Query 013390
Match_columns 444
No_of_seqs 198 out of 2337
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 09:41:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ka7_A Oxidoreductase; structu 100.0 4.3E-30 1.5E-34 255.8 36.4 312 64-399 112-425 (425)
2 1s3e_A Amine oxidase [flavin-c 100.0 1.8E-29 6.1E-34 257.9 29.8 309 92-415 142-468 (520)
3 3i6d_A Protoporphyrinogen oxid 100.0 1.3E-28 4.6E-33 248.1 19.9 367 2-401 65-468 (470)
4 3lov_A Protoporphyrinogen oxid 100.0 1.4E-28 4.9E-33 248.5 19.9 370 2-404 60-468 (475)
5 2ivd_A PPO, PPOX, protoporphyr 100.0 4.2E-28 1.4E-32 245.2 23.3 364 2-403 70-475 (478)
6 2yg5_A Putrescine oxidase; oxi 100.0 5.1E-28 1.7E-32 242.9 23.0 294 91-402 141-452 (453)
7 3nrn_A Uncharacterized protein 100.0 6.4E-26 2.2E-30 225.5 36.2 341 7-397 61-403 (421)
8 3nks_A Protoporphyrinogen oxid 100.0 1.1E-27 3.7E-32 242.1 21.2 295 93-400 141-473 (477)
9 1sez_A Protoporphyrinogen oxid 100.0 2.1E-27 7.1E-32 241.7 20.8 370 2-403 67-495 (504)
10 2vvm_A Monoamine oxidase N; FA 99.9 2E-26 6.8E-31 234.0 25.6 292 91-403 181-487 (495)
11 4gde_A UDP-galactopyranose mut 99.9 5.8E-23 2E-27 209.3 18.5 365 2-399 66-477 (513)
12 4dsg_A UDP-galactopyranose mut 99.9 2.7E-23 9.1E-28 209.7 15.4 361 2-398 65-452 (484)
13 4dgk_A Phytoene dehydrogenase; 99.9 5.3E-22 1.8E-26 201.6 25.0 294 96-406 164-496 (501)
14 1b37_A Protein (polyamine oxid 99.9 4.1E-23 1.4E-27 208.2 15.1 299 93-403 135-460 (472)
15 3k7m_X 6-hydroxy-L-nicotine ox 99.9 8.8E-21 3E-25 188.9 26.4 274 92-399 138-424 (431)
16 3qj4_A Renalase; FAD/NAD(P)-bi 99.9 2.5E-21 8.5E-26 186.9 21.6 229 155-401 106-342 (342)
17 2iid_A L-amino-acid oxidase; f 99.9 2.5E-20 8.7E-25 189.1 27.2 289 91-404 178-487 (498)
18 2z3y_A Lysine-specific histone 99.8 5.8E-20 2E-24 192.1 19.7 228 154-403 394-660 (662)
19 2xag_A Lysine-specific histone 99.8 1.5E-19 5E-24 191.7 21.1 228 154-403 565-831 (852)
20 2jae_A L-amino acid oxidase; o 99.8 1.6E-19 5.6E-24 182.7 15.6 233 152-402 230-486 (489)
21 4gut_A Lysine-specific histone 99.8 7.5E-19 2.6E-23 185.2 12.6 229 154-399 527-775 (776)
22 2b9w_A Putative aminooxidase; 99.8 9.5E-18 3.3E-22 166.6 19.2 276 93-398 140-423 (424)
23 1rsg_A FMS1 protein; FAD bindi 99.8 2.2E-17 7.6E-22 168.1 21.1 286 93-403 136-509 (516)
24 3ayj_A Pro-enzyme of L-phenyla 99.7 2.4E-17 8.2E-22 170.4 11.0 305 91-411 279-689 (721)
25 1yvv_A Amine oxidase, flavin-c 99.6 9.1E-15 3.1E-19 140.2 19.4 222 157-405 106-331 (336)
26 3p1w_A Rabgdi protein; GDI RAB 99.6 4.7E-15 1.6E-19 147.2 16.5 204 2-219 93-313 (475)
27 1vg0_A RAB proteins geranylger 99.6 4.4E-12 1.5E-16 129.5 33.6 222 7-259 235-461 (650)
28 2bcg_G Secretory pathway GDP d 99.6 6.7E-13 2.3E-17 132.6 26.8 196 7-219 93-299 (453)
29 1d5t_A Guanine nucleotide diss 99.6 1.8E-12 6.2E-17 128.7 27.1 199 7-220 85-290 (433)
30 1i8t_A UDP-galactopyranose mut 99.4 1.6E-14 5.6E-19 140.2 2.7 203 2-259 56-261 (367)
31 1v0j_A UDP-galactopyranose mut 99.4 3.1E-15 1.1E-19 147.0 -2.6 206 2-258 65-274 (399)
32 2bi7_A UDP-galactopyranose mut 99.4 6.6E-14 2.3E-18 136.8 6.4 197 2-255 60-260 (384)
33 3hdq_A UDP-galactopyranose mut 99.2 2.9E-11 9.9E-16 117.7 9.3 299 2-399 85-389 (397)
34 2e1m_C L-glutamate oxidase; L- 99.0 8.9E-11 3E-15 101.6 1.7 97 303-403 48-154 (181)
35 3dme_A Conserved exported prot 98.1 0.00014 4.7E-09 69.6 17.0 206 163-397 151-367 (369)
36 1ryi_A Glycine oxidase; flavop 98.0 0.00014 4.9E-09 70.1 16.1 196 162-399 164-361 (382)
37 1y56_B Sarcosine oxidase; dehy 98.0 0.00082 2.8E-08 64.7 20.7 204 162-400 149-355 (382)
38 2gag_B Heterotetrameric sarcos 97.9 0.0012 4.2E-08 64.0 20.3 197 163-400 175-375 (405)
39 3dje_A Fructosyl amine: oxygen 97.8 0.00033 1.1E-08 69.0 15.8 57 163-221 162-222 (438)
40 3nyc_A D-arginine dehydrogenas 97.8 0.0015 5.2E-08 62.6 19.6 56 162-220 154-209 (381)
41 2e1m_B L-glutamate oxidase; L- 97.8 2.7E-05 9.2E-10 62.5 5.0 116 204-338 3-120 (130)
42 3ps9_A TRNA 5-methylaminomethy 97.6 0.0023 7.8E-08 66.8 18.3 56 162-220 417-473 (676)
43 3cgv_A Geranylgeranyl reductas 97.6 0.0058 2E-07 58.9 20.0 61 163-225 103-168 (397)
44 3kkj_A Amine oxidase, flavin-c 97.5 0.0084 2.9E-07 53.8 19.4 88 308-404 243-330 (336)
45 3axb_A Putative oxidoreductase 97.5 0.0013 4.6E-08 64.8 14.6 61 163-226 182-259 (448)
46 2gf3_A MSOX, monomeric sarcosi 97.5 0.0043 1.5E-07 59.7 17.8 55 163-220 151-205 (389)
47 3pvc_A TRNA 5-methylaminomethy 97.5 0.0031 1.1E-07 65.9 17.6 56 162-220 412-469 (689)
48 3oz2_A Digeranylgeranylglycero 97.4 0.016 5.6E-07 55.4 20.4 60 164-225 104-168 (397)
49 3atr_A Conserved archaeal prot 97.4 0.015 5.2E-07 57.3 20.4 56 163-220 101-162 (453)
50 2e1m_A L-glutamate oxidase; L- 97.3 0.00042 1.4E-08 66.6 7.8 114 91-218 257-371 (376)
51 2rgh_A Alpha-glycerophosphate 97.3 0.028 9.7E-07 57.2 21.7 56 163-220 189-250 (571)
52 3da1_A Glycerol-3-phosphate de 97.3 0.011 3.9E-07 60.0 18.6 57 162-220 170-232 (561)
53 2gmh_A Electron transfer flavo 97.1 0.2 6.9E-06 51.0 25.8 57 163-220 145-217 (584)
54 3ihg_A RDME; flavoenzyme, anth 97.1 0.02 6.8E-07 57.8 17.6 62 163-225 121-189 (535)
55 3nix_A Flavoprotein/dehydrogen 97.0 0.019 6.4E-07 55.9 16.5 62 163-225 107-172 (421)
56 3rp8_A Flavoprotein monooxygen 96.8 0.035 1.2E-06 53.7 16.2 58 163-225 128-187 (407)
57 3e1t_A Halogenase; flavoprotei 96.6 0.09 3.1E-06 52.6 17.8 56 163-220 112-172 (512)
58 1k0i_A P-hydroxybenzoate hydro 96.3 0.19 6.6E-06 48.1 17.6 61 163-225 104-169 (394)
59 2i0z_A NAD(FAD)-utilizing dehy 96.2 0.011 3.9E-07 58.2 8.5 58 161-220 133-191 (447)
60 2qa2_A CABE, polyketide oxygen 96.0 0.41 1.4E-05 47.6 19.1 61 163-226 108-173 (499)
61 3nlc_A Uncharacterized protein 96.0 0.013 4.4E-07 59.2 8.0 56 163-220 221-277 (549)
62 2uzz_A N-methyl-L-tryptophan o 96.0 0.013 4.3E-07 56.0 7.4 55 163-220 150-204 (372)
63 3fg2_P Putative rubredoxin red 96.0 0.018 6.2E-07 55.8 8.5 57 161-219 183-240 (404)
64 2oln_A NIKD protein; flavoprot 96.0 0.012 4.2E-07 56.7 7.3 55 163-220 154-208 (397)
65 1pj5_A N,N-dimethylglycine oxi 96.0 0.016 5.3E-07 62.0 8.6 56 163-220 152-207 (830)
66 3lxd_A FAD-dependent pyridine 95.9 0.018 6.1E-07 56.1 8.4 58 161-220 193-251 (415)
67 2qa1_A PGAE, polyketide oxygen 95.9 0.38 1.3E-05 47.9 18.3 61 163-226 107-172 (500)
68 3v76_A Flavoprotein; structura 95.8 0.023 7.9E-07 55.4 8.4 62 155-220 126-187 (417)
69 3fmw_A Oxygenase; mithramycin, 95.7 0.094 3.2E-06 53.3 12.9 61 163-226 149-214 (570)
70 2cdu_A NADPH oxidase; flavoenz 95.5 0.028 9.5E-07 55.4 7.8 57 161-219 190-246 (452)
71 4at0_A 3-ketosteroid-delta4-5a 95.5 0.022 7.4E-07 57.2 7.1 57 163-220 203-264 (510)
72 1y0p_A Fumarate reductase flav 95.3 0.041 1.4E-06 56.0 8.6 57 162-219 255-316 (571)
73 3iwa_A FAD-dependent pyridine 95.1 0.061 2.1E-06 53.2 8.8 57 161-219 201-257 (472)
74 2gqf_A Hypothetical protein HI 95.0 0.046 1.6E-06 52.9 7.6 57 161-220 108-168 (401)
75 1qo8_A Flavocytochrome C3 fuma 95.0 0.046 1.6E-06 55.5 7.7 58 162-220 250-312 (566)
76 1d4d_A Flavocytochrome C fumar 94.9 0.06 2E-06 54.8 8.4 57 162-219 255-316 (572)
77 2dkh_A 3-hydroxybenzoate hydro 94.9 3 0.0001 42.7 21.2 64 163-226 142-218 (639)
78 3oc4_A Oxidoreductase, pyridin 94.7 0.059 2E-06 53.0 7.5 56 161-219 188-243 (452)
79 2cul_A Glucose-inhibited divis 94.6 0.066 2.3E-06 47.4 7.0 54 163-219 69-124 (232)
80 2ywl_A Thioredoxin reductase r 94.6 0.061 2.1E-06 45.3 6.3 54 162-219 56-109 (180)
81 1q1r_A Putidaredoxin reductase 94.4 0.093 3.2E-06 51.3 8.2 56 162-219 191-249 (431)
82 3g3e_A D-amino-acid oxidase; F 94.4 0.36 1.2E-05 45.3 12.2 187 163-402 143-335 (351)
83 1xdi_A RV3303C-LPDA; reductase 94.4 0.084 2.9E-06 52.7 7.8 57 161-220 222-279 (499)
84 2qcu_A Aerobic glycerol-3-phos 94.3 0.085 2.9E-06 52.7 7.7 56 162-220 149-210 (501)
85 2v3a_A Rubredoxin reductase; a 94.3 0.092 3.2E-06 50.3 7.6 56 162-220 187-243 (384)
86 3c4n_A Uncharacterized protein 94.2 0.033 1.1E-06 54.0 4.4 55 163-220 173-236 (405)
87 3o0h_A Glutathione reductase; 94.2 0.085 2.9E-06 52.4 7.3 55 162-219 232-287 (484)
88 3ef6_A Toluene 1,2-dioxygenase 94.0 0.082 2.8E-06 51.3 6.8 56 162-220 185-241 (410)
89 1mo9_A ORF3; nucleotide bindin 94.0 0.11 3.7E-06 52.2 7.8 57 162-219 255-315 (523)
90 1m6i_A Programmed cell death p 93.9 0.11 3.9E-06 51.6 7.8 55 162-219 226-281 (493)
91 1zk7_A HGII, reductase, mercur 93.9 0.13 4.6E-06 50.6 8.1 55 162-219 216-270 (467)
92 1trb_A Thioredoxin reductase; 93.8 0.14 4.7E-06 47.4 7.7 54 163-218 185-245 (320)
93 1fec_A Trypanothione reductase 93.7 0.12 4.1E-06 51.4 7.3 56 162-219 231-287 (490)
94 2wpf_A Trypanothione reductase 93.6 0.13 4.5E-06 51.2 7.6 56 162-219 235-291 (495)
95 4a9w_A Monooxygenase; baeyer-v 93.6 0.12 4E-06 48.6 6.8 56 163-220 77-132 (357)
96 2e4g_A Tryptophan halogenase; 93.6 0.14 4.9E-06 51.7 7.9 56 163-220 195-252 (550)
97 2bc0_A NADH oxidase; flavoprot 93.4 0.12 4.1E-06 51.4 6.9 56 161-219 235-290 (490)
98 2hqm_A GR, grase, glutathione 93.4 0.16 5.6E-06 50.3 7.9 57 161-218 225-283 (479)
99 2yqu_A 2-oxoglutarate dehydrog 93.4 0.15 5.1E-06 50.1 7.4 56 162-220 208-264 (455)
100 1ges_A Glutathione reductase; 93.3 0.17 6E-06 49.6 7.7 57 161-219 207-264 (450)
101 2weu_A Tryptophan 5-halogenase 93.2 0.19 6.5E-06 50.1 8.1 56 163-220 174-230 (511)
102 4dna_A Probable glutathione re 93.2 0.17 5.7E-06 49.9 7.5 56 161-219 210-267 (463)
103 1c0p_A D-amino acid oxidase; a 93.2 2 7E-05 40.3 15.0 45 162-221 142-186 (363)
104 1n4w_A CHOD, cholesterol oxida 93.2 0.14 4.9E-06 51.1 7.0 59 167-225 226-293 (504)
105 2wdq_A Succinate dehydrogenase 93.1 0.17 5.8E-06 51.6 7.6 58 162-220 143-206 (588)
106 2bs2_A Quinol-fumarate reducta 93.1 0.2 7E-06 51.7 8.2 57 162-220 158-220 (660)
107 3cgb_A Pyridine nucleotide-dis 93.1 0.23 7.9E-06 49.2 8.3 55 162-219 227-281 (480)
108 1rp0_A ARA6, thiazole biosynth 93.0 0.2 7E-06 45.7 7.3 55 163-219 120-190 (284)
109 2h88_A Succinate dehydrogenase 93.0 0.16 5.6E-06 52.0 7.2 57 162-220 155-217 (621)
110 2x3n_A Probable FAD-dependent 93.0 0.12 4.2E-06 49.6 6.0 62 163-226 108-173 (399)
111 1onf_A GR, grase, glutathione 92.7 0.25 8.5E-06 49.2 8.0 56 162-219 217-274 (500)
112 3d1c_A Flavin-containing putat 92.5 0.21 7E-06 47.3 6.8 54 164-220 90-143 (369)
113 2r9z_A Glutathione amide reduc 92.4 0.3 1E-05 48.1 8.0 55 162-219 207-263 (463)
114 1nhp_A NADH peroxidase; oxidor 92.4 0.18 6.3E-06 49.4 6.4 55 162-219 191-245 (447)
115 3lad_A Dihydrolipoamide dehydr 92.4 0.3 1E-05 48.2 8.0 57 161-219 220-279 (476)
116 1coy_A Cholesterol oxidase; ox 92.1 0.24 8.2E-06 49.4 7.0 59 167-225 231-298 (507)
117 2aqj_A Tryptophan halogenase, 92.1 0.31 1.1E-05 49.0 7.8 56 163-220 166-222 (538)
118 3ntd_A FAD-dependent pyridine 92.1 0.31 1E-05 49.3 7.8 57 162-219 192-266 (565)
119 2zxi_A TRNA uridine 5-carboxym 92.1 0.26 9E-06 50.2 7.1 55 163-220 124-180 (637)
120 2eq6_A Pyruvate dehydrogenase 91.9 0.39 1.3E-05 47.3 8.1 55 162-219 210-270 (464)
121 3ab1_A Ferredoxin--NADP reduct 91.8 0.29 1E-05 46.1 6.9 54 164-219 204-262 (360)
122 3itj_A Thioredoxin reductase 1 91.8 0.31 1.1E-05 45.3 7.0 51 166-218 212-269 (338)
123 3ces_A MNMG, tRNA uridine 5-ca 91.8 0.26 8.9E-06 50.4 6.8 55 163-220 125-181 (651)
124 2qae_A Lipoamide, dihydrolipoy 91.7 0.42 1.4E-05 47.0 8.2 55 162-219 215-275 (468)
125 3lzw_A Ferredoxin--NADP reduct 91.6 0.36 1.2E-05 44.6 7.2 54 163-218 68-121 (332)
126 3i3l_A Alkylhalidase CMLS; fla 91.4 0.36 1.2E-05 49.1 7.4 56 163-220 129-188 (591)
127 3nlc_A Uncharacterized protein 91.3 0.53 1.8E-05 47.4 8.4 80 315-402 463-543 (549)
128 2a8x_A Dihydrolipoyl dehydroge 91.3 0.53 1.8E-05 46.2 8.4 56 161-219 211-270 (464)
129 1kf6_A Fumarate reductase flav 91.2 0.37 1.2E-05 49.2 7.3 57 162-220 134-197 (602)
130 2e5v_A L-aspartate oxidase; ar 91.2 0.35 1.2E-05 47.8 6.9 56 162-220 119-176 (472)
131 1ojt_A Surface protein; redox- 91.1 0.3 1E-05 48.3 6.4 56 161-219 225-285 (482)
132 3cty_A Thioredoxin reductase; 91.0 0.47 1.6E-05 43.8 7.3 51 166-218 194-250 (319)
133 2pyx_A Tryptophan halogenase; 90.9 0.52 1.8E-05 47.2 8.0 56 163-220 176-233 (526)
134 3dgh_A TRXR-1, thioredoxin red 90.8 0.4 1.4E-05 47.5 6.9 56 162-219 227-288 (483)
135 1ebd_A E3BD, dihydrolipoamide 90.7 0.46 1.6E-05 46.6 7.3 56 161-219 210-269 (455)
136 1zmd_A Dihydrolipoyl dehydroge 90.7 0.49 1.7E-05 46.7 7.5 57 161-219 219-281 (474)
137 3r9u_A Thioredoxin reductase; 90.5 0.49 1.7E-05 43.3 6.9 48 169-218 190-242 (315)
138 3urh_A Dihydrolipoyl dehydroge 90.3 0.63 2.2E-05 46.1 7.9 56 161-219 238-299 (491)
139 2gqw_A Ferredoxin reductase; f 90.3 0.61 2.1E-05 45.0 7.6 51 162-219 187-238 (408)
140 1v59_A Dihydrolipoamide dehydr 90.3 0.55 1.9E-05 46.3 7.4 55 162-219 224-286 (478)
141 3dk9_A Grase, GR, glutathione 89.9 0.88 3E-05 44.8 8.6 57 161-219 227-292 (478)
142 3ics_A Coenzyme A-disulfide re 89.9 0.49 1.7E-05 48.1 6.9 55 161-219 227-281 (588)
143 3ab1_A Ferredoxin--NADP reduct 89.9 0.6 2.1E-05 43.9 7.1 55 163-219 75-130 (360)
144 3alj_A 2-methyl-3-hydroxypyrid 89.9 0.59 2E-05 44.5 7.1 58 163-226 108-167 (379)
145 1vdc_A NTR, NADPH dependent th 89.8 0.48 1.6E-05 44.0 6.3 53 163-219 71-123 (333)
146 2zbw_A Thioredoxin reductase; 89.8 0.9 3.1E-05 42.1 8.2 52 164-218 193-250 (335)
147 2bry_A NEDD9 interacting prote 89.8 0.3 1E-05 48.6 5.1 58 163-220 167-230 (497)
148 1chu_A Protein (L-aspartate ox 89.8 0.36 1.2E-05 48.6 5.6 57 163-220 139-208 (540)
149 4ap3_A Steroid monooxygenase; 89.7 0.52 1.8E-05 47.5 6.8 56 163-219 100-158 (549)
150 2zbw_A Thioredoxin reductase; 89.7 0.61 2.1E-05 43.3 7.0 54 163-219 66-120 (335)
151 3gwf_A Cyclohexanone monooxyge 89.6 0.51 1.7E-05 47.5 6.6 55 164-219 89-146 (540)
152 1dxl_A Dihydrolipoamide dehydr 89.4 0.62 2.1E-05 45.8 7.0 56 161-219 217-278 (470)
153 4b1b_A TRXR, thioredoxin reduc 89.3 0.73 2.5E-05 46.3 7.5 55 161-218 262-317 (542)
154 1fl2_A Alkyl hydroperoxide red 89.2 0.68 2.3E-05 42.4 6.8 56 163-219 57-114 (310)
155 2xve_A Flavin-containing monoo 89.0 0.6 2E-05 46.0 6.5 55 164-219 103-165 (464)
156 3h8l_A NADH oxidase; membrane 88.7 0.55 1.9E-05 45.2 5.9 52 162-219 218-269 (409)
157 2gv8_A Monooxygenase; FMO, FAD 88.5 0.66 2.3E-05 45.3 6.4 53 164-219 117-176 (447)
158 3k30_A Histamine dehydrogenase 88.3 0.33 1.1E-05 50.5 4.2 54 164-219 569-623 (690)
159 3cp8_A TRNA uridine 5-carboxym 88.2 0.71 2.4E-05 47.2 6.5 55 163-220 118-174 (641)
160 1pn0_A Phenol 2-monooxygenase; 88.2 25 0.00086 36.0 19.2 38 365-402 351-390 (665)
161 1jnr_A Adenylylsulfate reducta 88.0 0.89 3.1E-05 46.8 7.3 56 163-220 152-218 (643)
162 4g6h_A Rotenone-insensitive NA 87.8 0.77 2.6E-05 45.7 6.4 57 159-218 269-330 (502)
163 3ic9_A Dihydrolipoamide dehydr 87.7 1.3 4.6E-05 43.8 8.1 54 162-219 215-273 (492)
164 3dgz_A Thioredoxin reductase 2 87.6 1.2 4.2E-05 44.0 7.8 56 162-219 225-286 (488)
165 2vou_A 2,6-dihydroxypyridine h 87.5 0.98 3.3E-05 43.2 6.9 58 164-226 101-160 (397)
166 3klj_A NAD(FAD)-dependent dehy 87.5 0.79 2.7E-05 43.8 6.1 46 168-218 68-114 (385)
167 3kd9_A Coenzyme A disulfide re 87.3 0.99 3.4E-05 44.1 6.9 56 160-219 188-243 (449)
168 3uox_A Otemo; baeyer-villiger 87.3 0.77 2.6E-05 46.2 6.2 55 164-219 89-146 (545)
169 1fl2_A Alkyl hydroperoxide red 87.2 1.1 3.8E-05 40.9 6.8 51 166-218 183-240 (310)
170 1y56_A Hypothetical protein PH 87.0 0.74 2.5E-05 45.7 5.8 50 168-220 263-313 (493)
171 3s5w_A L-ornithine 5-monooxyge 86.9 1.9 6.6E-05 42.0 8.7 42 175-219 329-376 (463)
172 2q0l_A TRXR, thioredoxin reduc 86.8 1.2 4.1E-05 40.7 6.9 53 163-219 60-113 (311)
173 3h28_A Sulfide-quinone reducta 86.7 0.42 1.4E-05 46.5 3.8 50 164-218 202-254 (430)
174 3fpz_A Thiazole biosynthetic e 86.2 0.3 1E-05 45.5 2.3 42 361-402 280-325 (326)
175 3f8d_A Thioredoxin reductase ( 85.9 1.1 3.9E-05 41.0 6.1 53 163-219 71-124 (323)
176 3itj_A Thioredoxin reductase 1 85.8 1.3 4.5E-05 40.8 6.6 53 163-219 85-141 (338)
177 1hyu_A AHPF, alkyl hydroperoxi 85.3 1.3 4.6E-05 44.1 6.7 56 163-219 268-325 (521)
178 2q0l_A TRXR, thioredoxin reduc 85.1 2.2 7.5E-05 38.9 7.7 50 167-218 183-239 (311)
179 1kdg_A CDH, cellobiose dehydro 84.9 1.9 6.4E-05 43.3 7.7 58 168-227 201-268 (546)
180 3gyx_A Adenylylsulfate reducta 84.8 1.2 4.1E-05 45.9 6.2 57 163-219 167-232 (662)
181 1w4x_A Phenylacetone monooxyge 84.8 1.5 5E-05 44.1 6.7 55 164-219 96-153 (542)
182 3cty_A Thioredoxin reductase; 84.5 1.8 6.1E-05 39.8 6.8 53 163-219 73-125 (319)
183 3lzw_A Ferredoxin--NADP reduct 84.0 1.7 6E-05 39.9 6.5 49 167-218 194-248 (332)
184 1lvl_A Dihydrolipoamide dehydr 83.9 1.2 4.1E-05 43.6 5.5 53 162-219 212-267 (458)
185 2xdo_A TETX2 protein; tetracyc 83.8 0.86 2.9E-05 43.6 4.4 52 164-220 130-182 (398)
186 4gcm_A TRXR, thioredoxin reduc 83.5 1.6 5.5E-05 40.0 6.0 52 164-219 64-115 (312)
187 3d1c_A Flavin-containing putat 83.5 1.7 5.7E-05 40.8 6.2 53 164-219 216-271 (369)
188 3s5w_A L-ornithine 5-monooxyge 83.4 1.3 4.4E-05 43.3 5.6 55 164-218 129-190 (463)
189 1vdc_A NTR, NADPH dependent th 83.3 2.5 8.6E-05 38.9 7.3 47 172-218 205-257 (333)
190 3jsk_A Cypbp37 protein; octame 83.2 2.7 9.2E-05 39.4 7.3 57 164-220 162-251 (344)
191 1trb_A Thioredoxin reductase; 82.8 2.5 8.5E-05 38.7 7.0 53 163-219 63-115 (320)
192 2gjc_A Thiazole biosynthetic e 81.8 4 0.00014 37.9 7.9 39 164-202 148-191 (326)
193 2jbv_A Choline oxidase; alcoho 81.7 1.5 5.3E-05 44.0 5.4 52 174-226 221-279 (546)
194 2q7v_A Thioredoxin reductase; 81.7 3.6 0.00012 37.8 7.7 50 166-218 191-247 (325)
195 3c96_A Flavin-containing monoo 81.5 2.4 8.3E-05 40.6 6.6 60 164-226 109-176 (410)
196 4eqs_A Coenzyme A disulfide re 81.4 2.1 7.1E-05 41.6 6.1 53 161-219 187-239 (437)
197 3fbs_A Oxidoreductase; structu 81.1 1.6 5.6E-05 39.3 5.0 53 163-219 57-111 (297)
198 3hyw_A Sulfide-quinone reducta 80.6 1 3.5E-05 43.7 3.6 51 164-219 202-255 (430)
199 3f8d_A Thioredoxin reductase ( 80.6 3.7 0.00013 37.4 7.3 48 168-218 195-249 (323)
200 3sx6_A Sulfide-quinone reducta 80.4 2.5 8.5E-05 41.0 6.3 51 164-218 210-267 (437)
201 3vrd_B FCCB subunit, flavocyto 79.9 0.7 2.4E-05 44.3 2.1 44 172-218 212-256 (401)
202 2q7v_A Thioredoxin reductase; 79.8 3.4 0.00012 37.9 6.8 55 163-219 66-122 (325)
203 4fk1_A Putative thioredoxin re 79.0 2.3 8E-05 38.7 5.4 42 359-402 259-300 (304)
204 2a87_A TRXR, TR, thioredoxin r 78.9 3 0.0001 38.5 6.2 52 163-219 72-125 (335)
205 1xhc_A NADH oxidase /nitrite r 78.6 2.6 9E-05 39.8 5.7 50 162-219 183-233 (367)
206 3r9u_A Thioredoxin reductase; 78.3 3.2 0.00011 37.6 6.1 53 163-218 63-116 (315)
207 3pl8_A Pyranose 2-oxidase; sub 77.8 2.9 9.9E-05 42.7 6.0 52 175-226 273-330 (623)
208 2cul_A Glucose-inhibited divis 77.5 2.1 7.2E-05 37.4 4.3 37 362-402 196-232 (232)
209 1xhc_A NADH oxidase /nitrite r 76.6 3.5 0.00012 38.9 5.9 44 170-218 68-111 (367)
210 3ces_A MNMG, tRNA uridine 5-ca 76.1 3.6 0.00012 42.1 6.0 53 363-422 383-435 (651)
211 1ps9_A 2,4-dienoyl-COA reducta 75.6 6.9 0.00024 40.3 8.3 51 164-219 575-627 (671)
212 3fbs_A Oxidoreductase; structu 75.0 4.7 0.00016 36.1 6.2 41 360-403 253-293 (297)
213 4hb9_A Similarities with proba 74.8 3.2 0.00011 39.4 5.2 50 174-225 121-172 (412)
214 2r0c_A REBC; flavin adenine di 74.4 5.3 0.00018 40.0 6.8 58 164-226 140-203 (549)
215 4a5l_A Thioredoxin reductase; 73.9 3.5 0.00012 37.5 5.0 52 164-218 68-119 (314)
216 1hyu_A AHPF, alkyl hydroperoxi 73.8 5.1 0.00017 39.9 6.5 49 167-217 395-450 (521)
217 3qfa_A Thioredoxin reductase 1 73.3 7.4 0.00025 38.6 7.6 59 161-219 249-314 (519)
218 2zxi_A TRNA uridine 5-carboxym 73.2 4.8 0.00016 41.0 6.1 53 363-422 388-440 (637)
219 1q1r_A Putidaredoxin reductase 73.1 4.7 0.00016 39.0 5.9 45 170-219 68-113 (431)
220 1cjc_A Protein (adrenodoxin re 72.8 5.7 0.0002 38.8 6.5 43 175-218 270-331 (460)
221 3cp8_A TRNA uridine 5-carboxym 72.4 3.8 0.00013 41.8 5.2 53 363-422 377-429 (641)
222 3h8l_A NADH oxidase; membrane 72.3 5.3 0.00018 38.1 6.1 41 363-404 298-338 (409)
223 4a9w_A Monooxygenase; baeyer-v 72.2 4.3 0.00015 37.5 5.3 42 360-403 310-353 (357)
224 4fk1_A Putative thioredoxin re 71.7 6.5 0.00022 35.7 6.3 55 164-219 62-116 (304)
225 2ywl_A Thioredoxin reductase r 71.7 5.5 0.00019 32.8 5.3 41 360-402 131-171 (180)
226 3l8k_A Dihydrolipoyl dehydroge 70.9 6.2 0.00021 38.5 6.3 51 164-219 216-271 (466)
227 3ef6_A Toluene 1,2-dioxygenase 70.2 5 0.00017 38.5 5.3 44 171-219 66-110 (410)
228 1ju2_A HydroxynitrIle lyase; f 69.4 6.1 0.00021 39.4 5.9 56 172-227 204-268 (536)
229 3qvp_A Glucose oxidase; oxidor 68.7 8.8 0.0003 38.8 6.9 54 173-226 238-299 (583)
230 2bc0_A NADH oxidase; flavoprot 68.4 7 0.00024 38.4 6.1 47 170-219 100-148 (490)
231 2gag_A Heterotetrameric sarcos 68.0 6.4 0.00022 42.5 6.1 49 169-218 323-381 (965)
232 2a87_A TRXR, TR, thioredoxin r 67.1 6.1 0.00021 36.4 5.1 40 361-402 277-316 (335)
233 2v3a_A Rubredoxin reductase; a 65.9 10 0.00035 35.7 6.5 45 170-219 68-112 (384)
234 1o94_A Tmadh, trimethylamine d 65.8 4.8 0.00016 42.0 4.4 49 166-219 575-645 (729)
235 2vdc_G Glutamate synthase [NAD 64.6 9.4 0.00032 37.2 6.1 41 360-403 405-445 (456)
236 1chu_A Protein (L-aspartate ox 64.5 14 0.00047 36.9 7.4 43 360-402 363-411 (540)
237 4b63_A L-ornithine N5 monooxyg 64.4 9.7 0.00033 37.6 6.2 55 164-218 147-212 (501)
238 3ics_A Coenzyme A-disulfide re 64.0 7.4 0.00025 39.3 5.4 50 166-218 97-150 (588)
239 1nhp_A NADH peroxidase; oxidor 63.8 12 0.00042 36.1 6.8 47 170-219 64-114 (447)
240 3oc4_A Oxidoreductase, pyridin 63.8 11 0.00036 36.6 6.3 46 170-218 66-113 (452)
241 2cdu_A NADPH oxidase; flavoenz 62.7 12 0.00041 36.2 6.5 46 170-218 66-115 (452)
242 3q9t_A Choline dehydrogenase a 62.4 6.7 0.00023 39.6 4.6 53 174-226 218-276 (577)
243 3lxd_A FAD-dependent pyridine 62.2 8.4 0.00029 36.8 5.2 45 169-218 72-117 (415)
244 1gte_A Dihydropyrimidine dehyd 62.0 18 0.00062 39.2 8.2 48 169-218 377-440 (1025)
245 3g5s_A Methylenetetrahydrofola 61.8 9.5 0.00032 36.5 5.2 91 320-422 287-378 (443)
246 2gqw_A Ferredoxin reductase; f 61.7 6.6 0.00023 37.5 4.3 41 173-218 70-111 (408)
247 1gpe_A Protein (glucose oxidas 61.1 7.9 0.00027 39.1 4.9 54 173-226 242-303 (587)
248 3ntd_A FAD-dependent pyridine 60.8 14 0.00046 37.0 6.6 44 172-218 68-115 (565)
249 3cgb_A Pyridine nucleotide-dis 60.3 16 0.00055 35.7 6.9 43 174-219 105-151 (480)
250 4eqs_A Coenzyme A disulfide re 60.0 13 0.00043 36.0 6.0 47 170-219 65-115 (437)
251 2x8g_A Thioredoxin glutathione 59.9 17 0.00058 36.7 7.2 58 162-219 326-394 (598)
252 3fim_B ARYL-alcohol oxidase; A 59.7 9.3 0.00032 38.4 5.1 55 173-227 219-283 (566)
253 2i0z_A NAD(FAD)-utilizing dehy 58.7 9.4 0.00032 37.0 4.9 40 362-401 402-443 (447)
254 3hyw_A Sulfide-quinone reducta 58.3 9.3 0.00032 36.8 4.7 42 172-219 66-108 (430)
255 1lqt_A FPRA; NADP+ derivative, 56.1 12 0.0004 36.5 5.0 50 166-218 250-324 (456)
256 2vdc_G Glutamate synthase [NAD 55.6 7.2 0.00024 38.1 3.4 47 170-219 310-377 (456)
257 3iwa_A FAD-dependent pyridine 55.2 14 0.00048 35.9 5.5 42 174-218 78-123 (472)
258 3h28_A Sulfide-quinone reducta 55.0 22 0.00074 34.1 6.7 43 360-403 281-334 (430)
259 1m6i_A Programmed cell death p 54.3 8.4 0.00029 37.9 3.7 40 174-218 102-142 (493)
260 4a5l_A Thioredoxin reductase; 53.4 27 0.00092 31.3 6.8 40 360-401 272-311 (314)
261 1ebd_A E3BD, dihydrolipoamide 52.7 23 0.00079 34.2 6.5 50 164-219 93-144 (455)
262 2gqf_A Hypothetical protein HI 52.5 9.7 0.00033 36.3 3.7 37 362-398 361-399 (401)
263 3t37_A Probable dehydrogenase; 52.1 15 0.00051 36.3 5.2 51 175-227 224-278 (526)
264 3fg2_P Putative rubredoxin red 52.0 20 0.00069 34.0 5.9 44 169-218 64-108 (404)
265 3uox_A Otemo; baeyer-villiger 51.5 12 0.0004 37.5 4.3 46 169-221 345-392 (545)
266 3sx6_A Sulfide-quinone reducta 51.3 24 0.00082 33.8 6.4 47 167-219 64-111 (437)
267 3dgz_A Thioredoxin reductase 2 47.7 25 0.00085 34.4 5.9 39 360-400 314-352 (488)
268 2a8x_A Dihydrolipoyl dehydroge 47.6 28 0.00095 33.7 6.2 50 164-219 93-145 (464)
269 4dna_A Probable glutathione re 47.0 26 0.00089 33.9 5.9 38 360-400 294-331 (463)
270 3dgh_A TRXR-1, thioredoxin red 46.7 23 0.00079 34.5 5.5 39 360-400 314-352 (483)
271 3gwf_A Cyclohexanone monooxyge 46.3 9.5 0.00032 38.1 2.6 45 172-222 340-386 (540)
272 3vrd_B FCCB subunit, flavocyto 45.9 20 0.0007 33.8 4.8 39 362-401 284-323 (401)
273 3kd9_A Coenzyme A disulfide re 45.3 22 0.00074 34.3 5.0 41 173-218 70-112 (449)
274 3l8k_A Dihydrolipoyl dehydroge 45.2 25 0.00085 34.1 5.4 38 360-400 296-333 (466)
275 3o0h_A Glutathione reductase; 44.8 30 0.001 33.7 6.0 38 360-400 314-351 (484)
276 3ic9_A Dihydrolipoamide dehydr 44.3 23 0.00079 34.7 5.1 39 359-400 300-338 (492)
277 3dk9_A Grase, GR, glutathione 44.1 28 0.00095 33.8 5.6 38 360-400 319-356 (478)
278 1y56_A Hypothetical protein PH 44.1 18 0.00061 35.5 4.2 37 363-403 342-378 (493)
279 3qfa_A Thioredoxin reductase 1 43.7 31 0.001 34.1 5.9 39 360-400 342-380 (519)
280 1dxl_A Dihydrolipoamide dehydr 43.2 34 0.0011 33.1 6.0 37 360-399 305-341 (470)
281 3lad_A Dihydrolipoamide dehydr 42.7 31 0.0011 33.5 5.7 38 360-400 306-343 (476)
282 3klj_A NAD(FAD)-dependent dehy 41.7 20 0.00067 33.9 4.0 40 360-400 253-294 (385)
283 3urh_A Dihydrolipoyl dehydroge 40.4 29 0.00099 33.9 5.1 38 360-400 326-363 (491)
284 1v59_A Dihydrolipoamide dehydr 40.4 35 0.0012 33.1 5.7 38 360-400 313-350 (478)
285 4gcm_A TRXR, thioredoxin reduc 39.2 49 0.0017 29.6 6.2 42 359-402 265-306 (312)
286 1ojt_A Surface protein; redox- 39.1 39 0.0013 32.8 5.8 37 360-399 312-348 (482)
287 2x8g_A Thioredoxin glutathione 39.0 37 0.0013 34.1 5.8 39 360-400 421-459 (598)
288 2gjc_A Thiazole biosynthetic e 39.0 21 0.00073 32.9 3.6 40 363-402 282-325 (326)
289 3v76_A Flavoprotein; structura 38.8 17 0.00059 34.8 3.0 35 362-396 380-416 (417)
290 2hqm_A GR, grase, glutathione 38.5 37 0.0013 33.0 5.5 37 360-399 310-346 (479)
291 1gte_A Dihydropyrimidine dehyd 38.0 29 0.001 37.6 5.0 40 360-402 469-508 (1025)
292 1ges_A Glutathione reductase; 37.2 41 0.0014 32.3 5.6 37 360-399 291-327 (450)
293 1qo8_A Flavocytochrome C3 fuma 36.7 22 0.00075 35.6 3.5 41 362-402 519-564 (566)
294 1d4d_A Flavocytochrome C fumar 36.3 20 0.00068 36.0 3.2 40 362-401 525-569 (572)
295 2qae_A Lipoamide, dihydrolipoy 36.1 51 0.0017 31.8 6.0 38 360-399 302-339 (468)
296 1zmd_A Dihydrolipoyl dehydroge 35.9 38 0.0013 32.8 5.1 37 360-399 308-344 (474)
297 1kf6_A Fumarate reductase flav 34.1 32 0.0011 34.8 4.3 43 359-401 367-415 (602)
298 2r9z_A Glutathione amide reduc 34.0 51 0.0017 31.9 5.6 37 360-399 290-326 (463)
299 2wpf_A Trypanothione reductase 33.9 51 0.0017 32.2 5.6 37 360-399 318-354 (495)
300 4ap3_A Steroid monooxygenase; 33.8 24 0.00083 35.2 3.3 43 172-221 353-397 (549)
301 1fec_A Trypanothione reductase 33.6 51 0.0018 32.1 5.6 37 360-399 314-350 (490)
302 1xdi_A RV3303C-LPDA; reductase 33.4 42 0.0015 32.8 5.0 37 360-399 305-341 (499)
303 1lqt_A FPRA; NADP+ derivative, 33.1 31 0.001 33.5 3.8 39 362-402 349-387 (456)
304 2eq6_A Pyruvate dehydrogenase 33.1 44 0.0015 32.3 5.0 37 360-399 297-333 (464)
305 2yqu_A 2-oxoglutarate dehydrog 32.6 57 0.002 31.3 5.7 38 360-400 290-327 (455)
306 1zk7_A HGII, reductase, mercur 32.1 47 0.0016 32.1 5.0 37 360-399 297-333 (467)
307 4b1b_A TRXR, thioredoxin reduc 32.0 42 0.0014 33.4 4.7 39 360-400 346-384 (542)
308 1mo9_A ORF3; nucleotide bindin 31.9 47 0.0016 32.7 5.0 37 360-399 341-377 (523)
309 1y0p_A Fumarate reductase flav 31.6 26 0.00089 35.0 3.1 40 362-401 524-568 (571)
310 3jsk_A Cypbp37 protein; octame 31.6 27 0.00093 32.5 3.0 39 364-402 293-335 (344)
311 1rp0_A ARA6, thiazole biosynth 30.7 32 0.0011 30.8 3.3 40 364-403 233-276 (284)
312 1cjc_A Protein (adrenodoxin re 30.5 34 0.0012 33.1 3.7 38 364-403 359-396 (460)
313 3k30_A Histamine dehydrogenase 30.4 24 0.00083 36.3 2.7 37 362-402 639-675 (690)
314 1jnr_A Adenylylsulfate reducta 30.3 49 0.0017 33.6 5.0 40 361-401 428-467 (643)
315 2gag_A Heterotetrameric sarcos 29.5 47 0.0016 35.7 4.9 38 362-403 408-445 (965)
316 1lvl_A Dihydrolipoamide dehydr 29.5 45 0.0015 32.2 4.3 37 360-399 293-329 (458)
317 2h88_A Succinate dehydrogenase 27.6 65 0.0022 32.6 5.3 41 362-402 387-433 (621)
318 4g6h_A Rotenone-insensitive NA 26.1 64 0.0022 31.6 4.8 41 359-400 358-399 (502)
319 3c4a_A Probable tryptophan hyd 25.8 23 0.0008 33.1 1.5 46 164-223 100-145 (381)
320 2bs2_A Quinol-fumarate reducta 25.6 54 0.0018 33.5 4.2 43 359-401 380-428 (660)
321 4at0_A 3-ketosteroid-delta4-5a 25.3 34 0.0011 33.7 2.6 38 362-399 466-508 (510)
322 1onf_A GR, grase, glutathione 24.3 68 0.0023 31.3 4.6 47 166-218 93-151 (500)
323 1w4x_A Phenylacetone monooxyge 24.0 55 0.0019 32.4 3.9 44 170-220 346-391 (542)
324 1o94_A Tmadh, trimethylamine d 21.9 34 0.0012 35.4 1.9 37 362-402 664-700 (729)
325 4hb9_A Similarities with proba 20.3 93 0.0032 28.8 4.6 39 365-403 311-351 (412)
No 1
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=100.00 E-value=4.3e-30 Score=255.82 Aligned_cols=312 Identities=12% Similarity=0.085 Sum_probs=231.1
Q ss_pred CCChhhhhhhhhhHHHHhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHH
Q 013390 64 RLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI 143 (444)
Q Consensus 64 ~ls~~~kl~~~~l~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~ 143 (444)
.+++.++.++...+... + . ...++.|+.+|++++ ++++..+.++.+++...++.+++++|+..++..+...
T Consensus 112 ~~~~~~~~~~~~~~~~~-~---~----~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 182 (425)
T 3ka7_A 112 LLSYKDRMKIALLIVST-R---K----NRPSGSSLQAWIKSQ-VSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENM 182 (425)
T ss_dssp GSCHHHHHHHHHHHHHT-T---T----SCCCSSBHHHHHHHH-CCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhh-h---h----cCCCCCCHHHHHHHh-cCCHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHH
Confidence 46788888765533221 1 0 124689999999998 4555688899999999999999999999888887764
Q ss_pred HHhcCCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHH
Q 013390 144 ILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 223 (444)
Q Consensus 144 ~~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ 223 (444)
. .. + ...++.||+. .++++|++.+++.|++|++|++|++|..++ +++++|.++|++++||+||+|+|++.+.+
T Consensus 183 ~-~~-~--~~~~~~gG~~-~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~gv~~~g~~~~ad~VV~a~~~~~~~~ 255 (425)
T 3ka7_A 183 Y-RF-G--GTGIPEGGCK-GIIDALETVISANGGKIHTGQEVSKILIEN--GKAAGIIADDRIHDADLVISNLGHAATAV 255 (425)
T ss_dssp H-HH-C--SCEEETTSHH-HHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTEEEECSEEEECSCHHHHHH
T ss_pred H-hc-C--CccccCCCHH-HHHHHHHHHHHHcCCEEEECCceeEEEEEC--CEEEEEEECCEEEECCEEEECCCHHHHHH
Confidence 3 21 1 2367899965 599999999999999999999999999987 67887888899999999999999999999
Q ss_pred hhhccC-CC-ChHHHHHhhcCCCccEEEEEEEeccCCCCCCCCceeeccCCCcccceeeccccccccCCCCCeEEEEEEe
Q 013390 224 LIKNSI-LC-NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY 301 (444)
Q Consensus 224 ll~~~~-l~-~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 301 (444)
|+++.. ++ +..+.+.++++.+.+.+++++++++++. . .+..+++.+......+...+...+..++++.+++.+.+.
T Consensus 256 ll~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~s~~~p~~ap~G~~~l~~~~~ 333 (425)
T 3ka7_A 256 LCSEALSKEADAAYFKMVGTLQPSAGIKICLAADEPLV-G-HTGVLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQY 333 (425)
T ss_dssp HTTTTCCTTTTHHHHHHHHHCCCBEEEEEEEEESSCSS-C-SSSEEECCSSSSEEEEECGGGTCGGGSCTTCEEEEEEEE
T ss_pred hcCCcccccCCHHHHHHhhCcCCCceEEEEeecCCCcc-C-cCEEEECCChhhcceEEeccCCCCCcCCCCCeEEEEEec
Confidence 987532 21 2445577888888888999999999865 2 233344332221111233455556666667777766544
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCCCCCCCEEEeecccccCCCcc
Q 013390 302 HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSW 381 (444)
Q Consensus 302 ~~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~~~~~~l~laGd~~~~~~~~~ 381 (444)
...+..+. .++.++.++++|++++|+.. +....+.+|+.++|.+.+|+. .++...+|++|||+||||+.+.++ .
T Consensus 334 ~~~~~~~~-~~~~~~~~~~~l~~~~p~~~---~~~~~v~~~~~~~P~~~~~~~-~~~~~~~p~~gL~laG~~~~~~gg-~ 407 (425)
T 3ka7_A 334 VAPENVKN-LESEIEMGLEDLKEIFPGKR---YEVLLIQSYHDEWPVNRAASG-TDPGNETPFSGLYVVGDGAKGKGG-I 407 (425)
T ss_dssp ECGGGGGG-HHHHHHHHHHHHHHHSTTCC---EEEEEEEEEBTTBCSBSSCTT-CCCCSBCSSBTEEECSTTSCCTTC-C
T ss_pred cccccccc-hHHHHHHHHHHHHHhCCCCc---eEEEEEEEECCCccccccccC-CCCCCCCCcCCeEEeCCccCCCCC-C
Confidence 32221122 34557999999999999843 334467899999999999854 457778899999999999997777 7
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 013390 382 SQERSYVTGLEAANRVVD 399 (444)
Q Consensus 382 ~~egAv~SG~~aA~~il~ 399 (444)
+|++|+.||++||++|+.
T Consensus 408 gv~~~~~s~~~~~~~i~~ 425 (425)
T 3ka7_A 408 EVEGVALGVMSVMEKVLG 425 (425)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred ccHHHHHHHHHHHHHhhC
Confidence 999999999999998863
No 2
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=99.97 E-value=1.8e-29 Score=257.88 Aligned_cols=309 Identities=16% Similarity=0.103 Sum_probs=222.0
Q ss_pred hccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHH-----HHhcCCCcceeeecCCcchhhHH
Q 013390 92 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI-----ILAHQKNFDLVWCRGTLREKIFE 166 (444)
Q Consensus 92 ~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~-----~~~~~~~~~~~~~~gg~~~~l~~ 166 (444)
.++++|+.+|+++.+.++. .+.++.+++.+.++.+++++|+..++.++... ++....+....++.||++ .|++
T Consensus 142 ~~~~~s~~~~l~~~~~~~~-~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gG~~-~l~~ 219 (520)
T 1s3e_A 142 EWDNMTMKELLDKLCWTES-AKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSG-QVSE 219 (520)
T ss_dssp HHHTSBHHHHHHHHCSSHH-HHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTH-HHHH
T ss_pred hhhccCHHHHHHhhCCCHH-HHHHHHHHHhhhcCCChHHhHHHHHHHHHhhcCchhhhcccCCCcceEEEeCCHH-HHHH
Confidence 4688999999999877776 57899999999999999999999887665421 011112233456789965 5999
Q ss_pred HHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhHHHhhhccCCCChHHHHHhhcCCCc
Q 013390 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASI 245 (444)
Q Consensus 167 ~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~l~~l~~~ 245 (444)
++++.+ |++|++|++|++|..++ ++|+ |.+. |++++||+||+|+|++++.+++.++.++ ....+.++++.+.
T Consensus 220 ~l~~~l---g~~i~~~~~V~~i~~~~--~~v~-v~~~~g~~~~ad~VI~a~p~~~l~~l~~~p~lp-~~~~~~i~~~~~~ 292 (520)
T 1s3e_A 220 RIMDLL---GDRVKLERPVIYIDQTR--ENVL-VETLNHEMYEAKYVISAIPPTLGMKIHFNPPLP-MMRNQMITRVPLG 292 (520)
T ss_dssp HHHHHH---GGGEESSCCEEEEECSS--SSEE-EEETTSCEEEESEEEECSCGGGGGGSEEESCCC-HHHHHHTTSCCBC
T ss_pred HHHHHc---CCcEEcCCeeEEEEECC--CeEE-EEECCCeEEEeCEEEECCCHHHHcceeeCCCCC-HHHHHHHHhCCCc
Confidence 988755 78999999999999877 4576 6664 7789999999999999998887666553 3444678889999
Q ss_pred cEEEEEEEeccCCCCCCCCcee-e-ccCCCcccceeeccccccccCCCCCeEEEEEEec--CCCCCCCCHHHHHHHHHHH
Q 013390 246 DVVSVKLWFDKKVTVPNVSNAC-S-GFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSY 321 (444)
Q Consensus 246 ~~~~v~l~~d~~~~~~~~~~~~-~-g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ee~~~~~l~~ 321 (444)
++.++++.|++++|....+... + .........++|.+.. +.+..++...+.. +..|..++++++++.++++
T Consensus 293 ~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~~~d~~~~-----~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~vl~~ 367 (520)
T 1s3e_A 293 SVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKP-----EGNYAAIMGFILAHKARKLARLTKEERLKKLCEL 367 (520)
T ss_dssp CEEEEEEECSSCGGGGGTEEEEEEECSTTCSCSEEEECCCT-----TSCSCEEEEEEETHHHHHHTTSCHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCcccCCCCCceeeccCCCCceEEEeeCCCC-----CCCCCEEEEEccchhhhhhhcCCHHHHHHHHHHH
Confidence 9999999999998843332111 1 0111222234554321 1122344333322 3457778999999999999
Q ss_pred HHhhccCCCCCeeeeEEEEEeCCCcc-------ccCCCCCC-CCCCCCCCCCCEEEeecccccCCCcchhhHHHHHHHHH
Q 013390 322 LSKCIKDFSTATVMDHKIRRFPKSLT-------HFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEA 393 (444)
Q Consensus 322 l~~~~p~~~~~~~~~~~v~r~~~~~~-------~~~pg~~~-~~p~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~a 393 (444)
|+++||......+.+..+++|..+.+ .+.||... +++..++|++||||||+++++.|+ ++||||+.||++|
T Consensus 368 L~~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~~L~fAG~~t~~~~~-g~v~GAi~SG~~a 446 (520)
T 1s3e_A 368 YAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWS-GYMEGAVEAGERA 446 (520)
T ss_dssp HHHHHTCGGGGCCSEEEEEEGGGCTTTCSSSCBCCCTTHHHHHGGGTTCCBTTEEECSGGGCSSST-TSHHHHHHHHHHH
T ss_pred HHHHhCccccCCccEEEEEeeCCCCCCCCCCccccCCCccccchHHHhCCCCCEEEeehhhcCcCc-EEhHHHHHHHHHH
Confidence 99999853212567777888964321 24455431 244566789999999999987788 7999999999999
Q ss_pred HHHHHHHhCCCCccccccCCCC
Q 013390 394 ANRVVDYLGDGSFSKIIPVEED 415 (444)
Q Consensus 394 A~~il~~lg~~~~~~~~~~~~~ 415 (444)
|++|++.+++..+..+|..++.
T Consensus 447 A~~i~~~l~~~~~~~~~~~~~~ 468 (520)
T 1s3e_A 447 AREILHAMGKIPEDEIWQSEPE 468 (520)
T ss_dssp HHHHHHHTTSSCGGGSSCCCCC
T ss_pred HHHHHHHHhcCccccccccCCc
Confidence 9999999987666677776553
No 3
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=99.96 E-value=1.3e-28 Score=248.13 Aligned_cols=367 Identities=14% Similarity=0.162 Sum_probs=240.0
Q ss_pred ccccCCChhHHHHHHHhCCCCCCCCc--ccceeccCCccccccccccCCC---CCCCccccccccCCCCChhhhhhhhhh
Q 013390 2 QGFWYPFRNIFSLVDELGIKPFTGWM--KSAQYSEEGLEVEFPIFQDLNQ---LPTPLGTLFYTQFSRLPLVDRLTSLPL 76 (444)
Q Consensus 2 h~~~~~~~~~~~Ll~elGl~~~~~~~--~~~~~~~~G~~~~~~~~~~~~~---~p~p~~~~~~~~~~~ls~~~kl~~~~l 76 (444)
|.+...++++++|++++|++...... ...+...+|+... +|. +..|.++..+++...+++.++++.+.-
T Consensus 65 ~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 138 (470)
T 3i6d_A 65 DSFLERKKSAPQLVKDLGLEHLLVNNATGQSYVLVNRTLHP------MPKGAVMGIPTKIAPFVSTGLFSLSGKARAAMD 138 (470)
T ss_dssp CCEETTCTHHHHHHHHTTCCTTEEECCCCCEEEECSSCEEE------CCC---------------------CCSHHHHHH
T ss_pred hhhhhCCHHHHHHHHHcCCcceeecCCCCccEEEECCEEEE------CCCCcccCCcCchHHhhccCcCCHHHHHHHhcC
Confidence 56778899999999999998765432 1223334565321 111 112333333455566777777764321
Q ss_pred HHHHhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHH------Hhc---
Q 013390 77 MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII------LAH--- 147 (444)
Q Consensus 77 ~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~------~~~--- 147 (444)
.+ .. . ....+++|+.+|+++. ++.+..+.++.|++.++++.+++++|+...+..+..+. ...
T Consensus 139 --~~-~~--~---~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 209 (470)
T 3i6d_A 139 --FI-LP--A---SKTKDDQSLGEFFRRR-VGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKK 209 (470)
T ss_dssp --HH-SC--C---CSSSSCCBHHHHHHHH-SCHHHHHHTHHHHHHHTTCSCTTTBBHHHHCGGGCC--------------
T ss_pred --cc-cC--C---CCCCCCcCHHHHHHHh-cCHHHHHHhccchhcEEecCCHHHhhHHHHHHHHHHHHHhcCcHHHHHHh
Confidence 11 10 1 1236889999999986 78888999999999999999999999987766543210 000
Q ss_pred ------------CCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEE
Q 013390 148 ------------QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVL 214 (444)
Q Consensus 148 ------------~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~ 214 (444)
.....+..++||+. .|++.|++.+.+ ++|++|++|++|+.++ ++++ |.++ |++++||+||+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~g~~-~l~~~l~~~l~~--~~i~~~~~V~~i~~~~--~~~~-v~~~~g~~~~ad~vi~ 283 (470)
T 3i6d_A 210 TRPQGSGQQLTAKKQGQFQTLSTGLQ-TLVEEIEKQLKL--TKVYKGTKVTKLSHSG--SCYS-LELDNGVTLDADSVIV 283 (470)
T ss_dssp -----------------EEEETTCTH-HHHHHHHHTCCS--EEEECSCCEEEEEECS--SSEE-EEESSSCEEEESEEEE
T ss_pred hccccccccccccCCceEEEeCChHH-HHHHHHHHhcCC--CEEEeCCceEEEEEcC--CeEE-EEECCCCEEECCEEEE
Confidence 00123456789965 488888876643 7999999999999887 4465 6665 77899999999
Q ss_pred ccChhhHHHhhhccCCCChHHHHHhhcCCCccEEEEEEEeccCCCCCCC--CceeeccCCCc--ccceeeccccccccCC
Q 013390 215 AVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNV--SNACSGFGDSL--AWTFFDLNKIYDEHKD 290 (444)
Q Consensus 215 a~p~~~~~~ll~~~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~--~~~~~g~~~~~--~~~~~d~~~~~~~~~~ 290 (444)
|+|++++.+++.+++ ....++.+.+.++.++++.|++++|.... +..+....... ...+|+.. ..+...+
T Consensus 284 a~p~~~~~~l~~~~~-----~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~-~~~~~~p 357 (470)
T 3i6d_A 284 TAPHKAAAGMLSELP-----AISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNK-KWPHAAP 357 (470)
T ss_dssp CSCHHHHHHHTTTST-----THHHHHTCEEEEEEEEEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEHHH-HCGGGSC
T ss_pred CCCHHHHHHHcCCch-----hhHHHhcCCCCceEEEEEEECchhcCCCCCCeEEEccCCCCCCceEEEEEcC-cCCCcCC
Confidence 999999999987642 23567888999999999999999874321 11111111111 11123321 1122232
Q ss_pred CCCeEEEEEEec--CCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCC----CCCCCCCC
Q 013390 291 DSATVIQADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY----MMRGFTSF 364 (444)
Q Consensus 291 ~~~~~~~~~~~~--~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~----~p~~~~~~ 364 (444)
.+..++.+.+.. +..+..++++++++.++++|.+++|... .+....+++|+++.+.|.+|+... ++...++.
