligned_cols=281 Identities=16% Similarity=0.091 Sum_probs=188.7
Q ss_pred hccCccHHHHHHHhC----------CCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCCCcceeeecCCcc
Q 013390 92 KYDSITARELFKQFG----------CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLR 161 (444)
Q Consensus 92 ~~d~~s~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gg~~ 161 (444)
..+++|+.+|+++.. +.+++.+.++.| +.+.++.+++++|+..+.. ...+ .++ ..++.+|+.
T Consensus 130 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~--~~~~---~g~--~~~~~~G~~ 201 (435)
T PLN02268 130 HEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ--EELL---EGG--HGLMVRGYD 201 (435)
T ss_pred cCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC--cccc---CCC--ceeecCCHH
Confidence 368899999876531 344445555566 4567889999999864311 0000 111 134567854
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhHHHh--hhccCCCChHHHHH
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQEL--IKNSILCNREEFLK 238 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~~~l--l~~~~l~~~~~~~~ 238 (444)
.+++.|++ +.+|++|++|++|..+++ +|+ |++. |+++.||+||+|+|+.+++++ ...+.+| ....+.
T Consensus 202 -~l~~~l~~-----~~~i~~~~~V~~i~~~~~--~v~-v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp-~~~~~a 271 (435)
T PLN02268 202 -PVINTLAK-----GLDIRLNHRVTKIVRRYN--GVK-VTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELP-EWKEEA 271 (435)
T ss_pred -HHHHHHhc-----cCceeCCCeeEEEEEcCC--cEE-EEECCCcEEEcCEEEEecCHHHHhcCcceecCCCC-HHHHHH
Confidence 47777753 568999999999998874 465 5554 778999999999999999753 2334442 233467
Q ss_pred hhcCCCccEEEEEEEeccCCCCCCCCceeeccCCC--cccceeeccccccccCCCCCeEEEEEEec--CCCCCCCCHHHH
Q 013390 239 VLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS--LAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQV 314 (444)
Q Consensus 239 l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ee~ 314 (444)
++++.+.++.++.+.|++++|.... ++|...+ .....++.. .. . ++..++.+...+ +..+..++++++
T Consensus 272 i~~~~~g~~~Kv~l~f~~~fw~~~~---~~g~~~~~~~~~~~~~~~--~~--~-~g~~~l~~~~~g~~a~~~~~~~~~e~ 343 (435)
T PLN02268 272 ISDLGVGIENKIALHFDSVFWPNVE---FLGVVAPTSYGCSYFLNL--HK--A-TGHPVLVYMPAGRLARDIEKLSDEAA 343 (435)
T ss_pred HHhCCccceeEEEEEeCCCCCCCCc---eeeccCCCCCCceEEEec--cc--C-CCCCEEEEEeccHHHHHHHhCCHHHH
Confidence 7888999999999999999884322 3332111 111122211 11 1 233344332222 345677899999
Q ss_pred HHHHHHHHHhhccCCCCCeeeeEEEEEeCCCcc------ccCCCCC-CCCCCCCCCCCCEEEeecccccCCCcchhhHHH
Q 013390 315 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLT------HFFPGSY-KYMMRGFTSFPNLFMAGDWITTRHGSWSQERSY 387 (444)
Q Consensus 315 ~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~------~~~pg~~-~~~p~~~~~~~~l~laGd~~~~~~~~~~~egAv 387 (444)
++.++++|.++||... .++...+++|....+ .+.||.. ...+..++|+++|||||++++..|+ ++||||+
T Consensus 344 ~~~v~~~L~~~~~~~~--~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~-g~~eGA~ 420 (435)
T PLN02268 344 ANFAMSQLKKMLPDAT--EPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFP-GSVHGAY 420 (435)
T ss_pred HHHHHHHHHHHcCCCC--CccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCccc-ccHHHHH
Confidence 9999999999998653 477888889965431 2245542 2233455788999999999998888 8999999
Q ss_pred HHHHHHHHHHHHHh
Q 013390 388 VTGLEAANRVVDYL 401 (444)
Q Consensus 388 ~SG~~aA~~il~~l 401 (444)
.||++||++|++.|
T Consensus 421 ~sG~raA~~v~~~l 434 (435)
T PLN02268 421 STGVMAAEECRMRL 434 (435)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 15
>PLN02529 lysine-specific histone demethylase 1
Probab=99.91 E-value=2.3e-22 Score=208.11 Aligned_cols=290 Identities=14% Similarity=0.133 Sum_probs=184.0
Q ss_pred hccCccHHHHHHHhC------CCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCCCcceeeecCCcchhhH
Q 013390 92 KYDSITARELFKQFG------CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIF 165 (444)
Q Consensus 92 ~~d~~s~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~ 165 (444)
..+++|+.+|+++.. .++. -+.++...+....+..+.++|...+....... ....+.+...+.||++ .|+
T Consensus 285 ~~~d~Sl~~~le~~~~~~~~~~t~~-e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~--~~e~~G~~~~i~GG~~-~Li 360 (738)
T PLN02529 285 FANDISLGSVLERLRQLYGVARSTE-ERQLLDWHLANLEYANAGCLSDLSAAYWDQDD--PYEMGGDHCFLAGGNW-RLI 360 (738)
T ss_pred CccCCCHHHHHHHHHhhhccCCCHH-HHHHHHHHHHHhceecCCChHHhhhhHhhhcc--ccccCCceEEECCcHH-HHH
Confidence 367899999998643 3443 23455444433333333333332222222110 0111223345678965 588
Q ss_pred HHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHH--hhhccCCCChHHHHHhhcCC
Q 013390 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSILCNREEFLKVLNLA 243 (444)
Q Consensus 166 ~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~--ll~~~~l~~~~~~~~l~~l~ 243 (444)
++|++ +..|++|++|++|.++++ +|+ |.++++++.||+||+|+|+.++++ +...|++| ....+.++++.
T Consensus 361 ~aLA~-----~L~IrLnt~V~~I~~~~d--GVt-V~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP-~~K~~AI~rL~ 431 (738)
T PLN02529 361 NALCE-----GVPIFYGKTVDTIKYGND--GVE-VIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELP-RRKLAAIDRLG 431 (738)
T ss_pred HHHHh-----cCCEEcCCceeEEEEcCC--eEE-EEECCEEEEcCEEEECCCHHHHHhccccCCCCCC-HHHHHHHHcCC
Confidence 88875 346999999999999874 476 667777899999999999999984 44455553 34457889999
Q ss_pred CccEEEEEEEeccCCCCCCCCceeeccC------CCcccceeeccccccccCCCCCeEEEEEEe--cCCCCCCCCHHHHH
Q 013390 244 SIDVVSVKLWFDKKVTVPNVSNACSGFG------DSLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVV 315 (444)
Q Consensus 244 ~~~~~~v~l~~d~~~~~~~~~~~~~g~~------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ee~~ 315 (444)
+.++.++++.|++++|.... . .+|.. .+..+.+++... . +++.++.+... .+..+..+++++++
T Consensus 432 yG~v~KV~L~F~~~FW~~~~-~-~fG~l~~~~~~~g~~~~~~~~~~-----~-~ggpvLvafv~G~~A~~le~lsdeeii 503 (738)
T PLN02529 432 FGLLNKVAMVFPSVFWGEEL-D-TFGCLNESSNKRGEFFLFYGYHT-----V-SGGPALVALVAGEAAQRFENTDPSTLL 503 (738)
T ss_pred CceeEEEEEEeCCccccCCC-C-ceEEEeccCCCCceEEEEecCCC-----C-CCCCEEEEEECchhhHHHhcCCHHHHH
Confidence 99999999999999985321 1 22211 111111222111 1 13334433322 23456778999999
Q ss_pred HHHHHHHHhhccC--CCCCeeeeEEEEEeCCCcccc------CCCCCC-CCCCCCCC-CCCEEEeecccccCCCcchhhH
Q 013390 316 AKAVSYLSKCIKD--FSTATVMDHKIRRFPKSLTHF------FPGSYK-YMMRGFTS-FPNLFMAGDWITTRHGSWSQER 385 (444)
Q Consensus 316 ~~~l~~l~~~~p~--~~~~~~~~~~v~r~~~~~~~~------~pg~~~-~~p~~~~~-~~~l~laGd~~~~~~~~~~~eg 385 (444)
+.+++.|.++|+. .....++...+++|..+.+.. .||... .......| .++|||||++|+..|+ ++|||
T Consensus 504 ~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~p-gtVeG 582 (738)
T PLN02529 504 HRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYP-ATMHG 582 (738)
T ss_pred HHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCC-eEeHH
Confidence 9999999999962 221256778888897543222 122211 01112234 4789999999998899 89999
Q ss_pred HHHHHHHHHHHHHHHhCC
Q 013390 386 SYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 386 Av~SG~~aA~~il~~lg~ 403 (444)
|+.||.+||++|++.+++
T Consensus 583 Ai~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 583 AFLSGLREASRILHVARS 600 (738)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999998864
No 16
>PLN03000 amine oxidase
Probab=99.90 E-value=3.8e-22 Score=206.99 Aligned_cols=231 Identities=15% Similarity=0.163 Sum_probs=162.9
Q ss_pred eeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHH--HhhhccCCC
Q 013390 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ--ELIKNSILC 231 (444)
Q Consensus 154 ~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~--~ll~~~~l~ 231 (444)
....||++ .|+++|++.+ .|++|++|++|.+++ ++|+ |++++++++||+||+|+|+.+++ .+...|++|
T Consensus 374 ~~v~GG~~-~LieaLa~~L-----~I~Ln~~Vt~I~~~~--dgV~-V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpLP 444 (881)
T PLN03000 374 CFLPGGNG-RLVQALAENV-----PILYEKTVQTIRYGS--NGVK-VIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELP 444 (881)
T ss_pred EEeCCCHH-HHHHHHHhhC-----CcccCCcEEEEEECC--CeEE-EEECCcEEEeceEEEcCCHHHHhhCceeeCCCCC
Confidence 44679965 5999998755 499999999999987 4475 66766789999999999999998 555566563
Q ss_pred ChHHHHHhhcCCCccEEEEEEEeccCCCCCCCCceeeccC------CCcccceeeccccccccCCCCCeEEEEEEe--cC
Q 013390 232 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG------DSLAWTFFDLNKIYDEHKDDSATVIQADFY--HA 303 (444)
Q Consensus 232 ~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~ 303 (444)
....+.++++.+..+.+|++.|++++|.... ..+|.. .+..+.+++.+ + ..++.++.+... .+
T Consensus 445 -~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~--~~FG~l~~~~~~rg~~~~f~s~s---p---~~G~pVLvafv~Gd~A 515 (881)
T PLN03000 445 -QRKLDCIKRLGFGLLNKVAMLFPYVFWSTDL--DTFGHLTEDPNYRGEFFLFYSYA---P---VAGGPLLIALVAGEAA 515 (881)
T ss_pred -HHHHHHHHcCCCcceEEEEEEeCCccccCCC--CceeEEecCCCCCceeEEEeCCC---C---CCCCcEEEEEecCchh
Confidence 3344788999999999999999999995431 123221 11122223222 1 023344443333 23
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhccC--CCCCeeeeEEEEEeCCCccc------cCCCCCC-CCCCCCCCC--CCEEEeec
Q 013390 304 NELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPKSLTH------FFPGSYK-YMMRGFTSF--PNLFMAGD 372 (444)
Q Consensus 304 ~~~~~~~~ee~~~~~l~~l~~~~p~--~~~~~~~~~~v~r~~~~~~~------~~pg~~~-~~p~~~~~~--~~l~laGd 372 (444)
..+..++++++++.++++|.++|+. .....++.+.+++|...-+. +.||... .......|+ ++|||||+
T Consensus 516 ~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGE 595 (881)
T PLN03000 516 HKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGE 595 (881)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeeh
Confidence 4577899999999999999999962 22125678888899655322 2344332 122233454 58999999
Q ss_pred ccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 373 WITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 373 ~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
+|+..|+ ++|+||+.||.+||++|++.++.
T Consensus 596 aTs~~~~-GTVhGAieSGlRAA~eIl~~l~~ 625 (881)
T PLN03000 596 ATTRRYP-ATMHGAFVTGLREAANMAQSAKA 625 (881)
T ss_pred HHhCCCC-eeHHHHHHHHHHHHHHHHHHhhh
Confidence 9998899 89999999999999999999864
No 17
>PLN02676 polyamine oxidase
Probab=99.89 E-value=4.2e-22 Score=200.86 Aligned_cols=293 Identities=12% Similarity=0.097 Sum_probs=188.9
Q ss_pred hccCccH--HHHHHHhC-CCHHHHHHHHHHHHH-hhcCCChhhchHHHHHHHHHHHHHhcCCCcceeee-cCCcchhhHH
Q 013390 92 KYDSITA--RELFKQFG-CSERLYRNVIGPLVQ-VGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWC-RGTLREKIFE 166 (444)
Q Consensus 92 ~~d~~s~--~~~l~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~-~gg~~~~l~~ 166 (444)
..++.|+ .+++.+.. .... ......+.. ..++.+++++|+..++.. ..+ ...++....+. +||++ .|++
T Consensus 155 ~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~S~~~~~~~-~~~--~~~g~~~~~~~~~~G~~-~l~~ 228 (487)
T PLN02676 155 KAVDISILTAQRLFGQVPKTPL--EMVIDYYNYDYEFAEPPRVTSLKNTEPN-PTF--VDFGEDEYFVADPRGYE-SLVY 228 (487)
T ss_pred CCCCccHHHHHHHHhhCCCCHH--HHHHHHHhccceeccCccccchhhcCcc-ccc--ccCCCceEEeecCCCHH-HHHH
Confidence 3577887 55666542 1211 112222221 226788899998665321 111 11112222222 57854 5999
Q ss_pred HHHHHHHhc------CcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhHHH--hhhccCCCChHHHH
Q 013390 167 PWMDSMRTR------GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQE--LIKNSILCNREEFL 237 (444)
Q Consensus 167 ~l~~~l~~~------G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~~~--ll~~~~l~~~~~~~ 237 (444)
.|++.+.+. +.+|++|++|++|..+++ +|+ |.+. |++++||+||+|+|+.++++ +...|++| ....+
T Consensus 229 ~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~--gV~-V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP-~~k~~ 304 (487)
T PLN02676 229 YLAEQFLSTKSGKITDPRLKLNKVVREISYSKN--GVT-VKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLP-DWKIE 304 (487)
T ss_pred HHHhhcccccccccCCCceecCCEeeEEEEcCC--cEE-EEECCCCEEEeCEEEEccChHHhccCceEEeCCCC-HHHHH
Confidence 999876432 357999999999999874 476 6665 77899999999999999986 66666664 33346
Q ss_pred HhhcCCCccEEEEEEEeccCCCCCCCCceeeccCC---C--cccceeeccccccccCCCCCeEEEEEEec--CCCCCCCC
Q 013390 238 KVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD---S--LAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLK 310 (444)
Q Consensus 238 ~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~---~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 310 (444)
.++++.+..+.++.+.|++++|.+......+.... + ..|..++. .. ++..++.+.+.+ +..+..++
T Consensus 305 ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~l~~~~~g~~a~~~~~~s 377 (487)
T PLN02676 305 AIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLEN-----EY--PGSNVLFVTVTDEESRRIEQQP 377 (487)
T ss_pred HHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhhccc-----CC--CCCCEEEEEechHHHHHHHhCC
Confidence 78889999999999999999995421111111100 0 11111111 11 223344333332 34566789
Q ss_pred HHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCc------cccCCCCCC-CCCCCCCCCCCEEEeecccccCCCcchh
Q 013390 311 DDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSL------THFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQ 383 (444)
Q Consensus 311 ~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~------~~~~pg~~~-~~p~~~~~~~~l~laGd~~~~~~~~~~~ 383 (444)
++++.+.+++.|.++|+... ..++...+++|.... ..+.||... ..+..+.|+++|||||++++..|+ ++|
T Consensus 378 ~e~~~~~vl~~L~~~~g~~~-~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~-g~~ 455 (487)
T PLN02676 378 DSETKAEIMEVLRKMFGPNI-PEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYN-GYV 455 (487)
T ss_pred HHHHHHHHHHHHHHHhCCCC-CCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccc-cch
Confidence 99999999999999997422 246777777885442 223455442 233445788999999999998888 899
Q ss_pred hHHHHHHHHHHHHHHHHhCC
Q 013390 384 ERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 384 egAv~SG~~aA~~il~~lg~ 403 (444)
|||+.||++||++|++.++.
T Consensus 456 eGA~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 456 HGAYLAGIDTANDLLECIKK 475 (487)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999875
No 18
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.88 E-value=1.3e-20 Score=195.84 Aligned_cols=232 Identities=13% Similarity=0.144 Sum_probs=160.2
Q ss_pred eeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHH--hhhccCC
Q 013390 153 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSIL 230 (444)
Q Consensus 153 ~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~--ll~~~~l 230 (444)
.....||++ .|+++|++.+ .|++|++|++|.+.++ +|. |.++|+++.||+||+|+|+.++++ +...+++
T Consensus 429 ~~~v~GG~~-~Li~aLa~~L-----~I~ln~~V~~I~~~~d--gV~-V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~L 499 (808)
T PLN02328 429 HCFIPGGND-TFVRELAKDL-----PIFYERTVESIRYGVD--GVI-VYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPEL 499 (808)
T ss_pred EEEECCcHH-HHHHHHHhhC-----CcccCCeeEEEEEcCC--eEE-EEeCCeEEEcCEEEECCCHHHHhhcccccCCCC
Confidence 345679965 5999998755 3999999999999874 464 556788999999999999999984 4444445
Q ss_pred CChHHHHHhhcCCCccEEEEEEEeccCCCCCCCCceeecc---CC---CcccceeeccccccccCCCCCeEEEEEEec--
Q 013390 231 CNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGF---GD---SLAWTFFDLNKIYDEHKDDSATVIQADFYH-- 302 (444)
Q Consensus 231 ~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~---~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-- 302 (444)
| ....+.++++.|..+.+|.+.|++++|.... . .+|. +. +....+++.+. . .++.++.....+
T Consensus 500 P-~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~-d-~fG~l~~d~s~rG~~~lf~s~s~-----~-~G~~vLvafv~G~~ 570 (808)
T PLN02328 500 P-QRKKDAIQRLGYGLLNKVALLFPYNFWGGEI-D-TFGHLTEDPSMRGEFFLFYSYSS-----V-SGGPLLIALVAGDA 570 (808)
T ss_pred C-HHHHHHHHcCCCcceEEEEEEeCCccccCCC-C-ceEEEeecCCCCceEEEEecCCC-----C-CCCcEEEEEecChh
Confidence 3 3344788999999999999999999985321 1 2221 11 11111222221 1 234444443332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhccC--CCCCeeeeEEEEEeCCCcccc------CCCCCC-CCCCCCCCC--CCEEEee
Q 013390 303 ANELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPKSLTHF------FPGSYK-YMMRGFTSF--PNLFMAG 371 (444)
Q Consensus 303 ~~~~~~~~~ee~~~~~l~~l~~~~p~--~~~~~~~~~~v~r~~~~~~~~------~pg~~~-~~p~~~~~~--~~l~laG 371 (444)
+..+..++++++++.+++.|.++|+. .....++...+++|..+.+.+ .||... ..+....|+ ++|||||
T Consensus 571 A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAG 650 (808)
T PLN02328 571 AVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAG 650 (808)
T ss_pred hHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEE
Confidence 34566789999999999999999963 211257788889997664332 234321 112223443 5899999
Q ss_pred cccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 372 DWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 372 d~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
++|+..|+ ++|+||+.||.++|++|++.+..
T Consensus 651 EaTs~~~~-GtVhGAi~SGlRAA~eIl~~~~~ 681 (808)
T PLN02328 651 EATNKQYP-ATMHGAFLSGMREAANILRVARR 681 (808)
T ss_pred hhHhCCCC-eEhHHHHHHHHHHHHHHHHHHhh
Confidence 99998888 89999999999999999998763
No 19
>PLN02568 polyamine oxidase
Probab=99.88 E-value=3.5e-21 Score=195.48 Aligned_cols=296 Identities=14% Similarity=0.086 Sum_probs=195.6
Q ss_pred CccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhc--------C-----C-----Ccceeee
Q 013390 95 SITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAH--------Q-----K-----NFDLVWC 156 (444)
Q Consensus 95 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~--------~-----~-----~~~~~~~ 156 (444)
+.|+.+|++++ +++ ..+.+.+|+..+.++.++++.+...++..+..+.... . . ......+
T Consensus 160 ~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i 237 (539)
T PLN02568 160 GGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITI 237 (539)
T ss_pred CCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEE
Confidence 45999999985 444 5667778888999998898888877766655432000 0 0 0112345
Q ss_pred cCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHH------hhhccC
Q 013390 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE------LIKNSI 229 (444)
Q Consensus 157 ~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~~~~------ll~~~~ 229 (444)
.||++ .|++.|++.+. +.+|++|++|++|..++ ++|+ |.+ +|+++.||+||+|+|+.++++ +...|+
T Consensus 238 ~gG~~-~Li~~La~~L~--~~~I~ln~~V~~I~~~~--~~v~-V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~ 311 (539)
T PLN02568 238 AKGYL-SVIEALASVLP--PGTIQLGRKVTRIEWQD--EPVK-LHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPP 311 (539)
T ss_pred CCcHH-HHHHHHHhhCC--CCEEEeCCeEEEEEEeC--CeEE-EEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCC
Confidence 68855 59999988774 45799999999999987 4475 555 477899999999999999985 345555
Q ss_pred CCChHHHHHhhcCCCccEEEEEEEeccCCCCCC-CC---c--eeeccCC-------CcccceeeccccccccCCCCCeEE
Q 013390 230 LCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN-VS---N--ACSGFGD-------SLAWTFFDLNKIYDEHKDDSATVI 296 (444)
Q Consensus 230 l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~-~~---~--~~~g~~~-------~~~~~~~d~~~~~~~~~~~~~~~~ 296 (444)
+| ....+.++.+.+..+.++++.|++++|... .. . .+..... ...+.+.......+. ..+..++
T Consensus 312 LP-~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vL 388 (539)
T PLN02568 312 LP-DFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPI--HKNSSVL 388 (539)
T ss_pred CC-HHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhcccccccc--CCCCCEE
Confidence 63 334578899999999999999999987421 10 0 0000000 000000000000010 1233454
Q ss_pred EEEEec--CCCCCCCCHHHHHHHHHHHHHhhccCCC---------------------CCeeeeEEEEEeCCCc-----cc
Q 013390 297 QADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDFS---------------------TATVMDHKIRRFPKSL-----TH 348 (444)
Q Consensus 297 ~~~~~~--~~~~~~~~~ee~~~~~l~~l~~~~p~~~---------------------~~~~~~~~v~r~~~~~-----~~ 348 (444)
.+++.+ +..+..++++++++.+++.|.++|+... ...++...+++|.... +.
T Consensus 389 ~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs 468 (539)
T PLN02568 389 LSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYS 468 (539)
T ss_pred EEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccC
Confidence 444433 3456779999999999999999996321 0246777778885432 22
Q ss_pred c-CCCCCC-CCCCCCCCC-------------CCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 349 F-FPGSYK-YMMRGFTSF-------------PNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 349 ~-~pg~~~-~~p~~~~~~-------------~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
+ .||+.. .+.....|+ ++|||||+.|+..|+ ++|+||+.||+++|++|++.++
T Consensus 469 ~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~-~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 469 YVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHY-STTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred CCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCcc-chHHHHHHHHHHHHHHHHHHhc
Confidence 2 345432 112223343 379999999998898 8999999999999999999875
No 20
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.88 E-value=3.6e-20 Score=188.69 Aligned_cols=293 Identities=15% Similarity=0.162 Sum_probs=184.8
Q ss_pred ccCccHHHHHHHhC-CCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCCCcceeeecCCcchhhHHHHHHH
Q 013390 93 YDSITARELFKQFG-CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDS 171 (444)
Q Consensus 93 ~d~~s~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~ 171 (444)
+...|+.+|+++++ +.++.++.++...+....+.++++.++...+.++... ... ....+++||++. |+++|++.
T Consensus 167 ~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~G~~~~~GG~~~-l~~aL~~~ 241 (492)
T TIGR02733 167 LSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMA--QAP--HGLWHLHGSMQT-LSDRLVEA 241 (492)
T ss_pred hhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhcc--ccC--CCceeecCcHHH-HHHHHHHH
Confidence 45799999999863 3333467777765543456678888877654443321 111 223568999664 99999999
Q ss_pred HHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CC-----eEEecCEEEEccChhhHHHhhhccCCCChHHHHHhhcCCCc
Q 013390 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-----ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASI 245 (444)
Q Consensus 172 l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g-----~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~l~~l~~~ 245 (444)
+++.|++|++|++|++|..++ +++++|.+ ++ +++.||+||+|+|+..+.+|++++.++ ....+.++++++.
T Consensus 242 ~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~-~~~~~~~~~~~~s 318 (492)
T TIGR02733 242 LKRDGGNLLTGQRVTAIHTKG--GRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLP-PGYRKRLKKLPEP 318 (492)
T ss_pred HHhcCCEEeCCceEEEEEEeC--CeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCC-HHHHHHHhcCCCC
Confidence 999999999999999999987 44555554 33 578999999999999999988764442 2334567777765
Q ss_pred c-EEEEEEEeccCCC-CC-CCCceeeccCCCcccceeeccccccccCCCCCeEEEEE-EecCCCCCC-------CCHHHH
Q 013390 246 D-VVSVKLWFDKKVT-VP-NVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD-FYHANELMP-------LKDDQV 314 (444)
Q Consensus 246 ~-~~~v~l~~d~~~~-~~-~~~~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~ee~ 314 (444)
+ .+++++.+++... .. .++. ...++.. ...+...+...+..++++.+.+.+. +.+...|.. ..++++
T Consensus 319 ~~~~~v~l~~~~~~~~~~~~~~~-~~~~~~~-~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~~ 396 (492)
T TIGR02733 319 SGAFVFYLGVKRAALPVDCPPHL-QFLSDHQ-GSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAKKKQY 396 (492)
T ss_pred CceEEEEEeecccccCCCCCcce-eeccCCC-ceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHHHHHHH
Confidence 4 6688999987421 11 1111 1111111 1111111212233343455554332 222222221 124557
Q ss_pred HHHHHHHHHhhccCCCCCeeeeEEEEEeCCCcccc-----------CC--CCC-CCCCCCCCCCCCEEEeecccccCCCc
Q 013390 315 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHF-----------FP--GSY-KYMMRGFTSFPNLFMAGDWITTRHGS 380 (444)
Q Consensus 315 ~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~-----------~p--g~~-~~~p~~~~~~~~l~laGd~~~~~~~~ 380 (444)
.+++++.+++.+|+++. .++...+. .|.+.-.+ .. ... ..++..+++++|||+||+++++|
T Consensus 397 ~~~il~~le~~~p~l~~-~i~~~~v~-TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~pG--- 471 (492)
T TIGR02733 397 TQTIIERLGHYFDLLEE-NWVHVELA-TPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIHPG--- 471 (492)
T ss_pred HHHHHHHHHHHCCCccc-cEEEEEcc-CCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCccCCC---
Confidence 88999999999999975 56665553 55443111 11 110 12334468999999999999653
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q 013390 381 WSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 381 ~~~egAv~SG~~aA~~il~~ 400 (444)
+++.|++.||+.+|+.|++.
T Consensus 472 ~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 472 EGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred CcHHHHHHHHHHHHHHHhhc
Confidence 47899999999999999863
No 21
>PLN02976 amine oxidase
Probab=99.87 E-value=7.1e-21 Score=202.58 Aligned_cols=260 Identities=17% Similarity=0.146 Sum_probs=174.1
Q ss_pred CCChhhchHHHHHHHHHHHHHhcCCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecC--------CCCe
Q 013390 125 FAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE--------ERCC 196 (444)
Q Consensus 125 ~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~--------~~g~ 196 (444)
+.+++++|+.++..-- .+ ..-++ ....+.||++ .|++.|++.+ .|++|++|++|.+++ ++++
T Consensus 904 aa~L~eVSl~~~~qd~-~y--~~fgG-~~~rIkGGYq-qLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dG 973 (1713)
T PLN02976 904 AALLKEVSLPYWNQDD-VY--GGFGG-AHCMIKGGYS-NVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKK 973 (1713)
T ss_pred cCCHHHhhhhhhhccc-cc--ccCCC-ceEEeCCCHH-HHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCc
Confidence 6789999986432100 01 11112 2334679965 5999988744 599999999999852 1134
Q ss_pred EEEEEeC-CeEEecCEEEEccChhhHH--HhhhccCCCChHHHHHhhcCCCccEEEEEEEeccCCCCCCCCceeeccCC-
Q 013390 197 ISDVVCG-KETYSAGAVVLAVGISTLQ--ELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD- 272 (444)
Q Consensus 197 v~~v~~~-g~~~~ad~VI~a~p~~~~~--~ll~~~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~- 272 (444)
|. |.+. |+++.||+||+|+|+.+++ .+...|+||. .....+..+.+..+.++++.|+++||.... .++|...
T Consensus 974 Vt-VtTsDGetftADaVIVTVPLGVLKag~I~FsPPLPe-~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~--d~FG~s~e 1049 (1713)
T PLN02976 974 VK-VSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPD-WKYSSIQRLGFGVLNKVVLEFPEVFWDDSV--DYFGATAE 1049 (1713)
T ss_pred EE-EEECCCCEEEeceEEEeCCHHHhhhcccccCCcccH-HHHHHHHhhccccceEEEEEeCCccccCCC--Cccccccc
Confidence 65 5554 7789999999999999987 4556666642 234678899999999999999999995421 1333211
Q ss_pred -----CcccceeeccccccccCCCCCeEEEEEEec--CCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCC
Q 013390 273 -----SLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS 345 (444)
Q Consensus 273 -----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~ 345 (444)
+..+.+|+... ..+..++...+.+ +..+..++++++++.+++.|.++||......++.+.+++|...
T Consensus 1050 dtdlrG~~~~~wnlr~------psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssD 1123 (1713)
T PLN02976 1050 ETDLRGQCFMFWNVKK------TVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRD 1123 (1713)
T ss_pred cCCCCceEEEeccCCC------CCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCC
Confidence 11122232211 1233344443332 3456678999999999999999998543235788888999654
Q ss_pred cc-----c-cCCCCCC-CCCCCCCCCCC-EEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCCCC
Q 013390 346 LT-----H-FFPGSYK-YMMRGFTSFPN-LFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGS 405 (444)
Q Consensus 346 ~~-----~-~~pg~~~-~~p~~~~~~~~-l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~~~ 405 (444)
.+ . ..||... .+..+..|+.| |||||++|+..|+ ++|+||+.||++||++|+..++.+.
T Consensus 1124 PySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~p-GTVHGAIeSG~RAA~eIL~~L~~G~ 1190 (1713)
T PLN02976 1124 PFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHP-DTVGGAMMSGLREAVRIIDILNTGN 1190 (1713)
T ss_pred CCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCc-chHHHHHHHHHHHHHHHHHHHHccC
Confidence 32 2 2345432 22233467766 9999999998898 8999999999999999999996543
No 22
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.87 E-value=2.1e-21 Score=194.54 Aligned_cols=296 Identities=21% Similarity=0.146 Sum_probs=183.0
Q ss_pred hhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHh----cCCCcceeeecCCcchhhHH
Q 013390 91 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA----HQKNFDLVWCRGTLREKIFE 166 (444)
Q Consensus 91 ~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~----~~~~~~~~~~~gg~~~~l~~ 166 (444)
...+..++.+|+......+.....++.++.....+..+...++......+...... ...........|+ +..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~ 213 (450)
T PF01593_consen 138 LEDDLESFLEFLDSQSFSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGG----LSL 213 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTT----THH
T ss_pred hhhhhhhhhhhhhhhhhhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccc----hhH
Confidence 34556788888876655555444355566666666666666666333333222100 0111112223344 334
Q ss_pred HHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhccCCCChH-HHHHhhcCCCc
Q 013390 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNRE-EFLKVLNLASI 245 (444)
Q Consensus 167 ~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~-~~~~l~~l~~~ 245 (444)
.+...++..|++|++|++|++|+.++ ++|+++..+|++++||+||+|+|+..+.++...+.+ +. ..+.++.+.+.
T Consensus 214 ~~~~~~~~~g~~i~l~~~V~~I~~~~--~~v~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l--~~~~~~a~~~~~~~ 289 (450)
T PF01593_consen 214 ALALAAEELGGEIRLNTPVTRIERED--GGVTVTTEDGETIEADAVISAVPPSVLKNILLLPPL--PEDKRRAIENLPYS 289 (450)
T ss_dssp HHHHHHHHHGGGEESSEEEEEEEEES--SEEEEEETTSSEEEESEEEE-S-HHHHHTSEEESTS--HHHHHHHHHTEEEE
T ss_pred HHHHHHhhcCceeecCCcceeccccc--cccccccccceEEecceeeecCchhhhhhhhhcccc--cccccccccccccC
Confidence 44455556678999999999999998 678744556889999999999999999963333222 33 33667888898
Q ss_pred cEEEEEEEeccCCCCCC-CCceeeccCC-CcccceeeccccccccCCCCCeEEEEEEec--CCCCCCCCHHHHHHHHHHH
Q 013390 246 DVVSVKLWFDKKVTVPN-VSNACSGFGD-SLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSY 321 (444)
Q Consensus 246 ~~~~v~l~~d~~~~~~~-~~~~~~g~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ee~~~~~l~~ 321 (444)
++.++++.+++++|.+. ....+...+. .....+.+.+...+. +++.++...+.. ...+..++++++.+.++++
T Consensus 290 ~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~ 366 (450)
T PF01593_consen 290 SVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGR---PGGGVLTSYVGGPDAPEWDDLSDEEILERVLDD 366 (450)
T ss_dssp EEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSC---TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cceeEEEeeecccccccccccceecccCccccccccccccCccc---ccCCcceeeeeccccchhcccchhhhHHHHHHH
Confidence 89999999999998553 1111211112 111112222221111 234444433332 2457788999999999999
Q ss_pred HHhhccCCCCCeeeeEEEEEeCCCc-ccc-----CCCCC-CCCCCCCCCC-CCEEEeecccccCCCcchhhHHHHHHHHH
Q 013390 322 LSKCIKDFSTATVMDHKIRRFPKSL-THF-----FPGSY-KYMMRGFTSF-PNLFMAGDWITTRHGSWSQERSYVTGLEA 393 (444)
Q Consensus 322 l~~~~p~~~~~~~~~~~v~r~~~~~-~~~-----~pg~~-~~~p~~~~~~-~~l~laGd~~~~~~~~~~~egAv~SG~~a 393 (444)
|++++|.....++....+.+|.... +.. .++.. ..++...+++ +||||||||++++++ +++|||+.||++|
T Consensus 367 L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~-~~~~gA~~sG~~a 445 (450)
T PF01593_consen 367 LRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYP-GGIEGAILSGRRA 445 (450)
T ss_dssp HHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSST-TSHHHHHHHHHHH
T ss_pred hhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCC-CcHHHHHHHHHHH
Confidence 9999995222356677778887632 222 12221 1234455677 699999999998887 7999999999999
Q ss_pred HHHHH
Q 013390 394 ANRVV 398 (444)
Q Consensus 394 A~~il 398 (444)
|++|+
T Consensus 446 A~~il 450 (450)
T PF01593_consen 446 AEEIL 450 (450)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99986
No 23
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.86 E-value=1.3e-20 Score=179.32 Aligned_cols=231 Identities=15% Similarity=0.143 Sum_probs=165.5
Q ss_pred cCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCC-eEEecCEEEEccChhhHHHhhhccCCCChHH
Q 013390 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQELIKNSILCNREE 235 (444)
Q Consensus 157 ~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g-~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~ 235 (444)
.|||. .|.+++++. .|..|+++++|.+|.++++ +|+ |++.. +++.+|.||||+|+.++..+..++.+ +.+.
T Consensus 205 ~GGmd-~la~Afa~q---l~~~I~~~~~V~rI~q~~~--gV~-Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l-~~~~ 276 (450)
T COG1231 205 LGGMD-QLAEAFAKQ---LGTRILLNEPVRRIDQDGD--GVT-VTADDVGQYVADYVLVTIPLAILGQIDFAPLL-PAEY 276 (450)
T ss_pred CccHH-HHHHHHHHH---hhceEEecCceeeEEEcCC--eEE-EEeCCcceEEecEEEEecCHHHHhhcccCCCC-CHHH
Confidence 38854 588888764 4678999999999999984 487 77775 88999999999999999999877644 2444
Q ss_pred HHHhhcCCCccEEEEEEEeccCCCCCCC-Cceeecc-CCCcccceeeccccccccCCCCCeEEEEEEe---cCCCCCCCC
Q 013390 236 FLKVLNLASIDVVSVKLWFDKKVTVPNV-SNACSGF-GDSLAWTFFDLNKIYDEHKDDSATVIQADFY---HANELMPLK 310 (444)
Q Consensus 236 ~~~l~~l~~~~~~~v~l~~d~~~~~~~~-~~~~~g~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 310 (444)
.+.++.+.|.+..++.+.|++|||.++. .++. ++ |.......++ ++. +. .+..++...|. .+..|..++
T Consensus 277 ~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~-~~tD~~~~~i~~~-s~~---~~-~G~gVl~g~~~~g~~A~~~~~~~ 350 (450)
T COG1231 277 KQAAKGVPYGSATKIGVAFSRPFWEEAGILGGE-SLTDLGLGFISYP-SAP---FA-DGPGVLLGSYAFGDDALVIDALP 350 (450)
T ss_pred HHHhcCcCcchheeeeeecCchhhhhcccCCce-EeecCCcceEecC-ccc---cC-CCceEEEeeeeccccceeEecCC
Confidence 5677888999999999999999996554 2111 11 2222222222 221 12 23444443332 345688899
Q ss_pred HHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCc------cccCCCCCC-CCCCCCCCCCCEEEeecccccCCCcchh
Q 013390 311 DDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSL------THFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQ 383 (444)
Q Consensus 311 ~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~------~~~~pg~~~-~~p~~~~~~~~l~laGd~~~~~~~~~~~ 383 (444)
++++++.++..+.++||+.....+.....++|.... ..+.||... +.|.+..+.++|||||.++.+.++ +++
T Consensus 351 ~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~-Gw~ 429 (450)
T COG1231 351 EAERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFG-GWL 429 (450)
T ss_pred HHHHHHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeeccccccc-chh
Confidence 999999999999999995443233343677786543 334555543 345556788999999966666788 899
Q ss_pred hHHHHHHHHHHHHHHHHhC
Q 013390 384 ERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 384 egAv~SG~~aA~~il~~lg 402 (444)
|||++||++||.+|...+.
T Consensus 430 eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 430 EGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999999988764
No 24
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.84 E-value=6.6e-19 Score=180.00 Aligned_cols=295 Identities=11% Similarity=0.019 Sum_probs=184.9
Q ss_pred ccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCCCcceeeecCCcchhhHHHHHHHH
Q 013390 93 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSM 172 (444)
Q Consensus 93 ~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l 172 (444)
.+..|+.+|+++...++. ++.++.. ....++.+|++.++...+..+..+ . ....++.||+. .+++.|++.+
T Consensus 159 ~~~~s~~~~~~~~~~~~~-l~~~l~~-~~~~~g~~p~~~~~~~~l~~~~~~----~--~g~~~~~gG~~-~l~~al~~~~ 229 (502)
T TIGR02734 159 LAWRSLYSKVARFFSDER-LRQAFSF-HALFLGGNPFRTPSIYALISALER----E--WGVWFPRGGTG-ALVAAMAKLA 229 (502)
T ss_pred cCcCCHHHHHHhhcCCHH-HHHHhcc-cceeeccCcccchHHHHHHHHHHh----h--ceEEEcCCCHH-HHHHHHHHHH
Confidence 467899999998755565 6667653 344667888888876543222111 1 22357889964 6999999999
Q ss_pred HhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhHH-HhhhccCCCChHHHHHhhcCCC-ccEEE
Q 013390 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSILCNREEFLKVLNLAS-IDVVS 249 (444)
Q Consensus 173 ~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~~-~ll~~~~l~~~~~~~~l~~l~~-~~~~~ 249 (444)
++.|++|+++++|++|..++ +++++|.++ |+++.||+||+|+++..+. .|++....+ ....+.++++++ .+.++
T Consensus 230 ~~~G~~i~~~~~V~~i~~~~--~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~s~s~~~ 306 (502)
T TIGR02734 230 EDLGGELRLNAEVIRIETEG--GRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRR-RYPAARLSRKRPSPSLFV 306 (502)
T ss_pred HHCCCEEEECCeEEEEEeeC--CEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccc-cccccccccCCcCCeeeE
Confidence 99999999999999999876 567778776 6789999999999997765 455443221 111234455554 46788
Q ss_pred EEEEec---cCCCCCCCCceeeccCC----------C----cccceeec-cccccccCCCCCeEEEEEE-ecC-----CC
Q 013390 250 VKLWFD---KKVTVPNVSNACSGFGD----------S----LAWTFFDL-NKIYDEHKDDSATVIQADF-YHA-----NE 305 (444)
Q Consensus 250 v~l~~d---~~~~~~~~~~~~~g~~~----------~----~~~~~~d~-~~~~~~~~~~~~~~~~~~~-~~~-----~~ 305 (444)
+++.++ +++.....++.++..+. + ....+... +...+..++++.+.+.+.. .+. ..
T Consensus 307 ~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~ 386 (502)
T TIGR02734 307 LYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVD 386 (502)
T ss_pred EEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCC
Confidence 899998 34321112222221110 0 01111111 2222334444445443322 221 12
Q ss_pred CCCCCHHHHHHHHHHHHHhh-ccCCCCCeeeeEEEEEeCCCc-----------cccCC---CCCCCCCC-CCCCCCCEEE
Q 013390 306 LMPLKDDQVVAKAVSYLSKC-IKDFSTATVMDHKIRRFPKSL-----------THFFP---GSYKYMMR-GFTSFPNLFM 369 (444)
Q Consensus 306 ~~~~~~ee~~~~~l~~l~~~-~p~~~~~~~~~~~v~r~~~~~-----------~~~~p---g~~~~~p~-~~~~~~~l~l 369 (444)
|. ...+++.+++++.+++. +|+++. .++...+. .|.+. +...+ .....||. ..++++|||+
T Consensus 387 ~~-~~k~~~~~~il~~l~~~~~p~l~~-~i~~~~~~-TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl 463 (502)
T TIGR02734 387 WS-VEGPRYRDRILAYLEERAIPGLRD-RIVVERTF-TPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYL 463 (502)
T ss_pred cH-HHHHHHHHHHHHHHHHhcCCChhH-heEEEEEc-CHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEE
Confidence 32 23567889999999998 999975 56665443 44322 11111 11123554 3578999999
Q ss_pred eecccccCCCcchhhHHHHHHHHHHHHHHHHhCCCC
Q 013390 370 AGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGS 405 (444)
Q Consensus 370 aGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~~~ 405 (444)
||+++++| +++.+|+.||+.||+.|+++++.+.
T Consensus 464 ~G~~~~pG---~Gv~g~~~sg~~~a~~il~~~~~~~ 496 (502)
T TIGR02734 464 VGAGTHPG---AGVPGVLGSAKATAKLMLGDLAPGP 496 (502)
T ss_pred eCCCCCCC---CCHHHHHHHHHHHHHHHHhhccCCC
Confidence 99999643 4789999999999999999887643
No 25
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.82 E-value=9.7e-19 Score=163.78 Aligned_cols=358 Identities=13% Similarity=0.140 Sum_probs=229.9
Q ss_pred hHHHHHHHhCCCCCCCCcc-c-----cee-ccCCccccccccccCCCCCCCccccccccCCCCChhhhhhhhhhHHHHhh
Q 013390 10 NIFSLVDELGIKPFTGWMK-S-----AQY-SEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVID 82 (444)
Q Consensus 10 ~~~~Ll~elGl~~~~~~~~-~-----~~~-~~~G~~~~~~~~~~~~~~p~p~~~~~~~~~~~ls~~~kl~~~~l~~~~~~ 82 (444)
++++|+++||++++.+..+ . ..| +..|+ +. .+| .++...+.+.+-+....+. ..++..+.+
T Consensus 79 ~~l~lv~dLGl~~e~~~i~~~~paaknr~l~~~~~------L~---~vP--~sl~~s~~~~l~p~~k~L~-~a~l~e~fr 146 (491)
T KOG1276|consen 79 ETLDLVSDLGLEDELQPIDISHPAAKNRFLYVPGK------LP---TVP--SSLVGSLKFSLQPFGKPLL-EAFLRELFR 146 (491)
T ss_pred HHHHHHHHcCccceeeecCCCChhhhheeeccCcc------cc---cCC--cccccccccccCcccchhH-HHHHhhhcc
Confidence 7899999999997766542 1 122 23444 22 333 3322222232223333332 122222212
Q ss_pred cCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHH--------------hcC
Q 013390 83 FDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--------------AHQ 148 (444)
Q Consensus 83 ~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~--------------~~~ 148 (444)
.+.-.+..|+|+++|++|+ +++++.+++++|+|.++|++|++++|+...+.-++.... +..
