Query 013391
Match_columns 444
No_of_seqs 177 out of 1497
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:23:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013391.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013391hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 5E-133 1E-137 954.3 29.8 434 1-434 1-437 (443)
2 PLN00221 tubulin alpha chain; 100.0 8E-112 2E-116 870.9 33.2 432 1-432 1-442 (450)
3 PTZ00335 tubulin alpha chain; 100.0 5E-111 1E-115 864.7 33.3 429 1-429 1-439 (448)
4 PTZ00010 tubulin beta chain; P 100.0 8E-110 2E-114 856.5 33.5 431 1-431 1-431 (445)
5 PLN00220 tubulin beta chain; P 100.0 3E-109 6E-114 854.4 33.4 428 1-428 1-428 (447)
6 PLN00222 tubulin gamma chain; 100.0 5E-107 1E-111 835.1 32.7 427 1-428 2-444 (454)
7 cd02188 gamma_tubulin Gamma-tu 100.0 5E-107 1E-111 831.1 30.5 420 2-422 1-431 (431)
8 cd02187 beta_tubulin The tubul 100.0 1E-106 3E-111 829.6 33.0 424 2-425 1-424 (425)
9 cd02186 alpha_tubulin The tubu 100.0 2E-106 4E-111 829.6 31.4 423 2-424 1-433 (434)
10 PTZ00387 epsilon tubulin; Prov 100.0 6E-106 1E-110 827.4 32.2 416 1-427 1-451 (465)
11 KOG1374 Gamma tubulin [Cytoske 100.0 3E-103 7E-108 750.3 27.6 425 1-426 2-440 (448)
12 cd02190 epsilon_tubulin The tu 100.0 1.6E-98 3E-103 758.8 29.0 379 2-425 1-379 (379)
13 cd02189 delta_tubulin The tubu 100.0 2.6E-98 6E-103 772.1 31.0 410 4-423 2-445 (446)
14 cd06059 Tubulin The tubulin su 100.0 2.6E-90 5.5E-95 703.2 29.7 381 3-424 1-382 (382)
15 KOG1376 Alpha tubulin [Cytoske 100.0 3E-87 6.4E-92 638.9 16.3 404 1-419 1-406 (407)
16 KOG1375 Beta tubulin [Cytoskel 100.0 4.1E-68 8.8E-73 510.2 16.5 349 43-431 7-356 (369)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 7.2E-65 1.6E-69 507.6 24.4 327 3-371 1-328 (328)
18 cd06060 misato Human Misato sh 100.0 9.6E-50 2.1E-54 410.9 30.1 407 2-424 1-493 (493)
19 PF00091 Tubulin: Tubulin/FtsZ 100.0 1.2E-51 2.6E-56 388.5 9.3 215 3-223 1-215 (216)
20 smart00864 Tubulin Tubulin/Fts 100.0 4.5E-37 9.7E-42 284.2 9.0 185 49-244 3-192 (192)
21 cd02202 FtsZ_type2 FtsZ is a G 100.0 1.9E-32 4.1E-37 274.3 15.4 226 1-270 1-233 (349)
22 KOG2530 Members of tubulin/Fts 100.0 4.9E-32 1.1E-36 266.1 11.7 240 1-255 1-324 (483)
23 cd02191 FtsZ FtsZ is a GTPase 100.0 6.1E-28 1.3E-32 237.4 14.4 206 1-257 1-206 (303)
24 TIGR00065 ftsZ cell division p 99.9 6E-26 1.3E-30 226.6 13.6 214 4-268 20-233 (349)
25 cd02201 FtsZ_type1 FtsZ is a G 99.9 2.7E-25 5.8E-30 219.5 13.3 207 4-259 3-209 (304)
26 PRK13018 cell division protein 99.9 2.2E-24 4.9E-29 216.1 13.8 205 4-258 31-235 (378)
27 PF03953 Tubulin_C: Tubulin C- 99.9 2.1E-23 4.5E-28 179.9 9.0 123 261-383 1-126 (126)
28 PRK09330 cell division protein 99.9 9.4E-23 2E-27 204.6 12.2 207 3-258 15-221 (384)
29 PF14881 Tubulin_3: Tubulin do 99.8 1.3E-20 2.9E-25 171.3 12.2 149 82-242 17-180 (180)
30 COG0206 FtsZ Cell division GTP 99.5 6E-14 1.3E-18 138.4 12.3 147 104-259 73-219 (338)
31 PF10644 Misat_Tub_SegII: Misa 99.5 1.4E-14 3E-19 122.5 4.3 65 2-72 1-69 (115)
32 smart00865 Tubulin_C Tubulin/F 98.4 1.3E-07 2.8E-12 80.0 2.2 114 246-382 1-119 (120)
33 PF13809 Tubulin_2: Tubulin li 97.6 0.0013 2.8E-08 66.5 14.1 102 93-195 101-220 (345)
34 PLN02847 triacylglycerol lipas 76.9 3.9 8.4E-05 43.9 5.1 115 48-168 154-287 (633)
35 cd00741 Lipase Lipase. Lipase 64.6 9.7 0.00021 33.2 4.2 58 104-165 2-59 (153)
36 PRK14484 phosphotransferase ma 64.3 6.3 0.00014 33.7 2.8 30 113-144 41-70 (124)
37 PF03610 EIIA-man: PTS system 63.0 9.3 0.0002 31.8 3.6 33 112-144 39-71 (116)
38 PF12953 DUF3842: Domain of un 62.1 8.6 0.00019 32.9 3.1 27 142-168 7-34 (131)
39 PF06908 DUF1273: Protein of u 62.0 26 0.00057 31.8 6.6 109 112-239 27-136 (177)
40 cd00519 Lipase_3 Lipase (class 60.3 9.6 0.00021 35.7 3.6 75 99-178 97-171 (229)
41 TIGR00824 EIIA-man PTS system, 53.3 28 0.00061 29.1 4.9 35 112-146 40-74 (116)
42 cd00006 PTS_IIA_man PTS_IIA, P 52.2 36 0.00077 28.6 5.4 33 112-144 39-71 (122)
43 PF01764 Lipase_3: Lipase (cla 49.5 9.3 0.0002 32.4 1.4 56 102-161 35-91 (140)
44 PRK09461 ansA cytoplasmic aspa 45.6 72 0.0016 32.1 7.3 95 108-209 63-157 (335)
45 PLN02408 phospholipase A1 43.4 40 0.00086 34.4 5.0 65 111-179 179-245 (365)
46 COG0572 Udk Uridine kinase [Nu 42.4 25 0.00055 33.1 3.2 27 135-162 9-35 (218)
47 TIGR02364 dha_pts dihydroxyace 38.2 30 0.00066 29.5 2.8 29 113-142 41-70 (125)
48 PRK13660 hypothetical protein; 34.4 2.1E+02 0.0046 26.1 7.8 79 148-239 58-136 (182)
49 cd00411 Asparaginase Asparagin 31.2 1.5E+02 0.0032 29.7 6.9 93 109-209 61-155 (323)
50 PF00710 Asparaginase: Asparag 30.7 1.5E+02 0.0032 29.5 6.7 94 108-209 54-148 (313)
51 PTZ00489 glutamate 5-kinase; P 29.8 2E+02 0.0043 27.9 7.3 49 155-205 87-135 (264)
52 COG1528 Ftn Ferritin-like prot 29.6 30 0.00066 31.0 1.5 51 369-425 92-144 (167)
53 PF01713 Smr: Smr domain; Int 29.4 1.7E+02 0.0037 22.4 5.7 55 114-171 9-69 (83)
54 PF09370 TIM-br_sig_trns: TIM- 29.3 27 0.00058 33.8 1.1 33 115-155 2-34 (268)
55 PF08259 Periviscerokin: Periv 29.0 27 0.00057 16.7 0.5 8 255-262 3-10 (11)
56 PF03283 PAE: Pectinacetyleste 27.9 86 0.0019 31.9 4.6 49 106-161 133-183 (361)
57 PLN00131 hypothetical protein; 27.7 73 0.0016 28.1 3.4 36 108-149 57-92 (218)
58 PLN02802 triacylglycerol lipas 26.1 1.1E+02 0.0023 32.6 5.0 64 111-178 309-374 (509)
59 COG3969 Predicted phosphoadeno 25.0 2E+02 0.0043 29.1 6.3 48 109-161 9-56 (407)
60 TIGR02153 gatD_arch glutamyl-t 24.8 2.4E+02 0.0052 29.2 7.2 90 109-205 121-211 (404)
61 PRK15088 PTS system mannose-sp 23.7 1.3E+02 0.0028 30.1 4.9 35 112-146 41-75 (322)
62 COG2893 ManX Phosphotransferas 22.9 1.8E+02 0.0038 25.5 5.0 53 109-165 38-90 (143)
63 TIGR00519 asnASE_I L-asparagin 22.7 1.9E+02 0.0042 29.0 6.0 95 109-210 60-159 (336)
64 smart00870 Asparaginase Aspara 22.2 2.6E+02 0.0056 27.9 6.7 95 110-209 59-155 (323)
65 PF13508 Acetyltransf_7: Acety 21.7 1.1E+02 0.0023 23.0 3.1 32 131-165 30-61 (79)
66 PF02353 CMAS: Mycolic acid cy 21.3 1.3E+02 0.0028 29.3 4.3 64 98-168 28-92 (273)
67 KOG1794 N-Acetylglucosamine ki 20.4 5.4E+02 0.012 25.5 8.1 64 95-163 32-99 (336)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=5.1e-133 Score=954.32 Aligned_cols=434 Identities=53% Similarity=1.004 Sum_probs=423.1
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCccceeeeeCCCCCccccccccC
Q 013391 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (444)
Q Consensus 1 M~Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 80 (444)
|||||+||+||||||||++||+++|+||||.++|.+....+...++.++||+|+..+||+||+|+||+||+||+.+++++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~ 80 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP 80 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence 99999999999999999999999999999999999776666667899999999999999999999999999999999999
Q ss_pred CCcccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcC
Q 013391 81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (444)
Q Consensus 81 ~~~~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp 160 (444)
++.+|+|++++++++|+|||||+|+|+.|+++.|.++|+|||++|.||.||||+++||+|||||||+|+.|+|.|+++||
T Consensus 81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp 160 (443)
T COG5023 81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP 160 (443)
T ss_pred cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCcccc
Q 013391 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCL 240 (444)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (444)
||.+.+++|+|.++.++++|||||++|+++.|.++||+++++||++|+++|.+.+++++|+|.++|++||++++++|.++
T Consensus 161 kK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtsl 240 (443)
T COG5023 161 KKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSL 240 (443)
T ss_pred hhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhHhhcccccccCcccceeeccCcccccccccccccCHHHHHhhccCcCCcccccCCCCCchhheeccccCc
Q 013391 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (444)
Q Consensus 241 r~~~~~~~dl~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (444)
||||++|.||+++.+||||+|++||+.++|+|+++.....+++.|+.++++++|+|+|||++|+|++|+|++++.++||+
T Consensus 241 RfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~ 320 (443)
T COG5023 241 RFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGD 320 (443)
T ss_pred ecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcC
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhhccCCCccccccCCCccceeccCCC---CCCCcccccccCChhHHHHHHHHHHHHHhhhcccccccc
Q 013391 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---KGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHW 397 (444)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~---~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflH~ 397 (444)
+.++++++++.+++.|+...|++|+|+++++++|.++| ...++++|+|+|+|+|.+.|+++.+||++||+|||||||
T Consensus 321 v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhw 400 (443)
T COG5023 321 VDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHW 400 (443)
T ss_pred CCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999998 677899999999999999999999999999999999999
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 013391 398 YTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADDEE 434 (444)
Q Consensus 398 Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~~~~ 434 (444)
|.++||||+||.||++.++++.++|++++++..++++
T Consensus 401 Y~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~ 437 (443)
T COG5023 401 YVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDE 437 (443)
T ss_pred HhhccCcccchhhHHHHHHHHHHHHHHhccccccchh
Confidence 9999999999999999999999999999877765443
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=7.7e-112 Score=870.87 Aligned_cols=432 Identities=42% Similarity=0.825 Sum_probs=408.4
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcc--hhccccccccccCCCCCccceeeeeCCCCCccccccc
Q 013391 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSD--LQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRS 78 (444)
Q Consensus 1 M~Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~ 78 (444)
|||||+||+||||||||.+||+++|+||+++++|....... ...++.++||+|+.+++|+||||+||+||++|++++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999999987643321 1235678999999999999999999999999999999
Q ss_pred cCCCcccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhh
Q 013391 79 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (444)
Q Consensus 79 ~~~~~~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~ 158 (444)
++++++|+|++++.+++|+|||||+||+..|+++.|+++|+|||++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCcc
Q 013391 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTC 238 (444)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (444)
||++.+.+++|+|++..+++++++||++|+|++|.+++|+++++||++|.++|.+.++++.|+|+++|++||++|+++|+
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence 99999999999999767889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcchhHhhcccccccCcccceeeccCcccccccccccccCHHHHHhhccCcCCcccccCCCCCchhheecccc
Q 013391 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR 318 (444)
Q Consensus 239 ~~r~~~~~~~dl~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (444)
++||||.++.|++++++||||||++||++++++|+++.....+++++|.+|++++++++++++.++|.+|+|+++++++|
T Consensus 241 s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~R 320 (450)
T PLN00221 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYR 320 (450)
T ss_pred cccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHc
Confidence 99999999999999999999999999999999999987666788899999999999999999999999999999999999
Q ss_pred CcCChHHHHHHHHHhhccCCCccccccCCCccceeccCCCC--------CCCcccccccCChhHHHHHHHHHHHHHhhhc
Q 013391 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFR 390 (444)
Q Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~ 390 (444)
|++.+.++.+.+.+++.+....|++|+|+++++.+|.++|. +.++++++++|+|+|..+|+++.++|++||+
T Consensus 321 G~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf~ 400 (450)
T PLN00221 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYA 400 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888889999999999999999988763 3457899999999999999999999999999
Q ss_pred cccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 013391 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 432 (444)
Q Consensus 391 kkAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~~ 432 (444)
||||||||+++||||+||.||+++|++++++|+++++...++
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~ 442 (450)
T PLN00221 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEG 442 (450)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999987666553
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=4.6e-111 Score=864.70 Aligned_cols=429 Identities=42% Similarity=0.847 Sum_probs=405.9
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcc--hhccccccccccCCCCCccceeeeeCCCCCccccccc
Q 013391 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSD--LQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRS 78 (444)
Q Consensus 1 M~Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~ 78 (444)
|||||+||+||||||||.+||+++++||+++++|....+.. ...++.++||+|+.+++|+||||+||+||++|++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999999987643221 1235678999999999999999999999999999999
Q ss_pred cCCCcccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhh
Q 013391 79 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (444)
Q Consensus 79 ~~~~~~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~ 158 (444)
++++++|++++++.+++|+|||||+||+..|+++.|+++|+|||++|+||++|||+++||+|||||||+|++|+|.|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCcc
Q 013391 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTC 238 (444)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (444)
||++.+++++|+|++..+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|+
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence 99999999999999767899999999999999999999999999999999999999998899999999999999999999
Q ss_pred ccCCCCCCcchhHhhcccccccCcccceeeccCcccccccccccccCHHHHHhhccCcCCcccccCCCCCchhheecccc
Q 013391 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR 318 (444)
Q Consensus 239 ~~r~~~~~~~dl~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (444)
++||||.++.|++++++||||||++||++++++|+++.....+++.+|.+|++++++++++++.++|.+++||++++++|
T Consensus 241 ~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~R 320 (448)
T PTZ00335 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYR 320 (448)
T ss_pred ccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHc
Confidence 99999999999999999999999999999999999987667788999999999999999999999999999999999999
Q ss_pred CcCChHHHHHHHHHhhccCCCccccccCCCccceeccCCCC--------CCCcccccccCChhHHHHHHHHHHHHHhhhc
Q 013391 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFR 390 (444)
Q Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~ 390 (444)
|++...++.+.+.+++.+....|++|+|+++++.+|..+|. +..+++++++|+|+|..+|+++.++|++||+
T Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~ 400 (448)
T PTZ00335 321 GDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYA 400 (448)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988889999999999999999988764 3467899999999999999999999999999
Q ss_pred cccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHhcC
Q 013391 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDAT 429 (444)
Q Consensus 391 kkAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~ 429 (444)
||||||||+++||||+||.||+++|++++++|+++.+..