T Consensus 358 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~--~p~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~ 435 (470)
T 3i6d_A 358 EGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVMNING--EPEMTCVTRWHESMPQYHVGHKQRIKELREALASAY 435 (470)
T ss_dssp TTCEEEEEEECCSSCCGGGTSCHHHHHHHHHHHHGGGSCCCS--CCSEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEEECCCCCccccCCCHHHHHHHHHHHHHHHhCCCC--CceEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhC
Confidence 344555554432 2346678999999999999999998643 577888999999999999987521 22233457
Q ss_pred CCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHh
Q 013390 365 PNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 365 ~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~l 401 (444)
+|||+||||+. + .+|++|+.||+++|++|++.+
T Consensus 436 ~~l~~aG~~~~---g-~gv~~a~~sG~~aA~~i~~~l 468 (470)
T 3i6d_A 436 PGVYMTGASFE---G-VGIPDCIDQGKAAVSDALTYL 468 (470)
T ss_dssp TTEEECSTTTS---C-CSHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeecCC---C-CCHHHHHHHHHHHHHHHHHHh
Confidence 89999999875 2 469999999999999999876
No 4
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=99.96 E-value=1.4e-28 Score=248.47 Aligned_cols=370 Identities=12% Similarity=0.085 Sum_probs=249.9
Q ss_pred ccccCCChhHHHHHHHhCCCCCCCCc--ccceeccCCccccccccccCCC---CCCCccccccccCCCCChhhhhhhhh-
Q 013390 2 QGFWYPFRNIFSLVDELGIKPFTGWM--KSAQYSEEGLEVEFPIFQDLNQ---LPTPLGTLFYTQFSRLPLVDRLTSLP- 75 (444)
Q Consensus 2 h~~~~~~~~~~~Ll~elGl~~~~~~~--~~~~~~~~G~~~~~~~~~~~~~---~p~p~~~~~~~~~~~ls~~~kl~~~~- 75 (444)
|.+...++++.+|++++|++...... ...+...+|+... +|. +..|.+...+++.+.+++.+|+ .+.
T Consensus 60 ~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~g~~~~------~p~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~ 132 (475)
T 3lov_A 60 DSYVARKHILTDLIEAIGLGEKLVRNNTSQAFILDTGGLHP------IPKGAVMGIPTDLDLFRQTTLLTEEEKQ-EVAD 132 (475)
T ss_dssp CCEETTSTHHHHHHHHTTCGGGEEECCCCCEEEEETTEEEE------CCSSEETTEESCHHHHTTCSSSCHHHHH-HHHH
T ss_pred hhhhcccHHHHHHHHHcCCcceEeecCCCceEEEECCEEEE------CCCcccccCcCchHHHhhccCCChhHHH-HhhC
Confidence 67788899999999999998665433 1222224565321 111 1123333345677788988888 322
Q ss_pred hHHHHhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHH----------H
Q 013390 76 LMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII----------L 145 (444)
Q Consensus 76 l~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~----------~ 145 (444)
+.. .. ........+++|+.+|+++. +++++.+.++.|++.+.++.+++++|+.+.+..+..+. .
T Consensus 133 ~~~---~~--~~~~~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~l~~~~~ 206 (475)
T 3lov_A 133 LLL---HP--SDSLRIPEQDIPLGEYLRPR-LGDALVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGSLFEGMR 206 (475)
T ss_dssp HHH---SC--CTTCCCCSSCCBHHHHHHHH-HCHHHHHHTHHHHHHGGGCCCTTTSBSTTTCHHHHHHHHHHSSHHHHHH
T ss_pred ccc---CC--cccccCCCCCcCHHHHHHHH-hCHHHHHHHHHHHhceeecCChHHcCHHHHHHHHHHHHHhcCcHHHHHH
Confidence 111 11 11111136789999999985 78888999999999999999999999876665554321 0
Q ss_pred hcC--------------CCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCE
Q 013390 146 AHQ--------------KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGA 211 (444)
Q Consensus 146 ~~~--------------~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~ 211 (444)
... .+..+.+++||++. +++.|++.+.+ ++|++|++|++|..++ ++++ |++++++++||+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-l~~~l~~~l~~--~~i~~~~~V~~i~~~~--~~~~-v~~~~g~~~ad~ 280 (475)
T 3lov_A 207 LMRPLDQLPQTPQTTIKATGQFLSLETGLES-LIERLEEVLER--SEIRLETPLLAISRED--GRYR-LKTDHGPEYADY 280 (475)
T ss_dssp HTCC--------------CCSEEEETTCHHH-HHHHHHHHCSS--CEEESSCCCCEEEEET--TEEE-EECTTCCEEESE
T ss_pred HhcccccccccccccccCCCcEEeeCChHHH-HHHHHHhhccC--CEEEcCCeeeEEEEeC--CEEE-EEECCCeEECCE
Confidence 001 12345678899664 89999887654 7999999999999887 4565 676533899999
Q ss_pred EEEccChhhHHHhhhccCCCChHHHHHhhcCCCccEEEEEEEeccCCCCCCC-CceeeccCCCc--ccceeecccccccc
Q 013390 212 VVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNV-SNACSGFGDSL--AWTFFDLNKIYDEH 288 (444)
Q Consensus 212 VI~a~p~~~~~~ll~~~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~-~~~~~g~~~~~--~~~~~d~~~~~~~~ 288 (444)
||+|+|++++.+|++++++ +.+..+.+.++.++++.|+++++.+.. +..+....... ...+|+.+ ..+..
T Consensus 281 vV~a~p~~~~~~ll~~~~~------~~~~~~~~~~~~~v~l~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~-~~~~~ 353 (475)
T 3lov_A 281 VLLTIPHPQVVQLLPDAHL------PELEQLTTHSTATVTMIFDQQQSLPIEGTGFVVNRRAPYSITACTAIDQ-KWNHS 353 (475)
T ss_dssp EEECSCHHHHHHHCTTSCC------HHHHTCCEEEEEEEEEEEECCSSCSSSSSEEEECTTSSCSEEEEEEHHH-HCTTT
T ss_pred EEECCCHHHHHHHcCccCH------HHHhcCCCCeEEEEEEEECCcCCCCCCCEEEEecCCCCCceEEEEEEcc-cCCCC
Confidence 9999999999999876532 467888999999999999998732211 11121111111 11123321 11222
Q ss_pred CCCCCeEEEEEEe--cCCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCC----CCCCCC
Q 013390 289 KDDSATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY----MMRGFT 362 (444)
Q Consensus 289 ~~~~~~~~~~~~~--~~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~----~p~~~~ 362 (444)
. ++..++.+.+. .+..+..++++++++.++++|.+++|... .+....+++|+++.|.|.+|+... ++...+
T Consensus 354 ~-p~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~g~~~--~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~l~~ 430 (475)
T 3lov_A 354 A-PDHTVLRAFVGRPGNDHLVHESDEVLQQAVLQDLEKICGRTL--EPKQVIISRLMDGLPAYTVGHADRIQRVREEVLA 430 (475)
T ss_dssp C-TTEEEEEEEECBTTBCGGGGSCHHHHHHHHHHHHHHHHSSCC--CCSEEEEEEEEEEEECCCTTHHHHHHHHHHHHHH
T ss_pred C-CCcEEEEEEeCCCCCCcccCCCHHHHHHHHHHHHHHHhCCCC--CCeEEEEEEcccCCCCCCCChHHHHHHHHHHHHh
Confidence 2 22344444332 23456678999999999999999998643 577888999999999999997421 222334
Q ss_pred CCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCCC
Q 013390 363 SFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDG 404 (444)
Q Consensus 363 ~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~~ 404 (444)
+.+||||||+++.. .+|++|+.||+++|++|++.++..
T Consensus 431 ~~~~l~~aG~~~~g----~g~~~a~~sG~~aA~~i~~~l~~~ 468 (475)
T 3lov_A 431 QYPGIYLAGLAYDG----VGLPDCVASAKTMIESIELEQSHT 468 (475)
T ss_dssp HSTTEEECSTTTSC----SSHHHHHHHHHHHHHHHHHTC---
T ss_pred hCCCEEEEccCCCC----CCHHHHHHHHHHHHHHHHHHhhcc
Confidence 67899999998852 469999999999999999998753
No 5
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=99.96 E-value=4.2e-28 Score=245.19 Aligned_cols=364 Identities=15% Similarity=0.081 Sum_probs=243.4
Q ss_pred ccccCCChhHHHHHHHhCCCCCCCCc---c-cceeccCCccccccccccCCCCCCCccccccccCCCCChhhhhhhhhhH
Q 013390 2 QGFWYPFRNIFSLVDELGIKPFTGWM---K-SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLM 77 (444)
Q Consensus 2 h~~~~~~~~~~~Ll~elGl~~~~~~~---~-~~~~~~~G~~~~~~~~~~~~~~p~p~~~~~~~~~~~ls~~~kl~~~~l~ 77 (444)
|.|...++++.++++++|+.+...+. . ..++..+|+.+ ++ |.+...++....+++.++.+.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~g~~~---------~~--p~~~~~~~~~~~~~~~~~~~~~~~~ 138 (478)
T 2ivd_A 70 NSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLR---------SV--PASPPAFLASDILPLGARLRVAGEL 138 (478)
T ss_dssp CCEETTCHHHHHHHHHTTCGGGEECSCSSCCCEEEEETTEEE---------EC--CCSHHHHHTCSSSCHHHHHHHHGGG
T ss_pred hhhhhhhHHHHHHHHHcCCcceeeecCccccceEEEECCEEE---------EC--CCCHHHhccCCCCCHHHHHHHhhhh
Confidence 55667789999999999997543322 1 22223456521 12 2222234445567777777654311
Q ss_pred HHHhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHh-----------
Q 013390 78 AAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA----------- 146 (444)
Q Consensus 78 ~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~----------- 146 (444)
... . ....+++|+.+|+++. ++++..+.++.|++.+.++.+++++|+.+++..+..+...
T Consensus 139 ---~~~--~---~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (478)
T 2ivd_A 139 ---FSR--R---APEGVDESLAAFGRRH-LGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRA 209 (478)
T ss_dssp ---GCC--C---CCTTCCCBHHHHHHHH-TCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHH
T ss_pred ---hcC--C---CCCCCCCCHHHHHHHh-hCHHHHHHHHHHHhceeecCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHHh
Confidence 111 0 1136789999999986 7888899999999999999999999998776655432100
Q ss_pred ----------cCCC----cceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCeEEe
Q 013390 147 ----------HQKN----FDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKETYS 208 (444)
Q Consensus 147 ----------~~~~----~~~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~~~~ 208 (444)
...+ ....+++||+. .|++.|++.+ |++|++|++|++|..++ +++. |.+ +|++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~gG~~-~l~~~l~~~l---g~~i~~~~~V~~i~~~~--~~~~-v~~~~~~~g~~~~ 282 (478)
T 2ivd_A 210 QKAQRQAALPAGTAPKLSGALSTFDGGLQ-VLIDALAASL---GDAAHVGARVEGLARED--GGWR-LIIEEHGRRAELS 282 (478)
T ss_dssp HHHHTCC----CCSCCCCCCEEEETTCTH-HHHHHHHHHH---GGGEESSEEEEEEECC----CCE-EEEEETTEEEEEE
T ss_pred hhccccccCcccccccccccEEEECCCHH-HHHHHHHHHh---hhhEEcCCEEEEEEecC--CeEE-EEEeecCCCceEE
Confidence 0011 34567889965 5999998876 57999999999999877 3454 665 477899
Q ss_pred cCEEEEccChhhHHHhhhccCCCChHHHHHhhcCCCccEEEEEEEeccCCCCC-CCCceeecc--CCCcccceeeccccc
Q 013390 209 AGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVP-NVSNACSGF--GDSLAWTFFDLNKIY 285 (444)
Q Consensus 209 ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~-~~~~~~~g~--~~~~~~~~~d~~~~~ 285 (444)
||+||+|+|++.+.+|+++ + +....+.++++++.++.++++.+++++|.. ..+..+... +....+.+++.+. .
T Consensus 283 ad~vV~a~~~~~~~~ll~~--l-~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~ 358 (478)
T 2ivd_A 283 VAQVVLAAPAHATAKLLRP--L-DDALAALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTT-F 358 (478)
T ss_dssp CSEEEECSCHHHHHHHHTT--T-CHHHHHHHHTCCBCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHH-C
T ss_pred cCEEEECCCHHHHHHHhhc--c-CHHHHHHHhcCCCCcEEEEEEEEccccCCCCCceEEEecCCCCCceEEEEEEccc-C
Confidence 9999999999999998864 3 244456788899999999999999987632 222222111 1122233444322 1
Q ss_pred cccCCCCCeEEEEEEec--CCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCC----CCC
Q 013390 286 DEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY----MMR 359 (444)
Q Consensus 286 ~~~~~~~~~~~~~~~~~--~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~----~p~ 359 (444)
+...+++..++.+.+.. ...+...+++++.+.++++|++++|... .+....+++|+.+.+.+.+|+... ++.
T Consensus 359 ~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~ 436 (478)
T 2ivd_A 359 PFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALAREELKALAGVTA--RPSFTRVFRWPLGIPQYNLGHLERVAAIDAA 436 (478)
T ss_dssp GGGBSTTCEEEEEEEECTTCGGGGGSCHHHHHHHHHHHHHHHHCCCS--CCSEEEEEEESSCCBCCBTTHHHHHHHHHHH
T ss_pred CCcCCCCCEEEEEEeCCcCCccccCCCHHHHHHHHHHHHHHHhCCCC--CCcEEEEEECCCcccCCCcCHHHHHHHHHHH
Confidence 22222344555544332 2335567899999999999999998753 466777889999988888886421 111
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
..+ ++||||||+++. + .+|+||+.||+++|++|++.++.
T Consensus 437 ~~~-~~~l~~aG~~~~---g-~gv~gA~~SG~~aA~~i~~~l~~ 475 (478)
T 2ivd_A 437 LQR-LPGLHLIGNAYK---G-VGLNDCIRNAAQLADALVAGNTS 475 (478)
T ss_dssp HHT-STTEEECSTTTS---C-CSHHHHHHHHHHHHHHHCC----
T ss_pred Hhh-CCCEEEEccCCC---C-CCHHHHHHHHHHHHHHHHHhhcc
Confidence 122 689999999973 2 46999999999999999988764
No 6
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=99.96 E-value=5.1e-28 Score=242.92 Aligned_cols=294 Identities=13% Similarity=0.109 Sum_probs=208.2
Q ss_pred hhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChh-hchHHHHHHHHHHH-----HHhcCCCcceeeecCCcchhh
Q 013390 91 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAE-QCSAAATLGILYFI-----ILAHQKNFDLVWCRGTLREKI 164 (444)
Q Consensus 91 ~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Sa~~~~~~l~~~-----~~~~~~~~~~~~~~gg~~~~l 164 (444)
..++++|+.+|+++++.++. .+.++.+++.+.++.+++ ++|+..++.++... ++. ..+....++.||++ .+
T Consensus 141 ~~~~~~s~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~gG~~-~l 217 (453)
T 2yg5_A 141 RDLDTVSFKQWLINQSDDAE-ARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVD-EDFILDKRVIGGMQ-QV 217 (453)
T ss_dssp HHHHSSBHHHHHHHHCSCHH-HHHHHHHHHCCCCCCSCTTSSBHHHHHHHHHHTTCHHHHHC-HHHHTCEEETTCTH-HH
T ss_pred hhhhhccHHHHHHhhcCCHH-HHHHHHHHHHhhcccCCcccccHHHHHHHhccCCcHhhhcc-CCCcceEEEcCChH-HH
Confidence 34688999999999877776 567889988888899999 99998887665431 000 00112356789965 59
Q ss_pred HHHHHHHHHhcCcEEEcCceeeEEEecCCCCe-EEEEEeCCeEEecCEEEEccChhhHHHhhhccCCCChHHHHHhhcCC
Q 013390 165 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC-ISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLA 243 (444)
Q Consensus 165 ~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~-v~~v~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~l~~l~ 243 (444)
++.|++.+ |++|++|++|++|..++ ++ |+ |.++|++++||+||+|+|++++.+|+..+.++ ....+.++++.
T Consensus 218 ~~~l~~~l---g~~i~~~~~V~~i~~~~--~~~v~-v~~~~~~~~ad~VI~a~p~~~~~~l~~~p~lp-~~~~~~i~~~~ 290 (453)
T 2yg5_A 218 SIRMAEAL---GDDVFLNAPVRTVKWNE--SGATV-LADGDIRVEASRVILAVPPNLYSRISYDPPLP-RRQHQMHQHQS 290 (453)
T ss_dssp HHHHHHHH---GGGEECSCCEEEEEEET--TEEEE-EETTTEEEEEEEEEECSCGGGGGGSEEESCCC-HHHHHHGGGEE
T ss_pred HHHHHHhc---CCcEEcCCceEEEEEeC--CceEE-EEECCeEEEcCEEEEcCCHHHHhcCEeCCCCC-HHHHHHHhcCC
Confidence 99998755 68999999999999887 55 65 67788899999999999999998887665553 33446678888
Q ss_pred CccEEEEEEEeccCCCCCCCCce-eeccCCCcccceeeccccccccCCCCCeEEEEEEec--CCCCCCCCHHHHHHHHHH
Q 013390 244 SIDVVSVKLWFDKKVTVPNVSNA-CSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVS 320 (444)
Q Consensus 244 ~~~~~~v~l~~d~~~~~~~~~~~-~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ee~~~~~l~ 320 (444)
+.++.++++.|++++|....... ....+....+ ++|.+. + +.+..++...+.. ++.|..++++++++.+++
T Consensus 291 ~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~-~~~~~~--~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 364 (453)
T 2yg5_A 291 LGLVIKVHAVYETPFWREDGLSGTGFGASEVVQE-VYDNTN--H---EDDRGTLVAFVSDEKADAMFELSAEERKATILA 364 (453)
T ss_dssp ECCEEEEEEEESSCGGGGGTEEEEEECTTSSSCE-EEECCC--T---TCSSEEEEEEEEHHHHHHHHHSCHHHHHHHHHH
T ss_pred CcceEEEEEEECCCCCCCCCCCceeecCCCCeEE-EEeCCC--C---CCCCCEEEEEeccHHHHHHhcCCHHHHHHHHHH
Confidence 88899999999999874332111 1111122222 455331 1 1123444333322 234666789999999999
Q ss_pred HHHhhccCCCCCeeeeEEEEEeCCCc-------cccCCCCCC-CCCCCCCCCCCEEEeecccccCCCcchhhHHHHHHHH
Q 013390 321 YLSKCIKDFSTATVMDHKIRRFPKSL-------THFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLE 392 (444)
Q Consensus 321 ~l~~~~p~~~~~~~~~~~v~r~~~~~-------~~~~pg~~~-~~p~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~ 392 (444)
+|++++|... ..++...+++|.... +.+.||... .++..++|++||||||+++++.|+ ++|+||+.||++
T Consensus 365 ~L~~~~~~~~-~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~~~~p~~~l~~aG~~~~~~~~-g~v~gA~~SG~~ 442 (453)
T 2yg5_A 365 SLARYLGPKA-EEPVVYYESDWGSEEWTRGCYAASFDLGGLHRYGADSRTPVGPIHFSCSDIAAEGY-QHVDGAVRMGQR 442 (453)
T ss_dssp HHHHHHCGGG-GCCSEEEECCTTTCTTTCSSSCEEECTTHHHHHGGGTTCCBTTEEECCGGGCSTTT-TSHHHHHHHHHH
T ss_pred HHHHHhCccC-CCccEEEEeecCCCCCCCCCCcCcCCCCccccchHHHhCCcCceEEeecccccccc-cchHHHHHHHHH
Confidence 9999997522 246677778886432 234566431 234566789999999999987788 799999999999
Q ss_pred HHHHHHHHhC
Q 013390 393 AANRVVDYLG 402 (444)
Q Consensus 393 aA~~il~~lg 402 (444)
||++|++.++
T Consensus 443 aA~~i~~~l~ 452 (453)
T 2yg5_A 443 TAADIIARSK 452 (453)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhc
Confidence 9999998775
No 7
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=99.96 E-value=6.4e-26 Score=225.48 Aligned_cols=341 Identities=12% Similarity=0.057 Sum_probs=222.5
Q ss_pred CChhHHHHHHHhCCCCCCCCc-c-cceeccCCccccccccccCCCCCCCccccccccCCCCChhhhhhhhhhHHHHhhcC
Q 013390 7 PFRNIFSLVDELGIKPFTGWM-K-SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFD 84 (444)
Q Consensus 7 ~~~~~~~Ll~elGl~~~~~~~-~-~~~~~~~G~~~~~~~~~~~~~~p~p~~~~~~~~~~~ls~~~kl~~~~l~~~~~~~~ 84 (444)
.+..+.+|++++|+....... . ..++ .+|+.+. ++..+ ..+++.++.++...+......
T Consensus 61 ~~~~~~~l~~~lg~~~~~~~~~~~~~~~-~~g~~~~---------~~~~~--------~~l~~~~~~~~~~~~~~~~~~- 121 (421)
T 3nrn_A 61 EDGPLAHLLRILGAKVEIVNSNPKGKIL-WEGKIFH---------YRESW--------KFLSVKEKAKALKLLAEIRMN- 121 (421)
T ss_dssp TSSHHHHHHHHHTCCCCEEECSSSCEEE-ETTEEEE---------GGGGG--------GGCC--------CCHHHHHTT-
T ss_pred CChHHHHHHHHhCCcceEEECCCCeEEE-ECCEEEE---------cCCch--------hhCCHhHHHHHHHHHHHHHhc-
Confidence 467899999999997543222 1 2222 3565321 11111 235667777665543322110
Q ss_pred CChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCCCcceeeecCCcchhh
Q 013390 85 NTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKI 164 (444)
Q Consensus 85 ~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l 164 (444)
....+++|+.+|+++++++++.++.++.+++...++.+++++|+..++..+.... .. + ...+++||+. .+
T Consensus 122 -----~~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~--g~~~~~gG~~-~l 191 (421)
T 3nrn_A 122 -----KLPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEIRAAL-RW-G--GPGLIRGGCK-AV 191 (421)
T ss_dssp -----CCCCCCSBHHHHHHHHTCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHH-HH-C--SCEEETTCHH-HH
T ss_pred -----cCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHHh-hc-C--CcceecCCHH-HH
Confidence 1123568999999998667677888999999999999999999998888877653 21 1 2367899955 59
Q ss_pred HHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhccCCCChHHHHHhhcCCC
Q 013390 165 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLAS 244 (444)
Q Consensus 165 ~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~l~~l~~ 244 (444)
++.|++.+++.|++|++|++|++|..++ +++ |.++|++++||+||+|+|++.+.+|++...++ ....+.+.++.+
T Consensus 192 ~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~v--V~~~g~~~~ad~Vv~a~~~~~~~~ll~~~~~~-~~~~~~~~~~~~ 266 (421)
T 3nrn_A 192 IDELERIIMENKGKILTRKEVVEINIEE--KKV--YTRDNEEYSFDVAISNVGVRETVKLIGRDYFD-RDYLKQVDSIEP 266 (421)
T ss_dssp HHHHHHHHHTTTCEEESSCCEEEEETTT--TEE--EETTCCEEECSEEEECSCHHHHHHHHCGGGSC-HHHHHHHHTCCC
T ss_pred HHHHHHHHHHCCCEEEcCCeEEEEEEEC--CEE--EEeCCcEEEeCEEEECCCHHHHHHhcCcccCC-HHHHHHHhCCCC
Confidence 9999999999999999999999999876 556 66778899999999999999999998743332 344567888998
Q ss_pred ccEEEEEEEeccCCCCCCCCceeeccCCCcccceeeccccccccCCCCCeEEEEEEecCCCCCCCCHHHHHHHHHHHHHh
Q 013390 245 IDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSK 324 (444)
Q Consensus 245 ~~~~~v~l~~d~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~l~~l~~ 324 (444)
.+++++++.++++.. . .++.+++.+... ..+...+...+..++++.+++.+..+.. ..+.++..+.++++|++
T Consensus 267 ~~~~~v~l~~~~~~~-~-~~~~~~~~~~~~-~~i~~~s~~~p~~ap~G~~~~~~~~~~~----~~~~~~~~~~~~~~L~~ 339 (421)
T 3nrn_A 267 SEGIKFNLAVPGEPR-I-GNTIVFTPGLMI-NGFNEPSALDKSLAREGYTLIMAHMALK----NGNVKKAIEKGWEELLE 339 (421)
T ss_dssp CCEEEEEEEEESSCS-S-CSSEEECTTSSS-CEEECGGGTCGGGSCTTEEEEEEEEECT----TCCHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEcCCcc-c-CCeEEEcCCcce-eeEeccCCCCCCcCCCCceEEEEEEeec----cccHHHHHHHHHHHHHH
Confidence 889999999998853 2 233444433221 1122234444445544556655543322 23445668999999999
Q ss_pred hccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHH
Q 013390 325 CIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRV 397 (444)
Q Consensus 325 ~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~i 397 (444)
++| . .+++ .+.+|+.+.|.+.+......+ .++ +|||+||||+.+.++ .+||||+.||++||++|
T Consensus 340 ~~p--~-~~~~--~~~~~~~~~p~~~~~~~~~~~--~~~-~gl~laGd~~~~~~g-~~~~ga~~sg~~aA~~l 403 (421)
T 3nrn_A 340 IFP--E-GEPL--LAQVYRDGNPVNRTRAGLHIE--WPL-NEVLVVGDGYRPPGG-IEVDGIALGVMKALEKL 403 (421)
T ss_dssp HCT--T-CEEE--EEEEC-------------CCC--CCC-SSEEECSTTCCCTTC-CHHHHHHHHHHHHHHHT
T ss_pred HcC--C-CeEE--EeeeccCCCCcccccCCCCCC--CCC-CcEEEECCcccCCCc-eeeehHHHHHHHHHHHh
Confidence 999 2 2444 456788887777432211222 577 999999999986444 47799999999999999
No 8
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=242.15 Aligned_cols=295 Identities=12% Similarity=0.053 Sum_probs=215.3
Q ss_pred ccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHH----------hc---------------
Q 013390 93 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL----------AH--------------- 147 (444)
Q Consensus 93 ~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~----------~~--------------- 147 (444)
.+++|+.+|+++. +++++.+.+++|++.++++.+++++|+..+++.+..... ..
T Consensus 141 ~~~~s~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~l~~~e~~~gsl~~~~~~~~~~~~~~~~~~~~~~ 219 (477)
T 3nks_A 141 EPDETVHSFAQRR-LGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQA 219 (477)
T ss_dssp SSCCBHHHHHHHH-HCHHHHHHTHHHHHHHHHSSCTTTBBHHHHCHHHHHHHHHHSCHHHHHHHC-----CCCCHHHHHH
T ss_pred CCCcCHHHHHHHh-hCHHHHHHHHHHHhcccccCCHHHhhHHHHHHHHHHHHHHcCCHHHHHHHhcccccCCchhhhhhh
Confidence 5789999999985 788889999999999999999999999998776554210 00
Q ss_pred -CCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhh
Q 013390 148 -QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIK 226 (444)
Q Consensus 148 -~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ll~ 226 (444)
.....+.+++||++ .+++.|++.+++.|++|++|++|++|..++ ++++.|.++++++.||+||+|+|++.+.+|++
T Consensus 220 ~~~~~~~~~~~gG~~-~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~--~~~~~v~~~~~~~~ad~vv~a~p~~~~~~ll~ 296 (477)
T 3nks_A 220 LAERWSQWSLRGGLE-MLPQALETHLTSRGVSVLRGQPVCGLSLQA--EGRWKVSLRDSSLEADHVISAIPASVLSELLP 296 (477)
T ss_dssp HHTTCSEEEETTCTT-HHHHHHHHHHHHTTCEEECSCCCCEEEECG--GGCEEEECSSCEEEESEEEECSCHHHHHHHSC
T ss_pred cccCccEEEECCCHH-HHHHHHHHHHHhcCCEEEeCCEEEEEEEcC--CceEEEEECCeEEEcCEEEECCCHHHHHHhcc
Confidence 01223567889976 499999999999999999999999999877 33335777777899999999999999999987
Q ss_pred ccCCCChHHHHHhhcCCCccEEEEEEEeccCCCCCCCCceeeccC--CCcccceeeccccccccCCCCCeEEEEEEecC-
Q 013390 227 NSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG--DSLAWTFFDLNKIYDEHKDDSATVIQADFYHA- 303 (444)
Q Consensus 227 ~~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~- 303 (444)
+.. ++..+.+.++.+.++.++++.|+++++....+..+.... ......+||.+..+....+++..++.+++.+.
T Consensus 297 ~~~---~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~ 373 (477)
T 3nks_A 297 AEA---APLARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSW 373 (477)
T ss_dssp GGG---HHHHHHHHTCCEEEEEEEEEEETTCCCSSCSSEEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHH
T ss_pred ccC---HHHHHHHhcCCCCcEEEEEEEECCCCCCCCCceEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEECCcc
Confidence 642 444577888999999999999999887433332222111 11112246544332211123456665543211
Q ss_pred -----CCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCC----CCCCCCCEEEeeccc
Q 013390 304 -----NELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR----GFTSFPNLFMAGDWI 374 (444)
Q Consensus 304 -----~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~----~~~~~~~l~laGd~~ 374 (444)
.....++++++++.++++|.++++... .+....+++|+++.|.|.+|+...... .....++|++||||+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~--~~~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~G~~~ 451 (477)
T 3nks_A 374 LQTLEASGCVLSQELFQQRAQEAAATQLGLKE--MPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASY 451 (477)
T ss_dssp HHHHHHSSCCCCHHHHHHHHHHHHHHHHCCCS--CCSEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTCSEEECSTTT
T ss_pred ccccccccCCCCHHHHHHHHHHHHHHHhCCCC--CCcEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhcCCCEEEEccCC
Confidence 111246899999999999999997533 577888999999999999997532111 111236899999997
Q ss_pred ccCCCcchhhHHHHHHHHHHHHHHHH
Q 013390 375 TTRHGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 375 ~~~~~~~~~egAv~SG~~aA~~il~~ 400 (444)
. | .+|++|+.||+++|++|+..
T Consensus 452 ~-G---~gv~~a~~sg~~aA~~il~~ 473 (477)
T 3nks_A 452 E-G---VAVNDCIESGRQAAVSVLGT 473 (477)
T ss_dssp S-C---CSHHHHHHHHHHHHHHHHHC
T ss_pred C-C---CcHHHHHHHHHHHHHHHHhc
Confidence 5 2 47999999999999999874
No 9
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=99.95 E-value=2.1e-27 Score=241.73 Aligned_cols=370 Identities=14% Similarity=0.115 Sum_probs=240.9
Q ss_pred ccccCCChhHHHHHHHhCCCCCCCCcc---cceeccCCccccccccccCCCCCCCccccccccCCCCChhhhhhhhhhHH
Q 013390 2 QGFWYPFRNIFSLVDELGIKPFTGWMK---SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA 78 (444)
Q Consensus 2 h~~~~~~~~~~~Ll~elGl~~~~~~~~---~~~~~~~G~~~~~~~~~~~~~~p~p~~~~~~~~~~~ls~~~kl~~~~l~~ 78 (444)
|.|...++++.+|++++|+.+...+.. ..++..+|+.+ ++ |.+...+++...+++.+|++.+..
T Consensus 67 ~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~g~~~---------~~--p~~~~~~~~~~~~~~~~~~~~~~~-- 133 (504)
T 1sez_A 67 NTMTESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPV---------LL--PSNPIDLIKSNFLSTGSKLQMLLE-- 133 (504)
T ss_dssp CCBCCCSHHHHHHHHHTTCGGGEECCSSCCCEEEESSSSEE---------EC--CSSHHHHHHSSSSCHHHHHHHHTH--
T ss_pred cccccCcHHHHHHHHHcCCcccceeccCCCceEEEECCeEE---------EC--CCCHHHHhccccCCHHHHHHHhHh--
Confidence 567778899999999999986544431 12223566522 12 333333445566788888875431
Q ss_pred HHhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHH--------------
Q 013390 79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII-------------- 144 (444)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~-------------- 144 (444)
.+........ ....+++|+.+|++++ ++++.++.++.|++.++++.+++++|+.+++..+....
T Consensus 134 ~~~~~~~~~~-~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~ 211 (504)
T 1sez_A 134 PILWKNKKLS-QVSDSHESVSGFFQRH-FGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSK 211 (504)
T ss_dssp HHHC-----------CCCBHHHHHHHH-HCHHHHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHT
T ss_pred hhccCccccc-ccCCCCccHHHHHHHH-cCHHHHHHHHHHHHccccCCChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhh
Confidence 1111000000 0124679999999986 78888999999999999999999999987655443321
Q ss_pred HhcC---------------CCcceeeecCCcchhhHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCe-----EEEEEe-
Q 013390 145 LAHQ---------------KNFDLVWCRGTLREKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCC-----ISDVVC- 202 (444)
Q Consensus 145 ~~~~---------------~~~~~~~~~gg~~~~l~~~l~~~l~~~G-~~v~~~~~V~~I~~~~~~g~-----v~~v~~- 202 (444)
+... ......+++||++ .|+++|++.+ + ++|++|++|++|..+++ +. +. |++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~-~l~~~l~~~l---~~~~i~~~~~V~~I~~~~~-~~~~~~~~~-v~~~ 285 (504)
T 1sez_A 212 LSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQ-TLTDAICKDL---REDELRLNSRVLELSCSCT-EDSAIDSWS-IISA 285 (504)
T ss_dssp TC----------CCCSCCSTTCSCBEETTCTH-HHHHHHHTTS---CTTTEETTCCEEEEEEECS-SSSSSCEEE-EEEB
T ss_pred hcccccccccccchhhccccCCceEeeCcHHH-HHHHHHHhhc---ccceEEcCCeEEEEEecCC-CCcccceEE-EEEc
Confidence 0000 0112456789965 4999888644 4 78999999999998874 31 33 444
Q ss_pred --CC---eEEecCEEEEccChhhHHHhhhc---cCCCChHHHHHhhcCCCccEEEEEEEeccCCCCCC--CCceeeccCC
Q 013390 203 --GK---ETYSAGAVVLAVGISTLQELIKN---SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN--VSNACSGFGD 272 (444)
Q Consensus 203 --~g---~~~~ad~VI~a~p~~~~~~ll~~---~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~--~~~~~~g~~~ 272 (444)
+| ++++||+||+|+|++.+.+++.. .+++ ++ .+..+++.++.++++.|++++|... .+..+.....
T Consensus 286 ~~~g~~~~~~~ad~VI~a~p~~~l~~ll~~~~~~~~~-~~---~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~ 361 (504)
T 1sez_A 286 SPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFL-LN---FIPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKE 361 (504)
T ss_dssp CSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCC-CT---TSCCCCEEEEEEEEEEEEGGGBSSCCCSSEEECCGGG
T ss_pred CCCCccceeEECCEEEECCCHHHHHHHhhcccCCccc-HH---HHhcCCCCceEEEEEEEchhhcCCCCCceEEEcCCCC
Confidence 24 57899999999999999998842 1221 11 2667788889999999999876321 1111111110
Q ss_pred -----CcccceeeccccccccCCCCCeEEEEEEec--CCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCC
Q 013390 273 -----SLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS 345 (444)
Q Consensus 273 -----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~ 345 (444)
.....+++ +...+...+++..++.+...+ ...+..++++++++.++++|++++|... .+....+.+|+++
T Consensus 362 ~~~g~~~~~~~~~-s~~~~~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~g~~~--~p~~~~~~~w~~~ 438 (504)
T 1sez_A 362 QQHGLKTLGTLFS-SMMFPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQLLGAEG--EPTYVNHLYWSKA 438 (504)
T ss_dssp GGGTCCSSEEEEH-HHHCGGGSCTTEEEEEEEEESTTCGGGTTCCHHHHHHHHHHHHHHHHCBCS--CCSSEEEEEEEEE
T ss_pred CCCCCccceEEee-ccccCCcCCCCCEEEEEEeCCCCcccccCCCHHHHHHHHHHHHHHHhCCCC--CCeEEEEeECCCC
Confidence 11111232 222233332333444332222 2356678999999999999999998743 4677888899999
Q ss_pred ccccCCCCCCCCC---CCCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 346 LTHFFPGSYKYMM---RGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 346 ~~~~~pg~~~~~p---~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
.|.|.+|+....+ ...++++||||||++++ + .+|++|+.||++||++|++.++.
T Consensus 439 ~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~---g-~~v~gai~sG~~aA~~il~~l~~ 495 (504)
T 1sez_A 439 FPLYGHNYDSVLDAIDKMEKNLPGLFYAGNHRG---G-LSVGKALSSGCNAADLVISYLES 495 (504)
T ss_dssp EECCCTTHHHHHHHHHHHHHHSTTEEECCSSSS---C-SSHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCccCcCHHHHHHHHHHHHHhCCCEEEEeecCC---C-CCHHHHHHHHHHHHHHHHHHHhh
Confidence 8999888643211 12246789999999986 2 57999999999999999999875
No 10
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=99.95 E-value=2e-26 Score=233.97 Aligned_cols=292 Identities=14% Similarity=0.068 Sum_probs=209.2
Q ss_pred hhccCccHHHHHHHhC--CCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhc----CCCcceeeecCCcchhh
Q 013390 91 RKYDSITARELFKQFG--CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAH----QKNFDLVWCRGTLREKI 164 (444)
Q Consensus 91 ~~~d~~s~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~----~~~~~~~~~~gg~~~~l 164 (444)
..++++|+.+|+++.+ .++. .+.++.+++...++.+++++|+..++..+.... .. ........+.||+. .+
T Consensus 181 ~~~~~~s~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gG~~-~l 257 (495)
T 2vvm_A 181 RKYDEMSYSERIDQIRDELSLN-ERSSLEAFILLCSGGTLENSSFGEFLHWWAMSG-YTYQGCMDCLMSYKFKDGQS-AF 257 (495)
T ss_dssp HHHHTSBHHHHHHHHGGGCCHH-HHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTT-SSHHHHHHHHHSEEETTCHH-HH
T ss_pred hhhhhhhHHHHHHHhhccCCHH-HHHHHHHHHHHhcCCCcchhhHHHHHHHHHHcC-CCHHHHHhhhceEEeCCCHH-HH
Confidence 4578999999999987 7777 467999999999999999999988877654310 00 00112345789965 59
Q ss_pred HHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhHHHhhhccCCCChHHHHHhhcC
Q 013390 165 FEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL 242 (444)
Q Consensus 165 ~~~l~~~l~~~G-~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~l~~l 242 (444)
++.|++.+++.| ++|++|++|++|..++ ++|+ |.+. |++++||+||+|+|++++.++...+.++ ....+.++.+
T Consensus 258 ~~~l~~~l~~~g~~~i~~~~~V~~i~~~~--~~v~-v~~~~g~~~~ad~vI~a~~~~~l~~i~~~p~lp-~~~~~ai~~~ 333 (495)
T 2vvm_A 258 ARRFWEEAAGTGRLGYVFGCPVRSVVNER--DAAR-VTARDGREFVAKRVVCTIPLNVLSTIQFSPALS-TERISAMQAG 333 (495)
T ss_dssp HHHHHHHHHTTTCEEEESSCCEEEEEECS--SSEE-EEETTCCEEEEEEEEECCCGGGGGGSEEESCCC-HHHHHHHHHC
T ss_pred HHHHHHHhhhcCceEEEeCCEEEEEEEcC--CEEE-EEECCCCEEEcCEEEECCCHHHHhheeeCCCCC-HHHHHHHHhc
Confidence 999999999888 9999999999999876 4465 6665 6689999999999999999887655553 3445678888
Q ss_pred CCccEEEEEEEeccCCCCCCCCceeeccCCCcccceeeccccccccCCCCCeEEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 013390 243 ASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYL 322 (444)
Q Consensus 243 ~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~l~~l 322 (444)
.+.++.++++.|++++| . .+..+...+....+ +++... .+.+..++.+ +.+... .+++++..+.++++|
T Consensus 334 ~~~~~~kv~l~~~~~~~-~-~~~g~~~~~~~~~~-~~~~~~-----~~~~~~vl~~-~~~~~~--~~~~~e~~~~~~~~L 402 (495)
T 2vvm_A 334 HVSMCTKVHAEVDNKDM-R-SWTGIAYPFNKLCY-AIGDGT-----TPAGNTHLVC-FGNSAN--HIQPDEDVRETLKAV 402 (495)
T ss_dssp CCCCCEEEEEEESCGGG-G-GEEEEECSSCSSCE-EEEEEE-----CTTSCEEEEE-EECSTT--CCCTTTCHHHHHHHH
T ss_pred CCCceeEEEEEECCccC-C-CceeEecCCCCcEE-EecCCC-----CCCCCeEEEE-EeCccc--cCCCHHHHHHHHHHH
Confidence 99999999999999876 2 32222211222333 343221 1123344444 333222 145566778899999
Q ss_pred HhhccCCCCCeeeeEEEEEeCCC------ccccCCCCCC-CCCCCCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHH
Q 013390 323 SKCIKDFSTATVMDHKIRRFPKS------LTHFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAAN 395 (444)
Q Consensus 323 ~~~~p~~~~~~~~~~~v~r~~~~------~~~~~pg~~~-~~p~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~ 395 (444)
++++|+.. .+....+++|... .+.+.||... .++...+|.++|||||+++++.|+ ++||||+.||++||+
T Consensus 403 ~~~~~~~~--~~~~~~~~~W~~dp~~~g~y~~~~~g~~~~~~~~l~~p~~~l~fAGe~t~~~~~-g~veGAi~SG~raA~ 479 (495)
T 2vvm_A 403 GQLAPGTF--GVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHGGVVFANSDWALGWR-SFIDGAIEEGTRAAR 479 (495)
T ss_dssp HTTSTTSC--CEEEEEECCTTTCTTTSSSSCCCCTTHHHHHHHHHHCCBTTEEECCGGGCSSST-TSHHHHHHHHHHHHH
T ss_pred HHhcCCCC--CceEEEEeEcCCCCCCCCCccCcCCCcchhhHHHHhCcCCCEEEechhhhcCCc-eEEEhHHHHHHHHHH
Confidence 99998743 5777778889542 2334456431 233344678999999999987788 899999999999999
Q ss_pred HHHHHhCC
Q 013390 396 RVVDYLGD 403 (444)
Q Consensus 396 ~il~~lg~ 403 (444)
+|++.++.
T Consensus 480 ~i~~~l~~ 487 (495)
T 2vvm_A 480 VVLEELGT 487 (495)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhcc
Confidence 99999973
No 11
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=99.90 E-value=5.8e-23 Score=209.27 Aligned_cols=365 Identities=13% Similarity=0.097 Sum_probs=229.9
Q ss_pred ccccCCChhHHHHHHHhCCCCCCCCc--ccceeccCCccccccccccCCCCCCCccccccccCCCCChhhhhhhhh-hHH
Q 013390 2 QGFWYPFRNIFSLVDELGIKPFTGWM--KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLP-LMA 78 (444)
Q Consensus 2 h~~~~~~~~~~~Ll~elGl~~~~~~~--~~~~~~~~G~~~~~~~~~~~~~~p~p~~~~~~~~~~~ls~~~kl~~~~-l~~ 78 (444)
|.|+..++++++|++++|........ +......+|+.+ +.|+... ...++..+..+... ++.
T Consensus 66 h~~~~~~~~v~~l~~e~~~~~~~~~~~~~~~~i~~~g~~~-----------~~p~~~~----~~~~~~~~~~~~~~~~~~ 130 (513)
T 4gde_A 66 HVIFSHYKYFDDCLDEALPKEDDWYTHQRISYVRCQGQWV-----------PYPFQNN----ISMLPKEEQVKCIDGMID 130 (513)
T ss_dssp CCCCCCBHHHHHHHHHHSCSGGGEEEEECCEEEEETTEEE-----------ESSGGGG----GGGSCHHHHHHHHHHHHH
T ss_pred eEecCCCHHHHHHHHHhCCccceeEEecCceEEEECCeEe-----------ecchhhh----hhhcchhhHHHHHHHHHH
Confidence 88999999999999999876432222 222222466522 1133211 11234444444221 111
Q ss_pred HHhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHH---------HHHHHHhcCC
Q 013390 79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGI---------LYFIILAHQK 149 (444)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~---------l~~~~~~~~~ 149 (444)
.... ......+..|+.+|+.+. +++++.+.++.|++.++++.+++++|+.++... +...+.....
T Consensus 131 ~~~~-----~~~~~~~~~s~~~~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (513)
T 4gde_A 131 AALE-----ARVANTKPKTFDEWIVRM-MGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTA 204 (513)
T ss_dssp HHHH-----HHTCCSCCCSHHHHHHHH-HHHHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHTCCC
T ss_pred HHHh-----hhcccccccCHHHHHHHh-hhhhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhhhhhhcccc
Confidence 1111 111235678999999986 788999999999999999999999997654321 1111111111
Q ss_pred -----Ccceee-ecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHH
Q 013390 150 -----NFDLVW-CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 223 (444)
Q Consensus 150 -----~~~~~~-~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ 223 (444)
.....+ ++||++ .++++|++.+++.|++|++|++|++|..++ +++ +..+|+++.||+||+|+|++.+.+
T Consensus 205 ~~~~~~~~~~~~~~gG~~-~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~--~~v--~~~~G~~~~ad~vI~t~P~~~l~~ 279 (513)
T 4gde_A 205 GNWGPNATFRFPARGGTG-GIWIAVANTLPKEKTRFGEKGKVTKVNANN--KTV--TLQDGTTIGYKKLVSTMAVDFLAE 279 (513)
T ss_dssp CSCBTTBEEEEESSSHHH-HHHHHHHHTSCGGGEEESGGGCEEEEETTT--TEE--EETTSCEEEEEEEEECSCHHHHHH
T ss_pred cccccccceeecccCCHH-HHHHHHHHHHHhcCeeeecceEEEEEEccC--CEE--EEcCCCEEECCEEEECCCHHHHHH
Confidence 112233 478965 599999999999999999999999999876 543 345688999999999999999999
Q ss_pred hhhccCCCChHHHHHhhcCCCccEEEEEEEeccCCCCCC-CCceeeccCCCccc-ceeecccccccc-------------
Q 013390 224 LIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN-VSNACSGFGDSLAW-TFFDLNKIYDEH------------- 288 (444)
Q Consensus 224 ll~~~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~-~~~~~~g~~~~~~~-~~~d~~~~~~~~------------- 288 (444)
++.+. +.......+.|.++.+|.+.++....... +...++-.+..... -+...++..+..
T Consensus 280 ~l~~~-----~~~~~~~~l~y~~~~~v~l~~~~~~~~~~~~~~~~y~~~~~~~f~Ri~~~~n~sp~~~p~~~~~~~~~~~ 354 (513)
T 4gde_A 280 AMNDQ-----ELVGLTKQLFYSSTHVIGVGVRGSRPERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPEASAALPTMQL 354 (513)
T ss_dssp HTTCH-----HHHHHHTTCCEEEEEEEEEEEESSCCTTTTTCCEEECCSTTCSCSEEECGGGTCGGGSCCTTCCEECCEE
T ss_pred hcCch-----hhHhhhhcccCCceEEEEEEEeccccccccccceeeccCCCCceeEEEecCCCCcccCCCCCceEEEEEe
Confidence 88753 22345678899888888888876533111 11101101111000 000001110100
Q ss_pred --------CCC-CCeEEEEEE-ecCCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCC--
Q 013390 289 --------KDD-SATVIQADF-YHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY-- 356 (444)
Q Consensus 289 --------~~~-~~~~~~~~~-~~~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~-- 356 (444)
.+. ...+..... ...+.+..++++++++.++++|.++.+......++...+.|||++.|.|..|+...
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~~ayP~y~~~~~~~~~ 434 (513)
T 4gde_A 355 ADGSRPQSTEAKEGPYWSIMLEVSESSMKPVNQETILADCIQGLVNTEMLKPTDEIVSTYHRRFDHGYPTPTLEREGTLT 434 (513)
T ss_dssp TTSCCCSCCSEECCCEEEEEEEEEEBTTBCCCTTTHHHHHHHHHHHTTSSCTTCEEEEEEEEEEEEEEECCBTTHHHHHH
T ss_pred ccCCCcccccCCcceEEEEEecccchhccCCCHHHHHHHHHHHHHHhcCCCCccceEEEEEEECCCeecccCHhHHHHHH
Confidence 000 111111111 12345667899999999999999998765555789999999999999999887532
Q ss_pred --CCCCCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 357 --MMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 357 --~p~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
++.+.. +|||++|-.-.-.|..+.|++|+.+|+.||+.|+.
T Consensus 435 ~~~~~l~~--~~l~~~GR~g~~~Y~~~n~D~a~~~g~~aa~~I~~ 477 (513)
T 4gde_A 435 QILPKLQD--KDIWSRGRFGSWRYEVGNQDHSFMLGVEAVDNIVN 477 (513)
T ss_dssp HHHHHHHH--TTEEECSTTTTCCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh--cCcEEecCCcccCcCCCCHHHHHHHHHHHHHHHHc
Confidence 222222 69999995432123214799999999999999996
No 12
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=99.90 E-value=2.7e-23 Score=209.70 Aligned_cols=361 Identities=12% Similarity=0.046 Sum_probs=229.1
Q ss_pred ccccCCChhHHHHHHHhCCCCCCCCcccceeccCCccccccccccCCCCCCCccccccccCCCCChhhhhhhhh-hHHHH
Q 013390 2 QGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLP-LMAAV 80 (444)
Q Consensus 2 h~~~~~~~~~~~Ll~elGl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~p~p~~~~~~~~~~~ls~~~kl~~~~-l~~~~ 80 (444)
|.|+..++.+.+|+++++ +.............+|+.+ ++ |++.. ...++..++.+.+. ++...
T Consensus 65 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~---------~~--P~~~~----~~~l~~~~~~~~~~~ll~~~ 128 (484)
T 4dsg_A 65 HVIFSHYQYFDDVMDWAV-QGWNVLQRESWVWVRGRWV---------PY--PFQNN----IHRLPEQDRKRCLDELVRSH 128 (484)
T ss_dssp CCBCCSBHHHHHHHHHHC-SCEEEEECCCEEEETTEEE---------ES--SGGGC----GGGSCHHHHHHHHHHHHHHH
T ss_pred cccccChHHHHHHHHHHh-hhhhhccCceEEEECCEEE---------Ee--Cccch----hhhCCHHHHHHHHHHHHHHH
Confidence 678889999999999986 3221111222223467522 12 32211 12356666665443 22211
Q ss_pred hhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHH---------HHHHHHHHhcC---
Q 013390 81 IDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATL---------GILYFIILAHQ--- 148 (444)
Q Consensus 81 ~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~---------~~l~~~~~~~~--- 148 (444)
.+ ....+++|+++|+.++ +++++++.|+.|++.++|+.+++++|+.+++ .+++..+....
T Consensus 129 ~~-------~~~~~~~s~~e~~~~~-~g~~~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~~~~~~~~ 200 (484)
T 4dsg_A 129 AR-------TYTEPPNNFEESFTRQ-FGEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDLG 200 (484)
T ss_dssp HC-------CCSSCCSSHHHHHHHH-HHHHHCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHHHTCCCCC
T ss_pred hc-------cCCCCCCCHHHHHHHH-hHHHHHHHHHHHHHhhhcCCCHHHhcHHHHhccccCCCHHHHHHHHhhcccccC
Confidence 01 1125789999999997 8899999999999999999999999986532 23333321111
Q ss_pred --CCcceeeec-CCcchhhHHHHHHHHHhcCcEEEcC--ceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHH
Q 013390 149 --KNFDLVWCR-GTLREKIFEPWMDSMRTRGCEFLDG--RRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 223 (444)
Q Consensus 149 --~~~~~~~~~-gg~~~~l~~~l~~~l~~~G~~v~~~--~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ 223 (444)
....+.||. ||++ .++++|++.+.+. +|++| ++|++|..++ ++|+ ..+|+++.||+||+|+|++.+.+
T Consensus 201 ~~~~~~f~yp~~gG~~-~l~~~la~~l~~~--~i~~~~~~~V~~I~~~~--~~v~--~~~G~~~~ad~VI~a~p~~~~~~ 273 (484)
T 4dsg_A 201 WGPNATFRFPQRGGTG-IIYQAIKEKLPSE--KLTFNSGFQAIAIDADA--KTIT--FSNGEVVSYDYLISTVPFDNLLR 273 (484)
T ss_dssp CSTTSEEEEESSSCTH-HHHHHHHHHSCGG--GEEECGGGCEEEEETTT--TEEE--ETTSCEEECSEEEECSCHHHHHH
T ss_pred CCccceEEeecCCCHH-HHHHHHHhhhhhC--eEEECCCceeEEEEecC--CEEE--ECCCCEEECCEEEECCCHHHHHH
Confidence 122345664 8965 5999999877542 79999 5799999876 5453 24577899999999999999999
Q ss_pred hhhc--cCCCChHHHHHhhcCCCccEEEEEEEeccCCCCC-CCCceeeccCCC--cccceeeccccccccCCCCCeEEEE
Q 013390 224 LIKN--SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVP-NVSNACSGFGDS--LAWTFFDLNKIYDEHKDDSATVIQA 298 (444)
Q Consensus 224 ll~~--~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~-~~~~~~~g~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~ 298 (444)
++.+ +.+ ++...+.+..+.|.++.++++.|+++.... .+...++-.+.. ... +...++..+...+++.+++.+
T Consensus 274 ll~~~~~~~-~~~~~~~l~~l~y~s~~~v~l~~~~~~~~~~~~~~~i~vp~~~~~~~r-i~~~s~~~p~~ap~g~~~l~~ 351 (484)
T 4dsg_A 274 MTKGTGFKG-YDEWPAIADKMVYSSTNVIGIGVKGTPPPHLKTACWLYFPEDTSPFYR-ATVFSNYSKYNVPEGHWSLML 351 (484)
T ss_dssp HEECSSCTT-GGGHHHHHHHCCEEEEEEEEEEEESCCCGGGTTCCEEECCSTTCSCSE-EECGGGTCGGGSCTTEEEEEE
T ss_pred HhhccCCCC-CHHHHHHHhCCCcCceEEEEEEEcCCCcccCCCCeEEEEEcCCCeEEE-EEeecCCCcccCCCCeEEEEE
Confidence 9865 112 133346678899999999999999874211 111112111211 111 111233333333334444444
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCC----CCCCCCCCCCEEEeeccc
Q 013390 299 DFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY----MMRGFTSFPNLFMAGDWI 374 (444)
Q Consensus 299 ~~~~~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~----~p~~~~~~~~l~laGd~~ 374 (444)
.++.. .....+++++++.++++|.++..--....+....+.+|+.+.|.|.+|+... ++... .. ||+++|.+-
T Consensus 352 e~~~~-~~~~~~d~~l~~~a~~~L~~~~~~~~~~~~~~~~v~r~~~~yP~y~~~~~~~~~~~~~~l~-~~-~l~~~Gr~g 428 (484)
T 4dsg_A 352 EVSES-KYKPVNHSTLIEDCIVGCLASNLLLPEDLLVSKWHYRIEKGYPTPFIGRNNLLEKAQPELM-SR-CIYSRGRFG 428 (484)
T ss_dssp EEEEB-TTBCCCTTSHHHHHHHHHHHTTSCCTTCCEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHH-HT-TEEECSTTT
T ss_pred EEecC-cCCcCCHHHHHHHHHHHHHHcCCCCccceEEEEEEEEeCccccCCCccHHHHHHHHHHHHH-hC-CcEeecCCc
Confidence 44333 3446789999999999999985322222356667889999999999997532 21121 23 899999865
Q ss_pred ccCCCcchhhHHHHHHHHHHHHHH
Q 013390 375 TTRHGSWSQERSYVTGLEAANRVV 398 (444)
Q Consensus 375 ~~~~~~~~~egAv~SG~~aA~~il 398 (444)
.-.|++..|+.|+.||+.||+.|+
T Consensus 429 ~~~y~v~~~d~~i~sg~~aa~~i~ 452 (484)
T 4dsg_A 429 AWRYEVGNQDHSFMQGVEAIDHVL 452 (484)
T ss_dssp TCCGGGCSHHHHHHHHHHHHHHHT
T ss_pred ccccCCCChHHHHHHHHHHHHHHH
Confidence 333321379999999999999986
No 13
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=99.90 E-value=5.3e-22 Score=201.65 Aligned_cols=294 Identities=12% Similarity=0.075 Sum_probs=159.5
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCCCcceeeecCCcchhhHHHHHHHHHhc
Q 013390 96 ITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTR 175 (444)
Q Consensus 96 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l~~~l~~~ 175 (444)
.|+.+++.++..++. ++.++.... ..++..|.+.++...+ +... ... ....+++||++ .|+++|++.+++.
T Consensus 164 ~~~~~~~~~~~~~~~-l~~~l~~~~-~~~g~~p~~~~~~~~~--~~~~--~~~--~G~~~p~GG~~-~l~~aL~~~~~~~ 234 (501)
T 4dgk_A 164 RSVYSKVASYIEDEH-LRQAFSFHS-LLVGGNPFATSSIYTL--IHAL--ERE--WGVWFPRGGTG-ALVQGMIKLFQDL 234 (501)
T ss_dssp HHHHHHHHTTCCCHH-HHHHHHHHH-HHHHSCC--CCCTHHH--HHHH--HSC--CCEEEETTHHH-HHHHHHHHHHHHT
T ss_pred ccHHHHHHHHhccHH-HHhhhhhhh-cccCCCcchhhhhhhh--hhhh--hcc--CCeEEeCCCCc-chHHHHHHHHHHh
Confidence 478889998766666 455655322 3345566666654332 2221 222 23468999965 5999999999999
Q ss_pred CcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhHH-HhhhccCCCChHHHHHhhcCCC-ccEEEEEE
Q 013390 176 GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSILCNREEFLKVLNLAS-IDVVSVKL 252 (444)
Q Consensus 176 G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~~-~ll~~~~l~~~~~~~~l~~l~~-~~~~~v~l 252 (444)
|++|++|++|++|..++ +++++|++. |+++.||+||++++++.+. .|++..+.+ ......+++.++ .+.+++++
T Consensus 235 Gg~I~~~~~V~~I~~~~--~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~~~~-~~~~~~~~~~~~~~s~~~~~~ 311 (501)
T 4dgk_A 235 GGEVVLNARVSHMETTG--NKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPAA-VKQSNKLQTKRMSNSLFVLYF 311 (501)
T ss_dssp TCEEECSCCEEEEEEET--TEEEEEEETTSCEEECSCEEECCC----------------------------CCEEEEEEE
T ss_pred CCceeeecceeEEEeeC--CeEEEEEecCCcEEEcCEEEECCCHHHHHHHhccccccc-hhhhhhhhccccCCceeEEEe
Confidence 99999999999999998 779888886 8899999999999987654 566654332 222345556655 45778899
Q ss_pred EeccCCCCCCCCceeeccCC----------C-c---cccee-eccccccccCCCCCeEEEEE-EecCCCCCCC----CHH
Q 013390 253 WFDKKVTVPNVSNACSGFGD----------S-L---AWTFF-DLNKIYDEHKDDSATVIQAD-FYHANELMPL----KDD 312 (444)
Q Consensus 253 ~~d~~~~~~~~~~~~~g~~~----------~-~---~~~~~-d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~e 312 (444)
.++.+......++.+++.+. + . ...+. ..+...+.+++++.+.+.+. ..+...+.+. .++
T Consensus 312 ~l~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ap~G~~~~~~~~~~p~~~~~~~~~~~~~~ 391 (501)
T 4dgk_A 312 GLNHHHDQLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGCGSYYVLAPVPHLGTANLDWTVEGP 391 (501)
T ss_dssp EESSCCTTSCSEEEEEECC-------------CCCEEEEEEECGGGTCGGGSSTTCEEEEEEEEECCTTTSCCCHHHHHH
T ss_pred cccCCccccccceeccccchhhhccccccccccccCCceecccCCCCCCCcCCCCCceEEEEEecCccccccccHHHHHH
Confidence 99887642222222322110 0 0 00001 11222344454455544332 2222222222 245
Q ss_pred HHHHHHHHHHHhh-ccCCCCCeeeeEEEEEeCCCccc-----------cCCC---CCCCCCCCC-CCCCCEEEeeccccc
Q 013390 313 QVVAKAVSYLSKC-IKDFSTATVMDHKIRRFPKSLTH-----------FFPG---SYKYMMRGF-TSFPNLFMAGDWITT 376 (444)
Q Consensus 313 e~~~~~l~~l~~~-~p~~~~~~~~~~~v~r~~~~~~~-----------~~pg---~~~~~p~~~-~~~~~l~laGd~~~~ 376 (444)
++.+++++.|++. +|+++. .++...+. .|.+.-. ..+. ....||... ++++|||+||+++++
T Consensus 392 ~~~~~vl~~l~~~~~P~~~~-~i~~~~~~-tP~~~~~~~~~~~G~~~g~~~~~~q~~~~RP~~~~t~i~gLyl~G~~t~p 469 (501)
T 4dgk_A 392 KLRDRIFAYLEQHYMPGLRS-QLVTHRMF-TPFDFRDQLNAYHGSAFSVEPVLTQSAWFRPHNRDKTITNLYLVGAGTHP 469 (501)
T ss_dssp HHHHHHHHHHHHHTCTTHHH-HEEEEEEE-CTTTTC------------------------------CCTTEEECCCH---
T ss_pred HHHHHHHHHHHHhhCCChHH-ceEEEEEC-CHHHHHHHcCCCCccccChhcchhhccccCCCCCCCCCCCEEEECCCCCC
Confidence 6788889999875 599874 56665554 4543311 1111 112466543 789999999999864
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHhCCCCc
Q 013390 377 RHGSWSQERSYVTGLEAANRVVDYLGDGSF 406 (444)
Q Consensus 377 ~~~~~~~egAv~SG~~aA~~il~~lg~~~~ 406 (444)
+++++||+.||+.||++|+++|.+|+-
T Consensus 470 ---G~Gv~ga~~SG~~aA~~il~dL~gG~~ 496 (501)
T 4dgk_A 470 ---GAGIPGVIGSAKATAGLMLEDLIGGSH 496 (501)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHC----
T ss_pred ---cccHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 257999999999999999999976653
No 14
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=99.89 E-value=4.1e-23 Score=208.24 Aligned_cols=299 Identities=11% Similarity=0.096 Sum_probs=191.7
Q ss_pred ccCccHHH--HHHHhCC--CHHHHHHHHHHHHH-hhcCCChhhchHHHHHHHHHHHHHhcCCCcceeeecCCcchhhHHH
Q 013390 93 YDSITARE--LFKQFGC--SERLYRNVIGPLVQ-VGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEP 167 (444)
Q Consensus 93 ~d~~s~~~--~l~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~ 167 (444)
.+++|+.+ |+.+... .....+.++++++. ..++.+++..|+..+... ..+. .......+.++.||+. .+++.