T Consensus 147 ----~~~~~~~~dESV~sF~~Rr-fG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~ 221 (491)
T KOG1276|consen 147 ----KKVSDPSADESVESFARRR-FGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARK 221 (491)
T ss_pred ----ccCCCCCccccHHHHHHHh-hhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh
Confidence 1111246799999999996 889999999999999999999999999988876554310 000
Q ss_pred ---------------CCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe---CC-eEEec
Q 013390 149 ---------------KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSA 209 (444)
Q Consensus 149 ---------------~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~---~g-~~~~a 209 (444)
+.+.....+||+. .+.+++.+.|...++.|.++-++..+..... |++. +.+ ++ ..+..
T Consensus 222 ~~k~~e~~~~~~~~~e~~~~~sl~gGle-~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~-~~~~-~tl~~~~~~~~~~~ 298 (491)
T KOG1276|consen 222 RTKKAETALSAQAKKEKWTMFSLKGGLE-TLPKALRKSLGEREVSISLGLKLSGNSKSRS-GNWS-LTLVDHSGTQRVVV 298 (491)
T ss_pred cCCCccchhhhhhcccccchhhhhhhHh-HhHHHHHHHhcccchhhhccccccccccccc-CCce-eEeEcCCCceeeec
Confidence 0111223568865 5999999999988899999999999998765 4443 433 23 34566
Q ss_pred CEEEEccChhhHHHhhhccCCCChHHHHHhhcCCCccEEEEEEEeccC-CCCC-CCCceeec--cCC--Ccccceeeccc
Q 013390 210 GAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKK-VTVP-NVSNACSG--FGD--SLAWTFFDLNK 283 (444)
Q Consensus 210 d~VI~a~p~~~~~~ll~~~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~-~~~~-~~~~~~~g--~~~--~~~~~~~d~~~ 283 (444)
++++.|+|+..+.+++.... ......+..+.|.++..|.+.|..+ ...+ +.++.+.. ... .+.-++||...
T Consensus 299 ~~~~~t~~~~k~a~ll~~~~---~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~ 375 (491)
T KOG1276|consen 299 SYDAATLPAVKLAKLLRGLQ---NSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSML 375 (491)
T ss_pred cccccccchHHhhhhccccc---hhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeeccc
Confidence 77778999999999998752 3333567889999999999999775 2212 22332221 111 12234787443
Q ss_pred cccccCCCCCeEEEEEEe---cCCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCC
Q 013390 284 IYDEHKDDSATVIQADFY---HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG 360 (444)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~ 360 (444)
. +... +.+.++..++. ........+.||+++.+.++|.+.+..-. .+....++-|++.+|.|..|+.......
T Consensus 376 F-p~~~-~s~~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~--~P~~~~v~l~~~ciPqy~vGh~~~le~a 451 (491)
T KOG1276|consen 376 F-PDRS-PSPKVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGISN--KPVSVNVHLWKNCIPQYTVGHDDVLEAA 451 (491)
T ss_pred C-CCCC-CCceEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCCCC--CcccccceehhhcccceecchHHHHHHH
Confidence 3 3222 12222222221 11223457899999999999999986544 3566666679999999999987542221
Q ss_pred C-----CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHH
Q 013390 361 F-----TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 398 (444)
Q Consensus 361 ~-----~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il 398 (444)
+ .+-.+|++||.|... .++..+|.||+.+|.+++
T Consensus 452 ~~~l~~~~g~~l~l~G~~y~G----v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 452 KSMLTDSPGLGLFLGGNHYGG----VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred HHHHHhCCCCceEeeccccCC----CChhHHHHhhHHHHHhhc
Confidence 1 233589999999863 368899999999998775
No 26
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.81 E-value=6.5e-18 Score=171.99 Aligned_cols=294 Identities=16% Similarity=0.140 Sum_probs=182.4
Q ss_pred cCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCCCcceeeecCCcchhhHHHHHHHHH
Q 013390 94 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMR 173 (444)
Q Consensus 94 d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l~ 173 (444)
-..|+.++++++..++. ++.++...+......++.+.++......+... ......++.||+. .+++.|++.++
T Consensus 168 ~~~s~~~~~~~~~~~~~-l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~-----~~~g~~~~~gG~~-~l~~~L~~~~~ 240 (493)
T TIGR02730 168 LPQNAGDIARRYIRDPG-LLKFIDIECFCWSVVPADQTPMINAGMVFSDR-----HYGGINYPKGGVG-QIAESLVKGLE 240 (493)
T ss_pred hhccHHHHHHHhcCCHH-HHHHHHHHHHhccCCCcccchhhhHHHhhccc-----ccceEecCCChHH-HHHHHHHHHHH
Confidence 45899999999877776 56677643333323345677765554333211 1123467889965 59999999999
Q ss_pred hcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhHH-HhhhccCCCChHHHHHhhcCCC-ccEEEE
Q 013390 174 TRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSILCNREEFLKVLNLAS-IDVVSV 250 (444)
Q Consensus 174 ~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~~-~ll~~~~l~~~~~~~~l~~l~~-~~~~~v 250 (444)
++|++|+++++|++|..++ +++.+|.++ |++++||+||+|++++.+. +|+++...+ ......++++++ .+.+++
T Consensus 241 ~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~-~~~~~~~~~~~~s~s~~~~ 317 (493)
T TIGR02730 241 KHGGQIRYRARVTKIILEN--GKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLP-KKEKNWQRNYVKSPSFLSL 317 (493)
T ss_pred HCCCEEEeCCeeeEEEecC--CcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccc-hhhHHHHhhccCCCceEEE
Confidence 9999999999999999876 568888885 7789999999999887554 677654332 222233345554 458899
Q ss_pred EEEeccCCCCC--CCCceeec-c---CCCcccceeec-cccccccCCCCCeEEEEEEe-cCCCCCC-------CCHHHHH
Q 013390 251 KLWFDKKVTVP--NVSNACSG-F---GDSLAWTFFDL-NKIYDEHKDDSATVIQADFY-HANELMP-------LKDDQVV 315 (444)
Q Consensus 251 ~l~~d~~~~~~--~~~~~~~g-~---~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~ee~~ 315 (444)
++.++....+. ..++.++. . .......+... +...+..++++.+++.+... ....|.. ..++++.
T Consensus 318 ~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~ 397 (493)
T TIGR02730 318 HLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADA 397 (493)
T ss_pred EEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHHH
Confidence 99998854211 11111211 0 00101111111 22223444445555433221 1122321 1245688
Q ss_pred HHHHHHHHhhccCCCCCeeeeEEEEEeCCCcccc---CCCCC----------CCC-CCCCCCCCCEEEeecccccCCCcc
Q 013390 316 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHF---FPGSY----------KYM-MRGFTSFPNLFMAGDWITTRHGSW 381 (444)
Q Consensus 316 ~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~---~pg~~----------~~~-p~~~~~~~~l~laGd~~~~~~~~~ 381 (444)
+.+++.+++++|++++ .++...+. .|.+.-.| .-|.+ ..+ |..+++++|||+||+++++ ++
T Consensus 398 ~~il~~l~~~~p~l~~-~I~~~~~~-TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~p---G~ 472 (493)
T TIGR02730 398 ERIIDRLEKIFPGLDS-AIDYKEVG-TPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFP---GQ 472 (493)
T ss_pred HHHHHHHHHHCCChhh-cEEEEEee-CchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCC---CC
Confidence 9999999999999975 56655443 45443111 01111 011 3456899999999999964 25
Q ss_pred hhhHHHHHHHHHHHHHHHHhC
Q 013390 382 SQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 382 ~~egAv~SG~~aA~~il~~lg 402 (444)
++.+|+.||+.+|+.|++++|
T Consensus 473 Gv~g~~~sG~~~a~~i~~~~~ 493 (493)
T TIGR02730 473 GLNAVAFSGFACAHRVAADLG 493 (493)
T ss_pred CHHHHHHHHHHHHHHHHhhcC
Confidence 789999999999999998754
No 27
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.75 E-value=1.9e-16 Score=144.63 Aligned_cols=225 Identities=17% Similarity=0.111 Sum_probs=147.0
Q ss_pred CChhHHHHHHHhCCCCCCCCcccceec-cCCccccccccccCCCCCCCccccccccCCCCC------hhhhhhhhhhHHH
Q 013390 7 PFRNIFSLVDELGIKPFTGWMKSAQYS-EEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLP------LVDRLTSLPLMAA 79 (444)
Q Consensus 7 ~~~~~~~Ll~elGl~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~~p~p~~~~~~~~~~~ls------~~~kl~~~~l~~~ 79 (444)
+|+++.+|++++|++.+.......+-. ..|.+|+ . .+-+..+....+ ..+. +.+++++-+.
T Consensus 71 tYpnl~~Lf~~iGv~t~as~Msf~v~~d~gglEy~-----g---~tgl~~L~aqk~-n~l~pRf~~mlaeiLrf~r~--- 138 (447)
T COG2907 71 TYPNLTRLFKTIGVDTKASFMSFSVSLDMGGLEYS-----G---LTGLAGLLAQKR-NLLRPRFPCMLAEILRFYRS--- 138 (447)
T ss_pred CcchHHHHHHHcCCCCcccceeEEEEecCCceeec-----c---CCCccchhhccc-cccchhHHHHHHHHHHHhhh---
Confidence 899999999999999876554322221 2354432 1 111111111111 1111 1222222111
Q ss_pred HhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCC-----Ccc-e
Q 013390 80 VIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK-----NFD-L 153 (444)
Q Consensus 80 ~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~-----~~~-~ 153 (444)
+..+.+.+...++|+.+||++++++..+.+.||.|+..++++.+..+++..-+..+++.+ .+.+ +.. .
T Consensus 139 ----~~~~~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~--~nhGll~l~~rp~w 212 (447)
T COG2907 139 ----DLAPSDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFT--DNHGLLYLPKRPTW 212 (447)
T ss_pred ----hccchhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHH--hccCceecCCCCce
Confidence 112333445679999999999999999999999999999999999999875555444332 2211 111 1
Q ss_pred eeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhccCCCCh
Q 013390 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNR 233 (444)
Q Consensus 154 ~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~ 233 (444)
....|| +...+++|++ ..+++|+++++|++|..-.+ | |+.+..+|++..+|+||+|+.++++..|++++. +
T Consensus 213 rtV~gg-S~~yvq~laa---~~~~~i~t~~~V~~l~rlPd-G-v~l~~~~G~s~rFD~vViAth~dqAl~mL~e~s---p 283 (447)
T COG2907 213 RTVAGG-SRAYVQRLAA---DIRGRIETRTPVCRLRRLPD-G-VVLVNADGESRRFDAVVIATHPDQALALLDEPS---P 283 (447)
T ss_pred eEcccc-hHHHHHHHhc---cccceeecCCceeeeeeCCC-c-eEEecCCCCccccceeeeecChHHHHHhcCCCC---H
Confidence 234577 6667777765 34578999999999999886 5 654455589899999999999999999999873 5
Q ss_pred HHHHHhhcCCCccEEEEEEEeccCCC
Q 013390 234 EEFLKVLNLASIDVVSVKLWFDKKVT 259 (444)
Q Consensus 234 ~~~~~l~~l~~~~~~~v~l~~d~~~~ 259 (444)
.+.+.+..+.|... ...++-|..+.
T Consensus 284 ~e~qll~a~~Ys~n-~aVlhtd~~lm 308 (447)
T COG2907 284 EERQLLGALRYSAN-TAVLHTDASLM 308 (447)
T ss_pred HHHHHHHhhhhhhc-eeEEeeccccc
Confidence 66677888888653 34455565444
No 28
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.73 E-value=2.2e-16 Score=157.83 Aligned_cols=231 Identities=22% Similarity=0.256 Sum_probs=160.6
Q ss_pred eecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHH--hhhccCCC
Q 013390 155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE--LIKNSILC 231 (444)
Q Consensus 155 ~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~~~~--ll~~~~l~ 231 (444)
...+|+.. ++..+++ |.+|+++.+|.+|.+.++ +.+ .++. ++..+.+|+||+|+|+.+++. +...|++|
T Consensus 213 ~~~~G~~~-v~~~la~-----~l~I~~~~~v~~i~~~~~-~~~-~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp 284 (501)
T KOG0029|consen 213 LMKGGYEP-VVNSLAE-----GLDIHLNKRVRKIKYGDD-GAV-KVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLP 284 (501)
T ss_pred HhhCCccH-HHhhcCC-----CcceeeceeeEEEEEecC-Cce-EEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCc
Confidence 34577544 6666643 889999999999999886 533 2333 345599999999999999987 66666553
Q ss_pred ChHHHHHhhcCCCccEEEEEEEeccCCCCCCCCceeeccC--C-Cccc--ceeeccccccccCCCCCeEEEEEEe--cCC
Q 013390 232 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG--D-SLAW--TFFDLNKIYDEHKDDSATVIQADFY--HAN 304 (444)
Q Consensus 232 ~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~--~-~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~--~~~ 304 (444)
....+.++++....+.++.+.|++.+|.+.. .++|.. . ...+ .++|.... .+..++..... .+.
T Consensus 285 -~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~--d~fg~~~~~~~~~~~~~f~~~~~~------~~~~~l~~~~~~~~a~ 355 (501)
T KOG0029|consen 285 -RWKQEAIDRLGFGLVNKVILEFPRVFWDQDI--DFFGIVPETSVLRGLFTFYDCKPV------AGHPVLMSVVVGEAAE 355 (501)
T ss_pred -HHHHHHHHhcCCCceeEEEEEeccccCCCCc--CeEEEccccccccchhhhhhcCcc------CCCCeEEEEehhhhhH
Confidence 3445789999999999999999999994321 133321 1 1111 23333211 12223222222 245
Q ss_pred CCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCcccc------CCCCCCC-CCCCCCCCCC-EEEeeccccc
Q 013390 305 ELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHF------FPGSYKY-MMRGFTSFPN-LFMAGDWITT 376 (444)
Q Consensus 305 ~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~------~pg~~~~-~p~~~~~~~~-l~laGd~~~~ 376 (444)
.+..++++++++.++..|+++|+......++++.+.+|....... .++.... -..+..|+.| +||||++|..
T Consensus 356 ~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~ 435 (501)
T KOG0029|consen 356 RVETLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSR 435 (501)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcc
Confidence 677899999999999999999994333468889999995543222 2222111 1233467888 9999999999
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 377 RHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 377 ~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
.|+ ++|+||..||.++|..|+..++.
T Consensus 436 ~~~-~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 436 KYP-GTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred cCC-CchHHHHHhhHHHHHHHHHHHHh
Confidence 999 89999999999999999998874
No 29
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.72 E-value=1.6e-16 Score=151.52 Aligned_cols=241 Identities=17% Similarity=0.207 Sum_probs=153.6
Q ss_pred eeecCCcchhhHHHHHHHHHhc----C--cEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHh--
Q 013390 154 VWCRGTLREKIFEPWMDSMRTR----G--CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQEL-- 224 (444)
Q Consensus 154 ~~~~gg~~~~l~~~l~~~l~~~----G--~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~~~~l-- 224 (444)
.+..-|+ ..+.+.|++.+.+. | .++++|++|.+|..+++ ++|. +++ +|+.+.||+||||++..++++-
T Consensus 216 ~~~~kGy-~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~-~~v~-l~c~dg~v~~adhVIvTvsLGvLk~~h~ 292 (498)
T KOG0685|consen 216 IWNKKGY-KRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNT-GEVK-LRCSDGEVFHADHVIVTVSLGVLKEQHH 292 (498)
T ss_pred eechhHH-HHHHHHHhccCCCcchhcCchhhhcccccceeeccCCC-CcEE-EEEeCCcEEeccEEEEEeechhhhhhhh
Confidence 3444563 34788887755422 2 35677799999999976 6786 666 4899999999999999999862
Q ss_pred -hhccCCCChHHHHHhhcCCCccEEEEEEEeccCCCCCCCCcee--eccCCC-------c-ccceeeccccccccCCCCC
Q 013390 225 -IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNAC--SGFGDS-------L-AWTFFDLNKIYDEHKDDSA 293 (444)
Q Consensus 225 -l~~~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~--~g~~~~-------~-~~~~~d~~~~~~~~~~~~~ 293 (444)
+..|++| ....++|+++.++.+.+++|.|.+|+|++ +++.+ ...+.. . .|. -+.....+-. ...
T Consensus 293 ~lF~P~LP-~~K~~AIe~lgfGtv~KiFLE~E~pfwp~-~~~~i~~lw~~e~l~e~r~~~~~w~-~~~~~f~~v~--~~~ 367 (498)
T KOG0685|consen 293 KLFVPPLP-AEKQRAIERLGFGTVNKIFLEFEEPFWPS-DWNGIQLLWLDEDLEELRSTLDAWE-EDIMGFQPVS--WAP 367 (498)
T ss_pred hhcCCCCC-HHHHHHHHhccCCccceEEEEccCCCCCC-CCceeEEEEecCcHHHHhhhhHHHH-hhceEEEEcC--cch
Confidence 3344453 34457899999999999999999999953 32211 111111 0 110 0111111110 123
Q ss_pred eEEEEEEec--CCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCC-----cccc-CCCCCCC--------C
Q 013390 294 TVIQADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS-----LTHF-FPGSYKY--------M 357 (444)
Q Consensus 294 ~~~~~~~~~--~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~-----~~~~-~pg~~~~--------~ 357 (444)
.++..++.+ +..+..+++||+.+.+...|.+++++..-..+....-..|... .+.| .+|+... .
T Consensus 368 ~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~ 447 (498)
T KOG0685|consen 368 NVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPL 447 (498)
T ss_pred hhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccC
Confidence 555566553 4567789999999999999999997654323333222234221 1222 2222110 1
Q ss_pred CC-CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 358 MR-GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 358 p~-~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
|. ..++-+.|.|||+.|+..+. .++.||+.||++.|+++++.+..
T Consensus 448 p~~~~~~~p~I~FAGEaThr~~Y-sTthGA~~SG~REA~RL~~~y~~ 493 (498)
T KOG0685|consen 448 PLTLVTGRPQILFAGEATHRTFY-STTHGAVLSGWREADRLLEHYES 493 (498)
T ss_pred CccccCCCceEEEccccccccce-ehhhhhHHhhHHHHHHHHHHHHh
Confidence 11 11244689999999986565 79999999999999999998764
No 30
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.63 E-value=1.3e-13 Score=130.35 Aligned_cols=238 Identities=15% Similarity=0.126 Sum_probs=148.7
Q ss_pred ceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhHH-HhhhccC
Q 013390 152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSI 229 (444)
Q Consensus 152 ~~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~~-~ll~~~~ 229 (444)
...|+.|||+. +.+++++.+++.|++|.+++.|++|..++ |++.+|.+. |++++++.||++..++.+. +|++...
T Consensus 255 ~~~Yp~GG~Ga-vs~aia~~~~~~GaeI~tka~Vq~Illd~--gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~ 331 (561)
T KOG4254|consen 255 GWGYPRGGMGA-VSFAIAEGAKRAGAEIFTKATVQSILLDS--GKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEA 331 (561)
T ss_pred cccCCCCChhH-HHHHHHHHHHhccceeeehhhhhheeccC--CeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCcc
Confidence 35789999875 99999999999999999999999999988 789999986 8889999999999998765 8999887
Q ss_pred CCChHHHHHhhcCCCc-cEEE----EEEEeccCCCCCCCCcee---eccC-------------CC----cccceeec-cc
Q 013390 230 LCNREEFLKVLNLASI-DVVS----VKLWFDKKVTVPNVSNAC---SGFG-------------DS----LAWTFFDL-NK 283 (444)
Q Consensus 230 l~~~~~~~~l~~l~~~-~~~~----v~l~~d~~~~~~~~~~~~---~g~~-------------~~----~~~~~~d~-~~ 283 (444)
+|. + + .++++.+. ++.+ .++.....-..+.++..+ ...+ ++ ....++.. |.
T Consensus 332 LPe-e-f-~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~ 408 (561)
T KOG4254|consen 332 LPE-E-F-VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSS 408 (561)
T ss_pred CCc-h-h-hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEecccc
Confidence 742 2 2 34444332 2221 222221111111111111 0000 00 01111111 33
Q ss_pred cccccCCCCCeEEEEEE-ecCCCCCCC-------CHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCcc--------
Q 013390 284 IYDEHKDDSATVIQADF-YHANELMPL-------KDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLT-------- 347 (444)
Q Consensus 284 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~-------- 347 (444)
..+.+++++.+++.+.. +....|.+. -+++..+++++.+++++|+++. .++.+.+- .|...-
T Consensus 409 lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfss-sv~~~dvg-TP~t~qr~l~~~~G 486 (561)
T KOG4254|consen 409 LDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSS-SVESYDVG-TPPTHQRFLGRPGG 486 (561)
T ss_pred cCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccc-eEEEEecC-CCchhhHHhcCCCC
Confidence 34556666777765532 222334332 3567889999999999999986 46665543 443321
Q ss_pred ccCC---CCC---CCCCCC-----CCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 348 HFFP---GSY---KYMMRG-----FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 348 ~~~p---g~~---~~~p~~-----~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
.+.+ +.. -.+|.. ++|++|||+||+.+.+| +++-+|. |+.+|...+.+.+
T Consensus 487 n~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPG---gGV~a~a--G~~~A~~a~~~~~ 547 (561)
T KOG4254|consen 487 NIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPG---GGVMAAA--GRLAAHSAILDRK 547 (561)
T ss_pred cccCcccccccccccCCccccccCCCCCCceEEecCCCCCC---CCccccc--hhHHHHHHhhhhh
Confidence 1112 111 124544 68999999999998753 4455443 8899988877765
No 31
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.62 E-value=1e-15 Score=135.53 Aligned_cols=221 Identities=15% Similarity=0.085 Sum_probs=147.3
Q ss_pred CCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC--CeEEecCEEEEccChhhHHHhhhccCCC-ChH
Q 013390 158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGISTLQELIKNSILC-NRE 234 (444)
Q Consensus 158 gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~--g~~~~ad~VI~a~p~~~~~~ll~~~~l~-~~~ 234 (444)
-||+. |++.|+ ...+|.++++|++|...+ +.+ .+.++ ++...+|.||+|+|++++..|+...... +..
T Consensus 105 pgmsa-lak~LA-----tdL~V~~~~rVt~v~~~~--~~W-~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~ 175 (331)
T COG3380 105 PGMSA-LAKFLA-----TDLTVVLETRVTEVARTD--NDW-TLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAA 175 (331)
T ss_pred cchHH-HHHHHh-----ccchhhhhhhhhhheecC--Cee-EEEecCCCcccccceEEEecCCCcchhhcCcccccchHH
Confidence 36543 655444 345799999999999986 434 47874 4567999999999999999998642111 233
Q ss_pred HHHHhhcCCCccEEEEEEEeccCCCCCCCCceeeccCCCcccceeeccccccccCCCCCeEEEEEEec--CCCCCCCCHH
Q 013390 235 EFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDD 312 (444)
Q Consensus 235 ~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e 312 (444)
.++.+..+.|.|++++.+.|..+...+-+ +.+-.+..+.|.--|.++ +... +.+..+.+..++ ++...+.++|
T Consensus 176 l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~--G~~vdg~~laWla~d~sK--~g~~-p~~~~~vvqasp~wSr~h~~~~~e 250 (331)
T COG3380 176 LRAALADVVYAPCWSAVLGYPQPLDRPWP--GNFVDGHPLAWLARDASK--KGHV-PDGEIWVVQASPDWSREHLDHPAE 250 (331)
T ss_pred HHHhhccceehhHHHHHhcCCccCCCCCC--CcccCCCeeeeeeccccC--CCCC-CcCceEEEEeCchHHHHhhcCCHH
Confidence 44678888999999999999877654433 222223345665444332 2222 233333333222 2344567888
Q ss_pred HHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCC-CCCCCEEEeecccccCCCcchhhHHHHHHH
Q 013390 313 QVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGL 391 (444)
Q Consensus 313 e~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~-~~~~~l~laGd~~~~~~~~~~~egAv~SG~ 391 (444)
+.+..+......+.+..-. .+.+...++|+++.|....+. |... ..-.+||+||||++. +-+|||+.||.
T Consensus 251 ~~i~~l~aA~~~~~~~~~~-~p~~s~~H~WrYA~P~~~~~~----~~L~ad~~~~l~~cGDwc~G----grVEgA~LSGl 321 (331)
T COG3380 251 QVIVALRAAAQELDGDRLP-EPDWSDAHRWRYAIPNDAVAG----PPLDADRELPLYACGDWCAG----GRVEGAVLSGL 321 (331)
T ss_pred HHHHHHHHhhhhccCCCCC-cchHHHhhccccccccccccC----CccccCCCCceeeecccccC----cchhHHHhccH
Confidence 8887777777777763322 577888899999987664432 2121 234579999999984 58999999999
Q ss_pred HHHHHHHHHh
Q 013390 392 EAANRVVDYL 401 (444)
Q Consensus 392 ~aA~~il~~l 401 (444)
.+|++|++.|
T Consensus 322 AaA~~i~~~L 331 (331)
T COG3380 322 AAADHILNGL 331 (331)
T ss_pred HHHHHHHhcC
Confidence 9999998754
No 32
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.55 E-value=2.2e-13 Score=137.86 Aligned_cols=287 Identities=13% Similarity=0.089 Sum_probs=155.2
Q ss_pred ccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCCCcceeeecCCcchhhHHHHHHHH
Q 013390 93 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSM 172 (444)
Q Consensus 93 ~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l 172 (444)
....++.++++.. +..+.++..+........ .+|.+.+ .+..++... . ....+.+++|||+ .|+++|++.+
T Consensus 164 ~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~--a~~~~~~~~--~--~~~G~~~p~GG~~-al~~aL~~~~ 234 (487)
T COG1233 164 FSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPP--ALYLLLSHL--G--LSGGVFYPRGGMG-ALVDALAELA 234 (487)
T ss_pred HhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchh--HHHHHHHHh--c--ccCCeeeeeCCHH-HHHHHHHHHH
Confidence 4567899999987 554446666654322223 5666666 222222221 2 2334578999976 4999999999
Q ss_pred HhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhHHHhhhccCCCChHHHHHhhc-CCCccEEEE
Q 013390 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN-LASIDVVSV 250 (444)
Q Consensus 173 ~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~l~~-l~~~~~~~v 250 (444)
+++|++|+++++|++|..++ |+.+++.+. |+.+++|.||++..+.....+..... . . +.... .+....+..
T Consensus 235 ~~~Gg~I~~~~~V~~I~v~~--g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~~~---~-~-~~~~~~~~~~~al~~ 307 (487)
T COG1233 235 REHGGEIRTGAEVSQILVEG--GKGVGVRTSDGENIEADAVVSNADPALLARLLGEAR---R-P-RYRGSYLKSLSALSL 307 (487)
T ss_pred HHcCCEEECCCceEEEEEeC--CcceEEeccccceeccceeEecCchhhhhhhhhhhh---h-h-ccccchhhhhHHHHh
Confidence 99999999999999999998 544445555 55889999999999955555554421 0 0 01111 112233444
Q ss_pred EEEeccCCCCCCCCceeeccCC--Cc--c---------cceee-ccccccccCCCCCeEEEEEEecCC--CCCCCCHHHH
Q 013390 251 KLWFDKKVTVPNVSNACSGFGD--SL--A---------WTFFD-LNKIYDEHKDDSATVIQADFYHAN--ELMPLKDDQV 314 (444)
Q Consensus 251 ~l~~d~~~~~~~~~~~~~g~~~--~~--~---------~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ee~ 314 (444)
++.++........++.++..+. .. . +.+.. .+...+..++.+.+.+...+.... .+.+...+++
T Consensus 308 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~~~~~~~~~~~~~ 387 (487)
T COG1233 308 YLGLKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVPSLGDYDELKESL 387 (487)
T ss_pred ccCCCCCCcchhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCcceeeeeeecCcCCChHHHHHHH
Confidence 4455442110111111111110 00 0 11111 122223334334331111222211 2222233444
Q ss_pred HHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccC--------------CCCCCCCCCC-CCCCCCEEEeecccccCCC
Q 013390 315 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFF--------------PGSYKYMMRG-FTSFPNLFMAGDWITTRHG 379 (444)
Q Consensus 315 ~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~--------------pg~~~~~p~~-~~~~~~l~laGd~~~~~~~ 379 (444)
.+. ...++++.|+++. .++...+. +|...-.+. .+....||.. .++++|||+||++|++|
T Consensus 388 ~~~-~~~~~~~~p~~~~-~iv~~~~~-tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~Ga~t~PG-- 462 (487)
T COG1233 388 ADA-IDALEELAPGLRD-RIVAREVL-TPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVGASTHPG-- 462 (487)
T ss_pred HHH-HHHHhhcCCCccc-ceeEEEEe-ChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEeCCcCCCC--
Confidence 444 5578899999985 45554443 443321110 1112235544 48999999999999753
Q ss_pred cchhhHHHHHHHHHHHHHHHHh
Q 013390 380 SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 380 ~~~~egAv~SG~~aA~~il~~l 401 (444)
+++.++..++..++..+....
T Consensus 463 -~Gv~g~~g~~~a~~~~~~~~~ 483 (487)
T COG1233 463 -GGVPGVPGSAAAVALLIDLDR 483 (487)
T ss_pred -CCcchhhhhHHHHHhhhcccc
Confidence 556667666666666655443
No 33
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.53 E-value=2.6e-11 Score=121.66 Aligned_cols=318 Identities=14% Similarity=0.123 Sum_probs=177.3
Q ss_pred CChhhhhhhhhhHHHHhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHH
Q 013390 65 LPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII 144 (444)
Q Consensus 65 ls~~~kl~~~~l~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~ 144 (444)
|+..+++.+++++.. . .+++|+.|+.||+.++++... ...+|.. ++ +-.+..||..+.++++.++
T Consensus 141 L~~k~r~~Ll~l~l~------~---e~~Ld~~tI~d~f~~~Ff~t~-Fw~~w~t----~F-aF~~whSA~E~rry~~rf~ 205 (576)
T PRK13977 141 LSKKDRKELLKLLLT------P---EEKLDDKTIEDWFSPEFFETN-FWYYWRT----MF-AFEKWHSALEMRRYMHRFI 205 (576)
T ss_pred CCHHHHHHHHHHhcc------C---HHHhCCcCHHHHHhhcCchhH-HHHHHHH----HH-CCchhhHHHHHHHHHHHHH
Confidence 455555556554332 1 346999999999999876442 3334443 33 4568999999999998873
Q ss_pred H---hcCCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCC--CCeEEEEEeC--C--e---EEecCEE
Q 013390 145 L---AHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCCISDVVCG--K--E---TYSAGAV 212 (444)
Q Consensus 145 ~---~~~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~--~g~v~~v~~~--g--~---~~~ad~V 212 (444)
. +-.....+.+.+..+.++|+.+|.+.++++|++|++|++|++|..+.+ .++|++|.+. | + ...+|.|
T Consensus 206 ~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlV 285 (576)
T PRK13977 206 HHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLV 285 (576)
T ss_pred HhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEE
Confidence 1 112233344445666789999999999999999999999999998622 1468887662 2 2 2368999
Q ss_pred EEccChhhHHHhhhccCCCC-------hHH--HHHhhcCC--------------CccEEEEEEEeccC-CC-------CC
Q 013390 213 VLAVGISTLQELIKNSILCN-------REE--FLKVLNLA--------------SIDVVSVKLWFDKK-VT-------VP 261 (444)
Q Consensus 213 I~a~p~~~~~~ll~~~~l~~-------~~~--~~~l~~l~--------------~~~~~~v~l~~d~~-~~-------~~ 261 (444)
|+|+.--.-..-+++..-|+ ..| .++|.+-. -+...+..+-++.+ +. ..
T Consensus 286 ivTnGs~t~ns~~G~~~~p~~~~~~~~~~w~LW~~la~~~~~fG~P~~F~~~~~~s~w~SfTvT~~~~~~~~~i~~~t~~ 365 (576)
T PRK13977 286 FVTNGSITESSTYGDMDTPAPLNRELGGSWTLWKNIAAQSPEFGNPDKFCGDIPESNWESFTVTTKDPKILPYIERITGR 365 (576)
T ss_pred EEeCCcCccccccCCCCCCCCCCCCCCccHHHHHHHHhcCccCCChhhhcCCcccceEEEEEEEcCCHHHHHHHHHHhCC
Confidence 99987543322222210000 011 12221111 01112222222211 11 00
Q ss_pred CCCce------eeccCCCcccceeecc-ccccccCCCCCeEEEEEEe---c-------CCCCCCCCHHHHHHHHHHHHHh
Q 013390 262 NVSNA------CSGFGDSLAWTFFDLN-KIYDEHKDDSATVIQADFY---H-------ANELMPLKDDQVVAKAVSYLSK 324 (444)
Q Consensus 262 ~~~~~------~~g~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~ee~~~~~l~~l~~ 324 (444)
.+..+ +..+ .+++|. .+.+ ..+|.++..+..+..++-| + ...+.+++.+|+.++++-+|.-
T Consensus 366 ~p~~g~~~tg~~vt~-~dS~W~-~s~~v~~QP~F~~Qp~d~~v~WgY~l~~~~~G~yvkKpm~~CtG~Ei~~E~l~Hl~~ 443 (576)
T PRK13977 366 DPGSGKTVTGGIVTF-KDSNWL-MSITVNRQPHFKNQPKNETVVWGYGLYPDRPGNYVKKPMRECTGEEILQELLYHLGV 443 (576)
T ss_pred CCCCCccccCceeEE-ecCCee-EEEEecCCCCCCCCCCCcEEEEEEecccCCCCCccCCchhhCCHHHHHHHHHHhcCC
Confidence 11111 0000 012221 1111 1234454433333333332 1 1356778999999999888732
Q ss_pred h---ccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCC-CCCCCEEEeecccccCCC-cchhhHHHHHHHHHHHHHHH
Q 013390 325 C---IKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHG-SWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 325 ~---~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~-~~~~~l~laGd~~~~~~~-~~~~egAv~SG~~aA~~il~ 399 (444)
. .+.+......-.-+ -.|+....+-|.....||... .+..||-|.|..+.+..- +-++|.+|++|+.|+-.++.
T Consensus 444 ~~~~~~~i~~~~~~~ip~-~MP~ita~f~pR~~gDRP~VvP~g~~Nla~iGqFvE~p~d~vft~eysvRta~~AVy~L~~ 522 (576)
T PRK13977 444 PEDKIEELAADSANTIPV-MMPYITSQFMPRAKGDRPLVVPEGSTNLAFIGQFAETPRDTVFTTEYSVRTAMEAVYTLLG 522 (576)
T ss_pred chhhHHHHHhhcCceEee-ccchhhhhhCCCCCCCCCCcCCCCcceeeeeeccccCCCCEEEEEehhhHHHHHHHHHHhC
Confidence 1 11111000111111 246666666676666778765 356799999999875222 26899999999999988776
Q ss_pred H
Q 013390 400 Y 400 (444)
Q Consensus 400 ~ 400 (444)
-
T Consensus 523 ~ 523 (576)
T PRK13977 523 V 523 (576)
T ss_pred C
Confidence 4
No 34
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.36 E-value=4.4e-11 Score=118.71 Aligned_cols=197 Identities=12% Similarity=0.183 Sum_probs=129.2
Q ss_pred ChhHHHHHHHhCCCCCCCCcc-cceec--cCCccccccccccCCCCCCCccccccccCCCCChhhhhhhhhhHHHHhhcC
Q 013390 8 FRNIFSLVDELGIKPFTGWMK-SAQYS--EEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFD 84 (444)
Q Consensus 8 ~~~~~~Ll~elGl~~~~~~~~-~~~~~--~~G~~~~~~~~~~~~~~p~p~~~~~~~~~~~ls~~~kl~~~~l~~~~~~~~ 84 (444)
.-.+..++.+.|+...+.+.. ...+. .+|+ +.+ + |.+....++.+.+++.+|.++++++..+.++.
T Consensus 83 ~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~------~~~---v--P~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~ 151 (443)
T PTZ00363 83 SGELVKILLHTDVTRYLEFKVIDGSYVYQKEGK------IHK---V--PATDMEALSSPLMGFFEKNRCKNFLQYVSNYD 151 (443)
T ss_pred CChHHHHHhhcCccceeeeEEeceEEEEecCCe------EEE---C--CCCHHHHhhCCCcchhhHHHHHHHHHHHHhhc
Confidence 466778888999987766653 22222 4565 222 2 45555567888999999999988766554443
Q ss_pred C-ChhhHhh--ccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHH--HhcCCCcceeeecCC
Q 013390 85 N-TDVAWRK--YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGT 159 (444)
Q Consensus 85 ~-~~~~~~~--~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~--~~~~~~~~~~~~~gg 159 (444)
. .++.+.. ++++|+.+|+++++++++..+ ++..++......+..+.++...+..+..++ ++.-+...+.||.||
T Consensus 152 ~~~~~~~~~~~~d~~T~~d~L~~~~ls~~~~d-~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~gG 230 (443)
T PTZ00363 152 ENDPETHKGLNLKTMTMAQLYKKFGLEDNTID-FVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYG 230 (443)
T ss_pred cCChhhhcccCcccCCHHHHHHHhCCCHHHHH-HHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCcceeeCCC
Confidence 2 1223333 457999999999999998554 544444333222111223333333332221 122222335678899
Q ss_pred cchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccCh
Q 013390 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI 218 (444)
Q Consensus 160 ~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~ 218 (444)
+++ |++++++.+...|+++++|++|++|..+++ |++++|.+. |+++.|+.||+....
T Consensus 231 ~g~-L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~-g~~~~V~~~~Ge~i~a~~VV~~~s~ 288 (443)
T PTZ00363 231 LGG-LPQAFSRLCAIYGGTYMLNTPVDEVVFDEN-GKVCGVKSEGGEVAKCKLVICDPSY 288 (443)
T ss_pred HHH-HHHHHHHHHHHcCcEEEcCCeEEEEEEcCC-CeEEEEEECCCcEEECCEEEECccc
Confidence 775 999999999999999999999999998764 567778874 889999999995543
No 35
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.91 E-value=6.1e-08 Score=95.32 Aligned_cols=197 Identities=17% Similarity=0.233 Sum_probs=129.7
Q ss_pred ccCCChhHHHHHHHhCCCCCCCCcc-ccee-ccCCccccccccccCCCCCCCccccccccCCCCChhhhhhhhhhHHHHh
Q 013390 4 FWYPFRNIFSLVDELGIKPFTGWMK-SAQY-SEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVI 81 (444)
Q Consensus 4 ~~~~~~~~~~Ll~elGl~~~~~~~~-~~~~-~~~G~~~~~~~~~~~~~~p~p~~~~~~~~~~~ls~~~kl~~~~l~~~~~ 81 (444)
|+-+.-.+.++|-.-|+...+.+.. ...| +.+|+ +.+ + |.+-...++.+.+++.+|.++++++.-+.
T Consensus 80 ll~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~------l~k---V--P~sr~dvf~s~~lsl~eKR~lmkFl~~v~ 148 (438)
T PF00996_consen 80 LLYARGPLVKLLISSGVTRYLEFKAVDGSYVYKNGK------LHK---V--PCSREDVFKSKLLSLFEKRRLMKFLKFVA 148 (438)
T ss_dssp BEETTSHHHHHHHHCTGGGGSEEEEESEEEEEETTE------EEE-------SSHHHHHC-TTS-HHHHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHhCCcccceEEEEcceeEEEeCCE------Eee---C--CCCHHHhhcCCCccHHHHHHHHHHHHHHh
Confidence 4556678889999999987766653 2223 24565 332 3 34444467889999999999998776655
Q ss_pred hcCC-ChhhHhh--ccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChh-hchHHHHHHHHHHHH--HhcCCCcceee
Q 013390 82 DFDN-TDVAWRK--YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAE-QCSAAATLGILYFII--LAHQKNFDLVW 155 (444)
Q Consensus 82 ~~~~-~~~~~~~--~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Sa~~~~~~l~~~~--~~~~~~~~~~~ 155 (444)
.++. ++..++. ..+.|+.+++++.++++... .|+.. ..+++..+.. +-++...+..++.++ ++.-+...+.|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~e~~~~f~L~~~~~-~~i~h-aiaL~~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfLy 226 (438)
T PF00996_consen 149 NYEEDDPSTHKGLDPEKKTFQELLKKFGLSENLI-DFIGH-AIALSLDDSYLTEPAREGLERIKLYLSSLGRYGKSPFLY 226 (438)
T ss_dssp HGCTTBGGGSTTG-TTTSBHHHHHHHTTS-HHHH-HHHHH-HTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEEE
T ss_pred hcccCCcchhhccccccccHHHHHHhcCCCHHHH-HHHHH-hhhhccCcccccccHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 5543 2222332 35789999999999988854 45433 2233332221 234556666666553 23334456778
Q ss_pred ecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEc
Q 013390 156 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA 215 (444)
Q Consensus 156 ~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a 215 (444)
|.-|.++ |++.+.+...=.|+...+|++|.+|..+.+ |++.+|..+|+++.|+.||..
T Consensus 227 P~YG~GE-LpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~-g~~~gV~s~ge~v~~k~vI~d 284 (438)
T PF00996_consen 227 PLYGLGE-LPQAFCRLSAVYGGTYMLNRPIDEIVVDED-GKVIGVKSEGEVVKAKKVIGD 284 (438)
T ss_dssp ETT-TTH-HHHHHHHHHHHTT-EEESS--EEEEEEETT-TEEEEEEETTEEEEESEEEEE
T ss_pred EccCCcc-HHHHHHHHhhhcCcEEEeCCccceeeeecC-CeEEEEecCCEEEEcCEEEEC
Confidence 8888787 999999988778999999999999999766 788888889999999999963
No 36
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.85 E-value=4e-07 Score=89.20 Aligned_cols=313 Identities=14% Similarity=0.089 Sum_probs=169.7
Q ss_pred CCChhhhhhhhhhHHHHhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHH
Q 013390 64 RLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI 143 (444)
Q Consensus 64 ~ls~~~kl~~~~l~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~ 143 (444)
.|+..+++.+++|+.. .+ +.+++.++.||+...++.. +||.. ...+|+ --...||..+-++++++
T Consensus 121 ~Ls~k~r~eL~kL~l~------~E---~~L~~~~I~d~F~~~FF~S----nFW~~-W~T~FA-FqpWhSa~E~rRyl~Rf 185 (500)
T PF06100_consen 121 GLSEKDRMELIKLLLT------PE---EDLGDKRIEDWFSESFFES----NFWYM-WSTMFA-FQPWHSAVEFRRYLHRF 185 (500)
T ss_pred CCCHHHHHHHHHHhcC------CH---HHhCcccHHHhcchhhhcC----chhHh-HHHhhc-cCcchhHHHHHHHHHHH
Confidence 4788888888876542 12 3589999999999876644 46653 333444 45567999999999988
Q ss_pred HHhcCCC----cceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCC--eEEEEEe--CCe--EE---ecC
Q 013390 144 ILAHQKN----FDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC--CISDVVC--GKE--TY---SAG 210 (444)
Q Consensus 144 ~~~~~~~----~~~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g--~v~~v~~--~g~--~~---~ad 210 (444)
+ ..-.+ ..+...+=.+.++++.+|.+.|+++|+++++||.|+.|..+.+++ .++.+.. +|+ ++ .-|
T Consensus 186 ~-h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~D 264 (500)
T PF06100_consen 186 I-HEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDD 264 (500)
T ss_pred H-HhcCCCCCccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCC
Confidence 5 32111 111222234578899999999999999999999999999875422 2333333 232 23 468
Q ss_pred EEEEccChhhHHHhhhccCCC-------ChHH--HHHhhcC--------------CCccE-EEEEEEeccC-CC------
Q 013390 211 AVVLAVGISTLQELIKNSILC-------NREE--FLKVLNL--------------ASIDV-VSVKLWFDKK-VT------ 259 (444)
Q Consensus 211 ~VI~a~p~~~~~~ll~~~~l~-------~~~~--~~~l~~l--------------~~~~~-~~v~l~~d~~-~~------ 259 (444)
.|+++..--.-..-.++..-| ...| .+.|.+- .-+.. .+..+-+..+ +.