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~ 439 (448)
T PTZ00335 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES 439 (448)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999986443
No 4
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=8.1e-110 Score=856.52 Aligned_cols=431 Identities=90% Similarity=1.448 Sum_probs=411.6
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCccceeeeeCCCCCccccccccC
Q 013391 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (444)
Q Consensus 1 M~Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 80 (444)
|||||+||+||||||||.+||+++++||+++++|.+....+...++.++||+|+.+++|+||+|+||+||++|+.++.++
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 80 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGP 80 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccc
Confidence 99999999999999999999999999999999987654433333567899999999999999999999999999998888
Q ss_pred CCcccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcC
Q 013391 81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (444)
Q Consensus 81 ~~~~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp 160 (444)
++.+|++++++.+++|+|||||+||+..|++..++++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||
T Consensus 81 ~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~ 160 (445)
T PTZ00010 81 YGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYP 160 (445)
T ss_pred hhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCcccc
Q 013391 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCL 240 (444)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (444)
++.+++++|+|++..+++++++||++|++++|.+++|+++++||++|+++|.+.+++++|+|+++|++||++|+++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~~~ 240 (445)
T PTZ00010 161 DRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCL 240 (445)
T ss_pred ccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhccccccce
Confidence 99999999999977789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhHhhcccccccCcccceeeccCcccccccccccccCHHHHHhhccCcCCcccccCCCCCchhheeccccCc
Q 013391 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (444)
Q Consensus 241 r~~~~~~~dl~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (444)
||||.++.|++++.+||||||++||++++++|+.+.....++++++.+|++++++++++++.++|.+|+|+++++++||+
T Consensus 241 Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~RG~ 320 (445)
T PTZ00010 241 RFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGR 320 (445)
T ss_pred ecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHcCC
Confidence 99999999999999999999999999999999998766778899999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhhccCCCccccccCCCccceeccCCCCCCCcccccccCChhHHHHHHHHHHHHHhhhccccccccccC
Q 013391 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400 (444)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflH~Y~~ 400 (444)
+.+.++.+.+.+++.+..+.|++|+|+++++..|+++|...++++++++|+|+|..+|+++.++|++||+||||||||++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~lsNstsi~~~~~~i~~~f~~m~~rrAflh~Y~~ 400 (445)
T PTZ00010 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSVTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTG 400 (445)
T ss_pred CCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcCccceEEEecCCcHHHHHHHHHHHHHHHHHhcCchhhhhhc
Confidence 99999999999888888999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHhcCCC
Q 013391 401 EGMDEMEFTEAESNMNDLVAEYQQYQDATAD 431 (444)
Q Consensus 401 ~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~ 431 (444)
+||||+||.||++.|++++++|+++.+...+
T Consensus 401 eGmee~ef~EA~~~l~~li~~Y~~~~~~~~~ 431 (445)
T PTZ00010 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATVE 431 (445)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999998766533
No 5
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=3e-109 Score=854.36 Aligned_cols=428 Identities=98% Similarity=1.524 Sum_probs=409.4
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCccceeeeeCCCCCccccccccC
Q 013391 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (444)
Q Consensus 1 M~Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 80 (444)
|||||+||+||||||||.+||+++++||+++++|.+....+...++.++||+|..+++|+||+|+||+||++|++++.++
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 80 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCc
Confidence 99999999999999999999999999999999887755444333577899999999999999999999999999999988
Q ss_pred CCcccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcC
Q 013391 81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (444)
Q Consensus 81 ~~~~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp 160 (444)
++.+|++++++++++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|++.|+|+||
T Consensus 81 ~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~ 160 (447)
T PLN00220 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (447)
T ss_pred cccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCcccc
Q 013391 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCL 240 (444)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (444)
++.+++++|+|++..+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||+.++++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~sl 240 (447)
T PLN00220 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (447)
T ss_pred ccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccchhh
Confidence 99999999999977899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhHhhcccccccCcccceeeccCcccccccccccccCHHHHHhhccCcCCcccccCCCCCchhheeccccCc
Q 013391 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (444)
Q Consensus 241 r~~~~~~~dl~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (444)
||||.++.+++++.++|||+|++||+.++++|+.+.....++++++.+++++++.+++++.+++|.+|+|+++++++||+
T Consensus 241 RFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~RG~ 320 (447)
T PLN00220 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (447)
T ss_pred ccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHcCC
Confidence 99999999999999999999999999999999988766678899999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhhccCCCccccccCCCccceeccCCCCCCCcccccccCChhHHHHHHHHHHHHHhhhccccccccccC
Q 013391 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400 (444)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflH~Y~~ 400 (444)
+.+.++.+.+.+++.+..+.|++|+|+++++..|+++|.+..+++++|+|+|+|..+|+++.++|++||+||||||||++
T Consensus 321 ~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~rkAflh~Y~~ 400 (447)
T PLN00220 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400 (447)
T ss_pred CCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCcceeeEEecCchHHHHHHHHHHHHHHHHHhcCcchhhhcc
Confidence 99999999998888888899999999999999999999888899999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 013391 401 EGMDEMEFTEAESNMNDLVAEYQQYQDA 428 (444)
Q Consensus 401 ~Gmee~eF~ea~~~l~~l~~~Y~~~~~~ 428 (444)
+||||+||.||+++|++++++|+++.+.
T Consensus 401 ~Gmee~ef~ea~~~l~~li~~Y~~~~~~ 428 (447)
T PLN00220 401 EGMDEMEFTEAESNMNDLVSEYQQYQDA 428 (447)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998654
No 6
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=5.1e-107 Score=835.13 Aligned_cols=427 Identities=35% Similarity=0.696 Sum_probs=399.4
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCccceeeeeCCCCCccccccccC
Q 013391 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (444)
Q Consensus 1 M~Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 80 (444)
|||||+||+||||||||.+||+++++||+++++|.+..+.+...++.++||+|+.+++|+||+|+||+||++|++++.++
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 81 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSE 81 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCc
Confidence 69999999999999999999999999999999987644333334677899999999999999999999999999999888
Q ss_pred CCcccCCCceeeccC--CCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhh
Q 013391 81 FGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (444)
Q Consensus 81 ~~~~~~~~~~~~~~~--g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~ 158 (444)
++++|++++++++++ |+|||||+||+ .|++..|+++|+||+++|.||++|||+++||++||||||+|++|+|.|+|+
T Consensus 82 ~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~ 160 (454)
T PLN00222 82 YRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDR 160 (454)
T ss_pred cccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhh
Confidence 889999999999986 69999999976 699999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEEeecCC-CCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCc
Q 013391 159 YPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVT 237 (444)
Q Consensus 159 yp~~~i~~~~v~P~~-~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 237 (444)
||++.+++++|+|++ ..+++++++||++|+|++|.+++|+++++||++|+++|.+.+++++|+|+++|++||++|+++|
T Consensus 161 y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~~T 240 (454)
T PLN00222 161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAST 240 (454)
T ss_pred cCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCCcc
Confidence 999999999999985 3578899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcchhHhhcccccccCcccceeeccCcccccc-cccccccCHHHHHhhccCcCCcccccCCCC-----Cchh
Q 013391 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG-SQQYRALTVPELTQQMWDAKNMMCAADPRH-----GRYL 311 (444)
Q Consensus 238 ~~~r~~~~~~~dl~~l~~~L~P~p~~~fl~~s~~P~~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~-----~~~l 311 (444)
+++||||.++.|++++.+||||||++||++++++|+.+.. ...++..++.++++++++++++|..++|.+ |+|+
T Consensus 241 ~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k~l 320 (454)
T PLN00222 241 TTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYI 320 (454)
T ss_pred cccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccchH
Confidence 9999999999999999999999999999999999997642 345677899999999999999999998887 8999
Q ss_pred heeccccCcCChHHHHHHHHHhhccCCCccccccCCCccceeccCCCC---CCCcccccccCChhHHHHHHHHHHHHHhh
Q 013391 312 TASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK---GLKMASTFIGNSTSIQEMFRRVSEQFTAM 388 (444)
Q Consensus 312 s~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~---~~~~s~~~l~N~t~i~~~l~~l~~~~~~m 388 (444)
++++++||++.+.++.+.+.+++.++.+.|++|+|+++++++|.++|. +.+.++++|+|+|+|..+|+++.++|++|
T Consensus 321 a~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~~f~~m 400 (454)
T PLN00222 321 SILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLANHTSIRHLFSKCLSQYDKL 400 (454)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888999999999999999998874 46788999999999999999999999999
Q ss_pred hccccccccccCCCCC----hhhHHHHHHHHHHHHHHHHHHHhc
Q 013391 389 FRRKAFLHWYTGEGMD----EMEFTEAESNMNDLVAEYQQYQDA 428 (444)
Q Consensus 389 ~~kkAflH~Y~~~Gme----e~eF~ea~~~l~~l~~~Y~~~~~~ 428 (444)
|+||||||||+++||+ ++||.||+++|++|+++|++++..
T Consensus 401 f~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~ 444 (454)
T PLN00222 401 RKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESP 444 (454)
T ss_pred HhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999993 899999999999999999987534
No 7
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=5e-107 Score=831.10 Aligned_cols=420 Identities=38% Similarity=0.749 Sum_probs=397.1
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCccceeeeeCCCCCccccccccCC
Q 013391 2 REILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPF 81 (444)
Q Consensus 2 ~Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~ 81 (444)
||||+||+||||||||.+||+++++||+++++|....+.+...+..++||+|+.+++|+||+|+||+||++|++++.+++
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~ 80 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEY 80 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCcc
Confidence 79999999999999999999999999999999876544332345778999999999999999999999999999999988
Q ss_pred CcccCCCceeeccC--CCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhc
Q 013391 82 GQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159 (444)
Q Consensus 82 ~~~~~~~~~~~~~~--g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~y 159 (444)
+++|+|++++.+++ |+|||||+||+ .|++..|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+|
T Consensus 81 ~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y 159 (431)
T cd02188 81 RNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRY 159 (431)
T ss_pred ccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHc
Confidence 88999999999987 99999999976 6999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEEeecCCCC-CCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCcc
Q 013391 160 PDRMMLTFSVFPSPKV-SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTC 238 (444)
Q Consensus 160 p~~~i~~~~v~P~~~~-~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (444)
|++.+++++|+|++.. +++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|+++|++||++|+++|+
T Consensus 160 ~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~t~ 239 (431)
T cd02188 160 PKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTT 239 (431)
T ss_pred CcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCccc
Confidence 9999999999998543 488999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcchhHhhcccccccCcccceeeccCcccccc-cccccccCHHHHHhhccCcCCcccccCC-CCCchhheecc
Q 013391 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG-SQQYRALTVPELTQQMWDAKNMMCAADP-RHGRYLTASAM 316 (444)
Q Consensus 239 ~~r~~~~~~~dl~~l~~~L~P~p~~~fl~~s~~P~~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~-~~~~~ls~~~~ 316 (444)
++||||.++.|++++++||||||++||++++++|+.+.. ...++..+|.++++.+++++++|+.++| .+++|+|++++
T Consensus 240 ~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~~~ 319 (431)
T cd02188 240 TLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISILNI 319 (431)
T ss_pred ceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHHHH
Confidence 999999999999999999999999999999999999876 4667889999999999999999999998 89999999999
Q ss_pred ccCcCChHHHHHHHHHhhccCCCccccccCCCccceeccCCCC---CCCcccccccCChhHHHHHHHHHHHHHhhhcccc
Q 013391 317 FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK---GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKA 393 (444)
Q Consensus 317 ~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~---~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkA 393 (444)
+||++.+.++.+.+.+++.+..+.|++|+|+++++++|+.+|. +.+.++++++|+|+|.++|+++.++|++||+|||
T Consensus 320 ~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~kf~~mf~krA 399 (431)
T cd02188 320 IQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTAHRVSGLMLANHTSIASLFERILKQFDKLRKRRA 399 (431)
T ss_pred HcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCCCceeEEEecCChHHHHHHHHHHHHHHHHHhhCc
Confidence 9999999999999999988888889999999999999988774 4578999999999999999999999999999999
Q ss_pred ccccccCCCCC---hhhHHHHHHHHHHHHHHH
Q 013391 394 FLHWYTGEGMD---EMEFTEAESNMNDLVAEY 422 (444)
Q Consensus 394 flH~Y~~~Gme---e~eF~ea~~~l~~l~~~Y 422 (444)
|||||+++||| ++||.||+++|++|+++|
T Consensus 400 flH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 400 FLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred hhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 99999999999 999999999999999998
No 8
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=1.4e-106 Score=829.55 Aligned_cols=424 Identities=88% Similarity=1.417 Sum_probs=404.5
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCccceeeeeCCCCCccccccccCC
Q 013391 2 REILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPF 81 (444)
Q Consensus 2 ~Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~ 81 (444)
||||+||+||||||||.+||+++++||+++++|.+....+...+..++||+|+.+++|+||+|+||+||++|++++.+++
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~ 80 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPF 80 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCcc
Confidence 79999999999999999999999999999998876443332235678999999999999999999999999999988888
Q ss_pred CcccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCC
Q 013391 82 GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (444)
Q Consensus 82 ~~~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~ 161 (444)
+.+|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||+
T Consensus 81 ~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~ 160 (425)
T cd02187 81 GQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 160 (425)
T ss_pred cceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCccccC
Q 013391 162 RMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLR 241 (444)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 241 (444)
+.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|+++|
T Consensus 161 ~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s~R 240 (425)
T cd02187 161 RIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240 (425)
T ss_pred cceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhccccccceeee
Confidence 99999999998666699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhHhhcccccccCcccceeeccCcccccccccccccCHHHHHhhccCcCCcccccCCCCCchhheeccccCcC
Q 013391 242 FPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKM 321 (444)
Q Consensus 242 ~~~~~~~dl~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~ 321 (444)
|||.++.|++++++||||||++||++++++|+++.....++++++.+|+++++.+++++..++|.+++|+++++++||++
T Consensus 241 fpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~ 320 (425)
T cd02187 241 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRGRV 320 (425)
T ss_pred cCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999987666788899999999999999999889999999999999999999
Q ss_pred ChHHHHHHHHHhhccCCCccccccCCCccceeccCCCCCCCcccccccCChhHHHHHHHHHHHHHhhhccccccccccCC
Q 013391 322 STKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 401 (444)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflH~Y~~~ 401 (444)
.+.++.+.+.+++.+..+.|++|+|+++++..|+++|.+.++++++|+|+|+|.++|+++.++|++||+||||||||+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~kkAflh~Y~~~ 400 (425)
T cd02187 321 SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGE 400 (425)
T ss_pred CHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCCcceeEEEecCCcHHHHHHHHHHHHHHHHHhcCcchhhhhcc
Confidence 99999999999988889999999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHH
Q 013391 402 GMDEMEFTEAESNMNDLVAEYQQY 425 (444)
Q Consensus 402 Gmee~eF~ea~~~l~~l~~~Y~~~ 425 (444)
||||+||.||++.|++++++|+++
T Consensus 401 G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 401 GMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999875
No 9
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=2.1e-106 Score=829.61 Aligned_cols=423 Identities=42% Similarity=0.834 Sum_probs=401.3
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcc--hhccccccccccCCCCCccceeeeeCCCCCcccccccc
Q 013391 2 REILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSD--LQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSG 79 (444)
Q Consensus 2 ~Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~ 79 (444)
||||+||+||||||||.+||+++++||+++++|.+..+.. ...+..++||+|+.+++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 7999999999999999999999999999999987644322 23457789999999999999999999999999999988
Q ss_pred CCCcccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhc
Q 013391 80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159 (444)
Q Consensus 80 ~~~~~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~y 159 (444)
+.+.+|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCccc
Q 013391 160 PDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCC 239 (444)
Q Consensus 160 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 239 (444)
|++++++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|+++|++||++|+++|++
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~ 240 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccc
Confidence 99999999999996667899999999999999999999999999999999999999998999999999999999999999
Q ss_pred cCCCCCCcchhHhhcccccccCcccceeeccCcccccccccccccCHHHHHhhccCcCCcccccCCCCCchhheeccccC
Q 013391 240 LRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRG 319 (444)
Q Consensus 240 ~r~~~~~~~dl~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 319 (444)
+||||.++.|+++++++|||||++||++++++|+++.....+++.+|.+|++++++++++|+.++|.+++|+++++++||
T Consensus 241 ~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG 320 (434)
T cd02186 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG 320 (434)
T ss_pred eecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcC
Confidence 99999999999999999999999999999999999876677888999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhhccCCCccccccCCCccceeccCCCC--------CCCcccccccCChhHHHHHHHHHHHHHhhhcc
Q 013391 320 KMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRR 391 (444)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~k 391 (444)
++.+.++.+.+.+++.+..+.|++|+|+++++.+|..+|. +.++++++++|+|+|.++|+++.++|++||+|
T Consensus 321 ~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~r 400 (434)
T cd02186 321 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSK 400 (434)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHHHHHHHHhh
Confidence 9999999999988888888999999999999999988764 34578999999999999999999999999999
Q ss_pred ccccccccCCCCChhhHHHHHHHHHHHHHHHHH
Q 013391 392 KAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424 (444)
Q Consensus 392 kAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~ 424 (444)
|||||||+++||||+||.||+++|++++++|++
T Consensus 401 kAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~ 433 (434)
T cd02186 401 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 433 (434)
T ss_pred cchhhhhcCcCCchHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999986
No 10
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=6.2e-106 Score=827.41 Aligned_cols=416 Identities=34% Similarity=0.676 Sum_probs=392.3
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHhC-CCCCCCCCCCcchhccccccccccCC-----CC--CccceeeeeCCCCCc
Q 013391 1 MREILHIQGGQCGNQIGAKFWEVICDEHG-IDHTGKYSGDSDLQLERINVYYNEAS-----GG--RYVPRAVLMDLEPGT 72 (444)
Q Consensus 1 M~Eiitiq~Gq~gNqIG~~fw~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~F~e~~-----~~--~~~pR~llvD~e~~~ 72 (444)
|||||+||+||||||||.+||+++|+||+ ++++|.+ .++.++||+|.+ .+ +|+||||+||+||++
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~-------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~v 73 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY-------DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGV 73 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc-------cccccceecccccccccCCCccccCcccccCCCccH
Confidence 99999999999999999999999999999 7777754 246789998532 23 499999999999999
Q ss_pred cccccccCCCcccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHH
Q 013391 73 MDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLI 152 (444)
Q Consensus 73 i~~~~~~~~~~~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~ll 152 (444)
|++++.++++++|++++++++++|+||||++||+..|+++.|+++|+||+++|+||++|||+++||+|||||||+|+.|+
T Consensus 74 i~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ll 153 (465)
T PTZ00387 74 LNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRIL 153 (465)
T ss_pred HHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHH
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCC-------------
Q 013391 153 SKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLAT------------- 219 (444)
Q Consensus 153 e~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~------------- 219 (444)
|.|+|+||++.+++++|+|+ ..++++++|||++|+|++|.+++|+++++||++|.++|.+.++++.