T Consensus 135 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~-~~~~~~~~~~~~gG~~-~l~~~ 211 (472)
T 1b37_A 135 RDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPL-ATFS-DFGDDVYFVADQRGYE-AVVYY 211 (472)
T ss_dssp TTCCBHHHHHHHHHTSSSSCCSHHHHHHHHHHTHHHHSSCGGGBBSTTTSSC-HHHH-HHCSEEEEECCTTCTT-HHHHH
T ss_pred chhhhHHHHHHHhhhcccccccHHHHHHHHHHHhhhhcccccccchhhcccc-cccc-ccCCceeeeecCCcHH-HHHHH
Confidence 56788765 6765421 11123556666653 335667777775433211 1110 1111112223478965 49999
Q ss_pred HHHHHHhc--------CcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhHHHhhh--ccCCCChHHH
Q 013390 168 WMDSMRTR--------GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIK--NSILCNREEF 236 (444)
Q Consensus 168 l~~~l~~~--------G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~~~ll~--~~~l~~~~~~ 236 (444)
|++.+.+. |++|++|++|++|..++ ++|+ |.+. |++++||+||+|+|++++.+++. .+.++ ....
T Consensus 212 l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~--~~v~-v~~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp-~~~~ 287 (472)
T 1b37_A 212 LAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSP--GGVT-VKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLP-TWKV 287 (472)
T ss_dssp HHHTTSCBCTTTCCBCCTTEESSCCEEEEEECS--SCEE-EEETTSCEEEESEEEECSCHHHHHTTSSEEESCCC-HHHH
T ss_pred HHHhccccccccccccccEEEcCCEEEEEEEcC--CcEE-EEECCCCEEEcCEEEEecCHHHhccCCeeECCCCC-HHHH
Confidence 99887654 67999999999999987 4576 6665 77899999999999999987642 34442 3445
Q ss_pred HHhhcCCCccEEEEEEEeccCCCCCCCCceee--ccCCCcccceeeccccccccCCCCCeEEEEEEec--CCCCCCCCHH
Q 013390 237 LKVLNLASIDVVSVKLWFDKKVTVPNVSNACS--GFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDD 312 (444)
Q Consensus 237 ~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~--g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e 312 (444)
+.++.+.+.++.++++.|++++|...+...+. .........++.. ..+. . +++.++.+.+.+ +..|..++++
T Consensus 288 ~ai~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~-p~~~~l~~~~~~~~a~~~~~~~~~ 363 (472)
T 1b37_A 288 RAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQE--FEKQ-Y-PDANVLLVTVTDEESRRIEQQSDE 363 (472)
T ss_dssp HHHHHSEEECEEEEEEECSSCCSCCSTTCSEEEECCSSTTSSCEEEE--CTTT-S-TTCCEEEEEEEHHHHHHHHTSCHH
T ss_pred HHHHhcCCcceeEEEEECCCcCCCCCCCcceEEecccCCccceeeec--ccCC-C-CCCCEEEEEechHHHHHHHhCCHH
Confidence 67888888889999999999988432111111 1111101112211 1111 1 234444443332 2245667899
Q ss_pred HHHHHHHHHHHhhccCCCCCeeeeEEEEEeCC------CccccCCCCCC-CCCCCCCCCCCEEEeecccccCCCcchhhH
Q 013390 313 QVVAKAVSYLSKCIKDFSTATVMDHKIRRFPK------SLTHFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQER 385 (444)
Q Consensus 313 e~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~------~~~~~~pg~~~-~~p~~~~~~~~l~laGd~~~~~~~~~~~eg 385 (444)
++.+.++++|++++|+.....++...+.+|.. +.+.+.||+.. .++..++|++||||||+++++.++ ++|+|
T Consensus 364 e~~~~~l~~L~~~~Pg~~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~~~~~l~~p~~~l~fAG~~t~~~~~-g~v~G 442 (472)
T 1b37_A 364 QTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYN-GYVHG 442 (472)
T ss_dssp HHHHHHHHHHHHHCTTSCCCCCSEEECCCTTTCTTTSSSEEECBTTCCHHHHHHHHCCBTTEEECSGGGCTTTT-TSHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCceEEecccCCCCCCCcccCCCCCCCChhHHHHHhccCCcEEEeecccCCCCC-CchhH
Confidence 99999999999999875423466666777832 22334456542 234456789999999999997777 79999
Q ss_pred HHHHHHHHHHHHHHHhCC
Q 013390 386 SYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 386 Av~SG~~aA~~il~~lg~ 403 (444)
|+.||++||++|++.+++
T Consensus 443 A~~SG~~aA~~i~~~l~~ 460 (472)
T 1b37_A 443 AYLSGIDSAEILINCAQK 460 (472)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999864
No 15
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=99.88 E-value=8.8e-21 Score=188.89 Aligned_cols=274 Identities=13% Similarity=0.084 Sum_probs=187.1
Q ss_pred hccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcC-----CCcceeeecCCcchhhHH
Q 013390 92 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ-----KNFDLVWCRGTLREKIFE 166 (444)
Q Consensus 92 ~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~-----~~~~~~~~~gg~~~~l~~ 166 (444)
.+| +|+.+|+.+.+.++. ...++.+++...++.+++++|+..++.++... +.. ...+. .+.+|+.. +++
T Consensus 138 ~~d-~s~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~g~~~-l~~ 211 (431)
T 3k7m_X 138 DLD-IPLNEYVDKLDLPPV-SRQFLLAWAWNMLGQPADQASALWMLQLVAAH--HYSILGVVLSLDE-VFSNGSAD-LVD 211 (431)
T ss_dssp GGC-SBHHHHHHHHTCCHH-HHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHT--TSCHHHHHHTCCE-EETTCTHH-HHH
T ss_pred hhc-CCHHHHHHhcCCCHH-HHHHHHHHHHHhcCCChhhhhHHHHHHHHHhc--CCccceeecchhh-hcCCcHHH-HHH
Confidence 456 999999999877776 45678888889999999999998887766532 000 00111 45677543 666
Q ss_pred HHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhHHHhhhccCCCChHHHHHhhcCCCc
Q 013390 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASI 245 (444)
Q Consensus 167 ~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~l~~l~~~ 245 (444)
.++ ++.| +|++|++|++|+.++ ++|+ |.+. |++++||+||+|+|++.+.++...+.++ ....+.+..+.+.
T Consensus 212 ~~~---~~~g-~i~~~~~V~~i~~~~--~~v~-v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~-~~~~~~~~~~~~~ 283 (431)
T 3k7m_X 212 AMS---QEIP-EIRLQTVVTGIDQSG--DVVN-VTVKDGHAFQAHSVIVATPMNTWRRIVFTPALP-ERRRSVIEEGHGG 283 (431)
T ss_dssp HHH---TTCS-CEESSCCEEEEECSS--SSEE-EEETTSCCEEEEEEEECSCGGGGGGSEEESCCC-HHHHHHHHHCCCC
T ss_pred HHH---hhCC-ceEeCCEEEEEEEcC--CeEE-EEECCCCEEEeCEEEEecCcchHhheeeCCCCC-HHHHHHHHhCCCc
Confidence 554 3456 999999999999877 4476 6665 6679999999999999998886555553 3334567777788
Q ss_pred cEEEEEEEeccCCCCCCCCceeeccCCCcccceeeccccccccCCCCCeEEEEEEecCCCCCCCCHHHHHHHHHHHHHhh
Q 013390 246 DVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKC 325 (444)
Q Consensus 246 ~~~~v~l~~d~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~l~~l~~~ 325 (444)
..+++.+.|+++++ . +++.++.....++++... . .++.++.. +...+.+...+.+ .+.+.|+++
T Consensus 284 ~~~kv~~~~~~~~~---~---i~~~~d~~~~~~~~~~~~----~-~~~~~l~~-~~~g~~~~~~~~~----~~~~~l~~~ 347 (431)
T 3k7m_X 284 QGLKILIHVRGAEA---G---IECVGDGIFPTLYDYCEV----S-ESERLLVA-FTDSGSFDPTDIG----AVKDAVLYY 347 (431)
T ss_dssp CEEEEEEEEESCCT---T---EEEEBSSSSSEEEEEEEC----S-SSEEEEEE-EEETTTCCTTCHH----HHHHHHHHH
T ss_pred ceEEEEEEECCCCc---C---ceEcCCCCEEEEEeCcCC----C-CCCeEEEE-EeccccCCCCCHH----HHHHHHHHh
Confidence 88999999998864 1 222222222223443311 0 13334333 3333333333332 356678888
Q ss_pred ccCCCCCeeeeEEEEEeCCCc------cccCCCCC-CCCCCCCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHH
Q 013390 326 IKDFSTATVMDHKIRRFPKSL------THFFPGSY-KYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 398 (444)
Q Consensus 326 ~p~~~~~~~~~~~v~r~~~~~------~~~~pg~~-~~~p~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il 398 (444)
+|+. .++.....+|.... ..+.||.. ..++....|.++|||||++|+..|+ ++||||+.||.+||++|+
T Consensus 348 ~~~~---~~~~~~~~~W~~d~~~~G~~~~~~~g~~~~~~~~l~~p~g~~~fAGe~t~~~~~-g~~~GA~~sg~raa~~i~ 423 (431)
T 3k7m_X 348 LPEV---EVLGIDYHDWIADPLFEGPWVAPRVGQFSRVHKELGEPAGRIHFVGSDVSLEFP-GYIEGALETAECAVNAIL 423 (431)
T ss_dssp CTTC---EEEEEECCCTTTCTTTSSSSCCCCTTTTTTSSGGGGSCBTTEEECSGGGCSSST-TSHHHHHHHHHHHHHHHH
T ss_pred cCCC---CccEeEecccCCCCCCCCCCCCcCCCCCcccHHHHhCCCCcEEEEehhhhccCC-eEehHHHHHHHHHHHHHH
Confidence 8865 36677777885432 23456654 3456666789999999999998888 899999999999999998
Q ss_pred H
Q 013390 399 D 399 (444)
Q Consensus 399 ~ 399 (444)
.
T Consensus 424 ~ 424 (431)
T 3k7m_X 424 H 424 (431)
T ss_dssp H
T ss_pred h
Confidence 6
No 16
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=99.88 E-value=2.5e-21 Score=186.90 Aligned_cols=229 Identities=10% Similarity=0.095 Sum_probs=161.2
Q ss_pred eecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhHHHhhhcc--CCC
Q 013390 155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNS--ILC 231 (444)
Q Consensus 155 ~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~~~ll~~~--~l~ 231 (444)
...+|+. .+++.+++.+ |++|++|++|++|..++ ++++ |.++ |++++||+||+|+|++++.+|+.+. .++
T Consensus 106 ~~~~g~~-~l~~~l~~~~---g~~i~~~~~V~~i~~~~--~~~~-v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l~ 178 (342)
T 3qj4_A 106 VAPQGIS-SIIKHYLKES---GAEVYFRHRVTQINLRD--DKWE-VSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLIS 178 (342)
T ss_dssp ECTTCTT-HHHHHHHHHH---TCEEESSCCEEEEEECS--SSEE-EEESSSCCEEESEEEECSCHHHHTTCBSTHHHHSC
T ss_pred ecCCCHH-HHHHHHHHhc---CCEEEeCCEEEEEEEcC--CEEE-EEECCCCEEEcCEEEECCCHHHHHHHhcccccccC
Confidence 3467865 4888887654 89999999999999987 4465 6665 6678999999999999999998652 231
Q ss_pred ChHHHHHhhcCCCccEEEEEEEeccCCCCCCCCceeeccCCC-cccceeeccccccccCCCCCeEEEEEEec--CCCCCC
Q 013390 232 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS-LAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMP 308 (444)
Q Consensus 232 ~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 308 (444)
....+.+.+++|.++.++++.|+++++.+.++..+...+.. ..|.++|.+. .....++++..+.+...+ ++++.+
T Consensus 179 -~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k-~~r~~~~~~~~~v~~~~~~~~~~~~~ 256 (342)
T 3qj4_A 179 -ECQRQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNKK-RNIESSEIGPSLVIHTTVPFGVTYLE 256 (342)
T ss_dssp -HHHHHHHHTCCBCCEEEEEEECSSCC--CCSCSEEECSSCSSEEEEEEHHHH-TTCCCC-CCCEEEEEECHHHHHHTTT
T ss_pred -HHHHHHHhcCCccccEEEEEEECCCCccCCceeeEEccCCcceEEEEccccC-CCCCCCCCCceEEEECCHHHHHHhhc
Confidence 33457889999999999999999886644444333222222 4564444332 211111233333332221 235677
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCC--CCCCCEEEeecccccCCCcchhhHH
Q 013390 309 LKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF--TSFPNLFMAGDWITTRHGSWSQERS 386 (444)
Q Consensus 309 ~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~--~~~~~l~laGd~~~~~~~~~~~egA 386 (444)
++++++.+.++++|.++++... .++++.++||+++.|.+... .++... ...++|++||||+.. +++|+|
T Consensus 257 ~~~~~~~~~~~~~l~~~~g~~~--~p~~~~v~rW~~a~p~~~~~---~~~~~~~~~~~~~l~laGd~~~g----~~v~~a 327 (342)
T 3qj4_A 257 HSIEDVQELVFQQLENILPGLP--QPIATKCQKWRHSQVTNAAA---NCPGQMTLHHKPFLACGGDGFTQ----SNFDGC 327 (342)
T ss_dssp SCHHHHHHHHHHHHHHHSCSCC--CCSEEEEEEETTCSBSSCCS---SSCSCEEEETTTEEEECSGGGSC----SSHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCC--CCceeeeccccccccccccC---CCcceeEecCCccEEEEccccCC----CCccHH
Confidence 8999999999999999999654 57889999999999887542 123222 356899999999963 689999
Q ss_pred HHHHHHHHHHHHHHh
Q 013390 387 YVTGLEAANRVVDYL 401 (444)
Q Consensus 387 v~SG~~aA~~il~~l 401 (444)
+.||+++|++|++.|
T Consensus 328 i~sg~~aa~~i~~~l 342 (342)
T 3qj4_A 328 ITSALCVLEALKNYI 342 (342)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999997643
No 17
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=99.87 E-value=2.5e-20 Score=189.10 Aligned_cols=289 Identities=14% Similarity=0.054 Sum_probs=180.7
Q ss_pred hhccCccHHHHHHHhC-CCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCCCcceeeecCCcchhhHHHHH
Q 013390 91 RKYDSITARELFKQFG-CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWM 169 (444)
Q Consensus 91 ~~~d~~s~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l~ 169 (444)
..++++|+.+|+++.+ .+...++.+. -++.... ....+....+..... .. .......+.||++ .|++.|+
T Consensus 178 ~~~~~~s~~~~l~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~--~~--~~~~~~~~~gG~~-~l~~~l~ 248 (498)
T 2iid_A 178 NKYDTYSTKEYLIKEGDLSPGAVDMIG-DLLNEDS---GYYVSFIESLKHDDI--FA--YEKRFDEIVDGMD-KLPTAMY 248 (498)
T ss_dssp HHHTTSBHHHHHHHTSCCCHHHHHHHH-HHTTCGG---GTTSBHHHHHHHHHH--HT--TCCCEEEETTCTT-HHHHHHH
T ss_pred HHhhhhhHHHHHHHccCCCHHHHHHHH-HhcCccc---chhHHHHHHHHHHhc--cc--cCcceEEeCCcHH-HHHHHHH
Confidence 3578899999999865 4666554332 2221110 001121111111111 11 1223456789965 5999999
Q ss_pred HHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCe----EEecCEEEEccChhhHHHhhhccCCCChHHHHHhhcCCC
Q 013390 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE----TYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLAS 244 (444)
Q Consensus 170 ~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~----~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~l~~l~~ 244 (444)
+.+.. +|++|++|++|..++ ++|. |.+ +|+ +++||+||+|+|+..+.++...++++ ....+.++++.+
T Consensus 249 ~~l~~---~i~~~~~V~~I~~~~--~~v~-v~~~~~~~~~~~~~ad~vI~t~p~~~~~~i~f~p~Lp-~~~~~ai~~l~~ 321 (498)
T 2iid_A 249 RDIQD---KVHFNAQVIKIQQND--QKVT-VVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLL-PKKAHALRSVHY 321 (498)
T ss_dssp HHTGG---GEESSCEEEEEEECS--SCEE-EEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCC-HHHHHHHHHCCE
T ss_pred Hhccc---ccccCCEEEEEEECC--CeEE-EEEecCCcccceEEeCEEEECCChHHHhheecCCCCC-HHHHHHHHhCCC
Confidence 87753 799999999999987 4475 554 343 57999999999999888876555553 344567889999
Q ss_pred ccEEEEEEEeccCCCCCCCCceeecc-CCCcccceeeccccccccCCCCCeEEEEEEec--CCCCCCCCHHHHHHHHHHH
Q 013390 245 IDVVSVKLWFDKKVTVPNVSNACSGF-GDSLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSY 321 (444)
Q Consensus 245 ~~~~~v~l~~d~~~~~~~~~~~~~g~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ee~~~~~l~~ 321 (444)
.++.++++.|++++|.+......... +....+.+++ +.. .+ .+..++.....+ +..+..++++++.+.++++
T Consensus 322 ~~~~kv~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-s~~---~p-~g~~~L~~~~~g~~a~~~~~~~~~~~~~~~l~~ 396 (498)
T 2iid_A 322 RSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYP-NHN---FT-NGVGVIIAYGIGDDANFFQALDFKDCADIVFND 396 (498)
T ss_dssp ECEEEEEEEESSCGGGGGTCCSSEEEESSTTCEEECC-SSC---CT-TSCEEEEEEEEHHHHHTTTTSCHHHHHHHHHHH
T ss_pred cceeEEEEEeCCCCccCCCccCCcccCCCCcceEEEC-CCC---CC-CCCcEEEEEeCCccHhhhhcCCHHHHHHHHHHH
Confidence 99999999999998843221001111 1122222232 211 11 233444443222 3457778999999999999
Q ss_pred HHhhccCCCC---CeeeeEEEEEeCCCccccCCCCCCC---------CCCCCCCCCCEEEeecccccCCCcchhhHHHHH
Q 013390 322 LSKCIKDFST---ATVMDHKIRRFPKSLTHFFPGSYKY---------MMRGFTSFPNLFMAGDWITTRHGSWSQERSYVT 389 (444)
Q Consensus 322 l~~~~p~~~~---~~~~~~~v~r~~~~~~~~~pg~~~~---------~p~~~~~~~~l~laGd~~~~~~~~~~~egAv~S 389 (444)
|+++++.... .......+.+|.... |..|++.. ++...++.++|||||++++..+ ++|+||+.|
T Consensus 397 L~~~~g~~~~~~~~~~~~~~~~~W~~~p--~~~G~~~~~~~~~~~~~~~~l~~p~~~l~fAGe~t~~~~--g~~~GAi~S 472 (498)
T 2iid_A 397 LSLIHQLPKKDIQSFCYPSVIQKWSLDK--YAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQAH--GWIDSTIKS 472 (498)
T ss_dssp HHHHHTCCHHHHHHHEEEEEEEEGGGCT--TTCSSEECCCTTHHHHHHHHHHCCBTTEEECSGGGSSSS--SCHHHHHHH
T ss_pred HHHHcCCChhhhhhhcCccEEEecCCCC--CCCceeeecCCcchHHHHHHHhCCCCcEEEEEcccccCC--cCHHHHHHH
Confidence 9999973211 012235667886532 23333321 1223457899999999997543 689999999
Q ss_pred HHHHHHHHHHHhCCC
Q 013390 390 GLEAANRVVDYLGDG 404 (444)
Q Consensus 390 G~~aA~~il~~lg~~ 404 (444)
|++||++|++.++.+
T Consensus 473 G~raA~~i~~~l~~~ 487 (498)
T 2iid_A 473 GLRAARDVNLASENP 487 (498)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999998743
No 18
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=99.84 E-value=5.8e-20 Score=192.12 Aligned_cols=228 Identities=17% Similarity=0.186 Sum_probs=157.7
Q ss_pred eeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-C------CeEEecCEEEEccChhhHHHh--
Q 013390 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G------KETYSAGAVVLAVGISTLQEL-- 224 (444)
Q Consensus 154 ~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~------g~~~~ad~VI~a~p~~~~~~l-- 224 (444)
..+.||++ .|+++|++ +.+|++|++|++|..++ ++|+ |++ + +++++||+||+|+|+.+++++
T Consensus 394 ~~~~gG~~-~l~~~La~-----~l~I~l~~~V~~I~~~~--~~v~-V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~~ 464 (662)
T 2z3y_A 394 LTVRNGYS-CVPVALAE-----GLDIKLNTAVRQVRYTA--SGCE-VIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPP 464 (662)
T ss_dssp EEETTCTT-HHHHHHTT-----TCEEETTEEEEEEEEET--TEEE-EEEEESSCTTCEEEEEESEEEECCCHHHHHCSSC
T ss_pred eeecCcHH-HHHHHHHh-----cCceecCCeEEEEEECC--CcEE-EEEeecccCCCCeEEEeCEEEECCCHHHHhcccC
Confidence 44678965 48887764 56899999999999987 4465 443 2 467999999999999999874
Q ss_pred --hhccCCCChHHHHHhhcCCCccEEEEEEEeccCCCCCCCCceeeccC------CCcccceeeccccccccCCCCCeEE
Q 013390 225 --IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG------DSLAWTFFDLNKIYDEHKDDSATVI 296 (444)
Q Consensus 225 --l~~~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~------~~~~~~~~d~~~~~~~~~~~~~~~~ 296 (444)
...+++| ....+.++++.+.++.+|++.|++++|.+. .. .+|.. .+..+.+|+.+ ..+ ++
T Consensus 465 ~i~f~P~LP-~~k~~Ai~~l~~g~~~KV~l~f~~~fW~~~-~~-~~G~l~~~~~~~~~~~~~~~~~--------~~~-vL 532 (662)
T 2z3y_A 465 AVQFVPPLP-EWKTSAVQRMGFGNLNKVVLCFDRVFWDPS-VN-LFGHVGSTTASRGELFLFWNLY--------KAP-IL 532 (662)
T ss_dssp SSEEESCCC-HHHHHHHHHSEECCCEEEEEECSSCCSCTT-CS-EEEECCSSSTTTTEEEEEECCS--------SSS-EE
T ss_pred ceEEcCCCC-HHHHHHHHhCCccceeEEEEEcCcccccCC-CC-ceeeecCCCCCCCceeEEEeCC--------CCC-EE
Confidence 2344453 333467889999999999999999998532 11 23221 11112233321 123 33
Q ss_pred EEEEec--CCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCc-----c-ccCCCCCCC------CC----
Q 013390 297 QADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSL-----T-HFFPGSYKY------MM---- 358 (444)
Q Consensus 297 ~~~~~~--~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~-----~-~~~pg~~~~------~p---- 358 (444)
...+.+ +..+..++++++++.++++|.++|+.....++....+++|..+. + .+.||.... .|
T Consensus 533 ~~~~~G~~a~~~~~lsdee~~~~~l~~L~~~~g~~~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~ 612 (662)
T 2z3y_A 533 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPG 612 (662)
T ss_dssp EEEECTHHHHHHTTSCHHHHHHHHHHHHHHHHCTTSSCCCSEEEECCTTTCTTTSSSCEECBTTCCTHHHHHHHCCBCC-
T ss_pred EEEeccHhHHHHHhCCHHHHHHHHHHHHHHHhCCcccCCCceeEEEEECCCCCCCcccccCCCCCchhhHHHHhCcCccc
Confidence 333332 33466789999999999999999986432357888888997652 2 234554310 11
Q ss_pred ----CCCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 359 ----RGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 359 ----~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
...++.++|||||++|+..|+ ++||||+.||.+||++|++.+++
T Consensus 613 ~~~~~~~~~~grl~FAGe~ts~~~~-g~v~GAi~SG~raA~~i~~~~~g 660 (662)
T 2z3y_A 613 PSIPGAPQPIPRLFFAGEHTIRNYP-ATVHGALLSGLREAGRIADQFLG 660 (662)
T ss_dssp --------CCCCEEECSGGGCTTST-TSHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccccccCCCCcEEEEeccccCCCC-cCHHHHHHHHHHHHHHHHHHccC
Confidence 123456899999999998788 89999999999999999998864
No 19
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=99.83 E-value=1.5e-19 Score=191.72 Aligned_cols=228 Identities=17% Similarity=0.190 Sum_probs=159.9
Q ss_pred eeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-C------CeEEecCEEEEccChhhHHHhh-
Q 013390 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G------KETYSAGAVVLAVGISTLQELI- 225 (444)
Q Consensus 154 ~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~------g~~~~ad~VI~a~p~~~~~~ll- 225 (444)
..+.||++. |+++|++ +.+|++|++|++|.+++ ++|+ |++ + +++++||+||+|+|+.++++++
T Consensus 565 ~~~~gG~~~-L~~aLa~-----~l~I~Lnt~V~~I~~~~--~gV~-V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~~ 635 (852)
T 2xag_A 565 LTVRNGYSC-VPVALAE-----GLDIKLNTAVRQVRYTA--SGCE-VIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPP 635 (852)
T ss_dssp EEETTCTTH-HHHHHTT-----TCCEECSEEEEEEEEET--TEEE-EEEEESSSTTCEEEEEESEEEECCCHHHHHCSSC
T ss_pred EEecCcHHH-HHHHHHh-----CCCEEeCCeEEEEEEcC--CcEE-EEEeecccCCCCeEEECCEEEECCCHHHHHhhhc
Confidence 456799664 8888764 45799999999999987 4465 443 2 4679999999999999998742
Q ss_pred ---hccCCCChHHHHHhhcCCCccEEEEEEEeccCCCCCCCCceeeccC------CCcccceeeccccccccCCCCCeEE
Q 013390 226 ---KNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG------DSLAWTFFDLNKIYDEHKDDSATVI 296 (444)
Q Consensus 226 ---~~~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~------~~~~~~~~d~~~~~~~~~~~~~~~~ 296 (444)
..++++ ....+.++++.+.++.+|++.|++++|... .. .+|.. .+..+.+|+.. ....++
T Consensus 636 ~I~F~P~LP-~~k~~AI~~l~~g~v~KV~L~F~~~fW~~~-~~-~fG~l~~~~~~~~~l~~~~~~~--------~~pvLl 704 (852)
T 2xag_A 636 AVQFVPPLP-EWKTSAVQRMGFGNLNKVVLCFDRVFWDPS-VN-LFGHVGSTTASRGELFLFWNLY--------KAPILL 704 (852)
T ss_dssp SSEEESCCC-HHHHHHHHHSEECCCEEEEEECSSCCSCTT-CC-EEEECCSSSTTTTTTCEEEECS--------SSSEEE
T ss_pred ccccCCCCC-HHHHHHHHcCCccceEEEEEEcCCcccCCC-CC-eeeeeccccCCCCceEEEecCC--------CCCEEE
Confidence 344453 333467889999999999999999999532 11 33321 11223344322 123333
Q ss_pred EEEEe--cCCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCc------cccCCCCCCC------C-----
Q 013390 297 QADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSL------THFFPGSYKY------M----- 357 (444)
Q Consensus 297 ~~~~~--~~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~------~~~~pg~~~~------~----- 357 (444)
+.+. .+..+..++++++++.++++|.++|+.....++....+++|..+. ..+.||.... .
T Consensus 705 -~~v~G~~a~~l~~lsdeel~~~~l~~L~~ifG~~~~~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~~~~~~L~~P~~~~ 783 (852)
T 2xag_A 705 -ALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPG 783 (852)
T ss_dssp -EEECHHHHHHGGGSCHHHHHHHHHHHHHHHHCTTTCCCCSEEEECCTTTCTTTSSSCEECBTTCCTTHHHHTTSCBCCC
T ss_pred -EEecCcCHHHHhcCCHHHHHHHHHHHHHHHhCccccCCceEEEEEecCCCCCcCccccccCCCcchhhHHHHhCccccc
Confidence 3332 234566789999999999999999986432357888888997652 2234554321 1
Q ss_pred ---CCCCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 358 ---MRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 358 ---p~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
|...++.++|||||++|+..|+ ++||||+.||.+||++|++.++.
T Consensus 784 ~~~p~~~~~~grL~FAGE~Ts~~~~-gtveGAi~SG~RAA~~Il~~l~~ 831 (852)
T 2xag_A 784 PSIPGAPQPIPRLFFAGEHTIRNYP-ATVHGALLSGLREAGRIADQFLG 831 (852)
T ss_dssp CSSTTCCCCCCCEEECSGGGCTTST-TSHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccCCCCcEEEEehhHhCCCC-cCHHHHHHHHHHHHHHHHHHhhC
Confidence 1223456899999999998788 89999999999999999999864
No 20
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=99.81 E-value=1.6e-19 Score=182.72 Aligned_cols=233 Identities=12% Similarity=0.121 Sum_probs=158.5
Q ss_pred ceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CC---eEEecCEEEEccChhhHHHhhhc
Q 013390 152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGISTLQELIKN 227 (444)
Q Consensus 152 ~~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g---~~~~ad~VI~a~p~~~~~~ll~~ 227 (444)
...+++||++ .|++.|++.+.+ ++|++|++|++|..++ ++|+ |.+ +| ++++||+||+|+|++++.+|..+
T Consensus 230 ~~~~~~gG~~-~l~~~l~~~l~~--~~i~~~~~V~~i~~~~--~~v~-v~~~~g~~~~~~~ad~vI~a~p~~~l~~l~~~ 303 (489)
T 2jae_A 230 MMFTPVGGMD-RIYYAFQDRIGT--DNIVFGAEVTSMKNVS--EGVT-VEYTAGGSKKSITADYAICTIPPHLVGRLQNN 303 (489)
T ss_dssp SEEEETTCTT-HHHHHHHHHHCG--GGEETTCEEEEEEEET--TEEE-EEEEETTEEEEEEESEEEECSCHHHHTTSEEC
T ss_pred cEEeecCCHH-HHHHHHHHhcCC--CeEEECCEEEEEEEcC--CeEE-EEEecCCeEEEEECCEEEECCCHHHHHhCccC
Confidence 3556789965 599999987743 7899999999999987 5576 554 34 57999999999999998887652
Q ss_pred cCCCChHHHHHhhcCCCccEEEEEEEeccCCCCCCCCceeec----cCCCcccceeeccccccccCCCCCeEEEEEEec-
Q 013390 228 SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSG----FGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH- 302 (444)
Q Consensus 228 ~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~- 302 (444)
++ ....+.++++.+.++.++++.|++++|.+... ++| .+.......++ +.. +..+.+.++.....+
T Consensus 304 --l~-~~~~~~l~~~~~~~~~kv~l~~~~~~w~~~~~--~~g~~~~~~~~~~~~~~~-s~~---~~~~~~~l~~~~~~g~ 374 (489)
T 2jae_A 304 --LP-GDVLTALKAAKPSSSGKLGIEYSRRWWETEDR--IYGGASNTDKDISQIMFP-YDH---YNSDRGVVVAYYSSGK 374 (489)
T ss_dssp --CC-HHHHHHHHTEECCCEEEEEEEESSCHHHHTTC--CCSCEEEESSTTCEEECC-SSS---TTSSCEEEEEEEEETH
T ss_pred --CC-HHHHHHHHhCCCccceEEEEEeCCCCccCCCC--cccccccCCCCceEEEeC-CCC---CCCCCCEEEEEeeCCc
Confidence 32 34456788889999999999999988743211 221 11122222222 211 111233443322222
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHhhccC-CCCCeeeeEEEEEeCCCccc------cC------CCCCC-CCCCCCCCCCCE
Q 013390 303 -ANELMPLKDDQVVAKAVSYLSKCIKD-FSTATVMDHKIRRFPKSLTH------FF------PGSYK-YMMRGFTSFPNL 367 (444)
Q Consensus 303 -~~~~~~~~~ee~~~~~l~~l~~~~p~-~~~~~~~~~~v~r~~~~~~~------~~------pg~~~-~~p~~~~~~~~l 367 (444)
...|..++++++++.+++.|++++|. ... .+....+.+|.+..+. +. ||... .++...++.+||
T Consensus 375 ~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~-~~~~~~~~~W~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 453 (489)
T 2jae_A 375 RQEAFESLTHRQRLAKAIAEGSEIHGEKYTR-DISSSFSGSWRRTKYSESAWANWAGSGGSHGGAATPEYEKLLEPVDKI 453 (489)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHCGGGGS-SEEEEEEEEGGGSTTTSCSSCEETTC-------CCHHHHHHTSCBTTE
T ss_pred hhhhhhcCCHHHHHHHHHHHHHHHcCcchhh-hccccEEEEcCCCCCCCCcchhcccccCCCcccchhhHHHHhCCCCcE
Confidence 23466789999999999999999987 543 5777777889665321 11 33211 122234678999
Q ss_pred EEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 368 FMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 368 ~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
||||++++. ++ ++|+||+.||+++|++|++.+.
T Consensus 454 ~faG~~~~~-~~-~~v~gAi~sg~~aA~~i~~~l~ 486 (489)
T 2jae_A 454 YFAGDHLSN-AI-AWQHGALTSARDVVTHIHERVA 486 (489)
T ss_dssp EECSGGGBS-ST-TSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeEHHhcc-Cc-cHHHHHHHHHHHHHHHHHHHHh
Confidence 999999873 55 7999999999999999998875
No 21
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=99.77 E-value=7.5e-19 Score=185.18 Aligned_cols=229 Identities=17% Similarity=0.182 Sum_probs=154.3
Q ss_pred eeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhHHH--hhhccCC
Q 013390 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQE--LIKNSIL 230 (444)
Q Consensus 154 ~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~~~--ll~~~~l 230 (444)
....+|+. .+++.++ .|++|++|++|++|..++ ++|+ |++. |++++||+||+|+|+.++++ +...+++
T Consensus 527 ~~~~~G~~-~l~~aLa-----~gl~I~l~t~V~~I~~~~--~~v~-V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~L 597 (776)
T 4gut_A 527 TLLTPGYS-VIIEKLA-----EGLDIQLKSPVQCIDYSG--DEVQ-VTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPL 597 (776)
T ss_dssp EECTTCTH-HHHHHHH-----TTSCEESSCCEEEEECSS--SSEE-EEETTCCEEEESEEEECCCHHHHHTTCSEEESCC
T ss_pred EEECChHH-HHHHHHH-----hCCcEEcCCeeEEEEEcC--CEEE-EEECCCcEEEcCEEEECCCHHHHhhcccccCCCC
Confidence 45567754 4666664 377999999999999887 4476 5654 77899999999999999875 2234444
Q ss_pred CChHHHHHhhcCCCccEEEEEEEeccCCCCCCC-CceeeccCC------CcccceeeccccccccCCCCCeEEEEEEec-
Q 013390 231 CNREEFLKVLNLASIDVVSVKLWFDKKVTVPNV-SNACSGFGD------SLAWTFFDLNKIYDEHKDDSATVIQADFYH- 302 (444)
Q Consensus 231 ~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~-~~~~~g~~~------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~- 302 (444)
+ ....+.++.+.+.++.++++.|++++|.... ...++|... +....++|.+ + ..+..++...+.+
T Consensus 598 p-~~~~~ai~~l~~g~~~KV~l~f~~~FW~~~~~g~~~fG~l~~~~~~~~~~~~~~d~~---p---~g~~~vL~~~i~G~ 670 (776)
T 4gut_A 598 S-EKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMD---P---QKKHSVLMSVIAGE 670 (776)
T ss_dssp C-HHHHHHHHHEEEECCEEEEEECSSCTTHHHHTTCSEEEECCSSGGGTTEEEEEEESC---T---TSCSCEEEEEECTH
T ss_pred C-HHHHHHHHhCCCeeEEEEEEecCcccccccCCCCceEEeecCCcCCCceEEEEecCC---C---CCCceEEEEEecch
Confidence 3 3344678888888899999999999984310 011222211 1112234432 1 1223444443332
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccc------cCCCCCC-CCCCCCCCC-CCEEEeecc
Q 013390 303 -ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTH------FFPGSYK-YMMRGFTSF-PNLFMAGDW 373 (444)
Q Consensus 303 -~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~------~~pg~~~-~~p~~~~~~-~~l~laGd~ 373 (444)
+..+..++++|+++.++++|.++|+......+....+++|..+.+. +.||... ..+....|+ ++|||||++
T Consensus 671 ~a~~l~~lsdeel~~~~l~~L~~ifg~~~~~~P~~~~vt~W~~dp~s~Gsys~~~~g~~~~~~~~L~~p~~grL~FAGE~ 750 (776)
T 4gut_A 671 AVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEA 750 (776)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHTTTSCCCCCSEEEECCGGGCTTTCCSEEEEBTTCCTHHHHHHHCCBTTTEEECSGG
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHhCcccccCcceEEEecCCCCCccCCCCCccCCCCchhHHHHHhCcCCCcEEEEehh
Confidence 2346678999999999999999998643335778888889654321 2233321 111122344 789999999
Q ss_pred cccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 374 ITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 374 ~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
|+..|+ ++||||+.||.+||++|++
T Consensus 751 Ts~~~~-gtveGAi~SG~RaA~~Ila 775 (776)
T 4gut_A 751 TNRHFP-QTVTGAYLSGVREASKIAA 775 (776)
T ss_dssp GCSSSC-SSHHHHHHHHHHHHHHHHC
T ss_pred hcCCCC-cCHHHHHHHHHHHHHHHHh
Confidence 998888 8999999999999999975
No 22
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=99.77 E-value=9.5e-18 Score=166.55 Aligned_cols=276 Identities=12% Similarity=0.126 Sum_probs=164.3
Q ss_pred ccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHH-HhcCCCcceeeecCCcchhhHHHHHHH
Q 013390 93 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII-LAHQKNFDLVWCRGTLREKIFEPWMDS 171 (444)
Q Consensus 93 ~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~-~~~~~~~~~~~~~gg~~~~l~~~l~~~ 171 (444)
.+++|+.+|+++++.+. +.+.+..|++...++ +++++|+.+++.++.... +....+. ...+.||+. .+++.+.+.
T Consensus 140 ~~~~s~~~~l~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~g~~-~l~~~l~~~ 215 (424)
T 2b9w_A 140 DLMLPFDEFLALNGCEA-ARDLWINPFTAFGYG-HFDNVPAAYVLKYLDFVTMMSFAKGD-LWTWADGTQ-AMFEHLNAT 215 (424)
T ss_dssp GGGSBHHHHHHHTTCGG-GHHHHTTTTCCCCCC-CTTTSBHHHHHHHSCHHHHHHHHHTC-CBCCTTCHH-HHHHHHHHH
T ss_pred hhccCHHHHHHhhCcHH-HHHHHHHHHHhhccC-ChHhcCHHHHHHhhhHhhhhcccCCc-eEEeCChHH-HHHHHHHHh
Confidence 45789999999987764 677777888876665 678999988765543210 0101111 234578855 488888765
Q ss_pred HHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhccCCCChHHHHHhhcCCCccEEEEE
Q 013390 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVK 251 (444)
Q Consensus 172 l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~l~~l~~~~~~~v~ 251 (444)
+ +.+|++|++|++|..++ ++|+ |.+++++++||+||+|+|++.+.++++.. +++.+.+.++.+.++. +.
T Consensus 216 l---~~~v~~~~~V~~i~~~~--~~v~-v~~~~g~~~ad~Vv~a~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~-~~ 284 (424)
T 2b9w_A 216 L---EHPAERNVDITRITRED--GKVH-IHTTDWDRESDVLVLTVPLEKFLDYSDAD----DDEREYFSKIIHQQYM-VD 284 (424)
T ss_dssp S---SSCCBCSCCEEEEECCT--TCEE-EEESSCEEEESEEEECSCHHHHTTSBCCC----HHHHHHHTTCEEEEEE-EE
T ss_pred h---cceEEcCCEEEEEEEEC--CEEE-EEECCCeEEcCEEEECCCHHHHhhccCCC----HHHHHHHhcCCcceeE-EE
Confidence 4 56899999999999876 4576 77765458999999999999887665431 3333445666665533 23
Q ss_pred EEeccCCCCCCCCceeeccC--C-CcccceeeccccccccCCCCCeEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhccC
Q 013390 252 LWFDKKVTVPNVSNACSGFG--D-SLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKD 328 (444)
Q Consensus 252 l~~d~~~~~~~~~~~~~g~~--~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~l~~l~~~~p~ 328 (444)
+.+...+. . +..++... . ...+.+++...... ++...++..+......+.+.+++++++.+++.|+++.+.
T Consensus 285 ~~~~~~~~--~-~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l~~~ 358 (424)
T 2b9w_A 285 ACLVKEYP--T-ISGYVPDNMRPERLGHVMVYYHRWAD---DPHQIITTYLLRNHPDYADKTQEECRQMVLDDMETFGHP 358 (424)
T ss_dssp EEEESSCC--S-SEEECGGGGSGGGTTSCCEEEECCTT---CTTSCEEEEEECCBTTBCCCCHHHHHHHHHHHHHHTTCC
T ss_pred EEEeccCC--c-ccccccCCCCCcCCCcceEEeeecCC---CCceEEEEEeccCCCcccccChHHHHHHHHHHHHHcCCc
Confidence 33333322 1 11122111 0 11222333222211 112222222222334566778999999999999996443
Q ss_pred CCCCeeeeEEEEEeCC----CccccCCCCCCCCCCCCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHH
Q 013390 329 FSTATVMDHKIRRFPK----SLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 398 (444)
Q Consensus 329 ~~~~~~~~~~v~r~~~----~~~~~~pg~~~~~p~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il 398 (444)
.. .++.. .+|.. +.+.+..|+.+. .....+.+|+||||+|++ + +.+|+|+.||.+||++|+
T Consensus 359 ~~--~~~~~--~~w~~~p~~~~~~~~~G~~~~-~~~~~~~~~l~~aG~~~~--~--g~~e~a~~Sg~~aA~~~l 423 (424)
T 2b9w_A 359 VE--KIIEE--QTWYYFPHVSSEDYKAGWYEK-VEGMQGRRNTFYAGEIMS--F--GNFDEVCHYSKDLVTRFF 423 (424)
T ss_dssp EE--EEEEE--EEEEEEEECCHHHHHTTHHHH-HHHTTTGGGEEECSGGGS--C--SSHHHHHHHHHHHHHHHT
T ss_pred cc--ccccc--cceeeeeccCHHHHhccHHHH-HHHHhCCCCceEeccccc--c--ccHHHHHHHHHHHHHHhc
Confidence 21 22221 23421 112233333221 111235679999999985 3 579999999999999875
No 23
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=99.76 E-value=2.2e-17 Score=168.11 Aligned_cols=286 Identities=12% Similarity=0.123 Sum_probs=167.3
Q ss_pred ccCccHHHHHHHh------CCCHHHHHHHHHHHH---HhhcCCChhhchHHHHHHHHHHHHHhcCCCcceeeecCCcchh
Q 013390 93 YDSITARELFKQF------GCSERLYRNVIGPLV---QVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREK 163 (444)
Q Consensus 93 ~d~~s~~~~l~~~------~~~~~~~~~~~~~~~---~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~ 163 (444)
.+++|+.+|+.+. ..++.. ..++.+++ ...++.+++++|+.+++ ....+ ...+++| + +.
T Consensus 136 ~~d~s~~~~l~~~l~~~~~~l~~~~-~~~~~~~~~~~~~~~g~~~~~~s~~~~~--------~~~~~-~~~~~~g-~-~~ 203 (516)
T 1rsg_A 136 VSDCSFFQLVMKYLLQRRQFLTNDQ-IRYLPQLCRYLELWHGLDWKLLSAKDTY--------FGHQG-RNAFALN-Y-DS 203 (516)
T ss_dssp --CCBHHHHHHHHHHHHGGGSCHHH-HHHHHHHHGGGHHHHTBCTTTSBHHHHC--------CCCSS-CCEEESC-H-HH
T ss_pred CCCCCHHHHHHHHHHHhhcccCHHH-HHHHHHHHHHHHHHhCCChHHCChHHHH--------hhccC-cchhhhC-H-HH
Confidence 5779999998763 122221 22333332 23456778888876432 11111 1235566 4 45
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhHHHh-----------hhccCCC
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQEL-----------IKNSILC 231 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~~~l-----------l~~~~l~ 231 (444)
|++.|++.+. +++|++|++|++|..+++ +.|. |.+. |++++||+||+|+|+.+++.. ...++++
T Consensus 204 l~~~l~~~l~--~~~i~~~~~V~~I~~~~~-~~v~-v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp 279 (516)
T 1rsg_A 204 VVQRIAQSFP--QNWLKLSCEVKSITREPS-KNVT-VNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLK 279 (516)
T ss_dssp HHHHHHTTSC--GGGEETTCCEEEEEECTT-SCEE-EEETTSCEEEEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCC
T ss_pred HHHHHHHhCC--CCEEEECCEEEEEEEcCC-CeEE-EEECCCcEEECCEEEECCCHHHhhhccccccccccceEecCCCC
Confidence 8888877654 368999999999998642 4464 6665 778999999999999998743 2233442
Q ss_pred ChHHHHHhhcCCCccEEEEEEEeccCCCCCCCCceeeccCC-C--c-----------------------------ccc--
Q 013390 232 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD-S--L-----------------------------AWT-- 277 (444)
Q Consensus 232 ~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~-~--~-----------------------------~~~-- 277 (444)
....+.++++.+.++.++++.|++++|.... ..+.+... + . .|.
T Consensus 280 -~~~~~ai~~~~~~~~~Kv~l~f~~~fW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (516)
T 1rsg_A 280 -PVIQDAFDKIHFGALGKVIFEFEECCWSNES-SKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQP 357 (516)
T ss_dssp -HHHHHHTTSSCCCCCEEEEEEESSCCSCCSC-SEEEECCCCCHHHHHHHHHCCSHHHHHHHC---------CCCTTSSC
T ss_pred -HHHHHHHHhCCCCcceEEEEEeCCCCCCCCC-CcEEEeCCCCccchhhcccCcccchhhhcccccccccccccccccCc
Confidence 3445778999999999999999999985432 11211110 0 0 010
Q ss_pred --eeeccccccccCCCCCeEEEEEEecC--CCCCCC--CHHHHHHH---HHHHHHhhcc------CCCC---------Ce
Q 013390 278 --FFDLNKIYDEHKDDSATVIQADFYHA--NELMPL--KDDQVVAK---AVSYLSKCIK------DFST---------AT 333 (444)
Q Consensus 278 --~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~ee~~~~---~l~~l~~~~p------~~~~---------~~ 333 (444)
+++.. . .+..+.++ ....+. ..+..+ +++++.+. +++++.++|+ +... ..
T Consensus 358 ~~~~~~~---~--~~~~~~L~-~~~~g~~a~~~~~l~~~~~~~~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~a~~p~ 431 (516)
T 1rsg_A 358 LFFVNLS---K--STGVASFM-MLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPV 431 (516)
T ss_dssp EEEEEHH---H--HTSCSEEE-EEECBTHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTTCCCCEECCC-------CCSCE
T ss_pred eeEEEee---e--cCCCcEEE-EEecchHHHHHHhcCCCHHHHHHHHHHHHHHHHhhccccccccCCCCcccccccCCCc
Confidence 00000 0 01123343 322221 223344 77887654 5566655553 3221 11
Q ss_pred eeeEEEEEeCCCcc-----c-cCCCCCCC--CCCCC-CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 334 VMDHKIRRFPKSLT-----H-FFPGSYKY--MMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 334 ~~~~~v~r~~~~~~-----~-~~pg~~~~--~p~~~-~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
+....+++|....+ . +.||.... ..... .+.++|||||++|+..|+ ++|+||+.||.+||++|++.++.
T Consensus 432 ~~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~~l~~~~~~rl~FAGe~ts~~~~-g~v~GA~~SG~raA~~i~~~~~~ 509 (516)
T 1rsg_A 432 LRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGA-GCAYGAWESGRREATRISDLLKL 509 (516)
T ss_dssp EEEEEECCTTTCTTTTTCCCCCBC----CHHHHHHHHCSSSSEEECSTTSCSTTB-TSHHHHHHHHHHHHHHHHHHHHG
T ss_pred cceEEEecCCCCCCCCccCCCcCCCCCHHHHHHHhccCCCCcEEEeccccccCCC-ccchhHHHHHHHHHHHHHHHhhh
Confidence 22666778854421 1 23443210 01111 356789999999997788 89999999999999999998863
No 24
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=99.71 E-value=2.4e-17 Score=170.36 Aligned_cols=305 Identities=11% Similarity=0.022 Sum_probs=179.9
Q ss_pred hhccCccH---HHHHHHh-CCCHHHHHHHHHHHHHhhcC-CChhhchHHHHHHHHHHHHHhcCCCcceeeecCCcchhhH
Q 013390 91 RKYDSITA---RELFKQF-GCSERLYRNVIGPLVQVGLF-APAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIF 165 (444)
Q Consensus 91 ~~~d~~s~---~~~l~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~ 165 (444)
.++|+.|+ .+|+++. .++ ... .++..+..+..+ .+....|+..++.... ... +.+...+.||+ +.|+
T Consensus 279 ~~~d~~S~~~~~~~L~~~~~~s-~~~-~~~~~~~~~~gg~~~~~~~S~le~L~~~~----~~~-~~~~~~i~GG~-~~L~ 350 (721)
T 3ayj_A 279 VAFEKGTLPPVDGVLDVDESIS-YYV-ELFGRFGFGTGGFKPLYNISLVEMMRLIL----WDY-SNEYTLPVTEN-VEFI 350 (721)
T ss_dssp HHHHHTSSCCGGGTSCHHHHHH-HHH-HHHHHHCSSSSCCGGGTTBBHHHHHHHHH----TTT-TCEECCSSSST-HHHH
T ss_pred HhhcccchhHHHHHHHhccccH-HHH-HHHHHHhhccCCCCCccchhHHHHHHHHh----cCC-ccceeEECCcH-HHHH
Confidence 35788888 8888541 122 212 223322222222 3445778776655541 221 23345578995 4599
Q ss_pred HHHHHHHHhcCcEEEcCceee--EEEecCCCC------eEEEE-EeC-Ce--EEecCEEEEccChhhHHHhh-----h--
Q 013390 166 EPWMDSMRTRGCEFLDGRRVT--DFIYDEERC------CISDV-VCG-KE--TYSAGAVVLAVGISTLQELI-----K-- 226 (444)
Q Consensus 166 ~~l~~~l~~~G~~v~~~~~V~--~I~~~~~~g------~v~~v-~~~-g~--~~~ad~VI~a~p~~~~~~ll-----~-- 226 (444)
++|++.+.. |+.|++|++|+ +|..+++ + .|+ | ... |+ +++||+||+|+|+..+..++ .
T Consensus 351 ~aLa~~l~~-g~~I~l~~~V~~~~I~~~~~-g~~~~~~~V~-V~~~~~G~~~~~~aD~VIvTvP~~~L~~~~~r~~i~~~ 427 (721)
T 3ayj_A 351 RNLFLKAQN-VGAGKLVVQVRQERVANACH-SGTASARAQL-LSYDSHNAVHSEAYDFVILAVPHDQLTPIVSRSGFEHA 427 (721)
T ss_dssp HHHHHHHHH-HTTTSEEEEEECEEEEEEEE-CSSSSCCEEE-EEEETTCCEEEEEESEEEECSCHHHHHHHHSSSCSSCE
T ss_pred HHHHHhccc-CCceEeCCEEEeeeEEECCC-CCccccceEE-EEEecCCceEEEEcCEEEECCCHHHHhhcccccccccc
Confidence 999988642 67899999999 9998764 3 365 4 333 55 78999999999999986422 1
Q ss_pred --------------------ccC-CCC-------hHHHHHhhcCCCccEEEEEEEe-----ccCCCCCCCCcee--ecc-
Q 013390 227 --------------------NSI-LCN-------REEFLKVLNLASIDVVSVKLWF-----DKKVTVPNVSNAC--SGF- 270 (444)
Q Consensus 227 --------------------~~~-l~~-------~~~~~~l~~l~~~~~~~v~l~~-----d~~~~~~~~~~~~--~g~- 270 (444)
.++ +-+ ....+.++++.+.+..|+.+.| ++++|... .+.. ...
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~~s~Kv~l~~~~~~~~~~fW~~~-~g~~i~~s~T 506 (721)
T 3ayj_A 428 ASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMARSSKVFATVKTAALDQPWVPQW-RGEPIKAVVS 506 (721)
T ss_dssp EEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEECEEEEEEEEEGGGGGSTTSCEE-TTEECCEEEE
T ss_pred ccccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCcccceEEEEEEccccCCCCccccc-CCCCceeeec
Confidence 121 101 2334778999999999999999 99998532 1100 011
Q ss_pred CCCcccc-ee-eccccccccCCCCCeEEEEEEe-c--CCCC------CCCCHHHH-------HHHHHHHHH--hhccCCC
Q 013390 271 GDSLAWT-FF-DLNKIYDEHKDDSATVIQADFY-H--ANEL------MPLKDDQV-------VAKAVSYLS--KCIKDFS 330 (444)
Q Consensus 271 ~~~~~~~-~~-d~~~~~~~~~~~~~~~~~~~~~-~--~~~~------~~~~~ee~-------~~~~l~~l~--~~~p~~~ 330 (444)
+.+.... ++ ..+ . ..+.+++..++.+.|. . +..+ ..+++++. ++.++++++ +++|+..
T Consensus 507 D~~~r~~~~~p~p~-~-~d~~~~~~gvlL~sYtwg~dA~~~~~~~g~~~~~~~er~~~~~~~~~~~l~~la~~~~~p~~~ 584 (721)
T 3ayj_A 507 DSGLAASYVVPSPI-V-EDGQAPEYSSLLASYTWEDDSTRLRHDFGLYPQNPATETGTADGMYRTMVNRAYRYVKYAGAS 584 (721)
T ss_dssp TTTTEEEEEEECSC-C-----CCSEEEEEEEEEETHHHHHHHTTCCSSSEESSSSSCCCHHHHHHHHHHTCCEECCTTCS
T ss_pred CCCcceEEEeccCc-c-cccCCCCCcEEEEEEeCccchhhhhccccccCCChHHhhhhhhHHHHHHHHHHhhhccCcccc
Confidence 1122111 11 000 0 0111123344333343 1 2223 33444444 999999999 8888754
Q ss_pred -----------CC-eeeeEEEEEeCCCc-----cccCCCCC-------CCC--CCCCCCCCCEEEeecccccCCCcchhh
Q 013390 331 -----------TA-TVMDHKIRRFPKSL-----THFFPGSY-------KYM--MRGFTSFPNLFMAGDWITTRHGSWSQE 384 (444)
Q Consensus 331 -----------~~-~~~~~~v~r~~~~~-----~~~~pg~~-------~~~--p~~~~~~~~l~laGd~~~~~~~~~~~e 384 (444)
.. .+.+...++|...- ..+.||.. .+. .....+.++||||||+++ .++ |++|
T Consensus 585 ~~~~~~~~~l~~~~~~~~~~~~dW~~dps~Gaf~~~~pgq~~~~~l~~~~~~~~~~~~~~gri~fAGe~~S-~~~-GWie 662 (721)
T 3ayj_A 585 NAQPWWFYQLLAEARTADRFVFDWTTNKTAGGFKLDMTGDHHQSNLCFRYHTHALAASLDNRFFIASDSYS-HLG-GWLE 662 (721)
T ss_dssp SCEECHHHHHHHTSCSTTCEEEEGGGSTTSSSEECCBTTTHHHHHHHHHGGGGGGCTTTCCCEEECSGGGS-SCT-TSHH
T ss_pred ccccchhhhhhhhcccCceEEEeCCCCCCCCccccCCCccchhhhhhhhhhhhccccCCCCCEEEeehhhc-cCC-ceeh
Confidence 10 02334566785432 22345541 111 112235588999999998 566 7999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccccc
Q 013390 385 RSYVTGLEAANRVVDYLGDGSFSKIIP 411 (444)
Q Consensus 385 gAv~SG~~aA~~il~~lg~~~~~~~~~ 411 (444)
||+.||.+||..|+..++.+...+..+
T Consensus 663 GAl~Sa~~Aa~~i~~~~~~~~~~~~~~ 689 (721)
T 3ayj_A 663 GAFMSALNAVAGLIVRANRGDVSALST 689 (721)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCGGGBCT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccCc
Confidence 999999999999999998766655555
No 25
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=99.64 E-value=9.1e-15 Score=140.20 Aligned_cols=222 Identities=14% Similarity=0.129 Sum_probs=149.4
Q ss_pred cCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEE-ecCEEEEccChhhHHHhhhccCCCChH
Q 013390 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETY-SAGAVVLAVGISTLQELIKNSILCNRE 234 (444)
Q Consensus 157 ~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~-~ad~VI~a~p~~~~~~ll~~~~l~~~~ 234 (444)
..++. .+.+.+.+ |++|+++++|++|+.+++ +++ |.++ |+.. .||.||+|+|+..+.+++... ++
T Consensus 106 ~~~~~-~l~~~l~~-----g~~i~~~~~v~~i~~~~~--~~~-v~~~~g~~~~~a~~vV~a~g~~~~~~~~~~~----~~ 172 (336)
T 1yvv_A 106 KPGMS-AITRAMRG-----DMPVSFSCRITEVFRGEE--HWN-LLDAEGQNHGPFSHVIIATPAPQASTLLAAA----PK 172 (336)
T ss_dssp SSCTH-HHHHHHHT-----TCCEECSCCEEEEEECSS--CEE-EEETTSCEEEEESEEEECSCHHHHGGGGTTC----HH
T ss_pred CccHH-HHHHHHHc-----cCcEEecCEEEEEEEeCC--EEE-EEeCCCcCccccCEEEEcCCHHHHHHhhccC----HH
Confidence 34543 35555432 889999999999998873 465 6665 6555 499999999999988877542 33
Q ss_pred HHHHhhcCCCccEEEEEEEeccCCCCCCCCceeeccCCCcccceeeccccccccCCCCCeEEEEEEec--CCCCCCCCHH
Q 013390 235 EFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDD 312 (444)
Q Consensus 235 ~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e 312 (444)
....+..+.|.++.++.+.++++++.+. ..++-.+....| +++.+.. +... +.+..+.....+ +..+.+++++
T Consensus 173 l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-l~~~~~~-p~~~-~~~~~~v~~~~~~~~~~~~~~~~~ 247 (336)
T 1yvv_A 173 LASVVAGVKMDPTWAVALAFETPLQTPM--QGCFVQDSPLDW-LARNRSK-PERD-DTLDTWILHATSQWSRQNLDASRE 247 (336)
T ss_dssp HHHHHTTCCEEEEEEEEEEESSCCSCCC--CEEEECSSSEEE-EEEGGGS-TTCC-CSSEEEEEEECHHHHHHTTTSCHH
T ss_pred HHHHHhhcCccceeEEEEEecCCCCCCC--CeEEeCCCceeE-EEecCcC-CCCC-CCCcEEEEEeCHHHHHHHHhCCHH
Confidence 3356788899999999999998876432 222212223344 4544432 2111 111222222121 2356678999
Q ss_pred HHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCCCCCCCEEEeecccccCCCcchhhHHHHHHHH
Q 013390 313 QVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLE 392 (444)
Q Consensus 313 e~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~ 392 (444)
++.+++++.+.++++... ..+....+.+|..+.+.+..+... ...+.++|+|||||++. +++++|+.||.+
T Consensus 248 ~~~~~l~~~l~~~lg~~~-~~p~~~~~~rw~~a~~~~~~~~~~----~~~~~~rl~laGDa~~g----~gv~~a~~sg~~ 318 (336)
T 1yvv_A 248 QVIEHLHGAFAELIDCTM-PAPVFSLAHRWLYARPAGAHEWGA----LSDADLGIYVCGDWCLS----GRVEGAWLSGQE 318 (336)
T ss_dssp HHHHHHHHHHHTTCSSCC-CCCSEEEEEEEEEEEESSCCCCSC----EEETTTTEEECCGGGTT----SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC-CCCcEEEccccCccCCCCCCCCCe----eecCCCCEEEEecCCCC----CCHHHHHHHHHH
Confidence 999999999999997432 135566788898877776554321 11345899999999963 589999999999
Q ss_pred HHHHHHHHhCCCC
Q 013390 393 AANRVVDYLGDGS 405 (444)
Q Consensus 393 aA~~il~~lg~~~ 405 (444)
+|+.|.+.+.++.