T Consensus 265 lV~vT~GS~t~~s~~G~~~~p~~~~~~~~~~W~LW~~la~k~~~FG~P~~F~~~~~~s~w~eSfTvT~~d~~~~~~i~~l 344 (500)
T PF06100_consen 265 LVFVTNGSMTEGSTYGDNDTPPPLNKELGGSWSLWKNLAAKSPDFGNPEKFCTRIPESKWFESFTVTLKDPKFFDYIEKL 344 (500)
T ss_pred EEEEECCccccccccCCCCCCCCCCCCCCchHHHHHHHHhcCcCCCChhhhcCCcccceeEEEEEEEecChHHHHHHHHH
Confidence 888887632222111111000 0111 1222111 11111 2222222222 11
Q ss_pred -CCCCCce------eeccCCCcccceeecc-ccccccCCCCCeEEEEEEe---c-------CCCCCCCCHHHHHHHHHHH
Q 013390 260 -VPNVSNA------CSGFGDSLAWTFFDLN-KIYDEHKDDSATVIQADFY---H-------ANELMPLKDDQVVAKAVSY 321 (444)
Q Consensus 260 -~~~~~~~------~~g~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~ee~~~~~l~~ 321 (444)
...++.. +..+ .+..|. .+.+ ..+|.++..+..+..++-| + ..++.+.+.+|+.++++.+
T Consensus 345 t~~~p~~g~~~tGgliT~-~DS~Wl-mS~~i~~QP~F~~QP~dv~V~WgYgL~pd~~GnyVkKpM~eCtG~EIl~ElL~H 422 (500)
T PF06100_consen 345 TGNDPYSGKVGTGGLITF-KDSNWL-MSITIPRQPHFPDQPEDVQVFWGYGLFPDKEGNYVKKPMLECTGEEILTELLYH 422 (500)
T ss_pred HCCCCCcCccCcCceeEe-ccCCeE-EEEEECCCCccCCCCCCeEEEEEEecccCCCCCccCCchhhCChHHHHHHHHHh
Confidence 0112100 0000 112231 1111 1234454433344334433 1 1356678999999998888
Q ss_pred HHhhccCCCC-C-eeeeEEEEEeCCCccccCCCCCCCCCCCC-CCCCCEEEeecccccCCC-cchhhHHHHHHHHHH
Q 013390 322 LSKCIKDFST-A-TVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHG-SWSQERSYVTGLEAA 394 (444)
Q Consensus 322 l~~~~p~~~~-~-~~~~~~v~r~~~~~~~~~pg~~~~~p~~~-~~~~~l~laGd~~~~~~~-~~~~egAv~SG~~aA 394 (444)
|.---..... + ......-.-.|+....+-|.....||... .+..||-|.|..+....- +-++|.+|++|+.|+
T Consensus 423 Lg~~~~~~~~~~~~~~~tiP~~MP~its~fmpR~~gDRP~VvP~g~~NlafiGQFvE~p~D~vfT~EYSVRtA~~AV 499 (500)
T PF06100_consen 423 LGFPDDEIEELAKQSTNTIPCMMPYITSQFMPRAKGDRPQVVPEGSTNLAFIGQFVEIPRDTVFTVEYSVRTAQEAV 499 (500)
T ss_pred cCCChhhhhHhhccCceEEEeccccchhhccCCCCCCCCCcCCCCcceeEEEEcccccCCCEEEEEeehhhhhhhhc
Confidence 7532111100 0 00011111246666666677666788765 356799999999875222 258999999999885
No 37
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.8e-06 Score=81.49 Aligned_cols=200 Identities=15% Similarity=0.202 Sum_probs=134.2
Q ss_pred ccCCChhHHHHHHHhCCCCCCCCcc--cceeccCCccccccccccCCCCCCCccccccccCCCCChhhhhhhhhhHHHHh
Q 013390 4 FWYPFRNIFSLVDELGIKPFTGWMK--SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVI 81 (444)
Q Consensus 4 ~~~~~~~~~~Ll~elGl~~~~~~~~--~~~~~~~G~~~~~~~~~~~~~~p~p~~~~~~~~~~~ls~~~kl~~~~l~~~~~ 81 (444)
|+-+...+..+|-+.|+...+-+.. ..+.+.+|+ +.+ + |.+-...+.++.+++.+|-++.+++.-+.
T Consensus 80 ~lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k------~~K---V--P~t~~Ea~~s~lmgl~eKrr~~kFl~~V~ 148 (440)
T KOG1439|consen 80 FLMANGELVKILIHTGVTRYLEFKSISGSFVYKKGK------IYK---V--PATEAEALTSPLMGLFEKRRVMKFLKFVL 148 (440)
T ss_pred hhhccchHHHHHHHhchhhheEEEeecceEEEECCe------EEE---C--CCCHHHHhcCCccchhHHHHHHHHHHHHh
Confidence 5567778888999999987666553 233335676 332 3 33444467889999999999888776555
Q ss_pred hcCC-ChhhHhhccC--ccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHH--HhcCCCcceeee
Q 013390 82 DFDN-TDVAWRKYDS--ITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWC 156 (444)
Q Consensus 82 ~~~~-~~~~~~~~d~--~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~--~~~~~~~~~~~~ 156 (444)
.++. +++.|+.++- .|+++++.+.+..++.++ |....+......+.-+.++..++..+..++ ++.-+.+..-||
T Consensus 149 n~~e~~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~-f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~yg~~~ylyP 227 (440)
T KOG1439|consen 149 NYDEEDPKTWQGYDLSKDTMREFLGKFGLLEGTID-FIGHAIALLCDDSYLDQPAKETLERILLYVRSFARYGKSPYLYP 227 (440)
T ss_pred hhhhhccccccccccccchHHHHHHHhccccccee-eeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhcCCCcceec
Confidence 4432 3444555443 399999999988887554 443333333333334445545555444442 122233335688
Q ss_pred cCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccC
Q 013390 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVG 217 (444)
Q Consensus 157 ~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p 217 (444)
..|+++ |.+..++...-.|+...+|.++.+|..+.+ |++.+|..++++..+..||+-..
T Consensus 228 ~yGlgE-L~QgFaRlsAvyGgTYMLn~pi~ei~~~~~-gk~igvk~~~~v~~~k~vi~dpS 286 (440)
T KOG1439|consen 228 LYGLGE-LPQGFARLSAVYGGTYMLNKPIDEINETKN-GKVIGVKSGGEVAKCKKVICDPS 286 (440)
T ss_pred ccCcch-hhHHHHHHhhccCceeecCCceeeeeccCC-ccEEEEecCCceeecceEEecCc
Confidence 999887 999999877667999999999999999655 77877777788888888877543
No 38
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.29 E-value=8.6e-05 Score=72.01 Aligned_cols=117 Identities=21% Similarity=0.208 Sum_probs=78.5
Q ss_pred ccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCCCcceeeecCCcchhhHHHHHHHH
Q 013390 93 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSM 172 (444)
Q Consensus 93 ~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l 172 (444)
+-+.|..+||+++++++.+++.++.+.....|+.+. ++++...+--+. + . ..+..-.+|| ...|.+.|.+
T Consensus 67 ~t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~a~~G~vSla----~-a-~~gl~sV~GG-N~qI~~~ll~-- 136 (368)
T PF07156_consen 67 LTKVTGEEYLKENGISERFINELVQAATRVNYGQNV-NIHAFAGLVSLA----G-A-TGGLWSVEGG-NWQIFEGLLE-- 136 (368)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc-chhhhhhheeee----e-c-cCCceEecCC-HHHHHHHHHH--
Confidence 456799999999999999999999999998888763 455443322221 1 1 1223446787 5557776654
Q ss_pred HhcCcEEEcCceeeEE-EecCCCCe-EEEEEeC---C-eEEecCEEEEccChhhHH
Q 013390 173 RTRGCEFLDGRRVTDF-IYDEERCC-ISDVVCG---K-ETYSAGAVVLAVGISTLQ 222 (444)
Q Consensus 173 ~~~G~~v~~~~~V~~I-~~~~~~g~-v~~v~~~---g-~~~~ad~VI~a~p~~~~~ 222 (444)
+-|.+| +|++|++| ...++ +. ...|... + ..-.+|.||+|+|.+...
T Consensus 137 -~S~A~v-l~~~Vt~I~~~~~~-~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~~ 189 (368)
T PF07156_consen 137 -ASGANV-LNTTVTSITRRSSD-GYSLYEVTYKSSSGTESDEYDIVVIATPLQQSF 189 (368)
T ss_pred -HccCcE-ecceeEEEEeccCC-CceeEEEEEecCCCCccccCCEEEECCCccccc
Confidence 568899 99999999 44443 32 2223332 2 233579999999996543
No 39
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.22 E-value=0.00012 Score=70.83 Aligned_cols=195 Identities=12% Similarity=0.105 Sum_probs=106.7
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhccCCCChHHHHHhhc
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN 241 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~l~~ 241 (444)
..++..+.+.+.+.|++|+.+++|++|..++ +++++|.++++++.||+||+|+.++.-. +.. .++ .+
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~~~v~~~~g~~~a~~vV~a~G~~~~~-l~~-~~~--~~------- 203 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEIRG--EKVTAIVTPSGDVQADQVVLAAGAWAGE-LLP-LPL--RP------- 203 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEeeC--CEEEEEEcCCCEEECCEEEEcCChhhhh-ccc-CCc--cc-------
Confidence 4588888888899999999999999999876 5677788876689999999999997654 333 111 11
Q ss_pred CCCccEEEEEEEeccCCC-C-CCCCceeeccCCCcccceeeccccccccCCCCCeEEEEEEecCCCCCCCCHHHHHHHHH
Q 013390 242 LASIDVVSVKLWFDKKVT-V-PNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAV 319 (444)
Q Consensus 242 l~~~~~~~v~l~~d~~~~-~-~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~l 319 (444)
.+ ...+.+..+.. . ..+..... .+.. .+ +.+ . ..+.++.........+....+++..+.++
T Consensus 204 ~~-----g~~~~~~~~~~~~~~~~~~~~~-~~~~----~y----~~p--~-~~g~~~iG~~~~~~~~~~~~~~~~~~~l~ 266 (337)
T TIGR02352 204 VR-----GQPLRLEAPAVPLLNRPLRAVV-YGRR----VY----IVP--R-RDGRLVVGATMEESGFDTTPTLGGIKELL 266 (337)
T ss_pred cC-----ceEEEeeccccccCCcccceEE-EcCC----EE----EEE--c-CCCeEEEEEeccccCccCCCCHHHHHHHH
Confidence 11 11122222210 0 00100000 0000 01 001 1 23333322222112222233456788899
Q ss_pred HHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCC--CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHH
Q 013390 320 SYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF--TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRV 397 (444)
Q Consensus 320 ~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~--~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~i 397 (444)
+.+.++||.+....+... |-.- ..+++. ..|... ...+|+|+++.+-+ .++--+...|+..|+.|
T Consensus 267 ~~~~~~~P~l~~~~~~~~----~~g~-r~~t~D---~~piig~~~~~~~~~~~~g~~g-----~G~~~~p~~g~~la~~i 333 (337)
T TIGR02352 267 RDAYTILPALKEARLLET----WAGL-RPGTPD---NLPYIGEHPEDRRLLIATGHYR-----NGILLAPATAEVIADLI 333 (337)
T ss_pred HHHHHhCCCcccCcHHHh----eecC-CCCCCC---CCCEeCccCCCCCEEEEccccc-----CceehhhHHHHHHHHHH
Confidence 999999998764333222 2111 111222 223222 13478999986543 23444777899999888
Q ss_pred HH
Q 013390 398 VD 399 (444)
Q Consensus 398 l~ 399 (444)
+.
T Consensus 334 ~~ 335 (337)
T TIGR02352 334 LG 335 (337)
T ss_pred hc
Confidence 64
No 40
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.19 E-value=6.1e-05 Score=73.24 Aligned_cols=63 Identities=24% Similarity=0.282 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhc
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN 227 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ll~~ 227 (444)
..+++.|.+.+++.|++|+.+++|++|..++ ++|++|.++++++.||+||+|+.++... ++..
T Consensus 147 ~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~~g~i~ad~vV~a~G~~s~~-l~~~ 209 (358)
T PF01266_consen 147 RRLIQALAAEAQRAGVEIRTGTEVTSIDVDG--GRVTGVRTSDGEIRADRVVLAAGAWSPQ-LLPL 209 (358)
T ss_dssp HHHHHHHHHHHHHTT-EEEESEEEEEEEEET--TEEEEEEETTEEEEECEEEE--GGGHHH-HHHT
T ss_pred cchhhhhHHHHHHhhhhccccccccchhhcc--cccccccccccccccceeEeccccccee-eeec
Confidence 4588999999999999999999999999998 6688789986669999999999987543 5444
No 41
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.95 E-value=0.0013 Score=65.66 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~ 221 (444)
.++..+.+.+++.|++|+++++|++|+.++ +++++|.+++.++.||+||+|+.++..
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~~~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQTGGGVITADAYVVALGSYST 258 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEeCCcEEeCCEEEECCCcchH
Confidence 477888888888999999999999999876 557667778778999999999998753
No 42
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.65 E-value=0.0081 Score=59.83 Aligned_cols=196 Identities=12% Similarity=0.129 Sum_probs=101.8
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHH--HhhhccCCCChHHHHHhhc
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ--ELIKNSILCNREEFLKVLN 241 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~--~ll~~~~l~~~~~~~~l~~ 241 (444)
+...+++.+.+.|+++..+++|++|..+++ +++++|.+++.++.+++||+++..+... +++... ++..
T Consensus 185 l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~~~v~t~~g~i~a~~vVvaagg~~~~l~~~~g~~-~~~~-------- 254 (407)
T TIGR01373 185 VAWGYARGADRRGVDIIQNCEVTGFIRRDG-GRVIGVETTRGFIGAKKVGVAVAGHSSVVAAMAGFR-LPIE-------- 254 (407)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcEEEEEeCCceEECCEEEECCChhhHHHHHHcCCC-CCcC--------
Confidence 556677778889999999999999986533 4566677775579999999998886532 222111 1100
Q ss_pred CCCccEEEEEEEeccCCCCCCCCceeeccCCCcccceeeccccccccCCCCCeEEEEEEec-CCCCCCCCHHHHHHHHHH
Q 013390 242 LASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH-ANELMPLKDDQVVAKAVS 320 (444)
Q Consensus 242 l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ee~~~~~l~ 320 (444)
.+ ...+....+.....+ ..+.. . .... ++ .+. +++.++...... ........+.+..+.+++
T Consensus 255 -~~----~~~~~~~~~~~~~~~-~~~~~-~-~~~~-y~-----~p~---~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~ 317 (407)
T TIGR01373 255 -SH----PLQALVSEPLKPIID-TVVMS-N-AVHF-YV-----SQS---DKGELVIGGGIDGYNSYAQRGNLPTLEHVLA 317 (407)
T ss_pred -cc----cceEEEecCCCCCcC-CeEEe-C-CCce-EE-----EEc---CCceEEEecCCCCCCccCcCCCHHHHHHHHH
Confidence 01 111111222210000 00100 0 0000 01 011 233333221111 111122234567788899
Q ss_pred HHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCC-CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 321 YLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 321 ~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~-~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.+.+++|.+....+.. .|.. ...++|... |.+- .+.+|+|++..+.+ + ++--|...|+.+|+.|+.
T Consensus 318 ~~~~~~P~l~~~~~~~----~w~G-~~~~t~D~~---PiIg~~~~~gl~~a~G~~g--~---G~~~ap~~G~~la~li~~ 384 (407)
T TIGR01373 318 AILEMFPILSRVRMLR----SWGG-IVDVTPDGS---PIIGKTPLPNLYLNCGWGT--G---GFKATPASGTVFAHTLAR 384 (407)
T ss_pred HHHHhCCCcCCCCeEE----Eecc-ccccCCCCC---ceeCCCCCCCeEEEeccCC--c---chhhchHHHHHHHHHHhC
Confidence 9999999886433322 2422 122233322 3221 23589999986553 2 344477789999988764
No 43
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00063 Score=64.03 Aligned_cols=195 Identities=15% Similarity=0.209 Sum_probs=118.3
Q ss_pred ccCCChhHHHHHHHhCCCCCCCCcc-c-ceeccCCccccccccccCCCCCCCccccccccCCCCChhhhhhhhhhHHHHh
Q 013390 4 FWYPFRNIFSLVDELGIKPFTGWMK-S-AQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVI 81 (444)
Q Consensus 4 ~~~~~~~~~~Ll~elGl~~~~~~~~-~-~~~~~~G~~~~~~~~~~~~~~p~p~~~~~~~~~~~ls~~~kl~~~~l~~~~~ 81 (444)
|+-+...++.+|-+.|+...+-+.. . .++..+|+ +.+ + |-+-...++++.+|..+|-++++++.-+.
T Consensus 81 ~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k------~~k---V--P~ne~ei~~s~~lsL~eKr~vmrFl~~V~ 149 (434)
T COG5044 81 FLFANSELLKILIETGVTEYLEFKQISGSFLYRPGK------IYK---V--PYNEAEIFTSPLLSLFEKRRVMRFLKWVS 149 (434)
T ss_pred hhcccchHHHHHHHhChHhheeeeeccccEEecCCc------EEE---C--CccHHhhhcCCCcchhhHHHHHHHHHHHH
Confidence 4567788899999999986665553 2 33335675 332 3 44545568889999999999888663332
Q ss_pred hcCCChhhHhhcc-CccHHHHHHH-hCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHH--HhcCCCcceeeec
Q 013390 82 DFDNTDVAWRKYD-SITARELFKQ-FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCR 157 (444)
Q Consensus 82 ~~~~~~~~~~~~d-~~s~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~--~~~~~~~~~~~~~ 157 (444)
....+...++++. +.+..+++.+ .+.+.. ...++..-+.-.+ + -+..+...+..+..++ ++.-+.+...||+
T Consensus 150 n~~~~~~~~~~~~e~k~~~~~~~ekf~L~~~-~~e~i~~~i~l~l--d-l~~p~re~~erIl~Y~~Sf~~yg~~pyLyp~ 225 (434)
T COG5044 150 NYAEQKSTLQELYESKDTMEFLFEKFGLSGA-TEEFIGHGIALSL--D-LDIPAREALERILRYMRSFGDYGKSPYLYPR 225 (434)
T ss_pred hHHhhhhhchhhhhcccHHHHHHHHHccCcc-hhhhhhhhhhhhc--c-ccCCchHHHHHHHHHHHhhcccCCCcceeec
Confidence 2221223334433 3556666655 344444 3334432221111 1 3344444444444442 1222234456788
Q ss_pred CCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccC
Q 013390 158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVG 217 (444)
Q Consensus 158 gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p 217 (444)
-|+++ |.+..++...-.|+...+|+++.+|.... . |..|..++.+..|..||....
T Consensus 226 YGl~E-l~QGFaRssav~GgtymLn~~i~ein~tk--~-v~~v~~~~~~~ka~KiI~~~~ 281 (434)
T COG5044 226 YGLGE-LSQGFARSSAVYGGTYMLNQAIDEINETK--D-VETVDKGSLTQKAGKIISSPT 281 (434)
T ss_pred cCchh-hhHHHHHhhhccCceeecCcchhhhcccc--c-eeeeecCcceeecCcccCCcc
Confidence 77787 99999988767799999999999998766 2 444555567888988886543
No 44
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.59 E-value=0.0041 Score=61.36 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhH
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 221 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~ 221 (444)
..++..|.+.+.+ |++|+.+++|++|+.++ +++. |.++ |+++.||+||+|+.++..
T Consensus 135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~--~~~~-v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 135 PQLCRALLAHAGI-RLTLHFNTEITSLERDG--EGWQ-LLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred HHHHHHHHhccCC-CcEEEeCCEEEEEEEcC--CeEE-EEeCCCCEEEcCEEEEcCCcccc
Confidence 3477888888888 99999999999999876 4454 6665 666899999999998864
No 45
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.51 E-value=0.029 Score=55.17 Aligned_cols=55 Identities=24% Similarity=0.348 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
.+...+.+.+++.|++++.+++|++|..++ ++++ |.++++++.+|.||+|+..+.
T Consensus 146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~--~~~~-v~~~~~~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 146 KALRALQELAEAHGATVRDGTKVVEIEPTE--LLVT-VKTTKGSYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEEecC--CeEE-EEeCCCEEEeCEEEEecCcch
Confidence 467778888888999999999999999876 4564 667656799999999999864
No 46
>PRK10015 oxidoreductase; Provisional
Probab=97.43 E-value=0.027 Score=56.51 Aligned_cols=55 Identities=24% Similarity=0.430 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
+-..|.+.+++.|++|+.+++|+.|..++ +++.++.+++++++||.||.|.....
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQAGDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEeCCeEEECCEEEEccCcch
Confidence 33456677778899999999999998776 56776777777899999999998753
No 47
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.38 E-value=0.0069 Score=61.41 Aligned_cols=55 Identities=16% Similarity=0.025 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~ 221 (444)
.++..|++.+++.|++|+.+++|++|+. + +.+ .|.++++++.||+||+|+..+..
T Consensus 184 ~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~--~~~-~v~t~~g~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 184 LLVRGLRRVALELGVEIHENTPMTGLEE-G--QPA-VVRTPDGQVTADKVVLALNAWMA 238 (460)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEee-C--Cce-EEEeCCcEEECCEEEEccccccc
Confidence 4788888888899999999999999984 3 324 46777667999999999987643
No 48
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0031 Score=60.15 Aligned_cols=159 Identities=11% Similarity=0.094 Sum_probs=108.2
Q ss_pred CccccccccCCCCChhhhhhhhhhHHHHhhc--CCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhh
Q 013390 53 PLGTLFYTQFSRLPLVDRLTSLPLMAAVIDF--DNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQ 130 (444)
Q Consensus 53 p~~~~~~~~~~~ls~~~kl~~~~l~~~~~~~--~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (444)
|-+-...++..-|+..+|-.+++++.....+ ...++...++.++++.+||+..+.++. ++.++-. ..++. +..+
T Consensus 178 PcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk~~~~~~~~~e~~F~EyL~~~rltp~-lqs~vl~-aIaM~--~~~~ 253 (547)
T KOG4405|consen 178 PCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEKDPDEYVEFRERPFSEYLKTMRLTPK-LQSIVLH-AIAML--SESQ 253 (547)
T ss_pred CchHHhhhcccchhHHHHHHHHHHHHHHHHhhhccCcHHHHHhhcCcHHHHHHhcCCChh-hHHHHHH-HHHhc--Cccc
Confidence 4444446788889999999888876655444 334566677889999999999999998 4555432 23343 3454
Q ss_pred chHHHHHHHHHHHH--HhcCCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEE-EEeCCeEE
Q 013390 131 CSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD-VVCGKETY 207 (444)
Q Consensus 131 ~Sa~~~~~~l~~~~--~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~-v~~~g~~~ 207 (444)
.++...+.....++ +|+-+..-+.||-=|.++ |.+...+.+.=.|+=--++.+|+.|..+.+..+++. +...|+.+
T Consensus 254 ~tt~eGm~at~~fl~slGrfgntpfLfPlYGqGE-LpQcFCRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri 332 (547)
T KOG4405|consen 254 LTTIEGMDATKNFLTSLGRFGNTPFLFPLYGQGE-LPQCFCRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQRI 332 (547)
T ss_pred ccHHHHHHHHHHHHHHhhccCCCcceeeccCCCc-chHHHHHHHHHhcceEEeccchhheeecccccchhhhHhhhcchh
Confidence 66655555444442 244444556677666666 999999888777888899999999999874222221 22348888
Q ss_pred ecCEEEEcc
Q 013390 208 SAGAVVLAV 216 (444)
Q Consensus 208 ~ad~VI~a~ 216 (444)
.++.+|+.-
T Consensus 333 ~~k~~v~s~ 341 (547)
T KOG4405|consen 333 NAKNFVVSP 341 (547)
T ss_pred cceeeeecC
Confidence 888887753
No 49
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.33 E-value=0.031 Score=52.64 Aligned_cols=55 Identities=24% Similarity=0.224 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (444)
+.+.|.+.+++.|++++++++|++|..++ ++++.... ++++++||.||.|.....
T Consensus 93 l~~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 93 FDEQLAERAQEAGAELRLGTTVLDVEIHD--DRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHcCCEEEeCcEEeeEEEeC--CEEEEEEcCccEEEEeCEEEECCCcch
Confidence 66777777888899999999999999877 44542222 356899999999999864
No 50
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.27 E-value=0.014 Score=58.57 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
+-+.|.+.+++.|++|+.+++|++|..++ +++.++.+++++++||.||.|...+.
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 44556777778899999999999998776 56765666778899999999998754
No 51
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.18 E-value=0.053 Score=54.02 Aligned_cols=57 Identities=21% Similarity=0.207 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-C----eEEecCEEEEccChhhH
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K----ETYSAGAVVLAVGISTL 221 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g----~~~~ad~VI~a~p~~~~ 221 (444)
.++..+.+.+++.|++|+.+++|++|+.++ +.++....+ + .+++||+||+|+.++..
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTDG--GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 466778888889999999999999999766 446522222 2 36899999999999864
No 52
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.12 E-value=0.091 Score=51.59 Aligned_cols=56 Identities=23% Similarity=0.256 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~ 221 (444)
.++..+.+.+.+.|++|+++++|++|..++ +.+. |.+++.++.||+||+|+.++..
T Consensus 150 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~-v~~~~g~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 150 LAIKAHLRLAREAGAELLFNEPVTAIEADG--DGVT-VTTADGTYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEeeC--CeEE-EEeCCCEEEeeEEEEecCcchh
Confidence 356666677778899999999999999876 4454 6776557999999999998754
No 53
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.12 E-value=0.12 Score=51.24 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
+-+-|++..++.|++++.++.|+.+..+++ +.+.++..++.+++|+.||.|..+..
T Consensus 97 fd~~La~~A~~aGae~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 97 FDKWLAERAEEAGAELYPGTRVTGVIREDD-GVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred hhHHHHHHHHHcCCEEEeceEEEEEEEeCC-cEEEEEEcCCEEEEcCEEEECCCcch
Confidence 555678888889999999999999999885 43433333457899999999998754
No 54
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=96.95 E-value=0.0029 Score=62.67 Aligned_cols=64 Identities=22% Similarity=0.280 Sum_probs=45.9
Q ss_pred eeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 013390 153 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI 218 (444)
Q Consensus 153 ~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~ 218 (444)
..||.-.....+++.|.+.+++.|++|+++++|++|..++ +++..|.+ +++++.||+||+|+.-
T Consensus 100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~f~v~~~~~~~~~a~~vILAtGG 164 (409)
T PF03486_consen 100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE--DGVFGVKTKNGGEYEADAVILATGG 164 (409)
T ss_dssp EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET--TEEEEEEETTTEEEEESEEEE----
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC--CceeEeeccCcccccCCEEEEecCC
Confidence 3566554456699999999999999999999999999887 45567888 6889999999999874
No 55
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=96.94 E-value=0.044 Score=51.46 Aligned_cols=61 Identities=23% Similarity=0.324 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEE-eCCeEEecCEEEEccChhhHHHhhh
Q 013390 165 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV-CGKETYSAGAVVLAVGISTLQELIK 226 (444)
Q Consensus 165 ~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~-~~g~~~~ad~VI~a~p~~~~~~ll~ 226 (444)
+..+...++.+|+.++-|..|..+...++.+....|. ++|..+.|+.+|+|+.+|..+ +++
T Consensus 156 lk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k-lL~ 217 (399)
T KOG2820|consen 156 LKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK-LLP 217 (399)
T ss_pred HHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh-hcC
Confidence 4566677788999999999999999655433333344 457889999999999999876 554
No 56
>PRK06847 hypothetical protein; Provisional
Probab=96.84 E-value=0.1 Score=51.16 Aligned_cols=55 Identities=24% Similarity=0.199 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+++.|++|+++++|++|+.++ ++++ |.+ +|+++++|.||.|...+.
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~~-v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDD--DGVT-VTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEEE-EEEcCCCEEEcCEEEECcCCCc
Confidence 366777777778899999999999999876 4465 444 578899999999999864
No 57
>PLN02697 lycopene epsilon cyclase
Probab=96.80 E-value=0.58 Score=48.10 Aligned_cols=55 Identities=13% Similarity=0.226 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (444)
.|.+.|.+.+.+.|+++ +++.|++|..+++ .+..+.+ +|++++|+.||.|..++.
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~--~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASD--GLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCC--cEEEEEEcCCcEEECCEEEECCCcCh
Confidence 36677777777889998 7889999987763 3543444 477899999999999977
No 58
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.70 E-value=0.075 Score=54.74 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChhhH
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGISTL 221 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VI~a~p~~~~ 221 (444)
..++..+++.+.+.|++|.++++|++|..++ +++++|.+ +| .++.|+.||.|+.++.-
T Consensus 128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 128 FRLVAANVLDAQEHGARIFTYTKVTGLIREG--GRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 3477778888889999999999999999876 56766654 24 36899999999999853
No 59
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.67 E-value=0.0061 Score=60.02 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=54.1
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-C--eEEecCEEEEccChhhHHHhhhc
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGISTLQELIKN 227 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g--~~~~ad~VI~a~p~~~~~~ll~~ 227 (444)
.++.+.|.+.+++.|+++..+++|.+|..++ +++++|.++ + ..++||+||+|+..+....|+..
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~--~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~ 329 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEG--NRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAE 329 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeC--CeEEEEEecCCccceEECCEEEEccCCCcCHHHHhh
Confidence 4689999999999999999999999999887 568877755 3 48999999999999977767554
No 60
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=96.55 E-value=0.0045 Score=60.48 Aligned_cols=117 Identities=15% Similarity=0.066 Sum_probs=78.8
Q ss_pred ccHHHHH---HHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCC--CcceeeecCCcchhhHHHHHH
Q 013390 96 ITARELF---KQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK--NFDLVWCRGTLREKIFEPWMD 170 (444)
Q Consensus 96 ~s~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~--~~~~~~~~gg~~~~l~~~l~~ 170 (444)
.++.+|. .+. +++.+.+.|+.|+..-.|+.+|+++++.++.++=..+...... ..-.++|++| .+.+++.|.+
T Consensus 129 ~~~~e~~d~~~~~-~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~G-yt~~~~~ml~ 206 (377)
T TIGR00031 129 EELQEIADPDIQL-LYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGG-YTKLFEKMLD 206 (377)
T ss_pred CCHHHHHHHHHHH-HHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCccccccccccccc-HHHHHHHHHh
Confidence 4556665 664 8999999999999999999999999998775331111000000 1124678999 5557776653
Q ss_pred HHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHH
Q 013390 171 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 223 (444)
Q Consensus 171 ~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ 223 (444)
..+.+|++|+.+..+...+ +++ ..+++.+. +.||.|.|++.+-.
T Consensus 207 ---~~~i~v~l~~~~~~~~~~~--~~~---~~~~~~~~-~~vi~Tg~id~~f~ 250 (377)
T TIGR00031 207 ---HPLIDVKLNCHINLLKDKD--SQL---HFANKAIR-KPVIYTGLIDQLFG 250 (377)
T ss_pred ---cCCCEEEeCCccceeeccc--cce---eecccccc-CcEEEecCchHHHh
Confidence 4578899999888887644 333 23333333 88999999887654
No 61
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.53 E-value=0.16 Score=54.09 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=48.7
Q ss_pred eeecCCc--chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhH
Q 013390 154 VWCRGTL--REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 221 (444)
Q Consensus 154 ~~~~gg~--~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~ 221 (444)
.++.+|+ ...+++.+.+.+++ |++|+.+++|++|..++ ++++ |.++ |..+.||.||+|+..+..
T Consensus 398 ~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~--~~~~-v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 398 FYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERED--DGWQ-LDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred EeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC--CEEE-EEECCCcEEECCEEEECCCCCcc
Confidence 3444543 23477888888888 99999999999999876 5565 6666 556789999999998753
No 62
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.48 E-value=0.2 Score=49.61 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+++.|++|+++++|++|+.++ ++++ |+++ |++++||.||.|...+.
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDA--DRVR-LRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeEE-EEECCCCEEEeCEEEEecCCCc
Confidence 477788888888899999999999999876 4465 5554 77899999999998864
No 63
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=96.43 E-value=0.37 Score=47.40 Aligned_cols=57 Identities=23% Similarity=0.169 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHH
Q 013390 163 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 222 (444)
Q Consensus 163 ~l~~~l~~~l~~~G-~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~ 222 (444)
.++..+++.+++.| ..+..+++|..+..++ +++.|.+++.++.||+||+|+.++.-.
T Consensus 157 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~---~~~~v~t~~g~i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 157 LLTRALAAAAEELGVVIIEGGTPVTSLERDG---RVVGVETDGGTIEADKVVLAAGAWAGE 214 (387)
T ss_pred HHHHHHHHHHHhcCCeEEEccceEEEEEecC---cEEEEEeCCccEEeCEEEEcCchHHHH
Confidence 47788899898999 5677799999999862 245678875559999999999987643
No 64
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=96.41 E-value=0.012 Score=56.57 Aligned_cols=107 Identities=13% Similarity=0.179 Sum_probs=68.7
Q ss_pred CccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHh-cCCCcceeeec-CCcchhhHHHHHHHH
Q 013390 95 SITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA-HQKNFDLVWCR-GTLREKIFEPWMDSM 172 (444)
Q Consensus 95 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~-~~~~~~~~~~~-gg~~~~l~~~l~~~l 172 (444)
.+...+|+.++.-.. .|+.+.+... ++++ +...+...-.. ..+.....+|. .. .+.|++.|.+.+
T Consensus 55 ~~~~~~~ls~~p~~~----~fl~sal~~f---t~~d-----~i~~~e~~Gi~~~e~~~Gr~Fp~sdk-A~~Iv~~ll~~~ 121 (408)
T COG2081 55 SEAPDEFLSRNPGNG----HFLKSALARF---TPED-----FIDWVEGLGIALKEEDLGRMFPDSDK-ASPIVDALLKEL 121 (408)
T ss_pred cccHHHHHHhCCCcc----hHHHHHHHhC---CHHH-----HHHHHHhcCCeeEEccCceecCCccc-hHHHHHHHHHHH
Confidence 345888888754332 3555544432 2332 22222221000 11122234666 33 456999999999
Q ss_pred HhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccC
Q 013390 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVG 217 (444)
Q Consensus 173 ~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p 217 (444)
++.|++|+++++|.+|..++ .... +.++ |++++||.+|+|+.
T Consensus 122 ~~~gV~i~~~~~v~~v~~~~--~~f~-l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 122 EALGVTIRTRSRVSSVEKDD--SGFR-LDTSSGETVKCDSLILATG 164 (408)
T ss_pred HHcCcEEEecceEEeEEecC--ceEE-EEcCCCCEEEccEEEEecC
Confidence 99999999999999999987 3343 6666 56899999999998
No 65
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.37 E-value=0.01 Score=57.86 Aligned_cols=55 Identities=24% Similarity=0.194 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
++..+.+.|+++|++|+++|.|..|+..+ +.+.+|.+. |+++.+|+||+|+.-..
T Consensus 175 vvkni~~~l~~~G~ei~f~t~VeDi~~~~--~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 175 VVKNIREYLESLGGEIRFNTEVEDIEIED--NEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHhcCcEEEeeeEEEEEEecC--CceEEEEccCCcEEecCEEEEccCcch
Confidence 67778888999999999999999999988 446667765 77999999999998654
No 66
>PRK07190 hypothetical protein; Provisional
Probab=96.28 E-value=0.89 Score=46.43 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh-HHHhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~-~~~ll 225 (444)
+-+.|.+.+++.|++|+++++|++|+.+++ +++.+..+|++++|+.||.|..... +.+.+
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~--~v~v~~~~g~~v~a~~vVgADG~~S~vR~~l 171 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQA--GCLTTLSNGERIQSRYVIGADGSRSFVRNHF 171 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--eeEEEECCCcEEEeCEEEECCCCCHHHHHHc
Confidence 445566677788999999999999998874 4653333577899999999999865 34443
No 67
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.23 E-value=0.31 Score=47.95 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhh
Q 013390 163 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 163 ~l~~~l~~~l~~-~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~ll 225 (444)
.+.+.|.+.+.+ .|++++++++|++|..++ ++++ |.+ +|++++||.||.|.+.+. +.+.+
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~-v~~~~g~~~~ad~vV~AdG~~S~vr~~l 168 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYVR-VTLDNGQQLRAKLLIAADGANSKVRELL 168 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeEE-EEECCCCEEEeeEEEEecCCChHHHHHc
Confidence 377788887777 489999999999999776 4465 555 477899999999999864 44444
No 68
>PLN02463 lycopene beta cyclase
Probab=96.19 E-value=1.3 Score=44.58 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
.+-+.|.+.+.+.|++++ ++.|++|+.++ +++. |.++ |++++||.||.|....
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~--~~~~-V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEE--SKSL-VVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcC--CeEE-EEECCCCEEEcCEEEECcCCC
Confidence 366677777777899986 67999999876 4454 6665 6789999999999875
No 69
>PRK06185 hypothetical protein; Provisional
Probab=96.15 E-value=0.45 Score=47.30 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEe---CC-eEEecCEEEEccChhh-HHHhh
Q 013390 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 164 l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~---~g-~~~~ad~VI~a~p~~~-~~~ll 225 (444)
+.+.|.+.+.+. |++++.++.|.++..++ +++++|.+ +| .+++||.||.|...+. +.+.+
T Consensus 110 l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~--~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~ 175 (407)
T PRK06185 110 FLDFLAEEASAYPNFTLRMGAEVTGLIEEG--GRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALA 175 (407)
T ss_pred HHHHHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHc
Confidence 666777766554 78999999999999876 55654543 34 3789999999999864 44444
No 70
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.08 E-value=1.6 Score=42.92 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.+.+.+.+.|++++ ++.|..+..+++ +.+ .|.++ |++++|+.||.|++.+.
T Consensus 86 ~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~-~~~-~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 86 RLHEELLQKCPEGGVLWL-ERKAIHAEADGV-ALS-TVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHhcCcEEE-ccEEEEEEecCC-cee-EEEeCCCCEEEeCEEEECCCCch
Confidence 477778888878888885 668999987742 333 46665 66899999999999875
No 71
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.00 E-value=0.57 Score=46.03 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G-~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+.+.| ++|+.+++|++|..++ ++++ |.+ +|+++++|.||.|...+.
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~-v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHS--DHVE-LTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecC--CeeE-EEECCCCEEEeeEEEEeCCCCC
Confidence 37777888887777 8999999999999876 4565 555 477899999999988764
No 72
>PRK06834 hypothetical protein; Provisional
Probab=95.97 E-value=0.84 Score=46.65 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh-HHHhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~-~~~ll 225 (444)
.+-+.|.+.+++.|++|+.+++|++|+.++ +.|+ |++. |++++||.||.|...+. +.+.+
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v~-v~~~~g~~i~a~~vVgADG~~S~vR~~l 162 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDD--TGVD-VELSDGRTLRAQYLVGCDGGRSLVRKAA 162 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CeEE-EEECCCCEEEeCEEEEecCCCCCcHhhc
Confidence 366677777888899999999999999887 4465 5554 67899999999998864 33443
No 73
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=95.94 E-value=0.42 Score=50.37 Aligned_cols=58 Identities=21% Similarity=0.125 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecC-CCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE-ERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~-~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
..++..+++.+++.|++|+.+++|.+|..++ + |++++|.+ +++ ++.||.||+|+.++.
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~-g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDEST-GRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCC-CcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 3577788888889999999999999998763 2 55766554 343 579999999999985
No 74
>PRK07045 putative monooxygenase; Reviewed
Probab=95.91 E-value=0.93 Score=44.72 Aligned_cols=60 Identities=10% Similarity=0.105 Sum_probs=44.6
Q ss_pred hHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh-HHHh
Q 013390 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST-LQEL 224 (444)
Q Consensus 164 l~~~l~~~l~~-~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~-~~~l 224 (444)
|.+.|.+.+.. .|++++++++|++|+.+++ +.++.|.++ |+++++|.||.|-.... +.+.
T Consensus 108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~ 170 (388)
T PRK07045 108 LRRLLLAKLDGLPNVRLRFETSIERIERDAD-GTVTSVTLSDGERVAPTVLVGADGARSMIRDD 170 (388)
T ss_pred HHHHHHHHHhcCCCeeEEeCCEEEEEEECCC-CcEEEEEeCCCCEEECCEEEECCCCChHHHHH
Confidence 55666666643 4789999999999998764 434446664 77899999999999864 4553
No 75
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.86 E-value=0.64 Score=46.07 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+.+.|++|+.+++|++|+.++ +.+. |++ +|++++||.||.|...+.
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRD--EGVT-VTLSDGSVLEARLLVAADGARS 167 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEE-EEECCCCEEEeCEEEEcCCCCh
Confidence 477888888888899999999999999876 4465 555 477899999999998753
No 76
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=95.80 E-value=2.5 Score=43.41 Aligned_cols=56 Identities=23% Similarity=0.130 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC----C--eEEecCEEEEccChhhH
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGISTL 221 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VI~a~p~~~~ 221 (444)
.++..+++.+.+.|++|+.+++|++|..++ +.+ +|.+. | .++.|+.||.|+.++.-
T Consensus 156 rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~--~~~-~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 156 RLVVLNARDAAERGAEILTRTRVVSARREN--GLW-HVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEE-EEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 466677777788999999999999998775 434 34432 4 36899999999999753
No 77
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=95.80 E-value=0.032 Score=56.80 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHh----cC--cEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 013390 163 KIFEPWMDSMRT----RG--CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (444)
Q Consensus 163 ~l~~~l~~~l~~----~G--~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~ 221 (444)
.++..+.+.+++ .| ++|+++++|++|..+++ + ++.|.++.+++.||.||+|+..+..
T Consensus 212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~-~-~~~V~T~~G~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSND-S-LYKIHTNRGEIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC-C-eEEEEECCCEEEeCEEEECcChhHH
Confidence 478888888888 77 68999999999998753 3 5557777667999999999998764
No 78
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.78 E-value=2.8 Score=43.06 Aligned_cols=56 Identities=20% Similarity=0.080 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-C----eEEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K----ETYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g----~~~~ad~VI~a~p~~~ 220 (444)
..+...+++..++.|++|+.+++|++|..++ +.+ .|.+. + .++.|+.||.|+.++.
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~--~~~-~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREG--GLW-RVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcC--CEE-EEEEEeCCCCEEEEEecEEEECCCccH
Confidence 3466677777888999999999999999876 434 35442 2 3589999999999975
No 79
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.77 E-value=0.05 Score=53.12 Aligned_cols=63 Identities=21% Similarity=0.341 Sum_probs=49.2
Q ss_pred eeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC--CeEEecCEEEEccChhh
Q 013390 153 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIST 220 (444)
Q Consensus 153 ~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~--g~~~~ad~VI~a~p~~~ 220 (444)
..||.-...+.+++.|.+.+++.|++|+++++|++| ++ +++ .+.+. +++++||+||+|+.-..
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~~-~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GTL-RFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--CcE-EEEECCCceEEecCEEEEcCCCcc
Confidence 356755556779999999999999999999999999 33 334 35653 35799999999998643
No 80
>PRK06184 hypothetical protein; Provisional
Probab=95.74 E-value=1.7 Score=44.69 Aligned_cols=60 Identities=20% Similarity=0.192 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEE---eCCeEEecCEEEEccChhh-HHHhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV---CGKETYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~---~~g~~~~ad~VI~a~p~~~-~~~ll 225 (444)
+-+.|.+.+.+.|++|+++++|.+|+.+++ .|+... .++++++||.||.|...+. +.+.+
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~--~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~l 174 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDAD--GVTARVAGPAGEETVRARYLVGADGGRSFVRKAL 174 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCC--cEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhC
Confidence 555677777788999999999999998774 465322 1256899999999999875 34444
No 81
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=95.71 E-value=0.042 Score=55.20 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC--CeEEecCEEEEccCh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGI 218 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~--g~~~~ad~VI~a~p~ 218 (444)
..+++.|.+.+++.|++|+++++|++|..+.++++|++|... +.++.|+.||+|+..
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGG 181 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCC
Confidence 458999999999999999999999999876311667777653 357899999999984
No 82
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.69 E-value=1 Score=44.77 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
+.+.|.+.+++.|++|+.+++|.+|+.++ +.++ |.+ +|++++||.||.|...+. +.+++.
T Consensus 114 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~g~~~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 114 VQDALLERLHDSDIGLLANARLEQMRRSG--DDWL-LTLADGRQLRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred HHHHHHHHHhcCCCEEEcCCEEEEEEEcC--CeEE-EEECCCCEEEeCEEEEecCCCchhHHhcC
Confidence 66677777777899999999999999876 3465 555 477899999999999864 455554
No 83
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=95.69 E-value=0.037 Score=54.70 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeE-EecCEEEEccChhhH
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KET-YSAGAVVLAVGISTL 221 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~-~~ad~VI~a~p~~~~ 221 (444)
.++.++++.+++.|++|++|++|+.|+.+++ | ++.+.+. |++ ++|+.||.+.+....