T Consensus 154 e~l~d~y~~~~~~~~~V~P~-~~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~~~ 232 (465)
T PTZ00387 154 GMLEDEFPHVFRFCPVVFPS-AVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQ 232 (465)
T ss_pred HHHHHhcccCceeeeEecCC-CCCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccccccccc
Confidence 99999999999999999998 5688999999999999999999999999999999999988777653
Q ss_pred --------------CCchhhhHHHHHHhccCccccCCCCCCcchhHhhcccccccCcccceeeccCcccccccccccccC
Q 013391 220 --------------PTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALT 285 (444)
Q Consensus 220 --------------~~~~~~N~~ia~~i~~~t~~~r~~~~~~~dl~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t 285 (444)
++|+++|++||++|+++|+++||||.+|.|++++.+||||||++||++++++|+.+.....++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~~s 312 (465)
T PTZ00387 233 PHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGPRR 312 (465)
T ss_pred ccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhcccccCC
Confidence 889999999999999999999999999999999999999999999999999999886666778899
Q ss_pred HHHHHhhccCcCCcccccCCCCCchhheeccccCcCChHHHHHHHHHhhccCCCccccccCCCccceeccCCCCCCCccc
Q 013391 286 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMAS 365 (444)
Q Consensus 286 ~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~ 365 (444)
|.+|++++++++++|+.++|.+++|+++++++||+....++.+.+.+++. .+.|++|+|+++++++|+++|....+++
T Consensus 313 ~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~--~~~f~~W~p~~~~~~~~~~~~~~~~~s~ 390 (465)
T PTZ00387 313 LDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKE--QLNMIYWNEDGFKTGLCNVSPLGQPYSL 390 (465)
T ss_pred HHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhc--cccccccCCCceEEEeeccCCCCCceeE
Confidence 99999999999999999999999999999999999888899988888764 4889999999999999999998889999
Q ss_pred ccccCChhHHHHHHHHHHHHHhhhccccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 013391 366 TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQD 427 (444)
Q Consensus 366 ~~l~N~t~i~~~l~~l~~~~~~m~~kkAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~ 427 (444)
++++|+|+|..+|++++++|++||+||||||||+ +|||++||.||+++|++++++|++++.
T Consensus 391 ~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~~ 451 (465)
T PTZ00387 391 LCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQT 451 (465)
T ss_pred EEecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999 799999999999999999999999863
No 11
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=100.00 E-value=3.3e-103 Score=750.33 Aligned_cols=425 Identities=37% Similarity=0.728 Sum_probs=398.0
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCccceeeeeCCCCCccccccccC
Q 013391 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (444)
Q Consensus 1 M~Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 80 (444)
|+||||||+||||||||.+||+++|.||+|.++|......+...++.++||++..++.|+|||||||+||+||+.+.+++
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~ 81 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSP 81 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccch
Confidence 58999999999999999999999999999999999766555666889999999999999999999999999999999999
Q ss_pred CCcccCCCceeec--cCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhh
Q 013391 81 FGQIFRPDNFVFG--QSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (444)
Q Consensus 81 ~~~~~~~~~~~~~--~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~ 158 (444)
++++|+++|++.. ..|+|||||.||. .|++..|+++|.|+|++|.||+|.||+++||++||||||+||.|+|.|+|.
T Consensus 82 ~s~l~n~eni~~s~~ggGAGNNWA~GY~-~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~dr 160 (448)
T KOG1374|consen 82 YSGLYNPENIFLSDHGGGAGNNWASGYS-QGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDR 160 (448)
T ss_pred hhcccCccceEEecCCCCcccccccccc-cchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHh
Confidence 9999999999765 4689999999986 599999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEEeecCC-CCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCc
Q 013391 159 YPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVT 237 (444)
Q Consensus 159 yp~~~i~~~~v~P~~-~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 237 (444)
||||.+.+++|||.. ..+|++|||||++|+|++|.+.+|+++++||.+|.++|.+.+.+.+|+|+++|+++|.+|++.|
T Consensus 161 ypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~st 240 (448)
T KOG1374|consen 161 YPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSAST 240 (448)
T ss_pred chhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999984 3789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcchhHhhcccccccCcccceeeccCccccccccc--ccccCHHHHHhhccCcCCcccccCC---CCCchhh
Q 013391 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQ--YRALTVPELTQQMWDAKNMMCAADP---RHGRYLT 312 (444)
Q Consensus 238 ~~~r~~~~~~~dl~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~--~~~~t~~~l~~~~~~~~~~~~~~~~---~~~~~ls 312 (444)
.++||||+++.++..+...|+|+|++|||+++++|+++..... +++.++.+.+++++.|+++|.+..+ .+..|++
T Consensus 241 ~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~~s 320 (448)
T KOG1374|consen 241 TTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCYIS 320 (448)
T ss_pred ccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcchHh
Confidence 9999999999999999999999999999999999999865433 5888999999999999999988765 3346899
Q ss_pred eeccccCcCChHHHHHHHHHhhccCCCccccccCCCccceeccCCC---CCCCcccccccCChhHHHHHHHHHHHHHhhh
Q 013391 313 ASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---KGLKMASTFIGNSTSIQEMFRRVSEQFTAMF 389 (444)
Q Consensus 313 ~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~---~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~ 389 (444)
...++.|.+.+..+.+.+.+++.+....|++|.|.++.+...+..| ..++.|+.+|+|+|+|...|++++.+|+||+
T Consensus 321 i~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~~~vSglml~N~t~i~~lfe~~~~qydklr 400 (448)
T KOG1374|consen 321 ILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRAHRVSGLMLANSTSIVSLFERILGQYDKLR 400 (448)
T ss_pred HHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccccceeeeeeccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888899999999999998766554 4578899999999999999999999999999
Q ss_pred ccccccccccCCCCChh---hHHHHHHHHHHHHHHHHHHH
Q 013391 390 RRKAFLHWYTGEGMDEM---EFTEAESNMNDLVAEYQQYQ 426 (444)
Q Consensus 390 ~kkAflH~Y~~~Gmee~---eF~ea~~~l~~l~~~Y~~~~ 426 (444)
+||||||+|.++||+++ ||.|+++.+++++++|+...
T Consensus 401 k~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~ 440 (448)
T KOG1374|consen 401 KKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAE 440 (448)
T ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999 99999999999999998863
No 12
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=1.6e-98 Score=758.79 Aligned_cols=379 Identities=37% Similarity=0.734 Sum_probs=363.9
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCccceeeeeCCCCCccccccccCC
Q 013391 2 REILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPF 81 (444)
Q Consensus 2 ~Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~ 81 (444)
||||+||+||||||||.+||+++++|| |+||+|+||+||++|++++.++.
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh------------------------------~~pR~v~iD~e~~~i~~i~~~~~ 50 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH------------------------------LKARAVLIDMEEGVVNEILKGPL 50 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh------------------------------cCCcceeccCChhHHHHHhcCcc
Confidence 699999999999999999999999997 57999999999999999999888
Q ss_pred CcccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCC
Q 013391 82 GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (444)
Q Consensus 82 ~~~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~ 161 (444)
+++|++++++.+++|+||||++||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|+.|+|.|+|+||+
T Consensus 51 ~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~ 130 (379)
T cd02190 51 RDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPE 130 (379)
T ss_pred ccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCccccC
Q 013391 162 RMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLR 241 (444)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 241 (444)
+.+++++|+|+. .+++++++||++|+|++|.+++|+++++||++|. +|+++|++||++|+++|+++|
T Consensus 131 ~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~~r 197 (379)
T cd02190 131 VYRFVTSVYPSA-DDDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSSMR 197 (379)
T ss_pred cceEEEeecCCC-CCCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccceee
Confidence 999999999995 5888999999999999999999999999999997 699999999999999999999
Q ss_pred CCCCCcchhHhhcccccccCcccceeeccCcccccccccccccCHHHHHhhccCcCCcccccCCCCCchhheeccccCcC
Q 013391 242 FPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKM 321 (444)
Q Consensus 242 ~~~~~~~dl~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~ 321 (444)
|||.++.|++++.++|||||++||++++++|+++.....+++.++.+|++++++++++|+.++|.+++|+++++++||+.
T Consensus 198 f~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG~~ 277 (379)
T cd02190 198 FEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRGNV 277 (379)
T ss_pred cccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999986666678899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhccCCCccccccCCCccceeccCCCCCCCcccccccCChhHHHHHHHHHHHHHhhhccccccccccCC
Q 013391 322 STKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 401 (444)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflH~Y~~~ 401 (444)
.+.++.+.+.+++.+ ..|++|+|+++++..|+++|...++++++++|+|+|..+|+++.++|++||+||||||||+++
T Consensus 278 ~~~ei~~~~~~l~~~--~~fv~W~p~~~~~~~~~~~~~~~~~s~~~lsNsTsI~~~f~~i~~~f~~mf~krAflh~Y~~e 355 (379)
T cd02190 278 SVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVPPVGHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQV 355 (379)
T ss_pred CHHHHHHHHHHHhcc--CcCcCcCCCcEEEeecccCCCCcceeEEEecCccHHHHHHHHHHHHHHHHHhcccchhhhhCC
Confidence 999998888877655 679999999999999999998888999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHH
Q 013391 402 GMDEMEFTEAESNMNDLVAEYQQY 425 (444)
Q Consensus 402 Gmee~eF~ea~~~l~~l~~~Y~~~ 425 (444)
||||+||.||+++|++++++|+++
T Consensus 356 G~ee~ef~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 356 GMEQGDFTEALESISNLIDEYDYL 379 (379)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999863
No 13
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=2.6e-98 Score=772.09 Aligned_cols=410 Identities=28% Similarity=0.553 Sum_probs=377.1
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCccceeeeeCCCCCccccccccCCC-
Q 013391 4 ILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFG- 82 (444)
Q Consensus 4 iitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~- 82 (444)
||+||+||||||||.+||+++++||+++++|.+. ...+..++||.|..+++|+||+|+||+||++|++++.++.+
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~----~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~ 77 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK----YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGG 77 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc----ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCc
Confidence 8999999999999999999999999999887653 12456789999999999999999999999999999886643
Q ss_pred -cccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCC
Q 013391 83 -QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (444)
Q Consensus 83 -~~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~ 161 (444)
++|++++++.+++|+|||||+||+..|+++.|+++|+|||++|+||++|||+++||++||||||+|++|+|.|+|+||+
T Consensus 78 ~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~ 157 (446)
T cd02189 78 TWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPE 157 (446)
T ss_pred ccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCccccC
Q 013391 162 RMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLR 241 (444)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 241 (444)
+.+++++|+|+ ..+++++|+||++|+|++|.+++|+++++||++|.++|.+.++++.++|+++|++||++|+++|++.|
T Consensus 158 ~~~~~~~v~P~-~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~~r 236 (446)
T cd02189 158 SLLLNIVVWPY-TTGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQPSL 236 (446)
T ss_pred cceeeeeccCC-CCCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhHhh
Confidence 99999999998 47899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-C-------CCCcchhHhhcccccccCcccceeeccCcccccccccccccCHHHHHhhcc---CcCCcccc--------
Q 013391 242 F-P-------GQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMW---DAKNMMCA-------- 302 (444)
Q Consensus 242 ~-~-------~~~~~dl~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~---~~~~~~~~-------- 302 (444)
+ | |..+.|++++.++|||+|++||++++++|+++.....++..+|.+++++++ .+++++..