T Consensus 319 lA~~l~~~~~~~~ 331 (336)
T 1yvv_A 319 AARRLLEHLQLEH 331 (336)
T ss_dssp HHHHHHHHTTC--
T ss_pred HHHHHHHHhhhhh
Confidence 9999999998654
No 26
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=99.63 E-value=4.7e-15 Score=147.23 Aligned_cols=204 Identities=14% Similarity=0.201 Sum_probs=143.3
Q ss_pred ccccCCChhHHHHHHHhCCCCCCCCcc-cceec-c---------CCccccccccccCCCCCCCccccccccCCCCChhhh
Q 013390 2 QGFWYPFRNIFSLVDELGIKPFTGWMK-SAQYS-E---------EGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDR 70 (444)
Q Consensus 2 h~~~~~~~~~~~Ll~elGl~~~~~~~~-~~~~~-~---------~G~~~~~~~~~~~~~~p~p~~~~~~~~~~~ls~~~k 70 (444)
|.|+.++.+++++|.++|+...+.|.. ...|. . +|+ +. ++ |.+....++.+.+++.||
T Consensus 93 P~~l~~~g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~------~~---~V--Pss~~e~~~~~lLs~~eK 161 (475)
T 3p1w_A 93 PKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKF------IH---KV--PATDMEALVSPLLSLMEK 161 (475)
T ss_dssp CCBEETTSHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEE------EE---EC--CCSHHHHHTCTTSCHHHH
T ss_pred CeEeecCcHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCc------eE---eC--CCCHHHHhhccCCCHHHH
Confidence 567889999999999999998888874 33332 2 232 21 23 445445668899999999
Q ss_pred hhhhhhHHHHhhcCCC-hhhHh--hccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHH--H
Q 013390 71 LTSLPLMAAVIDFDNT-DVAWR--KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--L 145 (444)
Q Consensus 71 l~~~~l~~~~~~~~~~-~~~~~--~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~--~ 145 (444)
.++.+++..+.++... +..++ ++++.|+.+|++++++++.+.+.++.++.... ..+..+.|+...+..+..+. +
T Consensus 162 ~~l~kFL~~l~~~~~~~~~~~~~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~-~~~~~~~~a~~~l~ri~~y~~Sl 240 (475)
T 3p1w_A 162 NRCKNFYQYVSEWDANKRNTWDNLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYL-NDDYLKQPAYLTLERIKLYMQSI 240 (475)
T ss_dssp HHHHHHHHHHHHCCTTCGGGSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCS-SSGGGGSBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccchhhhcccccCCCHHHHHHHcCCCHHHHHHHHHHHHhhc-CCCcccCCHHHHHHHHHHHHHHH
Confidence 9988876665554311 12222 24689999999999999997764444432222 23345567776666544442 1
Q ss_pred hcCCCcceeeecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 146 AHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 146 ~~~~~~~~~~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
+..++..+.||+||+++ |++++++.+++.|++|++|++|++|..+.+ |++++|.++ |++++||+||++.+..
T Consensus 241 ~~yg~s~~~yp~gG~~~-L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~-g~v~gV~~~~G~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 241 SAFGKSPFIYPLYGLGG-IPEGFSRMCAINGGTFMLNKNVVDFVFDDD-NKVCGIKSSDGEIAYCDKVICDPSYV 313 (475)
T ss_dssp HHHSSCSEEEETTCTTH-HHHHHHHHHHHC--CEESSCCEEEEEECTT-SCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred hhcCCCceEEECCCHHH-HHHHHHHHHHHcCCEEEeCCeEEEEEEecC-CeEEEEEECCCcEEECCEEEECCCcc
Confidence 22235667899999765 999999999999999999999999998333 678889886 6789999999999764
No 27
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=99.58 E-value=4.4e-12 Score=129.54 Aligned_cols=222 Identities=12% Similarity=0.118 Sum_probs=146.8
Q ss_pred CChhHHHHHHHhCCCCCCCCcc-ccee-ccCCccccccccccCCCCCCCccccccccCCCCChhhhhhhhhhHHHHhhcC
Q 013390 7 PFRNIFSLVDELGIKPFTGWMK-SAQY-SEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFD 84 (444)
Q Consensus 7 ~~~~~~~Ll~elGl~~~~~~~~-~~~~-~~~G~~~~~~~~~~~~~~p~p~~~~~~~~~~~ls~~~kl~~~~l~~~~~~~~ 84 (444)
....+.+||.++|+...+.|.. ...| ..+|+ +. .+ |.+...+++.+.+++.+|.++.+++..+..+.
T Consensus 235 ~~g~lv~LL~~sgV~~yLEFk~v~~~y~~~~G~------~~---~V--Pas~~eif~s~~Lsl~EKr~L~kFl~~~~~~~ 303 (650)
T 1vg0_A 235 SRGLLIDLLIKSNVSRYAEFKNITRILAFREGT------VE---QV--PCSRADVFNSKQLTMVEKRMLMKFLTFCVEYE 303 (650)
T ss_dssp SSSHHHHHHHHHTGGGGCCEEECCEEEEESSSS------EE---EC--CCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGG
T ss_pred CCcHHHHHHHHcCCcceeeEEEccceEEecCCC------Ee---EC--CCCHHHHHhCcCCCHHHHHHHHHHHHHHHHhc
Confidence 3556899999999988888764 2333 35664 22 23 44444566779999999999888766554543
Q ss_pred CChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHH--HhcCCCcceeeecCCcch
Q 013390 85 NTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGTLRE 162 (444)
Q Consensus 85 ~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~--~~~~~~~~~~~~~gg~~~ 162 (444)
..+..++.++..|+.+||++++.++.+++.+... + +++..+ ..++...+..+..++ ++..+...+.|+.||+++
T Consensus 304 ~~p~~~~~~d~~S~~d~L~~~~ls~~L~~~L~~~-l-al~~~~--~~pa~~~l~~i~~~l~sl~~yg~sg~~yp~GG~g~ 379 (650)
T 1vg0_A 304 EHPDEYRAYEGTTFSEYLKTQKLTPNLQYFVLHS-I-AMTSET--TSCTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGE 379 (650)
T ss_dssp GCHHHHHTTTTSBHHHHHTTSSSCHHHHHHHHHH-T-TC--CC--SCBHHHHHHHHHHHHHHTTSSSSSSEEEETTCTTH
T ss_pred cChHHHhhhccCCHHHHHHHhCCCHHHHHHHHHH-H-hccCCC--CCchhHHHHHHHHHHHHHHhhccCceEEeCCchhH
Confidence 2334456789999999999998899865444332 2 333222 123443332222221 122223456789999765
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhHHHhhhccCCCChHHHHHhhc
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN 241 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~l~~ 241 (444)
|+++|++.++..|++|++|++|++|..++++|++++|.+. |+++.||+||++ +.. ++.. ....
T Consensus 380 -L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~--~~~----lp~~---------~~~~ 443 (650)
T 1vg0_A 380 -LPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIE--DSY----LSEN---------TCSR 443 (650)
T ss_dssp -HHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEE--GGG----BCTT---------TTTT
T ss_pred -HHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEC--hhh----cCHh---------Hhcc
Confidence 9999999999999999999999999987632468888754 889999999993 222 1111 0112
Q ss_pred CCCccEEEEEEEeccCCC
Q 013390 242 LASIDVVSVKLWFDKKVT 259 (444)
Q Consensus 242 l~~~~~~~v~l~~d~~~~ 259 (444)
..+..+..+.+.+++++.
T Consensus 444 ~~~~~v~R~i~i~~~pi~ 461 (650)
T 1vg0_A 444 VQYRQISRAVLITDGSVL 461 (650)
T ss_dssp CCCEEEEEEEEEESSCSS
T ss_pred ccccceEEEEEEecCCCC
Confidence 234567778888898865
No 28
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=99.58 E-value=6.7e-13 Score=132.63 Aligned_cols=196 Identities=11% Similarity=0.137 Sum_probs=121.9
Q ss_pred CChhHHHHHHHhCCCCCCCCcc-ccee-ccCCccccccccccCCCCCCCccccccccCCCCChhhhhhhhhhHHHHhhcC
Q 013390 7 PFRNIFSLVDELGIKPFTGWMK-SAQY-SEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFD 84 (444)
Q Consensus 7 ~~~~~~~Ll~elGl~~~~~~~~-~~~~-~~~G~~~~~~~~~~~~~~p~p~~~~~~~~~~~ls~~~kl~~~~l~~~~~~~~ 84 (444)
.+..+.++++++|+...+.+.. ...| ..+|+.+ ++| .+....+....+++.+|.++.+++..+.++.
T Consensus 93 ~~~~l~~ll~~lg~~~~l~~~~~~~~~~~~~g~~~---------~~p--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (453)
T 2bcg_G 93 ANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIY---------KVP--ANEIEAISSPLMGIFEKRRMKKFLEWISSYK 161 (453)
T ss_dssp TTSHHHHHHHHHTGGGTCCEEECCCEEEEETTEEE---------ECC--SSHHHHHHCTTSCHHHHHHHHHHHHHHHHCB
T ss_pred cCcHHHHHHHhcCCccceEEEEccceeEEeCCeEE---------ECC--CChHHHHhhhccchhhHHHHHHHHHHHHHhc
Confidence 5678999999999976655543 1222 2467532 122 2212223445567777776655544433322
Q ss_pred CC-hhhHh--hccCccHHHHHHHhCCCHHHHHHHHHHHHHh----hcCCChhhchHHHHHHHHHHHHHhcCCCcceeeec
Q 013390 85 NT-DVAWR--KYDSITARELFKQFGCSERLYRNVIGPLVQV----GLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCR 157 (444)
Q Consensus 85 ~~-~~~~~--~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~ 157 (444)
.. +..+. .++..|+.+|+++++.++.+.+ ++...+.. .+...|...++..+..++... .......+.+++
T Consensus 162 ~~~p~~~~~~~~~~~s~~~~l~~~~~~~~l~~-~l~~~~~l~~~~~~~~~p~~~~~~~~~~~~~s~--~~~~~~~~~~p~ 238 (453)
T 2bcg_G 162 EDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKE-FIGHAMALWTNDDYLQQPARPSFERILLYCQSV--ARYGKSPYLYPM 238 (453)
T ss_dssp TTBGGGSTTCCTTTSBHHHHHHHTTCCHHHHH-HHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHH--HHHSSCSEEEET
T ss_pred cCCchhhhccccccCCHHHHHHHhCCCHHHHH-HHHHHHHhccCccccCCchHHHHHHHHHHHHHH--HhhcCCceEeeC
Confidence 11 11111 2468899999999888888554 44322210 111223333332222222211 111123345889
Q ss_pred CCcchhhHHHHHHHHHhcCcEEEcCceeeEEEec--CCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYD--EERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 158 gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~--~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
||++ .|++++++.+++.|++|++|++|++|..+ + +++++|.++|+++.||+||+|++++
T Consensus 239 gG~~-~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~--~~~~~V~~~g~~~~ad~VV~a~~~~ 299 (453)
T 2bcg_G 239 YGLG-ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDT--GKFEGVKTKLGTFKAPLVIADPTYF 299 (453)
T ss_dssp TCTT-HHHHHHHHHHHHTTCEEECSCCCCEEEEETTT--TEEEEEEETTEEEECSCEEECGGGC
T ss_pred CCHH-HHHHHHHHHHHHcCCEEECCCEEEEEEEECCC--CeEEEEEECCeEEECCEEEECCCcc
Confidence 9966 59999999999999999999999999987 5 6787888889999999999999987
No 29
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=99.55 E-value=1.8e-12 Score=128.67 Aligned_cols=199 Identities=9% Similarity=0.079 Sum_probs=125.9
Q ss_pred CChhHHHHHHHhCCCCCCCCcc--cceeccCCccccccccccCCCCCCCccccccccCCCCChhhhhhhhhhHHHHhhcC
Q 013390 7 PFRNIFSLVDELGIKPFTGWMK--SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFD 84 (444)
Q Consensus 7 ~~~~~~~Ll~elGl~~~~~~~~--~~~~~~~G~~~~~~~~~~~~~~p~p~~~~~~~~~~~ls~~~kl~~~~l~~~~~~~~ 84 (444)
....+.++++++|+...+.+.. ..+...+|+.+ .+| .+....+....+++.+|.++.+++..+.++.
T Consensus 85 ~~~~l~~ll~~lgl~~~l~~~~~~~~~~~~~g~~~---------~~p--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 153 (433)
T 1d5t_A 85 ANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIY---------KVP--STETEALASNLMGMFEKRRFRKFLVFVANFD 153 (433)
T ss_dssp TTSHHHHHHHHHTGGGGCCEEECCEEEEEETTEEE---------ECC--CSHHHHHHCSSSCHHHHHHHHHHHHHHHHCC
T ss_pred ccchHHHHHHHcCCccceEEEEeCceEEeeCCEEE---------ECC--CCHHHHhhCcccChhhHHHHHHHHHHHHhhc
Confidence 4467899999999986555442 22222466532 122 2221223344556667766555544433332
Q ss_pred CC-hhh--HhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHH--hcCCCcceeeecCC
Q 013390 85 NT-DVA--WRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--AHQKNFDLVWCRGT 159 (444)
Q Consensus 85 ~~-~~~--~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~--~~~~~~~~~~~~gg 159 (444)
.. +.. ..+++++|+.+|+++++.++.+. .++...+....+.++.+.++...+..+..+.. ...+...+.+++||
T Consensus 154 ~~~p~~~~~~~~~~~s~~~~l~~~~~~~~l~-~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~g~~~~~~p~gG 232 (433)
T 1d5t_A 154 ENDPKTFEGVDPQNTSMRDVYRKFDLGQDVI-DFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYG 232 (433)
T ss_dssp TTCGGGGTTCCTTTSBHHHHHHHTTCCHHHH-HHHHHHTSCCSSSGGGGSBSHHHHHHHHHHHHSCCSSSCCSEEEETTC
T ss_pred ccCchhccccccccCCHHHHHHHcCCCHHHH-HHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCcC
Confidence 11 110 11357899999999988888854 44443222222345556665544333333321 11122345689999
Q ss_pred cchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 160 ~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
++ .++++|++.+++.|++|++|++|++|..++ +++++|.++|+++.||+||+|++++.
T Consensus 233 ~~-~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~--~~v~~v~~~g~~~~ad~VV~a~~~~~ 290 (433)
T 1d5t_A 233 LG-ELPQGFARLSAIYGGTYMLNKPVDDIIMEN--GKVVGVKSEGEVARCKQLICDPSYVP 290 (433)
T ss_dssp TT-HHHHHHHHHHHHHTCCCBCSCCCCEEEEET--TEEEEEEETTEEEECSEEEECGGGCG
T ss_pred HH-HHHHHHHHHHHHcCCEEECCCEEEEEEEeC--CEEEEEEECCeEEECCEEEECCCCCc
Confidence 65 599999999999999999999999999887 67887888899999999999999874
No 30
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=99.45 E-value=1.6e-14 Score=140.22 Aligned_cols=203 Identities=12% Similarity=0.035 Sum_probs=125.4
Q ss_pred ccccCCChhHHHHHHHhCCCCCCCCcccceeccCCccccccccccCCCCCCCccccc-cccCCCCChhhhhhhhhhHHHH
Q 013390 2 QGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPLMAAV 80 (444)
Q Consensus 2 h~~~~~~~~~~~Ll~elGl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~p~p~~~~~-~~~~~~ls~~~kl~~~~l~~~~ 80 (444)
|+|...+++++++++++|... .+........+|+.+ ++|.....+. ++.. .++.+..+ ++...
T Consensus 56 ~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~g~~~---------~~p~~~~~~~~l~~~--~~~~~~~~---~l~~~ 119 (367)
T 1i8t_A 56 HIFHTNDKYIWDYVNDLVEFN--RFTNSPLAIYKDKLF---------NLPFNMNTFHQMWGV--KDPQEAQN---IINAQ 119 (367)
T ss_dssp CCEEESCHHHHHHHHTTSCBC--CCCCCCEEEETTEEE---------ESSBSHHHHHHHHCC--CCHHHHHH---HHHHH
T ss_pred ceecCCCHHHHHHHHHhhhhh--hccccceEEECCeEE---------EcCCCHHHHHHHhcc--CCHHHHHH---HHHHH
Confidence 677788999999999998632 222222222456521 2222211111 1111 12222211 22221
Q ss_pred hhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCC-Ccce-eeecC
Q 013390 81 IDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK-NFDL-VWCRG 158 (444)
Q Consensus 81 ~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~-~~~~-~~~~g 158 (444)
.. . +...+++|+.+|+.++ +++++.+.++.|++.+.++.+++++|+..+..+.......+.. ...+ ++|+|
T Consensus 120 ~~---~---~~~~~~~s~~~~~~~~-~g~~~~~~~~~p~~~~~~~~~~~~lsa~~~~~l~~~~~~~~~~~~~~~~~~p~g 192 (367)
T 1i8t_A 120 KK---K---YGDKVPENLEEQAISL-VGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQGIPVG 192 (367)
T ss_dssp TT---T---TCCCCCCSHHHHHHHH-HHHHHHHHHTHHHHHHHHSSCGGGSCTTSSCCCCBCSSSCCCSCCCSEEECBTT
T ss_pred hh---c---cCCCCCccHHHHHHHH-HhHHHHHHHHHHHHhhhhCCChHHcCHHHHhhceeeeccccccccchhhcccCC
Confidence 11 0 1124788999999997 8899999999999999999999999986542110000000110 1122 38899
Q ss_pred CcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhccCCCChHHHHH
Q 013390 159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLK 238 (444)
Q Consensus 159 g~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~ 238 (444)
|++ .++++|++ |++|++|++|++|. . . | .+.||+||+|+|++.+.++ .
T Consensus 193 G~~-~l~~~l~~-----g~~i~l~~~V~~i~--~--~-v--------~~~~D~VV~a~p~~~~~~~-------------~ 240 (367)
T 1i8t_A 193 GYT-KLIEKMLE-----GVDVKLGIDFLKDK--D--S-L--------ASKAHRIIYTGPIDQYFDY-------------R 240 (367)
T ss_dssp CHH-HHHHHHHT-----TSEEECSCCGGGSH--H--H-H--------HTTEEEEEECSCHHHHTTT-------------T
T ss_pred CHH-HHHHHHhc-----CCEEEeCCceeeec--h--h-h--------hccCCEEEEeccHHHHHHH-------------h
Confidence 955 48888764 68999999999885 2 2 3 2469999999999876543 1
Q ss_pred hhcCCCccEEEEEEEeccCCC
Q 013390 239 VLNLASIDVVSVKLWFDKKVT 259 (444)
Q Consensus 239 l~~l~~~~~~~v~l~~d~~~~ 259 (444)
+.+++|.+...+.+.+|++..
T Consensus 241 l~~l~y~s~~~v~~~~d~~~~ 261 (367)
T 1i8t_A 241 FGALEYRSLKFETERHEFPNF 261 (367)
T ss_dssp TCCCCEEEEEEEEEEESSSCS
T ss_pred hCCCCCceEEEEEEEeccccC
Confidence 345788888888888887643
No 31
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=99.45 E-value=3.1e-15 Score=147.04 Aligned_cols=206 Identities=10% Similarity=-0.011 Sum_probs=123.8
Q ss_pred ccccCCChhHHHHHHHhCCCCCCCCcccceeccCCccccccccccCCCCCCCccccc-cccCCCCChhhhhhhhhhHHHH
Q 013390 2 QGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPLMAAV 80 (444)
Q Consensus 2 h~~~~~~~~~~~Ll~elGl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~p~p~~~~~-~~~~~~ls~~~kl~~~~l~~~~ 80 (444)
|.|...+++++++++++|+-. .+.....+..+|+.+ ++|.....+. ++... ++ .++++. .+...
T Consensus 65 ~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~G~~~---------~~p~~~~~~~~l~~~~-~~-~~~~~~--~l~~~ 129 (399)
T 1v0j_A 65 HLFHTSNKRVWDYVRQFTDFT--DYRHRVFAMHNGQAY---------QFPMGLGLVSQFFGKY-FT-PEQARQ--LIAEQ 129 (399)
T ss_dssp CCEEESCHHHHHHHTTTCCBC--CCCCCEEEEETTEEE---------EESSSHHHHHHHHTSC-CC-HHHHHH--HHHHH
T ss_pred cEEcCCcHHHHHHHHHhhhhh--ccccceEEEECCEEE---------eCCCCHHHHHHHhccc-CC-HHHHHH--HHHHH
Confidence 677778999999999999832 222222223467632 1222111111 22221 22 233321 11111
Q ss_pred hhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCC-Ccce-eeecC
Q 013390 81 IDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK-NFDL-VWCRG 158 (444)
Q Consensus 81 ~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~-~~~~-~~~~g 158 (444)
.. . ....+++|+.+|+.+. +++++++.++.|++.+.++.+++++|+.++..+...+...... ...+ ++++|
T Consensus 130 ~~-----~-~~~~~~~s~~e~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~p~g 202 (399)
T 1v0j_A 130 AA-----E-IDTADAQNLEEKAISL-IGRPLYEAFVKGYTAKQWQTDPKELPAANITRLPVRYTFDNRYFSDTYEGLPTD 202 (399)
T ss_dssp GG-----G-SCTTC----CCHHHHH-HCHHHHHHHTHHHHHHHHTSCGGGSCGGGCSCCCCCSSSCCCSCCCSEEECBTT
T ss_pred hh-----c-cCCCCcccHHHHHHHH-HhHHHHHHHHHHHHHhhcCCChhhcChHhhhcceeEeccccchhhhhhcccccc
Confidence 11 0 0124678999999985 7888999999999999999999999987652111000001110 1123 37899
Q ss_pred CcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEE-ecCEEEEccChhhHHHhhhccCCCChHHHH
Q 013390 159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETY-SAGAVVLAVGISTLQELIKNSILCNREEFL 237 (444)
Q Consensus 159 g~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~-~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~ 237 (444)
|+. .++++|++ +.|++|++|++|++|.. . | + ++ +||+||+|+|++.+.++.
T Consensus 203 G~~-~l~~~l~~---~~g~~I~l~~~V~~I~~----~-v-----~--~~~~aD~VI~t~p~~~l~~~~------------ 254 (399)
T 1v0j_A 203 GYT-AWLQNMAA---DHRIEVRLNTDWFDVRG----Q-L-----R--PGSPAAPVVYTGPLDRYFDYA------------ 254 (399)
T ss_dssp HHH-HHHHHHTC---STTEEEECSCCHHHHHH----H-H-----T--TTSTTCCEEECSCHHHHTTTT------------
T ss_pred cHH-HHHHHHHh---cCCeEEEECCchhhhhh----h-h-----h--hcccCCEEEECCcHHHHHhhh------------
Confidence 955 48888875 46789999999999963 2 2 1 35 799999999999877651
Q ss_pred HhhcCCCccEEEEEEEeccCC
Q 013390 238 KVLNLASIDVVSVKLWFDKKV 258 (444)
Q Consensus 238 ~l~~l~~~~~~~v~l~~d~~~ 258 (444)
+..++|.++..+.+.++.+.
T Consensus 255 -l~~l~y~s~~~~~~~~~~~~ 274 (399)
T 1v0j_A 255 -EGRLGWRTLDFEVEVLPIGD 274 (399)
T ss_dssp -TCCCCEEEEEEEEEEESSSC
T ss_pred -hCCCCcceEEEEEEEEcccc
Confidence 23567877777888887653
No 32
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=99.44 E-value=6.6e-14 Score=136.76 Aligned_cols=197 Identities=11% Similarity=0.027 Sum_probs=122.6
Q ss_pred ccccCCChhHHHHHHHhCCCCCCCCcccceeccCCccccccccccCCCCCCCccccc-cccCCCCChhhhhhhhhhHHHH
Q 013390 2 QGFWYPFRNIFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPLMAAV 80 (444)
Q Consensus 2 h~~~~~~~~~~~Ll~elGl~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~p~p~~~~~-~~~~~~ls~~~kl~~~~l~~~~ 80 (444)
|+|...+++++++++++|.-. .+........+|+.+ ++|.....+. ++... +++.+..+.+ ...
T Consensus 60 ~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~g~~~---------~~P~~~~~~~~l~~~~-~~~~~~~~~l---~~~ 124 (384)
T 2bi7_A 60 HIFHTDNETVWNYVNKHAEMM--PYVNRVKATVNGQVF---------SLPINLHTINQFFSKT-CSPDEARALI---AEK 124 (384)
T ss_dssp CCEEESCHHHHHHHHTTSCEE--ECCCCEEEEETTEEE---------EESCCHHHHHHHTTCC-CCHHHHHHHH---HHH
T ss_pred eEECCCCHHHHHHHHHHhhhc--ccccceEEEECCEEE---------ECCCChhHHHHHhccc-CCHHHHHHHH---HHh
Confidence 778889999999999999621 111111222456522 1222211111 22221 2332222221 111
Q ss_pred hhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcC-CCcce-eeecC
Q 013390 81 IDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ-KNFDL-VWCRG 158 (444)
Q Consensus 81 ~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~-~~~~~-~~~~g 158 (444)
.. .. ..+++|+.+|+.+. +++++++.++.|++.+.++.+++++|+..+..+...+..... ....+ .+++|
T Consensus 125 ~~----~~---~~~~~sl~e~~~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~r~~~~~~~~~~~~~~~~~~~p~g 196 (384)
T 2bi7_A 125 GD----ST---IADPQTFEEEALRF-IGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKC 196 (384)
T ss_dssp SC----CS---CSSCCBHHHHHHHH-HCHHHHHHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEETT
T ss_pred hh----cc---CCCCcCHHHHHHHh-hcHHHHHHHHHHHHHHHhCCCHHHhCHHHHhccccccccccccccccccEEECc
Confidence 11 00 24789999999987 789999999999999999999999998754211000000110 01123 38899
Q ss_pred CcchhhHHHHHHHHHhcCcEEEcCceee-EEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhccCCCChHHHH
Q 013390 159 TLREKIFEPWMDSMRTRGCEFLDGRRVT-DFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFL 237 (444)
Q Consensus 159 g~~~~l~~~l~~~l~~~G~~v~~~~~V~-~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~ 237 (444)
|++ .++++|++ +.|++|++|++|+ +|.. .||+||+|+|++.+.++.
T Consensus 197 G~~-~l~~~l~~---~~g~~I~l~~~V~~~i~~-----------------~~d~VI~a~p~~~~~~~~------------ 243 (384)
T 2bi7_A 197 GYT-QMIKSILN---HENIKVDLQREFIVEERT-----------------HYDHVFYSGPLDAFYGYQ------------ 243 (384)
T ss_dssp HHH-HHHHHHHC---STTEEEEESCCCCGGGGG-----------------GSSEEEECSCHHHHTTTT------------
T ss_pred CHH-HHHHHHHh---cCCCEEEECCeeehhhhc-----------------cCCEEEEcCCHHHHHHhh------------
Confidence 955 58888875 4688999999999 7741 299999999999887652
Q ss_pred HhhcCCCccEEEEEEEec
Q 013390 238 KVLNLASIDVVSVKLWFD 255 (444)
Q Consensus 238 ~l~~l~~~~~~~v~l~~d 255 (444)
+..++|.+...+.+.+|
T Consensus 244 -lg~l~y~s~~~v~~~~d 260 (384)
T 2bi7_A 244 -YGRLGYRTLDFKKFTYQ 260 (384)
T ss_dssp -TCCCCEEEEEEEEEEEE
T ss_pred -cCCCCcceEEEEEEEeC
Confidence 23467877777777777
No 33
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=99.20 E-value=2.9e-11 Score=117.65 Aligned_cols=299 Identities=9% Similarity=0.062 Sum_probs=169.9
Q ss_pred ccccCCChhHHHHHHHhCCCCCCCCcc-cceeccCCccccccccccCCCCCCCccccc-cccCCCCChhhhhhhhhhHHH
Q 013390 2 QGFWYPFRNIFSLVDELGIKPFTGWMK-SAQYSEEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPLMAA 79 (444)
Q Consensus 2 h~~~~~~~~~~~Ll~elGl~~~~~~~~-~~~~~~~G~~~~~~~~~~~~~~p~p~~~~~-~~~~~~ls~~~kl~~~~l~~~ 79 (444)
|+|...++.++++++++|... .+.. ..++ .+|+. . ++|.+...+. ++.. .+++.....++. .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~g~l------~---~lP~~~~~~~~l~~~-~~~~~~~~~~l~---~ 148 (397)
T 3hdq_A 85 HIFHTNSKDVFEYLSRFTEWR--PYQHRVLAS-VDGQL------L---PIPINLDTVNRLYGL-NLTSFQVEEFFA---S 148 (397)
T ss_dssp CCCEESCHHHHHHHHTSCCEE--ECCCBEEEE-ETTEE------E---EESCCHHHHHHHHTC-CCCHHHHHHHHH---H
T ss_pred cccCCChHHHHHHHHHhhhcc--cccccceEE-ECCEE------E---EcCCChHHHHHhhcc-CCCHHHHHHHHh---h
Confidence 778889999999999999532 1122 2223 46762 2 3433322211 2221 234433322221 1
Q ss_pred HhhcCCChhhHhhccCccHHHHHHHhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCC-Ccce-eeec
Q 013390 80 VIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK-NFDL-VWCR 157 (444)
Q Consensus 80 ~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~-~~~~-~~~~ 157 (444)
.. +...+++|+++|+.+. +++++++.|+.|++.+.|+.+++++|+.++.++-......... ...+ ++|+
T Consensus 149 -~~-------~~~~~~~s~~e~~~~~-~G~~~~e~~~~py~~k~~~~~~~~Lsa~~~~Rvp~~~~~d~~yf~~~~qg~P~ 219 (397)
T 3hdq_A 149 -VA-------EKVEQVRTSEDVVVSK-VGRDLYNKFFRGYTRKQWGLDPSELDASVTARVPTRTNRDNRYFADTYQAMPL 219 (397)
T ss_dssp -HC-------CCCSSCCBHHHHHHHH-HHHHHHHHHTHHHHHHHHSSCGGGSBTTTGGGSCCCSSCCCBSCCCSEEEEET
T ss_pred -cc-------cCCCCCcCHHHHHHHh-cCHHHHHHHHHHHhCchhCCCHHHHHHHHHHhcCcccccCccchhhhheeccC
Confidence 01 1236789999999986 7899999999999999999999999987553211000000000 1223 4799
Q ss_pred CCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhccCCCChHHHH
Q 013390 158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFL 237 (444)
Q Consensus 158 gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~ 237 (444)
||++ .+++.|+ +..|++|++|++|+++ + .++.+|+||+|+|++.+...
T Consensus 220 gGy~-~l~e~l~---~~~g~~V~l~~~v~~~------~---------~~~~~d~vI~T~P~d~~~~~------------- 267 (397)
T 3hdq_A 220 HGYT-RMFQNML---SSPNIKVMLNTDYREI------A---------DFIPFQHMIYTGPVDAFFDF------------- 267 (397)
T ss_dssp TCHH-HHHHHHT---CSTTEEEEESCCGGGT------T---------TTSCEEEEEECSCHHHHTTT-------------
T ss_pred CCHH-HHHHHHH---hccCCEEEECCeEEec------c---------ccccCCEEEEcCCHHHHHHH-------------
Confidence 9965 4877775 3568999999999843 1 12468999999999776321
Q ss_pred HhhcCCCccEEEEEEEeccCCCCCCCCceeeccCCCcccceeeccccccccCCCCCeEEEEEEec--CCCCCCCCHHHHH
Q 013390 238 KVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVV 315 (444)
Q Consensus 238 ~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ee~~ 315 (444)
...+|.|.++..+.+.++.+...+..+..+ .+.....-+..+++... .+.+.+++..-|.. .+++-...+++-.
T Consensus 268 ~~g~L~yrsl~~~~~~~~~~~~~~~~~vn~--~d~~p~tRi~e~k~~~~--~~~~~t~i~~Ey~~~~~~pyYpv~~~~~~ 343 (397)
T 3hdq_A 268 CYGKLPYRSLEFRHETHDTEQLLPTGTVNY--PNDYAYTRVSEFKHITG--QRHHQTSVVYEYPRAEGDPYYPVPRPENA 343 (397)
T ss_dssp TTCCCCEEEEEEEEEEESSSCSCSSSEEEC--SSSSSCSEEEEHHHHHC--CCCSSEEEEEEEEESSSSCCEECCSHHHH
T ss_pred hcCCCCCceEEEEEEEeccccCCCCeEEEe--CCCCcceEEEeecccCC--CCCCCEEEEEEECCCCCccccccCchhHH
Confidence 134678888888888888664423322111 11111111222333311 11345666555431 1222222222222
Q ss_pred HHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHH
Q 013390 316 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAAN 395 (444)
Q Consensus 316 ~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~ 395 (444)
+...+..+.. ...+||+|+|=.-.-.| -.|+.++.+|..+++
T Consensus 344 ~~~~~y~~~a------------------------------------~~~~~v~~~GRlg~y~Y--~~md~~i~~al~~~~ 385 (397)
T 3hdq_A 344 ELYKKYEALA------------------------------------DAAQDVTFVGRLATYRY--YNMDQVVAQALATFR 385 (397)
T ss_dssp HHHHHHHHHH------------------------------------HHCTTEEECSTTTTTCC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------------------------------------hcCCCEEEcccceEEEe--ccHHHHHHHHHHHHH
Confidence 2222211110 01357888886433234 479999999999999
Q ss_pred HHHH
Q 013390 396 RVVD 399 (444)
Q Consensus 396 ~il~ 399 (444)
.+++
T Consensus 386 ~~~~ 389 (397)
T 3hdq_A 386 RLQG 389 (397)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 8865
No 34
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=98.98 E-value=8.9e-11 Score=101.57 Aligned_cols=97 Identities=12% Similarity=0.121 Sum_probs=72.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhc-cCCCCCeeeeE--EEEEeCCCcc-----c-cCCCCCC-CCCCCCCCCCCEEEeec
Q 013390 303 ANELMPLKDDQVVAKAVSYLSKCI-KDFSTATVMDH--KIRRFPKSLT-----H-FFPGSYK-YMMRGFTSFPNLFMAGD 372 (444)
Q Consensus 303 ~~~~~~~~~ee~~~~~l~~l~~~~-p~~~~~~~~~~--~v~r~~~~~~-----~-~~pg~~~-~~p~~~~~~~~l~laGd 372 (444)
+..+..++++++++.++++|.++| |+. ..+... .+++|....+ . +.||... +.+....|.++|||||+
T Consensus 48 A~~~~~l~~~e~~~~~l~~L~~~~g~~~--~~~~~~~~~~~~W~~dp~~~Ga~s~~~pg~~~~~~~~l~~p~grl~FAGe 125 (181)
T 2e1m_C 48 AARWDSFDDAERYGYALENLQSVHGRRI--EVFYTGAGQTQSWLRDPYACGEAAVYTPHQMTAFHLDVVRPEGPVYFAGE 125 (181)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHCGGG--GGTEEEEEEEEESSSCTTTSSSEECCCTTHHHHHHHHHHSCBTTEEECSG
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhCCCc--HhhccCcceecccCCCCCCCCcccCcCCCchHHHHHHHhCCCCcEEEEEH
Confidence 345667889999999999999999 665 245456 7788965432 2 3455431 22334467889999999
Q ss_pred ccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 373 WITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 373 ~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
+++. |+ ++||||+.||.+||++|++.++.
T Consensus 126 ~ts~-~~-g~~eGAl~SG~raA~~i~~~l~~ 154 (181)
T 2e1m_C 126 HVSL-KH-AWIEGAVETAVRAAIAVNEAPVG 154 (181)
T ss_dssp GGTT-ST-TSHHHHHHHHHHHHHHHHTCCC-
T ss_pred HHcC-Cc-cCHHHHHHHHHHHHHHHHHHhcc
Confidence 9995 77 89999999999999999999875
No 35
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=98.05 E-value=0.00014 Score=69.65 Aligned_cols=206 Identities=9% Similarity=-0.048 Sum_probs=105.5
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-C--eEEecCEEEEccChhhHHHhhhcc-CCCChHHHHH
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGISTLQELIKNS-ILCNREEFLK 238 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g--~~~~ad~VI~a~p~~~~~~ll~~~-~l~~~~~~~~ 238 (444)
.+.+.|.+.+++.|++|+++++|++|..+++ +.+. |.++ | .+++||.||+|+..+.. .|+... .++ .+
T Consensus 151 ~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~-~~~~-v~~~~g~~~~~~a~~VV~A~G~~s~-~l~~~~~g~~-~~---- 222 (369)
T 3dme_A 151 ALMLAYQGDAESDGAQLVFHTPLIAGRVRPE-GGFE-LDFGGAEPMTLSCRVLINAAGLHAP-GLARRIEGIP-RD---- 222 (369)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEECTT-SSEE-EEECTTSCEEEEEEEEEECCGGGHH-HHHHTEETSC-GG----
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEcCC-ceEE-EEECCCceeEEEeCEEEECCCcchH-HHHHHhcCCC-cc----
Confidence 4888899999999999999999999998864 3354 6665 5 48999999999999742 343321 111 00
Q ss_pred hhcCCCccEEEEEEEeccCCCCCCCCceeeccC--CCcccceeeccccccccCCCCCeE-EEEEEecCCCCCCCCHHHHH
Q 013390 239 VLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG--DSLAWTFFDLNKIYDEHKDDSATV-IQADFYHANELMPLKDDQVV 315 (444)
Q Consensus 239 l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~--~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ee~~ 315 (444)
......+.-..++.++.+.... . .++... .+.... +. . . .++.+ +.........+....+++..
T Consensus 223 -~~~~i~p~rG~~~~~~~~~~~~--~-~~~~~p~~~~~~~~-~~-----~--~-~~g~~~iG~t~e~~~~~~~~~~~~~~ 289 (369)
T 3dme_A 223 -SIPPEYLCKGSYFTLAGRAPFS--R-LIYPVPQHAGLGVH-LT-----L--D-LGGQAKFGPDTEWIATEDYTLDPRRA 289 (369)
T ss_dssp -GSCCCEEEEEEEEECSSSCSCS--S-EEEECTTCSSCCCC-EE-----E--C-TTSCEEECCCCEEESSCCCCCCGGGG
T ss_pred -ccceeeecceEEEEECCCCccC--c-eeecCCCCCCceEE-Ee-----C--c-cCCcEEECCCcccccccccccCHHHH
Confidence 0011222223344555432111 1 111110 011010 10 0 0 12222 22111000112223345567
Q ss_pred HHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCC----CCCCCCEEEeecccccCCCcchhhHHHHHHH
Q 013390 316 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG----FTSFPNLFMAGDWITTRHGSWSQERSYVTGL 391 (444)
Q Consensus 316 ~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~----~~~~~~l~laGd~~~~~~~~~~~egAv~SG~ 391 (444)
+.+++.+.+++|.+....+...+.---|.. ..++.....|.+ ....+|+|++..+-+ .++.-|...|+
T Consensus 290 ~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~~---~~~~~~d~~p~i~g~~~~~~~~l~~~~G~~~-----~G~t~ap~~a~ 361 (369)
T 3dme_A 290 DVFYAAVRSYWPALPDGALAPGYTGIRPKI---SGPHEPAADFAIAGPASHGVAGLVNLYGIES-----PGLTASLAIAE 361 (369)
T ss_dssp GGHHHHHHTTCTTCCTTCCEEEEEEEEEES---SCTTSCCCCCEEECHHHHCCTTEEEEECCCT-----THHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCChhhceecceeccccc---cCCCCCcCCeEEecccccCCCCEEEEeCCCC-----chHhccHHHHH
Confidence 788899999999987555554332111111 011221222322 124578988875432 24555667777
Q ss_pred HHHHHH
Q 013390 392 EAANRV 397 (444)
Q Consensus 392 ~aA~~i 397 (444)
.+|+.|
T Consensus 362 ~~a~~i 367 (369)
T 3dme_A 362 ETLARL 367 (369)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777665
No 36
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=98.00 E-value=0.00014 Score=70.11 Aligned_cols=196 Identities=11% Similarity=0.015 Sum_probs=108.1
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhccCCCChHHHHHhhc
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN 241 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~l~~ 241 (444)
..+.+.|.+.+++.|++|+++++|++|..++ +++ .|.++++++.||.||+|++.+.. .+...... .
T Consensus 164 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~--~~~-~v~~~~g~~~a~~vV~A~G~~s~-~l~~~~~~----------~ 229 (382)
T 1ryi_A 164 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDG--EAL-FIKTPSGDVWANHVVVASGVWSG-MFFKQLGL----------N 229 (382)
T ss_dssp HHHHHHHHHHHHHTTCEEETTCCCCEEECSS--SSE-EEEETTEEEEEEEEEECCGGGTH-HHHHHTTC----------C
T ss_pred HHHHHHHHHHHHHCCCEEEcCCcEEEEEEEC--CEE-EEEcCCceEEcCEEEECCChhHH-HHHHhcCC----------C
Confidence 3478888888888999999999999999876 456 57777668999999999998643 23322110 0
Q ss_pred CCCccEEEEEEEeccCCCCCCCCceeeccCCCcccceeeccccccccCCCCCeEEEEEEecCCCCCCCCHHHHHHHHHHH
Q 013390 242 LASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSY 321 (444)
Q Consensus 242 l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~l~~ 321 (444)
+...+.-...+.++.+.. .... .++. ...+ ++ +. .++.++.........+....+++..+.+++.
T Consensus 230 ~~~~~~~g~~~~~~~~~~-~~~~-~~~~---~~~~-~~------p~---~~g~~~vG~~~~~~~~~~~~~~~~~~~l~~~ 294 (382)
T 1ryi_A 230 NAFLPVKGECLSVWNDDI-PLTK-TLYH---DHCY-IV------PR---KSGRLVVGATMKPGDWSETPDLGGLESVMKK 294 (382)
T ss_dssp CCCEEEEEEEEEEECCSS-CCCS-EEEE---TTEE-EE------EC---TTSEEEEECCCEETCCCCSCCHHHHHHHHHH
T ss_pred CceeccceEEEEECCCCC-Cccc-eEEc---CCEE-EE------Ec---CCCeEEEeecccccCCCCCCCHHHHHHHHHH
Confidence 122222233344443321 0011 1111 1111 11 11 1233322211111123333456778899999
Q ss_pred HHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCC--CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 322 LSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF--TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 322 l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~--~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
+.+++|.+....+...+.- . ..++++. .|..- ...+|+|+|+.+.+. ++.-|..+|+.+|+.|+.
T Consensus 295 ~~~~~p~l~~~~~~~~w~g----~-~~~t~d~---~p~ig~~~~~~~l~~~~G~~g~-----G~~~a~~~g~~la~~i~~ 361 (382)
T 1ryi_A 295 AKTMLPAIQNMKVDRFWAG----L-RPGTKDG---KPYIGRHPEDSRILFAAGHFRN-----GILLAPATGALISDLIMN 361 (382)
T ss_dssp HHHHCGGGGGSEEEEEEEE----E-EEECSSS---CCEEEEETTEEEEEEEECCSSC-----TTTTHHHHHHHHHHHHTT
T ss_pred HHHhCCCcCCCceeeEEEE----e-cccCCCC---CcEeccCCCcCCEEEEEcCCcc-----hHHHhHHHHHHHHHHHhC
Confidence 9999998764334332211 1 1112221 12111 125789998875532 345588899999988864
No 37
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=97.96 E-value=0.00082 Score=64.72 Aligned_cols=204 Identities=10% Similarity=0.057 Sum_probs=108.3
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhccCCCChHHHHHhhc
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN 241 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~l~~ 241 (444)
..+.+.+.+.+++.|++|+++++|++|..++ +++++|.+++++++||.||+|+..+... +...... . ..
T Consensus 149 ~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~--~~v~gv~~~~g~i~a~~VV~A~G~~s~~-l~~~~g~--~------~~ 217 (382)
T 1y56_B 149 FEATTAFAVKAKEYGAKLLEYTEVKGFLIEN--NEIKGVKTNKGIIKTGIVVNATNAWANL-INAMAGI--K------TK 217 (382)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEESS--SBEEEEEETTEEEECSEEEECCGGGHHH-HHHHHTC--C------SC
T ss_pred HHHHHHHHHHHHHCCCEEECCceEEEEEEEC--CEEEEEEECCcEEECCEEEECcchhHHH-HHHHcCC--C------cC
Confidence 3477888888889999999999999999876 5677677875689999999999987422 2211000 0 00
Q ss_pred CCCccEEEEEEEeccCCCCCCCCceeeccCCCcccceeeccccccccCCCCCeEEEEE-EecCCCCCCCCHHHHHHHHHH
Q 013390 242 LASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQAD-FYHANELMPLKDDQVVAKAVS 320 (444)
Q Consensus 242 l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ee~~~~~l~ 320 (444)
+...+.-...+.++ +.........+..... . . +| +.+. +++.++... ......+....+++..+.+++
T Consensus 218 ~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~-~-~-~y----~~p~---~~g~~iG~~~~~~~~~~~~~~~~~~~~~l~~ 286 (382)
T 1y56_B 218 IPIEPYKHQAVITQ-PIKRGTINPMVISFKY-G-H-AY----LTQT---FHGGIIGGIGYEIGPTYDLTPTYEFLREVSY 286 (382)
T ss_dssp CCCEEEEEEEEEEC-CCSTTSSCSEEEESTT-T-T-EE----EECC---SSSCCEEECSCCBSSCCCCCCCHHHHHHHHH
T ss_pred cCCCeeEeEEEEEc-cCCcccCCCeEEecCC-C-e-EE----EEEe---CCeEEEecCCCCCCCCCCCCCCHHHHHHHHH
Confidence 11222222223333 2211000011111100 0 1 11 0011 123222211 111112222344567888899
Q ss_pred HHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCC--CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHH
Q 013390 321 YLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF--TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 398 (444)
Q Consensus 321 ~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~--~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il 398 (444)
.+.+++|.+....+... |.. ....+|+. .|..- ...+|+|++..+.+ .++--|..+|+.+|+.|.
T Consensus 287 ~~~~~~p~l~~~~~~~~----~~g-~r~~t~d~---~p~ig~~~~~~~~~~~~G~~g-----~G~~~a~~~g~~la~~i~ 353 (382)
T 1y56_B 287 YFTKIIPALKNLLILRT----WAG-YYAKTPDS---NPAIGRIEELNDYYIAAGFSG-----HGFMMAPAVGEMVAELIT 353 (382)
T ss_dssp HHHHHCGGGGGSEEEEE----EEE-EEEECTTS---CCEEEEESSSBTEEEEECCTT-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcCCCCceEE----EEe-ccccCCCC---CcEeccCCCCCCEEEEEecCc-----chHhhhHHHHHHHHHHHh
Confidence 99999998764344432 211 11112221 12111 23579998875442 356668889999999887
Q ss_pred HH
Q 013390 399 DY 400 (444)
Q Consensus 399 ~~ 400 (444)
..
T Consensus 354 ~~ 355 (382)
T 1y56_B 354 KG 355 (382)
T ss_dssp HS
T ss_pred CC
Confidence 64
No 38
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=97.87 E-value=0.0012 Score=63.99 Aligned_cols=197 Identities=15% Similarity=0.113 Sum_probs=106.3
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH--HHhhhccCCCChHHHHHhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL--QELIKNSILCNREEFLKVL 240 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~--~~ll~~~~l~~~~~~~~l~ 240 (444)
.+.+.|.+.+++.|++|+++++|++|..++ +++++|.++++++.||.||+|+..+.. .+.+...
T Consensus 175 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~--~~~~~v~~~~g~~~a~~vV~a~G~~s~~l~~~~g~~------------ 240 (405)
T 2gag_B 175 HVAWAFARKANEMGVDIIQNCEVTGFIKDG--EKVTGVKTTRGTIHAGKVALAGAGHSSVLAEMAGFE------------ 240 (405)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEESS--SBEEEEEETTCCEEEEEEEECCGGGHHHHHHHHTCC------------
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEEeC--CEEEEEEeCCceEECCEEEECCchhHHHHHHHcCCC------------
Confidence 478888888989999999999999999876 557777777547999999999998642 2222111
Q ss_pred cCCCccEEEEEEEeccCCCCCCCCceeeccCCCcccceeeccccccccCCCCCeE-EEEEEecCCCCCCCCHHHHHHHHH
Q 013390 241 NLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATV-IQADFYHANELMPLKDDQVVAKAV 319 (444)
Q Consensus 241 ~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ee~~~~~l 319 (444)
+...+.....+..+ +.. +.....+... .. . ++ +.+. .++.+ +..............+++..+.++
T Consensus 241 -~~~~~~~~~~~~~~-~~~-~~~~~~~~~~--~~-~-~y----~~p~---~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~ 306 (405)
T 2gag_B 241 -LPIQSHPLQALVSE-LFE-PVHPTVVMSN--HI-H-VY----VSQA---HKGELVMGAGIDSYNGYGQRGAFHVIQEQM 306 (405)
T ss_dssp -CCEEEEEEEEEEEE-EBC-SCCCSEEEET--TT-T-EE----EEEC---TTSEEEEEEEECSSCCCSSCCCTHHHHHHH
T ss_pred -CCccccceeEEEec-CCc-cccCceEEeC--CC-c-EE----EEEc---CCCcEEEEeccCCCCccccCCCHHHHHHHH
Confidence 11111111122222 221 1000111110 00 0 11 0011 23333 333221111222233456678888
Q ss_pred HHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCC-CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHH
Q 013390 320 SYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 398 (444)
Q Consensus 320 ~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~-~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il 398 (444)
+.+.+++|.+....+...+.- + ..++++. .|..- .+.+|+|++..+.+. ++.-|...|+.+|+.|.
T Consensus 307 ~~~~~~~p~l~~~~~~~~w~g-~----~~~t~d~---~p~ig~~~~~~l~~~~G~~g~-----G~~~a~~~g~~la~~i~ 373 (405)
T 2gag_B 307 AAAVELFPIFARAHVLRTWGG-I----VDTTMDA---SPIISKTPIQNLYVNCGWGTG-----GFKGTPGAGFTLAHTIA 373 (405)
T ss_dssp HHHHHHCGGGGGCEECEEEEE-E----EEEETTS---CCEEEECSSBTEEEEECCGGG-----CSTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCccccCCcceEEee-c----cccCCCC---CCEecccCCCCEEEEecCCCc-----hhhHHHHHHHHHHHHHh
Confidence 999999998754344433221 1 1112221 12111 125789988765532 34448889999999987
Q ss_pred HH
Q 013390 399 DY 400 (444)
Q Consensus 399 ~~ 400 (444)
..
T Consensus 374 g~ 375 (405)
T 2gag_B 374 ND 375 (405)
T ss_dssp HT
T ss_pred CC
Confidence 64
No 39
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=97.84 E-value=0.00033 Score=68.97 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHhcCcEEEcCc---eeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhhH
Q 013390 163 KIFEPWMDSMRTRGCEFLDGR---RVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 221 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~---~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~~ 221 (444)
.+++.|.+.+++.|++|++++ +|++|..++ ++|++|.+. |++++||.||+|+..+.-
T Consensus 162 ~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~--~~v~gV~t~~G~~i~Ad~VV~AtG~~s~ 222 (438)
T 3dje_A 162 NALVAAAREAQRMGVKFVTGTPQGRVVTLIFEN--NDVKGAVTADGKIWRAERTFLCAGASAG 222 (438)
T ss_dssp HHHHHHHHHHHHTTCEEEESTTTTCEEEEEEET--TEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred HHHHHHHHHHHhcCCEEEeCCcCceEEEEEecC--CeEEEEEECCCCEEECCEEEECCCCChh
Confidence 488889999999999999999 999999877 678878886 668999999999999753
No 40
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=97.81 E-value=0.0015 Score=62.62 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=48.2
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
..+++.|.+.+++.|++|+++++|++|..++ +++ .|.++++++.||+||+|+..+.
T Consensus 154 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~--~~~-~V~t~~g~i~a~~VV~A~G~~s 209 (381)
T 3nyc_A 154 DALHQGYLRGIRRNQGQVLCNHEALEIRRVD--GAW-EVRCDAGSYRAAVLVNAAGAWC 209 (381)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCCCCEEEEET--TEE-EEECSSEEEEESEEEECCGGGH
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEEeC--CeE-EEEeCCCEEEcCEEEECCChhH
Confidence 3588889999999999999999999999887 444 4777766899999999999875
No 41
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=97.75 E-value=2.7e-05 Score=62.48 Aligned_cols=116 Identities=9% Similarity=-0.005 Sum_probs=54.3
Q ss_pred CeEEecCEEEEccChhhHHHhhhccCCCChHHHHHhhcCCCccEEEEEEEeccCCCCCCCCceeeccCCCcccceeeccc
Q 013390 204 KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNK 283 (444)
Q Consensus 204 g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~l~~l~~~~~~~v~l~~d~~~~~~~~~~~~~g~~~~~~~~~~d~~~ 283 (444)
.++++||+||+|+|+.+++.+...++++ ....+.++++.+....|+.+.|++++|.+.. ..+ |.+.
T Consensus 3 ~~~~~Ad~VIvTvP~~vL~~I~F~P~LP-~~k~~Ai~~l~~g~~~Kv~l~f~~~FW~~~~---~~g----------d~s~ 68 (130)
T 2e1m_B 3 TQTWTGDLAIVTIPFSSLRFVKVTPPFS-YKKRRAVIETHYDQATKVLLEFSRRWWEFTE---ADW----------KREL 68 (130)
T ss_dssp CEEEEESEEEECSCHHHHTTSEEESCCC-HHHHHHHHHCCEECEEEEEEEESSCGGGCCH---HHH----------HHHH
T ss_pred ceEEEcCEEEEcCCHHHHhcCcCCCCCC-HHHHHHHHhCCCcceeEEEEEECCCCCCCCC---ccc----------cccC
Confidence 3568999999999999999887777664 3445788999999999999999999995421 111 1110
Q ss_pred cccccCCCCCeEEEEE-E-ecCCCCCCCCHHHHHHHHHHHHHhhccCCCCCeeeeEE
Q 013390 284 IYDEHKDDSATVIQAD-F-YHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHK 338 (444)
Q Consensus 284 ~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~ 338 (444)
.+. ..+.++... . ..+.+|..+++ |.++.++..|..++|+....+++..+
T Consensus 69 -~~~---~pg~l~~f~~wg~~A~~~~~l~~-~~r~~~~~~l~~~~p~~~~~~~~~~~ 120 (130)
T 2e1m_B 69 -DAI---APGLYDYYQQWGEDDAEAALALP-QSVRNLPTGLLGAHPSVDESRIGEEQ 120 (130)
T ss_dssp -HHH---STTHHHHHHHHCCCSCCCC-------------------------------
T ss_pred -CCC---CCeEEEEecccCHHHHHHhcCCH-HHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 000 012111111 0 02346666766 66889999999999976533454433
No 42
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=97.59 E-value=0.0023 Score=66.78 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
..+++.|.+.+++.|++|+++++|++|..++ ++| .|.+. |+++.||+||+|+..+.
T Consensus 417 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~--~~v-~V~t~~G~~i~Ad~VVlAtG~~s 473 (676)
T 3ps9_A 417 AELTRNVLELAQQQGLQIYYQYQLQNFSRKD--DCW-LLNFAGDQQATHSVVVLANGHQI 473 (676)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEET--TEE-EEEETTSCEEEESEEEECCGGGG
T ss_pred HHHHHHHHHHHHhCCCEEEeCCeeeEEEEeC--CeE-EEEECCCCEEECCEEEECCCcch
Confidence 3488888888889999999999999999987 556 47774 67899999999999874
No 43
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=97.59 E-value=0.0058 Score=58.87 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe---C-CeEEecCEEEEccChhh-HHHhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-KETYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~---~-g~~~~ad~VI~a~p~~~-~~~ll 225 (444)
.+.+.|.+.+++.|++|+++++|++|..++ +++++|.+ + +++++||.||.|...+. +.+.+
T Consensus 103 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~gv~~~~~~~~~~~~a~~vV~A~G~~s~~~~~~ 168 (397)
T 3cgv_A 103 KFDKHLAALAAKAGADVWVKSPALGVIKEN--GKVAGAKIRHNNEIVDVRAKMVIAADGFESEFGRWA 168 (397)
T ss_dssp HHHHHHHHHHHHHTCEEESSCCEEEEEEET--TEEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEECCEEEEEEEeC--CEEEEEEEEECCeEEEEEcCEEEECCCcchHhHHhc
Confidence 367788888888899999999999999886 66766665 2 45899999999999864 33443
No 44
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=97.54 E-value=0.0084 Score=53.82 Aligned_cols=88 Identities=16% Similarity=0.123 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCCCCCCCEEEeecccccCCCcchhhHHH
Q 013390 308 PLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSY 387 (444)
Q Consensus 308 ~~~~ee~~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~~~~~~l~laGd~~~~~~~~~~~egAv 387 (444)
.....+..+.....+......... .+....+++|..+.+...... +...+..++||+|||++. + +++++|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~w~~a~~~~~~~~----~~~~~~~~~v~l~GDa~~---g-~gv~~A~ 313 (336)
T 3kkj_A 243 DASREQVIEHLHGAFAELIDCTMP-APVFSLAHRWLYARPAGAHEW----GALSDADLGIYVCGDWCL---S-GRVEGAW 313 (336)
T ss_dssp TSCHHHHHHHHHHHHHTTCSSCCC-CCSEEEEEEEEEEEESSCCCC----SSEEETTTTEEECCGGGT---T-SSHHHHH
T ss_pred cccchhhhhhhhhhhhhhccCCcC-cchheeccceeecccccccCc----cceeeCCCCEEEEecccC---C-cCHHHHH
Confidence 345566666667777666643332 466667778876544332211 122245689999999985 2 5799999
Q ss_pred HHHHHHHHHHHHHhCCC
Q 013390 388 VTGLEAANRVVDYLGDG 404 (444)
Q Consensus 388 ~SG~~aA~~il~~lg~~ 404 (444)
.||+.||+.|++.|..+
T Consensus 314 ~sG~~aA~~I~~~L~~e 330 (336)
T 3kkj_A 314 LSGQEAARRLLEHLQLE 330 (336)
T ss_dssp HHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999999999743
No 45
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=97.52 E-value=0.0013 Score=64.81 Aligned_cols=61 Identities=26% Similarity=0.365 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEe---------------cCCCCeEEEEEeCCeEE--ecCEEEEccChhhHHHhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIY---------------DEERCCISDVVCGKETY--SAGAVVLAVGISTLQELI 225 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~---------------~~~~g~v~~v~~~g~~~--~ad~VI~a~p~~~~~~ll 225 (444)
.+.+.|.+.+++.|++|+++++|++|.. ++ ++|++|.++++++ .||.||+|+.++.. +++
T Consensus 182 ~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~--~~v~~V~t~~g~i~~~Ad~VV~AtG~~s~-~l~ 258 (448)
T 3axb_A 182 KVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQE--ARASAAVLSDGTRVEVGEKLVVAAGVWSN-RLL 258 (448)
T ss_dssp HHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSC--EEEEEEEETTSCEEEEEEEEEECCGGGHH-HHH
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCC--CceEEEEeCCCEEeecCCEEEECCCcCHH-HHH
Confidence 4888899999999999999999999998 44 5677777774478 99999999999743 344
Q ss_pred h
Q 013390 226 K 226 (444)
Q Consensus 226 ~ 226 (444)
.