T Consensus 154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d-g-~~~~~~~~g~~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 154 ELTRALAEEAQANGVELRLNTEVTGIEKQSD-G-VFVLNTSNGEETLEAKFVINAAGLYAD 212 (429)
T ss_pred HHHHHHHHHHHHcCCEEEecCeeeEEEEeCC-c-eEEEEecCCcEEEEeeEEEECCchhHH
Confidence 3778889999999999999999999999885 4 5555665 655 999999999998653
No 84
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.58 E-value=1.1 Score=44.20 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhhh
Q 013390 163 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 163 ~l~~~l~~~l~~~G-~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
.|.+.|.+.+.+.+ +++++++.|+.|+.+++ .|+.+.. +|++++||.||-|=..+. +.+.+.
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~--~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGD--GVTVTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC--ceEEEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 47788888887776 79999999999999884 4763334 578899999999988764 455555
No 85
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.50 E-value=3.1 Score=42.46 Aligned_cols=57 Identities=23% Similarity=0.173 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC----Ce--EEecCEEEEccChhhHH
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTLQ 222 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VI~a~p~~~~~ 222 (444)
+|+-..++.....|.+|.+.++|+++..++ | |++|.+. |+ ++.|+.||-|+.||.-.
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~--~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRREG--G-VWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeeecC--C-EEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 466666777778999999999999999987 6 8888764 33 47899999999999754
No 86
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.44 E-value=0.57 Score=46.23 Aligned_cols=55 Identities=18% Similarity=-0.016 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+.+.++..+++++|.+|+.++ +.++ |+++ |++++||.||.|...+.
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~--~~~~-v~~~~g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPRE--DEVT-VTLADGTTLSARLVVGADGRNS 167 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcC--CeEE-EEECCCCEEEEeEEEEecCCCc
Confidence 367777777777765558999999999876 4465 5554 77899999999999864
No 87
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.43 E-value=0.033 Score=49.40 Aligned_cols=52 Identities=25% Similarity=0.222 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccCh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI 218 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~ 218 (444)
+.+.+.+.+++.+.+|++++.|++|..+++ ++. |.+. +++++||+||+|+..
T Consensus 84 v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~--~w~-v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 84 VLDYLQEYAERFGLEIRFNTRVESVRRDGD--GWT-VTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHHHHTTGGEETS--EEEEEEETT--TEE-EEETTS-EEEEEEEEE---S
T ss_pred HHHHHHHHHhhcCcccccCCEEEEEEEecc--EEE-EEEEecceeeeeeEEEeeec
Confidence 677887778888999999999999999984 454 7776 568999999999995
No 88
>PRK07588 hypothetical protein; Provisional
Probab=95.37 E-value=1 Score=44.52 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQEL 224 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~l 224 (444)
|.+.|.+.+. .|++|+++++|++|+.++ ++|+ |.+ +|+++++|.||-|-..+. +.+.
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~~d~vIgADG~~S~vR~~ 163 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHR--DGVR-VTFERGTPRDFDLVIGADGLHSHVRRL 163 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECC--CeEE-EEECCCCEEEeCEEEECCCCCccchhh
Confidence 5555555543 378999999999999876 4575 555 477889999999999864 4443
No 89
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.31 E-value=0.065 Score=54.42 Aligned_cols=56 Identities=27% Similarity=0.245 Sum_probs=46.6
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC---C--eEEecCEEEEccCh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGI 218 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~---g--~~~~ad~VI~a~p~ 218 (444)
+..++..|.+.+++.|++|+++++|++|..++ ++|++|.+. + ..+.|+.||+|+..
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~--g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALELDD--GRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 34588999999999999999999999999865 678877662 2 46789999999975
No 90
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.20 E-value=0.063 Score=53.19 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
..+.+.|.+.+++.|++|+++++|.+|..++ +++ .|.++++++.||.||+|++.+.
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~--~~~-~V~~~~g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHA--NGV-VVRTTQGEYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecC--CeE-EEEECCCEEEeCEEEECCCcch
Confidence 4588888888889999999999999998776 445 4667755799999999999875
No 91
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.17 E-value=0.76 Score=44.29 Aligned_cols=62 Identities=24% Similarity=0.292 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC---C--eEEecCEEEEccChhh-HHHhhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~---g--~~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
.+-+.|.+.+++.|++|+.++.|.++..+++ +++.+... | ++++||.||-|-..+. +.+.+.
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~--~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~ 179 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDD--GVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLG 179 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETT--EEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred HHHHhhhhhhhhhhhhheeeeeccccccccc--ccccccccccCCceeEEEEeeeecccCcccchhhhcc
Confidence 3667778888888999999999999998874 45533332 3 3689999999999875 444443
No 92
>PRK08244 hypothetical protein; Provisional
Probab=95.13 E-value=3.3 Score=42.36 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe---CC-eEEecCEEEEccChhh-HHHhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~---~g-~~~~ad~VI~a~p~~~-~~~ll 225 (444)
+-+.|.+.+++.|++|+++++|++|+.++ ++|+ +.+ +| ++++||.||.|-..+. +.+.+
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~~~g~~~i~a~~vVgADG~~S~vR~~l 165 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDG--DGVE-VVVRGPDGLRTLTSSYVVGADGAGSIVRKQA 165 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcC--CeEE-EEEEeCCccEEEEeCEEEECCCCChHHHHhc
Confidence 55566666777899999999999999877 3465 333 24 4789999999998864 44444
No 93
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=95.08 E-value=1.3 Score=43.68 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh-HHHhh
Q 013390 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 164 l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~-~~~ll 225 (444)
+-+.|.+.+++. |++|+.++.|++|..++ +++. |.++ |++++||.||.|...+. +.+.+
T Consensus 114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~-v~~~~g~~~~a~~vI~AdG~~S~vR~~~ 175 (391)
T PRK08020 114 LQLALWQALEAHPNVTLRCPASLQALQRDD--DGWE-LTLADGEEIQAKLVIGADGANSQVRQMA 175 (391)
T ss_pred HHHHHHHHHHcCCCcEEEcCCeeEEEEEcC--CeEE-EEECCCCEEEeCEEEEeCCCCchhHHHc
Confidence 556677766666 89999999999998776 4454 5554 67899999999999865 34444
No 94
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=94.99 E-value=0.098 Score=51.98 Aligned_cols=63 Identities=19% Similarity=0.318 Sum_probs=49.5
Q ss_pred eecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 155 ~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
+|.......+.+.+.+.+++.|++|+++++|++|..++ +.+ .|.++++++.+|.||+|++...
T Consensus 98 ~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~-~v~~~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 98 FPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD--NGF-GVETSGGEYEADKVILATGGLS 160 (400)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--CeE-EEEECCcEEEcCEEEECCCCcc
Confidence 44333345688999999999999999999999998765 434 4667777899999999999743
No 95
>PRK09126 hypothetical protein; Provisional
Probab=94.74 E-value=1.8 Score=42.67 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=42.4
Q ss_pred hHHHHHHHHH-hcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhh
Q 013390 164 IFEPWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 164 l~~~l~~~l~-~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~ll 225 (444)
+.+.+.+.+. ..|++|+.+++|++++.++ +.++ |.+ +|++++||.||.|.+... +.+.+
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~--~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~ 173 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDD--DGAQ-VTLANGRRLTARLLVAADSRFSATRRQL 173 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcC--CeEE-EEEcCCCEEEeCEEEEeCCCCchhhHhc
Confidence 4445555543 4589999999999998776 4454 554 477899999999999853 44444
No 96
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=94.71 E-value=0.09 Score=52.51 Aligned_cols=59 Identities=27% Similarity=0.309 Sum_probs=46.0
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC----Ce--EEecCEEEEccChhhH
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTL 221 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VI~a~p~~~~ 221 (444)
...+++.+.+.+++.|++|+++++|++|..++ ++|++|... |+ ++.|++||+|+.-...
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~--g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITED--GRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEET--TEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeC--CceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 34589999999999999999999999999986 789888653 44 5789999999987543
No 97
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=94.70 E-value=0.11 Score=53.86 Aligned_cols=56 Identities=23% Similarity=0.234 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VI~a~p~~~ 220 (444)
.++..+++.+.+.|++|+++++|++|..++ ++|++|.+ .+ .++.||.||.|+.++.
T Consensus 150 rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 150 RLTAANMLDAKEHGAQILTYHEVTGLIREG--DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHhCCCEEEeccEEEEEEEcC--CeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 466677777788999999999999999876 56777664 23 4789999999999985
No 98
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=94.69 E-value=5.3 Score=41.39 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEe---CC--eEEecCEEEEccChhh-HHHhh
Q 013390 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 164 l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~---~g--~~~~ad~VI~a~p~~~-~~~ll 225 (444)
+-+.|.+.+.+. |++|+++++|++|+.+++ +|+ |++ +| .+++||.||-|-..+. +.+.+
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~--~v~-v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~l 180 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDD--GVT-VTLTDADGQRETVRARYVVGCDGANSFVRRTL 180 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCC--eEE-EEEEcCCCCEEEEEEEEEEecCCCchhHHHHc
Confidence 334555555554 899999999999998874 465 443 35 4789999999999865 44555
No 99
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.65 E-value=2.9 Score=41.24 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=40.5
Q ss_pred hHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~-~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
+-+.|.+.+.+ .|++|+++++|++|..++ +++. |.+. |.++.+|.||.|...+.
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~--~~~~-v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQ--GSVR-VTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcC--CeEE-EEECCCCEEEeCEEEEecCCCh
Confidence 44455555555 478999999999998766 4465 5554 66899999999999864
No 100
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=94.47 E-value=3 Score=41.36 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhhh
Q 013390 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 164 l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
+-+.|.+.+.+. |++|+++++|++|+.++ +.++ |.+ +|++++||.||.|-..+. +.+.+.
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~~~-v~~~~g~~~~a~lvIgADG~~S~vR~~~~ 175 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGE--SEAW-LTLDNGQALTAKLVVGADGANSWLRRQMD 175 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeC--CeEE-EEECCCCEEEeCEEEEeCCCCChhHHHcC
Confidence 445666666554 68999999999998876 3465 555 478899999999999854 445443
No 101
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=94.45 E-value=3.1 Score=40.96 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh-HHHhh
Q 013390 163 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 163 ~l~~~l~~~l~~~G-~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~-~~~ll 225 (444)
.+.+.|.+.+++.| ++++ ++.|++|..++ +.+. |.++ |++++||.||.|...+. +.+.+
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~~-v~~~~g~~~~a~~vI~adG~~S~vr~~~ 173 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDP--DAAT-LTLADGQVLRADLVVGADGAHSWVRSQA 173 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecC--CeEE-EEECCCCEEEeeEEEEeCCCCchHHHhc
Confidence 36777878887777 8888 99999998776 4465 5554 66899999999999863 44443
No 102
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=94.38 E-value=0.14 Score=53.43 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEec-CEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~g~--~~~a-d~VI~a~p~~~ 220 (444)
..++..|.+.+++.|++|+++++|++|..++ |+|++|.. +++ ++.| +.||+|+....
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~--g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRED--GRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 4588899999999999999999999998875 67877755 333 4788 99999998764
No 103
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=94.24 E-value=0.2 Score=47.84 Aligned_cols=99 Identities=17% Similarity=0.131 Sum_probs=68.3
Q ss_pred hhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcC---CCcceeeecCCcchhhHHH
Q 013390 91 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ---KNFDLVWCRGTLREKIFEP 167 (444)
Q Consensus 91 ~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~---~~~~~~~~~gg~~~~l~~~ 167 (444)
+.+++.|+++|+..+++.. +||-.+. .++ +--...|+..+.+++-+++..-. .-..+.+-+=.++++++.+
T Consensus 159 E~L~~~tI~d~Fse~FF~s----NFW~yW~-tmF-AFekWhSa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYeSlvlP 232 (587)
T COG4716 159 EKLDDLTIEDWFSEDFFKS----NFWYYWQ-TMF-AFEKWHSAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYESLVLP 232 (587)
T ss_pred HhcCCccHHHhhhHhhhhh----hHHHHHH-HHH-hhhHHHHHHHHHHHHHHHHHHhcCCCcchhhcccccchHHHHHHH
Confidence 4699999999999987644 4554322 222 33556788888777766642211 1122233333457889999
Q ss_pred HHHHHHhcCcEEEcCceeeEEEecCCCC
Q 013390 168 WMDSMRTRGCEFLDGRRVTDFIYDEERC 195 (444)
Q Consensus 168 l~~~l~~~G~~v~~~~~V~~I~~~~~~g 195 (444)
|...|+++|+++.+++.|..|..+...|
T Consensus 233 li~yL~~H~Vdf~~~~~Vedi~v~~t~g 260 (587)
T COG4716 233 LITYLKSHGVDFTYDQKVEDIDVDDTPG 260 (587)
T ss_pred HHHHHHHcCCceEeccEEeeeeeccCcc
Confidence 9999999999999999999999876434
No 104
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.16 E-value=0.14 Score=53.48 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC--Ce--EEecC-EEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~--g~--~~~ad-~VI~a~p~~~ 220 (444)
..++..|.+.+++.|++|+++++|++|..+++ |+|++|... ++ .+.|+ .||+|+.--.
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~-g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPD-GAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCC-CcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 45888888888899999999999999998754 789888663 43 46787 6999997543
No 105
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=94.13 E-value=0.2 Score=51.04 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEE---eC-C--eEEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV---CG-K--ETYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~---~~-g--~~~~ad~VI~a~p~~~ 220 (444)
..++..+.+.+++.|++|+++++|++|+.+++ +.+. |. ++ | .+++||+||+|+..+.
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~-~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD-GSWT-VTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CeEE-EEEeeccCCceEEEECCEEEECCCcch
Confidence 34888888888889999999999999998653 4343 33 22 3 3689999999999875
No 106
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.12 E-value=4.3 Score=40.37 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEeC--C--eEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~~--g--~~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+.+. |++|+++++|++|+.++ +.+. |++. + .+++||.||.|-..+.
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~~~-v~~~~~~~~~~i~adlvIgADG~~S 181 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQ--DAAT-VTLEIEGKQQTLQSKLVVAADGARS 181 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeeE-EEEccCCcceEEeeeEEEEeCCCCc
Confidence 3667777766664 68999999999998876 3454 4442 3 3689999999999864
No 107
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=94.02 E-value=0.24 Score=51.60 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=47.6
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
+..|+..|.+.+++.|++|..+++|++|..++ |+|.++.. +|+ .+.|++||+|+.-..
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~--g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMED--GECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC--CEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 34589999998888999999999999999865 78888764 243 578999999998743
No 108
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=93.95 E-value=0.21 Score=49.80 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CC--eEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g--~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|++|++++.|.+++.++ +++..+.+ ++ ..++||.||+|+...
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 488899999999999999999999999876 55765544 34 358999999999864
No 109
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=93.93 E-value=7 Score=38.41 Aligned_cols=55 Identities=25% Similarity=0.186 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~~ 221 (444)
.+-+.+.+.+. .++.+++++.|++|+.+++ .+. |.+ +|++++|+.||-|.++...
T Consensus 88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~--~~~-v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 88 DFYEFLLERAA-AGGVIRLNARVTSIEETGD--GVL-VVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred HHHHHHHHHhh-hCCeEEEccEEEEEEecCc--eEE-EEECCCCEEEeeEEEECCCcccc
Confidence 36667777776 5678899999999998873 343 455 4789999999999986443
No 110
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=93.83 E-value=0.2 Score=52.09 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecC-EEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~g~--~~~ad-~VI~a~p~~~ 220 (444)
..|+..|.+.+++.|++|+++++|++|..++ |+|++|.. +|+ .+.|+ .||+|+.--.
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~ 269 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVED--GRVVGVVVVRDGREVLIRARRGVLLASGGFG 269 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence 4589999999999999999999999999875 78888876 343 46784 7999998643
No 111
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=93.79 E-value=0.19 Score=52.19 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC--Ce--EEec-CEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~--g~--~~~a-d~VI~a~p~~~ 220 (444)
..|+.+|.+.+++.|++|+++++|++|..++ |+|++|... ++ .+.| +.||+|+.-..
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~ 278 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTDDG--GRVTGAVVDHRGREVTVTARRGVVLAAGGFD 278 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEecC--CEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence 4599999999999999999999999998754 788888653 43 3456 58999998643
No 112
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=93.73 E-value=0.2 Score=51.44 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--C-C--eEEecCEEEEccCh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G-K--ETYSAGAVVLAVGI 218 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~-g--~~~~ad~VI~a~p~ 218 (444)
.+++.|.+.+++.|++|+++++|++|..++ |+|++|.+ . + .++.|+.||+|+..
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~--g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG 249 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKD--GKVTGVKVKINGKETKTISSKAVVVTTGG 249 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecC--CEEEEEEEEeCCCeEEEEecCeEEEeCCC
Confidence 488899999999999999999999998765 67877765 2 2 35889999999974
No 113
>PRK07121 hypothetical protein; Validated
Probab=93.71 E-value=0.23 Score=50.87 Aligned_cols=59 Identities=24% Similarity=0.288 Sum_probs=47.7
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC--Ce--EEec-CEEEEccChhh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGIST 220 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~--g~--~~~a-d~VI~a~p~~~ 220 (444)
+..+.+.|.+.+++.|++|+++++|++|..+++ |+|++|... ++ ++.| +.||+|+....
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDD-GRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCC-CCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 345889999999999999999999999998754 678887653 32 5788 99999998644
No 114
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=93.63 E-value=0.24 Score=45.85 Aligned_cols=57 Identities=26% Similarity=0.278 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC------------CeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------KETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~------------g~~~~ad~VI~a~p~~~ 220 (444)
.+...|.+.+.+.|++|++++.|.+|..+++ ++|.++.++ ..+++|+.||.|+..+.
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~-g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILRED-PRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCC-CcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 4778888888889999999999999988663 467766542 14689999999998654
No 115
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=93.62 E-value=0.26 Score=50.36 Aligned_cols=58 Identities=21% Similarity=0.253 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEE--eC-Ce--EEecCEEEEccChhhH
Q 013390 163 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVV--CG-KE--TYSAGAVVLAVGISTL 221 (444)
Q Consensus 163 ~l~~~l~~~l~~~G-~~v~~~~~V~~I~~~~~~g~v~~v~--~~-g~--~~~ad~VI~a~p~~~~ 221 (444)
.+.+.|.+.+++.| ++|+++++|++|..+++ +.+.... ++ |+ +++|++||++.+.+..
T Consensus 184 ~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 184 ALTRQLVGYLQKQGNFELQLGHEVRDIKRNDD-GSWTVTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCEEEEEEECCC-CCEEEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 48888888888887 69999999999998664 4344222 22 43 6899999999999763
No 116
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=93.59 E-value=0.17 Score=49.72 Aligned_cols=56 Identities=25% Similarity=0.299 Sum_probs=44.0
Q ss_pred CcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCe-EEecCEEEEccChhh
Q 013390 159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE-TYSAGAVVLAVGIST 220 (444)
Q Consensus 159 g~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~-~~~ad~VI~a~p~~~ 220 (444)
.+...+.+...+.|+++|++|++|++|++|+.++ |+ ..+|+ ++.++.||.|+....
T Consensus 206 ~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~--~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 206 MFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VT--LKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc----EE--EccCCeeEecCEEEEcCCCcC
Confidence 3456688888899999999999999999998542 43 22355 599999999998743
No 117
>PRK08013 oxidoreductase; Provisional
Probab=93.54 E-value=6.9 Score=38.76 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhh
Q 013390 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 164 l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~ll 225 (444)
|-+.|.+.+.+. |++|++++.|.+|+.+++ .|+ |.+ +|++++||.||-|-..+. +.+.+
T Consensus 113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~--~v~-v~~~~g~~i~a~lvVgADG~~S~vR~~~ 174 (400)
T PRK08013 113 IHYALWQKAQQSSDITLLAPAELQQVAWGEN--EAF-LTLKDGSMLTARLVVGADGANSWLRNKA 174 (400)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCC--eEE-EEEcCCCEEEeeEEEEeCCCCcHHHHHc
Confidence 556666666665 789999999999988763 365 444 578899999999999864 44444
No 118
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=93.38 E-value=0.22 Score=50.18 Aligned_cols=57 Identities=28% Similarity=0.317 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--C-Ce--EEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G-KE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~-g~--~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+++.|++|+++++|++|..+++ ++|++|.+ . ++ .+.++.||+|+....
T Consensus 131 ~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 131 EIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQ-GTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEeeEeEECCC-CcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 4888999999999999999999999998654 56776654 2 33 468999999998654
No 119
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=93.30 E-value=0.25 Score=51.69 Aligned_cols=57 Identities=25% Similarity=0.271 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC--Ce--EEec-CEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~--g~--~~~a-d~VI~a~p~~~ 220 (444)
..+++.|.+.+++.|++|+++++|.+|..++ ++|++|.+. ++ ++.| +.||+|+....
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~ 282 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDH--GRVIGATVVQGGVRRRIRARGGVVLATGGFN 282 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEecCCeEEEEEccceEEECCCCcc
Confidence 4588999999999999999999999998765 678887663 43 4676 68999998654
No 120
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.21 E-value=0.38 Score=50.51 Aligned_cols=59 Identities=24% Similarity=0.244 Sum_probs=47.5
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
+..++..|.+.+++.|++|.++++|++|..+++ |+|.+|.. +|+ .+.|++||+|+.-..
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDG-GVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 345888999888888999999999999998654 67888764 243 678999999998643
No 121
>PRK06996 hypothetical protein; Provisional
Probab=93.04 E-value=9.7 Score=37.69 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-C---eEEecCEEEEccCh--hhHHHhhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K---ETYSAGAVVLAVGI--STLQELIK 226 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g---~~~~ad~VI~a~p~--~~~~~ll~ 226 (444)
.+-+.|.+.+++.|+++++++.|++|+.+++ .|+ +..+ + ++++||.||-|-.. ....+.+.
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~--~v~-v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~ 182 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDAD--GVT-LALGTPQGARTLRARIAVQAEGGLFHDQKADAG 182 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCC--eEE-EEECCCCcceEEeeeEEEECCCCCchHHHHHcC
Confidence 3677888888888999999999999987763 365 4443 2 58999999999774 34445443
No 122
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=93.04 E-value=0.33 Score=50.47 Aligned_cols=57 Identities=19% Similarity=0.196 Sum_probs=45.3
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecC-EEEEccChh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~g~--~~~ad-~VI~a~p~~ 219 (444)
+..+...|.+.+++.|++|+++++|++|..++ ++|++|.. +++ .+.|+ .||+|+.--
T Consensus 207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~--g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~ 268 (557)
T PRK07843 207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVED--GRVTGVHAAESGEPQLIRARRGVILASGGF 268 (557)
T ss_pred cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC--CEEEEEEEEeCCcEEEEEeceeEEEccCCc
Confidence 34588889888999999999999999999875 67887765 343 47786 699988753
No 123
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=93.01 E-value=10 Score=37.46 Aligned_cols=61 Identities=10% Similarity=-0.064 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccChhh-HHHhhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
+.+.|.+...+.|++++++++|++|+..++ ..+. |+. +|+ +++||.||-|-..+. +.+.+.
T Consensus 105 l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~-~~~~-V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~ 170 (392)
T PRK08243 105 VTRDLMAARLAAGGPIRFEASDVALHDFDS-DRPY-VTYEKDGEEHRLDCDFIAGCDGFHGVSRASIP 170 (392)
T ss_pred HHHHHHHHHHhCCCeEEEeeeEEEEEecCC-CceE-EEEEcCCeEEEEEeCEEEECCCCCCchhhhcC
Confidence 566676666778999999999999986222 2343 443 453 689999999988864 445443
No 124
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.00 E-value=0.44 Score=49.72 Aligned_cols=59 Identities=19% Similarity=0.290 Sum_probs=47.8
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
+..|...|.+.+.+.|++|..+++++++..+++ |+|.+|.. +|+ .+.|++||+|+.-..
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD-GAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCC-CeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 345889999888888999999999999998644 78888865 243 568999999998744
No 125
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=92.95 E-value=9.3 Score=40.50 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=34.7
Q ss_pred EEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhh
Q 013390 178 EFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 178 ~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~ll 225 (444)
.++++++|++|+.++ ++|+ |++ +|+++++|.||.|-..+. +.+.+
T Consensus 208 ~i~~g~~V~~I~~~~--d~Vt-V~~~dG~ti~aDlVVGADG~~S~vR~~l 254 (668)
T PLN02927 208 VIRNESNVVDFEDSG--DKVT-VVLENGQRYEGDLLVGADGIWSKVRNNL 254 (668)
T ss_pred EEEcCCEEEEEEEeC--CEEE-EEECCCCEEEcCEEEECCCCCcHHHHHh
Confidence 478999999999876 4576 555 577899999999999875 33433
No 126
>PRK08401 L-aspartate oxidase; Provisional
Probab=92.89 E-value=0.36 Score=49.06 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
..+.+.|.+.+++.|+++..+ .|+.|..++ ++|.+|.++++.+.|+.||+|+....
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFLDGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEECCEEEEeCeEEECCCcCc
Confidence 458899999998899999876 788888755 67888888888899999999998754
No 127
>PRK06175 L-aspartate oxidase; Provisional
Probab=92.78 E-value=0.4 Score=48.18 Aligned_cols=55 Identities=13% Similarity=0.299 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccCh
Q 013390 162 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGI 218 (444)
Q Consensus 162 ~~l~~~l~~~l~~-~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VI~a~p~ 218 (444)
..+++.|.+.+++ .|++|+++++|++|..++ ++|.+|.. +++ ++.|+.||+|+..
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~--~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIEND--NTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecC--CEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 4588888887765 489999999999998765 66777542 343 5799999999986
No 128
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.68 E-value=0.51 Score=49.42 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=47.4
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
+..|+..|.+.+.+.|++|.+++.|+++..+++ |+|.+|.. +|+ .+.|++||+|+....
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 355888998888888999999999999998644 78888864 243 568999999998754
No 129
>PRK06116 glutathione reductase; Validated
Probab=92.66 E-value=0.39 Score=48.53 Aligned_cols=56 Identities=14% Similarity=0.251 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|++++.|++|+.+++ +.+. +.+ +|+++.+|.||+++...
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-g~~~-v~~~~g~~i~~D~Vv~a~G~~ 264 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNAD-GSLT-LTLEDGETLTVDCLIWAIGRE 264 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCC-ceEE-EEEcCCcEEEeCEEEEeeCCC
Confidence 34677788889999999999999999987653 4354 444 47789999999998653
No 130
>PRK06126 hypothetical protein; Provisional
Probab=92.58 E-value=15 Score=38.20 Aligned_cols=60 Identities=23% Similarity=0.298 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccChhh-HHHhh
Q 013390 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 164 l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~---~g~--~~~ad~VI~a~p~~~-~~~ll 225 (444)
+-+.|.+.+++. |++|++++.|++|..++ ++|+.+.. +|+ ++++|.||.|..... +.+.+
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~l 194 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDA--DGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSL 194 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECC--CeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhc
Confidence 444556666554 78999999999999877 34653222 243 689999999999865 34444
No 131
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=92.53 E-value=0.42 Score=40.51 Aligned_cols=42 Identities=29% Similarity=0.286 Sum_probs=31.0
Q ss_pred cCcEE-EcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccCh
Q 013390 175 RGCEF-LDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI 218 (444)
Q Consensus 175 ~G~~v-~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~ 218 (444)
.|++| +.+.+|+.|...++ + ...+..+|+.+.||+||+|+..
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~-~-~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDD-G-YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCC-c-EEEEECCCCEEEeCEEEECCCC
Confidence 35554 35779999999884 4 5434456888999999999874
No 132
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=92.45 E-value=0.53 Score=49.11 Aligned_cols=57 Identities=26% Similarity=0.324 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
..+...|.+.+++.|++|.+++.|++|..++ |+|.+|.. +|+ .+.|+.||+|+....
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDD--GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 4578888888888899999999999999875 77877654 343 578999999999753
No 133
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=92.39 E-value=0.47 Score=48.32 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEE---eC-Ce--EEecCEEEEccChhhH
Q 013390 163 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVV---CG-KE--TYSAGAVVLAVGISTL 221 (444)
Q Consensus 163 ~l~~~l~~~l~~-~G~~v~~~~~V~~I~~~~~~g~v~~v~---~~-g~--~~~ad~VI~a~p~~~~ 221 (444)
.+.+.+.+.+.+ .|++|+++++|++|..+++ +.++ +. ++ ++ +++||.||+|...+..
T Consensus 185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d-~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLSD-GGWE-VTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC-CCEE-EEEEecCCCceEEEEcCEEEECCCcchH
Confidence 477888888754 4899999999999998733 4454 33 33 42 6899999999999873
No 134
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.39 E-value=0.44 Score=50.34 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 166 ~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
+.|.+.+++.|++|++++.|++|..++ |+|.+|.+ +|+ .+.|+.||+|+.-..
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~--g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVD--GRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 566667778899999999999999865 67888765 243 578999999998643
No 135
>PRK12839 hypothetical protein; Provisional
Probab=92.35 E-value=0.45 Score=49.63 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC---Ce-EE-ecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE-TY-SAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~---g~-~~-~ad~VI~a~p~~~ 220 (444)
..|+..|.+.+++.|++|+++++|++|..+++ |+|++|... ++ ++ .++.||+|+....
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~-g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~ 276 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKN-GRVTGVRVQGPDGAVTVEATRGVVLATGGFP 276 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCC-CcEEEEEEEeCCCcEEEEeCCEEEEcCCCcc
Confidence 45888999999999999999999999987644 678888652 33 23 4589999997654
No 136
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=92.10 E-value=0.64 Score=42.98 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC------------CeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------KETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~------------g~~~~ad~VI~a~p~~ 219 (444)
.+.+.|.+.+.+.|++|+.++.|.+|..+++..+|.+|.++ ..+++|+.||.|++..
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 37788888888899999999999999987631157777664 1368899999999864
No 137
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.04 E-value=0.66 Score=48.48 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
..+.+.|.+.+++.|++|.+++.|++|..++ |+|.++.. +++ .+.|++||+|+....
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILED--NQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 4588999998888899999999999998765 67777653 343 579999999998753
No 138
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=91.97 E-value=0.65 Score=46.04 Aligned_cols=58 Identities=21% Similarity=0.250 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEe-----C-CeEEecCEEEEccChhhHH
Q 013390 163 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-----G-KETYSAGAVVLAVGISTLQ 222 (444)
Q Consensus 163 ~l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~-----~-g~~~~ad~VI~a~p~~~~~ 222 (444)
.|++.+.+.+.+. |.+|++|++|+.|.+.++ |++. |.+ + ..++.|+.|++......+.
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d-g~W~-v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGD-GRWE-VKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCC-CCEE-EEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 4888888888877 899999999999999987 6443 443 1 3578999999999988765
No 139
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=91.95 E-value=0.67 Score=48.67 Aligned_cols=57 Identities=25% Similarity=0.267 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHh----cCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRT----RGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~----~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VI~a~p~~ 219 (444)
..+...|.+.+++ .|++|+++++|++|..+++ |+|++|.+ +| ..+.|+.||+|+.-.
T Consensus 129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~-grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDG-NRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 3466676665543 3799999999999988653 67888864 23 357899999999763
No 140
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=91.95 E-value=0.49 Score=49.44 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC---Ce-EEecC-EEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE-TYSAG-AVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~---g~-~~~ad-~VI~a~p~~~ 220 (444)
..+++.|.+.+++.|++|+++++|++|..++ ++|++|.+. ++ .+.++ .||+|+....
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~--g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEG--GRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 3488889888999999999999999999876 678877652 32 46775 7999998654
No 141
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=91.84 E-value=0.53 Score=48.88 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHh---c-CcEEEcCceeeEEEecCCCCeEEEEEe---C---------------C-eEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRT---R-GCEFLDGRRVTDFIYDEERCCISDVVC---G---------------K-ETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~---~-G~~v~~~~~V~~I~~~~~~g~v~~v~~---~---------------g-~~~~ad~VI~a~p~~ 219 (444)
.+++.|.+.+++ . |++|+++++++++..++ |+|++|.. . + .++.|+.||+|+.--
T Consensus 149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~--g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf 226 (549)
T PRK12834 149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVTD--GAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGI 226 (549)
T ss_pred HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeC--CEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCc
Confidence 477887776642 3 58999999999999865 78999874 1 1 257899999999753
No 142
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=91.80 E-value=0.59 Score=47.09 Aligned_cols=62 Identities=24% Similarity=0.373 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIK 226 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ll~ 226 (444)
..+.+.+.+.+++.|++|+++++|.+|..+ +++..+.++++++.+|.||++++...-..++.
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~---~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~ 252 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIGE---DKVEGVVTDKGEYEADVVIVATGVKPNTEFLE 252 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEecC---CcEEEEEeCCCEEEcCEEEECcCCCcCHHHHH
Confidence 446777888888999999999999999643 33555667777899999999998753333333
No 143
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=91.65 E-value=0.71 Score=45.22 Aligned_cols=52 Identities=27% Similarity=0.295 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccCh
Q 013390 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI 218 (444)
Q Consensus 164 l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~ 218 (444)
+...+.+.++.. +.+| ..+.|++|..++ ++|++|.+. |+.+.+|.||+|+.+
T Consensus 97 y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~--~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 97 YSRAMREKLESHPNLTI-IQGEVTDLIVEN--GKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHTSTTEEE-EES-EEEEEECT--TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHhcCCCeEE-EEcccceEEecC--CeEEEEEeCCCCEEecCEEEEeccc
Confidence 555666677764 4566 478999999988 789999987 889999999999998
No 144
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=91.57 E-value=0.32 Score=49.93 Aligned_cols=97 Identities=12% Similarity=0.058 Sum_probs=66.1
Q ss_pred HhhcCCChhhchHHHHHHHHHHHHHhcCCCcceeeecCCc--chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEE
Q 013390 121 QVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTL--REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS 198 (444)
Q Consensus 121 ~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gg~--~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~ 198 (444)
...++...+-+|......++-.+-..... ..+..|..|- ...+.++|+....+.|+.|..||+|++|....+ ++.
T Consensus 145 g~a~g~e~~lLsPee~~~~~pLLn~d~v~-g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~--~~~ 221 (856)
T KOG2844|consen 145 GKAHGVESELLSPEETQELFPLLNVDDVY-GGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD--KFG 221 (856)
T ss_pred hhhccceeeecCHHHHHHhCcccchhHhe-eeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC--Ccc
Confidence 33566667777766555443221001100 1122343332 245888999989999999999999999998874 466
Q ss_pred EEEeCCeEEecCEEEEccChhh
Q 013390 199 DVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 199 ~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
+|++.-+.+++.+||=|+..|.
T Consensus 222 gVeT~~G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 222 GVETPHGSIETECVVNAAGVWA 243 (856)
T ss_pred ceeccCcceecceEEechhHHH
Confidence 8988866789999999999987
No 145
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.46 E-value=0.57 Score=48.85 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC----Ce--EEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VI~a~p~~~ 220 (444)
..++..|.+.+.+.|++|.+++.|+++..++ |+|++|... ++ .+.|++||+|+.-..
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDN--KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC--CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 4588889888888899999999999999875 788888652 32 578999999998654
No 146
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=91.35 E-value=0.76 Score=45.23 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.+.+.+++.|++|+++++|.+|..++ +.+. +.+ +|+++.+|.||++++...
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~-v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKTD--SGIR-ATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEccC--CEEE-EEEcCCcEEECCEEEECcCCCc
Confidence 355667788889999999999999998765 3343 554 478899999999998643
No 147
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=91.33 E-value=0.52 Score=48.17 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEeC--C--eEEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~-~G~~v~~~~~V~~I~~~~~~g~v~~v~~~--g--~~~~ad~VI~a~p~~~ 220 (444)
..+.+.|.+.+++ .|++|+.++.|++|..++ ++|.+|.+. + ..+.|+.||+|+....
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIET--GRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC--CEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 3588889888877 589999999999998765 667766553 3 4679999999999864
No 148
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=91.29 E-value=16 Score=35.98 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=31.4
Q ss_pred CCEEEeecccccCCCc--chhhHHHHHHHHHHHHHHHHhC
Q 013390 365 PNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 365 ~~l~laGd~~~~~~~~--~~~egAv~SG~~aA~~il~~lg 402 (444)
++++++||..+.-.|. .++.-|+.||..+|+.|.+.+.
T Consensus 264 ~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~ 303 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQ 303 (388)
T ss_pred CCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHh
Confidence 6799999987654442 6788899999999999998875
No 149
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=91.28 E-value=0.72 Score=46.42 Aligned_cols=54 Identities=26% Similarity=0.255 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|++++++++|++|..++ +++. +..+++++.+|.||+|+...
T Consensus 199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~--~~v~-v~~~g~~i~~D~viva~G~~ 252 (438)
T PRK07251 199 SVAALAKQYMEEDGITFLLNAHTTEVKNDG--DQVL-VVTEDETYRFDALLYATGRK 252 (438)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEecC--CEEE-EEECCeEEEcCEEEEeeCCC
Confidence 355666677888999999999999998755 4453 55667889999999998753
No 150
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=91.23 E-value=0.51 Score=46.11 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 013390 163 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (444)
Q Consensus 163 ~l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~ 221 (444)
.++..|.+.+.+. |++|+.+++|++|+. + .|.+++++++||+||+|+.++..
T Consensus 146 ~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~----~---~v~t~~g~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 146 EAIPALAAYLAEQHGVEFHWNTAVTSVET----G---TVRTSRGDVHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCeEEEEec----C---eEEeCCCcEEeCEEEECCCCChh
Confidence 3667788777665 999999999999962 3 25566445789999999999753
No 151
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=91.20 E-value=0.73 Score=48.53 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~ 219 (444)
..|...|.+.+++.|++|..++.|+++..+++ |+|.+|.. +|+ .+.|++||+|+.-.
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 228 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDED-GECRGVIAMSMEDGSIHRFRAHYTVIATGGY 228 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCC-CEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence 45888999988889999999999999987433 77888764 243 56899999999653
No 152
>PRK08275 putative oxidoreductase; Provisional
Probab=91.14 E-value=0.81 Score=47.60 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
..+.+.|.+.+++.|++|..++.|++|..+++ |+|.+|.. +|+ .+.|+.||+|+....
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDAD-GRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCC-CeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 34888898888889999999999999998733 67777753 243 478999999998753
No 153
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=91.11 E-value=0.68 Score=46.63 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|+++++++.|++|..++ +++. +.++++++.+|.||+++...
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~--~~v~-v~~~~g~i~~D~vl~a~G~~ 253 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHE--NQVQ-VHSEHAQLAVDALLIASGRQ 253 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEEE-EEEcCCeEEeCEEEEeecCC
Confidence 3467778888999999999999999998765 4454 55555568999999998654
No 154
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.09 E-value=1.1 Score=47.06 Aligned_cols=59 Identities=14% Similarity=0.158 Sum_probs=46.7
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
+..|.+.|.+.+.+.|++|..++.|+++..+++ |+|.+|.+ +|+ .+.|+.||+|+.-..
T Consensus 147 G~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 147 GHALLHTLYQQNVAAKTQFFVEWMALDLIRDAD-GDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCC-CeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 345888898888888999999999999998644 67888764 243 568999999998643
No 155
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=91.05 E-value=21 Score=37.00 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEE-EEe-CCe-EEecCEEEEccChhh-HHHhhh
Q 013390 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISD-VVC-GKE-TYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 164 l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~-v~~-~g~-~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
+-+.|.+.+.+. +++|+++++|++|+.++ +.++. +.. ++. +++||.||.|.+.+. +.+.+.
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg 192 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHD--DGVTLTVETPDGPYTLEADWVIACDGARSPLREMLG 192 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcC--CEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence 444556666655 68999999999999877 34542 222 243 689999999998764 445554
No 156
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=90.99 E-value=0.8 Score=46.42 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CC---eEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g---~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|++|++|+.|++|..++ +.+. +.+ ++ +++.+|.||++++..
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~-v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 214 EISKLAERALKKRGIKIKTGAKAKKVEQTD--DGVT-VTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEE-EEEEeCCeeEEEEeCEEEEeeCCc
Confidence 466778888889999999999999998765 4454 443 34 578999999998864
No 157
>PRK07512 L-aspartate oxidase; Provisional
Probab=90.99 E-value=0.51 Score=48.52 Aligned_cols=57 Identities=23% Similarity=0.365 Sum_probs=45.4
Q ss_pred chhhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEeC--Ce--EEecCEEEEccChh
Q 013390 161 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~~--g~--~~~ad~VI~a~p~~ 219 (444)
+..+++.|.+.+++. |++|+.+++|++|..++ |+|++|.+. ++ .+.|+.||+|+.-.
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDD--GAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecC--CEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 345888898888765 89999999999998765 678777652 33 57899999999874
No 158
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.82 E-value=0.72 Score=47.84 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
..+.+.|.+.+++.|++|.+++.|++|..+++ ++|++|.. +++ .+.|+.||+|+....
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~-~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDEN-REVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCC-cEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 45888888888888999999999999998763 45777653 243 578999999998643
No 159
>PRK14694 putative mercuric reductase; Provisional
Probab=90.81 E-value=0.79 Score=46.59 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
..+.+.+.+.+++.|++|++++.|++|..++ +.+. +.++++++.+|.||++++...
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~--~~~~-v~~~~~~i~~D~vi~a~G~~p 273 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNG--REFI-LETNAGTLRAEQLLVATGRTP 273 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEEE-EEECCCEEEeCEEEEccCCCC
Confidence 3477788888999999999999999998765 4343 556666799999999997643
No 160
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=90.63 E-value=0.81 Score=46.39 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (444)
..+.+.+.+.+++.|++|++++.|++|..++ +.+. +.+ +|+++++|.||++++...
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~--~~~~-v~~~~g~~i~~D~vi~a~G~~p 272 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGD--DGVI-VHLKSGKKIKADCLLYANGRTG 272 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeC--CeEE-EEECCCCEEEeCEEEEeecCCc
Confidence 3467788888889999999999999998765 3454 444 477899999999998643
No 161
>PLN02507 glutathione reductase
Probab=90.63 E-value=0.96 Score=46.37 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=43.9
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (444)
...+.+.+.+.+++.|++|++++.|++|+.++ +++. +.+ +|+++.+|.||++++..
T Consensus 243 d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~--~~~~-v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 243 DDEMRAVVARNLEGRGINLHPRTNLTQLTKTE--GGIK-VITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CeEE-EEECCCcEEEcCEEEEeecCC
Confidence 34466777788889999999999999998765 3454 444 46789999999998754
No 162
>PRK14727 putative mercuric reductase; Provisional
Probab=90.59 E-value=0.85 Score=46.52 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.+.+.+++.|++|+++++|++|..++ +.+. +.++++++.+|.||++++...
T Consensus 229 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~--~~~~-v~~~~g~i~aD~VlvA~G~~p 283 (479)
T PRK14727 229 LLGETLTACFEKEGIEVLNNTQASLVEHDD--NGFV-LTTGHGELRAEKLLISTGRHA 283 (479)
T ss_pred HHHHHHHHHHHhCCCEEEcCcEEEEEEEeC--CEEE-EEEcCCeEEeCEEEEccCCCC
Confidence 366777888889999999999999998765 4353 555655689999999998754
No 163
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=90.51 E-value=1 Score=45.70 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CC--eEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g--~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|++++.|++|..++ +++. +.+ +| +++.+|.||++++..
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~i~~D~vi~a~G~~ 268 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKND--DQVV-YENKGGETETLTGEKVLVAVGRK 268 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEE-EEEeCCcEEEEEeCEEEEecCCc
Confidence 3466778888889999999999999998765 4465 444 45 478999999999764
No 164
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=90.34 E-value=1.1 Score=47.32 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
..+++.|.+.+.+.|++|..++.|.+|..+++ |+|.+|.. +|+ .+.|++||+|+.-..
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSD-GACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCC-CEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 45888998888888999999999999887643 67888764 243 568999999998743
No 165
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=90.28 E-value=0.93 Score=42.80 Aligned_cols=64 Identities=22% Similarity=0.209 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC---Ce----EEecCEEEEccChhhHHHhhhccC
Q 013390 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE----TYSAGAVVLAVGISTLQELIKNSI 229 (444)
Q Consensus 166 ~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~---g~----~~~ad~VI~a~p~~~~~~ll~~~~ 229 (444)
..|...+.+.+.+|++++.|++|..+++++++++|++. +. ++.++.||++..+=...+||-...
T Consensus 197 ~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SG 267 (296)
T PF00732_consen 197 TYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSG 267 (296)
T ss_dssp HHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTT
T ss_pred cccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhcccc
Confidence 34444444448999999999999876333678888763 32 457899999999877777765543
No 166
>PRK06753 hypothetical protein; Provisional
Probab=90.24 E-value=19 Score=35.08 Aligned_cols=58 Identities=12% Similarity=0.192 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
|.+.|.+.++ +.+|++|++|++|+.++ ++++ |++ +|+++.+|.||-|-..+. +++.+.