T Consensus 237 ~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~~~ 316 (446)
T cd02189 237 DSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTVRP 316 (446)
T ss_pred ccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhcccccccccccccccc
Confidence 6 5 346899999999999999999999999999987777788999999999865 56666544
Q ss_pred -----------cCCCCCchhheeccccCcCChHHHHHHHHHhhccCCCccccccCCCccceeccCCCC--CCCccccccc
Q 013391 303 -----------ADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK--GLKMASTFIG 369 (444)
Q Consensus 303 -----------~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--~~~~s~~~l~ 369 (444)
+++..++|+++++++||+....++... + +....|++|+|+++++.+|..++. ..++++++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~---~--~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~s~~~l~ 391 (446)
T cd02189 317 EGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERK---F--RDPLLYVNWSPSPVRFSISSHKRSFSKYEKSVTLVS 391 (446)
T ss_pred ccccccccccccCCcccceeeeeeeeeCCCchHHHHHH---H--hccCcCCCcCCCCEeeeecCCCCCcCCcceeEEEEe
Confidence 346788999999999998776666543 2 467889999999999999988764 4688999999
Q ss_pred CChhHHHHHHHHHHHHHhhhccccccccccCCCCChhhHHHHHHHHHHHHHHHH
Q 013391 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQ 423 (444)
Q Consensus 370 N~t~i~~~l~~l~~~~~~m~~kkAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~ 423 (444)
|+|+|..+|++++++|++||+||||||||+++||||+||.||++.|++++++|+
T Consensus 392 Nst~i~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 392 NSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999996
No 14
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=2.6e-90 Score=703.23 Aligned_cols=381 Identities=51% Similarity=0.947 Sum_probs=362.7
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCccceeeeeCCCCCccccccccCCC
Q 013391 3 EILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFG 82 (444)
Q Consensus 3 Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~ 82 (444)
|||+||+||||||||.+||+++ |+||+||++|+.++.++.+
T Consensus 1 eii~i~vGq~G~qig~~~w~~~---------------------------------------i~iD~e~~~i~~i~~~~~~ 41 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL---------------------------------------ILVDLDPRVINEILQGQLS 41 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH---------------------------------------HcccCCcchhhhhhccccc
Confidence 8999999999999999999965 9999999999999988888
Q ss_pred cccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCc
Q 013391 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (444)
Q Consensus 83 ~~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~ 162 (444)
.+|++++++.+++|+||||++||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|+.|+|.|+|+||++
T Consensus 42 ~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~ 121 (382)
T cd06059 42 KLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKI 121 (382)
T ss_pred ccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCccccCC
Q 013391 163 MMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRF 242 (444)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 242 (444)
.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+.+..++|+++|++||++|+++|.++|+
T Consensus 122 ~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r~ 201 (382)
T cd06059 122 LINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRF 201 (382)
T ss_pred ceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhccccccccc
Confidence 99999999996555589999999999999999999999999999999999888888899999999999999999999999
Q ss_pred CCCCcchhHhhcccccccCcccceeeccCcccccccccccccCHHHHHhhccCcCCcccccCCCCCchhheeccccCcCC
Q 013391 243 PGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMS 322 (444)
Q Consensus 243 ~~~~~~dl~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~ 322 (444)
||.++.|+++++++|||||++||++++++|+++.....++..++.+++++++.+++++..+++..++|+++++++||+..
T Consensus 202 ~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~~ 281 (382)
T cd06059 202 PGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGDVF 281 (382)
T ss_pred CCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999876666788899999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHhhccCCCccccccCCCccceeccCCCC-CCCcccccccCChhHHHHHHHHHHHHHhhhccccccccccCC
Q 013391 323 TKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK-GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 401 (444)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~-~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflH~Y~~~ 401 (444)
..++.+.+.+++.+.... +|+|+++++..|++++. ...+++++++|+|+|.++|+++.++|++||+||||||||+++
T Consensus 282 ~~~v~~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~~~~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~rAflh~Y~~~ 359 (382)
T cd06059 282 QSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPRAELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGE 359 (382)
T ss_pred HHHHHHHHHHHHHhcccc--cCCCCcEEEEecCCCCCcCcceeEEEecCchHHHHHHHHHHHHHHHHHhhCcchhhhcCc
Confidence 889988888877665443 89999999999999987 888999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHH
Q 013391 402 GMDEMEFTEAESNMNDLVAEYQQ 424 (444)
Q Consensus 402 Gmee~eF~ea~~~l~~l~~~Y~~ 424 (444)
||||+||.||+++|++++++|++
T Consensus 360 G~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 360 GMDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred CCchHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999963
No 15
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=100.00 E-value=3e-87 Score=638.93 Aligned_cols=404 Identities=42% Similarity=0.809 Sum_probs=379.9
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcch--hccccccccccCCCCCccceeeeeCCCCCccccccc
Q 013391 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDL--QLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRS 78 (444)
Q Consensus 1 M~Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~ 78 (444)
|||||.|++||.|.|||++.|+++|.||+|.++|..+.+.+. ..+.+++||.++..++++||+++||+||. ||+++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 999999999999999999999999999999999998765543 34467899999999999999999999999 999999
Q ss_pred cCCCcccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhh
Q 013391 79 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (444)
Q Consensus 79 ~~~~~~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~ 158 (444)
++|+.+|||++++.++++++||+|+|+|+.|+|..+..+++||+.++.|..||||.++||+|||||||+++.++|.+..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCcc
Q 013391 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTC 238 (444)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (444)
|+||..+.++++|.+..+..+++|||++|+.+...+++|+.+++||++++.+|.+++.++.|+|.++|++|+++++++|+
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsita 239 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcchhHhhcccccccCcccceeeccCcccccccccccccCHHHHHhhccCcCCcccccCCCCCchhheecccc
Q 013391 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR 318 (444)
Q Consensus 239 ~~r~~~~~~~dl~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (444)
++||.|.+|.||.++++||+|+| + ++|+.+.......+.++.+++.+.|.+.++|++|+|++|+|+++++++|
T Consensus 240 Slrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyr 312 (407)
T KOG1376|consen 240 SLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 312 (407)
T ss_pred ccccCCcccccHHHHHhhCCCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhcc
Confidence 99999999999999999999999 2 8898887666678899999999999999999999999999999999999
Q ss_pred CcCChHHHHHHHHHhhccCCCccccccCCCccceeccCCCCCCCcccccccCChhHHHHHHHHHHHHHhhhccccccccc
Q 013391 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 398 (444)
Q Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflH~Y 398 (444)
|++.++++..++..+|++.++.|++-.-.+ . ...+..+++|+|+|+|+|++.+.+|..+|+.||.||||||||
T Consensus 313 gdvvP~~v~~A~a~ikt~rt~qfvd~~v~g-----g--~lakv~Ravcmlsnttai~eawarld~kfdLmyakrafVhwy 385 (407)
T KOG1376|consen 313 GDVVPKDVNAAIATIKTKRTIQFVDTVVPG-----G--DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 385 (407)
T ss_pred CCcCcccchHHHHhhhhccccccceeeccC-----c--chhhhceeeEecCCCcHHHHHHhhcchhhhhhhcchheeeec
Confidence 999999999999999999999987622111 0 112345789999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHH
Q 013391 399 TGEGMDEMEFTEAESNMNDLV 419 (444)
Q Consensus 399 ~~~Gmee~eF~ea~~~l~~l~ 419 (444)
.++||||+||.||++.|..+.
T Consensus 386 vgegmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 386 VGEGMEEGEFSEAREDLAALE 406 (407)
T ss_pred cCCCccccchhhhhhhHHhhc
Confidence 999999999999999998764
No 16
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=100.00 E-value=4.1e-68 Score=510.17 Aligned_cols=349 Identities=88% Similarity=1.381 Sum_probs=330.7
Q ss_pred hccccccccccCCCCCccceeeeeCCCCCccccccccCCCcccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHH
Q 013391 43 QLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRK 122 (444)
Q Consensus 43 ~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~ 122 (444)
+..+++++|.+...++|+||+|+||++|++++.+++++++.+|+|++ +++| .|+|..|.+..|.
T Consensus 7 q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds------- 70 (369)
T KOG1375|consen 7 QLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS------- 70 (369)
T ss_pred eeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc-------
Confidence 45788999999988999999999999999999999999999999998 4433 7889999888766
Q ss_pred HhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeee
Q 013391 123 EAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVL 202 (444)
Q Consensus 123 ~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~ 202 (444)
.||.+||||++||++||||||+|+.++..++++||.+.+.+++|.|++. ++++++|||+.|++..|.+++|.++++
T Consensus 71 ---~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~ci 146 (369)
T KOG1375|consen 71 ---SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFCI 146 (369)
T ss_pred ---ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCccccc
Confidence 8999999999999999999999999999999999999999999999966 999999999999999999999999999
Q ss_pred cChhhhhhhccccCCCCCCchhhhHHHHHHhccCccccCCCCCCcchhHhhcccccccCcccceeeccCccccccccccc
Q 013391 203 DNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYR 282 (444)
Q Consensus 203 dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~dl~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~ 282 (444)
||++|+++|.+.+++++++ ++|..+||||.+|.|++++..|++|+|++||+.+.++|++....++++
T Consensus 147 dNeal~dic~~~lkl~~~~-------------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~~ 213 (369)
T KOG1375|consen 147 DNEALYDICFRTLKLKTPS-------------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR 213 (369)
T ss_pred ccHHHHHHHhhhhcccCCC-------------CceeecccccccchhhhhhhhccCCCcchhhccccccccccccccccc
Confidence 9999999999999988877 889999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHhhccCcCCcccccCCCCCchhheeccccCcCChHHHHHHHHHhhccCCCccccccCCCccceeccCCCCCCC
Q 013391 283 ALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLK 362 (444)
Q Consensus 283 ~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~ 362 (444)
.++++++++++|+.++|+..++ ||+++.++|| +.++++..+..++.|.+..|++|+|++++...|..+|.+.+
T Consensus 214 a~tv~eltqq~fdaknmm~a~d-----yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~glk 286 (369)
T KOG1375|consen 214 ALTVPELTQQMFDAKNMMTACD-----YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGGLK 286 (369)
T ss_pred cccccccccccccCcchhhhhh-----hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCCcccc
Confidence 9999999999999999999887 9999999999 67889999999999999999999999999999999999999
Q ss_pred cccccccCChhHHHHHHHHHHHHHhhhccccccccccCCCCChhhHHHHHHHHHHHHHHHHHH-HhcCCC
Q 013391 363 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQY-QDATAD 431 (444)
Q Consensus 363 ~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~-~~~~~~ 431 (444)
.+.+.++|+|+|.+.|+++.++|..||+||||||||.++||+|+||+||..++++++.+|++| ++...+
T Consensus 287 ms~tf~~n~taiqelf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~~~~~~~ 356 (369)
T KOG1375|consen 287 MSSTFIGNNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQQDATAE 356 (369)
T ss_pred ccccccccchhHHHHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999 444433
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=7.2e-65 Score=507.65 Aligned_cols=327 Identities=49% Similarity=0.873 Sum_probs=303.4
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCccceeeeeCCCCCccccccccCCC
Q 013391 3 EILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFG 82 (444)
Q Consensus 3 Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~ 82 (444)
|||+||+||||||||++||+++ |+||+|+++++.++..+..
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~---------------------------------------v~idtd~~~l~~~~~~~~~ 41 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL---------------------------------------VLVDTEPGVIDETLSGPYR 41 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh---------------------------------------heecCCHHHHHHHhCcccc
Confidence 8999999999999999999843 9999999999999888777
Q ss_pred cccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCc
Q 013391 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (444)
Q Consensus 83 ~~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~ 162 (444)
.+|++.+.+.+++|+||||+.||+..|++..|+++|+||+++|+||++|||+++||+|||||||+|+.++|.|||+||++
T Consensus 42 ~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~ 121 (328)
T cd00286 42 LLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKR 121 (328)
T ss_pred cccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCcc
Confidence 78999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCccccCC
Q 013391 163 MMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRF 242 (444)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 242 (444)
.+++++|+|+...+ +++++||++|++++|.+++|+++++||++|.++|.+.+.+..++|+++|++||++|+++|.++||
T Consensus 122 ~~~~~~v~P~~~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 200 (328)
T cd00286 122 LKITFSILPGPDEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRF 200 (328)
T ss_pred ceeEEEecCCCCCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhcccccccccc
Confidence 99999999995433 68999999999999999999999999999999998888888899999999999999999999999
Q ss_pred CCCCcchhHhhcccccccCcccceeeccCcccccccccccccCHHHHHhhccCcCCcccccCCCCCchhheeccccCcCC
Q 013391 243 PGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMS 322 (444)
Q Consensus 243 ~~~~~~dl~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~ 322 (444)
||.++.|++++.++|+|+|++||++++++|+.+.....+...++.+++++++.+.++++.+++..++++++.+++||+..
T Consensus 201 ~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~~~ 280 (328)
T cd00286 201 DGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGPVS 280 (328)
T ss_pred CccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCCCC
Confidence 99999999999999999999999999999998755555677889999999999999998888888999999999999988
Q ss_pred hHHHHHHHHHhhccCCCccccccCCCccceeccCCCC-CCCcccccccCC
Q 013391 323 TKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK-GLKMASTFIGNS 371 (444)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~-~~~~s~~~l~N~ 371 (444)
..++.+.+..++.+.+.. +|+|++++++.|+.++. ....++++++|+
T Consensus 281 ~~~v~~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~~l~Ns 328 (328)
T cd00286 281 PSEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPASEHKVSALLLSNS 328 (328)
T ss_pred hHHHHHHHHHHHHhCCcC--CcCCCCEeEeecCCCCCCCcCeEEEEeccC
Confidence 889988888887765544 89999999999998876 677889999986
No 18
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=9.6e-50 Score=410.95 Aligned_cols=407 Identities=21% Similarity=0.256 Sum_probs=286.9
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCC----CCCccceeeeeCCCCCcccccc
Q 013391 2 REILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEAS----GGRYVPRAVLMDLEPGTMDSVR 77 (444)
Q Consensus 2 ~Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~----~~~~~pR~llvD~e~~~i~~~~ 77 (444)
|||||||+||++|+||+||||.|...+++.+++. ....+++++||++. ..+|+||+|++|++++.-...+
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~------~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~ 74 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSP------ASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPE 74 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCCc------cccCCCceeeeccccCCCceeEcCcEEEEecCCccccccc
Confidence 7999999999999999999999977765554432 12457899999864 5689999999999996432111
Q ss_pred cc----------------CCCcccCCCceeec-----cCCCCCCCCcCccc---cchhhHHHHHHHHHHHhhhcCCCCCc
Q 013391 78 SG----------------PFGQIFRPDNFVFG-----QSGAGNNWAKGHYT---EGAELIDSVLDVVRKEAENCDCLQGF 133 (444)
Q Consensus 78 ~~----------------~~~~~~~~~~~~~~-----~~g~gnnwa~G~~~---~g~~~~~~~~d~ir~~~E~cD~lqgf 133 (444)
.+ -.+-.|||+++..- ..+.+++|+.|+-. .+.+..|+++|+||+++|+||++|||
T Consensus 75 ~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGF 154 (493)
T cd06060 75 EGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGF 154 (493)
T ss_pred ccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccE
Confidence 11 11335899988654 23555666655422 35568899999999999999999999
Q ss_pred eeeecCCCCccccchHHHHHHHHhhcCCceeeEEEeecCCCC----CCccchhhHHHHHHHHHhhccCceeeecC-hhhh
Q 013391 134 QVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV----SDTVVEPYNATLSVHQLVENADECMVLDN-EALY 208 (444)
Q Consensus 134 ~~~~sl~GGTGSG~gs~lle~l~d~yp~~~i~~~~v~P~~~~----~~~~~~~yN~~lsl~~l~e~sd~~i~~dN-~~l~ 208 (444)
|+++|++||| ||+|+.++|.|+||||++.++++++.|.+.. .+.++++||++|++.+|.+++|+++|+.- ..+|
T Consensus 155 qi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w 233 (493)
T cd06060 155 QVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLW 233 (493)
T ss_pred EEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Confidence 9999999999 8999999999999999999999999996432 25789999999999999999999999974 3455
Q ss_pred hhhccc-----cCCCCCCchhhhHHHHHHhccCccccCCCCCCcchhHhhcccccccCcccceeeccC-ccccccccccc
Q 013391 209 DICFRT-----LKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFA-PLTSRGSQQYR 282 (444)
Q Consensus 209 ~~~~~~-----~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~dl~~l~~~L~P~p~~~fl~~s~~-P~~~~~~~~~~ 282 (444)
+..... +.+...+..+..+++|.+|.++|.++|..+.. .+|.++...|.+.- .|+...+.+ |+-. ..