T Consensus 259 ~ 259 (448)
T 3axb_A 259 N 259 (448)
T ss_dssp G
T ss_pred H
Confidence 3
No 46
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=97.51 E-value=0.0043 Score=59.70 Aligned_cols=55 Identities=18% Similarity=0.377 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.+.+.+++.|++|+++++|++|..++ +++. |.+++++++||.||+|+..+.
T Consensus 151 ~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~--~~~~-v~~~~g~~~a~~vV~A~G~~~ 205 (389)
T 2gf3_A 151 NCIRAYRELAEARGAKVLTHTRVEDFDISP--DSVK-IETANGSYTADKLIVSMGAWN 205 (389)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEECS--SCEE-EEETTEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHCCCEEEcCcEEEEEEecC--CeEE-EEeCCCEEEeCEEEEecCccH
Confidence 478888888999999999999999999876 3464 677766899999999999875
No 47
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=97.49 E-value=0.0031 Score=65.94 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=47.2
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-Ce-EEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE-TYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~-~~~ad~VI~a~p~~~ 220 (444)
..+++.|.+.+++.|++|+++++|++|..++ ++|. |.++ |+ +++||+||+|+..+.
T Consensus 412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~--~~v~-V~t~~G~~~i~Ad~VVlAtG~~s 469 (689)
T 3pvc_A 412 SDLTHALMMLAQQNGMTCHYQHELQRLKRID--SQWQ-LTFGQSQAAKHHATVILATGHRL 469 (689)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEECS--SSEE-EEEC-CCCCEEESEEEECCGGGT
T ss_pred HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeC--CeEE-EEeCCCcEEEECCEEEECCCcch
Confidence 3488888888989999999999999999987 4464 6665 55 899999999999873
No 48
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=97.39 E-value=0.016 Score=55.41 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccChhh-HHHhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VI~a~p~~~-~~~ll 225 (444)
+-+.|.+.+++.|++++++++|+.+..++ ++++++.. +++ +++||.||-|-..+. +.+.+
T Consensus 104 ~~~~L~~~a~~~G~~~~~~~~v~~~~~~~--~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S~vr~~~ 168 (397)
T 3oz2_A 104 FDKHLAALAAKAGADVWVKSPALGVIKEN--GKVAGAKIRHNNEIVDVRAKMVIAADGFESEFGRWA 168 (397)
T ss_dssp HHHHHHHHHHHHTCEEESSCCEEEEEEET--TEEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCcEEeeeeeeeeeeecc--ceeeeeeecccccceEEEEeEEEeCCccccHHHHHc
Confidence 55667777778899999999999999887 56665543 343 688999999998864 34443
No 49
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=97.39 E-value=0.015 Score=57.33 Aligned_cols=56 Identities=23% Similarity=0.254 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+.+.|++|+++++|++|..++ ++|++|.+ +|+ +++||.||.|.....
T Consensus 101 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~--~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s 162 (453)
T 3atr_A 101 LYNQRVLKEAQDRGVEIWDLTTAMKPIFED--GYVKGAVLFNRRTNEELTVYSKVVVEATGYSR 162 (453)
T ss_dssp HHHHHHHHHHHHTTCEEESSEEEEEEEEET--TEEEEEEEEETTTTEEEEEECSEEEECCGGGC
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCceEEEEcCEEEECcCCch
Confidence 367778888888899999999999999876 56765543 555 789999999999864
No 50
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=97.33 E-value=0.00042 Score=66.63 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=66.4
Q ss_pred hhccCccHHHHHH-HhCCCHHHHHHHHHHHHHhhcCCChhhchHHHHHHHHHHHHHhcCCCcceeeecCCcchhhHHHHH
Q 013390 91 RKYDSITARELFK-QFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWM 169 (444)
Q Consensus 91 ~~~d~~s~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~~~~~~gg~~~~l~~~l~ 169 (444)
+++|++|+.+||+ +.++++..++.+ ..++ .+. ...++|+..++... . ..........+.||+. .|+++|+
T Consensus 257 ~~lD~~S~~~~L~~~~g~s~~~~~~~-~~~~--~~~-~~~~~s~l~~l~~~---~-~~~~~~~~~~i~GG~~-~l~~~l~ 327 (376)
T 2e1m_A 257 RDFDGYSMGRFLREYAEFSDEAVEAI-GTIE--NMT-SRLHLAFFHSFLGR---S-DIDPRATYWEIEGGSR-MLPETLA 327 (376)
T ss_dssp HHHTTCBHHHHHHHTSCCCHHHHHHH-HHHT--TCT-TTTTSBHHHHHHHC---S-CSCTTCCEEEETTCTT-HHHHHHH
T ss_pred HHHhCCCHHHHHhhccCCCHHHHHHH-Hhhc--Ccc-ccchhhHHHHHHHh---h-hhccCCceEEECCcHH-HHHHHHH
Confidence 4579999999999 788999876544 3332 122 22356665544321 0 1111233445679954 5999998
Q ss_pred HHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccCh
Q 013390 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI 218 (444)
Q Consensus 170 ~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~ 218 (444)
+.+ +.+|++|++|++|..+++ | |..+..+.......+|++.+-+
T Consensus 328 ~~l---~~~i~l~~~V~~I~~~~~-g-v~v~~~~~~~~~g~~~~~~~~~ 371 (376)
T 2e1m_A 328 KDL---RDQIVMGQRMVRLEYYDP-G-RDGHHGELTGPGGPAVAIQTVP 371 (376)
T ss_dssp HHG---GGTEECSEEEEEEEECCC-C--------------CCEEEEEEE
T ss_pred Hhc---CCcEEecCeEEEEEECCC-c-eEEEeCCCcCCCCCeeEEEecC
Confidence 866 468999999999999874 4 5433333333456677777643
No 51
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=97.30 E-value=0.028 Score=57.16 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
.++..+.+.+++.|++|+.+++|++|..++ ++|++|.+ .|+ +++||.||+|+.++.
T Consensus 189 ~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~--~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws 250 (571)
T 2rgh_A 189 RLVIDNIKKAAEDGAYLVSKMKAVGFLYEG--DQIVGVKARDLLTDEVIEIKAKLVINTSGPWV 250 (571)
T ss_dssp HHHHHHHHHHHHTTCEEESSEEEEEEEEET--TEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred HHHHHHHHHHHHcCCeEEeccEEEEEEEeC--CEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence 477778888888999999999999999887 56777764 332 689999999999985
No 52
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=97.29 E-value=0.011 Score=59.96 Aligned_cols=57 Identities=30% Similarity=0.313 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC----C--eEEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VI~a~p~~~ 220 (444)
..+...+++.+++.|++|+++++|++|..++ ++|++|.+. | .+++||.||.|+.++.
T Consensus 170 ~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~--g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 170 ARLTLEIMKEAVARGAVALNYMKVESFIYDQ--GKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV 232 (561)
T ss_dssp HHHHHHHHHHHHHTTCEEEESEEEEEEEEET--TEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcC--CeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence 4578888888889999999999999999987 667777652 3 4789999999999975
No 53
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=97.12 E-value=0.2 Score=50.96 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-------C---------eEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K---------ETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-------g---------~~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+++.|++|+++++|++|..+++ |+|++|.+. | .+++||.||.|.....
T Consensus 145 ~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~-g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S 217 (584)
T 2gmh_A 145 HLVSWMGEQAEALGVEVYPGYAAAEILFHED-GSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHG 217 (584)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCEEEEEECTT-SSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTC
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-CCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCc
Confidence 3777888888888999999999999998765 567667654 2 5789999999999864
No 54
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=97.07 E-value=0.02 Score=57.78 Aligned_cols=62 Identities=21% Similarity=0.258 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCC---eEEEEEeCC---eEEecCEEEEccChhh-HHHhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC---CISDVVCGK---ETYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g---~v~~v~~~g---~~~~ad~VI~a~p~~~-~~~ll 225 (444)
.+.+.|.+.+++.|++|+++++|++|+.+++ + +|+....++ .+++||.||.|...+. +.+.+
T Consensus 121 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~-~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S~vR~~l 189 (535)
T 3ihg_A 121 KLEPILLAQARKHGGAIRFGTRLLSFRQHDD-DAGAGVTARLAGPDGEYDLRAGYLVGADGNRSLVRESL 189 (535)
T ss_dssp HHHHHHHHHHHHTTCEEESSCEEEEEEEECG-GGCSEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHT
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEECCC-CccccEEEEEEcCCCeEEEEeCEEEECCCCcchHHHHc
Confidence 4777888888888999999999999998873 1 565333334 6789999999999864 44444
No 55
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=97.02 E-value=0.019 Score=55.86 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-Ce--EEecCEEEEccChhh-HHHhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE--TYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~--~~~ad~VI~a~p~~~-~~~ll 225 (444)
.+.+.|.+.+++.|++|+++++|++|..+++ +.+..+.+. |+ +++||.||.|...+. +.+++
T Consensus 107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~-~~~v~v~~~~g~~~~~~a~~vV~A~G~~s~l~~~~ 172 (421)
T 3nix_A 107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGT-DSVTTIEDINGNKREIEARFIIDASGYGRVIPRMF 172 (421)
T ss_dssp HHHHHHHHHHHHHTCEEECSEEEEEEEEETT-EEEEEEEETTSCEEEEEEEEEEECCGGGCHHHHHT
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC-EEEEEEEcCCCCEEEEEcCEEEECCCCchhhHHhc
Confidence 4677788888888999999999999998864 322334444 65 689999999999864 33443
No 56
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=96.80 E-value=0.035 Score=53.69 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~ll 225 (444)
.|.+.|.+.+++ ++|+++++|++|+.++ ++|+ |.+ +|++++||.||.|...+. +.+.+
T Consensus 128 ~l~~~L~~~~~~--~~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~a~~vV~AdG~~S~vr~~l 187 (407)
T 3rp8_A 128 ELQREMLDYWGR--DSVQFGKRVTRCEEDA--DGVT-VWFTDGSSASGDLLIAADGSHSALRPWV 187 (407)
T ss_dssp HHHHHHHHHHCG--GGEEESCCEEEEEEET--TEEE-EEETTSCEEEESEEEECCCTTCSSHHHH
T ss_pred HHHHHHHHhCCc--CEEEECCEEEEEEecC--CcEE-EEEcCCCEEeeCEEEECCCcChHHHHHh
Confidence 366677776655 8999999999999887 4576 555 478899999999999863 44444
No 57
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=96.57 E-value=0.09 Score=52.64 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe---CC--eEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~---~g--~~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+++.|++|+++++|++|..++ ++|++|.+ +| .+++||.||.|...+.
T Consensus 112 ~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~--~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S 172 (512)
T 3e1t_A 112 RFDDMLLRNSERKGVDVRERHEVIDVLFEG--ERAVGVRYRNTEGVELMAHARFIVDASGNRT 172 (512)
T ss_dssp HHHHHHHHHHHHTTCEEESSCEEEEEEEET--TEEEEEEEECSSSCEEEEEEEEEEECCCTTC
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEEC--CEEEEEEEEeCCCCEEEEEcCEEEECCCcch
Confidence 477788888888999999999999999977 56665554 25 3789999999999864
No 58
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=96.27 E-value=0.19 Score=48.10 Aligned_cols=61 Identities=10% Similarity=-0.000 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccChhh-HHHhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VI~a~p~~~-~~~ll 225 (444)
.+.+.|.+.+.+.|++|+++++|++|..+++ +.+. |.+ +|+ +++||.||.|...+. +.+.+
T Consensus 104 ~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~-~~~~-v~~~~~g~~~~~~a~~vV~AdG~~S~vr~~l 169 (394)
T 1k0i_A 104 EVTRDLMEAREACGATTVYQAAEVRLHDLQG-ERPY-VTFERDGERLRLDCDYIAGCDGFHGISRQSI 169 (394)
T ss_dssp HHHHHHHHHHHHTTCEEESSCEEEEEECTTS-SSCE-EEEEETTEEEEEECSEEEECCCTTCSTGGGS
T ss_pred HHHHHHHHHHHhcCCeEEeceeEEEEEEecC-CceE-EEEecCCcEEEEEeCEEEECCCCCcHHHHhc
Confidence 3667777777778999999999999998642 3354 444 576 789999999999864 33443
No 59
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=96.21 E-value=0.011 Score=58.17 Aligned_cols=58 Identities=17% Similarity=0.302 Sum_probs=49.0
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
...+.+.|.+.+++.|++|+++++|++|..++ +++++|.+. |++++||.||+|+....
T Consensus 133 ~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~--~~v~~V~~~~G~~i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 133 AQSVVDALLTRLKDLGVKIRTNTPVETIEYEN--GQTKAVILQTGEVLETNHVVIAVGGKS 191 (447)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred HHHHHHHHHHHHHHCCCEEEeCcEEEEEEecC--CcEEEEEECCCCEEECCEEEECCCCCc
Confidence 45688999999999999999999999999876 566678776 66699999999998755
No 60
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=96.05 E-value=0.41 Score=47.65 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCe---EEecCEEEEccChhh-HHHhhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE---TYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~---~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
.+.+.|.+.+++.|++|+++++|++|+.+++ +|+ |++ +++ +++||.||.|...+. +.+.+.
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v~-v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg 173 (499)
T 2qa2_A 108 TTESVLEEWALGRGAELLRGHTVRALTDEGD--HVV-VEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAG 173 (499)
T ss_dssp HHHHHHHHHHHHTTCEEEESCEEEEEEECSS--CEE-EEEECSSCEEEEEEEEEEECCCTTCHHHHHTT
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC--EEE-EEEEcCCCcEEEEeCEEEEccCcccHHHHHcC
Confidence 3677777888888999999999999998873 476 444 343 789999999999874 455553
No 61
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=96.04 E-value=0.013 Score=59.19 Aligned_cols=56 Identities=29% Similarity=0.310 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+++.|++|+++++|++|..++ +++++|.++ |+++.||.||+|+..+.
T Consensus 221 ~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~--~~v~gV~l~~G~~i~Ad~VVlA~G~~s 277 (549)
T 3nlc_A 221 TMIEKMRATIIELGGEIRFSTRVDDLHMED--GQITGVTLSNGEEIKSRHVVLAVGHSA 277 (549)
T ss_dssp HHHHHHHHHHHHTTCEEESSCCEEEEEESS--SBEEEEEETTSCEEECSCEEECCCTTC
T ss_pred HHHHHHHHHHHhcCCEEEeCCEEEEEEEeC--CEEEEEEECCCCEEECCEEEECCCCCh
Confidence 477888888888999999999999999877 567778876 67899999999999865
No 62
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=95.99 E-value=0.013 Score=56.01 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
.+++.|.+.+++.|++|+++++|++|..++ +++. |.+++++++||.||+|+.++.
T Consensus 150 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~-v~~~~g~~~a~~vV~a~G~~s 204 (372)
T 2uzz_A 150 LAIKTWIQLAKEAGCAQLFNCPVTAIRHDD--DGVT-IETADGEYQAKKAIVCAGTWV 204 (372)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEECS--SSEE-EEESSCEEEEEEEEECCGGGG
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEEcC--CEEE-EEECCCeEEcCEEEEcCCccH
Confidence 478888888889999999999999999876 4464 667655699999999999875
No 63
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=95.97 E-value=0.018 Score=55.80 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=48.4
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
...+.+.+.+.+++.|++|+++++|++|..++ +++++|.+. |+++.||.||++++..
T Consensus 183 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v~~V~~~dG~~i~aD~Vv~a~G~~ 240 (404)
T 3fg2_P 183 TPEISSYFHDRHSGAGIRMHYGVRATEIAAEG--DRVTGVVLSDGNTLPCDLVVVGVGVI 240 (404)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTSCEEECSEEEECCCEE
T ss_pred CHHHHHHHHHHHHhCCcEEEECCEEEEEEecC--CcEEEEEeCCCCEEEcCEEEECcCCc
Confidence 34577888888999999999999999999876 567777775 7789999999999874
No 64
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=95.96 E-value=0.012 Score=56.72 Aligned_cols=55 Identities=31% Similarity=0.427 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+++.|++|+++++|++|..++ ++|+ |.+++++++||.||+|+..+.
T Consensus 154 ~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~-v~t~~g~i~a~~VV~A~G~~s 208 (397)
T 2oln_A 154 GTLAALFTLAQAAGATLRAGETVTELVPDA--DGVS-VTTDRGTYRAGKVVLACGPYT 208 (397)
T ss_dssp HHHHHHHHHHHHTTCEEEESCCEEEEEEET--TEEE-EEESSCEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHcCCEEECCCEEEEEEEcC--CeEE-EEECCCEEEcCEEEEcCCcCh
Confidence 477888888888999999999999999876 4565 667766899999999999864
No 65
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=95.96 E-value=0.016 Score=61.97 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
.+++.|.+.+++.|++|+++++|++|..++ +++++|.+++++++||+||+|+..+.
T Consensus 152 ~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~--~~v~~V~t~~G~i~Ad~VV~AaG~~s 207 (830)
T 1pj5_A 152 RAVQLLIKRTESAGVTYRGSTTVTGIEQSG--GRVTGVQTADGVIPADIVVSCAGFWG 207 (830)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETTEEEECSEEEECCGGGH
T ss_pred HHHHHHHHHHHHcCCEEECCceEEEEEEeC--CEEEEEEECCcEEECCEEEECCccch
Confidence 488889999999999999999999999876 56777888866899999999999985
No 66
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=95.94 E-value=0.018 Score=56.10 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=48.5
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
...+.+.+.+.+++.|++|++++.|++|..++ ++++.|.+. |+++.||.||++++...
T Consensus 193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v~~v~l~dG~~i~aD~Vv~a~G~~p 251 (415)
T 3lxd_A 193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEGDG--TKVTGVRMQDGSVIPADIVIVGIGIVP 251 (415)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETCCEEEEEESS--SBEEEEEESSSCEEECSEEEECSCCEE
T ss_pred CHHHHHHHHHHHHhCCCEEEECCEEEEEEecC--CcEEEEEeCCCCEEEcCEEEECCCCcc
Confidence 34577788888899999999999999999876 567777775 78899999999998643
No 67
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=95.94 E-value=0.38 Score=47.88 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-Ce---EEecCEEEEccChhh-HHHhhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE---TYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~---~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
.+.+.|.+.+++.|++|+++++|++|+.++ ++|+ |++. ++ +++||.||.|...+. +.+.+.
T Consensus 107 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg 172 (500)
T 2qa1_A 107 VTETHLEQWATGLGADIRRGHEVLSLTDDG--AGVT-VEVRGPEGKHTLRAAYLVGCDGGRSSVRKAAG 172 (500)
T ss_dssp HHHHHHHHHHHHTTCEEEETCEEEEEEEET--TEEE-EEEEETTEEEEEEESEEEECCCTTCHHHHHTT
T ss_pred HHHHHHHHHHHHCCCEEECCcEEEEEEEcC--CeEE-EEEEcCCCCEEEEeCEEEECCCcchHHHHHcC
Confidence 366777788888899999999999999887 4576 5443 42 789999999999864 445553
No 68
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=95.80 E-value=0.023 Score=55.39 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=50.0
Q ss_pred eecCCcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 155 ~~~gg~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
++... ...+.+.|.+.+++.|++|+++++|++|..++ +.+. |.+++++++||.||+|+....
T Consensus 126 ~~~~~-~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~--~~~~-V~~~~g~i~ad~VIlAtG~~S 187 (417)
T 3v76_A 126 FCDHS-AKDIIRMLMAEMKEAGVQLRLETSIGEVERTA--SGFR-VTTSAGTVDAASLVVASGGKS 187 (417)
T ss_dssp EESSC-HHHHHHHHHHHHHHHTCEEECSCCEEEEEEET--TEEE-EEETTEEEEESEEEECCCCSS
T ss_pred eeCCC-HHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC--CEEE-EEECCcEEEeeEEEECCCCcc
Confidence 44333 34588999999999999999999999999877 4454 777756899999999999764
No 69
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=95.72 E-value=0.094 Score=53.27 Aligned_cols=61 Identities=21% Similarity=0.187 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe---CC-eEEecCEEEEccChhh-HHHhhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~---~g-~~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
.+.+.|.+.+++.|++|+++++|++|+.+++ +|+ |++ +| ++++||.||.|...+. +.+.+.
T Consensus 149 ~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~--~v~-v~~~~~~G~~~~~a~~vV~ADG~~S~vR~~lG 214 (570)
T 3fmw_A 149 RTEALLAEHAREAGAEIPRGHEVTRLRQDAE--AVE-VTVAGPSGPYPVRARYGVGCDGGRSTVRRLAA 214 (570)
T ss_dssp HHHHHHHHHHHHHTEECCBSCEEEECCBCSS--CEE-EEEEETTEEEEEEESEEEECSCSSCHHHHHTT
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC--eEE-EEEEeCCCcEEEEeCEEEEcCCCCchHHHHcC
Confidence 4677788888888999999999999998873 465 554 36 5899999999999864 445553
No 70
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=95.49 E-value=0.028 Score=55.41 Aligned_cols=57 Identities=12% Similarity=0.203 Sum_probs=47.6
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
...+.+.+.+.+++.|++|+++++|++|..++ +++..+.++|+++.+|.||+|++..
T Consensus 190 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~v~~v~~~g~~i~~D~vv~a~G~~ 246 (452)
T 2cdu_A 190 DKEFTDILAKDYEAHGVNLVLGSKVAAFEEVD--DEIITKTLDGKEIKSDIAILCIGFR 246 (452)
T ss_dssp CHHHHHHHHHHHHHTTCEEEESSCEEEEEEET--TEEEEEETTSCEEEESEEEECCCEE
T ss_pred hhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCC--CeEEEEEeCCCEEECCEEEECcCCC
Confidence 34577788888999999999999999998654 5676666778889999999999864
No 71
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=95.48 E-value=0.022 Score=57.16 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC--Ce--EEecC-EEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~--g~--~~~ad-~VI~a~p~~~ 220 (444)
.+.+.|.+.+++.|++|+++++|++|..+++ |+|++|.+. ++ ++.|| .||+|+....
T Consensus 203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~-g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDT-GRVVGIVAKQYGKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HHHHHHHHHHHHTTCEEECSEEEEEEEECTT-CCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHcCCEEEecCEeEEEEECCC-CcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence 5889999999999999999999999999843 678887663 43 58996 9999998754
No 72
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=95.33 E-value=0.041 Score=56.01 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~---~g~--~~~ad~VI~a~p~~ 219 (444)
..+.+.|.+.+++.|++|+++++|++|..+++ |+|++|.+ +|+ ++.||.||+|+...
T Consensus 255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~ 316 (571)
T 1y0p_A 255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK-GTVKGILVKGMYKGYYWVKADAVILATGGF 316 (571)
T ss_dssp HHHHHHHHHHHHHTTCEEESSEEEEEEEECTT-SCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCC-CeEEEEEEEeCCCcEEEEECCeEEEeCCCc
Confidence 45888899999899999999999999998753 56776654 465 68999999999874
No 73
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=95.06 E-value=0.061 Score=53.22 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=46.5
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
...+.+.+.+.+++.|++|+++++|++|..++ ++++.+..+|+++.+|.||+|++..
T Consensus 201 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v~v~~~~g~~i~aD~Vv~a~G~~ 257 (472)
T 3iwa_A 201 SKSLSQMLRHDLEKNDVVVHTGEKVVRLEGEN--GKVARVITDKRTLDADLVILAAGVS 257 (472)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEESS--SBEEEEEESSCEEECSEEEECSCEE
T ss_pred CHHHHHHHHHHHHhcCCEEEeCCEEEEEEccC--CeEEEEEeCCCEEEcCEEEECCCCC
Confidence 44577888888999999999999999999865 5576334457889999999999874
No 74
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=95.04 E-value=0.046 Score=52.93 Aligned_cols=57 Identities=14% Similarity=0.150 Sum_probs=47.2
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEec----CCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYD----EERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~----~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
...+.+.+.+.+++.|++|+++++|++|..+ + +++. |.+++++++||+||+|+....
T Consensus 108 ~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~--~~~~-v~~~~g~i~ad~VVlAtG~~s 168 (401)
T 2gqf_A 108 AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEK--VRFV-LQVNSTQWQCKNLIVATGGLS 168 (401)
T ss_dssp THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSS--CCEE-EEETTEEEEESEEEECCCCSS
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCC--CeEE-EEECCCEEECCEEEECCCCcc
Confidence 3458889999999999999999999999976 4 4454 677766899999999998755
No 75
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=94.95 E-value=0.046 Score=55.55 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~---~g~--~~~ad~VI~a~p~~~ 220 (444)
..+.+.|.+.+++.|++|+++++|++|..+++ |+|++|.+ +|+ ++.||.||+|+....
T Consensus 250 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s 312 (566)
T 1qo8_A 250 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD-HSVVGAVVHGKHTGYYMIGAKSVVLATGGYG 312 (566)
T ss_dssp HHHHHHHHHHHHHTTCCEECSEEEEEEEECTT-SBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEECCC-CcEEEEEEEeCCCcEEEEEcCEEEEecCCcc
Confidence 44888899999899999999999999998763 46776654 455 689999999998754
No 76
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=94.91 E-value=0.06 Score=54.78 Aligned_cols=57 Identities=23% Similarity=0.242 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~---~g~--~~~ad~VI~a~p~~ 219 (444)
..+.+.|.+.+++.|++|+++++|++|..+++ |+|++|.+ +|+ ++.||.||+|+...
T Consensus 255 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~-g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~ 316 (572)
T 1d4d_A 255 AHVAQVLWDNAVKRGTDIRLNSRVVRILEDAS-GKVTGVLVKGEYTGYYVIKADAVVIAAGGF 316 (572)
T ss_dssp HHHHHHHHHHHHHTTCEEESSEEEEEEEEC---CCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred HHHHHHHHHHHHHcCCeEEecCEEEEEEECCC-CeEEEEEEEeCCCcEEEEEcCEEEEeCCCC
Confidence 35888899999999999999999999987653 45776654 354 68999999999864
No 77
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=94.85 E-value=3 Score=42.72 Aligned_cols=64 Identities=23% Similarity=0.249 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHhcCc--EEEcCceeeEEEecCC--CCeEEEE-Ee-----CC--eEEecCEEEEccChhh-HHHhhh
Q 013390 163 KIFEPWMDSMRTRGC--EFLDGRRVTDFIYDEE--RCCISDV-VC-----GK--ETYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~--~v~~~~~V~~I~~~~~--~g~v~~v-~~-----~g--~~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
.+.+.|.+.+++.|+ +|+++++|++|+.+++ +..|+.. .. +| ++++||.||.|...+. +.+.+.
T Consensus 142 ~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg 218 (639)
T 2dkh_A 142 RVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSNVRRAIG 218 (639)
T ss_dssp HHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcchHHHHHhC
Confidence 477778888888887 9999999999998752 1135422 22 35 5789999999999864 455554
No 78
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=94.71 E-value=0.059 Score=53.03 Aligned_cols=56 Identities=11% Similarity=0.096 Sum_probs=46.3
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
...+.+.+.+.+++.|++|+++++|++|..++ +++ .|.++++++.||.||+|++..
T Consensus 188 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v-~v~~~~g~i~aD~Vv~A~G~~ 243 (452)
T 3oc4_A 188 DKEMVAEVQKSLEKQAVIFHFEETVLGIEETA--NGI-VLETSEQEISCDSGIFALNLH 243 (452)
T ss_dssp CHHHHHHHHHHHHTTTEEEEETCCEEEEEECS--SCE-EEEESSCEEEESEEEECSCCB
T ss_pred CHHHHHHHHHHHHHcCCEEEeCCEEEEEEccC--CeE-EEEECCCEEEeCEEEECcCCC
Confidence 44577888888999999999999999999765 457 477775589999999999864
No 79
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=94.63 E-value=0.066 Score=47.42 Aligned_cols=54 Identities=15% Similarity=0.049 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++. |++|+ +++|++|..++ +++++|.++ |++++||.||+|+...
T Consensus 69 ~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~--~~v~~v~~~~g~~i~a~~VV~A~G~~ 124 (232)
T 2cul_A 69 AFHARAKYLLEGLRPLHLF-QATATGLLLEG--NRVVGVRTWEGPPARGEKVVLAVGSF 124 (232)
T ss_dssp HHHHHHHHHHHTCTTEEEE-ECCEEEEEEET--TEEEEEEETTSCCEECSEEEECCTTC
T ss_pred HHHHHHHHHHHcCCCcEEE-EeEEEEEEEeC--CEEEEEEECCCCEEECCEEEECCCCC
Confidence 4667777888886 88998 68999999876 567667775 6689999999999984
No 80
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=94.56 E-value=0.061 Score=45.33 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++++++ +|++|..++ +.+. |.++++++++|.||+|+...
T Consensus 56 ~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~--~~~~-v~~~~g~i~ad~vI~A~G~~ 109 (180)
T 2ywl_A 56 EELLRRLEAHARRYGAEVRPG-VVKGVRDMG--GVFE-VETEEGVEKAERLLLCTHKD 109 (180)
T ss_dssp HHHHHHHHHHHHHTTCEEEEC-CCCEEEECS--SSEE-EECSSCEEEEEEEEECCTTC
T ss_pred HHHHHHHHHHHHHcCCEEEeC-EEEEEEEcC--CEEE-EEECCCEEEECEEEECCCCC
Confidence 347788888888999999999 999999876 3354 66653389999999999875
No 81
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=94.44 E-value=0.093 Score=51.27 Aligned_cols=56 Identities=20% Similarity=0.357 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEe--cCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIY--DEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~--~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|+++++|++|.. ++ ++++.|.+. |+++.+|.||++++..
T Consensus 191 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--~~v~~v~~~~G~~i~~D~Vv~a~G~~ 249 (431)
T 1q1r_A 191 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQ--QKVTAVLCEDGTRLPADLVIAGIGLI 249 (431)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTT--CCEEEEEETTSCEEECSEEEECCCEE
T ss_pred HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCC--CcEEEEEeCCCCEEEcCEEEECCCCC
Confidence 44667788888899999999999999987 44 457667765 7789999999999864
No 82
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=94.44 E-value=0.36 Score=45.33 Aligned_cols=187 Identities=13% Similarity=0.043 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHHhhhccCCCChHHHHHhhcC
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL 242 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~l~~l 242 (444)
.+++.|.+.+++.|++|+. ++|++|...+ + ++||.||+|+..+.. .++...
T Consensus 143 ~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~--~-----------~~a~~VV~A~G~~s~-~l~~~~-------------- 193 (351)
T 3g3e_A 143 NYLQWLTERLTERGVKFFQ-RKVESFEEVA--R-----------EGADVIVNCTGVWAG-ALQRDP-------------- 193 (351)
T ss_dssp HHHHHHHHHHHHTTCEEEE-CCCCCHHHHH--H-----------TTCSEEEECCGGGGG-GTSCCT--------------
T ss_pred HHHHHHHHHHHHCCCEEEE-EEeCCHHHhh--c-----------CCCCEEEECCCcChH-hhcCCC--------------
Confidence 4888999999999999998 9998886432 1 469999999998764 233221
Q ss_pred CCccEEEEEEEeccCCCCCCCCceeecc---CCCcccceeeccccccccCCCCCeEEEEEEecCCCCCCCCHHHHHHHHH
Q 013390 243 ASIDVVSVKLWFDKKVTVPNVSNACSGF---GDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAV 319 (444)
Q Consensus 243 ~~~~~~~v~l~~d~~~~~~~~~~~~~g~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~l 319 (444)
...++-..++.++.+ .... ..+... +... . +| +.+. .++.++...... ..+....+++..+.++
T Consensus 194 ~l~p~rg~~~~~~~~-~~~~--~~~~~~~~~~~~~-~-~y----~~p~---~~~~~iGg~~~~-~~~~~~~~~~~~~~l~ 260 (351)
T 3g3e_A 194 LLQPGRGQIMKVDAP-WMKH--FILTHDPERGIYN-S-PY----IIPG---TQTVTLGGIFQL-GNWSELNNIQDHNTIW 260 (351)
T ss_dssp TCEEEEEEEEEEECT-TCCS--EEEECCTTTCTTC-S-CE----EEEC---SSCEEEECCCEE-TCCCCSCCHHHHHHHH
T ss_pred ceeecCCcEEEEeCC-Ccce--EEEeccccCCCCc-e-eE----EEeC---CCcEEEeeeeec-CCCCCCCCHHHHHHHH
Confidence 122222333444433 2111 111000 0000 0 11 0011 122233222111 1222234556788899
Q ss_pred HHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCC-CCCC--CCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHH
Q 013390 320 SYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY-MMRG--FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANR 396 (444)
Q Consensus 320 ~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~-~p~~--~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~ 396 (444)
+.+.+++|.+....+...+.--.| .+|+ ... .|.. ....+|+|++..+.+ .++--|...|+.+|+.
T Consensus 261 ~~~~~~~P~l~~~~i~~~w~G~r~-----~t~D-~p~~~~~ig~~~~~~~~~~~~G~~g-----~G~~~ap~~g~~la~l 329 (351)
T 3g3e_A 261 EGCCRLEPTLKNARIIGERTGFRP-----VRPQ-IRLEREQLRTGPSNTEVIHNYGHGG-----YGLTIHWGCALEAAKL 329 (351)
T ss_dssp HHHHHHCGGGGGCEEEEEEEEEEE-----ECSS-CEEEEEEECCSSSCEEEEEEECCTT-----CHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccCCcEeeeeEeeCC-----CCCC-ccceeeeccCCCCCCeEEEEeCCCc-----chHhhhHHHHHHHHHH
Confidence 999999998764445443321111 1121 100 0000 112578988875432 3566688899999999
Q ss_pred HHHHhC
Q 013390 397 VVDYLG 402 (444)
Q Consensus 397 il~~lg 402 (444)
|.+.+.
T Consensus 330 i~~~~~ 335 (351)
T 3g3e_A 330 FGRILE 335 (351)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988775
No 83
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=94.35 E-value=0.084 Score=52.66 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=46.0
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
...+.+.+.+.+++.|++|+++++|++|..++ +++. |.++ |+++.+|.||+|++...
T Consensus 222 d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~--~~v~-v~~~~g~~i~aD~Vv~a~G~~p 279 (499)
T 1xdi_A 222 DADAALVLEESFAERGVRLFKNARAASVTRTG--AGVL-VTMTDGRTVEGSHALMTIGSVP 279 (499)
T ss_dssp SHHHHHHHHHHHHHTTCEEETTCCEEEEEECS--SSEE-EEETTSCEEEESEEEECCCEEE
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC--CEEE-EEECCCcEEEcCEEEECCCCCc
Confidence 33477888888999999999999999999766 4464 5554 77899999999998753
No 84
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=94.32 E-value=0.085 Score=52.66 Aligned_cols=56 Identities=18% Similarity=0.146 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
..+...+.+.+++.|++|+++++|++|..++ + +++|.+ +|+ +++||.||.|+.++.
T Consensus 149 ~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~--~-~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s 210 (501)
T 2qcu_A 149 ARLVLANAQMVVRKGGEVLTRTRATSARREN--G-LWIVEAEDIDTGKKYSWQARGLVNATGPWV 210 (501)
T ss_dssp HHHHHHHHHHHHHTTCEEECSEEEEEEEEET--T-EEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--C-EEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence 3478888888889999999999999999875 3 555665 354 789999999999985
No 85
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=94.27 E-value=0.092 Score=50.34 Aligned_cols=56 Identities=16% Similarity=0.129 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (444)
..+.+.+.+.+++.|++|+++++|++|..++ +.+. |.+ +|+++++|.||+|++...
T Consensus 187 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~~~-v~~~~g~~i~~d~vv~a~G~~p 243 (384)
T 2v3a_A 187 PAAAKAVQAGLEGLGVRFHLGPVLASLKKAG--EGLE-AHLSDGEVIPCDLVVSAVGLRP 243 (384)
T ss_dssp HHHHHHHHHHHHTTTCEEEESCCEEEEEEET--TEEE-EEETTSCEEEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecC--CEEE-EEECCCCEEECCEEEECcCCCc
Confidence 3467888888989999999999999999765 4454 555 477899999999998643
No 86
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=94.23 E-value=0.033 Score=53.99 Aligned_cols=55 Identities=16% Similarity=0.159 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHhcCcEEEcCceee---------EEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVT---------DFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~---------~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+++.|++|+++++|+ +|..++ +++ .|.++++++.||.||+|+..+.
T Consensus 173 ~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~--~~v-~v~~~~g~i~a~~VV~A~G~~s 236 (405)
T 3c4n_A 173 SLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTN--THQ-IVVHETRQIRAGVIIVAAGAAG 236 (405)
T ss_dssp HHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC----------CBCCEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeC--CeE-EEEECCcEEECCEEEECCCccH
Confidence 488888888888999999999999 888766 456 5767766899999999999874
No 87
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=94.17 E-value=0.085 Score=52.41 Aligned_cols=55 Identities=25% Similarity=0.300 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|+++++|++|+.++ +++. |.+. |+++.+|.||+|++..
T Consensus 232 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~--~~v~-v~~~~g~~i~aD~Vi~A~G~~ 287 (484)
T 3o0h_A 232 YDLRQLLNDAMVAKGISIIYEATVSQVQSTE--NCYN-VVLTNGQTICADRVMLATGRV 287 (484)
T ss_dssp HHHHHHHHHHHHHHTCEEESSCCEEEEEECS--SSEE-EEETTSCEEEESEEEECCCEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEeeC--CEEE-EEECCCcEEEcCEEEEeeCCC
Confidence 4477788888889999999999999999876 4464 5664 7789999999999864
No 88
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=94.05 E-value=0.082 Score=51.26 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (444)
..+.+.+.+.+++.|++|++++.|++|..++ ++..|.+ +|+++.||.||++++...
T Consensus 185 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~---~~~~v~~~dg~~i~aD~Vv~a~G~~p 241 (410)
T 3ef6_A 185 RRIGAWLRGLLTELGVQVELGTGVVGFSGEG---QLEQVMASDGRSFVADSALICVGAEP 241 (410)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEEECSS---SCCEEEETTSCEEECSEEEECSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEeccC---cEEEEEECCCCEEEcCEEEEeeCCee
Confidence 3466777888889999999999999998654 3545666 478899999999998753
No 89
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=94.03 E-value=0.11 Score=52.23 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeE--EEEEeC-Ce-EEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCI--SDVVCG-KE-TYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v--~~v~~~-g~-~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|+++++|++|..+++ +++ ..|.++ |+ ++.||.||+|++..
T Consensus 255 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~-~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~ 315 (523)
T 1mo9_A 255 NETRAYVLDRMKEQGMEIISGSNVTRIEEDAN-GRVQAVVAMTPNGEMRIETDFVFLGLGEQ 315 (523)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCEEEEEEECTT-SBEEEEEEEETTEEEEEECSCEEECCCCE
T ss_pred HHHHHHHHHHHHhCCcEEEECCEEEEEEEcCC-CceEEEEEEECCCcEEEEcCEEEECcCCc
Confidence 44677888889999999999999999997653 443 235665 55 79999999999854
No 90
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=93.94 E-value=0.11 Score=51.62 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|++++.|++|..++ +++. |.+ +|+++.||.||++++..
T Consensus 226 ~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~--~~~~-v~l~dG~~i~aD~Vv~a~G~~ 281 (493)
T 1m6i_A 226 EYLSNWTMEKVRREGVKVMPNAIVQSVGVSS--GKLL-IKLKDGRKVETDHIVAAVGLE 281 (493)
T ss_dssp HHHHHHHHHHHHTTTCEEECSCCEEEEEEET--TEEE-EEETTSCEEEESEEEECCCEE
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecC--CeEE-EEECCCCEEECCEEEECCCCC
Confidence 3466777888889999999999999998765 4453 555 47889999999999864
No 91
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=93.86 E-value=0.13 Score=50.64 Aligned_cols=55 Identities=16% Similarity=0.185 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|+++++|++|..++ +.+ .|.++++++.+|.||+|++..
T Consensus 216 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~~~-~v~~~~~~i~aD~Vv~a~G~~ 270 (467)
T 1zk7_A 216 PAIGEAVTAAFRAEGIEVLEHTQASQVAHMD--GEF-VLTTTHGELRADKLLVATGRT 270 (467)
T ss_dssp HHHHHHHHHHHHHTTCEEETTCCEEEEEEET--TEE-EEEETTEEEEESEEEECSCEE
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEE-EEEECCcEEEcCEEEECCCCC
Confidence 3477888888999999999999999998765 433 467777889999999999874
No 92
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=93.80 E-value=0.14 Score=47.41 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-----C--eEEecCEEEEccCh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----K--ETYSAGAVVLAVGI 218 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-----g--~~~~ad~VI~a~p~ 218 (444)
.+.+.+.+.+++.|++|+++++|++|..++ +++.+|.+. | +++.+|.||++++.
T Consensus 185 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~ 245 (320)
T 1trb_A 185 ILIKRLMDKVENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDVAGLFVAIGH 245 (320)
T ss_dssp HHHHHHHHHHHTSSEEEECSCEEEEEEECS--SSEEEEEEECCTTCCCCEEEECSEEEECSCE
T ss_pred HHHHHHHHhcccCCeEEEcCceeEEEEcCC--CceEEEEEEeccCCCceEEEEcCEEEEEeCC
Confidence 366677777888999999999999999765 456555542 3 57899999999875
No 93
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=93.65 E-value=0.12 Score=51.41 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|+++++|++|..+++ +.+. |.+. |+++.+|.||+|++..
T Consensus 231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~~-v~~~~G~~i~~D~vv~a~G~~ 287 (490)
T 1fec_A 231 SELRKQLTEQLRANGINVRTHENPAKVTKNAD-GTRH-VVFESGAEADYDVVMLAIGRV 287 (490)
T ss_dssp HHHHHHHHHHHHHTTEEEEETCCEEEEEECTT-SCEE-EEETTSCEEEESEEEECSCEE
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CEEE-EEECCCcEEEcCEEEEccCCC
Confidence 44777888889999999999999999997653 3343 5554 6789999999999864
No 94
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=93.62 E-value=0.13 Score=51.18 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|+++++|++|..+++ +.+ .|.+. |+++++|.||+|++..
T Consensus 235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~-~v~~~~G~~i~~D~vv~a~G~~ 291 (495)
T 2wpf_A 235 ETIREEVTKQLTANGIEIMTNENPAKVSLNTD-GSK-HVTFESGKTLDVDVVMMAIGRI 291 (495)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEECTT-SCE-EEEETTSCEEEESEEEECSCEE
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-ceE-EEEECCCcEEEcCEEEECCCCc
Confidence 44677888889999999999999999997653 334 35554 7789999999999864
No 95
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=93.60 E-value=0.12 Score=48.57 Aligned_cols=56 Identities=16% Similarity=0.032 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.+.+.+++.|++++++++|++|..++ +++.+|.++++++++|+||+|+....
T Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~v~~~~g~~~~d~vV~AtG~~~ 132 (357)
T 4a9w_A 77 EVLAYLAQYEQKYALPVLRPIRVQRVSHFG--ERLRVVARDGRQWLARAVISATGTWG 132 (357)
T ss_dssp HHHHHHHHHHHHTTCCEECSCCEEEEEEET--TEEEEEETTSCEEEEEEEEECCCSGG
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEECC--CcEEEEEeCCCEEEeCEEEECCCCCC
Confidence 467777777888899999999999999887 44543677755899999999999744
No 96
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=93.60 E-value=0.14 Score=51.66 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+++. |++|+++ +|++|..+++ |.++.|.+. |++++||.||.|+..+.
T Consensus 195 ~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~-g~~~~v~~~~G~~i~ad~vI~A~G~~S 252 (550)
T 2e4g_A 195 LVADFLRRFATEKLGVRHVED-RVEHVQRDAN-GNIESVRTATGRVFDADLFVDCSGFRG 252 (550)
T ss_dssp HHHHHHHHHHHHHSCCEEEEC-CEEEEEECTT-SCEEEEEETTSCEEECSEEEECCGGGC
T ss_pred HHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCC-CCEEEEEECCCCEEECCEEEECCCCch
Confidence 4778888888888 9999999 9999998654 556567775 67899999999999864
No 97
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=93.45 E-value=0.12 Score=51.39 Aligned_cols=56 Identities=20% Similarity=0.356 Sum_probs=45.5
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
...+.+.+.+.+++.|++|++++.|++|.. + +++..|.++|+++.+|.||+|++..
T Consensus 235 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~--~~v~~v~~~g~~i~~D~Vi~a~G~~ 290 (490)
T 2bc0_A 235 DRDLTDLMAKNMEEHGIQLAFGETVKEVAG-N--GKVEKIITDKNEYDVDMVILAVGFR 290 (490)
T ss_dssp CHHHHHHHHHHHHTTTCEEEETCCEEEEEC-S--SSCCEEEESSCEEECSEEEECCCEE
T ss_pred HHHHHHHHHHHHHhCCeEEEeCCEEEEEEc-C--CcEEEEEECCcEEECCEEEECCCCC
Confidence 344677788888999999999999999986 3 4465566788889999999999864
No 98
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=93.45 E-value=0.16 Score=50.27 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=44.3
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-C-eEEecCEEEEccCh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K-ETYSAGAVVLAVGI 218 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g-~~~~ad~VI~a~p~ 218 (444)
...+.+.+.+.+++.|++|+++++|++|..+++ +++..|.++ | +++.+|.||+|++.
T Consensus 225 d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~~v~~~~G~~~i~~D~vv~a~G~ 283 (479)
T 2hqm_A 225 DECIQNTITDHYVKEGINVHKLSKIVKVEKNVE-TDKLKIHMNDSKSIDDVDELIWTIGR 283 (479)
T ss_dssp CHHHHHHHHHHHHHHTCEEECSCCEEEEEECC--CCCEEEEETTSCEEEEESEEEECSCE
T ss_pred CHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCC-CcEEEEEECCCcEEEEcCEEEECCCC
Confidence 344777788889999999999999999987653 322335654 7 78999999999985
No 99
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=93.39 E-value=0.15 Score=50.14 Aligned_cols=56 Identities=23% Similarity=0.253 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (444)
..+.+.+.+.+++.|++|+++++|++|..++ +++. +.+ +|+++.+|.||+|++...
T Consensus 208 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~--~~v~-v~~~~g~~i~~D~vv~A~G~~p 264 (455)
T 2yqu_A 208 LEVSRAAERVFKKQGLTIRTGVRVTAVVPEA--KGAR-VELEGGEVLEADRVLVAVGRRP 264 (455)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEEEEET--TEEE-EEETTSCEEEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEeC--CEEE-EEECCCeEEEcCEEEECcCCCc
Confidence 4477788888889999999999999999876 4454 555 477899999999998643
No 100
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=93.28 E-value=0.17 Score=49.59 Aligned_cols=57 Identities=11% Similarity=0.188 Sum_probs=44.9
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
...+.+.+.+.+++.|++|+++++|++|..+++ +.+. |.+. |+++.+|.||+|++..
T Consensus 207 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~-v~~~~g~~i~~D~vv~a~G~~ 264 (450)
T 1ges_A 207 DPMISETLVEVMNAEGPQLHTNAIPKAVVKNTD-GSLT-LELEDGRSETVDCLIWAIGRE 264 (450)
T ss_dssp CHHHHHHHHHHHHHHSCEEECSCCEEEEEECTT-SCEE-EEETTSCEEEESEEEECSCEE
T ss_pred hHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-cEEE-EEECCCcEEEcCEEEECCCCC
Confidence 344677888889899999999999999997653 3343 5554 7789999999999753
No 101
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=93.24 E-value=0.19 Score=50.14 Aligned_cols=56 Identities=20% Similarity=0.134 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+++.|++|+.+ +|++|..+++ +.++.|.+. |++++||.||.|...+.
T Consensus 174 ~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~-~~~~~v~~~~g~~~~ad~vV~A~G~~S 230 (511)
T 2weu_A 174 EVARYLSEYAIARGVRHVVD-DVQHVGQDER-GWISGVHTKQHGEISGDLFVDCTGFRG 230 (511)
T ss_dssp HHHHHHHHHHHHTTCEEEEC-CEEEEEECTT-SCEEEEEESSSCEEECSEEEECCGGGC
T ss_pred HHHHHHHHHHHHCCCEEEEC-eEeEEEEcCC-CCEEEEEECCCCEEEcCEEEECCCcch
Confidence 47778888888889999999 9999998654 555567765 66899999999999864
No 102
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=93.23 E-value=0.17 Score=49.94 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=45.3
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEE-eC-CeEEecCEEEEccChh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV-CG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~-~~-g~~~~ad~VI~a~p~~ 219 (444)
...+.+.+.+.+++.|++|+++++|++|..+++ +.+ .|. ++ |+ +.+|.||+|++..
T Consensus 210 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~-~v~~~~~g~-i~aD~Vv~a~G~~ 267 (463)
T 4dna_A 210 DQDMRRGLHAAMEEKGIRILCEDIIQSVSADAD-GRR-VATTMKHGE-IVADQVMLALGRM 267 (463)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEECTT-SCE-EEEESSSCE-EEESEEEECSCEE
T ss_pred CHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCC-CEE-EEEEcCCCe-EEeCEEEEeeCcc
Confidence 344778888889999999999999999998764 434 466 65 66 9999999999864
No 103
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=93.21 E-value=2 Score=40.27 Aligned_cols=45 Identities=24% Similarity=0.280 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~ 221 (444)
..+...|.+.+++.|++|+. ++|++|.. . . + .||.||+|+..+.-
T Consensus 142 ~~~~~~l~~~~~~~G~~i~~-~~v~~l~~----~-~--------~-~a~~VV~A~G~~s~ 186 (363)
T 1c0p_A 142 PKYCQYLARELQKLGATFER-RTVTSLEQ----A-F--------D-GADLVVNATGLGAK 186 (363)
T ss_dssp HHHHHHHHHHHHHTTCEEEE-CCCSBGGG----T-C--------S-SCSEEEECCGGGGG
T ss_pred HHHHHHHHHHHHHCCCEEEE-EEcccHhh----c-C--------c-CCCEEEECCCcchh
Confidence 35888999999999999998 99998853 2 1 1 79999999998863
No 104
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=93.20 E-value=0.14 Score=51.06 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=42.7
Q ss_pred HHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEe---CC-----eEEecCEEEEccChhhHHHhh
Q 013390 167 PWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---GK-----ETYSAGAVVLAVGISTLQELI 225 (444)
Q Consensus 167 ~l~~~l~~~G-~~v~~~~~V~~I~~~~~~g~v~~v~~---~g-----~~~~ad~VI~a~p~~~~~~ll 225 (444)
.+.+.+++.| ++|++++.|++|..+++++++++|.+ +| .++.|+.||+|.......+|+
T Consensus 226 ~~l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~~VIlaaG~~~s~~lL 293 (504)
T 1n4w_A 226 TYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELL 293 (504)
T ss_dssp THHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeCEEEEccCCCCCHHHH
Confidence 3334444565 89999999999999853247888876 35 357899999999987555543
No 105
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=93.13 E-value=0.17 Score=51.56 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
..+.+.|.+.+++.|++|+++++|++|..+++ |+|++|.+ +|+ ++.|+.||+|+....
T Consensus 143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~-g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~ 206 (588)
T 2wdq_A 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTALCIETGEVVYFKARATVLATGGAG 206 (588)
T ss_dssp HHHHHHHHHHHHHTTCEEEETEEEEEEEECTT-SCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence 45888899988889999999999999998633 66777664 354 589999999998754
No 106
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=93.13 E-value=0.2 Score=51.68 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe---C-Ce--EEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-KE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~---~-g~--~~~ad~VI~a~p~~~ 220 (444)
..+...|.+.+.+.|++|+.+++|.+|..++ |+|++|.+ . |+ .+.|+.||+|+....
T Consensus 158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 220 (660)
T 2bs2_A 158 HTMLFAVANECLKLGVSIQDRKEAIALIHQD--GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG 220 (660)
T ss_dssp HHHHHHHHHHHHHHTCEEECSEEEEEEEEET--TEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred HHHHHHHHHHHHhCCCEEEECcEEEEEEecC--CEEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence 3588889988888899999999999999865 67777654 3 54 489999999998754
No 107
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=93.10 E-value=0.23 Score=49.18 Aligned_cols=55 Identities=24% Similarity=0.284 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|+++++|++|..+ ++++.+.++++++.+|.||+|++..
T Consensus 227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~---~~v~~v~~~~~~i~~D~vi~a~G~~ 281 (480)
T 3cgb_A 227 GDMAEYIYKEADKHHIEILTNENVKAFKGN---ERVEAVETDKGTYKADLVLVSVGVK 281 (480)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEES---SBEEEEEETTEEEECSEEEECSCEE
T ss_pred HHHHHHHHHHHHHcCcEEEcCCEEEEEEcC---CcEEEEEECCCEEEcCEEEECcCCC
Confidence 447778888899999999999999999864 3466677787789999999999864
No 108
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=93.04 E-value=0.2 Score=45.71 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEe----------CC-----eEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----------GK-----ETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~-~G~~v~~~~~V~~I~~~~~~g~v~~v~~----------~g-----~~~~ad~VI~a~p~~ 219 (444)
.+...+.+.+.+ .|++|++++.|++|..++ +++.+|.+ ++ .+++||.||+|+...
T Consensus 120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~--~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~ 190 (284)
T 1rp0_A 120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--NRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHD 190 (284)
T ss_dssp HHHHHHHHHHHTSTTEEEEETEEEEEEEEET--TEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSS
T ss_pred HHHHHHHHHHHhcCCCEEEcCcEEEEEEecC--CeEEEEEEeccccccccCccccCceEEEECCEEEECCCCc
Confidence 366677777755 699999999999999876 56766654 22 578999999999864
No 109
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=93.01 E-value=0.16 Score=51.99 Aligned_cols=57 Identities=11% Similarity=0.132 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
..+...|.+.+.+.|++|+.+++|.+|..++ |+|++|.+ +|+ ++.|++||+|+....
T Consensus 155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 217 (621)
T 2h88_A 155 HSLLHTLYGRSLRYDTSYFVEYFALDLLMEN--GECRGVIALCIEDGTIHRFRAKNTVIATGGYG 217 (621)
T ss_dssp HHHHHHHHHHHTTSCCEEEETEEEEEEEEET--TEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred HHHHHHHHHHHHhCCCEEEEceEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 3588889888888899999999999999875 67777764 354 689999999998754
No 110
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=92.99 E-value=0.12 Score=49.59 Aligned_cols=62 Identities=18% Similarity=0.152 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEE-EEEeC-CeEEecCEEEEccChhh-HHHhhh
Q 013390 163 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCIS-DVVCG-KETYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 163 ~l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~-~v~~~-g~~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
.+.+.|.+.+++. |++|+++++|++|+.++ ++|+ .|.+. |++++||.||.|...+. +.+.+.
T Consensus 108 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~v~g~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg 173 (399)
T 2x3n_A 108 SLRRLVLEKIDGEATVEMLFETRIEAVQRDE--RHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLL 173 (399)
T ss_dssp HHHHHHHHHHTTCTTEEEECSCCEEEEEECT--TSCEEEEEETTSCEEEEEEEEECCCTTCHHHHHTS
T ss_pred HHHHHHHHHhhhcCCcEEEcCCEEEEEEEcC--CceEEEEEECCCCEEECCEEEECCCCChHHHHHhC
Confidence 4778888888887 89999999999999877 3462 36664 77899999999999864 445543
No 111
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=92.72 E-value=0.25 Score=49.24 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeE-EecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKET-YSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~-~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|++++.|++|..+++ +.+. |.+ +|++ +.+|.||+|++..
T Consensus 217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~-~~~~-v~~~~g~~~~~~D~vi~a~G~~ 274 (500)
T 1onf_A 217 ESVINVLENDMKKNNINIVTFADVVEIKKVSD-KNLS-IHLSDGRIYEHFDHVIYCVGRS 274 (500)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEESST-TCEE-EEETTSCEEEEESEEEECCCBC
T ss_pred hhhHHHHHHHHHhCCCEEEECCEEEEEEEcCC-ceEE-EEECCCcEEEECCEEEECCCCC
Confidence 44777888889999999999999999987653 3343 555 4766 8999999999864
No 112
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=92.52 E-value=0.21 Score=47.28 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
+.+.+.+.+++.|++|+++++|.+|..++ +.+. |.++++++.+|+||+|+....
T Consensus 90 ~~~~l~~~~~~~gv~i~~~~~v~~i~~~~--~~~~-v~~~~g~~~~d~vVlAtG~~~ 143 (369)
T 3d1c_A 90 YAEYLQVVANHYELNIFENTVVTNISADD--AYYT-IATTTETYHADYIFVATGDYN 143 (369)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEECS--SSEE-EEESSCCEEEEEEEECCCSTT
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEECC--CeEE-EEeCCCEEEeCEEEECCCCCC
Confidence 55666677778899999999999999876 3354 666655789999999999753
No 113
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=92.40 E-value=0.3 Score=48.14 Aligned_cols=55 Identities=18% Similarity=0.137 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCe-EEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE-TYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~-~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|+++++|++|..++ +++. |.+ +|+ ++.+|.||+|++..
T Consensus 207 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~~~-v~~~~G~~~i~~D~vv~a~G~~ 263 (463)
T 2r9z_A 207 PLLSATLAENMHAQGIETHLEFAVAALERDA--QGTT-LVAQDGTRLEGFDSVIWAVGRA 263 (463)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCCEEEEEEET--TEEE-EEETTCCEEEEESEEEECSCEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC--CeEE-EEEeCCcEEEEcCEEEECCCCC
Confidence 4467778888899999999999999999765 3344 555 477 79999999999753
No 114
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=92.40 E-value=0.18 Score=49.35 Aligned_cols=55 Identities=25% Similarity=0.405 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|+++++|++|..++ +++.|.++++++++|.||+|++..
T Consensus 191 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~---~v~~v~~~~~~i~~d~vi~a~G~~ 245 (447)
T 1nhp_A 191 KEFTDVLTEEMEANNITIATGETVERYEGDG---RVQKVVTDKNAYDADLVVVAVGVR 245 (447)
T ss_dssp HHHHHHHHHHHHTTTEEEEESCCEEEEECSS---BCCEEEESSCEEECSEEEECSCEE
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEccC---cEEEEEECCCEEECCEEEECcCCC
Confidence 4477788888889999999999999998653 354466777789999999999864
No 115
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=92.38 E-value=0.3 Score=48.23 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=44.4
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCC---eEEecCEEEEccChh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK---ETYSAGAVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g---~~~~ad~VI~a~p~~ 219 (444)
...+.+.+.+.+++.|++|+++++|++|..++ +++..+..++ +++.+|.||+|++..
T Consensus 220 ~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~--~~~~v~~~~~~g~~~~~~D~vi~a~G~~ 279 (476)
T 3lad_A 220 DEQVAKEAQKILTKQGLKILLGARVTGTEVKN--KQVTVKFVDAEGEKSQAFDKLIVAVGRR 279 (476)
T ss_dssp CHHHHHHHHHHHHHTTEEEEETCEEEEEEECS--SCEEEEEESSSEEEEEEESEEEECSCEE
T ss_pred CHHHHHHHHHHHHhCCCEEEECCEEEEEEEcC--CEEEEEEEeCCCcEEEECCEEEEeeCCc
Confidence 34477788888999999999999999999876 4454333333 578999999999864
No 116
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=92.11 E-value=0.24 Score=49.45 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=42.0
Q ss_pred HHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEe---CC-----eEEecCEEEEccChhhHHHhh
Q 013390 167 PWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---GK-----ETYSAGAVVLAVGISTLQELI 225 (444)
Q Consensus 167 ~l~~~l~~~G-~~v~~~~~V~~I~~~~~~g~v~~v~~---~g-----~~~~ad~VI~a~p~~~~~~ll 225 (444)
.+...+++.| ++|++++.|++|..+++++++++|.+ +| .++.|+.||+|.......+|+
T Consensus 231 ~~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~~sp~lL 298 (507)
T 1coy_A 231 TYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLL 298 (507)
T ss_dssp THHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeCEEEEccCccCCHHHH
Confidence 3333334454 89999999999999864126878875 35 257899999999987655543
No 117
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=92.09 E-value=0.31 Score=49.00 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+++.|++++.+ .|++|..+++ |.++.|.++ |++++||.||.|...+.