T Consensus 100 l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~~~~vigadG~~S~vR~~~~ 159 (373)
T PRK06753 100 LIDIIKSYVK--EDAIFTGKEVTKIENET--DKVT-IHFADGESEAFDLCIGADGIHSKVRQSVN 159 (373)
T ss_pred HHHHHHHhCC--CceEEECCEEEEEEecC--CcEE-EEECCCCEEecCEEEECCCcchHHHHHhC
Confidence 4455554443 45899999999999766 4565 555 477899999999999764 444443
No 167
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=90.03 E-value=1 Score=45.80 Aligned_cols=54 Identities=19% Similarity=0.168 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|++|++++.|.+|..++ +++. +.+ +|+++++|.||++++..
T Consensus 219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~-v~~~~g~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 219 DAAEVLEEVFARRGMTVLKRSRAESVERTG--DGVV-VTLTDGRTVEGSHALMAVGSV 273 (466)
T ss_pred HHHHHHHHHHHHCCcEEEcCCEEEEEEEeC--CEEE-EEECCCcEEEecEEEEeecCC
Confidence 366677788889999999999999998765 4454 444 47789999999998764
No 168
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=90.00 E-value=1.1 Score=45.12 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|+++++++.|++|..+++ + +. +.+ +++++.+|.||+|++..
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~-~-~~-v~~~~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 207 DDMRALLARNMEGRGIRIHPQTSLTSITKTDD-G-LK-VTLSHGEEIVADVVLFATGRS 262 (446)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-e-EE-EEEcCCcEeecCEEEEeeCCC
Confidence 34666777888889999999999999987653 3 44 444 57789999999998863
No 169
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.90 E-value=1.1 Score=46.98 Aligned_cols=59 Identities=29% Similarity=0.364 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCC--CCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~--~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
..+.+.|.+.+++.|++|..++.|++|..+++ +|+|.+|.. +++ .+.|+.||+|+.-..
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 45888999888888999999999999987641 146777754 243 578999999998754
No 170
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=89.89 E-value=0.96 Score=33.32 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=33.1
Q ss_pred cchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC
Q 013390 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG 203 (444)
Q Consensus 160 ~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~ 203 (444)
+...+...+.+.+++.|++|++|+.|.+|..+++ + ++ |.+.
T Consensus 38 ~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-~~-V~~~ 78 (80)
T PF00070_consen 38 FDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGD-G-VE-VTLE 78 (80)
T ss_dssp SSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-S-EE-EEEE
T ss_pred cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-E-EE-EEEe
Confidence 3445777788889999999999999999999885 5 76 6553
No 171
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=89.88 E-value=1.2 Score=45.47 Aligned_cols=56 Identities=13% Similarity=0.252 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|++++.|++|..+++ +.+. +.+ +++++++|.||+++...
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~-~~~~-v~~~~g~~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNAD-GSKH-VTFESGKTLDVDVVMMAIGRV 287 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-ceEE-EEEcCCCEEEcCEEEEeeCCC
Confidence 44778888889999999999999999987653 3233 444 47789999999998753
No 172
>PRK07804 L-aspartate oxidase; Provisional
Probab=89.87 E-value=0.92 Score=47.02 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-------CC--eEEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-------GK--ETYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-------~g--~~~~ad~VI~a~p~~~ 220 (444)
..+.+.|.+.+++.|++|+.++.|.+|..+++ |+|.+|.+ ++ ..+.|+.||+|+....
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGT-GAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCC-CeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 45888999988888999999999999998754 57777654 22 3578999999998743
No 173
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=89.77 E-value=1.3 Score=44.02 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELI 225 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~~~~ll 225 (444)
+.+.+.+.+++.|++|++++.|++|.. + +.+. +.+ +|+++.+|.||++++...-..++
T Consensus 188 ~~~~l~~~l~~~GV~i~~~~~V~~i~~-~--~~~~-v~l~~g~~i~aD~Vv~a~G~~pn~~l~ 246 (396)
T PRK09754 188 VQRYLLQRHQQAGVRILLNNAIEHVVD-G--EKVE-LTLQSGETLQADVVIYGIGISANDQLA 246 (396)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEEc-C--CEEE-EEECCCCEEECCEEEECCCCChhhHHH
Confidence 455677778889999999999999976 3 3354 454 47889999999999875333333
No 174
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=89.74 E-value=1.2 Score=47.23 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
..+...|.+.+.+.|++|+.+++|++|..++ |+|.++.+ +|+ .+.|+.||+|+....
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDG--KRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 3477788888888999999999999999875 67777654 243 467999999998643
No 175
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=89.73 E-value=1.4 Score=44.58 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CC-eEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-ETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g-~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|+++++|+.|++|..+++ +.+. +.+ +| +++.+|.||++++..
T Consensus 207 ~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~-v~~~~g~~~i~~D~vi~a~G~~ 264 (450)
T TIGR01421 207 SMISETITEEYEKEGINVHKLSKPVKVEKTVE-GKLV-IHFEDGKSIDDVDELIWAIGRK 264 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCC-ceEE-EEECCCcEEEEcCEEEEeeCCC
Confidence 34667788888899999999999999987543 3343 454 46 578999999999864
No 176
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=89.67 E-value=1 Score=46.32 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEeC--Ce--EEecC-EEEEccChh
Q 013390 163 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~~--g~--~~~ad-~VI~a~p~~ 219 (444)
.++..+.+.+.+. |++|+++++|++|..++ |+|++|... ++ ++.|+ .||+|+.-.
T Consensus 174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~--g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~ 234 (513)
T PRK12837 174 ALIGRFLAALARFPNARLRLNTPLVELVVED--GRVVGAVVERGGERRRVRARRGVLLAAGGF 234 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCEEEEEEecC--CEEEEEEEEECCcEEEEEeCceEEEeCCCc
Confidence 4777777776554 89999999999998875 778888653 43 57886 799999864
No 177
>PRK07395 L-aspartate oxidase; Provisional
Probab=89.62 E-value=0.75 Score=47.76 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VI~a~p~~ 219 (444)
..+++.|.+.+++. |++|++++.|.+|..++++|+|.+|.+ +|+ .+.|+.||+|+.-.
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 45889998888654 899999999999988642267877765 343 47899999999873
No 178
>PRK13748 putative mercuric reductase; Provisional
Probab=89.20 E-value=1.2 Score=46.44 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|++|++++.|++|..++ +.+. +.++++++.+|.||+++...
T Consensus 311 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~--~~~~-v~~~~~~i~~D~vi~a~G~~ 364 (561)
T PRK13748 311 AIGEAVTAAFRAEGIEVLEHTQASQVAHVD--GEFV-LTTGHGELRADKLLVATGRA 364 (561)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEE-EEecCCeEEeCEEEEccCCC
Confidence 366778888889999999999999998765 4453 55565579999999999864
No 179
>PRK11445 putative oxidoreductase; Provisional
Probab=89.15 E-value=23 Score=34.39 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=36.2
Q ss_pred hcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccChhh-HHHhh
Q 013390 174 TRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 174 ~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VI~a~p~~~-~~~ll 225 (444)
..|+++++++.|++|+.++ +.+. |.. +|+ +++||.||.|..... +.+.+
T Consensus 110 ~~gv~v~~~~~v~~i~~~~--~~~~-v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l 163 (351)
T PRK11445 110 PASVEVYHNSLCRKIWRED--DGYH-VIFRADGWEQHITARYLVGADGANSMVRRHL 163 (351)
T ss_pred hcCCEEEcCCEEEEEEEcC--CEEE-EEEecCCcEEEEEeCEEEECCCCCcHHhHHh
Confidence 4689999999999999876 3354 443 353 689999999999864 34444
No 180
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=89.11 E-value=1.3 Score=48.31 Aligned_cols=61 Identities=10% Similarity=0.118 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhHHHhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELI 225 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~~~~ll 225 (444)
..+.+.+.+++.|++|++++.|++|..+++ +.+..|.+ +|+++.+|.||++++...-..|+
T Consensus 189 ~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~-~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~ 250 (847)
T PRK14989 189 GGEQLRRKIESMGVRVHTSKNTLEIVQEGV-EARKTMRFADGSELEVDFIVFSTGIRPQDKLA 250 (847)
T ss_pred HHHHHHHHHHHCCCEEEcCCeEEEEEecCC-CceEEEEECCCCEEEcCEEEECCCcccCchHH
Confidence 456677888999999999999999986543 22334555 47889999999999875433343
No 181
>PLN02985 squalene monooxygenase
Probab=89.00 E-value=30 Score=35.63 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccChhh-HHHhhh
Q 013390 163 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 163 ~l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~---~g~--~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
.+.+.|.+.+.+. +++++.+ .|.++..++ +.+.+|++ +|+ ++.||.||.|-.... +++.+.
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~--~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~ 215 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEK--GVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLN 215 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEee-eEEEEEEcC--CEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhc
Confidence 3677777777665 5788866 577776554 44555654 354 457999999999864 444444
No 182
>PRK09897 hypothetical protein; Provisional
Probab=88.99 E-value=1.4 Score=45.40 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhcC--cEEEcCceeeEEEecCCCCeEEEEEe-C-CeEEecCEEEEccCh
Q 013390 164 IFEPWMDSMRTRG--CEFLDGRRVTDFIYDEERCCISDVVC-G-KETYSAGAVVLAVGI 218 (444)
Q Consensus 164 l~~~l~~~l~~~G--~~v~~~~~V~~I~~~~~~g~v~~v~~-~-g~~~~ad~VI~a~p~ 218 (444)
..+.+.+.+.+.| ++|+.+++|++|..++ +++. |.+ + ++.+.||+||+|+..
T Consensus 109 ~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~-V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 109 QFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVM-LATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEE-EEECCCCeEEEcCEEEECCCC
Confidence 4455556666666 6888999999999877 4464 565 3 467899999999985
No 183
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=88.88 E-value=1.4 Score=41.50 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|+++++ +.|.+|..++ +.++ |.+. ++++.+|+||+|+...
T Consensus 58 ~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~--~~~~-v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 58 ELMEKMKEQAVKFGAEIIY-EEVIKVDLSD--RPFK-VKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHHHHHHcCCeEEE-EEEEEEEecC--CeeE-EEeCCCCEEEeCEEEECCCCC
Confidence 3677888888888999999 8999999876 4354 5554 6789999999999874
No 184
>PRK08071 L-aspartate oxidase; Provisional
Probab=88.69 E-value=0.89 Score=46.76 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC---Ce--EEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~---g~--~~~ad~VI~a~p~~~ 220 (444)
..+.+.|.+.++ .|++|+.++.|.+|..++ ++|.+|.+. ++ .+.|+.||+|+....
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIEN--GRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecC--CEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 347788887775 589999999999998765 677777652 32 578999999998743
No 185
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=88.58 E-value=1.8 Score=44.02 Aligned_cols=55 Identities=16% Similarity=0.277 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--CC--eEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~g--~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|++|++|++|++|..++ +.+..+.. +| +++++|.||+++...
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~~~g~~~~i~~D~vi~a~G~~ 272 (466)
T PRK07818 214 EVSKEIAKQYKKLGVKILTGTKVESIDDNG--SKVTVTVSKKDGKAQELEADKVLQAIGFA 272 (466)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEeC--CeEEEEEEecCCCeEEEEeCEEEECcCcc
Confidence 367788888999999999999999998655 43432222 34 468999999998753
No 186
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=88.38 E-value=1.1 Score=44.29 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=52.4
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhHHHhhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIK 226 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~~~ll~ 226 (444)
..+.+.+++.++..|+++++++.|.+++-+.+ |+|.-|.+. |.++.||-||+-+.+.-.-.++.
T Consensus 255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~-Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSD-GEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred HHHHHHHHHHHHhcCeEEEEecceeecccCCC-CcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 44777788889999999999999999998876 777777665 88999999999998865544444
No 187
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=88.35 E-value=1.7 Score=45.69 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G-~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+++.| ++|+.++.|.+|..++ ++|++|.. +++ .+.|+.||+|+....
T Consensus 133 ~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 133 SYKPIVAEAAKKALGDNVLNRVFITDLLVDD--NRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC--CEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 47777877777765 9999999999998765 66777642 243 679999999999754
No 188
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=88.16 E-value=1.8 Score=43.81 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCC--eEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g--~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|++|++++.|++|..++ +.+. +..+| +++.+|.||+|++..
T Consensus 212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~--~~v~-~~~~g~~~~i~~D~vivA~G~~ 267 (458)
T PRK06912 212 DIAHILREKLENDGVKIFTGAALKGLNSYK--KQAL-FEYEGSIQEVNAEFVLVSVGRK 267 (458)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEcC--CEEE-EEECCceEEEEeCEEEEecCCc
Confidence 366778888889999999999999998654 3343 44444 368999999999853
No 189
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=88.12 E-value=1.8 Score=44.05 Aligned_cols=54 Identities=11% Similarity=0.220 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEE-eC--C--eEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV-CG--K--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~-~~--g--~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|++|++++.|++|..++ +.+. +. .+ | +++++|.||++++..
T Consensus 225 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~-v~~~~~~g~~~~i~~D~vl~a~G~~ 283 (475)
T PRK06327 225 QVAKEAAKAFTKQGLDIHLGVKIGEIKTGG--KGVS-VAYTDADGEAQTLEVDKLIVSIGRV 283 (475)
T ss_pred HHHHHHHHHHHHcCcEEEeCcEEEEEEEcC--CEEE-EEEEeCCCceeEEEcCEEEEccCCc
Confidence 367777888889999999999999998765 3454 33 23 3 468999999998754
No 190
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=87.89 E-value=1.7 Score=43.62 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELI 225 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ll 225 (444)
.+.+.+.+.+++.|+++++++.|.+|..++ .+ .+..+|+++.+|.||++++...-..++
T Consensus 180 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~---~~-v~~~~g~~i~~D~vi~a~G~~p~~~~l 238 (427)
T TIGR03385 180 EMNQIVEEELKKHEINLRLNEEVDSIEGEE---RV-KVFTSGGVYQADMVILATGIKPNSELA 238 (427)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEecCC---CE-EEEcCCCEEEeCEEEECCCccCCHHHH
Confidence 356677788889999999999999997543 34 234467889999999999875433333
No 191
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=87.89 E-value=32 Score=34.55 Aligned_cols=61 Identities=8% Similarity=0.162 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhcC---cEEEcCceeeEEEec-----CCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhh
Q 013390 164 IFEPWMDSMRTRG---CEFLDGRRVTDFIYD-----EERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 164 l~~~l~~~l~~~G---~~v~~~~~V~~I~~~-----~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~ll 225 (444)
+.+.|.+.+++.+ ++|+++++|.+|+.+ +++..|+ |.+ +|++++||.||-|=..+. +.+.+
T Consensus 119 l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~-v~~~~g~~i~a~llVgADG~~S~vR~~~ 189 (437)
T TIGR01989 119 IQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH-ITLSDGQVLYTKLLIGADGSNSNVRKAA 189 (437)
T ss_pred HHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE-EEEcCCCEEEeeEEEEecCCCChhHHHc
Confidence 5666777777665 799999999999863 1112355 555 478999999999998865 44444
No 192
>PRK08163 salicylate hydroxylase; Provisional
Probab=87.88 E-value=1.8 Score=42.73 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhhH
Q 013390 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (444)
Q Consensus 164 l~~~l~~~l~~~G-~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~~ 221 (444)
+.+.|.+.+.+.+ +++++++.|.+|..++ +.++ |.+ +|+++.||.||.|...+..
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DGVT-VFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecCC--CceE-EEEcCCCEEecCEEEECCCcChH
Confidence 5667777776664 8999999999999776 4465 444 4778999999999988653
No 193
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=87.69 E-value=1.7 Score=43.97 Aligned_cols=53 Identities=17% Similarity=-0.070 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhcCcE--EEcCceeeEEEecCCCCeEEEEEeC--C-e--EEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRGCE--FLDGRRVTDFIYDEERCCISDVVCG--K-E--TYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G~~--v~~~~~V~~I~~~~~~g~v~~v~~~--g-~--~~~ad~VI~a~p~~ 219 (444)
+.+.|.+.++..|.+ |++|++|++|...+ +++. |.+. + . +..+|+||+|++..
T Consensus 113 v~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~-V~~~~~~~~~~~~~~d~VIvAtG~~ 172 (461)
T PLN02172 113 VLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWR-VQSKNSGGFSKDEIFDAVVVCNGHY 172 (461)
T ss_pred HHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEE-EEEEcCCCceEEEEcCEEEEeccCC
Confidence 778888888888876 99999999999876 5554 5442 2 2 45799999999974
No 194
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.61 E-value=1.9 Score=45.54 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHhc--------C-----cEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccCh
Q 013390 162 EKIFEPWMDSMRTR--------G-----CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGI 218 (444)
Q Consensus 162 ~~l~~~l~~~l~~~--------G-----~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~ 218 (444)
..+++.|.+.+++. | ++|..++.|.+|..++ |+|.++.. +++ .+.|++||+|+..
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG--GRIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC--CEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 34888888887766 6 8999999999999765 67777653 243 5789999999996
No 195
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=87.50 E-value=1.8 Score=44.51 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|++++++++|.+|..++ +.+. |.+. |+++.+|++|+|+...
T Consensus 268 ~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~--~~~~-v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 268 QLAANLEEHIKQYPIDLMENQRAKKIETED--GLIV-VTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHHhCCeEEcCCEEEEEEecC--CeEE-EEECCCCEEEeCEEEECCCCC
Confidence 367778888888899999999999998765 3343 5554 6789999999999975
No 196
>PTZ00058 glutathione reductase; Provisional
Probab=87.29 E-value=2.2 Score=44.36 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|++++.|.+|..+++ +++..+..+ ++++++|.||++++..
T Consensus 278 ~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~-~~v~v~~~~~~~~i~aD~VlvA~Gr~ 335 (561)
T PTZ00058 278 ETIINELENDMKKNNINIITHANVEEIEKVKE-KNLTIYLSDGRKYEHFDYVIYCVGRS 335 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC-CcEEEEECCCCEEEECCEEEECcCCC
Confidence 34677788889999999999999999986543 335422234 4579999999998753
No 197
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.24 E-value=2.1 Score=44.84 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~-~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
..+.+.|.+.+.+ .|++|+.++.|.+|..++ |+|.+|.. +++ .+.|+.||+|+....
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN--GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 3488888887765 589999999999998765 67777653 243 578999999998753
No 198
>PTZ00052 thioredoxin reductase; Provisional
Probab=87.21 E-value=2 Score=44.08 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (444)
..+.+.+.+.+++.|+++++++.|++|...+ +.+. +.. +|+++.+|.||+++....
T Consensus 222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~--~~~~-v~~~~g~~i~~D~vl~a~G~~p 278 (499)
T PTZ00052 222 RQCSEKVVEYMKEQGTLFLEGVVPINIEKMD--DKIK-VLFSDGTTELFDTVLYATGRKP 278 (499)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC--CeEE-EEECCCCEEEcCEEEEeeCCCC
Confidence 3466788888999999999999999998765 3344 444 577889999999998643
No 199
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=86.96 E-value=37 Score=34.32 Aligned_cols=39 Identities=13% Similarity=-0.051 Sum_probs=31.9
Q ss_pred CCCEEEeecccccCCC--cchhhHHHHHHHHHHHHHHHHhC
Q 013390 364 FPNLFMAGDWITTRHG--SWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 364 ~~~l~laGd~~~~~~~--~~~~egAv~SG~~aA~~il~~lg 402 (444)
.+|+.++||..+.-.| +.++.-|+.||+.||+.+.+.+.
T Consensus 308 ~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~ 348 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSE 348 (450)
T ss_pred CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHh
Confidence 4689999998764333 27899999999999999998764
No 200
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=86.91 E-value=2.2 Score=44.03 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|.+++++++|.+|..++ +.+. |.+. |+++.+|.||+|+...
T Consensus 267 ~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~--~~~~-V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 267 KLAAALEEHVKEYDVDIMNLQRASKLEPAA--GLIE-VELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEE-EEECCCCEEEcCEEEECCCCC
Confidence 477888888888999999999999999875 3343 5554 6789999999999984
No 201
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=86.29 E-value=1.9 Score=43.18 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=40.9
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccCh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI 218 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~ 218 (444)
...+.+.+.+.+++.|++|+++++|.+|.. +.|. ..+|+++.+|.||++++.
T Consensus 227 ~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~----~~v~--~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 227 DQALRKYGQRRLRRLGVDIRTKTAVKEVLD----KEVV--LKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCeEEEEeC----CEEE--ECCCCEEEccEEEEccCC
Confidence 344677788889999999999999999863 2232 335788999999999874
No 202
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=85.82 E-value=2.1 Score=48.71 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHh---cCcEEEcCceeeEEEecCC----C---CeEEEEEe------CCe--EEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRT---RGCEFLDGRRVTDFIYDEE----R---CCISDVVC------GKE--TYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~---~G~~v~~~~~V~~I~~~~~----~---g~v~~v~~------~g~--~~~ad~VI~a~p~~ 219 (444)
.++..+.+.+++ .|++|+++++|+++..+++ + ++|++|.+ +|+ .+.|+.||+|+.--
T Consensus 545 ~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf 619 (1167)
T PTZ00306 545 TIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGF 619 (1167)
T ss_pred HHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCc
Confidence 367777777765 3899999999999998641 1 26888865 233 57899999999863
No 203
>PRK06370 mercuric reductase; Validated
Probab=85.65 E-value=3 Score=42.27 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEE-EEEe-C-CeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS-DVVC-G-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~-~v~~-~-g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|++|++++.|.+|..++ +.+. .+.. + +.++.+|.||+|++..
T Consensus 213 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 213 DVAAAVREILEREGIDVRLNAECIRVERDG--DGIAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEEeCCCceEEEeCEEEECcCCC
Confidence 356777888889999999999999998765 3332 1222 2 4578999999999753
No 204
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=85.55 E-value=2.8 Score=42.79 Aligned_cols=55 Identities=16% Similarity=0.104 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CC---eEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g---~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|++++.|++|...+ +.+. |+. ++ +++.+|.||++++..
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~-v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQIE--AKVK-VTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcC--CeEE-EEEecCCcceEEEeCEEEEEecCC
Confidence 4467778888999999999999999998765 3344 433 33 478999999999863
No 205
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=84.93 E-value=43 Score=33.17 Aligned_cols=39 Identities=13% Similarity=-0.014 Sum_probs=32.1
Q ss_pred CCCEEEeecccccCCC--cchhhHHHHHHHHHHHHHHHHhC
Q 013390 364 FPNLFMAGDWITTRHG--SWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 364 ~~~l~laGd~~~~~~~--~~~~egAv~SG~~aA~~il~~lg 402 (444)
.+|+.++||..+.-.| ++++.-|+.||..||+.+.+.+.
T Consensus 269 ~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~ 309 (398)
T TIGR02028 269 VGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESR 309 (398)
T ss_pred CCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHh
Confidence 3789999998765444 27899999999999999998764
No 206
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=84.89 E-value=3.4 Score=41.92 Aligned_cols=54 Identities=13% Similarity=0.148 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--C--CeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G--KETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~--g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|++|++++.|++|..++ +.+. +.+ + ++++.+|.||++++..
T Consensus 208 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~~~-v~~~~~~~~~~i~~D~ViiA~G~~ 265 (463)
T TIGR02053 208 EISAAVEEALAEEGIEVVTSAQVKAVSVRG--GGKI-ITVEKPGGQGEVEADELLVATGRR 265 (463)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEcC--CEEE-EEEEeCCCceEEEeCEEEEeECCC
Confidence 366777788888999999999999998765 3332 333 2 3679999999998753
No 207
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=84.86 E-value=2.7 Score=45.70 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (444)
+.+.+.+.+++.|++|++|+.|++|..++ ++..|.+ +|+++.+|.||++++..
T Consensus 184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~~~---~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 184 AGRLLQRELEQKGLTFLLEKDTVEIVGAT---KADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEcCC---ceEEEEECCCCEEEcCEEEECCCCC
Confidence 45566777889999999999999997543 3445665 47889999999999864
No 208
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=84.57 E-value=3.3 Score=41.73 Aligned_cols=55 Identities=24% Similarity=0.297 Sum_probs=43.7
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-Ce--EEecCEEEEccCh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE--TYSAGAVVLAVGI 218 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~--~~~ad~VI~a~p~ 218 (444)
..-+.+.+.+.+++.|.++++++.|++++..++ + +. +.++ |+ ++++|.|++|+.=
T Consensus 213 D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~-~-v~-v~~~~g~~~~~~ad~vLvAiGR 270 (454)
T COG1249 213 DPEISKELTKQLEKGGVKILLNTKVTAVEKKDD-G-VL-VTLEDGEGGTIEADAVLVAIGR 270 (454)
T ss_pred CHHHHHHHHHHHHhCCeEEEccceEEEEEecCC-e-EE-EEEecCCCCEEEeeEEEEccCC
Confidence 344788888889888899999999999998773 3 54 5554 43 7889999999975
No 209
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=84.53 E-value=3.8 Score=41.69 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CC--eEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g--~~~~ad~VI~a~p~~~ 220 (444)
.+.+.+.+.+++.|++|++++.|++|..+.+ +++..+.+ +| +++.+|.||++++...
T Consensus 222 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~~~~~~~g~~~~i~~D~vi~a~G~~p 281 (472)
T PRK05976 222 ELSKEVARLLKKLGVRVVTGAKVLGLTLKKD-GGVLIVAEHNGEEKTLEADKVLVSVGRRP 281 (472)
T ss_pred HHHHHHHHHHHhcCCEEEeCcEEEEEEEecC-CCEEEEEEeCCceEEEEeCEEEEeeCCcc
Confidence 3667778888899999999999999986211 23543433 45 3689999999998753
No 210
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=84.38 E-value=3.5 Score=43.20 Aligned_cols=57 Identities=19% Similarity=0.214 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VI~a~p~~~ 220 (444)
..|.+.|.+.+.+. +++|..++.|++|..++ |+|.+|.. +| ..+.|+.||+|+....
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC--CEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 45778888776664 78999999999999875 67777643 34 3678999999998643
No 211
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=84.18 E-value=3.8 Score=41.59 Aligned_cols=55 Identities=24% Similarity=0.267 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEE-EEe--C--CeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD-VVC--G--KETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~-v~~--~--g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|++|++++.|++|+.++ +.+.. +.. + ++++.+|.||++++..
T Consensus 216 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 216 ETAKTLQKALTKQGMKFKLGSKVTGATAGA--DGVSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred HHHHHHHHHHHhcCCEEEECcEEEEEEEcC--CeEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 366778888999999999999999998765 33432 221 2 3578999999999864
No 212
>PLN02815 L-aspartate oxidase
Probab=84.06 E-value=3.1 Score=43.62 Aligned_cols=58 Identities=12% Similarity=0.230 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCC--eEEEEEe----CCe--EEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERC--CISDVVC----GKE--TYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g--~v~~v~~----~g~--~~~ad~VI~a~p~~ 219 (444)
..+...|.+.+++. |++|..+++|++|..+++++ +|.+|.. +|+ .+.|++||+|+.-.
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 221 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGA 221 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcc
Confidence 34788888887665 88999999999999864313 2777754 243 56899999999864
No 213
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=83.96 E-value=5.3 Score=41.81 Aligned_cols=57 Identities=26% Similarity=0.215 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VI~a~p~~~ 220 (444)
..|.+.|.+.+.+. ++++..++.|++|..++ |+|.+|.. +| ..+.|+.||+|+.-..
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD--GRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC--CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 45888888877654 78999999999999875 67887753 34 3678999999998743
No 214
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=83.91 E-value=2.2 Score=44.15 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=39.4
Q ss_pred hcCcEEEcCceeeEEEecCCCCeEEEEEeC--Ce---EEecCEEEEccChhhHHHhhh
Q 013390 174 TRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE---TYSAGAVVLAVGISTLQELIK 226 (444)
Q Consensus 174 ~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~--g~---~~~ad~VI~a~p~~~~~~ll~ 226 (444)
+.+.+|++++.|++|..++ +++++|.+. ++ ...++.||++..+-...+||-
T Consensus 206 r~nl~i~~~~~V~rI~~~~--~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl 261 (532)
T TIGR01810 206 RPNLEVQTRAFVTKINFEG--NRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQ 261 (532)
T ss_pred CCCeEEEeCCEEEEEEecC--CeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHH
Confidence 4578999999999999986 678888763 32 357899999999855555544
No 215
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=83.44 E-value=4.8 Score=40.74 Aligned_cols=55 Identities=25% Similarity=0.263 Sum_probs=41.4
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
+-+-|.+...+.|++++.++ |.++..+++ |.|+.|.+. |++++||.||=|+....
T Consensus 156 fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~-g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 156 FDQFLRRHAEERGVEVIEGT-VVDVELDED-GRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHTT-EEEET--EEEEEE-TT-SEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHhcCCCEEEeCE-EEEEEEcCC-CCEEEEEECCCCEEEEeEEEECCCccc
Confidence 66667777788899999885 888888775 778888885 88899999999998754
No 216
>PRK07538 hypothetical protein; Provisional
Probab=83.42 E-value=50 Score=32.77 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=40.3
Q ss_pred hHHHHHHHHHh-cCc-EEEcCceeeEEEecCCCCeEEEEEeC---C--eEEecCEEEEccChhh-HHHhhh
Q 013390 164 IFEPWMDSMRT-RGC-EFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 164 l~~~l~~~l~~-~G~-~v~~~~~V~~I~~~~~~g~v~~v~~~---g--~~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
|-+.|.+.+.+ .|. +|+++++|++|+.+++ + +.....+ | ++++||.||-|-..+. +.+.+.
T Consensus 104 l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~-~-~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~ 172 (413)
T PRK07538 104 LQMLLLDAVRERLGPDAVRTGHRVVGFEQDAD-V-TVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLY 172 (413)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC-c-eEEEEeccCCCccceEEeeEEEECCCCCHHHhhhhc
Confidence 45556665544 464 7999999999998764 4 3322222 2 4789999999999865 444443
No 217
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=83.30 E-value=3.6 Score=42.91 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
+...+.+.+++. |++| +.+.|.+|..++ ++|.+|.+. |..+.|+.||+|+....
T Consensus 102 y~kaL~e~L~~~~nV~I-~q~~V~~Li~e~--grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 102 YRAAMREILENQPNLDL-FQGEVEDLIVEN--GRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHcCCCcEE-EEeEEEEEEecC--CEEEEEEECCCCEEECCEEEEeeCcch
Confidence 445566666655 6777 467899998876 678888876 77899999999999654
No 218
>PLN02546 glutathione reductase
Probab=83.23 E-value=4.8 Score=41.88 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=42.4
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeE-EecCEEEEccChhh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKET-YSAGAVVLAVGIST 220 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~-~~ad~VI~a~p~~~ 220 (444)
...+.+.+.+.+++.|++|++++.|.+|..+++ +.+. +.+++++ ..+|.||++++...
T Consensus 292 d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~-g~v~-v~~~~g~~~~~D~Viva~G~~P 350 (558)
T PLN02546 292 DEEVRDFVAEQMSLRGIEFHTEESPQAIIKSAD-GSLS-LKTNKGTVEGFSHVMFATGRKP 350 (558)
T ss_pred CHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCC-CEEE-EEECCeEEEecCEEEEeecccc
Confidence 344566677888899999999999999986543 4443 5555444 45899999998643
No 219
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=83.21 E-value=2.3 Score=37.88 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=47.4
Q ss_pred eeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 013390 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (444)
Q Consensus 154 ~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~ 221 (444)
++|+|=.+.-|.+.+.+..++.|.+|.+. .|.++..+. .-.+ +.++.+.+.+|+||+|+.+..-
T Consensus 62 GFPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss--kpF~-l~td~~~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 62 GFPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSS--KPFK-LWTDARPVTADAVILATGASAK 125 (322)
T ss_pred CCCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccC--CCeE-EEecCCceeeeeEEEeccccee
Confidence 35555333448899999888889998875 477788776 3354 6678778999999999998543
No 220
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=82.76 E-value=3.5 Score=40.49 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=36.4
Q ss_pred HHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 170 ~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
+.+++.|++++++++|++|..++ .. |.++++++.+|++|+|+...
T Consensus 66 ~~~~~~gv~~~~~~~V~~id~~~--~~---v~~~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDAEA--QV---VKSQGNQWQYDKLVLATGAS 110 (377)
T ss_pred HHHHhCCCEEECCCEEEEEECCC--CE---EEECCeEEeCCEEEECCCCC
Confidence 44567799999999999998765 32 45678889999999999974
No 221
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=82.70 E-value=4.4 Score=42.47 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHhcC----cEEEcCceeeEEEecCCCCeEEEEEeC----Ce--EEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRG----CEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G----~~v~~~~~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VI~a~p~~~ 220 (444)
..|...|.+.+++.+ ++|..++.|.++..+++ |+|.+|... ++ .+.|++||+||.-..
T Consensus 133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDE-GVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCC-CEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 457888877766543 67999999999998644 778888652 33 468999999998744
No 222
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=82.61 E-value=3.9 Score=42.63 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
+...+.+.+++. ++++. ...|.++..+++ +++.+|.+. |..+.||.||+|+..+.
T Consensus 98 y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~-g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 98 YRKAMRNALENQPNLSLF-QGEVEDLILEDN-DEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHcCCCcEEE-EeEEEEEEEecC-CcEEEEEECCCCEEECCEEEEccCccc
Confidence 555666767776 56675 457777876532 568888876 66899999999999985
No 223
>PRK10262 thioredoxin reductase; Provisional
Probab=82.34 E-value=2.8 Score=40.16 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-----C--eEEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----K--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-----g--~~~~ad~VI~a~p~~ 219 (444)
+.+.+.+.+++.|+++++++.|++|..++ +++..|.+. + +++.+|.||+++...
T Consensus 187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~~--~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~ 247 (321)
T PRK10262 187 LIKRLMDKVENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 247 (321)
T ss_pred HHHHHHhhccCCCeEEEeCCEEEEEEcCC--ccEEEEEEEEcCCCCeEEEEECCEEEEEeCCc
Confidence 55667777888899999999999998654 335444431 1 368999999988753
No 224
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=82.11 E-value=2.5 Score=40.93 Aligned_cols=59 Identities=24% Similarity=0.311 Sum_probs=35.9
Q ss_pred CCcchhhHHHHHHHH------HhcCcEEEcCceeeEEEecCCCCeEEEEEeC----C--eEEecCEEEEccCh
Q 013390 158 GTLREKIFEPWMDSM------RTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGI 218 (444)
Q Consensus 158 gg~~~~l~~~l~~~l------~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VI~a~p~ 218 (444)
+|+...+++.|.+.+ .+...+|+.+++|++++.+++ |++. +.+. + .++.+|+||+||+.
T Consensus 269 ~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~-~~~~-l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 269 GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD-GGVR-LTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp SEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSEE-EEEEETTT--EEEEEESEEEE---E
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC-CEEE-EEEEECCCCCeEEEecCEEEEcCCc
Confidence 455555666665543 122368999999999999885 4565 4432 2 46799999999974
No 225
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=81.53 E-value=5.9 Score=38.36 Aligned_cols=58 Identities=16% Similarity=0.316 Sum_probs=43.7
Q ss_pred CcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-C---C--eEEecCEEEEccCh
Q 013390 159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---K--ETYSAGAVVLAVGI 218 (444)
Q Consensus 159 g~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~---g--~~~~ad~VI~a~p~ 218 (444)
+|..-+.....+.|..+|.+++++|.|..+..+++ |.|. |++ + + +++++|.+.+++.-
T Consensus 249 ~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~d-g~v~-i~ve~ak~~k~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 249 VMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGD-GPVE-IEVENAKTGKKETLECDVLLVSIGR 312 (506)
T ss_pred ccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCC-CceE-EEEEecCCCceeEEEeeEEEEEccC
Confidence 33333666667778889999999999999999987 5565 443 2 2 57899999988864
No 226
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=80.79 E-value=4.1 Score=40.31 Aligned_cols=40 Identities=25% Similarity=0.235 Sum_probs=34.6
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
+.+.++|||-+||.. |+. +++-.|..+|..+|+.|+.+++
T Consensus 445 ~~t~i~gLy~aGdGA--G~a-rgI~~Aaa~Gi~~A~~i~~k~~ 484 (486)
T COG2509 445 LSTSIKGLYPAGDGA--GLA-RGIVSAAADGIKAAEGIARKYG 484 (486)
T ss_pred ceeeecceEEccccc--ccc-chhHHHhhhhHHHHHHHHHHhc
Confidence 456789999999977 566 7889999999999999998765
No 227
>PRK07846 mycothione reductase; Reviewed
Probab=80.78 E-value=5.3 Score=40.37 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (444)
+.+.+.+.+ +.|++++++++|++|+.++ +++. +.+ +|+++++|.||++++...
T Consensus 209 ~~~~l~~l~-~~~v~i~~~~~v~~i~~~~--~~v~-v~~~~g~~i~~D~vl~a~G~~p 262 (451)
T PRK07846 209 ISERFTELA-SKRWDVRLGRNVVGVSQDG--SGVT-LRLDDGSTVEADVLLVATGRVP 262 (451)
T ss_pred HHHHHHHHH-hcCeEEEeCCEEEEEEEcC--CEEE-EEECCCcEeecCEEEEEECCcc
Confidence 444554433 5689999999999998765 4454 454 477899999999998643
No 228
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=80.78 E-value=4.4 Score=40.34 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~ll 225 (444)
|.+.|.+.+. ...|+++++|.+|+.+++ +++ |.+ +|++++||.||.|-..+. +++.+
T Consensus 107 l~~~L~~~~~--~~~v~~~~~v~~i~~~~~--~~~-v~~~~g~~~~ad~vVgADG~~S~vR~~l 165 (414)
T TIGR03219 107 FLDALLKHLP--EGIASFGKRATQIEEQAE--EVQ-VLFTDGTEYRCDLLIGADGIKSALRDYV 165 (414)
T ss_pred HHHHHHHhCC--CceEEcCCEEEEEEecCC--cEE-EEEcCCCEEEeeEEEECCCccHHHHHHh
Confidence 6666666553 357899999999998763 465 554 577899999999999875 34444
No 229
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=80.68 E-value=5.2 Score=39.24 Aligned_cols=61 Identities=5% Similarity=0.122 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh-HHHhhh
Q 013390 163 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 163 ~l~~~l~~~l~~~G-~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
.|-+.|.+.+.+.+ +++++++.|++|..++ ++|+ |.+++++++||.||-|-..+. +.+.+.
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~-v~~~~~~~~adlvIgADG~~S~vR~~l~ 167 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHN--DYSI-IKFDDKQIKCNLLIICDGANSKVRSHYF 167 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeEE-EEEcCCEEeeCEEEEeCCCCchhHHhcC
Confidence 36677777777665 7899999999999877 3465 666655899999999999864 444443
No 230
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=80.38 E-value=5.3 Score=40.38 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=24.4
Q ss_pred HHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe
Q 013390 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC 202 (444)
Q Consensus 169 ~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~ 202 (444)
.+.+++.|++|++++.+.+|..+++ |++++|.+
T Consensus 316 ~~~l~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~ 348 (449)
T TIGR01316 316 IAHAEEEGVKFHFLCQPVEIIGDEE-GNVRAVKF 348 (449)
T ss_pred HHHHHhCCCEEEeccCcEEEEEcCC-CeEEEEEE
Confidence 3556788999999999999986543 56765543
No 231
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=80.22 E-value=7.2 Score=40.69 Aligned_cols=53 Identities=26% Similarity=0.206 Sum_probs=35.0
Q ss_pred CCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCCCCccccccCCCCChHHHHH
Q 013390 363 SFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEAL 422 (444)
Q Consensus 363 ~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~~~~~~~~~~~~~~~~~~~~ 422 (444)
.++||||||+-.++ . +.+.|..+|..|+--+...+. +.+..++|. ++.+++++
T Consensus 356 ~~~gLf~AGqi~Gt--~--Gy~eAaa~Gl~Ag~naa~~~~-~~~~~~l~r--~~~yiGvl 408 (617)
T TIGR00136 356 LIQGLFFAGQINGT--T--GYEEAAAQGLMAGINAALKLQ-NKEPFILKR--SEAYIGVL 408 (617)
T ss_pred CCCCeEEccccCCc--c--hHHHHHHHHHHHHHHHHHHhc-CCCCCCCCc--ccchHhHH
Confidence 47999999996642 2 456788889888865555443 255567774 34666644
No 232
>PLN02661 Putative thiazole synthesis
Probab=79.65 E-value=7.6 Score=37.60 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=39.8
Q ss_pred hHHHHHHHHH-hcCcEEEcCceeeEEEecCCCCeEEEEEe-------C--C------eEEecCEEEEccC
Q 013390 164 IFEPWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVC-------G--K------ETYSAGAVVLAVG 217 (444)
Q Consensus 164 l~~~l~~~l~-~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-------~--g------~~~~ad~VI~a~p 217 (444)
+...|.+.+. ..|++|+.++.|.++..++ +++.+|.+ + + ..++|++||+|+.
T Consensus 174 ~~stLi~ka~~~~gVkI~~~t~V~DLI~~~--grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATG 241 (357)
T PLN02661 174 FTSTIMSKLLARPNVKLFNAVAAEDLIVKG--DRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCG 241 (357)
T ss_pred HHHHHHHHHHhcCCCEEEeCeEeeeEEecC--CEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCC
Confidence 4566666544 4688999999999999876 67777764 1 1 2579999999998
No 233
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=79.54 E-value=4.6 Score=39.39 Aligned_cols=51 Identities=24% Similarity=0.284 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.+.+.+++.|+++++++.|.+|. + +. |.+ +|+++.+|.||++++...
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~--~--~~---v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGP--D--GA---LILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEc--C--Ce---EEeCCCCEEecCEEEEccCCCh
Confidence 356777788899999999999999985 2 32 334 578899999999998643
No 234
>PRK09077 L-aspartate oxidase; Provisional
Probab=79.25 E-value=8.3 Score=39.95 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHhc-CcEEEcCceeeEEEecC----CCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDE----ERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~----~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
..+...|.+.+.+. +++|..++.|.++..++ ++++|++|.. +++ .+.|+.||+|+....
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 45778888877665 79999999999998653 1156887764 243 578999999998753
No 235
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=79.18 E-value=11 Score=37.59 Aligned_cols=83 Identities=19% Similarity=0.125 Sum_probs=46.1
Q ss_pred HHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCC-CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 321 YLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 321 ~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~-~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.+-+..|++..++++..=+.. .++ +...|.... +..+ ..++||||||+-+.+ - +.+-|+.+|..|+..+..
T Consensus 290 ~~~r~Ipgle~a~~~r~G~~~-~~~-~i~~p~~l~--~~l~~k~~~~l~~AGqi~g~--~--Gy~ea~a~G~~Ag~n~~~ 361 (436)
T PRK05335 290 RVFRMIPGLENAEFVRYGVMH-RNT-FINSPKLLD--PTLQLKKRPNLFFAGQITGV--E--GYVESAASGLLAGINAAR 361 (436)
T ss_pred HHHhcccchhceEEEeceEEe-ecc-ccCChhhCc--hhccccCCCCEEeeeeecCc--h--HHHHHHHHHHHHHHHHHH
Confidence 445678988765555433310 111 111122211 1122 257899999998753 2 334588899999888776
Q ss_pred HhCCCCccccccC
Q 013390 400 YLGDGSFSKIIPV 412 (444)
Q Consensus 400 ~lg~~~~~~~~~~ 412 (444)
.+. +.+..++|.
T Consensus 362 ~~~-g~~~~~~~~ 373 (436)
T PRK05335 362 LAL-GKEPVIPPP 373 (436)
T ss_pred Hhc-CCCCCCCCc
Confidence 664 244456664
No 236
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=78.48 E-value=6.2 Score=40.74 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=37.3
Q ss_pred CcEEEcCceeeEEEecCCC-CeEEEEEe----CCe--EEecCEEEEccChhhHHHhh
Q 013390 176 GCEFLDGRRVTDFIYDEER-CCISDVVC----GKE--TYSAGAVVLAVGISTLQELI 225 (444)
Q Consensus 176 G~~v~~~~~V~~I~~~~~~-g~v~~v~~----~g~--~~~ad~VI~a~p~~~~~~ll 225 (444)
..+|++|+.|.+|..++++ ++|++|.. +|+ ++.|+.||+|...=...+||
T Consensus 228 n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL 284 (544)
T TIGR02462 228 RFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL 284 (544)
T ss_pred CEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence 4799999999999987642 35776643 243 57899999999876665664
No 237
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=78.29 E-value=7 Score=38.46 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhh
Q 013390 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 164 l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~ll 225 (444)
|-..|.+.+.+. |++|+.+++|++++.+++ .++ |++ +|.+++||.||.|...+. +.+.+
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~--~~~-v~~~~g~~~~~~lvIgADG~~S~vR~~~ 173 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAE--GNR-VTLESGAEIEAKWVIGADGANSQVRQLA 173 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCC--eEE-EEECCCCEEEeeEEEEecCCCchhHHhc
Confidence 444555555443 689999999999998773 465 555 477899999999999865 34443
No 238
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=77.49 E-value=1e+02 Score=32.71 Aligned_cols=62 Identities=29% Similarity=0.306 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhcCc--EEEcCceeeEEEecCCC-CeEEEEEe-------CC--eEEecCEEEEccChhh-HHHhhh
Q 013390 164 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEER-CCISDVVC-------GK--ETYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 164 l~~~l~~~l~~~G~--~v~~~~~V~~I~~~~~~-g~v~~v~~-------~g--~~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
+-+.|.+.+.+.|+ +++.|++|++++.++++ ..|+ |++ +| ++++||.||-|=..+. +++.+.