T Consensus 234 ~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~g-Rki~~~~~a~P~p~-----~~ 306 (493)
T cd06060 234 RKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSG-RKVVAAGLALPFPM-----VG 306 (493)
T ss_pred cCCCCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhcc-chhhhhccCCCCCC-----CC
Confidence 443222 22333345567799999999999999998765 56889999888654 477765544 3322 12
Q ss_pred ccCHHHHHhhccC--cCCcccccCCCCCchhheeccccCcCCh----------------------HHHHHHHHHhhccCC
Q 013391 283 ALTVPELTQQMWD--AKNMMCAADPRHGRYLTASAMFRGKMST----------------------KEVDEQMINVQNKNS 338 (444)
Q Consensus 283 ~~t~~~l~~~~~~--~~~~~~~~~~~~~~~ls~~~~~RG~~~~----------------------~~~~~~~~~~~~~~~ 338 (444)
+-++.+++.+.-. +..++....+...+++++++++||.... .++...+.+-..+.+
T Consensus 307 ~~~l~d~L~~~~~~~~~~~l~p~~~~~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~~~s 386 (493)
T cd06060 307 GQDLIDFLDQSDGAVPWLQLTPGCQIGTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQYPGS 386 (493)
T ss_pred CCcHHHHHHhcCCCCCccccCCCCccCceeeeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhccCCc
Confidence 3456666665421 2233322123345789999999996411 111111111111110
Q ss_pred CccccccCCCccce------e-ccCCCC-----------C---CC--cccccccCChhHHHHHHHHHHHHHhhhcccccc
Q 013391 339 SYFVEWIPNNVKSS------V-CDIPPK-----------G---LK--MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFL 395 (444)
Q Consensus 339 ~~f~~w~p~~~~~~------~-~~~~~~-----------~---~~--~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAfl 395 (444)
.....-.+.|+++. . ..+... . ++ ..++.|+|++++.++|+.++.++.++-.+| +
T Consensus 387 ~~~~~~~~~p~~~~~PfP~if~~~v~~~G~~~~~~~~~~~~~~V~s~p~~a~l~ss~~l~~~l~~l~~~~~kl~~~r--~ 464 (493)
T cd06060 387 MSALSVLPLPLKIRVPFPYIFNPNISADGFVLDNSSRGSAGADVESIPVLAALQSSPSLGEMLESLHRQLSKLDLRR--K 464 (493)
T ss_pred chhheecCCCCCCCCCCchhhccccCCCccccCCCcccccccceeechhhhhhcCchHHHHHHHHHHHHHHhhhhHh--h
Confidence 00001111111111 0 000000 0 11 134779999999999999999999999999 9
Q ss_pred ccccCCCCChhhHHHHHHHHHHHHHHHHH
Q 013391 396 HWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424 (444)
Q Consensus 396 H~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~ 424 (444)
|.|...|+|+|||+|+++.|.+++++|++
T Consensus 465 ~~~~~~g~e~de~~e~le~L~~~~~~Y~~ 493 (493)
T cd06060 465 ASFFESGLEEDEYKELLEQLLDLAECYED 493 (493)
T ss_pred hcccccccCHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999963
No 19
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=1.2e-51 Score=388.46 Aligned_cols=215 Identities=49% Similarity=0.953 Sum_probs=200.8
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCccceeeeeCCCCCccccccccCCC
Q 013391 3 EILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFG 82 (444)
Q Consensus 3 Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~ 82 (444)
|||+||+||||||||.+||+++++||+++++. .......+.++||+|...++|+||+|+||+|++++++++.++.+
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~----~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~ 76 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDS----KSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKR 76 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTS----SSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEET
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhcccccc----ccccccccccceeeeccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999998872 22234567789999999999999999999999999999888777
Q ss_pred cccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCc
Q 013391 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (444)
Q Consensus 83 ~~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~ 162 (444)
.+|++++++.+++|+|+||+.||+..|++..++++|+||+++|+||.+++|+++||+|||||||+++.|++.||++||++
T Consensus 77 ~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~ 156 (216)
T PF00091_consen 77 SLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKK 156 (216)
T ss_dssp TESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTS
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccccc
Confidence 89999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCch
Q 013391 163 MMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFG 223 (444)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~ 223 (444)
.+++++|+|+ .. +.++++||++++|++|.+++|++|++||++|.++|.+.+++++|+|+
T Consensus 157 ~~~~~~ilP~-~~-e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~ 215 (216)
T PF00091_consen 157 PIISFSILPF-SS-EGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFN 215 (216)
T ss_dssp EEEEEEEE-C-GG-GSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHH
T ss_pred ceeecccccc-cc-ccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcC
Confidence 9999999999 44 89999999999999999999999999999999999999998888875
No 20
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=4.5e-37 Score=284.19 Aligned_cols=185 Identities=40% Similarity=0.705 Sum_probs=171.1
Q ss_pred cccccCCCCCccceeeeeCCCCCccccccccCCCcccCCCceeeccCCCCCCCCcCccc-----cchhhHHHHHHHHHHH
Q 013391 49 VYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT-----EGAELIDSVLDVVRKE 123 (444)
Q Consensus 49 ~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~~~~~~~~~~~~~g~gnnwa~G~~~-----~g~~~~~~~~d~ir~~ 123 (444)
++|.+ |++.||+|++|+++++++.+..++.+..|++.+.+..+.++||||++||+. .|+++.++++|+||++
T Consensus 3 ~~~g~---g~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~ 79 (192)
T smart00864 3 KVFGV---GGYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREE 79 (192)
T ss_pred EEEEe---CCchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 35554 378899999999999999988777777899988888999999999999997 8999999999999999
Q ss_pred hhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeec
Q 013391 124 AENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD 203 (444)
Q Consensus 124 ~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~d 203 (444)
+|+| ++|+++||+|||||||+++.+++.++ +||+.. ++++|+|+ ..|.++++||++++|++|.+++|.++++|
T Consensus 80 le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~d 152 (192)
T smart00864 80 LEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVID 152 (192)
T ss_pred hcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 9999 89999999999999999999999999 999877 99999994 57889999999999999999999999999
Q ss_pred ChhhhhhhccccCCCCCCchhhhHHHHHHhccCccccCCCC
Q 013391 204 NEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPG 244 (444)
Q Consensus 204 N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~ 244 (444)
|++|.++|.+.+.+ .++|+.+|++|++.|+++|.++||||
T Consensus 153 N~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 153 NDALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred hHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999877766 78999999999999999999999986
No 21
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=1.9e-32 Score=274.31 Aligned_cols=226 Identities=23% Similarity=0.304 Sum_probs=189.3
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCccceeeeeCCCCCccccccccC
Q 013391 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (444)
Q Consensus 1 M~Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 80 (444)
|+ |..|.+|+||+.|-+++++.- . ..+.+|+||+|+||+++..++.++.
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~~-----~-----------------------~~~~~~~~~~iavntD~~~L~~l~~-- 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRHD-----K-----------------------RSGFGYCVGALAINTAKNDLKGLKH-- 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHhC-----C-----------------------CcCCccceeEEEEECCHHHHHhhhc--
Confidence 77 899999999999999987611 0 0123678999999999999887754
Q ss_pred CCcccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCC--CCCceeeecCCCCccccchHHHHHHHHhh
Q 013391 81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDC--LQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (444)
Q Consensus 81 ~~~~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~--lqgf~~~~sl~GGTGSG~gs~lle~l~d~ 158 (444)
...++.++.+++.+....+.|.+..|++..++.+|.||+++|.||. +|+|++++|+|||||||+++.+++.++++
T Consensus 50 ---~~~~~ki~~g~~~t~G~GaG~~~~~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~ 126 (349)
T cd02202 50 ---IPAEDRILIGQSEVKGHGVGADRELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKER 126 (349)
T ss_pred ---CCCCCEEEecCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHHHh
Confidence 2356777777653333333333456889999999999999999997 99999999999999999999999999999
Q ss_pred cCCceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCcc
Q 013391 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTC 238 (444)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (444)
|| +.+++++++|+. .+..+++||+++++++|.+++|.+|++||++|.+++.. + .+.|+.+|++|++.|+.++.
T Consensus 127 ~~-~~~~~iv~~P~~--~eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~---~-~~~f~~~N~~Ia~~i~~l~~ 199 (349)
T cd02202 127 YE-EPVYALGVLPAR--EEGERYSANAARSLDALSEEADAIILFDNDAWKRKGES---V-EEAYDRINEEIARRIGLLLR 199 (349)
T ss_pred CC-ccEEEEEEecCC--CCCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc---h-HHHHHHHHHHHHHHHHHHHH
Confidence 99 889999999984 35589999999999999999999999999999998742 2 47899999999999999999
Q ss_pred ccCC-----CCCCcchhHhhcccccccCcccceeecc
Q 013391 239 CLRF-----PGQLNSDLRKLAVNLIPFPRLHFFMVGF 270 (444)
Q Consensus 239 ~~r~-----~~~~~~dl~~l~~~L~P~p~~~fl~~s~ 270 (444)
++|| ||.+|.|++++.++|.+. .+....+
T Consensus 200 ~~r~~~~~~~g~invD~~dv~~~L~~~---G~~~iG~ 233 (349)
T cd02202 200 AGEANAGDSVGESVLDASEVINTLSGG---GFATIGY 233 (349)
T ss_pred hhhcccCCCCCeEeccHHHHHHHhccC---CeEEEEE
Confidence 9999 999999999999999764 4444443
No 22
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=99.97 E-value=4.9e-32 Score=266.07 Aligned_cols=240 Identities=24% Similarity=0.365 Sum_probs=174.7
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccC----CCCCccceeeeeCCCCCcccc-
Q 013391 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEA----SGGRYVPRAVLMDLEPGTMDS- 75 (444)
Q Consensus 1 M~Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~----~~~~~~pR~llvD~e~~~i~~- 75 (444)
||||+|||+|+.+|++|+||||+|..-.++.++....... ....||+|+.+ +.-+|+||+|++|+++..-..
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~~~---~~~ndvlyr~g~~~~~~~tytPRl~l~Dl~g~~g~~~ 77 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPPGE---LCPNDVLYRTGRTDHGQITYTPRLLLVDLKGELGTLK 77 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCChhh---cCcchhhhhccccccCceeeccceeEEecCccccccc
Confidence 9999999999999999999999998888877765433221 11228999976 334899999999998842110
Q ss_pred -----------------------ccccC-------------------------------------------CCcccCCCc
Q 013391 76 -----------------------VRSGP-------------------------------------------FGQIFRPDN 89 (444)
Q Consensus 76 -----------------------~~~~~-------------------------------------------~~~~~~~~~ 89 (444)
++..+ .+..|||+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yHp~t 157 (483)
T KOG2530|consen 78 YQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYHPRT 157 (483)
T ss_pred cchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcCccc
Confidence 00000 012345544
Q ss_pred eeec-----cCCCCCCCCcCccccc-hhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCce
Q 013391 90 FVFG-----QSGAGNNWAKGHYTEG-AELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM 163 (444)
Q Consensus 90 ~~~~-----~~g~gnnwa~G~~~~g-~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~~ 163 (444)
+.-- ..++-++|.-|+-..- ..+.+++.|+||+++|+||.||||+++.++.+|+| |+++.++|.|+|||+++.
T Consensus 158 l~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~~~ 236 (483)
T KOG2530|consen 158 LNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSKKA 236 (483)
T ss_pred cccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhcCCc
Confidence 3221 1233355666654322 23678899999999999999999999999999976 999999999999999999
Q ss_pred eeEEEeecCCC-CCCccch------hhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccC
Q 013391 164 MLTFSVFPSPK-VSDTVVE------PYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGV 236 (444)
Q Consensus 164 i~~~~v~P~~~-~~~~~~~------~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~ 236 (444)
+++++..|.+. .++.... ..|.++++++|.++|++++|+.--.. +. .......++|.++.++
T Consensus 237 v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~~-------~~----~~~~tsA~~a~~~ds~ 305 (483)
T KOG2530|consen 237 VFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTASG-------LG----DLWETSAKLARAFDSI 305 (483)
T ss_pred eeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeeccccccc-------cc----cHHHHHHHHHhhcccc
Confidence 99999998543 2332222 56899999999999999999852221 11 2346678999999999
Q ss_pred ccccCCCCCCcchhHhhcc
Q 013391 237 TCCLRFPGQLNSDLRKLAV 255 (444)
Q Consensus 237 t~~~r~~~~~~~dl~~l~~ 255 (444)
|.|.|.-+..+.-+.++.+
T Consensus 306 tlptr~~ssS~~~~~d~ls 324 (483)
T KOG2530|consen 306 TLPTRLISSSNLRQRDTLS 324 (483)
T ss_pred cccceecchhHHHHHHHHH
Confidence 9999998876655555444
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.95 E-value=6.1e-28 Score=237.36 Aligned_cols=206 Identities=23% Similarity=0.310 Sum_probs=168.8
Q ss_pred CeeEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCccceeeeeCCCCCccccccccC
Q 013391 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (444)
Q Consensus 1 M~Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 80 (444)
|+ |..|.+|+||+.+-+++++. ++ . -.+.+.||++...++.+...