T Consensus 166 ~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~-g~~~~v~~~~g~~i~ad~vV~A~G~~s 222 (538)
T 2aqj_A 166 LVADFLKRWAVERGVNRVVD-EVVDVRLNNR-GYISNLLTKEGRTLEADLFIDCSGMRG 222 (538)
T ss_dssp HHHHHHHHHHHHTTCEEEEC-CEEEEEECTT-SCEEEEEETTSCEECCSEEEECCGGGC
T ss_pred HHHHHHHHHHHHCCCEEEEe-eEeEEEEcCC-CcEEEEEECCCcEEEeCEEEECCCCch
Confidence 47778888888889999999 8999998654 555557765 66899999999999864
No 118
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=92.06 E-value=0.31 Score=49.29 Aligned_cols=57 Identities=14% Similarity=0.288 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEec------------------CCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYD------------------EERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~------------------~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|++++.|++|..+ .+ ++++.+..+|+++.+|.||+|++..
T Consensus 192 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~g~~i~~D~vi~a~G~~ 266 (565)
T 3ntd_A 192 REMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIK-GHLSLTLSNGELLETDLLIMAIGVR 266 (565)
T ss_dssp HHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTT-CEEEEEETTSCEEEESEEEECSCEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCC-CcEEEEEcCCCEEEcCEEEECcCCc
Confidence 446777888888999999999999999873 22 5565333457889999999999863
No 119
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=92.05 E-value=0.26 Score=50.22 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~-~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.+.+.+++ .|++| +++.|++|..++ ++|++|.+. |.++.||.||+|+....
T Consensus 124 ~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~--g~V~GV~t~dG~~i~AdaVVLATG~~s 180 (637)
T 2zxi_A 124 RYREYMKKVCENQENLYI-KQEEVVDIIVKN--NQVVGVRTNLGVEYKTKAVVVTTGTFL 180 (637)
T ss_dssp HHHHHHHHHHHTCTTEEE-EESCEEEEEESS--SBEEEEEETTSCEEECSEEEECCTTCB
T ss_pred HHHHHHHHHHHhCCCCEE-EEeEEEEEEecC--CEEEEEEECCCcEEEeCEEEEccCCCc
Confidence 467788888877 48999 688999999876 568778876 77899999999999753
No 120
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=91.88 E-value=0.39 Score=47.30 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--C--Ce--EEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G--KE--TYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~--g~--~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|++++.|++|..++ +++. |.+ + |+ ++.+|.||+|++..
T Consensus 210 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~-v~~~~~~~g~~~~i~~D~vv~a~G~~ 270 (464)
T 2eq6_A 210 PETAALLRRALEKEGIRVRTKTKAVGYEKKK--DGLH-VRLEPAEGGEGEEVVVDKVLVAVGRK 270 (464)
T ss_dssp HHHHHHHHHHHHHTTCEEECSEEEEEEEEET--TEEE-EEEEETTCCSCEEEEESEEEECSCEE
T ss_pred HHHHHHHHHHHHhcCCEEEcCCEEEEEEEeC--CEEE-EEEeecCCCceeEEEcCEEEECCCcc
Confidence 4467778888889999999999999999776 4454 443 4 65 78999999999753
No 121
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=91.77 E-value=0.29 Score=46.15 Aligned_cols=54 Identities=9% Similarity=0.027 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe---CC--eEEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~---~g--~~~~ad~VI~a~p~~ 219 (444)
+.+.+.+.+++.|++|+++++|++|..++ +++..|.+ +| +++.+|.||++++..
T Consensus 204 ~~~~l~~~~~~~gv~i~~~~~v~~i~~~~--~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~ 262 (360)
T 3ab1_A 204 TAHEVERARANGTIDVYLETEVASIEESN--GVLTRVHLRSSDGSKWTVEADRLLILIGFK 262 (360)
T ss_dssp HHHSSHHHHHHTSEEEESSEEEEEEEEET--TEEEEEEEEETTCCEEEEECSEEEECCCBC
T ss_pred HHHHHHHHhhcCceEEEcCcCHHHhccCC--CceEEEEEEecCCCeEEEeCCEEEECCCCC
Confidence 56667777778899999999999999875 55655554 45 578999999998853
No 122
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=91.76 E-value=0.31 Score=45.25 Aligned_cols=51 Identities=10% Similarity=0.038 Sum_probs=38.6
Q ss_pred HHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEeC------CeEEecCEEEEccCh
Q 013390 166 EPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG------KETYSAGAVVLAVGI 218 (444)
Q Consensus 166 ~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~~------g~~~~ad~VI~a~p~ 218 (444)
+.+.+.+.+. |++|++++.|.+|..++ +++..|.+. ++++.+|.||++++.
T Consensus 212 ~~~~~~l~~~~gv~i~~~~~v~~i~~~~--~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 269 (338)
T 3itj_A 212 TIMQKRAEKNEKIEILYNTVALEAKGDG--KLLNALRIKNTKKNEETDLPVSGLFYAIGH 269 (338)
T ss_dssp HHHHHHHHHCTTEEEECSEEEEEEEESS--SSEEEEEEEETTTTEEEEEECSEEEECSCE
T ss_pred HHHHHHHHhcCCeEEeecceeEEEEccc--CcEEEEEEEECCCCceEEEEeCEEEEEeCC
Confidence 4555666565 99999999999999876 446555542 257899999999886
No 123
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=91.75 E-value=0.26 Score=50.41 Aligned_cols=55 Identities=20% Similarity=0.158 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~-~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.+.+.+++ .|++| +++.|++|..++ ++|++|.+. |.++.||.||+|+....
T Consensus 125 ~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~--g~V~GV~t~dG~~I~Ad~VVLATGt~s 181 (651)
T 3ces_A 125 LYRQAVRTALENQPNLMI-FQQAVEDLIVEN--DRVVGAVTQMGLKFRAKAVVLTVGTFL 181 (651)
T ss_dssp HHHHHHHHHHHTCTTEEE-EECCEEEEEESS--SBEEEEEETTSEEEEEEEEEECCSTTT
T ss_pred HHHHHHHHHHHhCCCCEE-EEEEEEEEEecC--CEEEEEEECCCCEEECCEEEEcCCCCc
Confidence 366778888877 58999 678999999876 568778875 77899999999999754
No 124
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=91.69 E-value=0.42 Score=47.02 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=42.5
Q ss_pred hhhHHHHHHHH-HhcCcEEEcCceeeEEEecCCCCeEEEEEe---CC--eEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSM-RTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l-~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~---~g--~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+ ++.|++|+++++|++|..++ +++. +.+ +| +++.+|.||+|++..
T Consensus 215 ~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~--~~~~-v~~~~~~g~~~~i~~D~vv~a~G~~ 275 (468)
T 2qae_A 215 EDVTNALVGALAKNEKMKFMTSTKVVGGTNNG--DSVS-LEVEGKNGKRETVTCEALLVSVGRR 275 (468)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCEEEEEEECS--SSEE-EEEECC---EEEEEESEEEECSCEE
T ss_pred HHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcC--CeEE-EEEEcCCCceEEEECCEEEECCCcc
Confidence 44677888888 89999999999999999765 3354 443 45 578999999999864
No 125
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=91.56 E-value=0.36 Score=44.61 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccCh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI 218 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~ 218 (444)
.+.+.+.+.+++.|+++++++.|.+|..+++ +.+. |.++++++.+|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~-v~~~~g~~~~d~vVlAtG~ 121 (332)
T 3lzw_A 68 ELINNLKEQMAKFDQTICLEQAVESVEKQAD-GVFK-LVTNEETHYSKTVIITAGN 121 (332)
T ss_dssp HHHHHHHHHHTTSCCEEECSCCEEEEEECTT-SCEE-EEESSEEEEEEEEEECCTT
T ss_pred HHHHHHHHHHHHhCCcEEccCEEEEEEECCC-CcEE-EEECCCEEEeCEEEECCCC
Confidence 4777788888888999999999999998764 3444 6777555999999999987
No 126
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=91.37 E-value=0.36 Score=49.13 Aligned_cols=56 Identities=21% Similarity=0.165 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--CC--eEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~g--~~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+++.|++|+.+++|++|..++ +.++.|.+ +| .+++||.||.|.....
T Consensus 129 ~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~--g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S 188 (591)
T 3i3l_A 129 EFDKLLLDEARSRGITVHEETPVTDVDLSD--PDRVVLTVRRGGESVTVESDFVIDAGGSGG 188 (591)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCEEEEECCS--TTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence 477778888888999999999999999874 33444655 45 5789999999999864
No 127
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=91.33 E-value=0.53 Score=47.38 Aligned_cols=80 Identities=13% Similarity=0.095 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCCC-CCCCEEEeecccccCCCcchhhHHHHHHHHH
Q 013390 315 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWSQERSYVTGLEA 393 (444)
Q Consensus 315 ~~~~l~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~~-~~~~l~laGd~~~~~~~~~~~egAv~SG~~a 393 (444)
+.+.+..+.+..|++...+-+-+-+- ...+.|.-.+ ......+ .++|||-|||.. ||. +++-+|..+|.++
T Consensus 463 l~e~~~~~~~~~~g~~~~~~~l~g~e-~~~ssp~ri~----~~~~~~~~~~~gly~~Gega--G~a-~gi~~Aa~~G~~~ 534 (549)
T 3nlc_A 463 IREAIPAFDRKIKGFASEDGLLTGVE-TRTSSPVCIK----RGKDFQSVNLKGFYPAGEGA--GYA-GGILSAGIDGIKV 534 (549)
T ss_dssp HHHHHHHHHTTSTTTTCTTCEEEEEE-CCSSCSEECC----CTTTTSCTTCBTEEECHHHH--TSC-CSHHHHHHHHHHH
T ss_pred HHHHHHHhhccCcCCCCCCcEEEEEe-eccCCceeEE----ECCCceECCcCCEEEccccC--Chh-hHHHHHHHHHHHH
Confidence 44556677777888764332222221 1122111011 1123344 689999999987 677 7899999999999
Q ss_pred HHHHHHHhC
Q 013390 394 ANRVVDYLG 402 (444)
Q Consensus 394 A~~il~~lg 402 (444)
|+.|+..+.
T Consensus 535 a~~i~~~~~ 543 (549)
T 3nlc_A 535 AEAVARDIV 543 (549)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998874
No 128
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=91.32 E-value=0.53 Score=46.23 Aligned_cols=56 Identities=14% Similarity=0.244 Sum_probs=43.8
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--CC--eEEecCEEEEccChh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~g--~~~~ad~VI~a~p~~ 219 (444)
...+.+.+.+.+++.|++|++++.|++|..++ +++. +.+ +| +++.+|.||++++..
T Consensus 211 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~~~-v~~~~~g~~~~~~~D~vv~a~G~~ 270 (464)
T 2a8x_A 211 DADVSKEIEKQFKKLGVTILTATKVESIADGG--SQVT-VTVTKDGVAQELKAEKVLQAIGFA 270 (464)
T ss_dssp CHHHHHHHHHHHHHHTCEEECSCEEEEEEECS--SCEE-EEEESSSCEEEEEESEEEECSCEE
T ss_pred CHHHHHHHHHHHHHcCCEEEeCcEEEEEEEcC--CeEE-EEEEcCCceEEEEcCEEEECCCCC
Confidence 34466778888899999999999999998765 3454 443 45 578999999999763
No 129
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=91.24 E-value=0.37 Score=49.25 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G-~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
..+...|.+.+.+.| ++|+++++|.+|..++ ++|++|.+ +|+ ++.|+.||+|+....
T Consensus 134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s 197 (602)
T 1kf6_A 134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 197 (602)
T ss_dssp HHHHHHHHHHHTTCTTEEEEETEEEEEEEEET--TEEEEEEEEETTTTEEEEEECSCEEECCCCCG
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCCCc
Confidence 358888888888888 9999999999999876 66766643 365 689999999998754
No 130
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=91.20 E-value=0.35 Score=47.80 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--CCeEEecCEEEEccChhh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKETYSAGAVVLAVGIST 220 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~g~~~~ad~VI~a~p~~~ 220 (444)
..+.+.|.+.+++.|++|+.+++| +|..++ +++.+|.+ +++++.||.||+|+....
T Consensus 119 ~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~--~~v~Gv~v~~~~g~~~a~~VVlAtGg~~ 176 (472)
T 2e5v_A 119 REIFNFLLKLAREEGIPIIEDRLV-EIRVKD--GKVTGFVTEKRGLVEDVDKLVLATGGYS 176 (472)
T ss_dssp HHHHHHHHHHHHHTTCCEECCCEE-EEEEET--TEEEEEEETTTEEECCCSEEEECCCCCG
T ss_pred HHHHHHHHHHHHhCCCEEEECcEE-EEEEeC--CEEEEEEEEeCCCeEEeeeEEECCCCCc
Confidence 347788888887889999999999 998876 66777665 345678999999998754
No 131
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=91.11 E-value=0.3 Score=48.32 Aligned_cols=56 Identities=20% Similarity=0.225 Sum_probs=43.9
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-C----CeEEecCEEEEccChh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G----KETYSAGAVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~----g~~~~ad~VI~a~p~~ 219 (444)
...+.+.+.+.+++.|++|++++.|.+|..++ +.+. |.+ + |+++.+|.||++++..
T Consensus 225 ~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~-v~~~~~~~~g~~~~~D~vv~a~G~~ 285 (482)
T 1ojt_A 225 DRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKE--DGVY-VTFEGANAPKEPQRYDAVLVAAGRA 285 (482)
T ss_dssp CHHHHHHHHHHHGGGEEEEECSCEEEEEEEET--TEEE-EEEESSSCCSSCEEESCEEECCCEE
T ss_pred CHHHHHHHHHHHHhcCCEEEECCEEEEEEEcC--CeEE-EEEeccCCCceEEEcCEEEECcCCC
Confidence 34467788888999999999999999999765 3343 443 4 5678999999999864
No 132
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=90.97 E-value=0.47 Score=43.78 Aligned_cols=51 Identities=18% Similarity=0.352 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccCh
Q 013390 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGI 218 (444)
Q Consensus 166 ~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~ 218 (444)
..+.+.+.+.|++|+++++|.+|..++ +++.+|.+ +|+ ++.+|.||++++.
T Consensus 194 ~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 250 (319)
T 3cty_A 194 NAYVQEIKKRNIPYIMNAQVTEIVGDG--KKVTGVKYKDRTTGEEKLIETDGVFIYVGL 250 (319)
T ss_dssp HHHHHHHHHTTCCEECSEEEEEEEESS--SSEEEEEEEETTTCCEEEECCSEEEECCCE
T ss_pred HHHHHHHhcCCcEEEcCCeEEEEecCC--ceEEEEEEEEcCCCceEEEecCEEEEeeCC
Confidence 445666778899999999999998765 44544543 353 6899999998864
No 133
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=90.92 E-value=0.52 Score=47.22 Aligned_cols=56 Identities=13% Similarity=0.190 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~-~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+++ .|++|+.+ .|++|..+++ +.++.|.+. |++++||.||.|...+.
T Consensus 176 ~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~-g~~~~v~~~~g~~i~ad~vV~AdG~~S 233 (526)
T 2pyx_A 176 KFSQLLTEHCTQKLGVTHIRD-HVSQIINNQH-GDIEKLITKQNGEISGQLFIDCTGAKS 233 (526)
T ss_dssp HHHHHHHHHHHHTSCCEEEEC-CEEEEEECTT-SCEEEEEESSSCEEECSEEEECSGGGC
T ss_pred HHHHHHHHHHHhcCCCEEEEe-EEEEEEecCC-CcEEEEEECCCCEEEcCEEEECCCcch
Confidence 467778888888 89999999 5999998754 545456664 66799999999999864
No 134
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=90.76 E-value=0.4 Score=47.46 Aligned_cols=56 Identities=20% Similarity=0.174 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CC-----eEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-----ETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g-----~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|++++.|.+|..+++ +.+. |.+ ++ .++.+|.||++++..
T Consensus 227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~-v~~~~~~~~~~~~~~~D~vi~a~G~~ 288 (483)
T 3dgh_A 227 QQMAELVAASMEERGIPFLRKTVPLSVEKQDD-GKLL-VKYKNVETGEESEDVYDTVLWAIGRK 288 (483)
T ss_dssp HHHHHHHHHHHHHTTCCEEETEEEEEEEECTT-SCEE-EEEEETTTCCEEEEEESEEEECSCEE
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CcEE-EEEecCCCCceeEEEcCEEEECcccc
Confidence 44677888889999999999999999998654 4454 443 22 268999999999764
No 135
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=90.70 E-value=0.46 Score=46.58 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=43.7
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--C--CeEEecCEEEEccChh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G--KETYSAGAVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~--g~~~~ad~VI~a~p~~ 219 (444)
...+.+.+.+.+++.|++|++++.|++|..++ +++. +.+ + ++++.+|.||+|++..
T Consensus 210 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~~~-v~~~~~g~~~~~~~D~vv~a~G~~ 269 (455)
T 1ebd_A 210 EKQMAAIIKKRLKKKGVEVVTNALAKGAEERE--DGVT-VTYEANGETKTIDADYVLVTVGRR 269 (455)
T ss_dssp CHHHHHHHHHHHHHTTCEEEESEEEEEEEEET--TEEE-EEEEETTEEEEEEESEEEECSCEE
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC--CeEE-EEEEeCCceeEEEcCEEEECcCCC
Confidence 34467778888899999999999999999765 4454 443 2 4578999999999864
No 136
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=90.66 E-value=0.49 Score=46.65 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=44.2
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe------CCeEEecCEEEEccChh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC------GKETYSAGAVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~------~g~~~~ad~VI~a~p~~ 219 (444)
...+.+.+.+.+++.|++|+++++|++|..+++ +.+. +.+ +++++.+|.||+|++..
T Consensus 219 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~-v~~~~~~~~~~~~i~~D~vv~a~G~~ 281 (474)
T 1zmd_A 219 DMEISKNFQRILQKQGFKFKLNTKVTGATKKSD-GKID-VSIEAASGGKAEVITCDVLLVCIGRR 281 (474)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSEEEEEEEECTT-SCEE-EEEEETTSCCCEEEEESEEEECSCEE
T ss_pred CHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCC-ceEE-EEEEecCCCCceEEEcCEEEECcCCC
Confidence 344677888889999999999999999997663 3243 442 35689999999999864
No 137
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=90.48 E-value=0.49 Score=43.32 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=36.8
Q ss_pred HHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccCh
Q 013390 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGI 218 (444)
Q Consensus 169 ~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~---~g~--~~~ad~VI~a~p~ 218 (444)
.+.+++.|++|++++.|.+|..++ +++..|.+ +|+ ++.+|.||++++.
T Consensus 190 ~~~~~~~gv~~~~~~~v~~i~~~~--~~~~~v~~~~~~g~~~~~~~D~vv~a~G~ 242 (315)
T 3r9u_A 190 EKVKKNEKIELITSASVDEVYGDK--MGVAGVKVKLKDGSIRDLNVPGIFTFVGL 242 (315)
T ss_dssp HHHHHCTTEEEECSCEEEEEEEET--TEEEEEEEECTTSCEEEECCSCEEECSCE
T ss_pred HHHHhcCCeEEEeCcEEEEEEcCC--CcEEEEEEEcCCCCeEEeecCeEEEEEcC
Confidence 344467899999999999998776 55655554 354 7889999999885
No 138
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=90.28 E-value=0.63 Score=46.09 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=43.8
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC----C--eEEecCEEEEccChh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VI~a~p~~ 219 (444)
...+.+.+.+.+++.|++|+++++|.+|..++ +.+. +.+. | +++.+|.||+|++..
T Consensus 238 d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~--~~~~-v~~~~~~~g~~~~i~~D~Vi~a~G~~ 299 (491)
T 3urh_A 238 DGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSG--DGAK-VTFEPVKGGEATTLDAEVVLIATGRK 299 (491)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSEEEEEEEEET--TEEE-EEEEETTSCCCEEEEESEEEECCCCE
T ss_pred CHHHHHHHHHHHHhCCCEEEECCeEEEEEEeC--CEEE-EEEEecCCCceEEEEcCEEEEeeCCc
Confidence 34477788888999999999999999999876 4454 3332 4 578999999999864
No 139
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=90.26 E-value=0.61 Score=45.00 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=41.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|+++++|++|. + +. |.+ +|+++.+|.||++++..
T Consensus 187 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~--~--~~---v~~~~g~~i~~D~vi~a~G~~ 238 (408)
T 2gqw_A 187 ATLADFVARYHAAQGVDLRFERSVTGSV--D--GV---VLLDDGTRIAADMVVVGIGVL 238 (408)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEE--T--TE---EEETTSCEEECSEEEECSCEE
T ss_pred HHHHHHHHHHHHHcCcEEEeCCEEEEEE--C--CE---EEECCCCEEEcCEEEECcCCC
Confidence 4467778888999999999999999998 3 42 344 57789999999999864
No 140
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=90.26 E-value=0.55 Score=46.31 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEe--cCCCCeEEEEEe------CCeEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIY--DEERCCISDVVC------GKETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~--~~~~g~v~~v~~------~g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|+++++|++|.. ++ +.+. |.+ +++++.+|.||+|++..
T Consensus 224 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--~~~~-v~~~~~~~g~~~~~~~D~vv~a~G~~ 286 (478)
T 1v59_A 224 GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDK--NVVE-IVVEDTKTNKQENLEAEVLLVAVGRR 286 (478)
T ss_dssp HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTT--TEEE-EEEEETTTTEEEEEEESEEEECSCEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCC--CeEE-EEEEEcCCCCceEEECCEEEECCCCC
Confidence 44777888889999999999999999987 33 3343 443 24578999999999864
No 141
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=89.92 E-value=0.88 Score=44.85 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=44.1
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCC-eEEEEEeC----C----eEEecCEEEEccChh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC-CISDVVCG----K----ETYSAGAVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g-~v~~v~~~----g----~~~~ad~VI~a~p~~ 219 (444)
...+.+.+.+.+++.|++|++++.|++|+.+++ + ++. |.+. | +++.+|.||++++..
T Consensus 227 d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-~~~~~-v~~~~~~~g~~~g~~~~~D~vi~a~G~~ 292 (478)
T 3dk9_A 227 DSMISTNCTEELENAGVEVLKFSQVKEVKKTLS-GLEVS-MVTAVPGRLPVMTMIPDVDCLLWAIGRV 292 (478)
T ss_dssp CHHHHHHHHHHHHHTTCEEETTEEEEEEEECSS-SEEEE-EEECCTTSCCEEEEEEEESEEEECSCEE
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcEEE-EEEccCCCCcccceEEEcCEEEEeeccc
Confidence 344777788889999999999999999997764 4 343 4443 1 578999999999863
No 142
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=89.92 E-value=0.49 Score=48.12 Aligned_cols=55 Identities=11% Similarity=0.171 Sum_probs=43.7
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
...+.+.+.+.+++.|++|+++++|++|..++ ++| +..+|+++.+|.||+|++..
T Consensus 227 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v--~~~~g~~i~~D~Vi~a~G~~ 281 (588)
T 3ics_A 227 DYEMAAYVHEHMKNHDVELVFEDGVDALEENG--AVV--RLKSGSVIQTDMLILAIGVQ 281 (588)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEGGG--TEE--EETTSCEEECSEEEECSCEE
T ss_pred CHHHHHHHHHHHHHcCCEEEECCeEEEEecCC--CEE--EECCCCEEEcCEEEEccCCC
Confidence 34477888888999999999999999998765 333 23357889999999999863
No 143
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=89.89 E-value=0.6 Score=43.93 Aligned_cols=55 Identities=15% Similarity=0.237 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|+++++++.|++|..+++ +.+. |.++ |+++.+|.||+|+...
T Consensus 75 ~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~-v~~~~g~~~~~~~li~AtG~~ 130 (360)
T 3ab1_A 75 DLVESLWAQAERYNPDVVLNETVTKYTKLDD-GTFE-TRTNTGNVYRSRAVLIAAGLG 130 (360)
T ss_dssp HHHHHHHHHHHTTCCEEECSCCEEEEEECTT-SCEE-EEETTSCEEEEEEEEECCTTC
T ss_pred HHHHHHHHHHHHhCCEEEcCCEEEEEEECCC-ceEE-EEECCCcEEEeeEEEEccCCC
Confidence 3677777778888999999999999998763 3454 5665 6689999999999874
No 144
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=89.88 E-value=0.59 Score=44.46 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
.+.+.|.+.+++.|++|+++++|++|+. + + + |++ +|++++||.||.|..... +.+.+.
T Consensus 108 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~--~--~-v~~~~g~~~~ad~vV~AdG~~s~vr~~l~ 167 (379)
T 3alj_A 108 HLHDALVNRARALGVDISVNSEAVAADP-V--G--R-LTLQTGEVLEADLIVGADGVGSKVRDSIG 167 (379)
T ss_dssp HHHHHHHHHHHHTTCEEESSCCEEEEET-T--T--E-EEETTSCEEECSEEEECCCTTCHHHHHHC
T ss_pred HHHHHHHHHHHhcCCEEEeCCEEEEEEe-C--C--E-EEECCCCEEEcCEEEECCCccHHHHHHhc
Confidence 3677888888888999999999999987 3 5 2 455 477899999999999864 444443
No 145
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=89.82 E-value=0.48 Score=43.98 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|+++++++ |.+|..++ +.++ |.++++++++|.||+|+...
T Consensus 71 ~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~--~~~~-v~~~~~~~~~~~vv~A~G~~ 123 (333)
T 1vdc_A 71 ELTDKFRKQSERFGTTIFTET-VTKVDFSS--KPFK-LFTDSKAILADAVILAIGAV 123 (333)
T ss_dssp HHHHHHHHHHHHTTCEEECCC-CCEEECSS--SSEE-EECSSEEEEEEEEEECCCEE
T ss_pred HHHHHHHHHHHHCCCEEEEeE-EEEEEEcC--CEEE-EEECCcEEEcCEEEECCCCC
Confidence 367777777888899999998 99998876 4454 55678889999999999975
No 146
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=89.78 E-value=0.9 Score=42.11 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccCh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGI 218 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VI~a~p~ 218 (444)
+.+.+.+.+++.|++|++++.|.+|..++ ++..|.+ +| +++.+|.||++++.
T Consensus 193 ~~~~l~~~l~~~gv~v~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 250 (335)
T 2zbw_A 193 SVKELMKAHEEGRLEVLTPYELRRVEGDE---RVRWAVVFHNQTQEELALEVDAVLILAGY 250 (335)
T ss_dssp HHHHHHHHHHTTSSEEETTEEEEEEEESS---SEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred HHHHHHhccccCCeEEecCCcceeEccCC---CeeEEEEEECCCCceEEEecCEEEEeecC
Confidence 56677777778899999999999998743 3444443 45 57899999998875
No 147
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=89.77 E-value=0.3 Score=48.57 Aligned_cols=58 Identities=12% Similarity=0.017 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+++.|++|+++++|++|..+++++..+.|.+ +| .+++||.||+|+....
T Consensus 167 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S 230 (497)
T 2bry_A 167 QLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKF 230 (497)
T ss_dssp HHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTC
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCc
Confidence 4677788888888999999999999997521022223555 44 4789999999999864
No 148
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=89.76 E-value=0.36 Score=48.61 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHh-cCcEEEcCceeeEEEecCCCC------eEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERC------CISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~-~G~~v~~~~~V~~I~~~~~~g------~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
.+.+.|.+.+++ .|++|+++++|++|..+++ + +|++|.+ +|+ ++.|+.||+|+....
T Consensus 139 ~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~-g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 208 (540)
T 1chu_A 139 EVETTLVSKALNHPNIRVLERTNAVDLIVSDK-IGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGAS 208 (540)
T ss_dssp ---CCCHHHHHHCTTEEEECSEEEEEEEEGGG-TTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCG
T ss_pred HHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCC-CCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 366677777777 6999999999999998432 4 6776654 354 689999999998754
No 149
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=89.75 E-value=0.52 Score=47.52 Aligned_cols=56 Identities=23% Similarity=0.141 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHhcCc--EEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~--~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|. +|+++++|+++..+++++++ .|.++ |++++||.||+|+...
T Consensus 100 ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w-~V~~~~G~~i~ad~lV~AtG~~ 158 (549)
T 4ap3_A 100 EILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRW-TVRTDRGDEVSARFLVVAAGPL 158 (549)
T ss_dssp HHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEE-EEEETTCCEEEEEEEEECCCSE
T ss_pred HHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEE-EEEECCCCEEEeCEEEECcCCC
Confidence 366777777777787 89999999999988752344 46665 7789999999999953
No 150
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=89.73 E-value=0.61 Score=43.26 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.+.++++++.|.+|..++ +.+. |.++ |+++.+|+||+|+...
T Consensus 66 ~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~--~~~~-v~~~~g~~~~~~~lv~AtG~~ 120 (335)
T 2zbw_A 66 DLVKGLVEQVAPFNPVYSLGERAETLEREG--DLFK-VTTSQGNAYTAKAVIIAAGVG 120 (335)
T ss_dssp HHHHHHHHHHGGGCCEEEESCCEEEEEEET--TEEE-EEETTSCEEEEEEEEECCTTS
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEECC--CEEE-EEECCCCEEEeCEEEECCCCC
Confidence 366777777778899999999999999876 4454 5665 6689999999999874
No 151
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=89.64 E-value=0.51 Score=47.48 Aligned_cols=55 Identities=31% Similarity=0.334 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhcCc--EEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G~--~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
+.+.+.+.+++.|. +|+++++|+++..+++++++ .|.++ |++++||.||+|+...
T Consensus 89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~-~V~~~~G~~i~ad~lV~AtG~~ 146 (540)
T 3gwf_A 89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLW-EVTTDHGEVYRAKYVVNAVGLL 146 (540)
T ss_dssp HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEE-EEEETTSCEEEEEEEEECCCSC
T ss_pred HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEE-EEEEcCCCEEEeCEEEECCccc
Confidence 66777777777887 89999999999988742344 46665 7789999999999963
No 152
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=89.37 E-value=0.62 Score=45.81 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=43.7
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccChh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VI~a~p~~ 219 (444)
...+.+.+.+.+++.|++|+++++|.+|..++ +++. +.+ +| +++.+|.||+|++..
T Consensus 217 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~~~-v~~~~~~~g~~~~~~~D~vv~a~G~~ 278 (470)
T 1dxl_A 217 DAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSG--DGVK-LTVEPSAGGEQTIIEADVVLVSAGRT 278 (470)
T ss_dssp CHHHHHHHHHHHHHSSCCEECSEEEEEEECSS--SSEE-EEEEESSSCCCEEEEESEEECCCCEE
T ss_pred cHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcC--CeEE-EEEEecCCCcceEEECCEEEECCCCC
Confidence 34467788888999999999999999998765 3354 333 34 678999999999864
No 153
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=89.34 E-value=0.73 Score=46.30 Aligned_cols=55 Identities=18% Similarity=0.093 Sum_probs=45.5
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccCh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI 218 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~ 218 (444)
..-+.+.+.+.+++.|+++++++.|.++...+ +++. |.+. ++++.+|.|++|+.-
T Consensus 262 D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~--~~~~-v~~~~~~~~~~D~vLvAvGR 317 (542)
T 4b1b_A 262 DQQCAVKVKLYMEEQGVMFKNGILPKKLTKMD--DKIL-VEFSDKTSELYDTVLYAIGR 317 (542)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETCCEEEEEEET--TEEE-EEETTSCEEEESEEEECSCE
T ss_pred chhHHHHHHHHHHhhcceeecceEEEEEEecC--CeEE-EEEcCCCeEEEEEEEEcccc
Confidence 34477888899999999999999999999887 5565 5554 678899999999975
No 154
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=89.19 E-value=0.68 Score=42.38 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCC-CeEEEEEeC-CeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEER-CCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~-g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|++++++++|++|..+.++ +.+ .|.++ |+++.+|+||+|+...
T Consensus 57 ~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~-~v~~~~g~~~~~~~lv~AtG~~ 114 (310)
T 1fl2_A 57 KLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLH-QIETASGAVLKARSIIVATGAK 114 (310)
T ss_dssp HHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCE-EEEETTSCEEEEEEEEECCCEE
T ss_pred HHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceE-EEEECCCCEEEeCEEEECcCCC
Confidence 36677777788889999999999999865311 234 36665 6689999999999974
No 155
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=88.97 E-value=0.6 Score=45.96 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=40.6
Q ss_pred hHHHHHHHHHhcCcE--EEcCceeeEEEecCCCCeEEEEEeC----C--eEEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRGCE--FLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G~~--v~~~~~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VI~a~p~~ 219 (444)
+.+.+.+.+++.|++ |++++.|++|..++++++++ |.+. | .++.||+||+|+...
T Consensus 103 l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~-V~~~~~~~g~~~~~~~d~VVvAtG~~ 165 (464)
T 2xve_A 103 LWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFT-VTVQDHTTDTIYSEEFDYVVCCTGHF 165 (464)
T ss_dssp HHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEE-EEEEETTTTEEEEEEESEEEECCCSS
T ss_pred HHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEE-EEEEEcCCCceEEEEcCEEEECCCCC
Confidence 666676667777877 99999999999876322443 4442 3 578999999999963
No 156
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=88.73 E-value=0.55 Score=45.23 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|+++++++.|++|+. ++| +..+|+++.+|.||++++..
T Consensus 218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~----~~v--~~~~g~~~~~D~vi~a~G~~ 269 (409)
T 3h8l_A 218 PNSRKAVASIYNQLGIKLVHNFKIKEIRE----HEI--VDEKGNTIPADITILLPPYT 269 (409)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEECS----SEE--EETTSCEEECSEEEEECCEE
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECC----CeE--EECCCCEEeeeEEEECCCCC
Confidence 45777888889999999999999999963 223 23458889999999998763
No 157
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=88.45 E-value=0.66 Score=45.29 Aligned_cols=53 Identities=17% Similarity=-0.086 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-C---Ce---EEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---KE---TYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~---g~---~~~ad~VI~a~p~~ 219 (444)
+.+.+.+.++..+..|+++++|++|..++ ++++ |++ + |+ ++.||+||+|+...
T Consensus 117 l~~~l~~~~~~~~~~i~~~t~V~~v~~~~--~~~~-V~~~~~~~G~~~~~~~~d~VVvAtG~~ 176 (447)
T 2gv8_A 117 IQEYQRIYAQPLLPFIKLATDVLDIEKKD--GSWV-VTYKGTKAGSPISKDIFDAVSICNGHY 176 (447)
T ss_dssp HHHHHHHHHGGGGGGEECSEEEEEEEEET--TEEE-EEEEESSTTCCEEEEEESEEEECCCSS
T ss_pred HHHHHHHHHHHhhCeEEeCCEEEEEEeCC--CeEE-EEEeecCCCCeeEEEEeCEEEECCCCC
Confidence 55566666666677899999999998876 4444 443 2 55 78999999999974
No 158
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=88.28 E-value=0.33 Score=50.54 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=39.1
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
+...+.+.+++.|++|+++++|++|..++ ..+..+.++ ++++.+|.||+|++..
T Consensus 569 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~~--~~v~~~~~~~~~~i~aD~VV~A~G~~ 623 (690)
T 3k30_A 569 EVNRIQRRLIENGVARVTDHAVVAVGAGG--VTVRDTYASIERELECDAVVMVTARL 623 (690)
T ss_dssp CHHHHHHHHHHTTCEEEESEEEEEEETTE--EEEEETTTCCEEEEECSEEEEESCEE
T ss_pred hHHHHHHHHHHCCCEEEcCcEEEEEECCe--EEEEEccCCeEEEEECCEEEECCCCC
Confidence 45677788889999999999999998433 222211122 4578999999999763
No 159
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=88.18 E-value=0.71 Score=47.15 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
.+...+.+.+++. |++|. +..|+.|..++ ++|++|.+. |+++.||.||+|+..+.
T Consensus 118 ~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~--g~V~GV~t~~G~~i~Ad~VVLATG~~s 174 (641)
T 3cp8_A 118 QYSLYMRRIVEHEPNIDLL-QDTVIGVSANS--GKFSSVTVRSGRAIQAKAAILACGTFL 174 (641)
T ss_dssp HHHHHHHHHHHTCTTEEEE-ECCEEEEEEET--TEEEEEEETTSCEEEEEEEEECCTTCB
T ss_pred HHHHHHHHHHHhCCCCEEE-eeEEEEEEecC--CEEEEEEECCCcEEEeCEEEECcCCCC
Confidence 3667777778774 88985 66999998876 668777775 77899999999999753
No 160
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=88.17 E-value=25 Score=36.01 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=29.2
Q ss_pred CCEEEeecccccCCC--cchhhHHHHHHHHHHHHHHHHhC
Q 013390 365 PNLFMAGDWITTRHG--SWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 365 ~~l~laGd~~~~~~~--~~~~egAv~SG~~aA~~il~~lg 402 (444)
++++++||..+...| +.+|+-|+..|...|..|..-+.
T Consensus 351 gRV~L~GDAAH~~~P~~GqG~N~gi~DA~nLawkLa~vl~ 390 (665)
T 1pn0_A 351 ERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLT 390 (665)
T ss_dssp TTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECccccCCCcccCCcchhHHHHHHHHHHHHHHHc
Confidence 789999999876544 26788888888888877766553
No 161
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=88.01 E-value=0.89 Score=46.77 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHhc-Cc-EEEcCceeeEEEecCCCC---eEEEEEe----CCe--EEecCEEEEccChhh
Q 013390 163 KIFEPWMDSMRTR-GC-EFLDGRRVTDFIYDEERC---CISDVVC----GKE--TYSAGAVVLAVGIST 220 (444)
Q Consensus 163 ~l~~~l~~~l~~~-G~-~v~~~~~V~~I~~~~~~g---~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (444)
.+...+.+.+++. |+ +|+.+++|.+|..++ + +|++|.. +|+ ++.|+.||+|+....
T Consensus 152 ~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~--~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~ 218 (643)
T 1jnr_A 152 SYKPIIAEAAKMAVGEENIYERVFIFELLKDN--NDPNAVAGAVGFSVREPKFYVFKAKAVILATGGAT 218 (643)
T ss_dssp THHHHHHHHHHHHHCGGGEECSEEEEEEEECT--TCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred HHHHHHHHHHHhcCCCcEEEecCEEEEEEEcC--CccceeEEEEEEEecCCcEEEEEcCEEEECCCccc
Confidence 3667777777777 99 999999999999875 4 7877753 244 689999999998754
No 162
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=87.77 E-value=0.77 Score=45.70 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=41.8
Q ss_pred CcchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CC----eEEecCEEEEccCh
Q 013390 159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK----ETYSAGAVVLAVGI 218 (444)
Q Consensus 159 g~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g----~~~~ad~VI~a~p~ 218 (444)
.+...+.+.+.+.+++.|++|++|+.|++|+.+ +.+..+.. +| +++.||.||.|+..
T Consensus 269 ~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~---~~~~~~~~~dg~~~~~~i~ad~viwa~Gv 330 (502)
T 4g6h_A 269 MFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEK---QLLAKTKHEDGKITEETIPYGTLIWATGN 330 (502)
T ss_dssp TSCHHHHHHHHHHHHHTTCEEETTEEEEEECSS---EEEEEEECTTSCEEEEEEECSEEEECCCE
T ss_pred CCCHHHHHHHHHHHHhcceeeecCceEEEEeCC---ceEEEEEecCcccceeeeccCEEEEccCC
Confidence 345668888889999999999999999999643 22222222 23 46899999999864
No 163
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=87.66 E-value=1.3 Score=43.77 Aligned_cols=54 Identities=22% Similarity=0.135 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe---CC--eEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~---~g--~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++. ++|++++.|++|+.++ ++++ +.+ +| +++.+|.||+|++..
T Consensus 215 ~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~--~~v~-v~~~~~~G~~~~i~~D~Vi~a~G~~ 273 (492)
T 3ic9_A 215 EEMKRYAEKTFNEE-FYFDAKARVISTIEKE--DAVE-VIYFDKSGQKTTESFQYVLAATGRK 273 (492)
T ss_dssp HHHHHHHHHHHHTT-SEEETTCEEEEEEECS--SSEE-EEEECTTCCEEEEEESEEEECSCCE
T ss_pred HHHHHHHHHHHhhC-cEEEECCEEEEEEEcC--CEEE-EEEEeCCCceEEEECCEEEEeeCCc
Confidence 44677777888777 9999999999999876 4465 443 46 678999999999864
No 164
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=87.57 E-value=1.2 Score=43.97 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-C---Ce--EEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---KE--TYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~---g~--~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|++++.|.+|...++ +.+. |.+ + |+ ++.+|.||++++..
T Consensus 225 ~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~-~~~~-v~~~~~~~g~~~~~~~D~vi~a~G~~ 286 (488)
T 3dgz_A 225 QQMSSLVTEHMESHGTQFLKGCVPSHIKKLPT-NQLQ-VTWEDHASGKEDTGTFDTVLWAIGRV 286 (488)
T ss_dssp HHHHHHHHHHHHHTTCEEEETEEEEEEEECTT-SCEE-EEEEETTTTEEEEEEESEEEECSCEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcEE-EEEEeCCCCeeEEEECCEEEEcccCC
Confidence 44777888889999999999999999987543 4443 332 2 44 47899999999864
No 165
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=87.51 E-value=0.98 Score=43.21 Aligned_cols=58 Identities=10% Similarity=0.098 Sum_probs=42.9
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh-HHHhhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
+.+.|.+.+ .|++|+++++|++|..++ ++|+ |.+. |++++||.||.|...+. +.+.+.
T Consensus 101 l~~~L~~~~--~~~~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vV~AdG~~S~vr~~~~ 160 (397)
T 2vou_A 101 IYGGLYELF--GPERYHTSKCLVGLSQDS--ETVQ-MRFSDGTKAEANWVIGADGGASVVRKRLL 160 (397)
T ss_dssp HHHHHHHHH--CSTTEETTCCEEEEEECS--SCEE-EEETTSCEEEESEEEECCCTTCHHHHHHH
T ss_pred HHHHHHHhC--CCcEEEcCCEEEEEEecC--CEEE-EEECCCCEEECCEEEECCCcchhHHHHhc
Confidence 444554443 388999999999999877 4475 5554 77899999999999864 445544
No 166
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=87.47 E-value=0.79 Score=43.83 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=36.8
Q ss_pred HHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 013390 168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI 218 (444)
Q Consensus 168 l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~ 218 (444)
..+.+++.|++++++++|++|..++ .. |.+ +|+++.+|++|+|+..
T Consensus 68 ~~~~~~~~~i~~~~~~~V~~id~~~--~~---v~~~~g~~~~yd~lvlAtG~ 114 (385)
T 3klj_A 68 KNDWYEKNNIKVITSEFATSIDPNN--KL---VTLKSGEKIKYEKLIIASGS 114 (385)
T ss_dssp CHHHHHHTTCEEECSCCEEEEETTT--TE---EEETTSCEEECSEEEECCCE
T ss_pred CHHHHHHCCCEEEeCCEEEEEECCC--CE---EEECCCCEEECCEEEEecCC
Confidence 3455567899999999999999765 43 344 4788999999999986
No 167
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=87.33 E-value=0.99 Score=44.07 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=44.6
Q ss_pred cchhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 160 ~~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
+...+.+.+.+.+++. +++++++.|.+|..++ ++..+..+++++.+|.||+|++..
T Consensus 188 ~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~---~v~~v~~~g~~i~~D~Vv~a~G~~ 243 (449)
T 3kd9_A 188 FDKEVTDILEEKLKKH-VNLRLQEITMKIEGEE---RVEKVVTDAGEYKAELVILATGIK 243 (449)
T ss_dssp SCHHHHHHHHHHHTTT-SEEEESCCEEEEECSS---SCCEEEETTEEEECSEEEECSCEE
T ss_pred cCHHHHHHHHHHHHhC-cEEEeCCeEEEEeccC---cEEEEEeCCCEEECCEEEEeeCCc
Confidence 3444677788888888 9999999999998654 355567788899999999999864
No 168
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=87.32 E-value=0.77 Score=46.20 Aligned_cols=55 Identities=16% Similarity=0.112 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhcCc--EEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G~--~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
+.+.+.+.+++.|. +|+++++|+++..+++++++ .|.++ |++++||.||+|+...
T Consensus 89 i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w-~V~~~~G~~~~ad~lV~AtG~~ 146 (545)
T 3uox_A 89 MLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLW-EVTLDNEEVVTCRFLISATGPL 146 (545)
T ss_dssp HHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEE-EEEETTTEEEEEEEEEECCCSC
T ss_pred HHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEE-EEEECCCCEEEeCEEEECcCCC
Confidence 66667666777776 89999999999987642334 46665 7889999999999964
No 169
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=87.19 E-value=1.1 Score=40.94 Aligned_cols=51 Identities=10% Similarity=0.239 Sum_probs=36.7
Q ss_pred HHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEeC----C--eEEecCEEEEccCh
Q 013390 166 EPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGI 218 (444)
Q Consensus 166 ~~l~~~l~~-~G~~v~~~~~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VI~a~p~ 218 (444)
..+.+.+++ .|++|++++.|++|..++ +++..|.+. | .++.+|.||++++.
T Consensus 183 ~~~~~~l~~~~gv~v~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 240 (310)
T 1fl2_A 183 QVLQDKLRSLKNVDIILNAQTTEVKGDG--SKVVGLEYRDRVSGDIHNIELAGIFVQIGL 240 (310)
T ss_dssp HHHHHHHHTCTTEEEESSEEEEEEEESS--SSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred HHHHHHHhhCCCeEEecCCceEEEEcCC--CcEEEEEEEECCCCcEEEEEcCEEEEeeCC
Confidence 345556666 599999999999998765 456545442 4 36789999998764
No 170
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=87.00 E-value=0.74 Score=45.66 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=39.6
Q ss_pred HHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 168 l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
+.+.+++.|++|++++.|++|..++ ++..|.++ |+++.+|.||++++...
T Consensus 263 le~~l~~~GV~v~~~~~v~~i~~~~---~v~~v~~~~g~~i~aD~Vv~a~G~~p 313 (493)
T 1y56_A 263 VIQELERWGIDYVHIPNVKRVEGNE---KVERVIDMNNHEYKVDALIFADGRRP 313 (493)
T ss_dssp HHHHHHHHTCEEEECSSEEEEECSS---SCCEEEETTCCEEECSEEEECCCEEE
T ss_pred HHHHHHhCCcEEEeCCeeEEEecCC---ceEEEEeCCCeEEEeCEEEECCCcCc
Confidence 3466788999999999999998543 35556665 77899999999998753
No 171
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=86.87 E-value=1.9 Score=42.03 Aligned_cols=42 Identities=21% Similarity=0.110 Sum_probs=32.8
Q ss_pred cCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChh
Q 013390 175 RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS 219 (444)
Q Consensus 175 ~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~ 219 (444)
.|++|++++.|++|..++ +++. |.+ +|+ ++.+|.||+|+...
T Consensus 329 ~~v~i~~~~~v~~v~~~~--~~~~-v~~~~~~~g~~~~~~~D~Vv~AtG~~ 376 (463)
T 3s5w_A 329 PRHAFRCMTTVERATATA--QGIE-LALRDAGSGELSVETYDAVILATGYE 376 (463)
T ss_dssp CCSEEETTEEEEEEEEET--TEEE-EEEEETTTCCEEEEEESEEEECCCEE
T ss_pred CCeEEEeCCEEEEEEecC--CEEE-EEEEEcCCCCeEEEECCEEEEeeCCC
Confidence 589999999999999876 4444 443 354 48999999999874
No 172
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=86.83 E-value=1.2 Score=40.68 Aligned_cols=53 Identities=19% Similarity=0.339 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|+++++ +.|.+|..++ +.++ |.+ +|+++.+|.||+|+...
T Consensus 60 ~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~--~~~~-v~~~~g~~~~~~~vv~AtG~~ 113 (311)
T 2q0l_A 60 DFMQPWQEQCFRFGLKHEM-TAVQRVSKKD--SHFV-ILAEDGKTFEAKSVIIATGGS 113 (311)
T ss_dssp HHHHHHHHHHHTTSCEEEC-SCEEEEEEET--TEEE-EEETTSCEEEEEEEEECCCEE
T ss_pred HHHHHHHHHHHHcCCEEEE-EEEEEEEEcC--CEEE-EEEcCCCEEECCEEEECCCCC
Confidence 3667777777788999998 8999999876 4454 444 47789999999999853
No 173
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=86.71 E-value=0.42 Score=46.46 Aligned_cols=50 Identities=8% Similarity=-0.053 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-C--CeEEecCEEEEccCh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--KETYSAGAVVLAVGI 218 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~--g~~~~ad~VI~a~p~ 218 (444)
+.+.+.+.+++.|++|++|+.|++|+. ++++ +.. + ++++.+|.||++++.
T Consensus 202 ~~~~l~~~l~~~GV~i~~~~~v~~v~~----~~v~-~~~~~~~g~~i~~D~vv~a~G~ 254 (430)
T 3h28_A 202 SKRLVEDLFAERNIDWIANVAVKAIEP----DKVI-YEDLNGNTHEVPAKFTMFMPSF 254 (430)
T ss_dssp HHHHHHHHHHHTTCEEECSCEEEEECS----SEEE-EECTTSCEEEEECSEEEEECEE
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEeC----CeEE-EEecCCCceEEeeeEEEECCCC
Confidence 567788889999999999999999963 2343 222 1 568999999999764
No 174
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=86.20 E-value=0.3 Score=45.49 Aligned_cols=42 Identities=14% Similarity=0.282 Sum_probs=30.8
Q ss_pred CCCCCCEEEeeccccc--CCCc--chhhHHHHHHHHHHHHHHHHhC
Q 013390 361 FTSFPNLFMAGDWITT--RHGS--WSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 361 ~~~~~~l~laGd~~~~--~~~~--~~~egAv~SG~~aA~~il~~lg 402 (444)
.+.+||||.|||.... +.+. .+.-+++.||++||+.|++.|.
T Consensus 280 ~t~vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~~la 325 (326)
T 3fpz_A 280 YAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA 325 (326)
T ss_dssp CTTSBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999997642 1110 1455678999999999999874
No 175
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=85.87 E-value=1.1 Score=40.96 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|+++++ +.|.+|..++ +.+. |.++ ++++.+|+||+|+...
T Consensus 71 ~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~--~~~~-v~~~~g~~~~~d~lvlAtG~~ 124 (323)
T 3f8d_A 71 DMIKVFNKHIEKYEVPVLL-DIVEKIENRG--DEFV-VKTKRKGEFKADSVILGIGVK 124 (323)
T ss_dssp HHHHHHHHHHHTTTCCEEE-SCEEEEEEC----CEE-EEESSSCEEEEEEEEECCCCE
T ss_pred HHHHHHHHHHHHcCCEEEE-EEEEEEEecC--CEEE-EEECCCCEEEcCEEEECcCCC
Confidence 4777777888888999999 9999999876 4454 5665 6889999999999876
No 176
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=85.79 E-value=1.3 Score=40.83 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CCeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|+++++++ |.+|..++ +.+. +.+ ++.++.+|.||+|+...
T Consensus 85 ~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~--~~~~-v~~~~~~~~~~~~~d~vvlAtG~~ 141 (338)
T 3itj_A 85 ELMDRMREQSTKFGTEIITET-VSKVDLSS--KPFK-LWTEFNEDAEPVTTDAIILATGAS 141 (338)
T ss_dssp HHHHHHHHHHHHTTCEEECSC-EEEEECSS--SSEE-EEETTCSSSCCEEEEEEEECCCEE
T ss_pred HHHHHHHHHHHHcCCEEEEeE-EEEEEEcC--CEEE-EEEEecCCCcEEEeCEEEECcCCC
Confidence 477788888888999999999 99999876 4465 555 46788999999999873
No 177
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=85.28 E-value=1.3 Score=44.11 Aligned_cols=56 Identities=9% Similarity=0.178 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCC-CCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE-RCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~-~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|++++++++|++|..+.+ ++.+. |.++ |+++.+|+||+|+...
T Consensus 268 ~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~-V~~~~g~~~~~d~vVlAtG~~ 325 (521)
T 1hyu_A 268 KLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQ-IETASGAVLKARSIIIATGAK 325 (521)
T ss_dssp HHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEE-EEETTSCEEEEEEEEECCCEE
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEE-EEECCCCEEEcCEEEECCCCC
Confidence 3667777888888999999999999986421 12343 6665 7789999999999974
No 178
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=85.11 E-value=2.2 Score=38.91 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=36.0
Q ss_pred HHHHHHH-hcCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccCh
Q 013390 167 PWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGI 218 (444)
Q Consensus 167 ~l~~~l~-~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~ 218 (444)
.+.+.+. +.|++|+++++|++|..++ +++..|.+ +|+ ++.+|.||++++.
T Consensus 183 ~~~~~l~~~~gv~v~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 239 (311)
T 2q0l_A 183 ITLEHAKNNDKIEFLTPYVVEEIKGDA--SGVSSLSIKNTATNEKRELVVPGFFIFVGY 239 (311)
T ss_dssp HHHHHHHTCTTEEEETTEEEEEEEEET--TEEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred HHHHHHhhCCCeEEEeCCEEEEEECCC--CcEeEEEEEecCCCceEEEecCEEEEEecC
Confidence 3455554 4699999999999998775 44544443 354 6899999998864
No 179
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=84.94 E-value=1.9 Score=43.29 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=42.7
Q ss_pred HHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEeC----Ce--EE---ecCEEEEccChhhHHHhhhc
Q 013390 168 WMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TY---SAGAVVLAVGISTLQELIKN 227 (444)
Q Consensus 168 l~~~l~~-~G~~v~~~~~V~~I~~~~~~g~v~~v~~~----g~--~~---~ad~VI~a~p~~~~~~ll~~ 227 (444)
+.+.+.+ .+++|++++.|++|..++ +++++|.+. |+ ++ .++.||+|+......+|+..
T Consensus 201 ~l~~~~~~~~~~i~~~~~V~~i~~~~--~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~ 268 (546)
T 1kdg_A 201 YLQTALARPNFTFKTNVMVSNVVRNG--SQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQ 268 (546)
T ss_dssp HHHHHHTCTTEEEECSCCEEEEEEET--TEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHH
T ss_pred HHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHH
Confidence 3344443 588999999999999976 678888763 43 33 78999999998766666543
No 180
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=84.77 E-value=1.2 Score=45.88 Aligned_cols=57 Identities=16% Similarity=0.206 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHhc--CcEEEcCceeeEEEecCCC-CeEEEEEe----CCe--EEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTR--GCEFLDGRRVTDFIYDEER-CCISDVVC----GKE--TYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~--G~~v~~~~~V~~I~~~~~~-g~v~~v~~----~g~--~~~ad~VI~a~p~~ 219 (444)
.+...|.+.+++. |++|+.++.|.+|..++++ |+|.+|.. +|+ .+.|++||+|+.-.
T Consensus 167 ~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~ 232 (662)
T 3gyx_A 167 SYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGA 232 (662)
T ss_dssp SHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCB
T ss_pred HHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCcc
Confidence 4778888888887 9999999999999987620 27877754 243 57999999999864
No 181
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=84.75 E-value=1.5 Score=44.06 Aligned_cols=55 Identities=16% Similarity=0.038 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhcC--cEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRG--CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G--~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
+.+.+....++.+ .+|+++++|.++..+++++.+ .|.++ |++++||.||+|+...
T Consensus 96 i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w-~V~~~~G~~~~ad~vV~AtG~~ 153 (542)
T 1w4x_A 96 ILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTW-TVDTNHGDRIRARYLIMASGQL 153 (542)
T ss_dssp HHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEE-EEEETTCCEEEEEEEEECCCSC
T ss_pred HHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeE-EEEECCCCEEEeCEEEECcCCC
Confidence 5555555455544 579999999999987642344 46665 7789999999999964
No 182
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=84.48 E-value=1.8 Score=39.78 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|+++++ +.|.+|..++ +.++ |.++++++.+|.||+|+...
T Consensus 73 ~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~--~~~~-v~~~~~~~~~~~li~AtG~~ 125 (319)
T 3cty_A 73 ELAKLFADHAANYAKIREG-VEVRSIKKTQ--GGFD-IETNDDTYHAKYVIITTGTT 125 (319)
T ss_dssp HHHHHHHHHHHTTSEEEET-CCEEEEEEET--TEEE-EEESSSEEEEEEEEECCCEE
T ss_pred HHHHHHHHHHHHcCCEEEE-eeEEEEEEeC--CEEE-EEECCCEEEeCEEEECCCCC
Confidence 3667777778888999998 7999999876 4454 66677789999999999964
No 183
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=84.01 E-value=1.7 Score=39.86 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=35.8
Q ss_pred HHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC------CeEEecCEEEEccCh
Q 013390 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------KETYSAGAVVLAVGI 218 (444)
Q Consensus 167 ~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~------g~~~~ad~VI~a~p~ 218 (444)
...+.+++.|++++++++|.+|..++ + +..|.+. ++++.+|.||++++.
T Consensus 194 ~~~~~l~~~gv~~~~~~~v~~i~~~~--~-~~~v~~~~~~~g~~~~~~~D~vv~a~G~ 248 (332)
T 3lzw_A 194 HSVENLHASKVNVLTPFVPAELIGED--K-IEQLVLEEVKGDRKEILEIDDLIVNYGF 248 (332)
T ss_dssp HHHHHHHHSSCEEETTEEEEEEECSS--S-CCEEEEEETTSCCEEEEECSEEEECCCE
T ss_pred HHHHHHhcCCeEEEeCceeeEEecCC--c-eEEEEEEecCCCceEEEECCEEEEeecc
Confidence 34455778999999999999998765 3 2234332 356899999998774
No 184
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=83.86 E-value=1.2 Score=43.63 Aligned_cols=53 Identities=23% Similarity=0.348 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-C--eEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g--~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|+++++|++|.. + + ++ +..+ | +++.+|.||+|++..
T Consensus 212 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~--~-v~-v~~~~G~~~~i~~D~vv~a~G~~ 267 (458)
T 1lvl_A 212 SELTAPVAESLKKLGIALHLGHSVEGYEN-G--C-LL-ANDGKGGQLRLEADRVLVAVGRR 267 (458)
T ss_dssp HHHHHHHHHHHHHHTCEEETTCEEEEEET-T--E-EE-EECSSSCCCEECCSCEEECCCEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEe-C--C-EE-EEECCCceEEEECCEEEECcCCC
Confidence 44667788888899999999999999986 4 4 54 4433 5 578999999999864
No 185
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=83.79 E-value=0.86 Score=43.63 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (444)
|.+.|.+.++ +++|+++++|++|+.++ ++|+ |++. |++++||.||.|.....
T Consensus 130 l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vV~AdG~~S 182 (398)
T 2xdo_A 130 LRAILLNSLE--NDTVIWDRKLVMLEPGK--KKWT-LTFENKPSETADLVILANGGMS 182 (398)
T ss_dssp HHHHHHHTSC--TTSEEESCCEEEEEECS--SSEE-EEETTSCCEEESEEEECSCTTC
T ss_pred HHHHHHhhcC--CCEEEECCEEEEEEECC--CEEE-EEECCCcEEecCEEEECCCcch
Confidence 4455555443 36899999999999877 4465 5654 77899999999999864
No 186
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=83.55 E-value=1.6 Score=39.96 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
+.....+...+.+..+..+..+....... . ..+..++++++||++|+||...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~d~liiAtGs~ 115 (312)
T 4gcm_A 64 LSTKMFEHAKKFGAVYQYGDIKSVEDKGE--Y--KVINFGNKELTAKAVIIATGAE 115 (312)
T ss_dssp HHHHHHHHHHHTTCEEEECCCCEEEECSS--C--EEEECSSCEEEEEEEEECCCEE
T ss_pred HHHHHHHHHhhccccccceeeeeeeeeec--c--eeeccCCeEEEeceeEEcccCc
Confidence 44555555667778888888887766544 2 2355668899999999999863
No 187
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=83.49 E-value=1.7 Score=40.80 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhcC-cEEEcCceeeEEEecCCCCeEEEEEe-CCeEEe-cCEEEEccChh
Q 013390 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYS-AGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G-~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~-ad~VI~a~p~~ 219 (444)
+.+.+.+.+++.| ++|++++.|.+|..++ +.+. |.+ +|+++. +|.||++++..