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~-v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lg 217 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVT-VTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIG 217 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEE-EEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcC
Confidence 55666677766664 78999999999987531 2354 333 24 5789999999998864 455553
No 239
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=77.25 E-value=7.4 Score=39.37 Aligned_cols=39 Identities=31% Similarity=0.469 Sum_probs=30.1
Q ss_pred CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 362 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
+..+++|.+||.+. + + ..+..|+..|+.||..|...+..
T Consensus 415 Ts~~~VfA~GD~~~-~-~-~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 415 TSLPGVFAGGDIVT-G-A-ATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred cCCCCEEEeCCcCC-C-c-hHHHHHHHHHHHHHHHHHHHHhc
Confidence 45688999999774 2 2 36677999999999999888853
No 240
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=77.17 E-value=8.6 Score=38.88 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (444)
+.+.+.+.+ +.|+++++++.|++|..++ +++. +.+ +|+++++|.||++++..
T Consensus 212 ~~~~l~~~~-~~gI~i~~~~~V~~i~~~~--~~v~-v~~~~g~~i~~D~vl~a~G~~ 264 (452)
T TIGR03452 212 ISDRFTEIA-KKKWDIRLGRNVTAVEQDG--DGVT-LTLDDGSTVTADVLLVATGRV 264 (452)
T ss_pred HHHHHHHHH-hcCCEEEeCCEEEEEEEcC--CeEE-EEEcCCCEEEcCEEEEeeccC
Confidence 455554433 4689999999999998765 4454 444 47789999999999854
No 241
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=76.87 E-value=4.9 Score=40.43 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=36.4
Q ss_pred HHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--CCeEEe--cCEEEEccChh
Q 013390 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKETYS--AGAVVLAVGIS 219 (444)
Q Consensus 169 ~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~g~~~~--ad~VI~a~p~~ 219 (444)
.+.+++.|+++++++.|.+|..++ ..|. +.. ++++++ +|++|+|+...
T Consensus 63 ~~~~~~~gv~~~~~~~V~~id~~~--~~v~-~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 63 PEEFIKSGIDVKTEHEVVKVDAKN--KTIT-VKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred HHHHHHCCCeEEecCEEEEEECCC--CEEE-EEECCCCCEEEecCCEEEECCCCC
Confidence 455667899999999999998876 4454 443 255666 99999999974
No 242
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=76.47 E-value=4.7 Score=38.23 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-C--eEEecCEEEEccChhhHHHhhhc
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGISTLQELIKN 227 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g--~~~~ad~VI~a~p~~~~~~ll~~ 227 (444)
++-+.|...+++.|+.+..+-+|.+.+..+ |+|+.|.+. . .-++||.+|+|+.--..+.|..+
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~--~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae 324 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG--GRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAE 324 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeC--CeEEEEEecccccCCCChhHeeeeccccccccchhh
Confidence 478899999999999999999999999998 779888775 2 35689999999987655555443
No 243
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=76.41 E-value=6 Score=40.26 Aligned_cols=38 Identities=32% Similarity=0.328 Sum_probs=30.5
Q ss_pred CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
+..+|+|.+||.+. +. ..+..|+..|+.||..|...++
T Consensus 428 Ts~~gVfa~GD~~~-g~--~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 428 TSNPKVFAAGDMRR-GQ--SLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred CCCCCEEEccccCC-Cc--hhHHHHHHHHHHHHHHHHHHHh
Confidence 45689999999875 22 3567799999999999999885
No 244
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=76.18 E-value=6.4 Score=38.97 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=35.5
Q ss_pred HHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 171 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 171 ~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.|+++++++.|.+|..++ ..| +..+|+++.+|++|+||....
T Consensus 67 ~~~~~~i~~~~g~~V~~id~~~--~~v--~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 67 WWQENNVHLHSGVTIKTLGRDT--REL--VLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred HHHHCCCEEEcCCEEEEEECCC--CEE--EECCCCEEEcCEEEEccCCCC
Confidence 3456799999999999998765 322 233577899999999998753
No 245
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=76.00 E-value=0.86 Score=45.74 Aligned_cols=54 Identities=30% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHhcCcEEEcCceeeEEEecCCCCeEEEEEeC----CeEEecCEEEEccChhhHHHhhhc
Q 013390 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KETYSAGAVVLAVGISTLQELIKN 227 (444)
Q Consensus 172 l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~----g~~~~ad~VI~a~p~~~~~~ll~~ 227 (444)
+.+.|++|++++.|.++..++ ++|++|.+. ..++.|+.||=|+.-..+..+.+-
T Consensus 100 l~e~gv~v~~~t~v~~v~~~~--~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG~ 157 (428)
T PF12831_consen 100 LAEAGVEVLLGTRVVDVIRDG--GRITGVIVETKSGRKEIRAKVFIDATGDGDLAALAGA 157 (428)
T ss_dssp ------------------------------------------------------------
T ss_pred ccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence 356799999999999999987 678888774 347899999999997666555443
No 246
>PRK07236 hypothetical protein; Provisional
Probab=75.98 E-value=6.8 Score=38.56 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=37.7
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (444)
+.+.|.+.+ .+.+|++++.|++|+.++ +.|+ |+. +|++++||.||.|=..+.
T Consensus 102 l~~~L~~~~--~~~~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vIgADG~~S 154 (386)
T PRK07236 102 LYRALRAAF--PAERYHLGETLVGFEQDG--DRVT-ARFADGRRETADLLVGADGGRS 154 (386)
T ss_pred HHHHHHHhC--CCcEEEcCCEEEEEEecC--CeEE-EEECCCCEEEeCEEEECCCCCc
Confidence 444444433 245799999999999876 4476 444 478899999999988754
No 247
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.65 E-value=7.3 Score=37.25 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=46.8
Q ss_pred CcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 159 g~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
++.+.+.+-+.+.++..|++++.++.|+++....+ |....++..|....+|.++.|+.-.
T Consensus 227 ~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~-g~~~~i~~~~~i~~vd~llwAiGR~ 286 (478)
T KOG0405|consen 227 GFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDD-GLELVITSHGTIEDVDTLLWAIGRK 286 (478)
T ss_pred chhHHHHHHHHHHhhhcceeecccccceeeeecCC-CceEEEEeccccccccEEEEEecCC
Confidence 44555777788889999999999999999998876 5344355567666799999999753
No 248
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=75.60 E-value=10 Score=38.59 Aligned_cols=38 Identities=29% Similarity=0.465 Sum_probs=30.1
Q ss_pred CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
+..++||.+||.... + ..+..|+..|+.||+.|...|+
T Consensus 429 T~~~gVfa~GD~~~~--~-~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 429 TTNPKIFAGGDAVRG--A-DLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCCCCEEEECCcCCC--c-cHHHHHHHHHHHHHHHHHHHhc
Confidence 456899999997742 3 3566799999999999988876
No 249
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=75.54 E-value=6 Score=43.06 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=36.7
Q ss_pred HHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 169 ~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
.+.+++.|++++++++|++|..++ ..| +..+|+++.+|++|+|+...
T Consensus 61 ~~~~~~~gv~~~~g~~V~~Id~~~--k~V--~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 61 KDWYEKHGITLYTGETVIQIDTDQ--KQV--ITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred HHHHHHCCCEEEcCCeEEEEECCC--CEE--EECCCcEeeCCEEEECCCCC
Confidence 455677899999999999998765 322 23347789999999999974
No 250
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=75.54 E-value=6.9 Score=39.38 Aligned_cols=53 Identities=9% Similarity=0.162 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
..+.+.+.+.+++.|+++++++.|++|+ + ..++ ..+|+++.+|.||++++...
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~--~--~~v~--~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAIN--G--NEVT--FKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEe--C--CEEE--ECCCCEEEeCEEEECcCCCc
Confidence 3466778888999999999999999996 2 2232 23477899999999998643
No 251
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=75.53 E-value=12 Score=39.46 Aligned_cols=57 Identities=14% Similarity=0.203 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCC-CeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEER-CCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~-g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
+...+.+.+.+.+++|..++.|.++..++++ |+|++|.. +|+ .+.|++||+|+....
T Consensus 128 ~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 128 YKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred HHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 5556666666777899999999999986421 47888764 243 578999999999864
No 252
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=74.79 E-value=10 Score=39.26 Aligned_cols=56 Identities=20% Similarity=0.070 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhcCc--EEEcCceeeEEEecCCC---CeEEEEEeC--Ce--EEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEER---CCISDVVCG--KE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~--~v~~~~~V~~I~~~~~~---g~v~~v~~~--g~--~~~ad~VI~a~p~~~ 220 (444)
+.+.|...++..+. .|++||.|.+|+..++. |++. |+++ |+ +..+|+||+|+....
T Consensus 86 v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~-V~~~~~g~~~~~~fD~VvvatG~~~ 150 (531)
T PF00743_consen 86 VLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWE-VTTENDGKEETEEFDAVVVATGHFS 150 (531)
T ss_dssp HHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEE-EEETTTTEEEEEEECEEEEEE-SSS
T ss_pred HHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEE-EEeecCCeEEEEEeCeEEEcCCCcC
Confidence 55555555554443 69999999999986531 4444 5554 43 457999999998754
No 253
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=74.15 E-value=8.7 Score=37.82 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEE---EEEeCCeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS---DVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~---~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.+.+.+++.|+++++++.|.+|+..+ +.+. .+..+++.+.+|.++++++..-
T Consensus 179 ~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 179 EVAEELAELLEKYGVELLLGTKVVGVEGKG--NTLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred HHHHHHHHHHHHCCcEEEeCCceEEEEccc--CcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 477888888999999999999999999876 3333 2344578899999999997643
No 254
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=73.92 E-value=11 Score=35.86 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=42.7
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
+..|.+.+.+..+..|.++.. ..|.+++..+ ... .|.++.++++|+.||+|+....
T Consensus 60 g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~--~~F-~v~t~~~~~~ak~vIiAtG~~~ 115 (305)
T COG0492 60 GPELMEQMKEQAEKFGVEIVE-DEVEKVELEG--GPF-KVKTDKGTYEAKAVIIATGAGA 115 (305)
T ss_pred hHHHHHHHHHHHhhcCeEEEE-EEEEEEeecC--ceE-EEEECCCeEEEeEEEECcCCcc
Confidence 345888888888888888888 8888888665 234 4777755599999999999854
No 255
>PRK12831 putative oxidoreductase; Provisional
Probab=73.63 E-value=10 Score=38.55 Aligned_cols=38 Identities=29% Similarity=0.337 Sum_probs=30.9
Q ss_pred CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
|..+|||.+||.+. + + ..+-.|+..|+.||..|...|.
T Consensus 424 Ts~pgVfAaGD~~~-g-~-~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 424 TSKEGVFAGGDAVT-G-A-ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred cCCCCEEEeCCCCC-C-c-hHHHHHHHHHHHHHHHHHHHhc
Confidence 45689999999764 2 3 4678899999999999988875
No 256
>PRK02106 choline dehydrogenase; Validated
Probab=73.36 E-value=5.5 Score=41.49 Aligned_cols=52 Identities=10% Similarity=0.115 Sum_probs=39.9
Q ss_pred hcCcEEEcCceeeEEEecCCCCeEEEEEeC--Ce---EEecCEEEEccChhhHHHhhhc
Q 013390 174 TRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE---TYSAGAVVLAVGISTLQELIKN 227 (444)
Q Consensus 174 ~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~--g~---~~~ad~VI~a~p~~~~~~ll~~ 227 (444)
+.+.+|++++.|++|..++ +++++|++. ++ .+.++.||+|...-...+||-.
T Consensus 213 ~~nl~i~~~a~V~rI~~~~--~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~ 269 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEG--KRAVGVEYERGGGRETARARREVILSAGAINSPQLLQL 269 (560)
T ss_pred CCCcEEEcCCEEEEEEEeC--CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhh
Confidence 4568999999999999985 678888762 22 3578999999998766666543
No 257
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=72.92 E-value=4.3 Score=39.60 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=49.6
Q ss_pred cCCcchhhHHHHHH----HHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhHHHhhh
Q 013390 157 RGTLREKIFEPWMD----SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIK 226 (444)
Q Consensus 157 ~gg~~~~l~~~l~~----~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~~~ll~ 226 (444)
++.|...|.+.|.+ .+++.|+.|+-|+.|+++.... +++. +.++ |.++..|.||+|+.-.--..|..
T Consensus 384 k~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~--~nl~-lkL~dG~~l~tD~vVvavG~ePN~ela~ 455 (659)
T KOG1346|consen 384 KYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCC--KNLV-LKLSDGSELRTDLVVVAVGEEPNSELAE 455 (659)
T ss_pred cCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhc--cceE-EEecCCCeeeeeeEEEEecCCCchhhcc
Confidence 36666666666654 4778899999999999999876 4564 5554 88999999999997644334443
No 258
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=72.80 E-value=6.4 Score=38.15 Aligned_cols=41 Identities=34% Similarity=0.323 Sum_probs=27.7
Q ss_pred EEEcCceeeEEEecCCCC-eEEEEEe-----CCeEEecCEEEEccCh
Q 013390 178 EFLDGRRVTDFIYDEERC-CISDVVC-----GKETYSAGAVVLAVGI 218 (444)
Q Consensus 178 ~v~~~~~V~~I~~~~~~g-~v~~v~~-----~g~~~~ad~VI~a~p~ 218 (444)
.++++++|++|...++++ ....|.+ +++++.|++||++++.
T Consensus 111 ~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 111 QVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG 157 (341)
T ss_dssp TEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----
T ss_pred ceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence 499999999999987421 2334666 2568999999999983
No 259
>PRK05868 hypothetical protein; Validated
Probab=72.75 E-value=9.8 Score=37.31 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=39.0
Q ss_pred hcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhhhc
Q 013390 174 TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIKN 227 (444)
Q Consensus 174 ~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~ll~~ 227 (444)
..|++|++++.|++|+.++ ++|+ |++ +|++++||.||-|=..+. +.+.+..
T Consensus 116 ~~~v~i~~~~~v~~i~~~~--~~v~-v~~~dg~~~~adlvIgADG~~S~vR~~~~~ 168 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDG--DSVR-VTFERAAAREFDLVIGADGLHSNVRRLVFG 168 (372)
T ss_pred cCCcEEEeCCEEEEEEecC--CeEE-EEECCCCeEEeCEEEECCCCCchHHHHhcC
Confidence 3578999999999998765 4476 555 477899999999999864 5565543
No 260
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=72.35 E-value=9.3 Score=38.21 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=34.6
Q ss_pred HHhcCcEEEcCceeeEEEecCCCCeEEEEEeC--CeEEe--cCEEEEccChh
Q 013390 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYS--AGAVVLAVGIS 219 (444)
Q Consensus 172 l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~--g~~~~--ad~VI~a~p~~ 219 (444)
+++.|+++++++.|++|..++ +.+. +..+ ++++. +|+||+|+...
T Consensus 54 ~~~~gv~~~~~~~V~~id~~~--~~v~-~~~~~~~~~~~~~yd~lIiATG~~ 102 (427)
T TIGR03385 54 IKKRGIDVKTNHEVIEVNDER--QTVV-VRNNKTNETYEESYDYLILSPGAS 102 (427)
T ss_pred HHhcCCeEEecCEEEEEECCC--CEEE-EEECCCCCEEecCCCEEEECCCCC
Confidence 467799999999999998765 4454 4433 45677 99999999973
No 261
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=71.88 E-value=13 Score=37.54 Aligned_cols=54 Identities=26% Similarity=0.180 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhcCc--EEEcCceeeEEEecCCCCeEEEEEeC-CeE--EecCEEEEccCh
Q 013390 164 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVCG-KET--YSAGAVVLAVGI 218 (444)
Q Consensus 164 l~~~l~~~l~~~G~--~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~--~~ad~VI~a~p~ 218 (444)
+-+.+...+++.+. +|++++.|+.+..+.+ ++.+.|+++ +.+ ++||.||+|+..
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~-~~~w~V~~~~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDED-TKRWTVTTSDGGTGELTADFVVVATGH 142 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCC-CCeEEEEEcCCCeeeEecCEEEEeecC
Confidence 56677777777665 7899999999999876 444557765 433 569999999987
No 262
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=71.61 E-value=12 Score=39.73 Aligned_cols=38 Identities=32% Similarity=0.480 Sum_probs=31.8
Q ss_pred CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
|..+|||-+||-+. + + ..+..|+..|+.||..|...|+
T Consensus 615 Ts~~gVfAaGD~~~-g-~-~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 615 TSNPKIFAGGDAVR-G-A-DLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred cCCCCEEEcCCcCC-C-C-cHHHHHHHHHHHHHHHHHHHhC
Confidence 56789999999874 2 3 4677899999999999999887
No 263
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=70.78 E-value=7 Score=34.13 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=35.8
Q ss_pred HHHHHHHhcCcEEEcCceeeEEEecCCCCeE-----E--EEEeC-CeEEecCEEEEccCh
Q 013390 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCI-----S--DVVCG-KETYSAGAVVLAVGI 218 (444)
Q Consensus 167 ~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v-----~--~v~~~-g~~~~ad~VI~a~p~ 218 (444)
.+.+.+...+.++++++.|.+|.... +.+ . .+... +.++.+|+||+|+..
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 120 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPES--KRVVCPAVTIQVVETGDGREIKYDYLVIATGS 120 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEEST--TEEEETCEEEEEEETTTEEEEEEEEEEEESTE
T ss_pred ccccccccceEEEeeccccccccccc--cccccCcccceeeccCCceEecCCeeeecCcc
Confidence 44445566789999999999998876 432 1 11222 568999999999995
No 264
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=70.72 E-value=11 Score=38.72 Aligned_cols=51 Identities=12% Similarity=0.281 Sum_probs=37.0
Q ss_pred HHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEeC----C--eEEecCEEEEccChhh
Q 013390 168 WMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIST 220 (444)
Q Consensus 168 l~~~l~~-~G~~v~~~~~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VI~a~p~~~ 220 (444)
+.+.+++ .|++|++++.|++|..++ ++++.|.+. + +++.+|.||+++....
T Consensus 393 l~~~l~~~~gV~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 393 LQDKLKSLPNVDILTSAQTTEIVGDG--DKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred HHHHHhcCCCCEEEECCeeEEEEcCC--CEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 4455655 599999999999998664 456555541 2 4689999999987643
No 265
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=70.65 E-value=13 Score=37.13 Aligned_cols=90 Identities=17% Similarity=0.080 Sum_probs=46.8
Q ss_pred HHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCC-CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 321 YLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 321 ~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~-~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.+-+..|++..++++.+-+.. .+ .+...|..+. +..+ ..++||||||.-+++ - |+.| |..+|..|+--+..
T Consensus 289 ~~~r~ipgle~a~~~r~g~~~-~~-~~i~~p~~L~--~~l~~k~~~~lf~AGQi~G~--~-GY~E-aaa~Gl~agina~~ 360 (433)
T TIGR00137 289 RVFRLIPGLENAEFVRMGVMH-RN-TFINSPQLLT--ASLHFKDRQTLFFAGQLTGV--E-GYVA-STAGGWLAGINAAR 360 (433)
T ss_pred HHHhcCcCccceEEeecceEE-ee-eeeCCHHHhh--HHhccCCCCCEEECcccccc--h-HHHH-HHHHHHHHHHHHHH
Confidence 445678998766555432210 00 1111222221 2222 246899999997754 2 4555 56677666654444
Q ss_pred HhCCCCccccccCCCCChHHHHH
Q 013390 400 YLGDGSFSKIIPVEEDEPHIEAL 422 (444)
Q Consensus 400 ~lg~~~~~~~~~~~~~~~~~~~~ 422 (444)
.+. +.+..++| ++.+++++
T Consensus 361 ~~~-~~~~~~~~---~~~~iG~l 379 (433)
T TIGR00137 361 LAL-GEPLLTLP---AETMMGAL 379 (433)
T ss_pred HHc-CCCCCCCC---CcchHHHH
Confidence 443 23444555 35666644
No 266
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=70.55 E-value=7.6 Score=36.74 Aligned_cols=56 Identities=23% Similarity=0.252 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhc------CcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccChhhH
Q 013390 164 IFEPWMDSMRTR------GCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGISTL 221 (444)
Q Consensus 164 l~~~l~~~l~~~------G~~v~~~~~V~~I~~~~~~g~v~~v~~---~g~--~~~ad~VI~a~p~~~~ 221 (444)
|+.+|.+.+++. -++|.+|++|..|..++ |+|.+|+. +|+ .+.+++||+|+.-...
T Consensus 141 i~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~--gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 141 IVKALSTRLKKKASENPELVKILLNSKVVDILRNN--GKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred HHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCC--CeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 566666555432 25799999999999766 78988875 243 5689999999986554
No 267
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=70.34 E-value=14 Score=34.44 Aligned_cols=52 Identities=25% Similarity=0.383 Sum_probs=37.5
Q ss_pred HHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEe-----C-CeEEecCEEEEccChh
Q 013390 165 FEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-----G-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 165 ~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~-----~-g~~~~ad~VI~a~p~~ 219 (444)
...+.+.+++. |+++++++.|.+|..++ ++..+.. + ++++.+|.||++++..
T Consensus 179 ~~~~~~~l~~~~gv~~~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 237 (300)
T TIGR01292 179 EKILLDRLRKNPNIEFLWNSTVKEIVGDN---KVEGVKIKNTVTGEEEELKVDGVFIAIGHE 237 (300)
T ss_pred CHHHHHHHHhCCCeEEEeccEEEEEEccC---cEEEEEEEecCCCceEEEEccEEEEeeCCC
Confidence 34556667777 99999999999998643 3443432 1 3578999999999854
No 268
>PRK12831 putative oxidoreductase; Provisional
Probab=69.59 E-value=7.1 Score=39.65 Aligned_cols=45 Identities=13% Similarity=0.201 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC--CeEEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~--g~~~~ad~VI~a~p~~ 219 (444)
+.+...+.+++.|++|++|+.|.+ .+ ..+ .+.+.+|+||+|+..+
T Consensus 193 ~~~~~~~~~~~~gv~i~~~~~v~~--------~v---~~~~~~~~~~~d~viiAtGa~ 239 (464)
T PRK12831 193 VVKKEIENIKKLGVKIETNVVVGK--------TV---TIDELLEEEGFDAVFIGSGAG 239 (464)
T ss_pred HHHHHHHHHHHcCCEEEcCCEECC--------cC---CHHHHHhccCCCEEEEeCCCC
Confidence 555666778889999999997621 12 112 1335699999999974
No 269
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=69.42 E-value=6.9 Score=41.66 Aligned_cols=45 Identities=20% Similarity=0.079 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 013390 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (444)
Q Consensus 166 ~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~ 221 (444)
+...+.+++.|+++++|+.|.. . + ........+|+||+|+.....
T Consensus 381 ~~~~~~~~~~Gv~~~~~~~v~~-------~-i---~~~~~~~~~DavilAtGa~~~ 425 (654)
T PRK12769 381 ARRREIFSAMGIEFELNCEVGK-------D-I---SLESLLEDYDAVFVGVGTYRS 425 (654)
T ss_pred HHHHHHHHHCCeEEECCCEeCC-------c-C---CHHHHHhcCCEEEEeCCCCCC
Confidence 3334445566667776665521 0 1 001111358999999987543
No 270
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=68.36 E-value=7.7 Score=37.81 Aligned_cols=51 Identities=24% Similarity=0.195 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (444)
+...+.+.+++.|++++.+ .|.+|..++ .. |.+ +|+++.+|++|+|+....
T Consensus 56 ~~~~~~~~~~~~gv~~~~~-~v~~id~~~--~~---V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 56 IRIDLRRLARQAGARFVIA-EATGIDPDR--RK---VLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred hcccHHHHHHhcCCEEEEE-EEEEEeccc--CE---EEECCCCcccccEEEEccCCCC
Confidence 3344555666779999875 799998765 32 344 477899999999998654
No 271
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=68.21 E-value=17 Score=36.89 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-C--C--eEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~--g--~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++. ++|++++.|++|+.++ +.+. +.+ + + +++++|.||++++..
T Consensus 215 ~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~--~~~~-v~~~~~~~~~~~i~~D~vi~a~G~~ 273 (471)
T PRK06467 215 KDIVKVFTKRIKKQ-FNIMLETKVTAVEAKE--DGIY-VTMEGKKAPAEPQRYDAVLVAVGRV 273 (471)
T ss_pred HHHHHHHHHHHhhc-eEEEcCCEEEEEEEcC--CEEE-EEEEeCCCcceEEEeCEEEEeeccc
Confidence 34666777778777 9999999999998765 3354 433 2 2 368999999999874
No 272
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=66.90 E-value=20 Score=36.16 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-C--CeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--KETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~--g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++. ++|+++++|.+|+.+++ .+++ +.. + ++++.+|.||++++..
T Consensus 211 ~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~-~~v~-~~~~~~~~~~i~~D~vi~a~G~~ 267 (460)
T PRK06292 211 EVSKQAQKILSKE-FKIKLGAKVTSVEKSGD-EKVE-ELEKGGKTETIEADYVLVATGRR 267 (460)
T ss_pred HHHHHHHHHHhhc-cEEEcCCEEEEEEEcCC-ceEE-EEEcCCceEEEEeCEEEEccCCc
Confidence 3566777778888 99999999999986552 2343 322 2 3578999999998763
No 273
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=66.84 E-value=25 Score=36.88 Aligned_cols=89 Identities=19% Similarity=0.143 Sum_probs=44.9
Q ss_pred HHHHHhhccCCCCCeeeeEEEEEeCCCc-cccC-CCCCCCCCCCC-CCCCCEEEeecccccCCCcchhhHHHHHHHHHHH
Q 013390 319 VSYLSKCIKDFSTATVMDHKIRRFPKSL-THFF-PGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAAN 395 (444)
Q Consensus 319 l~~l~~~~p~~~~~~~~~~~v~r~~~~~-~~~~-pg~~~~~p~~~-~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~ 395 (444)
..++-+..|++..++++ |.-++. +.|. |..+ .+.+. ..++||||||.-.++ . |+ |.|..+|..|.-
T Consensus 318 Q~~~~r~ipGle~a~i~-----r~gy~ieyd~i~p~~L--~~~Le~k~~~~lf~AGQinGt--~-GY-eEaaaqGl~Agi 386 (618)
T PRK05192 318 QLEMLRSIPGLENAEIL-----RPGYAIEYDYVDPRQL--KPTLETKKIKGLFFAGQINGT--T-GY-EEAAAQGLIAGI 386 (618)
T ss_pred HHHHHhcCcCccceeEe-----ecccceeecccChhhc--chhheecCCCCeEECcccCCC--h-HH-HHHHHHHHHHHH
Confidence 34455678888754433 333332 1121 2222 23333 357999999987754 2 34 445555555443
Q ss_pred HHHHHhCCCCccccccCCCCChHHHHH
Q 013390 396 RVVDYLGDGSFSKIIPVEEDEPHIEAL 422 (444)
Q Consensus 396 ~il~~lg~~~~~~~~~~~~~~~~~~~~ 422 (444)
-....+. .+..+++. ++++++++
T Consensus 387 Naa~~~~--~~~~~~~r--~~~yiGvl 409 (618)
T PRK05192 387 NAALKVQ--GEPFILKR--SEAYIGVL 409 (618)
T ss_pred HHHHHhc--CCCCCCCc--chhhHHHH
Confidence 3222232 34456663 35666654
No 274
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=66.74 E-value=17 Score=35.73 Aligned_cols=73 Identities=21% Similarity=0.185 Sum_probs=37.7
Q ss_pred HHHHHhhccCCCCCeeeeEEE-EEeCCCccccCCCCCCCCCCCCC-CCCCEEEeecccccCCCcchhhHHHHHHHHHHHH
Q 013390 319 VSYLSKCIKDFSTATVMDHKI-RRFPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWSQERSYVTGLEAANR 396 (444)
Q Consensus 319 l~~l~~~~p~~~~~~~~~~~v-~r~~~~~~~~~pg~~~~~p~~~~-~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~ 396 (444)
..++-+..|++..++++.+-+ ++.. +..++. .....++ .++|||+||+-+++ . |+ +.|..+|..|+.-
T Consensus 314 Q~~~~r~IpGLe~a~~~r~Gy~~ey~---~v~~~~---l~~~l~~k~~~~lf~AGqi~G~--~-Gy-~eaaa~G~~ag~n 383 (392)
T PF01134_consen 314 QKRIFRSIPGLENAEILRPGYAHEYD---FVDPPQ---LLNTLETKKIPGLFFAGQINGT--E-GY-EEAAAQGLIAGIN 383 (392)
T ss_dssp HHHHHTTSTTTTT--EEE--EEEEEE---EE-GGG---BBTTSBBSSSBTEEE-GGGGTB----SH-HHHHHHHHHHHHH
T ss_pred HHHHhhcCCChhcChhhheEEeeeee---EEehhh---cccceEECCCCCceECCCCcch--h-HH-HHHHHHHHHHHHH
Confidence 344566789887655543221 1110 111111 1123333 48999999998864 2 34 4566788888877
Q ss_pred HHHHh
Q 013390 397 VVDYL 401 (444)
Q Consensus 397 il~~l 401 (444)
+...+
T Consensus 384 a~~~~ 388 (392)
T PF01134_consen 384 AARRL 388 (392)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 275
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=66.62 E-value=7.3 Score=36.03 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=29.0
Q ss_pred CCCEEEeeccccc--CCCc--chhhHHHHHHHHHHHHHHHHhC
Q 013390 364 FPNLFMAGDWITT--RHGS--WSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 364 ~~~l~laGd~~~~--~~~~--~~~egAv~SG~~aA~~il~~lg 402 (444)
.||||.||..... |.|- -..-|=+.||++||+.|+++|+
T Consensus 213 ~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~ 255 (257)
T PRK04176 213 YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLK 255 (257)
T ss_pred cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhh
Confidence 6999999987653 2221 2334456799999999999986
No 276
>PRK06475 salicylate hydroxylase; Provisional
Probab=66.61 E-value=22 Score=35.17 Aligned_cols=61 Identities=21% Similarity=0.242 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEe--C-CeEEecCEEEEccChhh-HHHhh
Q 013390 163 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--G-KETYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 163 ~l~~~l~~~l~~-~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~-g~~~~ad~VI~a~p~~~-~~~ll 225 (444)
.|.+.|.+.+.. .|++|+++++|.++..++ ++++.... + +++++||.||-|=..+. +.+.+
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~--~~v~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~ 173 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTG--NSITATIIRTNSVETVSAAYLIACDGVWSMLRAKA 173 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCC--CceEEEEEeCCCCcEEecCEEEECCCccHhHHhhc
Confidence 366677776655 378999999999998876 44652221 3 35789999999999875 44554
No 277
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=65.95 E-value=6.5 Score=41.35 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=41.4
Q ss_pred HHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 167 ~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
.|.+.+++.|.++++++.+++|..+ +++.++... |..+.||-||+|+.+.
T Consensus 192 lL~~~le~~Gi~~~l~~~t~ei~g~---~~~~~vr~~DG~~i~ad~VV~a~GIr 242 (793)
T COG1251 192 LLRRKLEDLGIKVLLEKNTEEIVGE---DKVEGVRFADGTEIPADLVVMAVGIR 242 (793)
T ss_pred HHHHHHHhhcceeecccchhhhhcC---cceeeEeecCCCcccceeEEEecccc
Confidence 4556678999999999999999873 457778875 8889999999999864
No 278
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=65.52 E-value=11 Score=38.28 Aligned_cols=47 Identities=21% Similarity=0.129 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~ 221 (444)
+.+...+.+++.|+++++|+.|..- + ..++....+|+||+|++....
T Consensus 193 ~~~~~~~~~~~~Gv~~~~~~~v~~~--------~---~~~~~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 193 VLSRRREIFTAMGIEFHLNCEVGRD--------I---SLDDLLEDYDAVFLGVGTYRS 239 (467)
T ss_pred HHHHHHHHHHHCCCEEECCCEeCCc--------c---CHHHHHhcCCEEEEEeCCCCC
Confidence 4555667788899999999987321 1 111112368999999998654
No 279
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=65.40 E-value=9.5 Score=38.52 Aligned_cols=39 Identities=33% Similarity=0.441 Sum_probs=31.2
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHh
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~l 401 (444)
.+|..+|+|.+||.+. + + ..+..|+..|+.||..|...|
T Consensus 411 ~~Ts~~~VfA~GD~~~-g-~-~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 411 QRTSIPGVFAGGDIIL-G-A-ATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CccCCCCEEEecCCCC-C-c-HHHHHHHHHHHHHHHHHHhhC
Confidence 3567899999999874 2 3 467789999999999987654
No 280
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=65.23 E-value=19 Score=37.43 Aligned_cols=53 Identities=25% Similarity=0.389 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|++++ ++.|.+|..++ . ...|.+.++.+.+++||+|+...
T Consensus 61 ~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~--~-~~~V~~~~g~~~a~~lVlATGa~ 113 (555)
T TIGR03143 61 ELMQEMRQQAQDFGVKFL-QAEVLDVDFDG--D-IKTIKTARGDYKTLAVLIATGAS 113 (555)
T ss_pred HHHHHHHHHHHHcCCEEe-ccEEEEEEecC--C-EEEEEecCCEEEEeEEEECCCCc
Confidence 367777777788899985 78899998765 3 33466665568999999999984
No 281
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=65.16 E-value=8.5 Score=35.55 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=29.0
Q ss_pred CCCCEEEeeccccc--CCCc--chhhHHHHHHHHHHHHHHHHhC
Q 013390 363 SFPNLFMAGDWITT--RHGS--WSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 363 ~~~~l~laGd~~~~--~~~~--~~~egAv~SG~~aA~~il~~lg 402 (444)
=+||||.||..... |.|- -..-|=+.||++||+.|+++|+
T Consensus 211 ~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 211 VVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred ccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 36999999988753 3331 2334456799999999999873
No 282
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=65.09 E-value=17 Score=36.59 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=33.6
Q ss_pred HhcCcEEEcCceeeEEEecCCCCeEEEEEeC--Ce--EEecCEEEEccChhh
Q 013390 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 173 ~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~--g~--~~~ad~VI~a~p~~~ 220 (444)
++.|++++++++|.+|..++ ..|. +... ++ ++.+|++|+|+....
T Consensus 69 ~~~~i~v~~~~~V~~Id~~~--~~v~-~~~~~~~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDER--QTVT-VLNRKTNEQFEESYDKLILSPGASA 117 (438)
T ss_pred HhCCCEEEeCCEEEEEECCC--CEEE-EEECCCCcEEeeecCEEEECCCCCC
Confidence 45689999999999999876 4454 4432 23 368999999998753
No 283
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=64.24 E-value=20 Score=35.22 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=40.8
Q ss_pred CcchhhHHHHHHHHH-------hcCcEEEcCceeeEEEecCCCCeEEEEEeC----C--eEEecCEEEEccChh
Q 013390 159 TLREKIFEPWMDSMR-------TRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 159 g~~~~l~~~l~~~l~-------~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VI~a~p~~ 219 (444)
|++...+..|.+.+= +..+++..+++|.+++.+++ |++. +.+. | ++++.|+||+||.-.
T Consensus 268 gI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~-g~~~-l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 268 GISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGD-GRYR-LTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCC-ceEE-EEEeeccCCCceEEEeeEEEEecccc
Confidence 444446666655531 22357899999999999986 6553 4432 2 478999999999986
No 284
>PRK10262 thioredoxin reductase; Provisional
Probab=64.16 E-value=25 Score=33.47 Aligned_cols=53 Identities=13% Similarity=0.212 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
+.+.+.+.+...+.+++.+ .|.+|...+ +.++ +..+.+.+.+|+||+|+....
T Consensus 65 ~~~~~~~~~~~~~~~~~~~-~v~~v~~~~--~~~~-v~~~~~~~~~d~vilAtG~~~ 117 (321)
T PRK10262 65 LMERMHEHATKFETEIIFD-HINKVDLQN--RPFR-LTGDSGEYTCDALIIATGASA 117 (321)
T ss_pred HHHHHHHHHHHCCCEEEee-EEEEEEecC--CeEE-EEecCCEEEECEEEECCCCCC
Confidence 4566666666677788776 577888765 4444 444445689999999999853
No 285
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=63.58 E-value=11 Score=38.35 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
+++...+.+.+.|+++++|+.|.. ..+. +.....+|+||+|+....
T Consensus 195 ~~~~~~~~~~~~gv~~~~~~~v~~-~~~~----------~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 195 VIDRRIELMEAEGIEFRTNVEVGK-DITA----------EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred HHHHHHHHHHhCCcEEEeCCEECC-cCCH----------HHHHhhCCEEEEecCCCC
Confidence 445555667888999999987742 1111 111236899999998863
No 286
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=63.34 E-value=16 Score=40.17 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=35.8
Q ss_pred HHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 013390 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (444)
Q Consensus 169 ~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (444)
.+.+++.|+++++++.|.+|..+. . + |.+ +|+++.+|++|+||...
T Consensus 66 ~~~~~~~gI~~~~g~~V~~Id~~~--~-~--V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 66 EGFYEKHGIKVLVGERAITINRQE--K-V--IHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred HHHHHhCCCEEEcCCEEEEEeCCC--c-E--EEECCCcEEECCEEEECCCCC
Confidence 344567899999999999998754 2 2 344 47789999999999964
No 287
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=62.74 E-value=21 Score=37.94 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=30.5
Q ss_pred CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
|..+++|.+||-+. + + ..+..|+..|+.||+.|...|.
T Consensus 598 Ts~~gVfA~GD~~~-g-~-~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 598 THLKKVFAGGDAVH-G-A-DLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred cCCCCEEEcCCCCC-C-c-hHHHHHHHHHHHHHHHHHHHHh
Confidence 45689999999774 2 3 4677899999999999988874
No 288
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=61.70 E-value=9.1 Score=38.98 Aligned_cols=40 Identities=30% Similarity=0.320 Sum_probs=29.6
Q ss_pred CceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhHH
Q 013390 182 GRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ 222 (444)
Q Consensus 182 ~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~~ 222 (444)
...|..|..+++ .+|++|.++ |..+.|++||+|+..-.-.
T Consensus 120 q~~v~dli~e~~-~~v~GV~t~~G~~~~a~aVVlTTGTFL~G 160 (621)
T COG0445 120 QGEVEDLIVEEG-QRVVGVVTADGPEFHAKAVVLTTGTFLRG 160 (621)
T ss_pred HhhhHHHhhcCC-CeEEEEEeCCCCeeecCEEEEeecccccc
Confidence 345666666552 358888887 8899999999999875533
No 289
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=61.11 E-value=22 Score=38.61 Aligned_cols=38 Identities=26% Similarity=0.452 Sum_probs=30.2
Q ss_pred CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
|..+|||-+||-.. + + .++--|+..|+.||..|.+.|.
T Consensus 713 Ts~~gVfA~GD~~~-g-~-~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 713 SSIPGIYAGGDIVR-G-G-ATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCCCEEEeCCccC-C-c-HHHHHHHHHHHHHHHHHHHHhc
Confidence 45689999999774 2 3 4677899999999999988774
No 290
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=60.82 E-value=28 Score=38.63 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHhc----CcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTR----GCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~----G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~ 219 (444)
.+...|.+.+.+. ++++..++.+.++..++ |+|.+|.. +|+ .+.|+.||+||...
T Consensus 140 ~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 204 (897)
T PRK13800 140 DVKKALYRVLRQRSMRERIRIENRLMPVRVLTEG--GRAVGAAALNTRTGEFVTVGAKAVILATGPC 204 (897)
T ss_pred hHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC--CEEEEEEEEecCCCcEEEEECCEEEECCCcc
Confidence 4667777766544 45676777777887665 77887764 254 47899999999864
No 291
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=60.81 E-value=14 Score=37.69 Aligned_cols=66 Identities=21% Similarity=0.173 Sum_probs=35.2
Q ss_pred HHHHHHhhccCCCCCeeeeEEEEEeCCCc-cccCCCCCCCCCCCCC-CCCCEEEeecccccCCCcchhhHHHHHHHHH
Q 013390 318 AVSYLSKCIKDFSTATVMDHKIRRFPKSL-THFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWSQERSYVTGLEA 393 (444)
Q Consensus 318 ~l~~l~~~~p~~~~~~~~~~~v~r~~~~~-~~~~pg~~~~~p~~~~-~~~~l~laGd~~~~~~~~~~~egAv~SG~~a 393 (444)
+..++-+..|++..+. +.|+.+++ +.|.... ...|.+.+ -++||||||.--++ .+-|.|...|..|
T Consensus 317 VQ~~~irsipGlEna~-----i~rpgYAIEYD~v~p~-qL~~tLEtK~I~GLf~AGQINGT----tGYEEAAaQGliA 384 (621)
T COG0445 317 VQEQIIRSIPGLENAE-----ILRPGYAIEYDYVDPR-QLKPTLETKKIKGLFFAGQINGT----TGYEEAAAQGLIA 384 (621)
T ss_pred HHHHHHHhCcccccce-----eeccceeeeecccChh-hcccchhhceecceEEcccccCC----chhHHHHhhhHHH
Confidence 4556677788886543 34444443 2222211 12244443 57999999986543 2345555544433
No 292
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=60.59 E-value=14 Score=41.23 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=32.8
Q ss_pred CCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 361 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 361 ~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
++..+|||.+||... .| .++..|+..|+.||..|+...+.
T Consensus 802 ~Ts~pgVFAaGD~a~--GP-~tVv~AIaqGr~AA~nIl~~~~~ 841 (1012)
T TIGR03315 802 ETNITNVFVIGDANR--GP-ATIVEAIADGRKAANAILSREGL 841 (1012)
T ss_pred ccCCCCEEEEeCcCC--Cc-cHHHHHHHHHHHHHHHHhccccC
Confidence 467899999999764 25 57888999999999999876554
No 293
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=60.31 E-value=27 Score=33.91 Aligned_cols=36 Identities=31% Similarity=0.426 Sum_probs=25.0
Q ss_pred CCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHh
Q 013390 363 SFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 363 ~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~l 401 (444)
..+++|.+||.+. .+ ..+..|+..|..||+.|.+.|
T Consensus 314 ~~~~vyaiGD~~~--~~-~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 314 SREGVFAAGDVVT--GP-SKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred CCCCEEEEccccc--Cc-chHHHHHHHHHHHHHHHHHHH
Confidence 3577888888654 23 356677888888888877665
No 294
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=59.84 E-value=9 Score=34.29 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=29.6
Q ss_pred CCCCCEEEeeccccc--CCCc--chhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITT--RHGS--WSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~--~~~~--~~~egAv~SG~~aA~~il~~lg 402 (444)
.-.||||.||..+.. |.|- -..-|=+.||+.||+.|+++|.
T Consensus 216 eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 216 EVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred cccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhh
Confidence 346999999987643 3221 2344557899999999999985
No 295
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=59.66 E-value=16 Score=35.50 Aligned_cols=52 Identities=19% Similarity=0.105 Sum_probs=31.3
Q ss_pred HHHHHHhcCcEEEcCceeeEEEe--cCCCCeEEE--EEeCCeEEecCEEEEccChh
Q 013390 168 WMDSMRTRGCEFLDGRRVTDFIY--DEERCCISD--VVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 168 l~~~l~~~G~~v~~~~~V~~I~~--~~~~g~v~~--v~~~g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.|+++++++.|..+.. +.+.+.+.. +..++..+.+|+||+|+...
T Consensus 74 ~~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 74 GVKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW 129 (352)
T ss_pred HHHHHHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence 34555667899999999977643 111011110 11122346899999999973
No 296
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=59.57 E-value=37 Score=30.57 Aligned_cols=56 Identities=25% Similarity=0.271 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-------C-----eEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K-----ETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-------g-----~~~~ad~VI~a~p~~~ 220 (444)
++..|+...-+.|.+|..++.|..|...++ .+|.+|.+| + -+++|+.||-||..+.