T Consensus 1 ~~-i~viGvGg~G~n~v~~~~~~-----~~-------------------------~---~~~~iainTd~~~L~~~~a~- 45 (303)
T cd02191 1 AK-IAVIGFGGAGGNIVDKFLEY-----DK-------------------------E---GRSAVAVNTDAQDLLGLEAE- 45 (303)
T ss_pred CE-EEEEEECchHHHHHHHHHHc-----CC-------------------------C---CccEEEEECcHHHHhcCCCC-
Confidence 44 88899999999999998751 00 0 14688999988777655421
Q ss_pred CCcccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcC
Q 013391 81 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (444)
Q Consensus 81 ~~~~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp 160 (444)
.+-++.++ .+.-.|+|+||.. |++..++++|+||+.+|.||. |++++++|||||||+++.+++.+++.|+
T Consensus 46 ~ki~iG~~--~t~g~GaG~~~~~-----G~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~ 115 (303)
T cd02191 46 NRVLIGQA--RTKGLGAGANPEL-----GAEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT 115 (303)
T ss_pred cEEecCCc--cccCCCCCCCHHH-----HHHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC
Confidence 11111111 1234589999865 568899999999999999994 8999999999999999999999999985
Q ss_pred CceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCcccc
Q 013391 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCL 240 (444)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (444)
++++|+|.|...|..+++||+++++++|.+++|.+|++||++|.+++.+ +.+ ...|+.+|++|++.+++++.++
T Consensus 116 ----~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~-~~af~~~N~~ia~~i~~it~~i 189 (303)
T cd02191 116 ----LTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASL-EGAFDHADEVLVRAVGGLFGAI 189 (303)
T ss_pred ----CEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CCh-HHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555678899999999999999999999999999999999976 766 4699999999999999999999
Q ss_pred CCCCCCcchhHhhcccc
Q 013391 241 RFPGQLNSDLRKLAVNL 257 (444)
Q Consensus 241 r~~~~~~~dl~~l~~~L 257 (444)
|+||.+|.|++++.+.|
T Consensus 190 ~~~g~invD~~dv~~~l 206 (303)
T cd02191 190 EIEGEINVDFADVKNVM 206 (303)
T ss_pred ccCCcccCCHHHHHHHh
Confidence 99999999999998876
No 24
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.93 E-value=6e-26 Score=226.63 Aligned_cols=214 Identities=18% Similarity=0.285 Sum_probs=165.3
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCccceeeeeCCCCCccccccccCCCc
Q 013391 4 ILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQ 83 (444)
Q Consensus 4 iitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~ 83 (444)
|..|.+|+||+.+-+++++. ++ .-...+.+|++...++.+... .+-
T Consensus 20 i~viGvGg~G~n~v~~l~~~-----~~----------------------------~~~~~iainTD~~~L~~~~a~-~ki 65 (349)
T TIGR00065 20 IKVIGVGGGGNNTVNRMLEE-----GV----------------------------EGVEFIAINTDAQHLKTTKAD-KKI 65 (349)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC----------------------------CceEEEEEECCHHHHhcCCCC-eEE
Confidence 78899999999999998762 00 015678889887666544321 111
Q ss_pred ccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCce
Q 013391 84 IFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM 163 (444)
Q Consensus 84 ~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~~ 163 (444)
++.++ .+.-.|+|++|+ .|++..++.+|.||+.+|.||.+ ++++|+|||||||+++.+++.+++ |+ +.
T Consensus 66 ~iG~~--~t~G~GaG~~~~-----~G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ake-~~-~l 133 (349)
T TIGR00065 66 LIGKK--LTRGLGAGGNPE-----IGRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAKE-LG-AL 133 (349)
T ss_pred EcCCC--CCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHHH-cC-CC
Confidence 11111 122247888877 46889999999999999999986 999999999999999966666554 64 44
Q ss_pred eeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCccccCCC
Q 013391 164 MLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFP 243 (444)
Q Consensus 164 i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~ 243 (444)
++++.++|+ ..|..+++||++++|++|.+++|++|++||++|+++|.+ +.+ ...|+.+|++|++.+.++|.++|+|
T Consensus 134 ~vaivt~Pf--~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i-~~af~~~N~iia~~i~~it~~ir~~ 209 (349)
T TIGR00065 134 TVAVVTKPF--KFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPL-NDAFKVADDVLVRAVKGISELITKP 209 (349)
T ss_pred EEEEEeCCc--cccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCH-HHHHHHHHHHHHHHHHhHHHhhccC
Confidence 444444554 578899999999999999999999999999999999977 776 4599999999999999999999999
Q ss_pred CCCcchhHhhcccccccCcccceee
Q 013391 244 GQLNSDLRKLAVNLIPFPRLHFFMV 268 (444)
Q Consensus 244 ~~~~~dl~~l~~~L~P~p~~~fl~~ 268 (444)
|.+|.|+.++.+-|-- +..-++..
T Consensus 210 g~iNvDf~dv~~vl~~-~G~a~iG~ 233 (349)
T TIGR00065 210 GLINIDFADVRAVMSG-GGVAMMGI 233 (349)
T ss_pred CcCcCCHHHHHHHHhc-CCeEEEEE
Confidence 9999999999986633 33334433
No 25
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.92 E-value=2.7e-25 Score=219.54 Aligned_cols=207 Identities=17% Similarity=0.284 Sum_probs=164.9
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCccceeeeeCCCCCccccccccCCCc
Q 013391 4 ILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQ 83 (444)
Q Consensus 4 iitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~ 83 (444)
|..|.+|+||+.+-+++++. ++ . -...+.+|++...++.+.. +.+-
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~-------------------------~---~~~~~a~ntD~~~L~~~~~-~~k~ 48 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GL-------------------------E---GVEFIAANTDAQALAKSKA-PNKI 48 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC-------------------------C---CceEEEEECCHHHHhcCCC-CcEE
Confidence 77899999999999998761 00 0 1457889988876665432 1111
Q ss_pred ccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCce
Q 013391 84 IFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM 163 (444)
Q Consensus 84 ~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~~ 163 (444)
++.++ .+.-.|+|++|+.| ++..++.+|.||+.+|.||.+ ++++|+|||||||+++.+++..+ +|+ +.
T Consensus 49 ~ig~~--~t~g~Gag~~~~~g-----~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~-e~g-~~ 116 (304)
T cd02201 49 QLGKE--LTRGLGAGGDPEVG-----RKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAK-EMG-AL 116 (304)
T ss_pred EcCCC--CCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHH-HcC-CC
Confidence 12111 12335888888754 578899999999999999986 99999999999999998776665 465 34
Q ss_pred eeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCccccCCC
Q 013391 164 MLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFP 243 (444)
Q Consensus 164 i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~ 243 (444)
++++.++|+ ..|..+++||++++++.|.+++|.++++||++|.++|.+.+.+.. .|+.+|++|++++.++|.++|+|
T Consensus 117 ~~~vvt~Pf--~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~~~ 193 (304)
T cd02201 117 TVAVVTKPF--SFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLITKP 193 (304)
T ss_pred EEEEEeCCc--cccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhccC
Confidence 555555555 567789999999999999999999999999999999987777754 89999999999999999999999
Q ss_pred CCCcchhHhhcccccc
Q 013391 244 GQLNSDLRKLAVNLIP 259 (444)
Q Consensus 244 ~~~~~dl~~l~~~L~P 259 (444)
|.+|.|+.++.+.|-.
T Consensus 194 g~invD~~dv~~vl~~ 209 (304)
T cd02201 194 GLINLDFADVKTVMKN 209 (304)
T ss_pred ccccCCHHHHHHHhcc
Confidence 9999999999988754
No 26
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.91 E-value=2.2e-24 Score=216.13 Aligned_cols=205 Identities=21% Similarity=0.361 Sum_probs=164.3
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCccceeeeeCCCCCccccccccCCCc
Q 013391 4 ILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQ 83 (444)
Q Consensus 4 iitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~ 83 (444)
|..|.+|+||+.+-+++++. ++ .+ ...+.|+++...+..+... .+-
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~-------------------------~~---v~~iaiNTD~q~L~~~~a~-~ki 76 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GI-------------------------EG---AETIAINTDAQHLAMIKAD-KKI 76 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC-------------------------CC---ceEEEEECCHHHHhcCCCC-cEE
Confidence 78899999999999998751 10 00 4568889888666544321 111
Q ss_pred ccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCce
Q 013391 84 IFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM 163 (444)
Q Consensus 84 ~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~~ 163 (444)
++.++ ++.-.|+|++|. .|++..++.+|.||+.+|.||. |++++|||||||||+++.+++.+++ ++ ..
T Consensus 77 ~iG~~--~t~G~GaG~dp~-----~G~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g-~l 144 (378)
T PRK13018 77 LIGKS--LTRGLGAGGDPE-----VGRKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG-AL 144 (378)
T ss_pred ecCCc--cCCCCCCCCChH-----HHHHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC-CC
Confidence 11111 122347777766 4567788999999999999997 7999999999999999999999987 44 45
Q ss_pred eeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCccccCCC
Q 013391 164 MLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFP 243 (444)
Q Consensus 164 i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~ 243 (444)
.+++++.|+ ..|...+..|+.++|++|.+++|++|++||++|.++| +.+.+. ..|+.+|++|++++.++|.++|+|
T Consensus 145 tv~vVt~Pf--~~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~-~af~~~N~iIa~~I~~It~~i~~~ 220 (378)
T PRK13018 145 VVGVVTKPF--KFEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIA-DAFSVADEVIAETVKGITETITKP 220 (378)
T ss_pred eEEEEEcCc--ccccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHH-HHHHHHHHHHHHHHHhhhhhcccC
Confidence 667788887 3567789999999999999999999999999999999 666664 589999999999999999999999
Q ss_pred CCCcchhHhhccccc
Q 013391 244 GQLNSDLRKLAVNLI 258 (444)
Q Consensus 244 ~~~~~dl~~l~~~L~ 258 (444)
|.+|.|++++.+-|-
T Consensus 221 G~iN~Df~dv~~vl~ 235 (378)
T PRK13018 221 SLINLDFADVKSVMK 235 (378)
T ss_pred CceecCHHHHHHHhc
Confidence 999999999988663
No 27
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.89 E-value=2.1e-23 Score=179.86 Aligned_cols=123 Identities=42% Similarity=0.864 Sum_probs=111.6
Q ss_pred CcccceeeccCcccccccccccccCHHHHHhhccCcCCcccccCCCCCchhheeccccCcCChHHHHHHHHHhhccCCCc
Q 013391 261 PRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSY 340 (444)
Q Consensus 261 p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~ 340 (444)
|++||+.++++|+.......+++.++.+|++++|+++++|++++|.+|+|+++++++||++.++++.+.+.+++.+..+.
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 89999999999999987778899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccceeccCCCCCCCcc---cccccCChhHHHHHHHHHH
Q 013391 341 FVEWIPNNVKSSVCDIPPKGLKMA---STFIGNSTSIQEMFRRVSE 383 (444)
Q Consensus 341 f~~w~p~~~~~~~~~~~~~~~~~s---~~~l~N~t~i~~~l~~l~~ 383 (444)
|++|+|+++++++|.++|.....+ +++|+|+|+|.+.|+++.+
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s~~s~~~LsNsTaI~~~f~~i~~ 126 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNSDRSGLMLSNSTAIAEVFSRISH 126 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTSSEEEEEEEEEGGGHHHHHHHHH
T ss_pred eeeecCchhhcccccCCCcccCCCcceEEEeCChHHHHHHHHHhcC
Confidence 999999999999999998776666 9999999999999999874
No 28
>PRK09330 cell division protein FtsZ; Validated
Probab=99.88 E-value=9.4e-23 Score=204.61 Aligned_cols=207 Identities=20% Similarity=0.317 Sum_probs=163.7
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccCCCCCccceeeeeCCCCCccccccccCCC
Q 013391 3 EILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFG 82 (444)
Q Consensus 3 Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~ 82 (444)
.|..|.+|+||+.+-+++++. ++ .+ ...+.++++...+..+... .+
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~-----~~-------------------------~~---v~fia~NTD~q~L~~~~a~-~k 60 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEE-----GI-------------------------QG---VEFIAANTDAQALLKSKAP-VK 60 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHc-----CC-------------------------CC---ceEEEEeCcHHHHhcCCCC-eE
Confidence 377899999999999998751 10 00 2467888877665543321 11
Q ss_pred cccCCCceeeccCCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCc
Q 013391 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (444)
Q Consensus 83 ~~~~~~~~~~~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~ 162 (444)
-++.++ .+.-.|+|++|. .|++..++.+|.||+.+|.||.+ +++++||||||||.++ ++..++.+|+
T Consensus 61 i~lG~~--~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaap-vIA~iake~g-- 127 (384)
T PRK09330 61 IQLGEK--LTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAP-VVAEIAKELG-- 127 (384)
T ss_pred EEcCCc--ccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHH-HHHHHHHHcC--
Confidence 111111 122247787766 67889999999999999999888 9999999999999999 5555666675
Q ss_pred eeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCccccCC
Q 013391 163 MMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRF 242 (444)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 242 (444)
+++++|+|.|...|..+++||+.++|+.|.+++|.+|+++|++|.+++.+.+.+. ..|+.+|.+|++.+.+++..+++
T Consensus 128 -~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~-~Af~~ad~vL~~~v~~It~~i~~ 205 (384)
T PRK09330 128 -ILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLL-DAFKAADDVLRQAVQGITDLITK 205 (384)
T ss_pred -CcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667777666678999999999999999999999999999999999997766663 48999999999999999999999
Q ss_pred CCCCcchhHhhccccc
Q 013391 243 PGQLNSDLRKLAVNLI 258 (444)
Q Consensus 243 ~~~~~~dl~~l~~~L~ 258 (444)
||.+|.|+.++.+-|-
T Consensus 206 pG~iNvDfaDvk~vm~ 221 (384)
T PRK09330 206 PGLINLDFADVKTVMS 221 (384)
T ss_pred CCcccCCHHHHHHHHh
Confidence 9999999999988664
No 29
>PF14881 Tubulin_3: Tubulin domain
Probab=99.84 E-value=1.3e-20 Score=171.30 Aligned_cols=149 Identities=21% Similarity=0.332 Sum_probs=109.6
Q ss_pred CcccCCCceeeccC-------CCCCCCCcCccccch-hhHHHHHHH-HHHHhhhcCCCCCceeeecCCCCccccchHHHH
Q 013391 82 GQIFRPDNFVFGQS-------GAGNNWAKGHYTEGA-ELIDSVLDV-VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLI 152 (444)
Q Consensus 82 ~~~~~~~~~~~~~~-------g~gnnwa~G~~~~g~-~~~~~~~d~-ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~ll 152 (444)
+-.|||+++..-++ ....+|..|.-.... +..++++|+ ||+++|+||++||||++.++.+|+| |+++.++
T Consensus 17 r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~L 95 (180)
T PF14881_consen 17 RVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLL 95 (180)
T ss_pred cceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHH
Confidence 33566666554332 123456666533322 334566665 9999999999999999999999987 9999999
Q ss_pred HHHHhhcCCcee-eEEEeecCCCCCC-----ccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhh
Q 013391 153 SKIREEYPDRMM-LTFSVFPSPKVSD-----TVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLN 226 (444)
Q Consensus 153 e~l~d~yp~~~i-~~~~v~P~~~~~~-----~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N 226 (444)
|+|||||||+.+ +.+++.+...... ...+..|.++++.+|.++|++++|+.... ...+..+..
T Consensus 96 e~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~-----------d~~s~~htS 164 (180)
T PF14881_consen 96 EHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS-----------DASSNWHTS 164 (180)
T ss_pred HHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC-----------cCCCcHHHH
Confidence 999999999996 5555554322111 12456899999999999999999997311 124455889
Q ss_pred HHHHHHhccCccccCC
Q 013391 227 HLISATMSGVTCCLRF 242 (444)
Q Consensus 227 ~~ia~~i~~~t~~~r~ 242 (444)
.++|.+|.++|.|+|.
T Consensus 165 ai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 165 AILAAAIDTITLPYRL 180 (180)
T ss_pred HHHHHHHHhccccCCC
Confidence 9999999999999884
No 30
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.53 E-value=6e-14 Score=138.36 Aligned_cols=147 Identities=18% Similarity=0.293 Sum_probs=127.7
Q ss_pred CccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEeecCCCCCCccchhh
Q 013391 104 GHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPY 183 (444)
Q Consensus 104 G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~y 183 (444)
+.+..|++..++..+.|++.++..| -++++.++|||||+|.++.+++.+++ .+...++++++|+ ..|...+.-
T Consensus 73 a~P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf--~~EG~~r~~ 145 (338)
T COG0206 73 ANPEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPF--SFEGSPRME 145 (338)
T ss_pred CCcHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecc--hhcCchHHH
Confidence 3478899999999999999998877 45889999999999999999999988 4778888899998 356667888
Q ss_pred HHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCccccCCCCCCcchhHhhcccccc
Q 013391 184 NATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIP 259 (444)
Q Consensus 184 N~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~dl~~l~~~L~P 259 (444)
|+..++..|.+++|.+|+++|+.|.+... ...+ ...|+..|.++++.+.+++..+.-||.+|.|+.++.+-+-.