T Consensus 216 ~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~--~~~~-v~~~~g~~~~~~d~vi~a~G~~ 271 (369)
T 3d1c_A 216 TRQRLGNVIKQGARIEMNVHYTVKDIDFNN--GQYH-ISFDSGQSVHTPHEPILATGFD 271 (369)
T ss_dssp HHHHHHHHHHTTCCEEEECSCCEEEEEEET--TEEE-EEESSSCCEEESSCCEECCCBC
T ss_pred HHHHHHHHHhhCCcEEEecCcEEEEEEecC--CceE-EEecCCeEeccCCceEEeeccC
Confidence 4567777788887 9999999999998655 4343 554 466554 69999998763
No 188
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=83.43 E-value=1.3 Score=43.28 Aligned_cols=55 Identities=11% Similarity=-0.054 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEE--EEEe-CCe----EEecCEEEEccCh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS--DVVC-GKE----TYSAGAVVLAVGI 218 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~--~v~~-~g~----~~~ad~VI~a~p~ 218 (444)
+.+.+....+..|.+|+++++|++|..++++++.+ .|.+ +|+ ++.||+||+|+..
T Consensus 129 ~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~ 190 (463)
T 3s5w_A 129 FNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGG 190 (463)
T ss_dssp HHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCC
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCC
Confidence 55556555666788999999999999873212332 2443 343 7899999999985
No 189
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=83.30 E-value=2.5 Score=38.93 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=34.2
Q ss_pred HHhcCcEEEcCceeeEEEecCCCCeEEEEEe----CC--eEEecCEEEEccCh
Q 013390 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGI 218 (444)
Q Consensus 172 l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VI~a~p~ 218 (444)
+++.|++|++++.|.+|..+++++++..|.+ +| +++.+|.||++++.
T Consensus 205 ~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 257 (333)
T 1vdc_A 205 LSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGH 257 (333)
T ss_dssp HTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred HhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCC
Confidence 4578999999999999987652014544443 34 57899999999875
No 190
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=83.24 E-value=2.7 Score=39.38 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=42.4
Q ss_pred hHHHHHHHHHh-cCcEEEcCceeeEEEecCC-----------------CCeEEEEEe-------CC--------eEEecC
Q 013390 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEE-----------------RCCISDVVC-------GK--------ETYSAG 210 (444)
Q Consensus 164 l~~~l~~~l~~-~G~~v~~~~~V~~I~~~~~-----------------~g~v~~v~~-------~g--------~~~~ad 210 (444)
+.+.|.+.+.+ .|++|+.++.|.+|..+++ ..+|.+|.+ ++ .+++|+
T Consensus 162 ~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak 241 (344)
T 3jsk_A 162 FTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAP 241 (344)
T ss_dssp HHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECS
T ss_pred HHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEEcC
Confidence 56777777777 4899999999999988652 016777654 12 468999
Q ss_pred EEEEccChhh
Q 013390 211 AVVLAVGIST 220 (444)
Q Consensus 211 ~VI~a~p~~~ 220 (444)
.||.|+....
T Consensus 242 ~VV~ATG~~s 251 (344)
T 3jsk_A 242 VIISTTGHDG 251 (344)
T ss_dssp EEEECCCSSS
T ss_pred EEEECCCCCc
Confidence 9999998753
No 191
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=82.81 E-value=2.5 Score=38.68 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|+++++++ |..|..++ +.++ +..+++++.+|.||+|+...
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~--~~~~-v~~~~~~~~~~~lv~AtG~~ 115 (320)
T 1trb_A 63 LLMERMHEHATKFETEIIFDH-INKVDLQN--RPFR-LNGDNGEYTCDALIIATGAS 115 (320)
T ss_dssp HHHHHHHHHHHHTTCEEECCC-EEEEECSS--SSEE-EEESSCEEEEEEEEECCCEE
T ss_pred HHHHHHHHHHHHCCCEEEEee-eeEEEecC--CEEE-EEeCCCEEEcCEEEECCCCC
Confidence 366777777888899999997 99998766 4454 44467789999999999864
No 192
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=81.77 E-value=4 Score=37.86 Aligned_cols=39 Identities=10% Similarity=0.212 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhc-CcEEEcCceeeEEEecCC-C-C--eEEEEEe
Q 013390 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEE-R-C--CISDVVC 202 (444)
Q Consensus 164 l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~-~-g--~v~~v~~ 202 (444)
+...|.+.+.+. |++|+.+++|.+|..+++ + | +|++|.+
T Consensus 148 ~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv 191 (326)
T 2gjc_A 148 FISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVT 191 (326)
T ss_dssp HHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEE
T ss_pred HHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEe
Confidence 567777777775 899999999999998741 1 3 6777765
No 193
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=81.74 E-value=1.5 Score=44.00 Aligned_cols=52 Identities=21% Similarity=0.335 Sum_probs=39.8
Q ss_pred hcCcEEEcCceeeEEEecCCCCeEEEEEe-C---Ce--EEecC-EEEEccChhhHHHhhh
Q 013390 174 TRGCEFLDGRRVTDFIYDEERCCISDVVC-G---KE--TYSAG-AVVLAVGISTLQELIK 226 (444)
Q Consensus 174 ~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~---g~--~~~ad-~VI~a~p~~~~~~ll~ 226 (444)
+.|++|++++.|++|..+++ +++++|.+ + |+ ++.|+ .||+|+......+|+.
T Consensus 221 ~~~~~i~~~~~V~~i~~~~~-~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL~ 279 (546)
T 2jbv_A 221 QENFTLLTGLRARQLVFDAD-RRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLM 279 (546)
T ss_dssp CTTEEEECSCEEEEEEECTT-SBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred CCCcEEEeCCEEEEEEECCC-CeEEEEEEEECCCCcEEEEEeCccEEEecCccCCchhhh
Confidence 46889999999999999764 56777775 2 43 67898 8999999865555543
No 194
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=81.69 E-value=3.6 Score=37.79 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=35.2
Q ss_pred HHHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccCh
Q 013390 166 EPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGI 218 (444)
Q Consensus 166 ~~l~~~l~~-~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~ 218 (444)
..+.+.+.+ .|++|+++++|++|..++ ++.+|.+ +|+ ++.+|.||++++.
T Consensus 191 ~~~~~~l~~~~gv~i~~~~~v~~i~~~~---~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 247 (325)
T 2q7v_A 191 KVAQARAFANPKMKFIWDTAVEEIQGAD---SVSGVKLRNLKTGEVSELATDGVFIFIGH 247 (325)
T ss_dssp HHHHHHHHTCTTEEEECSEEEEEEEESS---SEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred hHHHHHHHhcCCceEecCCceEEEccCC---cEEEEEEEECCCCcEEEEEcCEEEEccCC
Confidence 344445544 599999999999998643 3544544 353 6899999998864
No 195
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=81.53 E-value=2.4 Score=40.57 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=42.8
Q ss_pred hHHHHHHHHHh-cC-cEEEcCceeeEEEecCCCCeEEEEEeC---C--eEEecCEEEEccChhh-HHHhhh
Q 013390 164 IFEPWMDSMRT-RG-CEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 164 l~~~l~~~l~~-~G-~~v~~~~~V~~I~~~~~~g~v~~v~~~---g--~~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
|.+.|.+.+.+ .| ++|+++++|++|.. ++ + |+....+ | .+++||.||.|..... +.+.+.
T Consensus 109 l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~-~-v~v~~~~~~~g~~~~~~ad~vV~AdG~~S~vR~~l~ 176 (410)
T 3c96_A 109 LQMILLAAVRERLGQQAVRTGLGVERIEE-RD-G-RVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLH 176 (410)
T ss_dssp HHHHHHHHHHHHHCTTSEEESEEEEEEEE-ET-T-EEEEEEEETTSCEEEEEESEEEECCCTTCHHHHHHC
T ss_pred HHHHHHHHHHhhCCCcEEEECCEEEEEec-CC-c-cEEEEecCCCCCceEEecCEEEECCCccchhHHHhc
Confidence 66677777765 36 48999999999998 53 4 6532223 5 5789999999999864 445443
No 196
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=81.42 E-value=2.1 Score=41.65 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=41.9
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
...+.+.+.+.+++.|+++++++.|++++ + .++ +..+|+++++|.||+|++..
T Consensus 187 d~~~~~~~~~~l~~~gV~i~~~~~v~~~~--~--~~v--~~~~g~~~~~D~vl~a~G~~ 239 (437)
T 4eqs_A 187 DADMNQPILDELDKREIPYRLNEEINAIN--G--NEI--TFKSGKVEHYDMIIEGVGTH 239 (437)
T ss_dssp CGGGGHHHHHHHHHTTCCEEESCCEEEEE--T--TEE--EETTSCEEECSEEEECCCEE
T ss_pred cchhHHHHHHHhhccceEEEeccEEEEec--C--Cee--eecCCeEEeeeeEEEEecee
Confidence 34477888899999999999999999885 2 223 23458889999999999753
No 197
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=81.09 E-value=1.6 Score=39.29 Aligned_cols=53 Identities=21% Similarity=0.201 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHhc-CcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~-G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++. +.++. ++.|++|..++ +.+. |.++ ++++.+|.||+|+...
T Consensus 57 ~~~~~~~~~~~~~~~v~~~-~~~v~~i~~~~--~~~~-v~~~~g~~~~~d~vviAtG~~ 111 (297)
T 3fbs_A 57 EIIAEARRQIERYPTIHWV-EGRVTDAKGSF--GEFI-VEIDGGRRETAGRLILAMGVT 111 (297)
T ss_dssp HHHHHHHHHHTTCTTEEEE-ESCEEEEEEET--TEEE-EEETTSCEEEEEEEEECCCCE
T ss_pred HHHHHHHHHHHhcCCeEEE-EeEEEEEEEcC--CeEE-EEECCCCEEEcCEEEECCCCC
Confidence 3667777777766 45655 56999999887 4454 6665 7789999999999874
No 198
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=80.62 E-value=1 Score=43.67 Aligned_cols=51 Identities=8% Similarity=-0.051 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-C--CeEEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--KETYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~--g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+++.|+++++|+.|++|+. +++. +.. + ++++.+|.||++++..
T Consensus 202 ~~~~l~~~l~~~GV~~~~~~~v~~v~~----~~~~-~~~~~g~~~~i~~d~vi~~~G~~ 255 (430)
T 3hyw_A 202 SKRLVEDLFAERNIDWIANVAVKAIEP----DKVI-YEDLNGNTHEVPAKFTMFMPSFQ 255 (430)
T ss_dssp HHHHHHHHHHHTTCEEECSCEEEEECS----SEEE-EECTTSCEEEEECSEEEEECEEE
T ss_pred HHHHHHHHHHhCCeEEEeCceEEEEeC----CceE-EEeeCCCceEeecceEEEeccCC
Confidence 455677778899999999999999863 3353 333 3 3578999999998753
No 199
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=80.60 E-value=3.7 Score=37.37 Aligned_cols=48 Identities=19% Similarity=0.410 Sum_probs=34.4
Q ss_pred HHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEeC----Ce--EEecCEEEEccCh
Q 013390 168 WMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGI 218 (444)
Q Consensus 168 l~~~l~~-~G~~v~~~~~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VI~a~p~ 218 (444)
+.+.+.+ .|+++++++.|++|..++ + +..|.+. |+ ++.+|.||++++.
T Consensus 195 ~~~~~~~~~gv~~~~~~~v~~i~~~~--~-~~~v~~~~~~~g~~~~~~~D~vv~a~G~ 249 (323)
T 3f8d_A 195 YVETVKKKPNVEFVLNSVVKEIKGDK--V-VKQVVVENLKTGEIKELNVNGVFIEIGF 249 (323)
T ss_dssp HHHHHHTCTTEEEECSEEEEEEEESS--S-EEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred HHHHHHhCCCcEEEeCCEEEEEeccC--c-eeEEEEEECCCCceEEEEcCEEEEEECC
Confidence 3344444 499999999999998764 3 4444432 54 6899999999876
No 200
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=80.41 E-value=2.5 Score=40.98 Aligned_cols=51 Identities=8% Similarity=-0.021 Sum_probs=37.7
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--C-----CeEEecCEEEEccCh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G-----KETYSAGAVVLAVGI 218 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~-----g~~~~ad~VI~a~p~ 218 (444)
..+.+.+.+++.|+++++++.|++|+.+ +++.... + ++++.+|.||++++.
T Consensus 210 ~~~~~~~~l~~~gI~~~~~~~v~~v~~~----~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~ 267 (437)
T 3sx6_A 210 SKGILTKGLKEEGIEAYTNCKVTKVEDN----KMYVTQVDEKGETIKEMVLPVKFGMMIPAF 267 (437)
T ss_dssp HHHHHHHHHHHTTCEEECSEEEEEEETT----EEEEEEECTTSCEEEEEEEECSEEEEECCE
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEECC----eEEEEecccCCccccceEEEEeEEEEcCCC
Confidence 5667778888999999999999999732 3432221 2 457899999999763
No 201
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=79.87 E-value=0.7 Score=44.28 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=35.1
Q ss_pred HHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccCh
Q 013390 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI 218 (444)
Q Consensus 172 l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~ 218 (444)
+++.|++|++++.|..++.+++ + .. |.++ |+++.+|.||+++|.
T Consensus 212 l~~~gi~v~~~~~v~~v~~~~~-~-~~-v~~~~g~~i~~D~vi~~~g~ 256 (401)
T 3vrd_B 212 TENALIEWHPGPDAAVVKTDTE-A-MT-VETSFGETFKAAVINLIPPQ 256 (401)
T ss_dssp STTCSEEEECTTTTCEEEEETT-T-TE-EEETTSCEEECSEEEECCCE
T ss_pred HHhcCcEEEeCceEEEEEeccc-c-eE-EEcCCCcEEEeeEEEEecCc
Confidence 4567899999999999998764 2 33 5554 889999999998775
No 202
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=79.78 E-value=3.4 Score=37.89 Aligned_cols=55 Identities=20% Similarity=0.137 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEec--CCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYD--EERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~--~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|++++. +.|.+|..+ ++ +.+..+..+|+++.+|+||+|+...
T Consensus 66 ~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~-~~~~v~~~~g~~~~~~~vv~AtG~~ 122 (325)
T 2q7v_A 66 ELAQRMHQQAEKFGAKVEM-DEVQGVQHDATSH-PYPFTVRGYNGEYRAKAVILATGAD 122 (325)
T ss_dssp HHHHHHHHHHHHTTCEEEE-CCEEEEEECTTSS-SCCEEEEESSCEEEEEEEEECCCEE
T ss_pred HHHHHHHHHHHHcCCEEEe-eeEEEEEeccCCC-ceEEEEECCCCEEEeCEEEECcCCC
Confidence 3667777778888999988 689999887 42 2133233457889999999999874
No 203
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=79.03 E-value=2.3 Score=38.74 Aligned_cols=42 Identities=26% Similarity=0.186 Sum_probs=32.6
Q ss_pred CCCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 359 RGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 359 ~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
..+|.+||||-|||.+..++. .+--|+..|+.||..|...|.
T Consensus 259 ~~~Ts~p~IyA~GDv~~~~~~--~~~~A~~~G~~AA~~i~~~L~ 300 (304)
T 4fk1_A 259 FGRTSEKNIYLAGETTTQGPS--SLIIAASQGNKAAIAINSDIT 300 (304)
T ss_dssp TCBCSSTTEEECSHHHHTSCC--CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCEEEEeccCCCcch--HHHHHHHHHHHHHHHHHHHHh
Confidence 346789999999998764332 455688999999999988774
No 204
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=78.90 E-value=3 Score=38.53 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEE-EeC-CeEEecCEEEEccChh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDV-VCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v-~~~-g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+.+.+++.|+++++++ |.+|.. + +.++ | .++ ++++.+|.||+|+...
T Consensus 72 ~~~~~l~~~~~~~~v~~~~~~-v~~i~~-~--~~~~-v~~~~~g~~~~~d~lviAtG~~ 125 (335)
T 2a87_A 72 ELMDEMREQALRFGADLRMED-VESVSL-H--GPLK-SVVTADGQTHRARAVILAMGAA 125 (335)
T ss_dssp HHHHHHHHHHHHTTCEEECCC-EEEEEC-S--SSSE-EEEETTSCEEEEEEEEECCCEE
T ss_pred HHHHHHHHHHHHcCCEEEEee-EEEEEe-C--CcEE-EEEeCCCCEEEeCEEEECCCCC
Confidence 366777777788899999998 999987 3 3344 4 554 6789999999999874
No 205
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=78.61 E-value=2.6 Score=39.80 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|+++++|++|. . .. |.++ |+ +.+|.||+|++..
T Consensus 183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~--~--~~---v~~~~g~-i~~D~vi~a~G~~ 233 (367)
T 1xhc_A 183 EELSNMIKDMLEETGVKFFLNSELLEAN--E--EG---VLTNSGF-IEGKVKICAIGIV 233 (367)
T ss_dssp HHHHHHHHHHHHHTTEEEECSCCEEEEC--S--SE---EEETTEE-EECSCEEEECCEE
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEE--e--eE---EEECCCE-EEcCEEEECcCCC
Confidence 3467778888999999999999999997 2 32 3444 56 9999999999853
No 206
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=78.28 E-value=3.2 Score=37.65 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEE-EEeCCeEEecCEEEEccCh
Q 013390 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD-VVCGKETYSAGAVVLAVGI 218 (444)
Q Consensus 163 ~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~-v~~~g~~~~ad~VI~a~p~ 218 (444)
.+.+.+.+.+++.|++++++ .|.+| .+++.+.+.. +.+++ ++.+|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~ 116 (315)
T 3r9u_A 63 SFMAPWSEQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGS 116 (315)
T ss_dssp HHHHHHHHHHTTTCCEEECC-CEEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCE
T ss_pred HHHHHHHHHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCC
Confidence 47777778888889999998 89999 6541123432 33346 8999999999986
No 207
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=77.79 E-value=2.9 Score=42.73 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=39.1
Q ss_pred cCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccChhhHHHhhh
Q 013390 175 RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTLQELIK 226 (444)
Q Consensus 175 ~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p~~~~~~ll~ 226 (444)
.+++|++++.|++|..+++++++++|.+ +|+ ++.||.||+++..-...+++.
T Consensus 273 ~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~ 330 (623)
T 3pl8_A 273 ERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLV 330 (623)
T ss_dssp EEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHH
T ss_pred CCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHH
Confidence 3789999999999998753236777765 243 678999999999866555543
No 208
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=77.48 E-value=2.1 Score=37.44 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=30.4
Q ss_pred CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
+.+||||.+||.. +. +....|+.+|+.+|+.|+++++
T Consensus 196 t~~p~iya~G~~a--~~--g~~~~~~~~g~~~a~~i~~~l~ 232 (232)
T 2cul_A 196 KRLEGLYAVGLCV--RE--GDYARMSEEGKRLAEHLLHELG 232 (232)
T ss_dssp TTSBSEEECGGGT--SC--CCHHHHHHHHHHHHHHHHHHC-
T ss_pred cccccceeeeecc--cC--ccHHHHHHHHHHHHHHHHhhcC
Confidence 5789999999987 33 3667789999999999998763
No 209
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=76.60 E-value=3.5 Score=38.94 Aligned_cols=44 Identities=25% Similarity=0.213 Sum_probs=34.6
Q ss_pred HHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccCh
Q 013390 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI 218 (444)
Q Consensus 170 ~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~ 218 (444)
+.+++.|++++++++|+.|..+. .. |..+|+++.+|++|+||..
T Consensus 68 ~~~~~~~v~~~~g~~v~~id~~~--~~---V~~~g~~~~~d~lViATGs 111 (367)
T 1xhc_A 68 DWYRKRGIEIRLAEEAKLIDRGR--KV---VITEKGEVPYDTLVLATGA 111 (367)
T ss_dssp HHHHHHTEEEECSCCEEEEETTT--TE---EEESSCEEECSEEEECCCE
T ss_pred HHHHhCCcEEEECCEEEEEECCC--CE---EEECCcEEECCEEEECCCC
Confidence 34456799999999999998654 32 3356788999999999985
No 210
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=76.05 E-value=3.6 Score=42.05 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=36.8
Q ss_pred CCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCCCCccccccCCCCChHHHHH
Q 013390 363 SFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEAL 422 (444)
Q Consensus 363 ~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~~~~~~~~~~~~~~~~~~~~ 422 (444)
.++||||||+-+++ . +.|.|..+|..|+......+. +....++| .++++++++
T Consensus 383 ~~~gLf~AGqinGt--t--GYeEAaaqGl~AG~nAa~~~~-~~~~~~~~--r~~ayiG~l 435 (651)
T 3ces_A 383 FIQGLFFAGQINGT--T--GYEEAAAQGLLAGLNAARLSA-DKEGWAPA--RSQAYLGVL 435 (651)
T ss_dssp SSBTEEECSGGGTC--C--CHHHHHHHHHHHHHHHHHHHT-TCCCCCCC--TTTCHHHHH
T ss_pred CCCCeEEEEEecCC--c--ChHHHHHHHHHHHHHHHHHhc-CCCCCCCC--hhhhhhhhH
Confidence 57999999998754 2 345688888888866655543 24556777 556778765
No 211
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=75.55 E-value=6.9 Score=40.26 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCC--eEEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g--~~~~ad~VI~a~p~~ 219 (444)
....+.+.+++.|++|++++.|++|. + ++++ +..+| +++.+|.||++++..
T Consensus 575 ~~~~~~~~l~~~GV~v~~~~~v~~i~--~--~~v~-~~~~G~~~~i~~D~Vi~a~G~~ 627 (671)
T 1ps9_A 575 TGWIHRTTLLSRGVKMIPGVSYQKID--D--DGLH-VVINGETQVLAVDNVVICAGQE 627 (671)
T ss_dssp THHHHHHHHHHTTCEEECSCEEEEEE--T--TEEE-EEETTEEEEECCSEEEECCCEE
T ss_pred cHHHHHHHHHhcCCEEEeCcEEEEEe--C--CeEE-EecCCeEEEEeCCEEEECCCcc
Confidence 33455677888999999999999997 2 2354 33466 578999999999864
No 212
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=74.97 E-value=4.7 Score=36.14 Aligned_cols=41 Identities=17% Similarity=0.017 Sum_probs=34.1
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
.++..+|||.+||.+.. + .....|+..|+.||..|...+..
T Consensus 253 ~~t~~~~vya~GD~~~~--~-~~~~~A~~~g~~aa~~i~~~l~~ 293 (297)
T 3fbs_A 253 KQTTARGIFACGDVARP--A-GSVALAVGDGAMAGAAAHRSILF 293 (297)
T ss_dssp CBCSSTTEEECSGGGCT--T-CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCEEEEeecCCc--h-HHHHHHHHhHHHHHHHHHHHHhh
Confidence 45678999999998752 4 57788999999999999998854
No 213
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=74.83 E-value=3.2 Score=39.39 Aligned_cols=50 Identities=10% Similarity=0.021 Sum_probs=38.3
Q ss_pred hcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChhh-HHHhh
Q 013390 174 TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (444)
Q Consensus 174 ~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~ll 225 (444)
..+.+|++|++|.+++..++ ++|+ |++ +|++++||.||-|=..+. +.+.+
T Consensus 121 ~~~~~v~~~~~v~~~~~~~~-~~v~-v~~~dG~~~~adlvVgADG~~S~vR~~l 172 (412)
T 4hb9_A 121 GLANTIQWNKTFVRYEHIEN-GGIK-IFFADGSHENVDVLVGADGSNSKVRKQY 172 (412)
T ss_dssp TCTTTEECSCCEEEEEECTT-SCEE-EEETTSCEEEESEEEECCCTTCHHHHHH
T ss_pred hccceEEEEEEEEeeeEcCC-CeEE-EEECCCCEEEeeEEEECCCCCcchHHHh
Confidence 34668999999999998765 5576 555 588999999999988864 44444
No 214
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=74.40 E-value=5.3 Score=40.03 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC---C--eEEecCEEEEccChhh-HHHhhh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGIST-LQELIK 226 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~---g--~~~~ad~VI~a~p~~~-~~~ll~ 226 (444)
+-+.|.+.+++. |+++++|++|+.++ ++|+....+ | .+++||.||.|...+. +.+.+.
T Consensus 140 l~~~L~~~a~~~---v~~~~~v~~~~~~~--~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg 203 (549)
T 2r0c_A 140 LAPLLAEAVGER---LRTRSRLDSFEQRD--DHVRATITDLRTGATRAVHARYLVACDGASSPTRKALG 203 (549)
T ss_dssp HHHHHHHHHGGG---EECSEEEEEEEECS--SCEEEEEEETTTCCEEEEEEEEEEECCCTTCHHHHHHT
T ss_pred HHHHHHHHHHHh---cccCcEEEEEEEeC--CEEEEEEEECCCCCEEEEEeCEEEECCCCCcHHHHHcC
Confidence 555666666655 99999999999887 346633332 5 4789999999999864 455553
No 215
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=73.89 E-value=3.5 Score=37.55 Aligned_cols=52 Identities=8% Similarity=0.113 Sum_probs=36.3
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccCh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI 218 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~ 218 (444)
+.+.+.+.+++.+.++..++ |..+..+.+ . ...+..++.++.+|+||+|+..
T Consensus 68 l~~~~~~~~~~~~~~~~~~~-v~~~~~~~~-~-~~~~~~~~~~~~~~~liiATG~ 119 (314)
T 4a5l_A 68 LMMNMRTQSEKYGTTIITET-IDHVDFSTQ-P-FKLFTEEGKEVLTKSVIIATGA 119 (314)
T ss_dssp HHHHHHHHHHHTTCEEECCC-EEEEECSSS-S-EEEEETTCCEEEEEEEEECCCE
T ss_pred HHHHHHHHHhhcCcEEEEeE-EEEeecCCC-c-eEEEECCCeEEEEeEEEEcccc
Confidence 66677777778888877655 555555552 3 4323344788999999999986
No 216
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=73.75 E-value=5.1 Score=39.87 Aligned_cols=49 Identities=10% Similarity=0.245 Sum_probs=35.9
Q ss_pred HHHHHHHh-cCcEEEcCceeeEEEecCCCCeEEEEEe----CCe--EEecCEEEEccC
Q 013390 167 PWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVG 217 (444)
Q Consensus 167 ~l~~~l~~-~G~~v~~~~~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VI~a~p 217 (444)
.+.+.+++ .|++|++++.|++|..++ +++.+|.+ +|+ ++.+|.||++++
T Consensus 395 ~l~~~l~~~~gV~v~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D~vi~a~G 450 (521)
T 1hyu_A 395 VLQDKVRSLKNVDIILNAQTTEVKGDG--SKVVGLEYRDRVSGDIHSVALAGIFVQIG 450 (521)
T ss_dssp HHHHHHTTCTTEEEECSEEEEEEEECS--SSEEEEEEEETTTCCEEEEECSEEEECCC
T ss_pred HHHHHHhcCCCcEEEeCCEEEEEEcCC--CcEEEEEEEeCCCCceEEEEcCEEEECcC
Confidence 45556666 589999999999998765 45655554 243 678999999876
No 217
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=73.33 E-value=7.4 Score=38.63 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=41.1
Q ss_pred chhhHHHHHHHHHhcCcEEEcCceeeEEEecCC--CCeEEE-EE-eCC-e--EEecCEEEEccChh
Q 013390 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCCISD-VV-CGK-E--TYSAGAVVLAVGIS 219 (444)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~--~g~v~~-v~-~~g-~--~~~ad~VI~a~p~~ 219 (444)
...+.+.+.+.+++.|++|++++.|++|...++ .+.+.. +. .++ + ++.+|.||++++..
T Consensus 249 d~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~ 314 (519)
T 3qfa_A 249 DQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRD 314 (519)
T ss_dssp CHHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEE
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCc
Confidence 344777888888999999999999988876432 023331 12 234 2 56899999999864
No 218
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=73.17 E-value=4.8 Score=40.99 Aligned_cols=53 Identities=23% Similarity=0.175 Sum_probs=35.0
Q ss_pred CCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCCCCccccccCCCCChHHHHH
Q 013390 363 SFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEAL 422 (444)
Q Consensus 363 ~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~~~~~~~~~~~~~~~~~~~~ 422 (444)
.++||||||+-+++ . |+ |.|..+|..|+--....+. +.+..++| .++++++++
T Consensus 388 ~~~gLf~AGqinGt--~-Gy-eEAaaqGl~AG~nAa~~~~-~~~~~~~~--r~~ayig~l 440 (637)
T 2zxi_A 388 KIRGLFHAGNFNGT--T-GY-EEAAGQGIVAGINAALRAF-GKEPIYLR--RDESYIGVM 440 (637)
T ss_dssp SSBTEEECGGGGTB--C-SH-HHHHHHHHHHHHHHHHHHT-TCCCCCCC--TTTCHHHHH
T ss_pred CCCCEEEeeecCCc--c-hH-HHHHHHHHHHHHHHHHHhc-CCCCCCCC--hhheehhhH
Confidence 47999999998764 2 34 4577788877755554443 25556777 345777754
No 219
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=73.10 E-value=4.7 Score=38.98 Aligned_cols=45 Identities=24% Similarity=0.303 Sum_probs=35.5
Q ss_pred HHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 013390 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (444)
Q Consensus 170 ~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (444)
+.+++.|++++++++|+.|..++ .. |.+ +|+++.+|.||+|+...
T Consensus 68 ~~~~~~gv~~~~~~~v~~i~~~~--~~---v~~~~g~~~~~d~lviAtG~~ 113 (431)
T 1q1r_A 68 DAYAAQNIQLLGGTQVTAINRDR--QQ---VILSDGRALDYDRLVLATGGR 113 (431)
T ss_dssp HHHHHTTEEEECSCCEEEEETTT--TE---EEETTSCEEECSEEEECCCEE
T ss_pred HHHHhCCCEEEeCCEEEEEECCC--CE---EEECCCCEEECCEEEEcCCCC
Confidence 44567899999999999998765 33 444 47789999999999863
No 220
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=72.83 E-value=5.7 Score=38.81 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=30.8
Q ss_pred cCcEEEcCceeeEEEecCCCC-eEEEEEe----------------CC--eEEecCEEEEccCh
Q 013390 175 RGCEFLDGRRVTDFIYDEERC-CISDVVC----------------GK--ETYSAGAVVLAVGI 218 (444)
Q Consensus 175 ~G~~v~~~~~V~~I~~~~~~g-~v~~v~~----------------~g--~~~~ad~VI~a~p~ 218 (444)
.|++|++++.+.+|..+++ + ++.+|.+ +| +++.+|.||+++..
T Consensus 270 ~gv~~~~~~~~~~i~~~~~-~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~ 331 (460)
T 1cjc_A 270 RAWGLRFFRSPQQVLPSPD-GRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY 331 (460)
T ss_dssp EEEEEECSEEEEEEEECTT-SSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred ceEEEECCCChheEEcCCC-CceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCC
Confidence 7899999999999986542 3 4554443 23 46788888888764
No 221
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=72.42 E-value=3.8 Score=41.82 Aligned_cols=53 Identities=28% Similarity=0.308 Sum_probs=36.9
Q ss_pred CCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCCCCccccccCCCCChHHHHH
Q 013390 363 SFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEAL 422 (444)
Q Consensus 363 ~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~~~~~~~~~~~~~~~~~~~~ 422 (444)
.++||||||+-+.+ . +.+.|..+|..|+..+...+. +.+..++| .++++++++
T Consensus 377 ~~~gLf~AGqi~g~--~--Gy~eA~a~G~~AG~naa~~~~-~~~~~~~~--r~~~y~g~l 429 (641)
T 3cp8_A 377 PVENLFFAGQINGT--S--GYEEAAAQGLMAGINAVRKIL-GKELIVLG--RDQAYIGVL 429 (641)
T ss_dssp SSBTEEECSGGGTB--C--CHHHHHHHHHHHHHHHHHHHH-TCCCCCCC--TTTCHHHHH
T ss_pred CcCCEEEEEeecCC--c--cHHHHHHHHHHHHHHHHHHhc-CCCCCCCC--hhhhHHHHH
Confidence 57999999998764 2 345688889988877765543 24556777 445777755
No 222
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=72.32 E-value=5.3 Score=38.13 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=33.8
Q ss_pred CCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCCC
Q 013390 363 SFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDG 404 (444)
Q Consensus 363 ~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~~ 404 (444)
..+|+|.+||.+....+ .....|...|..+|+.|...++.+
T Consensus 298 ~~~~vfa~GD~~~~~~~-~~~~~A~~q~~~aa~~i~~~l~~~ 338 (409)
T 3h8l_A 298 KYDNVYAVGDANSMTVP-KLGYLAVMTGRIAAQHLANRLGVP 338 (409)
T ss_dssp SCTTEEECGGGBTTCCS-CCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCEEEeehhccCCCC-cHHHHHHHHHHHHHHHHHHHhcCC
Confidence 67999999998864445 466789999999999999999543
No 223
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=72.23 E-value=4.3 Score=37.51 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=32.6
Q ss_pred CCCCCCCEEEee--cccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 360 GFTSFPNLFMAG--DWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 360 ~~~~~~~l~laG--d~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
..+..+|+|.+| |.+. ..+ ..+.+|+..|+.+|+.|.+.+..
T Consensus 310 ~~t~~~~vya~Gd~d~~~-~~~-~~~~~A~~~g~~~a~~i~~~l~g 353 (357)
T 4a9w_A 310 RALAVPSVWLLGYGDWNG-MAS-ATLIGVTRYAREAVRQVTAYCAD 353 (357)
T ss_dssp BBSSCTTEEECSSCGGGS-TTC-SSTTTHHHHHHHHHHHHHHHTC-
T ss_pred cCCCCCCeEEeccccccc-cch-hhhhhhHHHHHHHHHHHHHHHHh
Confidence 456789999999 5443 223 56778999999999999999863
No 224
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=71.68 E-value=6.5 Score=35.70 Aligned_cols=55 Identities=16% Similarity=0.099 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
+.+...+.+.+.+.....+..|..+...++ +..+.+..+|+++++|+||+||...
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~g~~~~a~~liiATGs~ 116 (304)
T 4fk1_A 62 FKEIGLNEVMKYPSVHYYEKTVVMITKQST-GLFEIVTKDHTKYLAERVLLATGMQ 116 (304)
T ss_dssp HHHHHHHHHTTSTTEEEEECCEEEEEECTT-SCEEEEETTCCEEEEEEEEECCCCE
T ss_pred HHHHHHHHHHhcCCEEEEeeEEEEeeecCC-CcEEEEECCCCEEEeCEEEEccCCc
Confidence 444444555556665566666777766554 4454333458899999999999863
No 225
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=71.65 E-value=5.5 Score=32.85 Aligned_cols=41 Identities=29% Similarity=0.250 Sum_probs=31.9
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
.++..+++|.+||......+ ....|+..|..||..|...+.
T Consensus 131 ~~t~~~~i~a~GD~~~~~~~--~~~~A~~~g~~aa~~i~~~~~ 171 (180)
T 2ywl_A 131 GRTSYPRVYAAGVARGKVPG--HAIISAGDGAYVAVHLVSDLR 171 (180)
T ss_dssp CBCSSTTEEECGGGGTCCSC--CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCEEEeecccCcchh--hHHHHHHhHHHHHHHHHHHhh
Confidence 34677999999998763222 556799999999999988764
No 226
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=70.88 E-value=6.2 Score=38.49 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe---CCe--EEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~---~g~--~~~ad~VI~a~p~~ 219 (444)
+.+.+.+.++ ++|+++++|++|..+++ +++. |.+ +|+ ++.+|.||+|++..
T Consensus 216 ~~~~l~~~l~---v~i~~~~~v~~i~~~~~-~~v~-v~~~~~~G~~~~i~~D~vi~a~G~~ 271 (466)
T 3l8k_A 216 IVNTLLSILK---LNIKFNSPVTEVKKIKD-DEYE-VIYSTKDGSKKSIFTNSVVLAAGRR 271 (466)
T ss_dssp HHHHHHHHHC---CCEECSCCEEEEEEEET-TEEE-EEECCTTSCCEEEEESCEEECCCEE
T ss_pred HHHHHHhcCE---EEEEECCEEEEEEEcCC-CcEE-EEEEecCCceEEEEcCEEEECcCCC
Confidence 4555554443 89999999999997652 3455 444 344 78999999999864
No 227
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=70.19 E-value=5 Score=38.46 Aligned_cols=44 Identities=25% Similarity=0.254 Sum_probs=34.9
Q ss_pred HHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccChh
Q 013390 171 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (444)
Q Consensus 171 ~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (444)
.+++.|++++++++|+.|..++ .. |.+ +|+++.+|++|+|+...
T Consensus 66 ~~~~~~i~~~~~~~v~~id~~~--~~---v~~~~g~~~~~d~lvlAtG~~ 110 (410)
T 3ef6_A 66 WYGEARIDMLTGPEVTALDVQT--RT---ISLDDGTTLSADAIVIATGSR 110 (410)
T ss_dssp HHHHTTCEEEESCCEEEEETTT--TE---EEETTSCEEECSEEEECCCEE
T ss_pred HHHHCCCEEEeCCEEEEEECCC--CE---EEECCCCEEECCEEEEccCCc
Confidence 3456799999999999998765 32 344 47789999999999864
No 228
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=69.41 E-value=6.1 Score=39.45 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=40.8
Q ss_pred HHhcCcEEEcCceeeEEEecCC-CCeEEEEEe---CCe--EE---ecCEEEEccChhhHHHhhhc
Q 013390 172 MRTRGCEFLDGRRVTDFIYDEE-RCCISDVVC---GKE--TY---SAGAVVLAVGISTLQELIKN 227 (444)
Q Consensus 172 l~~~G~~v~~~~~V~~I~~~~~-~g~v~~v~~---~g~--~~---~ad~VI~a~p~~~~~~ll~~ 227 (444)
+++.|.+|++++.|++|..+++ ++++++|.+ +|+ ++ .++.||+|+......+|+..
T Consensus 204 ~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~sp~lL~~ 268 (536)
T 1ju2_A 204 GNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLL 268 (536)
T ss_dssp SCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHH
T ss_pred hcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcCcccCCHHHHHH
Confidence 3467899999999999998762 136888865 354 34 46899999998766666543
No 229
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=68.67 E-value=8.8 Score=38.76 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=40.2
Q ss_pred HhcCcEEEcCceeeEEEecCC--CCeEEEEEe---CCe--EEecC-EEEEccChhhHHHhhh
Q 013390 173 RTRGCEFLDGRRVTDFIYDEE--RCCISDVVC---GKE--TYSAG-AVVLAVGISTLQELIK 226 (444)
Q Consensus 173 ~~~G~~v~~~~~V~~I~~~~~--~g~v~~v~~---~g~--~~~ad-~VI~a~p~~~~~~ll~ 226 (444)
.+.+.+|++++.|++|..+.+ ++++++|.. +|+ ++.|+ .||++...-...+||-
T Consensus 238 ~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~ 299 (583)
T 3qvp_A 238 QRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILE 299 (583)
T ss_dssp TCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHH
T ss_pred cCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHH
Confidence 356789999999999999831 167888875 243 56786 5999999876666654
No 230
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=68.38 E-value=7 Score=38.41 Aligned_cols=47 Identities=13% Similarity=0.268 Sum_probs=35.5
Q ss_pred HHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC--CeEEecCEEEEccChh
Q 013390 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIS 219 (444)
Q Consensus 170 ~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~--g~~~~ad~VI~a~p~~ 219 (444)
+.+++.|++++++++|..|..++ +.|. +..+ ++++.+|++|+|+...
T Consensus 100 ~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~g~~~~~~~d~lviAtG~~ 148 (490)
T 2bc0_A 100 EELESLGAKVYMESPVQSIDYDA--KTVT-ALVDGKNHVETYDKLIFATGSQ 148 (490)
T ss_dssp HHHHHTTCEEETTCCEEEEETTT--TEEE-EEETTEEEEEECSEEEECCCEE
T ss_pred HHHHhCCCEEEeCCEEEEEECCC--CEEE-EEeCCcEEEEECCEEEECCCCC
Confidence 34456799999999999998766 4454 4313 3578999999999853
No 231
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=68.04 E-value=6.4 Score=42.48 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=36.9
Q ss_pred HHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC--------C--eEEecCEEEEccCh
Q 013390 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--------K--ETYSAGAVVLAVGI 218 (444)
Q Consensus 169 ~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~--------g--~~~~ad~VI~a~p~ 218 (444)
.+.+++.|++|++++.|.+|..+++ +++..|.+. | +++.+|.||++++.
T Consensus 323 ~~~l~~~GV~v~~~~~v~~i~~~~~-~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~ 381 (965)
T 2gag_A 323 AAQAVADGVQVISGSVVVDTEADEN-GELSAIVVAELDEARELGGTQRFEADVLAVAGGF 381 (965)
T ss_dssp HHHHHHTTCCEEETEEEEEEEECTT-SCEEEEEEEEECTTCCEEEEEEEECSEEEEECCE
T ss_pred HHHHHhCCeEEEeCCEeEEEeccCC-CCEEEEEEEeccccCCCCceEEEEcCEEEECCCc
Confidence 5667889999999999999987412 345444432 3 57899999999975
No 232
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=67.06 E-value=6.1 Score=36.42 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=32.0
Q ss_pred CCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 361 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 361 ~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
++..+|+|.+||.+.... .....|+..|..||..|...+.
T Consensus 277 ~t~~~~iya~GD~~~~~~--~~~~~A~~~g~~aA~~i~~~l~ 316 (335)
T 2a87_A 277 STSLPGVFAAGDLVDRTY--RQAVTAAGSGCAAAIDAERWLA 316 (335)
T ss_dssp BCSSTTEEECGGGTCCSC--CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEeeecCCccH--HHHHHHHHhHHHHHHHHHHHhh
Confidence 467899999999886422 3567789999999999988874
No 233
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=65.94 E-value=10 Score=35.73 Aligned_cols=45 Identities=22% Similarity=0.166 Sum_probs=35.4
Q ss_pred HHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChh
Q 013390 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (444)
Q Consensus 170 ~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~ 219 (444)
+.+++.|++++++++|+.|..++ .. |.++++++.+|++|+|+...
T Consensus 68 ~~~~~~~v~~~~~~~v~~i~~~~--~~---v~~~~~~~~~d~lviAtG~~ 112 (384)
T 2v3a_A 68 AMAEQLNARILTHTRVTGIDPGH--QR---IWIGEEEVRYRDLVLAWGAE 112 (384)
T ss_dssp HHHHHTTCEEECSCCCCEEEGGG--TE---EEETTEEEECSEEEECCCEE
T ss_pred HHHHhCCcEEEeCCEEEEEECCC--CE---EEECCcEEECCEEEEeCCCC
Confidence 33457789999999999998765 33 45566789999999999863
No 234
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=65.77 E-value=4.8 Score=41.98 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe---CC-eE------------------EecCEEEEccChh
Q 013390 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK-ET------------------YSAGAVVLAVGIS 219 (444)
Q Consensus 166 ~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~---~g-~~------------------~~ad~VI~a~p~~ 219 (444)
..+.+.+++.|++|++++.|++|..+ +++ +.. ++ ++ +.+|.||++++..
T Consensus 575 ~~~~~~l~~~GV~i~~~~~v~~i~~~----~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~ 645 (729)
T 1o94_A 575 PNMMRRLHELHVEELGDHFCSRIEPG----RME-IYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRH 645 (729)
T ss_dssp HHHHHHHHHTTCEEECSEEEEEEETT----EEE-EEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEE
T ss_pred HHHHHHHHhCCCEEEcCcEEEEEECC----eEE-EEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCC
Confidence 45667788899999999999999732 243 222 22 22 8999999999853
No 235
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=64.60 E-value=9.4 Score=37.19 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=33.8
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
.++..+|||.+||.+. .+ ..+..|+..|+.||+.|...+..
T Consensus 405 ~~Ts~~~VfA~GD~~~--g~-~~v~~A~~~G~~aA~~i~~~L~~ 445 (456)
T 2vdc_G 405 KMTNMDGVFAAGDIVR--GA-SLVVWAIRDGRDAAEGIHAYAKA 445 (456)
T ss_dssp CBCSSTTEEECGGGGS--SC-CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCEEEeccccC--Cc-hHHHHHHHHHHHHHHHHHHHhhc
Confidence 4577899999999875 24 57788999999999999998853
No 236
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=64.52 E-value=14 Score=36.92 Aligned_cols=43 Identities=28% Similarity=0.289 Sum_probs=31.4
Q ss_pred CCCCCCCEEEeecccccC-C-----CcchhhHHHHHHHHHHHHHHHHhC
Q 013390 360 GFTSFPNLFMAGDWITTR-H-----GSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~-~-----~~~~~egAv~SG~~aA~~il~~lg 402 (444)
.+++++|||-||+...++ | ++.++-.|+..|+.|++.+.+...
T Consensus 363 ~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~~ 411 (540)
T 1chu_A 363 GRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRMP 411 (540)
T ss_dssp CBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCccCCEEeccccccccccCCCcCcchhHHHHHHHHHHHHHHHHHhcc
Confidence 347899999999976332 2 113566688999999999987764
No 237
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=64.36 E-value=9.7 Score=37.60 Aligned_cols=55 Identities=15% Similarity=0.003 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCC-----eEEEEEeC----C--eEEecCEEEEccCh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC-----CISDVVCG----K--ETYSAGAVVLAVGI 218 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g-----~v~~v~~~----g--~~~~ad~VI~a~p~ 218 (444)
+.+.+....++.+..|++|++|++|+...+++ ..+.|++. | +++.|++||+|++.
T Consensus 147 ~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~ 212 (501)
T 4b63_A 147 FEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGG 212 (501)
T ss_dssp HHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred HHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCC
Confidence 66666665666677899999999999765311 12335542 2 46899999999983
No 238
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=64.03 E-value=7.4 Score=39.27 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccCh
Q 013390 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGI 218 (444)
Q Consensus 166 ~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VI~a~p~ 218 (444)
..+....+..|.++++++.|++|..++ +.++ +.. +|+ ++.+|++|+|+..
T Consensus 97 ~~~~~~~~~~gi~v~~~~~V~~id~~~--~~v~-v~~~~~g~~~~~~~d~lviAtG~ 150 (588)
T 3ics_A 97 QTVERMSKRFNLDIRVLSEVVKINKEE--KTIT-IKNVTTNETYNEAYDVLILSPGA 150 (588)
T ss_dssp SCHHHHHHHTTCEEECSEEEEEEETTT--TEEE-EEETTTCCEEEEECSEEEECCCE
T ss_pred cCHHHHHHhcCcEEEECCEEEEEECCC--CEEE-EeecCCCCEEEEeCCEEEECCCC
Confidence 334444557799999999999999876 5554 443 354 6899999999985
No 239
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=63.82 E-value=12 Score=36.07 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=35.4
Q ss_pred HHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccChh
Q 013390 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIS 219 (444)
Q Consensus 170 ~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VI~a~p~~ 219 (444)
+.+++.|+++++++.|..|..++ +.|. +.. +|+ ++.+|++|+|+...
T Consensus 64 ~~~~~~gv~~~~~~~v~~i~~~~--~~v~-~~~~~~g~~~~~~~d~lviAtG~~ 114 (447)
T 1nhp_A 64 EKMESRGVNVFSNTEITAIQPKE--HQVT-VKDLVSGEERVENYDKLIISPGAV 114 (447)
T ss_dssp HHHHHTTCEEEETEEEEEEETTT--TEEE-EEETTTCCEEEEECSEEEECCCEE
T ss_pred HHHHHCCCEEEECCEEEEEeCCC--CEEE-EEecCCCceEEEeCCEEEEcCCCC
Confidence 44556799999999999998766 5554 444 254 48999999999853
No 240
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=63.80 E-value=11 Score=36.64 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=35.9
Q ss_pred HHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--CCeEEecCEEEEccCh
Q 013390 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKETYSAGAVVLAVGI 218 (444)
Q Consensus 170 ~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~g~~~~ad~VI~a~p~ 218 (444)
+.+++.|.+++++++|.+|..++ +.+. +.. +++++.+|++|+|+..
T Consensus 66 ~~~~~~gi~~~~~~~V~~id~~~--~~v~-v~~~~~~~~~~~d~lviAtG~ 113 (452)
T 3oc4_A 66 EELRRQKIQLLLNREVVAMDVEN--QLIA-WTRKEEQQWYSYDKLILATGA 113 (452)
T ss_dssp HHHHHTTEEEECSCEEEEEETTT--TEEE-EEETTEEEEEECSEEEECCCC
T ss_pred HHHHHCCCEEEECCEEEEEECCC--CEEE-EEecCceEEEEcCEEEECCCc
Confidence 44567899999999999999876 4454 332 3567899999999986
No 241
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=62.75 E-value=12 Score=36.19 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=35.4
Q ss_pred HHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--C--CeEEecCEEEEccCh
Q 013390 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G--KETYSAGAVVLAVGI 218 (444)
Q Consensus 170 ~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~--g~~~~ad~VI~a~p~ 218 (444)
+.+++.|++++++++|..|..++ +.|. +.. + ++++++|++|+|+..
T Consensus 66 ~~~~~~gv~~~~~~~v~~i~~~~--~~v~-v~~~~~g~~~~~~~d~lviAtGs 115 (452)
T 2cdu_A 66 EELSNLGANVQMRHQVTNVDPET--KTIK-VKDLITNEEKTEAYDKLIMTTGS 115 (452)
T ss_dssp HHHHHTTCEEEESEEEEEEEGGG--TEEE-EEETTTCCEEEEECSEEEECCCE
T ss_pred HHHHHcCCEEEeCCEEEEEEcCC--CEEE-EEecCCCceEEEECCEEEEccCC
Confidence 34557799999999999998776 4554 443 1 457899999999985
No 242
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=62.45 E-value=6.7 Score=39.60 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=38.9
Q ss_pred hcCcEEEcCceeeEEEecCCCCeEEEEEe--C-Ce--EEec-CEEEEccChhhHHHhhh
Q 013390 174 TRGCEFLDGRRVTDFIYDEERCCISDVVC--G-KE--TYSA-GAVVLAVGISTLQELIK 226 (444)
Q Consensus 174 ~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~-g~--~~~a-d~VI~a~p~~~~~~ll~ 226 (444)
+.+.+|++++.|++|..+++++++++|.. . |+ ++.| +.||++...-...+||-
T Consensus 218 r~Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~sp~lL~ 276 (577)
T 3q9t_A 218 KPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLM 276 (577)
T ss_dssp CTTEEEECSEEEEEEEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred CCCeEEEcCcEEEEEEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCChHHHH
Confidence 45789999999999999832267888876 2 54 4567 46999998766555543
No 243
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=62.24 E-value=8.4 Score=36.84 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=35.8
Q ss_pred HHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 013390 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI 218 (444)
Q Consensus 169 ~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~ 218 (444)
.+.+++.|++++++++|++|..++ .. |.+ +|+++.+|++|+|+..
T Consensus 72 ~~~~~~~~i~~~~~~~v~~id~~~--~~---v~~~~g~~~~~d~lvlAtG~ 117 (415)
T 3lxd_A 72 AQFWEDKAVEMKLGAEVVSLDPAA--HT---VKLGDGSAIEYGKLIWATGG 117 (415)
T ss_dssp HHHHHHTTEEEEETCCEEEEETTT--TE---EEETTSCEEEEEEEEECCCE
T ss_pred HHHHHHCCcEEEeCCEEEEEECCC--CE---EEECCCCEEEeeEEEEccCC
Confidence 455667899999999999998765 32 444 4778999999999985
No 244
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=62.05 E-value=18 Score=39.23 Aligned_cols=48 Identities=23% Similarity=0.237 Sum_probs=36.3
Q ss_pred HHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe--------------CC--eEEecCEEEEccCh
Q 013390 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--------------GK--ETYSAGAVVLAVGI 218 (444)
Q Consensus 169 ~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--------------~g--~~~~ad~VI~a~p~ 218 (444)
.+.+++.|+++++++.|.+|..++ ++|++|.+ .| .++.||.||+|++.
T Consensus 377 ~~~~~~~Gv~~~~~~~~~~i~~~~--g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~ 440 (1025)
T 1gte_A 377 VELAKEEKCEFLPFLSPRKVIVKG--GRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS 440 (1025)
T ss_dssp HHHHHHTTCEEECSEEEEEEEEET--TEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred HHHHHHcCCEEEeCCCceEEEccC--CeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCC
Confidence 355677899999999999998754 56665543 12 36899999999975
No 245
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=61.81 E-value=9.5 Score=36.55 Aligned_cols=91 Identities=16% Similarity=0.020 Sum_probs=47.2
Q ss_pred HHHHhhccCCCCCeeeeEEEEEeCCCccccCCCCCCCCCCCC-CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHH
Q 013390 320 SYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 398 (444)
Q Consensus 320 ~~l~~~~p~~~~~~~~~~~v~r~~~~~~~~~pg~~~~~p~~~-~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il 398 (444)
..+-+..|++..+.++..-+.. .+ .+...|..+ .+..+ ..++||||||+-+++ . |+ +.|..+|..|+.-+.
T Consensus 287 ~~~~r~IpGLE~a~~~r~G~~~-ey-~~i~sP~~L--~~tle~k~~~~Lf~AGqi~G~--~-Gy-~eAaa~Gl~AG~naa 358 (443)
T 3g5s_A 287 KRLIQMIPGLENAEIVRYGVMH-RN-TYLNAPRLL--GETLEFREAEGLYAAGVLAGV--E-GY-LESAATGFLAGLNAA 358 (443)
T ss_dssp HHHHTTSTTCTTCCEEECCEEE-EE-EEECHHHHB--CTTSEETTEEEEEECGGGGTB--C-SH-HHHHHHHHHHHHHHH
T ss_pred HHHHhcCcChhhCeeeeCcEee-cC-ceecChhHh--ChhceecCCCCEEECcccccc--H-HH-HHHHHhHHHHHHHHH
Confidence 3455778998766554321110 00 011112111 12223 357999999998854 3 34 557778888876655
Q ss_pred HHhCCCCccccccCCCCChHHHHH
Q 013390 399 DYLGDGSFSKIIPVEEDEPHIEAL 422 (444)
Q Consensus 399 ~~lg~~~~~~~~~~~~~~~~~~~~ 422 (444)
..+. +....++|. +.+++++
T Consensus 359 ~~~~-g~~p~~l~r---~~yiGvL 378 (443)
T 3g5s_A 359 RKAL-GLPPVAPPE---ESMLGGL 378 (443)
T ss_dssp HHHT-TCCCCCCCT---TSHHHHH
T ss_pred HHhc-CCCCCCCCh---hhhhhHH
Confidence 5543 234445553 2466643
No 246
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=61.66 E-value=6.6 Score=37.54 Aligned_cols=41 Identities=29% Similarity=0.340 Sum_probs=33.0
Q ss_pred HhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 013390 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI 218 (444)
Q Consensus 173 ~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~ 218 (444)
++.|++++++++|+.|..++ .. |.+ +|+++.+|++|+|+..
T Consensus 70 ~~~~v~~~~~~~v~~i~~~~--~~---v~~~~g~~~~~d~lviAtG~ 111 (408)
T 2gqw_A 70 RAPEVEWLLGVTAQSFDPQA--HT---VALSDGRTLPYGTLVLATGA 111 (408)
T ss_dssp TSCSCEEEETCCEEEEETTT--TE---EEETTSCEEECSEEEECCCE
T ss_pred HHCCCEEEcCCEEEEEECCC--CE---EEECCCCEEECCEEEECCCC
Confidence 45689999999999998754 33 344 4778999999999986
No 247
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=61.13 E-value=7.9 Score=39.14 Aligned_cols=54 Identities=19% Similarity=0.205 Sum_probs=39.4
Q ss_pred HhcCcEEEcCceeeEEEecCCC--CeEEEEEe---CCe--EEec-CEEEEccChhhHHHhhh
Q 013390 173 RTRGCEFLDGRRVTDFIYDEER--CCISDVVC---GKE--TYSA-GAVVLAVGISTLQELIK 226 (444)
Q Consensus 173 ~~~G~~v~~~~~V~~I~~~~~~--g~v~~v~~---~g~--~~~a-d~VI~a~p~~~~~~ll~ 226 (444)
++.+.+|++++.|++|..++++ +++++|.. +|+ ++.| +.||+|+..-...+|+-
T Consensus 242 ~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL~ 303 (587)
T 1gpe_A 242 QRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILE 303 (587)
T ss_dssp TCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHH
T ss_pred cCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHHH
Confidence 3557899999999999987421 36777764 354 5678 88999999865555543
No 248
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=60.77 E-value=14 Score=36.98 Aligned_cols=44 Identities=14% Similarity=-0.045 Sum_probs=33.9
Q ss_pred HHhcCcEEEcCceeeEEEecCCCCeEEEEEe-C-C--eEEecCEEEEccCh
Q 013390 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G-K--ETYSAGAVVLAVGI 218 (444)
Q Consensus 172 l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~-g--~~~~ad~VI~a~p~ 218 (444)
.+..|++++++++|++|..++ +.++ +.. . | .++.+|+||+|+..
T Consensus 68 ~~~~~i~~~~~~~V~~id~~~--~~v~-~~~~~~g~~~~~~~d~lviAtG~ 115 (565)
T 3ntd_A 68 KARFNVEVRVKHEVVAIDRAA--KLVT-VRRLLDGSEYQESYDTLLLSPGA 115 (565)
T ss_dssp HHHHCCEEETTEEEEEEETTT--TEEE-EEETTTCCEEEEECSEEEECCCE
T ss_pred HHhcCcEEEECCEEEEEECCC--CEEE-EEecCCCCeEEEECCEEEECCCC
Confidence 345789999999999999876 5554 443 2 3 37899999999986
No 249
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=60.34 E-value=16 Score=35.67 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=33.6
Q ss_pred hcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccChh
Q 013390 174 TRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIS 219 (444)
Q Consensus 174 ~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VI~a~p~~ 219 (444)
..|+++++++.|..|..++ +.|. +.. +|+ ++.+|++|+|+...
T Consensus 105 ~~gv~~~~~~~v~~i~~~~--~~v~-v~~~~~g~~~~~~~d~lviAtG~~ 151 (480)
T 3cgb_A 105 KYGIDAKVRHEVTKVDTEK--KIVY-AEHTKTKDVFEFSYDRLLIATGVR 151 (480)
T ss_dssp TTCCEEESSEEEEEEETTT--TEEE-EEETTTCCEEEEECSEEEECCCEE
T ss_pred hcCCEEEeCCEEEEEECCC--CEEE-EEEcCCCceEEEEcCEEEECCCCc
Confidence 4489999999999998766 4564 444 355 78999999999853
No 250
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=59.99 E-value=13 Score=35.97 Aligned_cols=47 Identities=15% Similarity=0.066 Sum_probs=34.8
Q ss_pred HHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC----CeEEecCEEEEccChh
Q 013390 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KETYSAGAVVLAVGIS 219 (444)
Q Consensus 170 ~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~----g~~~~ad~VI~a~p~~ 219 (444)
+.+++.|++++++++|.+|..+. ..+. +... +.++.+|++|+|+...
T Consensus 65 ~~~~~~~i~~~~~~~V~~id~~~--~~~~-~~~~~~~~~~~~~yd~lVIATGs~ 115 (437)
T 4eqs_A 65 KFYDRKQITVKTYHEVIAINDER--QTVS-VLNRKTNEQFEESYDKLILSPGAS 115 (437)
T ss_dssp HHHHHHCCEEEETEEEEEEETTT--TEEE-EEETTTTEEEEEECSEEEECCCEE
T ss_pred HHHHhcCCEEEeCCeEEEEEccC--cEEE-EEeccCCceEEEEcCEEEECCCCc
Confidence 34457799999999999998776 4444 3332 2467899999999864
No 251
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=59.86 E-value=17 Score=36.67 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHhcCcEEEcCceeeEEEec------C-CCCeEEE-EE-eCCeEEe--cCEEEEccChh
Q 013390 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYD------E-ERCCISD-VV-CGKETYS--AGAVVLAVGIS 219 (444)
Q Consensus 162 ~~l~~~l~~~l~~~G~~v~~~~~V~~I~~~------~-~~g~v~~-v~-~~g~~~~--ad~VI~a~p~~ 219 (444)
..+.+.+.+.+++.|++|++++.|++|... + +.+++.. +. .+|+++. +|.||+|++..