T Consensus 111 ~~skl~~~a~~aGaki~n~~~veDvi~r~~-~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda 178 (262)
T COG1635 111 FASKLAARALDAGAKIFNGVSVEDVIVRDD-PRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDA 178 (262)
T ss_pred HHHHHHHHHHhcCceeeecceEEEEEEecC-CceEEEEEecchhhhcccccCcceeeEEEEEeCCCCch
Confidence 555566665578999999999999998874 268888764 1 2678999999998764
No 297
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=59.53 E-value=15 Score=37.44 Aligned_cols=40 Identities=33% Similarity=0.272 Sum_probs=32.6
Q ss_pred CCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 361 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 361 ~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
+|..+|+|.+||.+. + + ..+..|+..|+.||..|...|..
T Consensus 441 ~Ts~~gVfAaGD~~~-g-~-~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 441 STSIPGVFAAGDCRR-G-Q-SLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred eECCCCEEEeeccCC-C-c-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999764 2 3 45677999999999999999853
No 298
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=59.33 E-value=15 Score=38.72 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
++..-..+.+++|+++++|.+|.+|..++ . . |+++ |.++.+|.+|+|+.-..
T Consensus 61 i~l~~~dwy~~~~i~L~~~~~v~~idr~~--k-~--V~t~~g~~~~YDkLilATGS~p 113 (793)
T COG1251 61 ISLNRNDWYEENGITLYTGEKVIQIDRAN--K-V--VTTDAGRTVSYDKLIIATGSYP 113 (793)
T ss_pred HhccchhhHHHcCcEEEcCCeeEEeccCc--c-e--EEccCCcEeecceeEEecCccc
Confidence 33333456789999999999999999876 3 2 4555 88999999999997543
No 299
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=59.25 E-value=37 Score=36.10 Aligned_cols=54 Identities=4% Similarity=-0.013 Sum_probs=37.9
Q ss_pred hHHHHHHHH-HhcCcEEEcCceeeEEEecCCCCe-EEEEEe-C-------C--------eEEecCEEEEccChh
Q 013390 164 IFEPWMDSM-RTRGCEFLDGRRVTDFIYDEERCC-ISDVVC-G-------K--------ETYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l-~~~G~~v~~~~~V~~I~~~~~~g~-v~~v~~-~-------g--------~~~~ad~VI~a~p~~ 219 (444)
+.+.+.+.+ ++.|++|++++.|++|..+++ +. +. +.+ + + +++++|.||+|+...
T Consensus 355 is~~l~~~ll~~~GV~I~~~~~V~~I~~~~~-~~~v~-v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 355 VAKYFERVFLKSKPVRVHLNTLIEYVRAGKG-NQPVI-IGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRK 426 (659)
T ss_pred HHHHHHHHHhhcCCcEEEcCCEEEEEEecCC-ceEEE-EEEeccccccccccccccccceEEEcCEEEEEECcc
Confidence 555566654 568999999999999987542 22 43 322 1 1 268999999999864
No 300
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=58.82 E-value=37 Score=30.47 Aligned_cols=56 Identities=21% Similarity=0.209 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-------C-----eEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K-----ETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-------g-----~~~~ad~VI~a~p~~~ 220 (444)
++..|....-+.|++|...+.|..+...++ ++|.+|..+ | -+++|+.||-||..+.
T Consensus 98 ~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 98 FTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp HHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred HHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 555655555568999999999999998875 689888764 2 2789999999997653
No 301
>PRK13984 putative oxidoreductase; Provisional
Probab=57.89 E-value=26 Score=36.87 Aligned_cols=37 Identities=32% Similarity=0.368 Sum_probs=28.4
Q ss_pred CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
|+.+++|.+||-+. .+ .+-.|+..|+.||..|...|.
T Consensus 566 Ts~~gVfAaGD~~~--~~--~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 566 TSIPWLFAGGDIVH--GP--DIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred cCCCCEEEecCcCC--ch--HHHHHHHHHHHHHHHHHHHhc
Confidence 45789999999774 23 345689999999999988774
No 302
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=57.80 E-value=26 Score=36.08 Aligned_cols=51 Identities=12% Similarity=0.215 Sum_probs=36.4
Q ss_pred HHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChh
Q 013390 167 PWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 167 ~l~~~l~~-~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+ .|++|++++.|.+|..++ ++++++.+ ++ +++.+|.|++++...
T Consensus 391 ~l~~~l~~~~gI~i~~~~~v~~i~~~~--g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 391 VLQDKLRSLPNVTIITNAQTTEVTGDG--DKVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred HHHHHHhcCCCcEEEECcEEEEEEcCC--CcEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 34445554 589999999999998764 55665553 23 358899999888764
No 303
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=57.55 E-value=25 Score=35.44 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=29.3
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|.+||.+. +. ....-|...|+.+|+.|+.
T Consensus 289 ~~Ts~~~IyA~GD~~~-~~--~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 289 SRTSIPSIYAVGDVTD-RI--NLTPVAIMEATCFANTEFG 325 (446)
T ss_pred CccCCCCEEEeeccCC-Cc--cchhHHHHHHHHHHHHHhc
Confidence 4567899999999885 23 3566799999999998874
No 304
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=57.40 E-value=17 Score=40.78 Aligned_cols=41 Identities=29% Similarity=0.394 Sum_probs=34.1
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
.+|+++|||.+||.+. + + .++-.|+..|+.||..|...+..
T Consensus 716 ~~Ts~pgVFAaGDv~~-G-~-~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 716 QSTNLPGVFAGGDIVT-G-G-ATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred cCCCCCCEEEecCcCC-C-c-cHHHHHHHHHHHHHHHHHHHHhc
Confidence 3578899999999874 2 3 47788999999999999999864
No 305
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=57.28 E-value=16 Score=38.13 Aligned_cols=40 Identities=25% Similarity=0.422 Sum_probs=33.3
Q ss_pred CCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 361 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 361 ~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
.+..+|+|.+||.+. + + .++..|+..|+.||..|...+..
T Consensus 406 ~ts~~~Vfa~GD~~~-g-~-~~v~~Av~~G~~aA~~i~~~L~g 445 (564)
T PRK12771 406 MTGRPGVFAGGDMVP-G-P-RTVTTAIGHGKKAARNIDAFLGG 445 (564)
T ss_pred cCCCCCEEeccCcCC-C-c-hHHHHHHHHHHHHHHHHHHHHcC
Confidence 467899999999774 2 4 57788999999999999998864
No 306
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=56.82 E-value=14 Score=40.99 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=33.6
Q ss_pred CCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 361 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 361 ~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
+|..+|||-+||.+. + + ..+--|+..|+.||..|...|+-
T Consensus 589 ~Ts~pgVFAaGD~~~-G-~-~~vv~Ai~eGr~AA~~I~~~L~~ 628 (944)
T PRK12779 589 RTSIKGVYSGGDAAR-G-G-STAIRAAGDGQAAAKEIVGEIPF 628 (944)
T ss_pred ccCCCCEEEEEcCCC-C-h-HHHHHHHHHHHHHHHHHHHHhcc
Confidence 467899999999875 2 3 47788999999999999998874
No 307
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=56.46 E-value=15 Score=35.94 Aligned_cols=40 Identities=20% Similarity=0.474 Sum_probs=29.0
Q ss_pred CCCCCEEEeecccc-cCCCc-chhhHHHHHHHHHHHHHHHHh
Q 013390 362 TSFPNLFMAGDWIT-TRHGS-WSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 362 ~~~~~l~laGd~~~-~~~~~-~~~egAv~SG~~aA~~il~~l 401 (444)
..+|||||||+-+. ++|-+ =.+.-|..||+.|++.+.+.+
T Consensus 366 k~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 366 KKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred hcCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 35799999997654 23332 245678999999999887654
No 308
>PRK13984 putative oxidoreductase; Provisional
Probab=56.15 E-value=17 Score=38.23 Aligned_cols=46 Identities=15% Similarity=0.110 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
+++...+.+++.|+++++|+.|..- .+ .+.....+|+||+|++...
T Consensus 335 ~~~~~~~~~~~~gv~~~~~~~v~~~-~~----------~~~~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 335 ALDKDIAFIEALGVKIHLNTRVGKD-IP----------LEELREKHDAVFLSTGFTL 380 (604)
T ss_pred HHHHHHHHHHHCCcEEECCCEeCCc-CC----------HHHHHhcCCEEEEEcCcCC
Confidence 3344445667778888888777321 00 0111246999999999753
No 309
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=55.99 E-value=16 Score=37.03 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
.+.+...+.+++.|+++++++.|... + .+++....+|+||+|+...
T Consensus 191 ~~~~~~~~~l~~~gv~~~~~~~v~~~--------v---~~~~~~~~~d~vvlAtGa~ 236 (457)
T PRK11749 191 DIVDREVERLLKLGVEIRTNTEVGRD--------I---TLDELRAGYDAVFIGTGAG 236 (457)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEECCc--------c---CHHHHHhhCCEEEEccCCC
Confidence 35666677788889999999987321 1 1122226799999999975
No 310
>PLN02661 Putative thiazole synthesis
Probab=55.96 E-value=14 Score=35.77 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=30.4
Q ss_pred CCCCEEEeeccccc--CCCc--chhhHHHHHHHHHHHHHHHHhCC
Q 013390 363 SFPNLFMAGDWITT--RHGS--WSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 363 ~~~~l~laGd~~~~--~~~~--~~~egAv~SG~~aA~~il~~lg~ 403 (444)
=+||||.+|..+.. |.|- -..-|=+.||++||+.|+++|+.
T Consensus 285 v~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 285 VVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred ccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence 36999999988753 3221 23445578999999999999974
No 311
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=55.90 E-value=15 Score=38.93 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~ 221 (444)
+++...+.+++.|+++++|+.|.. + + ........+|+||+|+.....
T Consensus 362 ~~~~~~~~~~~~Gv~~~~~~~v~~---~-----~---~~~~l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 362 VLSQRREIFTAMGIDFHLNCEIGR---D-----I---TFSDLTSEYDAVFIGVGTYGM 408 (639)
T ss_pred HHHHHHHHHHHCCeEEEcCCccCC---c-----C---CHHHHHhcCCEEEEeCCCCCC
Confidence 444455667778888888887631 0 1 111112358999999987543
No 312
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=55.85 E-value=38 Score=38.02 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=39.7
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-----CCeEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-----GKETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-----~g~~~~ad~VI~a~p~~~ 220 (444)
+...+.+.+++.|++|++++.|.+|.-++ ++.+|.. +++++.+|.|+++++...
T Consensus 353 ~~~~l~~~L~~~GV~i~~~~~v~~i~g~~---~v~~V~l~~~~g~~~~i~~D~V~va~G~~P 411 (985)
T TIGR01372 353 VSPEARAEARELGIEVLTGHVVAATEGGK---RVSGVAVARNGGAGQRLEADALAVSGGWTP 411 (985)
T ss_pred hhHHHHHHHHHcCCEEEcCCeEEEEecCC---cEEEEEEEecCCceEEEECCEEEEcCCcCc
Confidence 44556677888999999999999997543 3444432 246789999999987643
No 313
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=54.84 E-value=23 Score=35.42 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccCh
Q 013390 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI 218 (444)
Q Consensus 166 ~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~ 218 (444)
...-+.+++.|.++++++.|+++.... ..+ +..+|+++.+++.|+||.-
T Consensus 131 ~r~~e~Yke~gIe~~~~t~v~~~D~~~--K~l--~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 131 KRTPEFYKEKGIELILGTSVVKADLAS--KTL--VLGNGETLKYSKLIIATGS 179 (478)
T ss_pred ccChhhHhhcCceEEEcceeEEeeccc--cEE--EeCCCceeecceEEEeecC
Confidence 344456778999999999999999876 322 3445999999999999987
No 314
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=54.57 E-value=18 Score=35.53 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=29.2
Q ss_pred CCCCCEEEeeccccc-CCCc-chhhHHHHHHHHHHHHHHHHh
Q 013390 362 TSFPNLFMAGDWITT-RHGS-WSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 362 ~~~~~l~laGd~~~~-~~~~-~~~egAv~SG~~aA~~il~~l 401 (444)
.-+|||||||+-+.- |..+ =.+.-|..||+.|++.+...+
T Consensus 334 k~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 334 KARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred ccCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 357999999987652 2221 246789999999999887654
No 315
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=53.26 E-value=36 Score=38.23 Aligned_cols=49 Identities=14% Similarity=0.256 Sum_probs=36.3
Q ss_pred HHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC------------------C--eEEecCEEEEccChh
Q 013390 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------------K--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 170 ~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~------------------g--~~~~ad~VI~a~p~~ 219 (444)
+.+++.|++|++++.+.+|..+++ |+|++|.+. | .++.+|.||+|+...
T Consensus 617 ~~a~eeGI~~~~~~~p~~i~~~~~-G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~ 685 (1006)
T PRK12775 617 RHAKEEGIDFFFLHSPVEIYVDAE-GSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTK 685 (1006)
T ss_pred HHHHhCCCEEEecCCcEEEEeCCC-CeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcC
Confidence 345678999999999999986544 667665431 1 258999999999754
No 316
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=52.61 E-value=24 Score=39.25 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=33.4
Q ss_pred CCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 361 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 361 ~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
++..+|||.+||... .| .++..|+..|+.||+.|+...+.
T Consensus 804 qTs~pgVFAaGD~a~--Gp-~tvv~Ai~qGr~AA~nI~~~~~~ 843 (1019)
T PRK09853 804 ETSLTNVYMIGDVQR--GP-STIVAAIADARRAADAILSREGI 843 (1019)
T ss_pred ccCCCCEEEEecccc--Cc-hHHHHHHHHHHHHHHHHhhhcCC
Confidence 467899999999764 24 57888999999999999988764
No 317
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=51.85 E-value=24 Score=37.51 Aligned_cols=41 Identities=24% Similarity=0.222 Sum_probs=33.3
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
.++..+|+|.+||-+. + + ..+..|+..|+.||..|...+..
T Consensus 462 ~~Ts~pgVfA~GDv~~-g-~-~~v~~Ai~~G~~AA~~I~~~L~g 502 (652)
T PRK12814 462 LQTSVAGVFAGGDCVT-G-A-DIAINAVEQGKRAAHAIDLFLNG 502 (652)
T ss_pred CcCCCCCEEEcCCcCC-C-c-hHHHHHHHHHHHHHHHHHHHHcC
Confidence 3467899999999774 2 3 46678999999999999999864
No 318
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=51.52 E-value=14 Score=35.04 Aligned_cols=116 Identities=9% Similarity=-0.003 Sum_probs=74.6
Q ss_pred CccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCCCcc--eeeecCCcchhhHHHHHHHH
Q 013390 95 SITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFD--LVWCRGTLREKIFEPWMDSM 172 (444)
Q Consensus 95 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~--~~~~~gg~~~~l~~~l~~~l 172 (444)
-.++++=.-+. .++.++++|+.++..-.||.+|+++++....++=..+-..++--.+ -+.|++|.. .+++.| +
T Consensus 131 ~q~~ee~ais~-vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~GYT-~~~~kM---l 205 (374)
T COG0562 131 PQNLEEQAISL-VGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDGYT-AMFEKM---L 205 (374)
T ss_pred hhhhhhHHHHH-HHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCccccHH-HHHHHH---h
Confidence 34555555543 6788999999999999999999999987665442211101111111 256788843 344444 4
Q ss_pred HhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhc
Q 013390 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN 227 (444)
Q Consensus 173 ~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ll~~ 227 (444)
.....+|++||.-..|..... + +.+..||.+.|++..-.-..+
T Consensus 206 ~hp~I~V~Lntd~~~~~~~~~----------~--~~~~~VvytG~iD~~Fdy~~G 248 (374)
T COG0562 206 DHPNIDVRLNTDFFDVKDQLR----------A--IPFAPVVYTGPIDAYFDYCFG 248 (374)
T ss_pred cCCCceEEecCcHHHHhhhhc----------c--cCCCceEEecchHhhhccccc
Confidence 455789999998877764431 1 346699999999887654433
No 319
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=51.36 E-value=12 Score=35.70 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=35.6
Q ss_pred HHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCCCCCCCEEEeecccccCCCcchhhHHHHHHHHHH
Q 013390 321 YLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAA 394 (444)
Q Consensus 321 ~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA 394 (444)
.+-++.|++.+++++.+-+. .+.++...|..+..--. ...-+||+|||.-|+. - |++|+| .+|..|.
T Consensus 294 rVf~mIPgLeNAefvRyGvm--HRNtfinSP~lL~~tl~-lk~~p~l~fAGQitG~--E-GYveSa-A~Gllag 360 (439)
T COG1206 294 RVFRMIPGLENAEFVRYGVM--HRNTFINSPKLLDPTLQ-LKKRPNLFFAGQITGV--E-GYVESA-ASGLLAG 360 (439)
T ss_pred hhhhhcCCcchhhhhhccce--ecccccCChhhhhHHhh-cccCCCcEEeeeeecc--h-hhhHHh-hhhHHHh
Confidence 34567799887666655442 22333334432211001 1234899999998853 2 567654 3444444
No 320
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=50.70 E-value=17 Score=37.86 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=31.0
Q ss_pred CCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 361 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 361 ~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
++..+|+|.+||-+.... ..+..|+..|..||..|...+..
T Consensus 270 ~Ts~p~IyAaGDv~~~~~--~~v~~A~~~G~~Aa~~i~~~l~~ 310 (555)
T TIGR03143 270 ETNVPGVYAAGDLRPKEL--RQVVTAVADGAIAATSAERYVKE 310 (555)
T ss_pred ccCCCCEEEceeccCCCc--chheeHHhhHHHHHHHHHHHHHh
Confidence 456799999999764322 24566999999999999877743
No 321
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=50.05 E-value=24 Score=38.30 Aligned_cols=45 Identities=18% Similarity=0.215 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
+++...+.+++.|++|++|+.|. ..+ +++ .....+|+||+|+..+
T Consensus 483 ~~~~~~~~l~~~gv~~~~~~~v~--------~~v---~~~~l~~~~ydavvlAtGa~ 528 (752)
T PRK12778 483 IVDVEIENLKKLGVKFETDVIVG--------KTI---TIEELEEEGFKGIFIASGAG 528 (752)
T ss_pred HHHHHHHHHHHCCCEEECCCEEC--------CcC---CHHHHhhcCCCEEEEeCCCC
Confidence 45555566778889999887652 112 222 2345689999999985
No 322
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=47.51 E-value=65 Score=31.72 Aligned_cols=62 Identities=10% Similarity=-0.023 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccChhh-HHHhhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
.+...|.+.+.+.|+++++++.+.++...++ ..+. |+. +|+ +++||.||-|=..+. +.+.++
T Consensus 104 ~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~-~~~~-V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~ 170 (390)
T TIGR02360 104 EVTRDLMEAREAAGLTTVYDADDVRLHDLAG-DRPY-VTFERDGERHRLDCDFIAGCDGFHGVSRASIP 170 (390)
T ss_pred HHHHHHHHHHHhcCCeEEEeeeeEEEEecCC-CccE-EEEEECCeEEEEEeCEEEECCCCchhhHHhcC
Confidence 3566677777777899999999888865332 2233 333 554 689999999988864 455543
No 323
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=47.15 E-value=25 Score=39.42 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=32.1
Q ss_pred CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 362 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
+.++++|.|||.+. . ..+..|+.+|..||..++..+|+
T Consensus 436 t~v~gVyaaGD~~g--~--~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 436 DAVQGCILAGAANG--L--FGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred CCCCCeEEeeccCC--c--cCHHHHHHHHHHHHHHHHHHcCC
Confidence 45799999999773 3 35777999999999999999986
No 324
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=46.97 E-value=25 Score=36.79 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=31.9
Q ss_pred CCCCCEEEeeccccc----CCCc--chhhHHHHHHHHHHHHHHHHhCC
Q 013390 362 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 362 ~~~~~l~laGd~~~~----~~~~--~~~egAv~SG~~aA~~il~~lg~ 403 (444)
++++|||-||..+.. .|++ .++-.|+.+|+.|++.+.+..+.
T Consensus 522 ~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~ 569 (574)
T PRK12842 522 TPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAGG 569 (574)
T ss_pred CCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhcc
Confidence 589999999976532 2331 35778999999999999887653
No 325
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=45.93 E-value=3e+02 Score=26.91 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
+-+.+.+.+ +..|++++.|.+| +. ++|+ + .+|++++||.||-|.+++
T Consensus 91 f~~~l~~~l---~~~i~~~~~V~~v--~~--~~v~-l-~dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 91 FHEGLLQAF---PEGVILGRKAVGL--DA--DGVD-L-APGTRINARSVIDCRGFK 137 (370)
T ss_pred HHHHHHHhh---cccEEecCEEEEE--eC--CEEE-E-CCCCEEEeeEEEECCCCC
Confidence 444444433 3338889999998 33 3354 3 568899999999999976
No 326
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=45.82 E-value=56 Score=33.06 Aligned_cols=61 Identities=25% Similarity=0.367 Sum_probs=45.9
Q ss_pred cCCcchhhHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEeC---C--eEEecCEEEEccCh
Q 013390 157 RGTLREKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGI 218 (444)
Q Consensus 157 ~gg~~~~l~~~l~~~l~~-~G~~v~~~~~V~~I~~~~~~g~v~~v~~~---g--~~~~ad~VI~a~p~ 218 (444)
.+.-+..+...|.+.+++ .+++|+-++.+.+|..+++ ..+.+|.+. + .++.|++||+|+.-
T Consensus 128 ~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~-~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 128 ADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDG-IGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred cCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCC-ceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 343345688888888765 5889999999999998873 245577663 2 46789999999975
No 327
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=45.46 E-value=29 Score=36.17 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=31.3
Q ss_pred CCCCCEEEeeccccc----CCC--cchhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITT----RHG--SWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~----~~~--~~~~egAv~SG~~aA~~il~~lg 402 (444)
.+|+|||-||..+.. .|+ +.++-.|+.+|+.|++.+.+...
T Consensus 505 ~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~ 551 (557)
T PRK12844 505 SVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGARS 551 (557)
T ss_pred CCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhccC
Confidence 589999999986531 233 14677899999999999977654
No 328
>PRK06116 glutathione reductase; Validated
Probab=44.95 E-value=32 Score=34.62 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=29.3
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|.+||.+. +. ....-|+..|+.+|+.|+.
T Consensus 291 ~~Ts~~~IyA~GD~~~-~~--~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 291 QNTNVPGIYAVGDVTG-RV--ELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CCcCCCCEEEEeecCC-Cc--CcHHHHHHHHHHHHHHHhC
Confidence 3567899999999874 23 3567899999999999874
No 329
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=44.68 E-value=34 Score=34.55 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=29.6
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|.+||.+. . + ....-|+..|+.+|+.|+.
T Consensus 291 ~~T~~p~IyAiGD~~~-~-~-~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 291 QNTNVPGIYALGDVVG-K-V-ELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred CcCCCCCEEEEEecCC-C-c-ccHHHHHHHHHHHHHHHhc
Confidence 4567899999999885 2 3 3567899999999999874
No 330
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=44.45 E-value=66 Score=33.94 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=31.2
Q ss_pred CCCCCCCCEEEeecccccCCC-----cchhhHHHHHHHHHHHHHHHHh
Q 013390 359 RGFTSFPNLFMAGDWITTRHG-----SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 359 ~~~~~~~~l~laGd~~~~~~~-----~~~~egAv~SG~~aA~~il~~l 401 (444)
..+|.++|||-||+.....|+ +.++-+|+..|+.|++.+.+..
T Consensus 378 ~~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~ 425 (603)
T TIGR01811 378 DQMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPNY 425 (603)
T ss_pred CCcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999996432232 1356678999999999887764
No 331
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=44.35 E-value=2.8e+02 Score=26.23 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEeC-----CeEEecCEEEEccChhhHH
Q 013390 163 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-----KETYSAGAVVLAVGISTLQ 222 (444)
Q Consensus 163 ~l~~~l~~~l~~~G-~~v~~~~~V~~I~~~~~~g~v~~v~~~-----g~~~~ad~VI~a~p~~~~~ 222 (444)
.+...|.+.+++.| +++.++. |.++..+. +++..|... ......+++|+++.||.-+
T Consensus 148 lFc~~i~sea~k~~~V~lv~Gk-v~ev~dEk--~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTsk 210 (380)
T KOG2852|consen 148 LFCHFILSEAEKRGGVKLVFGK-VKEVSDEK--HRINSVPKAEAEDTIIKADVHKIVVSAGPWTSK 210 (380)
T ss_pred HHHHHHHHHHHhhcCeEEEEee-eEEeeccc--ccccccchhhhcCceEEeeeeEEEEecCCCchh
Confidence 47777777777665 7888864 66676443 555544433 2355788999999999765
No 332
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=44.29 E-value=30 Score=36.18 Aligned_cols=41 Identities=27% Similarity=0.307 Sum_probs=30.7
Q ss_pred CCCCCEEEeeccccc-CCCc-----chhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~-~~~~-----~~~egAv~SG~~aA~~il~~lg 402 (444)
++++|||-||+.+.+ .++. .++-+|+.+|++|++.+.+...
T Consensus 351 t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~~ 397 (565)
T TIGR01816 351 QIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAK 397 (565)
T ss_pred CccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 689999999997642 2321 2566789999999999887654
No 333
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=44.29 E-value=29 Score=36.00 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=31.1
Q ss_pred CCCCCCCEEEeecccccCCC-----cchhhHHHHHHHHHHHHHHHHh
Q 013390 360 GFTSFPNLFMAGDWITTRHG-----SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~-----~~~~egAv~SG~~aA~~il~~l 401 (444)
.+++++|||-||+.+..-|+ +.++-.|+.+|+.|++.+.+..
T Consensus 357 ~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~ 403 (543)
T PRK06263 357 CETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNA 403 (543)
T ss_pred CcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHh
Confidence 34799999999996532222 1345678999999999998765
No 334
>PTZ00367 squalene epoxidase; Provisional
Probab=43.71 E-value=4.1e+02 Score=27.85 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=28.6
Q ss_pred CCCEEEeecccccCCCc--chhhHHHHHHHHHHHHHHH
Q 013390 364 FPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 364 ~~~l~laGd~~~~~~~~--~~~egAv~SG~~aA~~il~ 399 (444)
.+++.+.||..+.-+|. .+|.-|++.+...|+.+..
T Consensus 336 ~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~ 373 (567)
T PTZ00367 336 IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTG 373 (567)
T ss_pred CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHh
Confidence 46899999998876663 7788888888888887754
No 335
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=41.87 E-value=50 Score=32.66 Aligned_cols=64 Identities=17% Similarity=0.314 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC--C--------------eEEecCEEEEccChh--hHHHhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--K--------------ETYSAGAVVLAVGIS--TLQELI 225 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~--g--------------~~~~ad~VI~a~p~~--~~~~ll 225 (444)
++.-|.+..++.|++|.-+..+.++.++.+ |.|.+|.++ | -.+.|+.-|+|-.-+ ...+++
T Consensus 185 ~v~wLg~kAEe~GvEiyPg~aaSevly~ed-gsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~ 263 (621)
T KOG2415|consen 185 LVRWLGEKAEELGVEIYPGFAASEVLYDED-GSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQII 263 (621)
T ss_pred HHHHHHHHHHhhCceeccccchhheeEcCC-CcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHH
Confidence 778888888999999999999999999987 789888773 1 146788888887653 344555
Q ss_pred hcc
Q 013390 226 KNS 228 (444)
Q Consensus 226 ~~~ 228 (444)
...
T Consensus 264 kkf 266 (621)
T KOG2415|consen 264 KKF 266 (621)
T ss_pred HHh
Confidence 443
No 336
>PRK12839 hypothetical protein; Provisional
Probab=41.78 E-value=31 Score=36.07 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=31.4
Q ss_pred CCCCCEEEeeccccc----CCC--cchhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITT----RHG--SWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~----~~~--~~~~egAv~SG~~aA~~il~~lg 402 (444)
++|+|||-||..+.. .|+ +.++-.|+.+|+.|++.+.+.-|
T Consensus 523 ~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~~ 569 (572)
T PRK12839 523 TPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGSTG 569 (572)
T ss_pred CCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhccc
Confidence 589999999986432 343 24677899999999999987655
No 337
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=41.68 E-value=35 Score=35.79 Aligned_cols=44 Identities=25% Similarity=0.254 Sum_probs=32.0
Q ss_pred CCCCCCCCEEEeecccccC-CC-----cchhhHHHHHHHHHHHHHHHHhC
Q 013390 359 RGFTSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 359 ~~~~~~~~l~laGd~~~~~-~~-----~~~~egAv~SG~~aA~~il~~lg 402 (444)
..+++++|||-||+...++ |+ +.++-.|+..|+.|++.+.+...
T Consensus 366 ~~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 415 (582)
T PRK09231 366 NCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAA 415 (582)
T ss_pred CCccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Confidence 3457899999999965322 22 13567789999999999887653
No 338
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=41.08 E-value=35 Score=35.92 Aligned_cols=41 Identities=29% Similarity=0.311 Sum_probs=30.8
Q ss_pred CCCCCEEEeecccccC-CC-----cchhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~-~~-----~~~~egAv~SG~~aA~~il~~lg 402 (444)
++++|||-||+.+.++ |+ +.++-.|+..|++|++.+.+.+.
T Consensus 383 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 429 (598)
T PRK09078 383 AVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVIK 429 (598)
T ss_pred CccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHhhh
Confidence 5799999999975422 22 13567899999999999887653
No 339
>PRK06175 L-aspartate oxidase; Provisional
Probab=40.72 E-value=87 Score=31.42 Aligned_cols=43 Identities=28% Similarity=0.278 Sum_probs=31.4
Q ss_pred CCCCCCCCEEEeeccccc-CCC-----cchhhHHHHHHHHHHHHHHHHh
Q 013390 359 RGFTSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 359 ~~~~~~~~l~laGd~~~~-~~~-----~~~~egAv~SG~~aA~~il~~l 401 (444)
..++++||||-||+-+.+ -|+ +.++-.++..|++|++.+....
T Consensus 339 ~~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~ 387 (433)
T PRK06175 339 NSKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEI 387 (433)
T ss_pred CccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 334799999999997532 121 1456778999999999987655
No 340
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=40.51 E-value=46 Score=34.58 Aligned_cols=53 Identities=26% Similarity=0.350 Sum_probs=38.2
Q ss_pred HHhcCcEEEcCceeeEEEecCCCCeEEEEEe--C-C---e-EEecCEEEEccChhhHHHhhh
Q 013390 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G-K---E-TYSAGAVVLAVGISTLQELIK 226 (444)
Q Consensus 172 l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~-g---~-~~~ad~VI~a~p~~~~~~ll~ 226 (444)
.+....+|++++.|++|..++ +++++|.. + + + .+.++.||++...-...+|+-
T Consensus 213 ~~~~nl~v~t~a~v~ri~~~~--~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~ 272 (542)
T COG2303 213 LKRPNLTLLTGARVRRILLEG--DRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLL 272 (542)
T ss_pred hcCCceEEecCCEEEEEEEEC--CeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHH
Confidence 344458999999999999998 56766655 2 2 2 246789999988766655543
No 341
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=40.28 E-value=39 Score=34.48 Aligned_cols=43 Identities=33% Similarity=0.383 Sum_probs=31.5
Q ss_pred CCCCCCCCEEEeeccccc-CCC-----cchhhHHHHHHHHHHHHHHHHh
Q 013390 359 RGFTSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 359 ~~~~~~~~l~laGd~~~~-~~~-----~~~~egAv~SG~~aA~~il~~l 401 (444)
..+++++|||-||+...+ .|+ +.++-.|+..|++|++.+.+..
T Consensus 341 ~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 389 (488)
T TIGR00551 341 HGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRRP 389 (488)
T ss_pred CCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 345789999999997532 121 1456778999999999987654
No 342
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=40.04 E-value=45 Score=34.87 Aligned_cols=42 Identities=31% Similarity=0.358 Sum_probs=31.3
Q ss_pred CCC-CCCEEEeecccccC-CC-----cchhhHHHHHHHHHHHHHHHHhC
Q 013390 361 FTS-FPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 361 ~~~-~~~l~laGd~~~~~-~~-----~~~~egAv~SG~~aA~~il~~lg 402 (444)
+++ ++|||-||+.+.++ |+ +.++-+|+..|++|++.+.+.+.
T Consensus 356 ~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 404 (566)
T PRK06452 356 RNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLK 404 (566)
T ss_pred CcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 465 99999999976432 22 12577899999999999887653
No 343
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=39.46 E-value=77 Score=32.12 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=29.0
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|.+||.+. .++ ...-|...|..||..++.
T Consensus 300 ~~Ts~~~IyA~GD~~~-~~~--l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 300 SRTSVPGIYAAGDCTG-VLP--LASVAAMQGRIAMYHALG 336 (466)
T ss_pred cccCCCCEEEEeeccC-Ccc--chhHHHHHHHHHHHHHcC
Confidence 4567899999999875 233 567789999999988874
No 344
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=39.44 E-value=38 Score=34.20 Aligned_cols=37 Identities=27% Similarity=0.250 Sum_probs=29.3
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|.+||.+. .+ .....|+..|..||+.|+.
T Consensus 298 ~~t~~~~IyAiGD~~~--~~-~~~~~A~~~g~~aa~~i~g 334 (461)
T PRK05249 298 YQTAVPHIYAVGDVIG--FP-SLASASMDQGRIAAQHAVG 334 (461)
T ss_pred cccCCCCEEEeeecCC--Cc-ccHhHHHHHHHHHHHHHcC
Confidence 3467899999999773 34 4567799999999999873
No 345
>PRK07121 hypothetical protein; Validated
Probab=39.20 E-value=35 Score=34.85 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=29.6
Q ss_pred CCCCCEEEeeccccc----CC-CcchhhHHHHHHHHHHHHHHHHh
Q 013390 362 TSFPNLFMAGDWITT----RH-GSWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 362 ~~~~~l~laGd~~~~----~~-~~~~~egAv~SG~~aA~~il~~l 401 (444)
.+++|||-||..+.. .| ++.++-.|+.+|+.|++.+.+.-
T Consensus 447 ~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~~ 491 (492)
T PRK07121 447 APIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAARA 491 (492)
T ss_pred CCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhhc
Confidence 589999999986532 12 12567779999999999887653
No 346
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=39.07 E-value=97 Score=32.31 Aligned_cols=47 Identities=28% Similarity=0.207 Sum_probs=33.1
Q ss_pred HHhcCcEEEcCceeeEEEecCCCCeEEEEEe-----------------CC--eEEecCEEEEccChhh
Q 013390 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC-----------------GK--ETYSAGAVVLAVGIST 220 (444)
Q Consensus 172 l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-----------------~g--~~~~ad~VI~a~p~~~ 220 (444)
..+.|++|++++.+.+|..+++ +.+ ++.+ .| .++.+|.||+|++...
T Consensus 315 a~~~GVki~~~~~~~~i~~~~~-~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p 380 (564)
T PRK12771 315 ALREGVEINWLRTPVEIEGDEN-GAT-GLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDI 380 (564)
T ss_pred HHHcCCEEEecCCcEEEEcCCC-CEE-EEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCC
Confidence 3467999999999999986553 432 3221 11 3689999999998643
No 347
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=38.16 E-value=47 Score=35.26 Aligned_cols=41 Identities=32% Similarity=0.350 Sum_probs=30.8
Q ss_pred CCCCCEEEeeccccc-CCCc-----chhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~-~~~~-----~~~egAv~SG~~aA~~il~~lg 402 (444)
++++|||-||+.+.+ .|+. .++-.|+..|++|++.+.+...
T Consensus 421 t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~~ 467 (635)
T PLN00128 421 AVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIAK 467 (635)
T ss_pred CccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 579999999997532 2321 2567789999999999887654
No 348
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=38.15 E-value=35 Score=35.66 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=28.9
Q ss_pred CCCCCEEEeeccccc----CCCc--chhhHHHHHHHHHHHHHHH
Q 013390 362 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 362 ~~~~~l~laGd~~~~----~~~~--~~~egAv~SG~~aA~~il~ 399 (444)
.+++|||-||..+.. .|++ .++-.|+.+|+.|++.+.+
T Consensus 520 ~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 520 SVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred CCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 589999999976532 3431 3678899999999998754
No 349
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=38.15 E-value=96 Score=34.67 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=33.4
Q ss_pred HhcCcEEEcCceeeEEEecCCCCeEEEEEe------------------CC--eEEecCEEEEccChh
Q 013390 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVC------------------GK--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 173 ~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~------------------~g--~~~~ad~VI~a~p~~ 219 (444)
.+.|+++++++.+++|..++++++|+++.+ .| .++.||.||+|+...
T Consensus 495 ~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~ 561 (944)
T PRK12779 495 LEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNT 561 (944)
T ss_pred HHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcC
Confidence 467999999999999976532235654432 12 358999999999854
No 350
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=37.85 E-value=47 Score=34.89 Aligned_cols=42 Identities=31% Similarity=0.481 Sum_probs=30.7
Q ss_pred CCCCCCCEEEeecccccCCC-----cchhhHHHHHHHHHHHHHHHHh
Q 013390 360 GFTSFPNLFMAGDWITTRHG-----SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~-----~~~~egAv~SG~~aA~~il~~l 401 (444)
..++++|||-||+.+...|+ +.++-.|+..|+.|++.+.+..
T Consensus 364 ~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~ 410 (589)
T PRK08641 364 QMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYI 410 (589)
T ss_pred CCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 45789999999996532222 1346678999999999887664
No 351
>PRK14727 putative mercuric reductase; Provisional
Probab=37.80 E-value=40 Score=34.34 Aligned_cols=37 Identities=22% Similarity=0.131 Sum_probs=29.5
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|||-+||.+. .+ ..+.-|+..|+.||+.|+.
T Consensus 309 ~~Ts~~~IyA~GD~~~--~~-~~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 309 METSAPDIYAAGDCSD--LP-QFVYVAAAAGSRAGINMTG 345 (479)
T ss_pred eecCCCCEEEeeecCC--cc-hhhhHHHHHHHHHHHHHcC
Confidence 4567899999999874 34 4567789999999998874
No 352
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=37.71 E-value=50 Score=34.45 Aligned_cols=40 Identities=30% Similarity=0.321 Sum_probs=30.6
Q ss_pred CCCCCEEEeeccccc-CCC-----cchhhHHHHHHHHHHHHHHHHh
Q 013390 362 TSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 362 ~~~~~l~laGd~~~~-~~~-----~~~~egAv~SG~~aA~~il~~l 401 (444)
++++|||-||+-+.+ .++ +.++-+|+.+|++|++.+.+.+
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~ 402 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYA 402 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 789999999996542 232 1356778999999999988765
No 353
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=37.65 E-value=53 Score=34.43 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=32.2
Q ss_pred CCCCCCCCEEEeecccccC-CCc-----chhhHHHHHHHHHHHHHHHHhC
Q 013390 359 RGFTSFPNLFMAGDWITTR-HGS-----WSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 359 ~~~~~~~~l~laGd~~~~~-~~~-----~~~egAv~SG~~aA~~il~~lg 402 (444)
..++++||||-||+....| |+. .++-+|+..|++|++.+.+...
T Consensus 365 ~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~~ 414 (580)
T TIGR01176 365 NCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERAA 414 (580)
T ss_pred CcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 3457899999999875322 321 3567789999999999887653
No 354
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=37.62 E-value=44 Score=35.07 Aligned_cols=40 Identities=30% Similarity=0.393 Sum_probs=30.1
Q ss_pred CCCCCEEEeecccccC-CC-----cchhhHHHHHHHHHHHHHHHHh
Q 013390 362 TSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~-~~-----~~~~egAv~SG~~aA~~il~~l 401 (444)
++++|||-||+-+.++ ++ +.++-.|+..|+.|++.+.+..
T Consensus 373 t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 418 (583)
T PRK08205 373 TVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYA 418 (583)
T ss_pred CCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 6799999999976422 22 1256778999999999987765
No 355
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=37.51 E-value=43 Score=35.17 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=30.7
Q ss_pred CCCCCEEEeeccccc----CCCc--chhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~----~~~~--~~~egAv~SG~~aA~~il~~lg 402 (444)
+|++|||-||+.+.. .|++ .++-.|+.+|+.|++.+.+...
T Consensus 525 ~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~~ 571 (584)
T PRK12835 525 SVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVVA 571 (584)
T ss_pred CCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhhh
Confidence 589999999976532 2332 2467789999999999987653
No 356
>PLN02785 Protein HOTHEAD
Probab=37.26 E-value=1.2e+02 Score=31.87 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=36.5
Q ss_pred HHhcCcEEEcCceeeEEEecCCC--CeEEEEEe---CCeEE-------ecCEEEEccChhhHHHhh
Q 013390 172 MRTRGCEFLDGRRVTDFIYDEER--CCISDVVC---GKETY-------SAGAVVLAVGISTLQELI 225 (444)
Q Consensus 172 l~~~G~~v~~~~~V~~I~~~~~~--g~v~~v~~---~g~~~-------~ad~VI~a~p~~~~~~ll 225 (444)
....+.+|.+++.|++|..++++ +++++|.. +|++. .++.||++...-...+|+
T Consensus 230 ~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL 295 (587)
T PLN02785 230 GNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQML 295 (587)
T ss_pred cCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHH
Confidence 33456899999999999997531 26888876 35432 236788888864454443
No 357
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=37.11 E-value=86 Score=30.09 Aligned_cols=53 Identities=26% Similarity=0.423 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHh---c-CcEEEcCceeeEEEecCCCCeEEEEEeC---------Ce----------EEecCEEEEccC
Q 013390 163 KIFEPWMDSMRT---R-GCEFLDGRRVTDFIYDEERCCISDVVCG---------KE----------TYSAGAVVLAVG 217 (444)
Q Consensus 163 ~l~~~l~~~l~~---~-G~~v~~~~~V~~I~~~~~~g~v~~v~~~---------g~----------~~~ad~VI~a~p 217 (444)
.+.++.++.+++ . -+++++.++|..+..++ |+|++|+-+ |+ ++.|.+||++..
T Consensus 150 gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~--grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SG 225 (552)
T COG3573 150 GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTG--GRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASG 225 (552)
T ss_pred chhhHHHHHHHHHHhCCceEEEeeeeccceEeeC--CeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecC
Confidence 367777777654 3 36899999999999998 778877420 21 467889999875
No 358
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=36.74 E-value=3e+02 Score=28.53 Aligned_cols=152 Identities=12% Similarity=0.107 Sum_probs=77.3
Q ss_pred eeeecCCcchh-hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChh--hHHH
Q 013390 153 LVWCRGTLREK-IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS--TLQE 223 (444)
Q Consensus 153 ~~~~~gg~~~~-l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~--~~~~ 223 (444)
+.|.+|-+.++ +.-.++=-..+.|..+.-..+|.++..+++ |+|.++.+ .|+ .+.|..||-|+.|- .+.+
T Consensus 214 ~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~-~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~ 292 (680)
T KOG0042|consen 214 MVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKD-GKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRK 292 (680)
T ss_pred EEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCC-CceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHh
Confidence 45666654432 222222223467888888889999999887 66656554 254 46789999999873 3444
Q ss_pred hhhccCCCChHHHHHhhcCCCccEEEEEEEeccCCCCCCCCceeeccCCC-cccceeeccccccccCCCCCeEEEEEEec
Q 013390 224 LIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS-LAWTFFDLNKIYDEHKDDSATVIQADFYH 302 (444)
Q Consensus 224 ll~~~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 302 (444)
+-.+. . .+ + -.+...+|+.+.+-.-++ .. +++.+... ....|| . | | .+.++...+=.+
T Consensus 293 Mdd~~-~--~~-------i-~~pSsGvHIVlP~yY~P~-~m-GlldP~TsDgRViFf-l----P-W--qg~TIaGTTD~p 351 (680)
T KOG0042|consen 293 MDDED-A--KP-------I-CVPSSGVHIVLPGYYCPE-NM-GLLDPKTSDGRVIFF-L----P-W--QGKTIAGTTDIP 351 (680)
T ss_pred hcccc-c--Cc-------e-eccCCceeEEcccccCCc-cc-ccccCCCCCCcEEEE-e----c-c--CCceeeccCCCC
Confidence 33321 1 11 1 123345666666554422 11 12222110 011112 1 1 1 122222221111
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHhhc
Q 013390 303 -ANELMPLKDDQVVAKAVSYLSKCI 326 (444)
Q Consensus 303 -~~~~~~~~~ee~~~~~l~~l~~~~ 326 (444)
.......+.|+-++.+++++..++
T Consensus 352 t~v~~~P~PtE~dIqfIL~ev~~yl 376 (680)
T KOG0042|consen 352 TSVTHSPTPTEDDIQFILKEVQHYL 376 (680)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhh
Confidence 123344566777889999999987
No 359
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=35.94 E-value=45 Score=33.41 Aligned_cols=39 Identities=21% Similarity=0.070 Sum_probs=28.4
Q ss_pred CCCCCEEEeeccccc-----CCC-cchhhHHHHHHHHHHHHHHHH
Q 013390 362 TSFPNLFMAGDWITT-----RHG-SWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 362 ~~~~~l~laGd~~~~-----~~~-~~~~egAv~SG~~aA~~il~~ 400 (444)
.|++|||-||+.+.. .|. +.++-.|+..|+.|++.+.+.