T Consensus 146 ~A~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~-~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~~ 219 (338)
T COG0206 146 NAEEGIEELREVVDTLIVIPNDKLLKGKD-KTPI-AEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMKG 219 (338)
T ss_pred HHHHHHHHHHHhCCcEEEEecHHHHhccC-cccH-HHHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHHHHhc
Confidence 99999999999999999999999988764 3332 35688889999999999999999999999999999987765
No 31
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.50 E-value=1.4e-14 Score=122.47 Aligned_cols=65 Identities=29% Similarity=0.492 Sum_probs=49.8
Q ss_pred eeEEEEecCchhhHHHHHHHHHHHHHhCCCCCCCCCCCcchhccccccccccC----CCCCccceeeeeCCCCCc
Q 013391 2 REILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEA----SGGRYVPRAVLMDLEPGT 72 (444)
Q Consensus 2 ~Eiitiq~Gq~gNqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~----~~~~~~pR~llvD~e~~~ 72 (444)
|||||||+|+.+|+||+||||.| |..+..+... .....+++++||++ +..+|+||+|++|++.+.
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Q--e~~~~y~~~~----~~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~l 69 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQ--ESYLPYDPDE----KPSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGL 69 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhh--hcccccCccc----cCcccCCceEEecccCcCCCeeECCcEEEEecCCCc
Confidence 79999999999999999999987 5444322211 11235789999986 345899999999999873
No 32
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.39 E-value=1.3e-07 Score=79.97 Aligned_cols=114 Identities=26% Similarity=0.442 Sum_probs=84.9
Q ss_pred CcchhHhhcccccccCcccceeeccCcccccccccccccCHHHHHh--hccCcCCcccccCCCCCchhheeccccCcCCh
Q 013391 246 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQ--QMWDAKNMMCAADPRHGRYLTASAMFRGKMST 323 (444)
Q Consensus 246 ~~~dl~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~--~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~ 323 (444)
+|.|++++.++|+|+| |+.++++|.... .+..+..++.. .++++++++..+++.. ++++.. +...
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 4789999999999999 999999998752 34455666666 7788877776665443 565554 6677
Q ss_pred HHHHHHHHHhhccCC-CccccccC-CCccceeccCCCCCCCcccccccC-ChhHHHHHHHHH
Q 013391 324 KEVDEQMINVQNKNS-SYFVEWIP-NNVKSSVCDIPPKGLKMASTFIGN-STSIQEMFRRVS 382 (444)
Q Consensus 324 ~~~~~~~~~~~~~~~-~~f~~w~p-~~~~~~~~~~~~~~~~~s~~~l~N-~t~i~~~l~~l~ 382 (444)
.++.+.+..++.+.. ..|+.|+| ..+++. .+.+.++| +|+|...|+++.
T Consensus 68 ~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~~----------~~~~~i~ni~t~i~~~~~~~~ 119 (120)
T smart00865 68 KEVNEAMERIREKADPDAFIIWGPVIDEELG----------GDEIRVTVIATGIGSAFKRLS 119 (120)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccccCCcCC----------CCcEEEEEEecccCccccccC
Confidence 888888888877655 78899998 443321 35678999 999999887753
No 33
>PF13809 Tubulin_2: Tubulin like
Probab=97.59 E-value=0.0013 Score=66.48 Aligned_cols=102 Identities=23% Similarity=0.161 Sum_probs=61.7
Q ss_pred ccCCCCCCCCcCccccchhhHHHHHHHHHHHhh---------hc-CCCCCceeeecCCCCccccchHHHHHHHHhhc---
Q 013391 93 GQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE---------NC-DCLQGFQVCHSLGGGTGSGMGTLLISKIREEY--- 159 (444)
Q Consensus 93 ~~~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E---------~c-D~lqgf~~~~sl~GGTGSG~gs~lle~l~d~y--- 159 (444)
...|+|..-+.|.... ....+++.+.|++.+. .. +.-=-++|+.|++||||||+--.++-.||+.+
T Consensus 101 ~~~GAgq~R~~GRla~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~ 179 (345)
T PF13809_consen 101 LSAGAGQIRALGRLAF-FSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGTGSGMFLDIAYLLRDILKQP 179 (345)
T ss_pred hhcCCCCcccchHHHH-HHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCccchhHHHHHHHHHHHHhhcc
Confidence 3457777766665332 1222344444444444 11 00012578889999999999999999999976
Q ss_pred --CCceeeEEEeecCCCCCC---ccchhhHHHHHHHHHhhc
Q 013391 160 --PDRMMLTFSVFPSPKVSD---TVVEPYNATLSVHQLVEN 195 (444)
Q Consensus 160 --p~~~i~~~~v~P~~~~~~---~~~~~yN~~lsl~~l~e~ 195 (444)
....+..+.++|...... .....-|+-=+|.+|.-.
T Consensus 180 ~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~~~ 220 (345)
T PF13809_consen 180 GQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELDYL 220 (345)
T ss_pred cCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHHHH
Confidence 455688889999732111 133445776666666443
No 34
>PLN02847 triacylglycerol lipase
Probab=76.91 E-value=3.9 Score=43.92 Aligned_cols=115 Identities=20% Similarity=0.255 Sum_probs=66.0
Q ss_pred ccccccCCCCCcccee-eeeCCCCCccccccccCCC--c----------ccCCCceeeccCCCC----CCCCcCccccch
Q 013391 48 NVYYNEASGGRYVPRA-VLMDLEPGTMDSVRSGPFG--Q----------IFRPDNFVFGQSGAG----NNWAKGHYTEGA 110 (444)
Q Consensus 48 ~~~F~e~~~~~~~pR~-llvD~e~~~i~~~~~~~~~--~----------~~~~~~~~~~~~g~g----nnwa~G~~~~g~ 110 (444)
|+++....++.|.|.- |++|-+.+.|--...|... + .|++.. ....|.. ..-.+|++...+
T Consensus 154 DVL~~~~ks~i~kPaffVavDh~~K~IVVsIRGT~Si~D~LTDL~~~~vPf~~s~--l~~gG~~n~~~G~AH~Gml~AAr 231 (633)
T PLN02847 154 DVLIQKPKAGILKPAFTIIRDENSKCFLLLIRGTHSIKDTLTAATGAVVPFHHSV--LHDGGVSNLVLGYAHCGMVAAAR 231 (633)
T ss_pred HEEEeecccccCCCCeEEEEeCCCCEEEEEECCCCCHHHHHHhcccccccCCccc--ccccCcccCcCCccCccHHHHHH
Confidence 5555555667777665 7788777654422222211 1 111111 1111111 112445555455
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHh--hcCCceeeEEE
Q 013391 111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE--EYPDRMMLTFS 168 (444)
Q Consensus 111 ~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d--~yp~~~i~~~~ 168 (444)
.+.+.+...|++.++++...+-+++-|||||| +++.+.-.|++ .|++...++|+
T Consensus 232 wI~~~i~~~L~kal~~~PdYkLVITGHSLGGG----VAALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 232 WIAKLSTPCLLKALDEYPDFKIKIVGHSLGGG----TAALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred HHHHHHHHHHHHHHHHCCCCeEEEeccChHHH----HHHHHHHHHhcCCCCCCceEEEec
Confidence 66777778888999999888888889999877 55555556665 45655555554
No 35
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=64.61 E-value=9.7 Score=33.17 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=38.9
Q ss_pred CccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceee
Q 013391 104 GHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMML 165 (444)
Q Consensus 104 G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~~i~ 165 (444)
|++.....+...+...+++...++..-+-+++=||+||+ ++..+...++...+.+.+-
T Consensus 2 Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~----lA~l~a~~~~~~~~~~~~~ 59 (153)
T cd00741 2 GFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGA----LAGLAGLDLRGRGLGRLVR 59 (153)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHH----HHHHHHHHHHhccCCCceE
Confidence 555555666777777777777666777778888899865 6666666676654333333
No 36
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=64.31 E-value=6.3 Score=33.70 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhhcCCCCCceeeecCCCCcc
Q 013391 113 IDSVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144 (444)
Q Consensus 113 ~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTG 144 (444)
.+...++|+..+++++. +|++++.++ |||-
T Consensus 41 ~gt~~~~i~~ai~~~~~-dGVlVltDL-Gssp 70 (124)
T PRK14484 41 IGTSFDQIQEAIEKNES-DGVLIFFDL-GSAE 70 (124)
T ss_pred ccchHHHHHHHHHhcCc-CCeEEEEeC-CChH
Confidence 34556888889999999 999999999 7743
No 37
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=62.97 E-value=9.3 Score=31.85 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHhhhcCCCCCceeeecCCCCcc
Q 013391 112 LIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144 (444)
Q Consensus 112 ~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTG 144 (444)
-.+++.+++++.+++.+.-+|++++.++.|||-
T Consensus 39 ~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 39 SIEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp CHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred CHHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 456777888888888888899999999998854
No 38
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=62.09 E-value=8.6 Score=32.93 Aligned_cols=27 Identities=30% Similarity=0.790 Sum_probs=21.9
Q ss_pred CccccchHHHHHHHHhhcCC-ceeeEEE
Q 013391 142 GTGSGMGTLLISKIREEYPD-RMMLTFS 168 (444)
Q Consensus 142 GTGSG~gs~lle~l~d~yp~-~~i~~~~ 168 (444)
|-|.|+|..+++.||.++|+ ..+++..
T Consensus 7 GQGGGiG~~iv~~lr~~~~~~~eI~AlG 34 (131)
T PF12953_consen 7 GQGGGIGKQIVEKLRKELPEEVEIIALG 34 (131)
T ss_pred CCCChhHHHHHHHHHHhCCCCcEEEEEe
Confidence 44668999999999999998 6666554
No 39
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=61.97 E-value=26 Score=31.83 Aligned_cols=109 Identities=14% Similarity=0.223 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHhhhcCCCCCce-eeecCCCCccccchHHHHHHHHhhcCCceeeEEEeecCCCCCCccchhhHHHHHHH
Q 013391 112 LIDSVLDVVRKEAENCDCLQGFQ-VCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 190 (444)
Q Consensus 112 ~~~~~~d~ir~~~E~cD~lqgf~-~~~sl~GGTGSG~gs~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~ 190 (444)
+...+.+.|++.+|+ |+- |+.+.+-|.- -.++.++-.||.+||...+ .+++|+...+..-. -..-.-+.
T Consensus 27 ik~~L~~~i~~lie~-----G~~~fi~GgalG~D-~waae~vl~LK~~yp~ikL--~~v~Pf~~q~~~W~--~~~q~~y~ 96 (177)
T PF06908_consen 27 IKKALKKQIIELIEE-----GVRWFITGGALGVD-LWAAEVVLELKKEYPEIKL--ALVLPFENQGNNWN--EANQERYQ 96 (177)
T ss_dssp HHHHHHHHHHHHHTT-----T--EEEE---TTHH-HHHHHHHHTTTTT-TT-EE--EEEESSB-TTTTS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-----CCCEEEECCcccHH-HHHHHHHHHHHhhhhheEE--EEEEcccchhhcCC--HHHHHHHH
Confidence 334455566777764 433 3434433322 3356667778999997544 67889854443221 13334566
Q ss_pred HHhhccCceeeecChhhhhhhccccCCCCCCchhhhHHHHHHhccCccc
Q 013391 191 QLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCC 239 (444)
Q Consensus 191 ~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 239 (444)
.|.+.||-++.+....... ...|..-|+.+...-..+.+-
T Consensus 97 ~il~~aD~v~~vs~~~Y~~---------~~~~~~rn~fMvdhsd~~iav 136 (177)
T PF06908_consen 97 SILEQADFVVVVSERPYYS---------PGQLQKRNRFMVDHSDGLIAV 136 (177)
T ss_dssp HHHHH-SEEEESSSSB------------HHHHHHHHHHHHHHSSEEEEE
T ss_pred HHHHhCCEEEEccCCCCCC---------HHHHHHHhHHHHhCCCeEEEE
Confidence 7778899888886643221 012556677666665555443
No 40
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=60.34 E-value=9.6 Score=35.70 Aligned_cols=75 Identities=23% Similarity=0.349 Sum_probs=49.1
Q ss_pred CCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEeecCCCCCCc
Q 013391 99 NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 178 (444)
Q Consensus 99 nnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~~i~~~~v~P~~~~~~~ 178 (444)
....+|++..-..+.+.+...++...+++...+-++.-|||||+ +++.+.-.|+..++...+. ...+-.+..++.
T Consensus 97 ~~vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGa----iA~l~a~~l~~~~~~~~i~-~~tFg~P~vg~~ 171 (229)
T cd00519 97 GKVHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGA----LASLLALDLRLRGPGSDVT-VYTFGQPRVGNA 171 (229)
T ss_pred cEEcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHH----HHHHHHHHHHhhCCCCceE-EEEeCCCCCCCH
Confidence 34466776666667777788888888887777778888999876 6777777777665333333 333333344554
No 41
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=53.28 E-value=28 Score=29.12 Aligned_cols=35 Identities=9% Similarity=0.069 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccc
Q 013391 112 LIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSG 146 (444)
Q Consensus 112 ~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG 146 (444)
-.+++.+++++.+++.+.=+|++|+.++-|||-.=
T Consensus 40 ~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n 74 (116)
T TIGR00824 40 NAETLQEKYNAALADLDTEEEVLFLVDIFGGSPYN 74 (116)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHH
Confidence 34667788888888877778999999999997633
No 42
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=52.17 E-value=36 Score=28.60 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHhhhcCCCCCceeeecCCCCcc
Q 013391 112 LIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144 (444)
Q Consensus 112 ~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTG 144 (444)
-.+++.+++++.+++.+.-+|++++.++-|||-
T Consensus 39 ~~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp 71 (122)
T cd00006 39 SPDDLLEKIKAALAELDSGEGVLILTDLFGGSP 71 (122)
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCH
Confidence 345677788888888887789999999998864
No 43
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=49.49 E-value=9.3 Score=32.41 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=38.2
Q ss_pred CcCccccch-hhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCC
Q 013391 102 AKGHYTEGA-ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (444)
Q Consensus 102 a~G~~~~g~-~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~ 161 (444)
..|++..-. ...+.+.+.|++.+++.....-++.=||+||+ ++..+.-.+....+.
T Consensus 35 h~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGa----lA~l~a~~l~~~~~~ 91 (140)
T PF01764_consen 35 HSGFLDAAEDSLYDQILDALKELVEKYPDYSIVITGHSLGGA----LASLAAADLASHGPS 91 (140)
T ss_dssp EHHHHHHHHCHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHH----HHHHHHHHHHHCTTT
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhccchHHH----HHHHHHHhhhhcccc
Confidence 345544334 56678888888888877655555667899765 777777777776654
No 44
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=45.57 E-value=72 Score=32.07 Aligned_cols=95 Identities=18% Similarity=0.151 Sum_probs=56.1
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEeecCCCCCCccchhhHHHH
Q 013391 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATL 187 (444)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~l 187 (444)
...+.+.++.+.|+..+ +..+||+|+|+.+ |= --++.+++.+-...++-.+++=+..|....+.........++
T Consensus 63 mt~~~w~~la~~I~~~~---~~~dG~VVtHGTD--Tm-eeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 63 MTPEDWQHIADDIKANY---DDYDGFVILHGTD--TM-AYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred CCHHHHHHHHHHHHHHh---ccCCeEEEeeccc--hH-HHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 34556667777777655 5689999999766 42 456667776555556667777778887544433334444444
Q ss_pred HHHHHhhccCceeeecChhhhh
Q 013391 188 SVHQLVENADECMVLDNEALYD 209 (444)
Q Consensus 188 sl~~l~e~sd~~i~~dN~~l~~ 209 (444)
.+..-.... .|.++=|+.++.