T Consensus 326 ~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~ 394 (598)
T 2x8g_A 326 QQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGRE 394 (598)
T ss_dssp HHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEE
T ss_pred HHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCc
Confidence 346677778888899999999999888642 1 1133431 12 2465554 99999999864
No 252
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=59.68 E-value=9.3 Score=38.41 Aligned_cols=55 Identities=20% Similarity=0.132 Sum_probs=39.4
Q ss_pred HhcCcEEEcCceeeEEEec---CCCCeEEEEEeC---C-e--EEec-CEEEEccChhhHHHhhhc
Q 013390 173 RTRGCEFLDGRRVTDFIYD---EERCCISDVVCG---K-E--TYSA-GAVVLAVGISTLQELIKN 227 (444)
Q Consensus 173 ~~~G~~v~~~~~V~~I~~~---~~~g~v~~v~~~---g-~--~~~a-d~VI~a~p~~~~~~ll~~ 227 (444)
.+.+.+|++++.|++|..+ ++.+++++|... | + ++.| +.||++...-...+||--
T Consensus 219 ~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL~l 283 (566)
T 3fim_B 219 SRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQL 283 (566)
T ss_dssp TCTTEEEESSCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHHHH
T ss_pred cCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcCChHHHHh
Confidence 4567899999999999997 211467777652 4 3 5677 569999988766666543
No 253
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=58.70 E-value=9.4 Score=36.96 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=30.1
Q ss_pred CCCCCEEEeeccccc-CCCc-chhhHHHHHHHHHHHHHHHHh
Q 013390 362 TSFPNLFMAGDWITT-RHGS-WSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 362 ~~~~~l~laGd~~~~-~~~~-~~~egAv~SG~~aA~~il~~l 401 (444)
.++||||+||+-+.- ++.+ -.+-.|+.+|+.|++.+.+..
T Consensus 402 ~~i~GLy~aGEv~~v~g~~GG~~l~~a~~~G~~Ag~~aa~~~ 443 (447)
T 2i0z_A 402 KFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGENA 443 (447)
T ss_dssp SSSBTEEECGGGBSCBCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEEeeccCccCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 478999999987652 3322 345779999999999987664
No 254
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=58.31 E-value=9.3 Score=36.80 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=32.8
Q ss_pred HHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 172 l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
+++.|++++.+ .|++|..++ .. |+++ |+++.+|++|+|+...
T Consensus 66 ~~~~gv~~i~~-~v~~Id~~~--~~---V~~~~g~~i~YD~LViAtG~~ 108 (430)
T 3hyw_A 66 LPKFNIEFINE-KAESIDPDA--NT---VTTQSGKKIEYDYLVIATGPK 108 (430)
T ss_dssp GGGGTEEEECS-CEEEEETTT--TE---EEETTCCEEECSEEEECCCCE
T ss_pred HHHCCcEEEEe-EEEEEECCC--CE---EEECCCCEEECCEEEEeCCCC
Confidence 45678999876 699998766 43 4554 7889999999999974
No 255
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=56.06 E-value=12 Score=36.53 Aligned_cols=50 Identities=18% Similarity=0.060 Sum_probs=33.8
Q ss_pred HHHHHHHHh------cCcEEEcCceeeEEEecCCCCeEEEEEe-----------------CC--eEEecCEEEEccCh
Q 013390 166 EPWMDSMRT------RGCEFLDGRRVTDFIYDEERCCISDVVC-----------------GK--ETYSAGAVVLAVGI 218 (444)
Q Consensus 166 ~~l~~~l~~------~G~~v~~~~~V~~I~~~~~~g~v~~v~~-----------------~g--~~~~ad~VI~a~p~ 218 (444)
+.+.+.+++ .|++|++++.|.+|..++ ++.+|.+ +| +++.+|.||++++.
T Consensus 250 ~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~---~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~ 324 (456)
T 1lqt_A 250 KVLRGYADREPRPGHRRMVFRFLTSPIEIKGKR---KVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGY 324 (456)
T ss_dssp HHHHHHHTCC-CTTSEEEEEECSEEEEEEECSS---SCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCE
T ss_pred HHHHHHhhcCCCCCCceEEEEeCCCCeEEecCC---cEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEcccc
Confidence 344444545 789999999999998542 3433332 23 35789999999875
No 256
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=55.56 E-value=7.2 Score=38.06 Aligned_cols=47 Identities=23% Similarity=0.264 Sum_probs=33.5
Q ss_pred HHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-------------------CC--eEEecCEEEEccChh
Q 013390 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-------------------GK--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 170 ~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-------------------~g--~~~~ad~VI~a~p~~ 219 (444)
+.+++.|+++++++.|.+|..+ |+|++|.+ +| .++.+|.||+|++..
T Consensus 310 ~~~~~~Gv~~~~~~~~~~i~~~---g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~ 377 (456)
T 2vdc_G 310 AHAEEEGVEFIWQAAPEGFTGD---TVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFE 377 (456)
T ss_dssp HHHHHTTCEEECCSSSCCEEEE---EEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEE
T ss_pred HHHHHCCCEEEeCCCceEEeCC---CcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCC
Confidence 4566789999999999999742 44432221 22 468999999999863
No 257
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=55.24 E-value=14 Score=35.92 Aligned_cols=42 Identities=21% Similarity=0.197 Sum_probs=31.0
Q ss_pred hcCcEEEcCceeeEEEecCCCCeEEEEEe--CCe--EEecCEEEEccCh
Q 013390 174 TRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGI 218 (444)
Q Consensus 174 ~~G~~v~~~~~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VI~a~p~ 218 (444)
..|.+++++++|++|..++ +.+. +.. +|+ ++.+|++|+|+..
T Consensus 78 ~~gi~~~~~~~V~~id~~~--~~v~-~~~~~~g~~~~~~~d~lviAtG~ 123 (472)
T 3iwa_A 78 NKDVEALVETRAHAIDRAA--HTVE-IENLRTGERRTLKYDKLVLALGS 123 (472)
T ss_dssp ---CEEECSEEEEEEETTT--TEEE-EEETTTCCEEEEECSEEEECCCE
T ss_pred hcCcEEEECCEEEEEECCC--CEEE-EeecCCCCEEEEECCEEEEeCCC
Confidence 4688999999999999876 5454 443 244 7899999999985
No 258
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=54.99 E-value=22 Score=34.09 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=33.3
Q ss_pred CCC-CCCCEEEeecccccC----------CCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 360 GFT-SFPNLFMAGDWITTR----------HGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 360 ~~~-~~~~l~laGd~~~~~----------~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
.++ ..+|||.+||.+... .| -+...|+..|..+|+.|...+..
T Consensus 281 l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~p-k~~~~A~~~g~~aa~ni~~~l~g 334 (430)
T 3h28_A 281 FQNPTYKNIFGVGVVTAIPPIEKTPIPTGVP-KTGMMIEQMAMAVAHNIVNDIRN 334 (430)
T ss_dssp SBCSSSTTEEECSTTBCCCCSSCCSSCCCCC-CCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCEEEEEeeeccCCccCCCCCCCCC-chHHHHHHHHHHHHHHHHHHhcC
Confidence 344 689999999987632 23 35677999999999999998853
No 259
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=54.28 E-value=8.4 Score=37.93 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=32.5
Q ss_pred hcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 013390 174 TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI 218 (444)
Q Consensus 174 ~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~ 218 (444)
+.|++++++++|.+|..++ .. |.+ +|+++.+|++|+|+..
T Consensus 102 ~~gv~~~~g~~v~~id~~~--~~---V~~~~g~~i~yd~lviATGs 142 (493)
T 1m6i_A 102 NGGVAVLTGKKVVQLDVRD--NM---VKLNDGSQITYEKCLIATGG 142 (493)
T ss_dssp TCEEEEEETCCEEEEEGGG--TE---EEETTSCEEEEEEEEECCCE
T ss_pred cCCeEEEcCCEEEEEECCC--CE---EEECCCCEEECCEEEECCCC
Confidence 4688999999999998765 43 344 4778999999999985
No 260
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=53.37 E-value=27 Score=31.35 Aligned_cols=40 Identities=23% Similarity=0.116 Sum_probs=30.5
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHh
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~l 401 (444)
.+|.+||||-|||.+...+ ..+.-|+..|..||..+.+.|
T Consensus 272 ~~Ts~pgIyA~GDv~~~~~--~~~~~A~~~G~~AA~~~~~yL 311 (314)
T 4a5l_A 272 PKTSVDGVFACGDVCDRVY--RQAIVAAGSGCMAALSCEKWL 311 (314)
T ss_dssp TBCSSTTEEECSTTTCSSC--CCHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCEEEEEeccCCcc--hHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999875322 234458889999999988776
No 261
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=52.69 E-value=23 Score=34.19 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-C-eEEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K-ETYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g-~~~~ad~VI~a~p~~ 219 (444)
+.+.+.+.+++.|++++.++.+. + +. +.+. |.+. | +++.+|+||+|+...
T Consensus 93 l~~~~~~~~~~~gv~~~~g~~~~-i--d~--~~v~-V~~~~G~~~i~~d~lViATGs~ 144 (455)
T 1ebd_A 93 LTGGVEGLLKGNKVEIVKGEAYF-V--DA--NTVR-VVNGDSAQTYTFKNAIIATGSR 144 (455)
T ss_dssp HHHHHHHHHHTTTCEEEESEEEE-E--ET--TEEE-EEETTEEEEEECSEEEECCCEE
T ss_pred HHHHHHHHHHhCCCEEEEEEEEE-c--cC--CeEE-EEeCCCcEEEEeCEEEEecCCC
Confidence 34445566777899999999764 3 33 3454 5554 5 578999999999863
No 262
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=52.51 E-value=9.7 Score=36.34 Aligned_cols=37 Identities=8% Similarity=0.161 Sum_probs=26.9
Q ss_pred CCCCCEEEeeccccc-CCCcc-hhhHHHHHHHHHHHHHH
Q 013390 362 TSFPNLFMAGDWITT-RHGSW-SQERSYVTGLEAANRVV 398 (444)
Q Consensus 362 ~~~~~l~laGd~~~~-~~~~~-~~egAv~SG~~aA~~il 398 (444)
+.+|||||||+-+.- ++.+| .+..|..||+.|++.+.
T Consensus 361 ~~~~gly~~GE~ldv~g~~GGynlq~a~~sg~~ag~~~~ 399 (401)
T 2gqf_A 361 NQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSIS 399 (401)
T ss_dssp SSSTTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEEeEEeccCCCCHHHHHHHHHHHHHHHHHh
Confidence 468999999987652 33322 34569999999998774
No 263
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=52.06 E-value=15 Score=36.25 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=39.5
Q ss_pred cCcEEEcCceeeEEEecCCCCeEEEEEeC--C--eEEecCEEEEccChhhHHHhhhc
Q 013390 175 RGCEFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGISTLQELIKN 227 (444)
Q Consensus 175 ~G~~v~~~~~V~~I~~~~~~g~v~~v~~~--g--~~~~ad~VI~a~p~~~~~~ll~~ 227 (444)
...+|.+++.|++|..++ +++++|... + .++.|+.||++...=...+||-.
T Consensus 224 ~nl~v~~~~~v~~i~~~~--~~a~gv~~~~~~~~~~~~a~~VILsAGai~SP~LLl~ 278 (526)
T 3t37_A 224 KNLTILTGSRVRRLKLEG--NQVRSLEVVGRQGSAEVFADQIVLCAGALESPALLMR 278 (526)
T ss_dssp TTEEEECSCEEEEEEEET--TEEEEEEEEETTEEEEEEEEEEEECSHHHHHHHHHHH
T ss_pred CCeEEEeCCEEEEEEecC--CeEEEEEEEecCceEEEeecceEEcccccCCcchhhh
Confidence 457999999999999987 678877653 3 35688999999987666666543
No 264
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=51.98 E-value=20 Score=33.97 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=34.6
Q ss_pred HHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-CCeEEecCEEEEccCh
Q 013390 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI 218 (444)
Q Consensus 169 ~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VI~a~p~ 218 (444)
.+.+.+.|+++++ ++|++|..++ .. |.+ +|+++.+|++|+|+..
T Consensus 64 ~~~~~~~~i~~~~-~~v~~id~~~--~~---v~~~~g~~~~~d~lvlAtG~ 108 (404)
T 3fg2_P 64 EKFFQDQAIELIS-DRMVSIDREG--RK---LLLASGTAIEYGHLVLATGA 108 (404)
T ss_dssp HHHHHHTTEEEEC-CCEEEEETTT--TE---EEESSSCEEECSEEEECCCE
T ss_pred HHHHHhCCCEEEE-EEEEEEECCC--CE---EEECCCCEEECCEEEEeeCC
Confidence 4455678999999 9999998765 42 344 4778999999999985
No 265
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=51.49 E-value=12 Score=37.45 Aligned_cols=46 Identities=11% Similarity=0.313 Sum_probs=34.0
Q ss_pred HHHHHhcCcEEEc--CceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 013390 169 MDSMRTRGCEFLD--GRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (444)
Q Consensus 169 ~~~l~~~G~~v~~--~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~ 221 (444)
.+.+.+.++++.. +++|++|..+ | | +..+| ++++|.||+||.....
T Consensus 345 ~~al~~~nV~lv~~~~~~I~~it~~---g-v--~~~dG-~~~~D~IV~ATGf~~~ 392 (545)
T 3uox_A 345 YETYNRDNVHLVDIREAPIQEVTPE---G-I--KTADA-AYDLDVIIYATGFDAV 392 (545)
T ss_dssp HHHTTSTTEEEEETTTSCEEEEETT---E-E--EESSC-EEECSEEEECCCCBSS
T ss_pred HHHhcCCCEEEEecCCCCceEEccC---e-E--EeCCC-eeecCEEEECCccccc
Confidence 4555667888886 8999998732 3 3 23457 8999999999998753
No 266
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=51.25 E-value=24 Score=33.85 Aligned_cols=47 Identities=13% Similarity=0.213 Sum_probs=35.3
Q ss_pred HHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-CeEEecCEEEEccChh
Q 013390 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (444)
Q Consensus 167 ~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (444)
.+.+.+++.|++++. ..|++|..++ .. |.++ |+++.+|+||+|+...
T Consensus 64 ~l~~~~~~~gv~~~~-~~v~~id~~~--~~---V~~~~g~~i~~d~lviAtG~~ 111 (437)
T 3sx6_A 64 PIRHYVERKGIHFIA-QSAEQIDAEA--QN---ITLADGNTVHYDYLMIATGPK 111 (437)
T ss_dssp ECHHHHHTTTCEEEC-SCEEEEETTT--TE---EEETTSCEEECSEEEECCCCE
T ss_pred HHHHHHHHCCCEEEE-eEEEEEEcCC--CE---EEECCCCEEECCEEEECCCCC
Confidence 345566678999975 6999998765 42 4454 6789999999999874
No 267
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=47.73 E-value=25 Score=34.36 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=30.7
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~ 400 (444)
.++..+|||.+||.+. +.+ .....|+..|+.+|+.|+..
T Consensus 314 ~~t~~~~IyA~GD~~~-~~~-~~~~~A~~~g~~aa~~i~g~ 352 (488)
T 3dgz_A 314 EATSVPHIYAIGDVAE-GRP-ELTPTAIKAGKLLAQRLFGK 352 (488)
T ss_dssp SBCSSTTEEECGGGBT-TCC-CCHHHHHHHHHHHHHHHHSC
T ss_pred CccCCCCEEEeEEecC-CCC-cchhHHHHHHHHHHHHHcCC
Confidence 4577899999999864 334 46677999999999998854
No 268
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=47.56 E-value=28 Score=33.69 Aligned_cols=50 Identities=16% Similarity=0.064 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeC-C--eEEecCEEEEccChh
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGIS 219 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g--~~~~ad~VI~a~p~~ 219 (444)
+.+.+.+.+++.|++++.++.+. .+. +.++ |.+. | +++.+|+||+|+...
T Consensus 93 l~~~l~~~~~~~gv~~~~g~~~~---id~--~~v~-V~~~~G~~~~~~~d~lViAtG~~ 145 (464)
T 2a8x_A 93 RVAGVHFLMKKNKITEIHGYGTF---ADA--NTLL-VDLNDGGTESVTFDNAIIATGSS 145 (464)
T ss_dssp HHHHHHHHHHHTTCEEECEEEEE---SSS--SEEE-EEETTSCCEEEEEEEEEECCCEE
T ss_pred HHHHHHHHHHhCCCEEEEeEEEE---ecC--CeEE-EEeCCCceEEEEcCEEEECCCCC
Confidence 44455666777899999998764 333 4454 5554 6 689999999999874
No 269
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=46.98 E-value=26 Score=33.92 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=30.3
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~ 400 (444)
.++..+|||.+||.+. .+ .....|...|+.+|+.|+..
T Consensus 294 ~~t~~~~iya~GD~~~--~~-~~~~~A~~~g~~aa~~i~g~ 331 (463)
T 4dna_A 294 SRTSTPGIYALGDVTD--RV-QLTPVAIHEAMCFIETEYKN 331 (463)
T ss_dssp CBCSSTTEEECSGGGS--SC-CCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCEEEEEecCC--CC-CChHHHHHHHHHHHHHHcCC
Confidence 4577899999999875 23 35667999999999999854
No 270
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=46.67 E-value=23 Score=34.49 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=30.8
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~ 400 (444)
.++..+|||.+||.+. +.+ ....-|+..|+.+|+.|+..
T Consensus 314 ~~t~~~~IyA~GD~~~-~~~-~~~~~A~~~g~~aa~~i~g~ 352 (483)
T 3dgh_A 314 EATNVANIYAVGDIIY-GKP-ELTPVAVLAGRLLARRLYGG 352 (483)
T ss_dssp CBCSSTTEEECSTTBT-TSC-CCHHHHHHHHHHHHHHHHSC
T ss_pred CccCCCCEEEEEcccC-CCC-ccHHHHHHHHHHHHHHHcCC
Confidence 4577899999999874 334 46677999999999998753
No 271
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=46.28 E-value=9.5 Score=38.11 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=32.7
Q ss_pred HHhcCcEEEc--CceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHH
Q 013390 172 MRTRGCEFLD--GRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 222 (444)
Q Consensus 172 l~~~G~~v~~--~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~ 222 (444)
+.+.++++.. +++|.+|..+ | | +..+|+++++|.||+||......
T Consensus 340 l~~~nV~lv~~~~~~I~~it~~---g-v--~~~dG~~~~~DvIV~ATGf~~~~ 386 (540)
T 3gwf_A 340 YNRPNVEAVAIKENPIREVTAK---G-V--VTEDGVLHELDVLVFATGFDAVD 386 (540)
T ss_dssp GGSTTEEEEETTTSCEEEECSS---E-E--EETTCCEEECSEEEECCCBSCSS
T ss_pred hcCCCEEEEeCCCCCccEEecC---e-E--EcCCCCEEECCEEEECCccCccc
Confidence 3456788886 7899998632 3 3 23458889999999999987543
No 272
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=45.95 E-value=20 Score=33.76 Aligned_cols=39 Identities=23% Similarity=0.151 Sum_probs=31.5
Q ss_pred CCCCCEEEeeccccc-CCCcchhhHHHHHHHHHHHHHHHHh
Q 013390 362 TSFPNLFMAGDWITT-RHGSWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 362 ~~~~~l~laGd~~~~-~~~~~~~egAv~SG~~aA~~il~~l 401 (444)
+..+|+|-+||.+.. ..| -+..-|...|..+|+.|+..+
T Consensus 284 t~~p~VfAiGDva~~~~~p-k~a~~A~~qa~v~A~ni~~~l 323 (401)
T 3vrd_B 284 SLQPGIHVIGDACNAAPMP-KSAYSANSQAKVAAAAVVALL 323 (401)
T ss_dssp SSSTTEEECGGGBCCTTSC-BSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEecccccCCCCC-chHHHHHHHHHHHHHHHHHHh
Confidence 567999999997752 344 466778899999999999887
No 273
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=45.28 E-value=22 Score=34.32 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=31.8
Q ss_pred HhcCcEEEcCceeeEEEecCCCCeEEEEEeC-C-eEEecCEEEEccCh
Q 013390 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K-ETYSAGAVVLAVGI 218 (444)
Q Consensus 173 ~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~-g-~~~~ad~VI~a~p~ 218 (444)
++.|++++++++|.+|..++ .. |.++ + .++.+|+||+|+..
T Consensus 70 ~~~gi~v~~~~~v~~i~~~~----~~-v~~~~g~~~~~~d~lviAtG~ 112 (449)
T 3kd9_A 70 KKRGIDLHLNAEVIEVDTGY----VR-VRENGGEKSYEWDYLVFANGA 112 (449)
T ss_dssp HHTTCEEETTCEEEEECSSE----EE-EECSSSEEEEECSEEEECCCE
T ss_pred HhcCcEEEecCEEEEEecCC----CE-EEECCceEEEEcCEEEECCCC
Confidence 56799999999999996533 32 4555 4 47899999999985
No 274
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=45.20 E-value=25 Score=34.10 Aligned_cols=38 Identities=24% Similarity=0.216 Sum_probs=30.6
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~ 400 (444)
.++..+|||.+||.... + .....|+..|+.||+.|+..
T Consensus 296 ~~t~~~~Iya~GD~~~~--~-~~~~~A~~~g~~aa~~i~~~ 333 (466)
T 3l8k_A 296 MKTNIPNVFATGDANGL--A-PYYHAAVRMSIAAANNIMAN 333 (466)
T ss_dssp CBCSSTTEEECGGGTCS--C-CSHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCEEEEEecCCC--C-ccHhHHHHHHHHHHHHHhCC
Confidence 45678999999998753 4 46677999999999999854
No 275
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=44.79 E-value=30 Score=33.69 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=29.9
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~ 400 (444)
.++..+|||.+||.+. .+ .....|+..|+.+|+.|+..
T Consensus 314 ~~t~~~~Iya~GD~~~--~~-~~~~~A~~~g~~aa~~i~~~ 351 (484)
T 3o0h_A 314 MTTNVSHIWAVGDVTG--HI-QLTPVAIHDAMCFVKNAFEN 351 (484)
T ss_dssp SBCSSTTEEECGGGGT--SC-CCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCEEEEEecCC--CC-cCHHHHHHHHHHHHHHHcCC
Confidence 4577899999999875 23 45667999999999999854
No 276
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=44.26 E-value=23 Score=34.68 Aligned_cols=39 Identities=23% Similarity=0.112 Sum_probs=31.0
Q ss_pred CCCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHH
Q 013390 359 RGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 359 ~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~ 400 (444)
..++..+|+|.+||.+. .+ .....|+..|+.||+.|+..
T Consensus 300 ~~~t~~~~IyA~GD~~~--~~-~~~~~A~~~g~~aa~~i~~~ 338 (492)
T 3ic9_A 300 TLQTSVDHIFVAGDANN--TL-TLLHEAADDGKVAGTNAGAY 338 (492)
T ss_dssp TCBCSSTTEEECGGGGT--SS-CSHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCCCEEEEEecCC--CC-ccHHHHHHHHHHHHHHHcCC
Confidence 34567899999999875 34 35667999999999999873
No 277
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=44.10 E-value=28 Score=33.84 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=30.5
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~ 400 (444)
.++..+|||.+||.+. .+ .....|+..|+.+|+.|+..
T Consensus 319 ~~t~~~~IyA~GD~~~--~~-~~~~~A~~~g~~aa~~i~~~ 356 (478)
T 3dk9_A 319 QNTNVKGIYAVGDVCG--KA-LLTPVAIAAGRKLAHRLFEY 356 (478)
T ss_dssp CBCSSTTEEECGGGGC--SS-CCHHHHHHHHHHHHHHHHSC
T ss_pred cccCCCCEEEEEecCC--CC-ccHhHHHHHHHHHHHHHcCC
Confidence 4577899999999873 34 46677999999999999864
No 278
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=44.05 E-value=18 Score=35.53 Aligned_cols=37 Identities=14% Similarity=0.260 Sum_probs=30.6
Q ss_pred CCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 363 SFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 363 ~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
..+++|.+||... ++ ....|+..|+.||..|...+|.
T Consensus 342 s~~~vya~GD~~~--~~--~~~~A~~~g~~aa~~i~~~lg~ 378 (493)
T 1y56_A 342 IKDGIYVAGSAVS--IK--PHYANYLEGKLVGAYILKEFGY 378 (493)
T ss_dssp EETTEEECSTTTC--CC--CHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCEEEEeccCC--cc--CHHHHHHHHHHHHHHHHHHcCC
Confidence 4689999999874 33 4567999999999999998874
No 279
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=43.69 E-value=31 Score=34.06 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=30.6
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~ 400 (444)
.++..+|||.+||.+. +.+ .....|+..|+.||+.|+..
T Consensus 342 ~~Ts~~~IyA~GD~~~-g~~-~~~~~A~~~g~~aa~~i~g~ 380 (519)
T 3qfa_A 342 EQTNVPYIYAIGDILE-DKV-ELTPVAIQAGRLLAQRLYAG 380 (519)
T ss_dssp SBCSSTTEEECGGGBS-SSC-CCHHHHHHHHHHHHHHHHSC
T ss_pred CccCCCCEEEEEeccC-CCC-ccHHHHHHHHHHHHHHHcCC
Confidence 4567899999999874 234 46677999999999998853
No 280
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=43.23 E-value=34 Score=33.11 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=29.2
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|||.+||.+. .+ ....-|+..|+.||+.|+.
T Consensus 305 ~~t~~~~Iya~GD~~~--~~-~~~~~A~~~g~~aa~~i~g 341 (470)
T 1dxl_A 305 FSTNVSGVYAIGDVIP--GP-MLAHKAEEDGVACVEYLAG 341 (470)
T ss_dssp CBCSSTTEEECSTTSS--SC-CCHHHHHHHHHHHHHHHTT
T ss_pred CccCCCCEEEEeccCC--CC-ccHHHHHHHHHHHHHHHcC
Confidence 3467899999999874 34 3556789999999999875
No 281
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=42.69 E-value=31 Score=33.47 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=30.5
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~ 400 (444)
.++..+|||.+||.+. .| .....|...|+.||+.|+..
T Consensus 306 ~~t~~~~Iya~GD~~~--~~-~~~~~A~~~g~~aa~~i~g~ 343 (476)
T 3lad_A 306 CATSVPGVYAIGDVVR--GA-MLAHKASEEGVVVAERIAGH 343 (476)
T ss_dssp SBCSSTTEEECGGGSS--SC-CCHHHHHHHHHHHHHHHHHC
T ss_pred cccCCCCEEEEEccCC--Cc-ccHHHHHHHHHHHHHHhcCC
Confidence 4567899999999874 24 35677999999999999864
No 282
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=41.71 E-value=20 Score=33.92 Aligned_cols=40 Identities=15% Similarity=-0.005 Sum_probs=31.1
Q ss_pred CCCCCCCEEEeecccccC--CCcchhhHHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTR--HGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~--~~~~~~egAv~SG~~aA~~il~~ 400 (444)
.++..+++|.+||..... .+ +....|...|+.||+.|+..
T Consensus 253 ~~t~~~~IyA~GD~a~~~~~~~-~~~~~A~~qg~~aa~~i~g~ 294 (385)
T 3klj_A 253 METSIKDIYACGDVAEFYGKNP-GLINIANKQGEVAGLNACGE 294 (385)
T ss_dssp CBCSSTTEEECGGGEEETTBCC-CCHHHHHHHHHHHHHHHTTC
T ss_pred cccCCCCEEEEEeeEecCCCcc-cHHHHHHHHHHHHHHHhcCC
Confidence 456789999999987531 23 46778999999999998753
No 283
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=40.36 E-value=29 Score=33.89 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=30.4
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~ 400 (444)
.++..+|||.+||.+. .| .....|+..|+.||+.|+..
T Consensus 326 ~~t~~~~IyA~GD~~~--~~-~~~~~A~~~g~~aa~~i~g~ 363 (491)
T 3urh_A 326 FQTSIAGVYAIGDVVR--GP-MLAHKAEDEGVAVAEIIAGQ 363 (491)
T ss_dssp CBCSSTTEEECGGGSS--SC-CCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCEEEEEecCC--Cc-cchhHHHHHHHHHHHHHcCC
Confidence 4577899999999874 34 46777999999999998754
No 284
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=40.35 E-value=35 Score=33.07 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=30.2
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~ 400 (444)
.++..+|+|.+||.+. .+ ....-|+..|+.||+.|+..
T Consensus 313 ~~t~~~~IyA~GD~~~--~~-~~~~~A~~~g~~aa~~i~~~ 350 (478)
T 1v59_A 313 FNSKFPHIKVVGDVTF--GP-MLAHKAEEEGIAAVEMLKTG 350 (478)
T ss_dssp SBCSSTTEEECGGGSS--SC-CCHHHHHHHHHHHHHHHHHS
T ss_pred CccCCCCEEEeeccCC--Cc-ccHHHHHHHHHHHHHHHcCC
Confidence 4467899999999875 34 35667999999999999863
No 285
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=39.20 E-value=49 Score=29.65 Aligned_cols=42 Identities=26% Similarity=0.256 Sum_probs=33.0
Q ss_pred CCCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 359 RGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 359 ~~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
..+|.+||||-|||.+..++ ..+.-|+..|+.||+.|.+.+.
T Consensus 265 ~~~Ts~pgIyA~GDv~~~~~--~~~~~A~~~G~~AA~~i~~~L~ 306 (312)
T 4gcm_A 265 DMTTSVPGIFAAGDVRDKGL--RQIVTATGDGSIAAQSAAEYIE 306 (312)
T ss_dssp TSBCSSTTEEECSTTBSCSC--CSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCEEEEeecCCCcc--hHHHHHHHHHHHHHHHHHHHHH
Confidence 44678999999999875433 3566799999999999987663
No 286
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=39.07 E-value=39 Score=32.84 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=29.3
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|.+||.+. .+ ....-|+..|+.||+.|+.
T Consensus 312 ~~t~~~~IyA~GD~~~--~~-~l~~~A~~~g~~aa~~i~g 348 (482)
T 1ojt_A 312 MRTNVPHIYAIGDIVG--QP-MLAHKAVHEGHVAAENCAG 348 (482)
T ss_dssp SBCSSTTEEECGGGTC--SS-CCHHHHHHHHHHHHHHHTT
T ss_pred cccCCCCEEEEEcccC--CC-ccHHHHHHHHHHHHHHHcC
Confidence 3567899999999875 23 3556799999999999875
No 287
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=39.03 E-value=37 Score=34.08 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=30.5
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~ 400 (444)
.++..+|||.+||... +.+ .....|+..|+.+|+.|+..
T Consensus 421 ~~ts~~~VyA~GD~~~-~~~-~~~~~A~~~g~~aa~~i~~~ 459 (598)
T 2x8g_A 421 EQTTVSNVYAIGDINA-GKP-QLTPVAIQAGRYLARRLFAG 459 (598)
T ss_dssp SBCSSTTEEECGGGBT-TSC-CCHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCEEEEeeecC-CCC-ccHHHHHHhHHHHHHHHhcC
Confidence 3577899999999854 224 46677999999999999864
No 288
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=38.99 E-value=21 Score=32.91 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=28.3
Q ss_pred CCCCEEEeeccccc--CCCc--chhhHHHHHHHHHHHHHHHHhC
Q 013390 363 SFPNLFMAGDWITT--RHGS--WSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 363 ~~~~l~laGd~~~~--~~~~--~~~egAv~SG~~aA~~il~~lg 402 (444)
-+|+||++|..... +.+- -..-+-+.||++||+.|+++|.
T Consensus 282 ~~~~~~~~g~~~~~~~~~~r~g~~fg~m~~sg~~~a~~~~~~~~ 325 (326)
T 2gjc_A 282 GVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA 325 (326)
T ss_dssp TSTTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEECChHHHHhcCCCCCChhhhhhhhhhHHHHHHHHHHhh
Confidence 46899999987621 2221 2345567899999999999873
No 289
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=38.80 E-value=17 Score=34.84 Aligned_cols=35 Identities=17% Similarity=0.445 Sum_probs=23.2
Q ss_pred CCCCCEEEeecccc-cCCCc-chhhHHHHHHHHHHHH
Q 013390 362 TSFPNLFMAGDWIT-TRHGS-WSQERSYVTGLEAANR 396 (444)
Q Consensus 362 ~~~~~l~laGd~~~-~~~~~-~~~egAv~SG~~aA~~ 396 (444)
..++||||||+-+. .++-+ =.+--|..||+.|++.
T Consensus 380 k~~~gLy~aGE~lD~~~~~GGynlq~a~stG~~ag~~ 416 (417)
T 3v76_A 380 KEVPGLYFVGECVDVTGWLGGYNFQWAWASGFVAGQD 416 (417)
T ss_dssp TTSTTEEECGGGBSEEECSSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEeEecccCCCCHHHHHHHHHHHHHhCc
Confidence 35799999995443 12221 2456788999988864
No 290
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=38.49 E-value=37 Score=32.99 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=29.7
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|||.+||.+. .+ ....-|+..|+.+|+.|+.
T Consensus 310 ~~t~~~~IyA~GD~~~--~~-~~~~~A~~~g~~aa~~i~~ 346 (479)
T 2hqm_A 310 QNTNVPNIYSLGDVVG--KV-ELTPVAIAAGRKLSNRLFG 346 (479)
T ss_dssp CBCSSTTEEECGGGTT--SS-CCHHHHHHHHHHHHHHHHS
T ss_pred CccCCCCEEEEEecCC--Cc-ccHHHHHHHHHHHHHHhcC
Confidence 3567899999999864 34 4567799999999999885
No 291
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=38.03 E-value=29 Score=37.58 Aligned_cols=40 Identities=25% Similarity=0.242 Sum_probs=32.5
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
.+|..+|||.+||-+. .+ ..+..|+..|+.||+.|...+.
T Consensus 469 ~~Ts~~~VfA~GD~~~--~~-~~~~~A~~~G~~aA~~i~~~L~ 508 (1025)
T 1gte_A 469 MQTSEPWVFAGGDIVG--MA-NTTVESVNDGKQASWYIHKYIQ 508 (1025)
T ss_dssp CBCSSTTEEECSGGGC--SC-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCEEEeCCCCC--Cc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999874 34 4677799999999999997663
No 292
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=37.24 E-value=41 Score=32.34 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=29.5
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|.+||.+. .+ ....-|+..|+.+|+.|+.
T Consensus 291 ~~t~~~~IyA~GD~~~--~~-~~~~~A~~~g~~aa~~i~~ 327 (450)
T 1ges_A 291 QNTNIEGIYAVGDNTG--AV-ELTPVAVAAGRRLSERLFN 327 (450)
T ss_dssp SBCSSTTEEECSGGGT--SC-CCHHHHHHHHHHHHHHHHT
T ss_pred CccCCCCEEEEeccCC--CC-ccHHHHHHHHHHHHHHHcC
Confidence 3567899999999874 23 3566799999999999875
No 293
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=36.69 E-value=22 Score=35.60 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=30.4
Q ss_pred CCCCCEEEeecccccCC----C-cchhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITTRH----G-SWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~~----~-~~~~egAv~SG~~aA~~il~~lg 402 (444)
++++|||-||+.+..-+ + +.++-.|+..|++|++.+.+...
T Consensus 519 ~~I~GLyAaGe~~~g~~g~~~~~g~sl~~~~v~Gr~Ag~~aa~~~~ 564 (566)
T 1qo8_A 519 KPIDGLFAAGEVTGGVHGYNRLGGNAIADTVVFGRIAGDNAAKHAL 564 (566)
T ss_dssp CEEEEEEECSTTBCSSSTTCCCTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CEeCCEEecccccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhh
Confidence 68999999999764322 2 13566789999999999887653
No 294
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=36.25 E-value=20 Score=35.97 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=30.0
Q ss_pred CCCCCEEEeecccccCC----C-cchhhHHHHHHHHHHHHHHHHh
Q 013390 362 TSFPNLFMAGDWITTRH----G-SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~~----~-~~~~egAv~SG~~aA~~il~~l 401 (444)
++++|||-||+-+..-+ + +.++-.|+..|++|++.+.+..
T Consensus 525 ~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~vfGr~Ag~~aa~~~ 569 (572)
T 1d4d_A 525 KPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKFA 569 (572)
T ss_dssp SEEEEEEECSTTEESTTTTSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCeeECeecccCCCCCCCCchHhHHHHHHHHHHHHHHHHHHh
Confidence 68999999999764322 2 1356678999999999987654
No 295
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=36.10 E-value=51 Score=31.83 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=29.8
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|.+||.... .+ ....-|+..|+.||+.|+.
T Consensus 302 ~~t~~~~IyA~GD~~~~-~~-~~~~~A~~~g~~aa~~i~~ 339 (468)
T 2qae_A 302 FETSIPDVYAIGDVVDK-GP-MLAHKAEDEGVACAEILAG 339 (468)
T ss_dssp SBCSSTTEEECGGGBSS-SC-SCHHHHHHHHHHHHHHHTT
T ss_pred cccCCCCEEEeeccCCC-CC-ccHhHHHHHHHHHHHHHcC
Confidence 45678999999998752 34 4566799999999998875
No 296
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=35.88 E-value=38 Score=32.79 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=29.5
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+++|.+||.+. .+ .....|...|+.||+.|+.
T Consensus 308 ~~t~~~~IyA~GD~~~--~~-~~~~~A~~~g~~aa~~i~~ 344 (474)
T 1zmd_A 308 FQTKIPNIYAIGDVVA--GP-MLAHKAEDEGIICVEGMAG 344 (474)
T ss_dssp CBCSSTTEEECGGGSS--SC-CCHHHHHHHHHHHHHHHTT
T ss_pred CccCCCCEEEeeecCC--CC-ccHHHHHHHHHHHHHHhcC
Confidence 4567899999999874 34 3566799999999999875
No 297
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=34.05 E-value=32 Score=34.76 Aligned_cols=43 Identities=26% Similarity=0.248 Sum_probs=31.2
Q ss_pred CCCCCCCCEEEeecccccC-CC-----cchhhHHHHHHHHHHHHHHHHh
Q 013390 359 RGFTSFPNLFMAGDWITTR-HG-----SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 359 ~~~~~~~~l~laGd~~~~~-~~-----~~~~egAv~SG~~aA~~il~~l 401 (444)
..+++++|||-||+...++ |+ +.++-.|+..|+.|++.+.+..
T Consensus 367 ~~~~~IpGLyAaGe~a~~g~hGanrl~gnsl~~~~vfGr~Ag~~aa~~~ 415 (602)
T 1kf6_A 367 NCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERA 415 (602)
T ss_dssp TSBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCCEEEccccccccccCCCCCccHHHHHHHHHHHHHHHHHHHhh
Confidence 3456899999999975321 22 1345678899999999988775
No 298
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=33.96 E-value=51 Score=31.86 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=29.2
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|.+||... .+ ....-|+..|+.+|+.|+.
T Consensus 290 ~~t~~~~Iya~GD~~~--~~-~~~~~A~~~g~~aa~~i~g 326 (463)
T 2r9z_A 290 QNTNVPGVYALGDITG--RD-QLTPVAIAAGRRLAERLFD 326 (463)
T ss_dssp SBCSSTTEEECGGGGT--SC-CCHHHHHHHHHHHHHHHHS
T ss_pred CccCCCCEEEEeecCC--Cc-ccHHHHHHHHHHHHHHHcC
Confidence 3467899999999874 23 3566799999999999874
No 299
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=33.86 E-value=51 Score=32.22 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=29.7
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|||.+||.+. .+ ....-|+..|+.+|+.|+.
T Consensus 318 ~~t~~~~IyA~GD~~~--~~-~l~~~A~~~g~~aa~~i~g 354 (495)
T 2wpf_A 318 SRTNVPNIYAIGDITD--RL-MLTPVAINEGAALVDTVFG 354 (495)
T ss_dssp CBCSSTTEEECGGGGC--SC-CCHHHHHHHHHHHHHHHHS
T ss_pred CccCCCCEEEEeccCC--Cc-cCHHHHHHHHHHHHHHhcC
Confidence 4567899999999874 23 3567799999999999875
No 300
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=33.82 E-value=24 Score=35.17 Aligned_cols=43 Identities=21% Similarity=0.361 Sum_probs=31.1
Q ss_pred HHhcCcEEE--cCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhH
Q 013390 172 MRTRGCEFL--DGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (444)
Q Consensus 172 l~~~G~~v~--~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~ 221 (444)
+.+.++++. ..++|++|..+ | | +..+| ++++|.||+||.....
T Consensus 353 l~~~~V~lvd~~~~~I~~it~~---g-v--~~~dG-~~~~D~iI~ATGf~~~ 397 (549)
T 4ap3_A 353 YNRDNVELVDLRSTPIVGMDET---G-I--VTTGA-HYDLDMIVLATGFDAM 397 (549)
T ss_dssp GGSTTEEEEETTTSCEEEEETT---E-E--EESSC-EEECSEEEECCCEEES
T ss_pred hcCCCEEEEeCCCCCceEEeCC---c-E--EeCCC-ceecCEEEECCccccc
Confidence 445677887 36899998742 3 3 23457 8999999999998754
No 301
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=33.55 E-value=51 Score=32.11 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=29.9
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|.+||.+. .+ .....|+..|+.+|+.|+.
T Consensus 314 ~~t~~~~IyA~GD~~~--~~-~l~~~A~~~g~~aa~~i~g 350 (490)
T 1fec_A 314 SKTNVDNIYAIGDVTD--RV-MLTPVAINEGAAFVDTVFA 350 (490)
T ss_dssp CBCSSTTEEECGGGGC--SC-CCHHHHHHHHHHHHHHHHS
T ss_pred CccCCCCEEEEeccCC--Cc-cCHHHHHHHHHHHHHHhcC
Confidence 4567899999999874 23 3667799999999999975
No 302
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=33.39 E-value=42 Score=32.76 Aligned_cols=37 Identities=16% Similarity=0.036 Sum_probs=29.2
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..++||.+||.+. .+ ....-|...|+.+|+.|+.
T Consensus 305 ~~t~~~~IyA~GD~~~--~~-~l~~~A~~~g~~aa~~i~g 341 (499)
T 1xdi_A 305 SRTLATGIYAAGDCTG--LL-PLASVAAMQGRIAMYHALG 341 (499)
T ss_dssp SBCSSTTEEECSGGGT--SC-SCHHHHHHHHHHHHHHHTT
T ss_pred cccCCCCEEEEeccCC--Cc-ccHHHHHHHHHHHHHHhcC
Confidence 4567899999999874 34 3556799999999999875
No 303
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=33.14 E-value=31 Score=33.47 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=30.0
Q ss_pred CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
+..+|+|.+||... +.. +.+..|+..|..+|+.|+.++.
T Consensus 349 t~~pgvya~GD~~~-gp~-~~i~~a~~~g~~~a~~i~~~l~ 387 (456)
T 1lqt_A 349 NGSPNEYVVGWIKR-GPT-GVIGTNKKDAQDTVDTLIKNLG 387 (456)
T ss_dssp TTCSSEEECTHHHH-CSC-SCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeccCC-CCc-hhHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999765 222 3455688999999999998874
No 304
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=33.11 E-value=44 Score=32.32 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=29.2
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+++|.+||.+. .+ ....-|...|+.+|+.|+.
T Consensus 297 ~~t~~~~Iya~GD~~~--~~-~l~~~A~~~g~~aa~~i~g 333 (464)
T 2eq6_A 297 METSVPGVYAIGDAAR--PP-LLAHKAMREGLIAAENAAG 333 (464)
T ss_dssp CBCSSTTEEECGGGTC--SS-CCHHHHHHHHHHHHHHHTT
T ss_pred cccCCCCEEEEeccCC--Cc-ccHHHHHHHHHHHHHHhcC
Confidence 4567899999999874 24 3556799999999999874
No 305
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=32.59 E-value=57 Score=31.31 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=29.7
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~ 400 (444)
.++..+++|.+||.+. .+ .....|...|+.+|+.|+..
T Consensus 290 ~~t~~~~iya~GD~~~--~~-~~~~~A~~~g~~aa~~i~~~ 327 (455)
T 2yqu_A 290 LRTRVPHIYAIGDVVR--GP-MLAHKASEEGIAAVEHMVRG 327 (455)
T ss_dssp SBCSSTTEEECGGGSS--SC-CCHHHHHHHHHHHHHHHHHS
T ss_pred cccCCCCEEEEecCCC--Cc-cCHHHHHHhHHHHHHHHcCC
Confidence 3466799999999875 24 35567899999999999863
No 306
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=32.09 E-value=47 Score=32.06 Aligned_cols=37 Identities=27% Similarity=0.207 Sum_probs=29.4
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+++|.+||... .+ .....|...|+.+|..|+.
T Consensus 297 ~~t~~~~iya~GD~~~--~~-~~~~~A~~~g~~aa~~i~~ 333 (467)
T 1zk7_A 297 MRTSNPNIYAAGDCTD--QP-QFVYVAAAAGTRAAINMTG 333 (467)
T ss_dssp CBCSSTTEEECSTTBS--SC-CCHHHHHHHHHHHHHHHTT
T ss_pred cccCCCCEEEEeccCC--Cc-ccHHHHHHHHHHHHHHHcC
Confidence 4567899999999875 34 3566799999999998875
No 307
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=31.99 E-value=42 Score=33.36 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=30.8
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~ 400 (444)
.+|.++|+|-+||-+. ++| ....-|...|+.+|+.++..
T Consensus 346 ~~Ts~p~IyAiGDv~~-~~p-~La~~A~~eg~~aa~~i~g~ 384 (542)
T 4b1b_A 346 SCTNIPSIFAVGDVAE-NVP-ELAPVAIKAGEILARRLFKD 384 (542)
T ss_dssp SBCSSTTEEECTTSBT-TCC-CCHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCeEEeccccC-Cch-hHHHHHHHHHHHHHHHHhcC
Confidence 4578999999999875 455 45677888999999988754
No 308
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=31.91 E-value=47 Score=32.75 Aligned_cols=37 Identities=30% Similarity=0.317 Sum_probs=29.5
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+++|.+||.+. .+ ....-|...|+.||+.|+.
T Consensus 341 ~~t~~~~IyA~GD~~~--~~-~~~~~A~~~g~~aa~~i~g 377 (523)
T 1mo9_A 341 LQTSVPNVYAVGDLIG--GP-MEMFKARKSGCYAARNVMG 377 (523)
T ss_dssp SBCSSTTEEECGGGGC--SS-CSHHHHHHHHHHHHHHHTT
T ss_pred CccCCCCEEEEeecCC--Cc-ccHHHHHHHHHHHHHHHcC
Confidence 4567899999999885 33 3566799999999999874
No 309
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=31.59 E-value=26 Score=35.05 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=29.8
Q ss_pred CCCCCEEEeecccccCCC-----cchhhHHHHHHHHHHHHHHHHh
Q 013390 362 TSFPNLFMAGDWITTRHG-----SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~~~-----~~~~egAv~SG~~aA~~il~~l 401 (444)
++++|||-||+-+..-++ +.++-.|+..|++|++.+.+..
T Consensus 524 ~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~~fGr~Ag~~aa~~~ 568 (571)
T 1y0p_A 524 QVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAKYS 568 (571)
T ss_dssp CEEEEEEECSTTEESSSTTSCCTTHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcCCcEeceEcCCCCcCCCCCchHhHHHHHHHHHHHHHHHHHHh
Confidence 689999999987653222 1356668999999999987654
No 310
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=31.58 E-value=27 Score=32.47 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=28.2
Q ss_pred CCCEEEeeccccc--CCCc--chhhHHHHHHHHHHHHHHHHhC
Q 013390 364 FPNLFMAGDWITT--RHGS--WSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 364 ~~~l~laGd~~~~--~~~~--~~~egAv~SG~~aA~~il~~lg 402 (444)
+||||.+|..... |.|- -..-|=+.||++||+.|++.|.
T Consensus 293 ~~gl~~~gm~~~~~~g~~rmgp~fg~m~~sg~~~a~~~~~~~~ 335 (344)
T 3jsk_A 293 VPGLIVGGMELSEIDGANRMGPTFGAMALSGVKAAHEAIRVFD 335 (344)
T ss_dssp ETTEEECGGGHHHHHTCEECCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEechhhHhhcCCCCCCcccceeeecCHHHHHHHHHHHH
Confidence 5899999987642 2221 1334457899999999999986
No 311
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=30.68 E-value=32 Score=30.75 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=30.5
Q ss_pred CCCEEEeeccccc--CCC--cchhhHHHHHHHHHHHHHHHHhCC
Q 013390 364 FPNLFMAGDWITT--RHG--SWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 364 ~~~l~laGd~~~~--~~~--~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
.|++|.+|+.+.. +.+ +.+..+++.||..+|..|.+.|.+
T Consensus 233 ~p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~~~l~~ 276 (284)
T 1rp0_A 233 VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGL 276 (284)
T ss_dssp ETTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHHHHhhh
Confidence 4899999987632 111 035678999999999999999974
No 312
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=30.50 E-value=34 Score=33.15 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=30.1
Q ss_pred CCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 364 FPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 364 ~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
.+++|.+||... +.. +.+..|+..|..+|+.|+.++..
T Consensus 359 ~p~vya~Gd~~~-g~~-~~i~~a~~~g~~aa~~i~~~l~~ 396 (460)
T 1cjc_A 359 VPGLYCSGWVKR-GPT-GVITTTMTDSFLTGQILLQDLKA 396 (460)
T ss_dssp CTTEEECTHHHH-CTT-CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCc-CCC-ccHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999774 322 34567999999999999998853
No 313
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=30.43 E-value=24 Score=36.28 Aligned_cols=37 Identities=16% Similarity=0.049 Sum_probs=30.2
Q ss_pred CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
+..+++|.+||.... ..+..|+..|..+|..|...+.
T Consensus 639 t~~~~VyaiGD~~~~----~~~~~A~~~g~~aa~~i~~~l~ 675 (690)
T 3k30_A 639 GEIASVRGIGDAWAP----GTIAAAVWSGRRAAEEFDAVLP 675 (690)
T ss_dssp TSCSEEEECGGGTSC----BCHHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCCEEEEeCCCch----hhHHHHHHHHHHHHHHHHhhcc
Confidence 357899999998863 3556699999999999988864
No 314
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=30.27 E-value=49 Score=33.65 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=26.3
Q ss_pred CCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHh
Q 013390 361 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 361 ~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~l 401 (444)
.++++|||-||+...++.. ...-+++..|+.|++.+.+.+
T Consensus 428 ~t~I~GLyAaGe~a~~~~~-r~~~~sl~~G~~ag~~aa~~~ 467 (643)
T 1jnr_A 428 MTTVKGLFAIGDCAGANPH-KFSSGSFTEGRIAAKAAVRFI 467 (643)
T ss_dssp BCSSBTEEECGGGBCSCCC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeCCEEeeecccccccc-ccchhHHHHHHHHHHHHHHHH
Confidence 4789999999997754322 233346666777766666554
No 315
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=29.54 E-value=47 Score=35.68 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=31.6
Q ss_pred CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhCC
Q 013390 362 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
+..+|||.+||.+. .+ .+..|+..|+.||..|+..++.
T Consensus 408 ts~p~IyAaGD~a~--~~--~l~~A~~~G~~aA~~i~~~lg~ 445 (965)
T 2gag_A 408 DAVANQHLAGAMTG--RL--DTASALSTGAATGAAAATAAGF 445 (965)
T ss_dssp SCCTTEEECGGGGT--CC--SHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEecCC--ch--hHHHHHHHHHHHHHHHHHHcCC
Confidence 56799999999874 34 2447999999999999999985
No 316
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=29.47 E-value=45 Score=32.17 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=29.1
Q ss_pred CCCCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHH
Q 013390 360 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 360 ~~~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~ 399 (444)
.++..+|+|.+||... .+ .....|...|+.+|+.|+.
T Consensus 293 ~~t~~~~Iya~GD~~~--~~-~~~~~A~~~g~~aa~~i~g 329 (458)
T 1lvl_A 293 CQTSMHNVWAIGDVAG--EP-MLAHRAMAQGEMVAEIIAG 329 (458)
T ss_dssp CBCSSTTEEECGGGGC--SS-CCHHHHHHHHHHHHHHHTT
T ss_pred CcCCCCCEEEeeccCC--Cc-ccHHHHHHHHHHHHHHhcC
Confidence 3467799999999875 23 3556789999999999874
No 317
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=27.63 E-value=65 Score=32.61 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=30.8
Q ss_pred CCCCCEEEeeccccc-CC-----CcchhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITT-RH-----GSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~-~~-----~~~~~egAv~SG~~aA~~il~~lg 402 (444)
++++|||-||+...+ -| ++.++-.|+..|+.|++.+.+...
T Consensus 387 t~IpGLyAaGE~a~~g~hGanrlggnsL~~~~vfGr~Ag~~aa~~~~ 433 (621)
T 2h88_A 387 KVVPGLYACGEAASASVHGANRLGANSLLDLVVFGRACALTIAETCK 433 (621)
T ss_dssp EEEEEEEECGGGEECSSSTTSCCTTSHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccCceEEccccccccccCCCCCchHhHHHHHHHHHHHHHHHHHhhh
Confidence 579999999996421 12 224567789999999999988764
No 318
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=26.11 E-value=64 Score=31.60 Aligned_cols=41 Identities=12% Similarity=-0.099 Sum_probs=32.4
Q ss_pred CCCC-CCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHH
Q 013390 359 RGFT-SFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 400 (444)
Q Consensus 359 ~~~~-~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~ 400 (444)
..++ ..+|+|-+||.....+| .+-.-|.+.|..+|+.|...
T Consensus 358 ~lq~~~~~~IfAiGD~a~~~~p-~~a~~A~qqg~~~A~ni~~~ 399 (502)
T 4g6h_A 358 FLQVKGSNNIFAIGDNAFAGLP-PTAQVAHQEAEYLAKNFDKM 399 (502)
T ss_dssp TSBBTTCSSEEECGGGEESSSC-CCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCEEEEEcccCCCCC-CchHHHHHHHHHHHHHHHHH
Confidence 3444 67999999998876666 57778999999999988654
No 319
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=25.79 E-value=23 Score=33.13 Aligned_cols=46 Identities=17% Similarity=0.110 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhhHHH
Q 013390 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 223 (444)
Q Consensus 164 l~~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~~~~ 223 (444)
+.+.|.+.+++.|++|+++++|++|+... +++||.||.|...+.. +
T Consensus 100 l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-------------~~~ad~vV~AdG~~S~-R 145 (381)
T 3c4a_A 100 LVHALRDKCRSQGIAIRFESPLLEHGELP-------------LADYDLVVLANGVNHK-T 145 (381)
T ss_dssp HHHHHHHHHHHTTCEEETTCCCCSGGGCC-------------GGGCSEEEECCGGGGG-T
T ss_pred HHHHHHHHHHHCCCEEEeCCEeccchhcc-------------cccCCEEEECCCCCch-H
No 320
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=25.60 E-value=54 Score=33.52 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=30.7
Q ss_pred CCCCCCCCEEEeeccccc-CCC-----cchhhHHHHHHHHHHHHHHHHh
Q 013390 359 RGFTSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYL 401 (444)
Q Consensus 359 ~~~~~~~~l~laGd~~~~-~~~-----~~~~egAv~SG~~aA~~il~~l 401 (444)
..+++++|||-||+.... -|+ +.++-.|+..|+.|++.+.+..
T Consensus 380 ~~~v~IpGLYAaGE~a~~g~hGanrlggnsL~~~~vfGr~Ag~~aa~~~ 428 (660)
T 2bs2_A 380 RGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHC 428 (660)
T ss_dssp TSBCSSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceecCCEEeccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 345689999999996421 122 1356668899999999987765
No 321
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=25.33 E-value=34 Score=33.65 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=28.2
Q ss_pred CCCCCEEEeeccccc----CCCc-chhhHHHHHHHHHHHHHHH
Q 013390 362 TSFPNLFMAGDWITT----RHGS-WSQERSYVTGLEAANRVVD 399 (444)
Q Consensus 362 ~~~~~l~laGd~~~~----~~~~-~~~egAv~SG~~aA~~il~ 399 (444)
++++|||-||+-+.. .+.. .++-.|+..|++|++.+.+
T Consensus 466 ~~I~GLyAaGe~~gg~~g~~y~~G~sl~~~~~fGr~Ag~~aa~ 508 (510)
T 4at0_A 466 EPIPGLFAAGRCTSGVCAGGYASGTSLGDGSFYGRRAGISAAK 508 (510)
T ss_dssp SEEEEEEECGGGBCCSCSSSCCTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCcCCeeeceecccCCCcCCCCcHHhHHHHHHHHHHHHHHHHh
Confidence 689999999987642 2221 4566789999999998754
No 322
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=24.30 E-value=68 Score=31.28 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCcEEEcCceeeEEEecCCCCeEEEEEe-----------C-CeEEecCEEEEccCh
Q 013390 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-----------G-KETYSAGAVVLAVGI 218 (444)
Q Consensus 166 ~~l~~~l~~~G~~v~~~~~V~~I~~~~~~g~v~~v~~-----------~-g~~~~ad~VI~a~p~ 218 (444)
..+.+.+++.|++++.++.+ .|. . ..|+ +.. + ++++.+|+||+|+..
T Consensus 93 ~~~~~~~~~~gv~~~~g~~~-~id--~--~~v~-v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs 151 (500)
T 1onf_A 93 NIYRQNLSKDKVDLYEGTAS-FLS--E--NRIL-IKGTKDNNNKDNGPLNEEILEGRNILIAVGN 151 (500)
T ss_dssp HHHHHHHHHTTCEEEESCCC-CC-------------------------------CBSSEEECCCC
T ss_pred HHHHHHHHhCCCEEEEeEEE-Eee--C--CEEE-EEeccccccccccCCCceEEEeCEEEECCCC
Confidence 34445566789999998754 232 2 2343 322 1 567899999999986
No 323
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=24.02 E-value=55 Score=32.38 Aligned_cols=44 Identities=11% Similarity=0.242 Sum_probs=30.2
Q ss_pred HHHHhcCcEEE--cCceeeEEEecCCCCeEEEEEeCCeEEecCEEEEccChhh
Q 013390 170 DSMRTRGCEFL--DGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (444)
Q Consensus 170 ~~l~~~G~~v~--~~~~V~~I~~~~~~g~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (444)
+.+.+.++++. .+++|++|.. + | | .+.++++++|.||+|+....
T Consensus 346 ~~~~~~~v~lv~~~~~~i~~i~~-~--g-v---~~~d~~~~~D~ii~atG~~~ 391 (542)
T 1w4x_A 346 EMFNRDNVHLVDTLSAPIETITP-R--G-V---RTSEREYELDSLVLATGFDA 391 (542)
T ss_dssp HHTTSTTEEEEETTTSCEEEECS-S--E-E---EESSCEEECSEEEECCCCCC
T ss_pred HHhCCCCEEEEecCCCCceEEcC-C--e-E---EeCCeEEecCEEEEcCCccc
Confidence 34445556665 4789999862 1 2 3 33337799999999999875
No 324
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=21.93 E-value=34 Score=35.44 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=29.8
Q ss_pred CCCCCEEEeecccccCCCcchhhHHHHHHHHHHHHHHHHhC
Q 013390 362 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 402 (444)
Q Consensus 362 ~~~~~l~laGd~~~~~~~~~~~egAv~SG~~aA~~il~~lg 402 (444)
+..+++|.+||... + ..+..|+..|..||..|...+.
T Consensus 664 t~~~~VyAiGD~~~---~-~~~~~A~~~G~~aA~~i~~~l~ 700 (729)
T 1o94_A 664 NDIKGIYLIGDAEA---P-RLIADATFTGHRVAREIEEANP 700 (729)
T ss_dssp GTCCEEEECGGGTS---C-CCHHHHHHHHHHHHHTTTSSCT
T ss_pred cCCCCeEEEeCccc---h-hhHHHHHHHHHHHHHHhhhhcc
Confidence 56789999999775 3 3566799999999999977654
No 325
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=20.29 E-value=93 Score=28.82 Aligned_cols=39 Identities=10% Similarity=0.110 Sum_probs=31.4
Q ss_pred CCEEEeecccccCCC--cchhhHHHHHHHHHHHHHHHHhCC
Q 013390 365 PNLFMAGDWITTRHG--SWSQERSYVTGLEAANRVVDYLGD 403 (444)
Q Consensus 365 ~~l~laGd~~~~~~~--~~~~egAv~SG~~aA~~il~~lg~ 403 (444)
+++.++||..+...| +.+++-|+..|...|+.|...+..
T Consensus 311 grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~~~~~ 351 (412)
T 4hb9_A 311 STVTLLGDAIHNMTPMTGSGANTALRDALLLTQKLASVASG 351 (412)
T ss_dssp CSEEECTHHHHCSSCCSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCEEEEEcccccCCCchhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 689999998875444 268889999999999998877653
Done!