T Consensus 385 ~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 385 VAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 589999999975421 121 245677899999999988764
No 360
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=35.86 E-value=43 Score=35.08 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=30.9
Q ss_pred CCCCCEEEeecccc----cCCC--cchhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWIT----TRHG--SWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~----~~~~--~~~~egAv~SG~~aA~~il~~lg 402 (444)
++|+|||-||..+. ..|+ +.++-.|+.+|+.|++.+.+...
T Consensus 526 ~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 572 (581)
T PRK06134 526 QPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGASG 572 (581)
T ss_pred CCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcCC
Confidence 58999999997542 1232 13677789999999999987665
No 361
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=35.47 E-value=39 Score=35.11 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=28.3
Q ss_pred CCCCCEEEeecccc------cCC---CcchhhHHHHHHHHHHHHHHH
Q 013390 362 TSFPNLFMAGDWIT------TRH---GSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 362 ~~~~~l~laGd~~~------~~~---~~~~~egAv~SG~~aA~~il~ 399 (444)
+|+||||-||+.+. .++ ++.++-.|+.+|+.|++.+.+
T Consensus 502 ~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 502 TPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred CEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 58999999998763 122 124577889999999998754
No 362
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=35.12 E-value=45 Score=35.28 Aligned_cols=40 Identities=35% Similarity=0.406 Sum_probs=30.1
Q ss_pred CCCCCEEEeecccccC-CC-----cchhhHHHHHHHHHHHHHHHHh
Q 013390 362 TSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~-~~-----~~~~egAv~SG~~aA~~il~~l 401 (444)
++++|||-||+.+.++ |+ +.++-.|+..|++|++.+.+..
T Consensus 400 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~ 445 (617)
T PTZ00139 400 KIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEIL 445 (617)
T ss_pred CccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhh
Confidence 5799999999975322 22 1267778999999999988764
No 363
>PRK08275 putative oxidoreductase; Provisional
Probab=34.83 E-value=43 Score=34.84 Aligned_cols=41 Identities=24% Similarity=0.415 Sum_probs=31.3
Q ss_pred CCCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHh
Q 013390 359 RGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 359 ~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~l 401 (444)
..+|.++|||-||+...+++ .++.+|+..|+.|++.+.+.+
T Consensus 364 ~~~t~i~gl~a~Ge~~~~~~--~~~~~~~~~G~~a~~~~~~~~ 404 (554)
T PRK08275 364 KAETTVPGLYAAGDMASVPH--NYMLGAFTYGWFAGENAAEYV 404 (554)
T ss_pred CCccCCCCEEECcccCCchh--HHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999654333 356678899999999887665
No 364
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=34.50 E-value=59 Score=33.25 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=29.4
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|-+||.+. .+ ....-|+..|..+|+.|+.
T Consensus 314 l~Ts~~~IyA~GDv~~--~~-~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 314 SRTNVPNIYAIGDVTD--RV-MLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred CcCCCCCEEEeeecCC--Cc-ccHHHHHHHHHHHHHHHhC
Confidence 4577899999999875 23 3566699999999999874
No 365
>PRK13748 putative mercuric reductase; Provisional
Probab=33.64 E-value=51 Score=34.32 Aligned_cols=37 Identities=24% Similarity=0.213 Sum_probs=29.3
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++.++|+|.+||.+. .+ ..+.-|+..|+.||..|+.
T Consensus 391 ~~Ts~~~IyA~GD~~~--~~-~~~~~A~~~g~~aa~~i~g 427 (561)
T PRK13748 391 MRTSVPHIYAAGDCTD--QP-QFVYVAAAAGTRAAINMTG 427 (561)
T ss_pred cccCCCCEEEeeecCC--Cc-cchhHHHHHHHHHHHHHcC
Confidence 3567899999999874 34 4566788999999998863
No 366
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=33.54 E-value=49 Score=33.13 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=27.2
Q ss_pred CCCCCEEEeecccccCCCc-----chhhHHHHHHHHHHHHHHHHh
Q 013390 362 TSFPNLFMAGDWITTRHGS-----WSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~~~~-----~~~egAv~SG~~aA~~il~~l 401 (444)
+.++|||.+|+-+...-+. +++ |+.||..||+.|++..
T Consensus 378 ~~~~nl~a~G~vl~g~d~~~~~~g~Gv--a~~ta~~a~~~~~~~~ 420 (422)
T PRK05329 378 PVIENLYAAGAVLGGYDPIREGCGSGV--ALATALHAAEQIAEEA 420 (422)
T ss_pred eeccceEEeeehhcCCchHHhCCCchh--HHHHHHHHHHHHHHhh
Confidence 3479999999877521110 233 7899999999998764
No 367
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=33.41 E-value=54 Score=33.07 Aligned_cols=37 Identities=24% Similarity=0.169 Sum_probs=29.3
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|.+||.+. .+ ....-|+..|+.||+.|+.
T Consensus 294 ~~ts~~~IyA~GD~~~--~~-~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 294 TQTSVPGIYAAGDVNG--KP-PLLHEAADEGRIAAENAAG 330 (460)
T ss_pred cccCCCCEEEEEecCC--Cc-cchhHHHHHHHHHHHHhcC
Confidence 4567899999999875 23 3456799999999999875
No 368
>PLN02852 ferredoxin-NADP+ reductase
Probab=33.28 E-value=45 Score=34.08 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=32.6
Q ss_pred CCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 361 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 361 ~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
.++++|+|.+||.... -. +.+-.++..|..+|+.|++++..
T Consensus 383 ~T~ipGvyAaGDi~~G-p~-gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 383 ADTEPGLYVVGWLKRG-PT-GIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred ccCCCCEEEeeeEecC-CC-CeeeecHhhHHHHHHHHHHHHHc
Confidence 3678999999998763 22 46667888999999999999854
No 369
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=33.09 E-value=44 Score=34.85 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=28.6
Q ss_pred CCCCCEEEeeccccc----CCCc--chhhHHHHHHHHHHHHHHH
Q 013390 362 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 362 ~~~~~l~laGd~~~~----~~~~--~~~egAv~SG~~aA~~il~ 399 (444)
.+++|||-||.-+.. .|++ .++-.|+.+|+.|++.+.+
T Consensus 512 ~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 512 SVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAA 555 (557)
T ss_pred CCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhh
Confidence 589999999987642 2331 3566789999999998865
No 370
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.09 E-value=1.3e+02 Score=30.47 Aligned_cols=55 Identities=16% Similarity=0.002 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhcCc--EEEcCceeeEEEecCCCCeEEEEEe-C--C--eEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~--~v~~~~~V~~I~~~~~~g~v~~v~~-~--g--~~~~ad~VI~a~p~~~ 220 (444)
+.+.|...++..+. .|++++.|.++...++ |++. |.+ + + +...+|.||+|+....
T Consensus 92 ~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~-V~~~~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 92 VLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWR-VTTKDNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred HHHHHHHHHHhcChhhheEecccEEEEeeccC-Ccee-EEEecCCcceeEEEeeEEEEcccCcC
Confidence 55555555554443 6999999999998764 4454 444 3 2 4678999999999873
No 371
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=33.06 E-value=65 Score=32.91 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=29.0
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+++|.+||.+.. .+ ....-|+..|+.+|+.|+.
T Consensus 306 ~~Ts~p~IyA~GDv~~~-~~-~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 306 EQTNVPYIYAVGDILED-KQ-ELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred cccCCCCEEEEEEecCC-Cc-cchHHHHHHHHHHHHHHhc
Confidence 44678999999998752 23 3455689999999999874
No 372
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=32.56 E-value=77 Score=31.65 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=31.4
Q ss_pred CCCCCEEEeeccccc---CCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITT---RHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~---~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
+..+|+|-+||.... ..| ....-|+..|..+|+.|...+.
T Consensus 306 ~~~~~IfAiGD~a~~~~~~~~-~~~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 306 KPIPNVFALGDCAANEERPLP-TLAQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred CCCCCEEEEeccccCCCCCCC-CchHHHHHHHHHHHHHHHHHhc
Confidence 467999999998752 134 3556689999999999998874
No 373
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=32.46 E-value=54 Score=33.30 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=29.5
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|-+||.+. .+ ....-|+..|+.||+.|+.
T Consensus 300 ~~t~~p~VyAiGDv~~--~~-~la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 300 CRTNVPHIFAIGDIVG--QP-MLAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred cccCCCCEEEehhhcC--Cc-ccHHHHHHHHHHHHHHHcC
Confidence 3567899999999874 24 3567799999999999875
No 374
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=32.43 E-value=45 Score=33.26 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=26.5
Q ss_pred CCCCCC-CCCCCEEEeeccccc------CCCcchhhHHHHHHHHHHHHHH
Q 013390 356 YMMRGF-TSFPNLFMAGDWITT------RHGSWSQERSYVTGLEAANRVV 398 (444)
Q Consensus 356 ~~p~~~-~~~~~l~laGd~~~~------~~~~~~~egAv~SG~~aA~~il 398 (444)
.||... ..++|||.||.-.+. +-+ +++ |+.||..||+.|+
T Consensus 373 lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gcG-~GV--ai~Ta~~aa~~i~ 419 (419)
T TIGR03378 373 LRPSRGGQTIENLYAIGAVLGGYDPIFEGCG-SGV--AVSTALHAAEQII 419 (419)
T ss_pred cCccCCCcccccceEechhhcCCChHhcCCC-chh--HHHHHHHHHHhhC
Confidence 455422 248999999976542 222 343 7889999999873
No 375
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=32.13 E-value=39 Score=34.83 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=28.7
Q ss_pred CCCCCEEEeecccc----cCCCc--chhhHHHHHHHHHHHHHHH
Q 013390 362 TSFPNLFMAGDWIT----TRHGS--WSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 362 ~~~~~l~laGd~~~----~~~~~--~~~egAv~SG~~aA~~il~ 399 (444)
.+|+|||-||.-+. ..|+. .++-.|+..|+.|++.+..
T Consensus 467 ~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 467 RPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred CEeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 58999999998653 23432 3478899999999998754
No 376
>PRK14694 putative mercuric reductase; Provisional
Probab=31.97 E-value=59 Score=32.95 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=29.3
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|.+||.+. .+ ..+.-|...|+.||..|+.
T Consensus 298 ~~Ts~~~IyA~GD~~~--~~-~~~~~A~~~G~~aa~~i~~ 334 (468)
T PRK14694 298 LQTTVSGIYAAGDCTD--QP-QFVYVAAAGGSRAAINMTG 334 (468)
T ss_pred cccCCCCEEEEeecCC--Cc-ccHHHHHHHHHHHHHHhcC
Confidence 4567899999999875 24 4667789999999998863
No 377
>PLN02507 glutathione reductase
Probab=31.76 E-value=66 Score=33.02 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=29.6
Q ss_pred CCCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 359 RGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 359 ~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
..++..+|+|-+||.+.. + ....-|...|+.+|+.|+.
T Consensus 325 ~~~Ts~p~IyAiGDv~~~-~--~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 325 YSRTNIPSIWAIGDVTNR-I--NLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred CCcCCCCCEEEeeEcCCC-C--ccHHHHHHHHHHHHHHHcC
Confidence 345788999999998852 2 3556789999999998864
No 378
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=31.74 E-value=1.1e+02 Score=31.13 Aligned_cols=43 Identities=26% Similarity=0.326 Sum_probs=28.6
Q ss_pred cCcE-EEcCceeeEEEecCCCCeEEEEEe---------CC-----------eEEecCEEEEccCh
Q 013390 175 RGCE-FLDGRRVTDFIYDEERCCISDVVC---------GK-----------ETYSAGAVVLAVGI 218 (444)
Q Consensus 175 ~G~~-v~~~~~V~~I~~~~~~g~v~~v~~---------~g-----------~~~~ad~VI~a~p~ 218 (444)
.|++ +++++.+.+|.-+++ |+|++|.+ +| .++.+|.||+|+..
T Consensus 349 ~gv~~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~ 412 (485)
T TIGR01317 349 YGRDPREYSILTKEFIGDDE-GKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGF 412 (485)
T ss_pred cCccceEEecCcEEEEEcCC-CeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCc
Confidence 4554 457888888875543 55666542 12 26899999999875
No 379
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=31.67 E-value=63 Score=33.97 Aligned_cols=40 Identities=28% Similarity=0.307 Sum_probs=29.7
Q ss_pred CCCCCEEEeeccccc-CCC-----cchhhHHHHHHHHHHHHHHHHh
Q 013390 362 TSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 362 ~~~~~l~laGd~~~~-~~~-----~~~~egAv~SG~~aA~~il~~l 401 (444)
++++|||-||+-+.+ .|+ +.++-+|+..|+.|++.+.+..
T Consensus 378 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 423 (588)
T PRK08958 378 VVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESL 423 (588)
T ss_pred CccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 579999999996542 222 1345778999999999887765
No 380
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=31.34 E-value=56 Score=34.19 Aligned_cols=40 Identities=28% Similarity=0.329 Sum_probs=29.5
Q ss_pred CCCCCEEEeeccccc-CCC-----cchhhHHHHHHHHHHHHHHHHh
Q 013390 362 TSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 362 ~~~~~l~laGd~~~~-~~~-----~~~~egAv~SG~~aA~~il~~l 401 (444)
++++|||-||+.+.+ .|+ +.++-.|+.+|+.|++.+.+..
T Consensus 369 ~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~ 414 (577)
T PRK06069 369 EWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYA 414 (577)
T ss_pred CEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 359999999997642 232 1346778999999999987765
No 381
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=31.31 E-value=56 Score=34.61 Aligned_cols=41 Identities=32% Similarity=0.419 Sum_probs=30.4
Q ss_pred CCCCCCEEEeecccccCCC-----cchhhHHHHHHHHHHHHHHHHh
Q 013390 361 FTSFPNLFMAGDWITTRHG-----SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 361 ~~~~~~l~laGd~~~~~~~-----~~~~egAv~SG~~aA~~il~~l 401 (444)
.++++|||-||+....-|+ +.++-.|+..|+.|++.+.+..
T Consensus 402 ~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~ 447 (626)
T PRK07803 402 AATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYV 447 (626)
T ss_pred eeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHh
Confidence 3689999999986532222 2467778999999999887764
No 382
>PRK09077 L-aspartate oxidase; Provisional
Probab=31.09 E-value=71 Score=33.12 Aligned_cols=42 Identities=33% Similarity=0.379 Sum_probs=31.2
Q ss_pred CCCCCCCEEEeeccccc-CCC-----cchhhHHHHHHHHHHHHHHHHh
Q 013390 360 GFTSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~-~~~-----~~~~egAv~SG~~aA~~il~~l 401 (444)
.+++++|||-||+...+ .++ +.++-.|+..|++|++.+.+..
T Consensus 362 ~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 409 (536)
T PRK09077 362 GRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRL 409 (536)
T ss_pred CccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 45789999999997532 232 1356778999999999997764
No 383
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=31.04 E-value=66 Score=32.60 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=29.1
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|.+||.+. . + ....-|...|+.||+.|+.
T Consensus 299 ~~Ts~p~IyAiGD~~~-~-~-~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 299 MRTNVPHIYAIGDVTA-K-L-QLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred cccCCCCEEEEeecCC-C-c-ccHhHHHHHHHHHHHHHcC
Confidence 3567899999999875 2 3 3566799999999998874
No 384
>PRK08071 L-aspartate oxidase; Provisional
Probab=31.01 E-value=64 Score=33.22 Aligned_cols=42 Identities=36% Similarity=0.435 Sum_probs=30.4
Q ss_pred CCCCCCCEEEeecccccC-CC-----cchhhHHHHHHHHHHHHHHHHh
Q 013390 360 GFTSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~-~~-----~~~~egAv~SG~~aA~~il~~l 401 (444)
.+++++|||-||+...++ |+ +.++-.|+..|++|++.+....
T Consensus 341 ~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 388 (510)
T PRK08071 341 GETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTKA 388 (510)
T ss_pred CcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 457899999999975321 22 1356778899999999986653
No 385
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=30.86 E-value=57 Score=32.98 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=29.5
Q ss_pred CCCCCEEEeeccccc-----CCCc-chhhHHHHHHHHHHHHHHHHh
Q 013390 362 TSFPNLFMAGDWITT-----RHGS-WSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 362 ~~~~~l~laGd~~~~-----~~~~-~~~egAv~SG~~aA~~il~~l 401 (444)
++++|||-||+.+.. .+++ .++-.|+..|+.|++.+.+..
T Consensus 416 ~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~ 461 (466)
T PRK08274 416 RPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHA 461 (466)
T ss_pred CCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHh
Confidence 489999999986432 2221 456678999999999988764
No 386
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=30.76 E-value=1.4e+02 Score=30.38 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=28.1
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|.+||.+. + + .....|...|..+|+.|+.
T Consensus 306 l~ts~~~IyAiGD~~~-~-~-~~~~~A~~~g~~aa~~i~g 342 (472)
T PRK05976 306 CQTKERHIYAIGDVIG-E-P-QLAHVAMAEGEMAAEHIAG 342 (472)
T ss_pred cccCCCCEEEeeecCC-C-c-ccHHHHHHHHHHHHHHHcC
Confidence 3456799999999874 2 3 3566789999999988753
No 387
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=30.50 E-value=57 Score=33.54 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=29.8
Q ss_pred CCCCCEEEeecccccCCC-----cchhhHHHHHHHHHHHHHHHHh
Q 013390 362 TSFPNLFMAGDWITTRHG-----SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~~~-----~~~~egAv~SG~~aA~~il~~l 401 (444)
+|++|||-||+.+..-++ +.++-.|+.+|+.|++.+.+..
T Consensus 459 ~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~ 503 (506)
T PRK06481 459 SPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFA 503 (506)
T ss_pred CEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 589999999996542121 2456778999999999887754
No 388
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=29.93 E-value=60 Score=34.00 Aligned_cols=41 Identities=12% Similarity=0.086 Sum_probs=30.1
Q ss_pred CCCCCEEEeeccccc----CCCc--chhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~----~~~~--~~~egAv~SG~~aA~~il~~lg 402 (444)
++++|||-||..+.. .|++ .++-.|+..|+.|++.+.+...
T Consensus 527 ~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 573 (578)
T PRK12843 527 QPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRTL 573 (578)
T ss_pred CCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhhh
Confidence 589999999966532 3331 3466689999999999987654
No 389
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=29.63 E-value=71 Score=32.28 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=29.5
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+++|-+||.+. .+ ....-|...|+.+|+.|+.
T Consensus 297 ~~t~~~~VyAiGD~~~--~~-~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 297 LRTNVPNIYAIGDIVG--GP-MLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred CccCCCCEEEeeecCC--Cc-chHHHHHHHHHHHHHHHcC
Confidence 3567899999999874 23 3567799999999999875
No 390
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=29.30 E-value=75 Score=33.25 Aligned_cols=40 Identities=25% Similarity=0.359 Sum_probs=30.1
Q ss_pred CCCCCEEEeeccccc-CCC-----cchhhHHHHHHHHHHHHHHHHh
Q 013390 362 TSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 362 ~~~~~l~laGd~~~~-~~~-----~~~~egAv~SG~~aA~~il~~l 401 (444)
++++|||-||+-+.+ .|+ +.++-.|+..|+.|++.+.+..
T Consensus 368 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 413 (575)
T PRK05945 368 GLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYV 413 (575)
T ss_pred CccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 579999999997642 222 1356778999999999987765
No 391
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=28.93 E-value=73 Score=33.33 Aligned_cols=41 Identities=27% Similarity=0.261 Sum_probs=29.9
Q ss_pred CCCCCEEEeeccccc-CCC-----cchhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~-~~~-----~~~~egAv~SG~~aA~~il~~lg 402 (444)
+++||||-||+-+.+ .++ +.++-+|+..|++|++.+.+.+.
T Consensus 360 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 406 (570)
T PRK05675 360 QIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALK 406 (570)
T ss_pred CccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHHh
Confidence 479999999996542 122 13457789999999999877653
No 392
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=28.91 E-value=76 Score=32.10 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=29.5
Q ss_pred CCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 361 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 361 ~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
++.++|+|-+||.+.. + ....-|...|+.||+.++.
T Consensus 299 ~Tnvp~IyA~GDV~~~--~-~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 299 TTNVPGIYAIGDVIGG--P-MLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred ccCCCCEEEeeccCCC--c-ccHhHHHHHHHHHHHHHhC
Confidence 4568999999998753 3 3567789999999999987
No 393
>PRK06370 mercuric reductase; Validated
Probab=28.88 E-value=81 Score=31.90 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=29.2
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|-+||.+.. + .....|...|+.||+.|+.
T Consensus 297 l~t~~~~IyAiGD~~~~--~-~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 297 LRTTNPGIYAAGDCNGR--G-AFTHTAYNDARIVAANLLD 333 (463)
T ss_pred CcCCCCCEEEeeecCCC--c-ccHHHHHHHHHHHHHHHhC
Confidence 45678999999998752 3 3566789999999999875
No 394
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=28.82 E-value=1.4e+02 Score=31.70 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=26.4
Q ss_pred CCCCCCCEEEeecccccCCCc-----chhhHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGS-----WSQERSYVTGLEAANR 396 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~-----~~~egAv~SG~~aA~~ 396 (444)
.+|.++|||-||+.....|+. -++-+|+..|++|++.
T Consensus 415 ~~T~i~GLyAaGE~~~g~HGanRL~~nsL~e~lv~G~~ag~~ 456 (640)
T PRK07573 415 LMSTIPGLFVIGEANFSDHGANRLGASALMQGLADGYFVLPY 456 (640)
T ss_pred CccccCCEEECccccccCCCcccccchhHHHHHHHHHHHhHH
Confidence 457899999999965433441 1366788889888766
No 395
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=28.80 E-value=73 Score=32.17 Aligned_cols=42 Identities=29% Similarity=0.395 Sum_probs=26.6
Q ss_pred EEEcCceeeEEEecCC-CC--eEEEEEe-CCeEEecCEEEEccChhh
Q 013390 178 EFLDGRRVTDFIYDEE-RC--CISDVVC-GKETYSAGAVVLAVGIST 220 (444)
Q Consensus 178 ~v~~~~~V~~I~~~~~-~g--~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (444)
+|+-+ .|.+|...++ .| .+.+|.+ +|..+.|+.||+||..-.
T Consensus 141 ~ire~-~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTFL 186 (679)
T KOG2311|consen 141 EIREG-AVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTFL 186 (679)
T ss_pred hhhhh-hhhheeeccCCCCceEEEEEEEecCcEeccceEEEeeccce
Confidence 44443 4455554432 12 3667766 488899999999998644
No 396
>PTZ00052 thioredoxin reductase; Provisional
Probab=28.79 E-value=76 Score=32.56 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=29.2
Q ss_pred CCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 361 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 361 ~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
++..+++|-+||-+. +.+ ....-|+..|+.+|+.|+.
T Consensus 304 ~Ts~p~IyAiGDv~~-~~~-~l~~~A~~~g~~aa~ni~g 340 (499)
T PTZ00052 304 CTNIPNIFAVGDVVE-GRP-ELTPVAIKAGILLARRLFK 340 (499)
T ss_pred cCCCCCEEEEEEecC-CCc-ccHHHHHHHHHHHHHHHhC
Confidence 467899999999774 234 4667799999999998874
No 397
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.31 E-value=1.2e+02 Score=30.08 Aligned_cols=41 Identities=27% Similarity=0.325 Sum_probs=27.4
Q ss_pred EEEcCceeeEEEecCCCCeEE--EEEeCCeEEecCEEEEccCh
Q 013390 178 EFLDGRRVTDFIYDEERCCIS--DVVCGKETYSAGAVVLAVGI 218 (444)
Q Consensus 178 ~v~~~~~V~~I~~~~~~g~v~--~v~~~g~~~~ad~VI~a~p~ 218 (444)
.+++|++|+.|...+.+..+. .++.++.+++|+.+|+.+..
T Consensus 113 ~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~ 155 (436)
T COG3486 113 SLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGT 155 (436)
T ss_pred ccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCC
Confidence 689999999774333212222 23334678999999999874
No 398
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=28.24 E-value=64 Score=37.04 Aligned_cols=42 Identities=24% Similarity=0.138 Sum_probs=31.1
Q ss_pred CCCCCEEEeecccccC----CC-cchhhHHHHHHHHHHHHHHHHhCC
Q 013390 362 TSFPNLFMAGDWITTR----HG-SWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~----~~-~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
.+++|||-||+.+..- +. +.++-.|+..|+.|++.+.+.+.+
T Consensus 858 ~pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~ 904 (1167)
T PTZ00306 858 RPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQK 904 (1167)
T ss_pred ceeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 5899999999965421 21 144566899999999999887754
No 399
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=27.61 E-value=64 Score=30.69 Aligned_cols=41 Identities=29% Similarity=0.238 Sum_probs=31.1
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
.+|.++|+|-|||-+...+ .-+.-|+..|..||..+.+.+.
T Consensus 261 ~~TsvpGifAaGDv~~~~~--rqi~ta~~~G~~Aa~~a~~~l~ 301 (305)
T COG0492 261 METSVPGIFAAGDVADKNG--RQIATAAGDGAIAALSAERYLE 301 (305)
T ss_pred cccCCCCEEEeEeeccCcc--cEEeehhhhHHHHHHHHHHHhh
Confidence 4688999999999876422 2355678888899988877764
No 400
>PRK07512 L-aspartate oxidase; Provisional
Probab=27.57 E-value=83 Score=32.40 Aligned_cols=42 Identities=31% Similarity=0.390 Sum_probs=30.2
Q ss_pred CCCCCCCEEEeecccccC-CCc-----chhhHHHHHHHHHHHHHHHHh
Q 013390 360 GFTSFPNLFMAGDWITTR-HGS-----WSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~-~~~-----~~~egAv~SG~~aA~~il~~l 401 (444)
.+++++|||-||+.+.+| |+. .++-.|+..|+.|++.+.+..
T Consensus 350 ~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~ 397 (513)
T PRK07512 350 GRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTP 397 (513)
T ss_pred CccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 447899999999975322 221 245667889999999987764
No 401
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=27.38 E-value=85 Score=31.91 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=28.8
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|.+||.+.. + ....-|...|..||+.|..
T Consensus 310 ~~Ts~~~VyA~GD~~~~--~-~~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 310 CRTNVPNVYAIGDVVRG--P-MLAHKAEEEGVAVAERIAG 346 (475)
T ss_pred CccCCCCEEEEEeccCC--c-chHHHHHHHHHHHHHHHcC
Confidence 34678999999998752 3 3566789999999999864
No 402
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=27.34 E-value=94 Score=30.06 Aligned_cols=57 Identities=14% Similarity=0.173 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
.+..+|+++.++..++|....++.+++..+..+....|++. |..+.++.||+++.+.
T Consensus 267 kl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 267 KLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 48899999999999999999999999986432334446665 7889999999999984
No 403
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=26.93 E-value=83 Score=31.72 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=29.0
Q ss_pred CCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHH
Q 013390 361 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 361 ~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~ 400 (444)
++..+++|.+||.+. .+ ....-|+..|+.+|+.|...
T Consensus 296 ~t~~~~IyaiGD~~~--~~-~~~~~A~~~g~~aa~~i~~~ 332 (461)
T TIGR01350 296 RTNVPGIYAIGDVIG--GP-MLAHVASHEGIVAAENIAGK 332 (461)
T ss_pred ccCCCCEEEeeecCC--Cc-ccHHHHHHHHHHHHHHHcCC
Confidence 466799999999874 23 35667999999999998753
No 404
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=26.53 E-value=80 Score=32.00 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=29.5
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~ 400 (444)
.++..+|+|-+||.+. + + ....-|...|+.+|+.|+..
T Consensus 301 ~~Ts~~~IyA~GD~~~-~-~-~la~~A~~~g~~aa~~i~~~ 338 (466)
T PRK06115 301 HRTSVPGVWVIGDVTS-G-P-MLAHKAEDEAVACIERIAGK 338 (466)
T ss_pred eecCCCCEEEeeecCC-C-c-ccHHHHHHHHHHHHHHHcCC
Confidence 3577899999999885 2 3 35667899999999988753
No 405
>PLN02815 L-aspartate oxidase
Probab=26.12 E-value=1e+02 Score=32.36 Aligned_cols=43 Identities=30% Similarity=0.346 Sum_probs=31.2
Q ss_pred CCCCCCCCEEEeeccccc-CCC-----cchhhHHHHHHHHHHHHHHHHh
Q 013390 359 RGFTSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 359 ~~~~~~~~l~laGd~~~~-~~~-----~~~~egAv~SG~~aA~~il~~l 401 (444)
..+++++|||-||+...+ .|+ +.++-.|+..|++|++.+.+.+
T Consensus 385 ~~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~ 433 (594)
T PLN02815 385 QGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHM 433 (594)
T ss_pred CCceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 345789999999997532 222 1356778899999999987654
No 406
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=25.87 E-value=1.2e+02 Score=30.79 Aligned_cols=44 Identities=34% Similarity=0.439 Sum_probs=32.6
Q ss_pred CCCCCCCCEEEeecccccC-CCc-----chhhHHHHHHHHHHHHHHHHhC
Q 013390 359 RGFTSFPNLFMAGDWITTR-HGS-----WSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 359 ~~~~~~~~l~laGd~~~~~-~~~-----~~~egAv~SG~~aA~~il~~lg 402 (444)
.-+|.++|||-+|+-..+| |+. -++-.++..|.++|+.|..++.
T Consensus 349 ~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~~~ 398 (518)
T COG0029 349 NGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRLA 398 (518)
T ss_pred CCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhcccc
Confidence 3468899999999977664 331 2333468899999999998864
No 407
>PRK08401 L-aspartate oxidase; Provisional
Probab=25.27 E-value=1.1e+02 Score=31.11 Aligned_cols=41 Identities=29% Similarity=0.324 Sum_probs=29.1
Q ss_pred CCCCCCCEEEeeccccc-CCCc-----chhhHHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~-~~~~-----~~~egAv~SG~~aA~~il~~ 400 (444)
.+++++|||-||+.+.+ -|+. .++-.|+..|++|++.+.+.
T Consensus 319 ~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~ 365 (466)
T PRK08401 319 YRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE 365 (466)
T ss_pred CcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 34789999999997532 2321 23455788999999998764
No 408
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=25.07 E-value=1.3e+02 Score=29.92 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=33.4
Q ss_pred CCCCCEEEeecccccC----CCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITTR----HGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~----~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
...+++|.+||..... .| .+-..|.+.|.-+|+-|.+.+.
T Consensus 289 ~~~~~IFa~GD~A~~~~~~p~P-~tAQ~A~Qqg~~~a~ni~~~l~ 332 (405)
T COG1252 289 PGHPDIFAAGDCAAVIDPRPVP-PTAQAAHQQGEYAAKNIKARLK 332 (405)
T ss_pred CCCCCeEEEeccccCCCCCCCC-ChhHHHHHHHHHHHHHHHHHhc
Confidence 4678999999987543 36 6889999999999999999875
No 409
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=24.93 E-value=1.4e+02 Score=30.30 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=29.1
Q ss_pred CCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 361 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 361 ~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
.+..+|+|+||...++ -.+..++.+|..||-+....++.
T Consensus 508 ~s~~~GIflAG~aqgP----kdI~~siaqa~aAA~kA~~~l~~ 546 (622)
T COG1148 508 DSNRDGIFLAGAAQGP----KDIADSIAQAKAAAAKAAQLLGR 546 (622)
T ss_pred cccCCcEEEeecccCC----ccHHHHHHHhHHHHHHHHHHhhc
Confidence 3567899999987653 45777888888888777776654
No 410
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=24.83 E-value=49 Score=26.47 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 013390 165 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (444)
Q Consensus 165 ~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~ 221 (444)
.++|.+...++|.+|+ |+.++..| +....+..+.-.||.||+|.+..+-
T Consensus 21 AeaLe~~A~~~g~~IK-------VETqGs~G-~eN~LT~edI~~Ad~VI~AaD~~i~ 69 (122)
T COG1445 21 AEALEKAAKKLGVEIK-------VETQGAVG-IENRLTAEDIAAADVVILAADIEVD 69 (122)
T ss_pred HHHHHHHHHHcCCeEE-------EEcCCccc-ccCcCCHHHHHhCCEEEEEeccccc
Confidence 4567777777888774 45554211 2211122345579999999998653
No 411
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=24.77 E-value=99 Score=31.24 Aligned_cols=38 Identities=24% Similarity=0.115 Sum_probs=29.5
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~ 400 (444)
.++..+|+|-+||.+.. + ....-|...|+.||..|+..
T Consensus 292 ~~Ts~~~VyAiGD~~~~--~-~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 292 LRTSNPGIYAAGDVTGG--L-QLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred ccCCCCCEEEeeecCCC--c-ccHhHHHHHHHHHHHHhcCC
Confidence 35678999999998753 3 34567899999999998753
No 412
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=24.63 E-value=1.1e+02 Score=32.25 Aligned_cols=43 Identities=28% Similarity=0.352 Sum_probs=30.2
Q ss_pred CCCCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHh
Q 013390 358 MRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 358 p~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~l 401 (444)
...+|.++|||-|||...++.. ....++...|+.+++.+.+.+
T Consensus 389 ~~~~T~v~glyA~Ge~~~~~~~-~l~~~s~~~g~~ag~~~~~~~ 431 (608)
T PRK06854 389 YNRMTTVEGLFAAGDVVGGSPH-KFSSGSFAEGRIAAKAAVRYI 431 (608)
T ss_pred cccccCCCCEEEeeecCCCCcc-hhHHHHHHHHHHHHHHHHHHH
Confidence 3446789999999997653322 345567777888888777665
No 413
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=24.59 E-value=2e+02 Score=32.36 Aligned_cols=49 Identities=29% Similarity=0.337 Sum_probs=32.6
Q ss_pred hcCcEEEcCceeeEEEecCCCCeEE----------------EEEeC-CeEEecCEEEEccChhhHHHhh
Q 013390 174 TRGCEFLDGRRVTDFIYDEERCCIS----------------DVVCG-KETYSAGAVVLAVGISTLQELI 225 (444)
Q Consensus 174 ~~G~~v~~~~~V~~I~~~~~~g~v~----------------~v~~~-g~~~~ad~VI~a~p~~~~~~ll 225 (444)
+.|++++.++.+.+|..+ |+++ .+.++ +.++.+|.||+|++...-..++
T Consensus 719 eeGVe~~~~~~p~~I~~d---G~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntell 784 (1019)
T PRK09853 719 EDGVEFKELLNPESFDAD---GTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELL 784 (1019)
T ss_pred HcCCEEEeCCceEEEEcC---CcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHH
Confidence 468999999999988632 2232 12222 3578999999999876433343
No 414
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=24.09 E-value=72 Score=31.77 Aligned_cols=34 Identities=18% Similarity=0.410 Sum_probs=23.2
Q ss_pred CCCCCEEEeeccccc-CCCc-chhhHHHHHHHHHHH
Q 013390 362 TSFPNLFMAGDWITT-RHGS-WSQERSYVTGLEAAN 395 (444)
Q Consensus 362 ~~~~~l~laGd~~~~-~~~~-~~~egAv~SG~~aA~ 395 (444)
..++||||||+-+.- |..+ =.+.-|..||+.|++
T Consensus 373 k~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 373 KLVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp SSSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 357999999987642 2111 246789999999986
No 415
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=24.00 E-value=94 Score=31.38 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=28.5
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|.+||.+. .+ ....-|+..|+.||..+..
T Consensus 293 ~~ts~~~VyA~GD~~~--~~-~la~~A~~~g~~aa~~~~g 329 (458)
T PRK06912 293 MQTNVPHIYACGDVIG--GI-QLAHVAFHEGTTAALHASG 329 (458)
T ss_pred eecCCCCEEEEeecCC--Cc-ccHHHHHHHHHHHHHHHcC
Confidence 3467899999999874 23 3566799999999988764
No 416
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=23.98 E-value=3e+02 Score=29.46 Aligned_cols=43 Identities=28% Similarity=0.359 Sum_probs=30.8
Q ss_pred CCC-CCCCEEEeeccccc-CCC-----cchhhHHHHHHHHHHHHHHHHhC
Q 013390 360 GFT-SFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 360 ~~~-~~~~l~laGd~~~~-~~~-----~~~~egAv~SG~~aA~~il~~lg 402 (444)
.++ +++|||-||+.+.. .|+ +.++-+|+..|+.|++.+.+...
T Consensus 381 ~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~ 430 (657)
T PRK08626 381 GESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCL 430 (657)
T ss_pred CCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 345 69999999997532 122 13567789999999999887653
No 417
>PLN02546 glutathione reductase
Probab=23.49 E-value=1e+02 Score=32.17 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=29.0
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++.++|||-+||-+. +. ....-|...|..+|+.|+.
T Consensus 376 l~Ts~p~IYAaGDv~~-~~--~l~~~A~~~g~~~a~~i~g 412 (558)
T PLN02546 376 SRTSVPSIWAVGDVTD-RI--NLTPVALMEGGALAKTLFG 412 (558)
T ss_pred ceeCCCCEEEeeccCC-Cc--ccHHHHHHHHHHHHHHHcC
Confidence 4567899999999885 23 3566788999999988864
No 418
>PRK06444 prephenate dehydrogenase; Provisional
Probab=23.44 E-value=1.6e+02 Score=25.93 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.2
Q ss_pred ecCEEEEccChhhHHHhhhc
Q 013390 208 SAGAVVLAVGISTLQELIKN 227 (444)
Q Consensus 208 ~ad~VI~a~p~~~~~~ll~~ 227 (444)
.||.||+|+|+....+++..
T Consensus 31 ~~DlVilavPv~~~~~~i~~ 50 (197)
T PRK06444 31 KADHAFLSVPIDAALNYIES 50 (197)
T ss_pred CCCEEEEeCCHHHHHHHHHH
Confidence 58999999999998877765
No 419
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=22.66 E-value=90 Score=34.73 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=30.9
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHh
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~l 401 (444)
.+|.++|||-|||.....+ .++-+|+..|+.|++.+.+.+
T Consensus 370 ~~T~v~GLfAaGE~a~~~~--nsl~~a~v~G~~Ag~~a~~~~ 409 (897)
T PRK13800 370 ARTTVPGLYAAGDLACVPH--NYMIGAFVFGDLAGAHAAGTL 409 (897)
T ss_pred CcccCCCeEechhccCcch--hhhhhHHHhHHHHHHHHHHHH
Confidence 4578999999999654333 366678899999999887765
No 420
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.38 E-value=1.1e+02 Score=32.27 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=29.9
Q ss_pred CCCCCEEEeecccccC-CCc-----chhhHHHHHHHHHHHHHHHHh
Q 013390 362 TSFPNLFMAGDWITTR-HGS-----WSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~-~~~-----~~~egAv~SG~~aA~~il~~l 401 (444)
++++|||-||+-+.++ |+. .++-.|+..|+.|++.+.+..
T Consensus 381 ~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~~ 426 (591)
T PRK07057 381 EPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHV 426 (591)
T ss_pred CeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 3799999999975422 321 356778999999999987764
No 421
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=21.99 E-value=1.1e+02 Score=30.75 Aligned_cols=38 Identities=13% Similarity=0.082 Sum_probs=28.7
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~ 400 (444)
.+|..+++|.+||.+. .++ ...-|...|+.+|+.|+..
T Consensus 291 ~~Ts~~~IyA~GD~~~-~~~--l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 291 GRTSARGVWALGDVSS-PYQ--LKHVANAEARVVKHNLLHP 328 (452)
T ss_pred cccCCCCEEEeecccC-ccc--ChhHHHHHHHHHHHHhcCC
Confidence 3567899999999875 233 4456888999999988753
No 422
>COG0302 FolE GTP cyclohydrolase I [Coenzyme metabolism]
Probab=21.86 E-value=2e+02 Score=25.17 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCCCccccccCCCCChHHHHHHHHHHHHHHhhhc
Q 013390 390 GLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRAQ 435 (444)
Q Consensus 390 G~~aA~~il~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (444)
...|.+.|+..+|... .+++-.+.++++++.|+||=.-
T Consensus 15 ~e~avr~lL~~~Gedp--------~reGL~~TP~RVak~~~e~f~G 52 (195)
T COG0302 15 IEAAVRELLEALGEDP--------DREGLLETPKRVAKAYRELFSG 52 (195)
T ss_pred HHHHHHHHHHHhCCCC--------CchhhhhhHHHHHHHHHHHHhh
Confidence 6778889999999543 3468888999999999998653
No 423
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=21.80 E-value=2.8e+02 Score=29.64 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=31.0
Q ss_pred HhcCcEEEcCceeeEEEecCCCCeEE--EEEe----------------CC--eEEecCEEEEccChh
Q 013390 173 RTRGCEFLDGRRVTDFIYDEERCCIS--DVVC----------------GK--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 173 ~~~G~~v~~~~~V~~I~~~~~~g~v~--~v~~----------------~g--~~~~ad~VI~a~p~~ 219 (444)
.+.|++|++++.+.+|..++ +++. .+.. +| .++.+|.||++++..
T Consensus 372 ~~eGV~i~~~~~~~~i~~~~--~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~ 436 (652)
T PRK12814 372 LAEGVSLRELAAPVSIERSE--GGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQ 436 (652)
T ss_pred HHcCCcEEeccCcEEEEecC--CeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCc
Confidence 35799999999999998655 3332 1111 22 258999999999853
No 424
>PRK07804 L-aspartate oxidase; Provisional
Probab=21.46 E-value=1.4e+02 Score=31.10 Aligned_cols=43 Identities=35% Similarity=0.366 Sum_probs=30.4
Q ss_pred CCCCCCCCEEEeeccccc-CCC-----cchhhHHHHHHHHHHHHHHHHh
Q 013390 359 RGFTSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 359 ~~~~~~~~l~laGd~~~~-~~~-----~~~~egAv~SG~~aA~~il~~l 401 (444)
..+++++|||-||+-+.+ .|+ +.++..++..|+.|++.+.+..
T Consensus 365 ~~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~~ 413 (541)
T PRK07804 365 YGRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAHA 413 (541)
T ss_pred CCcccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345789999999997532 121 1345667889999999887664
No 425
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=21.37 E-value=74 Score=23.80 Aligned_cols=20 Identities=35% Similarity=0.478 Sum_probs=15.6
Q ss_pred ecCEEEEccChhhHHHhhhc
Q 013390 208 SAGAVVLAVGISTLQELIKN 227 (444)
Q Consensus 208 ~ad~VI~a~p~~~~~~ll~~ 227 (444)
.+|.||+++||..+..++..
T Consensus 61 ~advvilav~p~~~~~v~~~ 80 (96)
T PF03807_consen 61 EADVVILAVKPQQLPEVLSE 80 (96)
T ss_dssp HTSEEEE-S-GGGHHHHHHH
T ss_pred cCCEEEEEECHHHHHHHHHH
Confidence 59999999999999887765
No 426
>PRK07846 mycothione reductase; Reviewed
Probab=20.99 E-value=1.3e+02 Score=30.29 Aligned_cols=37 Identities=14% Similarity=0.070 Sum_probs=28.0
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|.+||.+.. .+ ...-|...|+.+|+.|+.
T Consensus 288 ~~Ts~p~IyA~GD~~~~-~~--l~~~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 288 QRTSAEGVFALGDVSSP-YQ--LKHVANHEARVVQHNLLH 324 (451)
T ss_pred cccCCCCEEEEeecCCC-cc--ChhHHHHHHHHHHHHHcC
Confidence 35678999999998752 33 445688889999988864
No 427
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=20.64 E-value=97 Score=29.83 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHH
Q 013390 361 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRV 397 (444)
Q Consensus 361 ~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~i 397 (444)
++.+|++|-.||-.. +-| -...-||.||+..|+++
T Consensus 328 ~t~vp~vyAvGDIl~-~kp-ELTPvAIqsGrlLa~Rl 362 (503)
T KOG4716|consen 328 ATNVPYVYAVGDILE-DKP-ELTPVAIQSGRLLARRL 362 (503)
T ss_pred hcCCCceEEecceec-CCc-ccchhhhhhchHHHHHH
No 428
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=20.28 E-value=84 Score=31.13 Aligned_cols=32 Identities=19% Similarity=0.451 Sum_probs=22.5
Q ss_pred CCCCEEEeeccccc-CCCc-chhhHHHHHHHHHH
Q 013390 363 SFPNLFMAGDWITT-RHGS-WSQERSYVTGLEAA 394 (444)
Q Consensus 363 ~~~~l~laGd~~~~-~~~~-~~~egAv~SG~~aA 394 (444)
-++||||||+-+.- |..+ =.+.-|..||+.|+
T Consensus 366 ~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 366 LVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred CCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 57999999987642 2221 24567889999886
Done!