T Consensus 137 ~~A~~~~~~-GV~V~f~~~i~~ 157 (335)
T PRK09461 137 YVAANYPIN-EVTLFFNNKLFR 157 (335)
T ss_pred HHHcCCCCC-eEEEEECCEeec
Confidence 443322233 455555555554
No 45
>PLN02408 phospholipase A1
Probab=43.39 E-value=40 Score=34.37 Aligned_cols=65 Identities=23% Similarity=0.310 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHhhhcCC--CCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEeecCCCCCCcc
Q 013391 111 ELIDSVLDVVRKEAENCDC--LQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179 (444)
Q Consensus 111 ~~~~~~~d~ir~~~E~cD~--lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~~i~~~~v~P~~~~~~~~ 179 (444)
.+.+.+++.|++.+++... ..-.+.-||+||+ ++...+-.|+..++..+.+.+..+-.|..|+..
T Consensus 179 s~r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGA----LAtLaA~dl~~~~~~~~~V~v~tFGsPRVGN~~ 245 (365)
T PLN02408 179 SLQEMVREEIARLLQSYGDEPLSLTITGHSLGAA----LATLTAYDIKTTFKRAPMVTVISFGGPRVGNRS 245 (365)
T ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEeccchHHH----HHHHHHHHHHHhcCCCCceEEEEcCCCCcccHH
Confidence 4677888888888887654 2335566799765 788778888888776655556666666666643
No 46
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=42.37 E-value=25 Score=33.08 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=22.3
Q ss_pred eeecCCCCccccchHHHHHHHHhhcCCc
Q 013391 135 VCHSLGGGTGSGMGTLLISKIREEYPDR 162 (444)
Q Consensus 135 ~~~sl~GGTGSG~gs~lle~l~d~yp~~ 162 (444)
++-+++||+|||=++ ++..|.+.++..
T Consensus 9 iiIgIaG~SgSGKTT-va~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGKTT-VAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCHHH-HHHHHHHHhCcC
Confidence 566899999999855 888999998755
No 47
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=38.19 E-value=30 Score=29.51 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhcCC-CCCceeeecCCCC
Q 013391 113 IDSVLDVVRKEAENCDC-LQGFQVCHSLGGG 142 (444)
Q Consensus 113 ~~~~~d~ir~~~E~cD~-lqgf~~~~sl~GG 142 (444)
...+.++|++.+|+++. =+|++++.++ ||
T Consensus 41 ~gt~~~~I~~ai~~~~~~~dgVlvl~DL-Gg 70 (125)
T TIGR02364 41 LGTSPDKIIEAIEKADNEADGVLIFYDL-GS 70 (125)
T ss_pred ccchHHHHHHHHHHhcCCCCCEEEEEcC-CC
Confidence 34556788888888866 7899999999 66
No 48
>PRK13660 hypothetical protein; Provisional
Probab=34.35 E-value=2.1e+02 Score=26.09 Aligned_cols=79 Identities=14% Similarity=0.265 Sum_probs=46.1
Q ss_pred hHHHHHHHHhhcCCceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecChhhhhhhccccCCCCCCchhhhH
Q 013391 148 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNH 227 (444)
Q Consensus 148 gs~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~ 227 (444)
++-++-.||.+||...+ ..++|+...++.-. -..-.-+..+.+.||.++.+...-- . ....|..-|+
T Consensus 58 AaEvvl~LK~~yp~lkL--~~~~PF~~q~~~W~--e~~q~~y~~i~~~aD~v~~vs~~~y--------~-~p~q~~~rn~ 124 (182)
T PRK13660 58 AAEVVLELKEEYPDLKL--AVITPFEEHGENWN--EANQEKLANILKQADFVKSISKRPY--------E-SPAQFRQYNQ 124 (182)
T ss_pred HHHHHHHHHhhCCCeEE--EEEeCccchhhcCC--HHHHHHHHHHHHhCCEEEEecCCCC--------C-ChHHHHHHHH
Confidence 55667789999997654 45778754433211 1222334566778999988844310 0 0123667777
Q ss_pred HHHHHhccCccc
Q 013391 228 LISATMSGVTCC 239 (444)
Q Consensus 228 ~ia~~i~~~t~~ 239 (444)
.+...-..+.+-
T Consensus 125 fmv~~sd~~i~~ 136 (182)
T PRK13660 125 FMLEHTDGALLV 136 (182)
T ss_pred HHHHccCeEEEE
Confidence 777766555543
No 49
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=31.20 E-value=1.5e+02 Score=29.69 Aligned_cols=93 Identities=17% Similarity=0.164 Sum_probs=54.4
Q ss_pred chhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEeecCCCCCCccchhhHHHHH
Q 013391 109 GAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLS 188 (444)
Q Consensus 109 g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~ls 188 (444)
..+.+..+.+.|++.+++ .+||+|+|+.+ |= --++..+..+-+. ++-.+++=+..|....+....+....++.
T Consensus 61 t~~~w~~l~~~I~~~~~~---~dGiVVtHGTD--Tm-eeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al~ 133 (323)
T cd00411 61 TDEDWLKIAKDINELYDS---YDGFVITHGTD--TM-EETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAVY 133 (323)
T ss_pred CHHHHHHHHHHHHHHHHh---cCcEEEEcCcc--cH-HHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHHH
Confidence 455666677777776653 79999999766 32 3455555544444 67677777788875444444444444444
Q ss_pred HHHHhh--ccCceeeecChhhhh
Q 013391 189 VHQLVE--NADECMVLDNEALYD 209 (444)
Q Consensus 189 l~~l~e--~sd~~i~~dN~~l~~ 209 (444)
+....+ .....|.| |+.+++
T Consensus 134 ~A~~~~~~~~gV~V~f-~~~i~~ 155 (323)
T cd00411 134 VAANYDSRGRGVLVVF-NDRIFR 155 (323)
T ss_pred HHcCcccCCCeEEEEE-CCEEec
Confidence 443322 33455555 444543
No 50
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=30.71 E-value=1.5e+02 Score=29.52 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=47.7
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEeecCCCCC-CccchhhHHH
Q 013391 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVS-DTVVEPYNAT 186 (444)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~~i~~~~v~P~~~~~-~~~~~~yN~~ 186 (444)
...+.+.++.+.|++.+++ .+||+|+|+.+ |= -.++.++..+-+..++-.+++=+..|....+ |...-.++++
T Consensus 54 ~t~~~~~~la~~i~~~~~~---~~GvVVtHGTD--Tm-e~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av 127 (313)
T PF00710_consen 54 MTPEDWLELARAIQAALDD---YDGVVVTHGTD--TM-EETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAV 127 (313)
T ss_dssp --HHHHHHHHHHHHHHHTT---CSEEEEE--ST--TH-HHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh---cCeEEEecCch--HH-HHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHH
Confidence 3455666677777777644 89999999766 32 2344455555454456667777888874333 3333334444
Q ss_pred HHHHHHhhccCceeeecChhhhh
Q 013391 187 LSVHQLVENADECMVLDNEALYD 209 (444)
Q Consensus 187 lsl~~l~e~sd~~i~~dN~~l~~ 209 (444)
....+- + .-.++++-|+.++.
T Consensus 128 ~~A~~~-~-~~GV~v~f~~~i~~ 148 (313)
T PF00710_consen 128 RVAASP-A-GPGVLVVFNGRIYA 148 (313)
T ss_dssp HHHHSG-G-TSSEEEEETTEEEE
T ss_pred HHHhcc-c-CCceEEEeCCCccc
Confidence 333332 2 34444444555553
No 51
>PTZ00489 glutamate 5-kinase; Provisional
Probab=29.80 E-value=2e+02 Score=27.90 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=30.6
Q ss_pred HHhhcCCceeeEEEeecCCCCCCccchhhHHHHHHHHHhhccCceeeecCh
Q 013391 155 IREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNE 205 (444)
Q Consensus 155 l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~dN~ 205 (444)
..+.+.+..+.+..+++.......-.+..|+.-++..|.+. .++|+=|+
T Consensus 87 y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~--g~VPIine 135 (264)
T PTZ00489 87 YYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISH--KVIPIINE 135 (264)
T ss_pred HHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHC--CCEEEECC
Confidence 44555555566666766533333444556888889999876 56777544
No 52
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=29.63 E-value=30 Score=31.05 Aligned_cols=51 Identities=12% Similarity=0.328 Sum_probs=32.2
Q ss_pred cCChhHHHHHHHHHHHHHhh--hccccccccccCCCCChhhHHHHHHHHHHHHHHHHHH
Q 013391 369 GNSTSIQEMFRRVSEQFTAM--FRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQY 425 (444)
Q Consensus 369 ~N~t~i~~~l~~l~~~~~~m--~~kkAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~ 425 (444)
..=.-|...+.+|.+-+..- |..-.||+||+.|+.||+. .+.+|++-++-.
T Consensus 92 ehEq~vt~~I~~L~~~a~~~kD~~T~nFLqWfv~EQ~eEe~------l~~~I~d~~~~a 144 (167)
T COG1528 92 EHEQKVTSSINELAEVAREEKDYATFNFLQWFVAEQVEEEK------LFKTILDKLELA 144 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHc
Confidence 34444555566665555443 4677899999999988754 444555555443
No 53
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=29.38 E-value=1.7e+02 Score=22.44 Aligned_cols=55 Identities=13% Similarity=0.270 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhhc--CCCCCceeeecCC----CCccccchHHHHHHHHhhcCCceeeEEEeec
Q 013391 114 DSVLDVVRKEAENC--DCLQGFQVCHSLG----GGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171 (444)
Q Consensus 114 ~~~~d~ir~~~E~c--D~lqgf~~~~sl~----GGTGSG~gs~lle~l~d~yp~~~i~~~~v~P 171 (444)
++..+.++..++.| ...+.+.|+|+.| +|. +-..+.+.|++.+....+..+.-.+
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~~~~ 69 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYRDAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEEE--
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheeeecC
Confidence 34455556666555 3567888999888 553 7888888887766566666554433
No 54
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=29.34 E-value=27 Score=33.85 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHH
Q 013391 115 SVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKI 155 (444)
Q Consensus 115 ~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l 155 (444)
++++++|+.+++-..+ +++|.|+|+.++..|.=
T Consensus 2 eil~~l~~~i~~~~pI--------ig~gaGtGlsAk~ae~g 34 (268)
T PF09370_consen 2 EILDRLRAQIKAGKPI--------IGAGAGTGLSAKCAEKG 34 (268)
T ss_dssp HHHHHHHHHHHTT--E--------EEEEESSHHHHHHHHHT
T ss_pred hHHHHHHHHHhCCCce--------EEEeeccchhhHHHHhc
Confidence 6788999998876555 56678899988887653
No 55
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=28.96 E-value=27 Score=16.70 Aligned_cols=8 Identities=75% Similarity=1.427 Sum_probs=5.9
Q ss_pred ccccccCc
Q 013391 255 VNLIPFPR 262 (444)
Q Consensus 255 ~~L~P~p~ 262 (444)
+.|+|||+
T Consensus 3 sGlI~fpR 10 (11)
T PF08259_consen 3 SGLIPFPR 10 (11)
T ss_pred ccccccCC
Confidence 45788886
No 56
>PF03283 PAE: Pectinacetylesterase
Probab=27.87 E-value=86 Score=31.92 Aligned_cols=49 Identities=24% Similarity=0.495 Sum_probs=33.1
Q ss_pred cccchhhHHHHHHHHHHH-hhhcCCCCCceeeecCCCCccccchHHH-HHHHHhhcCC
Q 013391 106 YTEGAELIDSVLDVVRKE-AENCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPD 161 (444)
Q Consensus 106 ~~~g~~~~~~~~d~ir~~-~E~cD~lqgf~~~~sl~GGTGSG~gs~l-le~l~d~yp~ 161 (444)
+-.|....+.+++.|... +.+.+ -+++..+-+|| +|+.+ ++.+++.+|.
T Consensus 133 ~frG~~i~~avl~~l~~~gl~~a~---~vlltG~SAGG----~g~~~~~d~~~~~lp~ 183 (361)
T PF03283_consen 133 YFRGYRILRAVLDDLLSNGLPNAK---QVLLTGCSAGG----LGAILHADYVRDRLPS 183 (361)
T ss_pred EeecHHHHHHHHHHHHHhcCcccc---eEEEeccChHH----HHHHHHHHHHHHHhcc
Confidence 446778888888777665 44443 34666666666 44544 8889999995
No 57
>PLN00131 hypothetical protein; Provisional
Probab=27.65 E-value=73 Score=28.13 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=22.5
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchH
Q 013391 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGT 149 (444)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs 149 (444)
.|..++--+.|.|...+...|.+ --|+||| |||-|.
T Consensus 57 ~~A~FF~F~sd~iDF~LS~Md~~-----PLSiGG~-GS~~~~ 92 (218)
T PLN00131 57 WGAPFFIFFAEWIDFLLSSMEGF-----PLSIGGG-GSDAGP 92 (218)
T ss_pred ccchHHHHHHHHHHHHHHHhhcC-----ceeecCC-CCCCCc
Confidence 34555555566677666655533 4578877 888764
No 58
>PLN02802 triacylglycerol lipase
Probab=26.06 E-value=1.1e+02 Score=32.60 Aligned_cols=64 Identities=25% Similarity=0.332 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHhhhcCC--CCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEeecCCCCCCc
Q 013391 111 ELIDSVLDVVRKEAENCDC--LQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 178 (444)
Q Consensus 111 ~~~~~~~d~ir~~~E~cD~--lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~~i~~~~v~P~~~~~~~ 178 (444)
.+.+.+++.|++++++... ++-++.-||+||+ ++...+-.|+...+....+.+..|-.+..|+.
T Consensus 309 S~reqVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGA----LAtLaA~dL~~~~~~~~pV~vyTFGsPRVGN~ 374 (509)
T PLN02802 309 SLSESVVGEVRRLMEKYKGEELSITVTGHSLGAA----LALLVADELATCVPAAPPVAVFSFGGPRVGNR 374 (509)
T ss_pred hHHHHHHHHHHHHHHhCCCCcceEEEeccchHHH----HHHHHHHHHHHhCCCCCceEEEEcCCCCcccH
Confidence 3567788889999887632 3445667799765 77777777877766543334555555566654
No 59
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=24.98 E-value=2e+02 Score=29.09 Aligned_cols=48 Identities=19% Similarity=0.394 Sum_probs=37.4
Q ss_pred chhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCC
Q 013391 109 GAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (444)
Q Consensus 109 g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~ 161 (444)
++.+.|...++|+...+.-+ .|+.|++||--||+.=.|+-.+++++..
T Consensus 9 ~~nV~eA~~eRl~~if~~f~-----~VcVSFSGGKDS~lmLhL~~~~ar~~~~ 56 (407)
T COG3969 9 DENVLEAAIERLEWIFNTFP-----RVCVSFSGGKDSGLMLHLVAEVARENGR 56 (407)
T ss_pred cchHHHHHHHHHHHHHhcCC-----eEEEEecCCCchhHHHHHHHHHHHHhCC
Confidence 56678888899999988776 5688999999999987776666555544
No 60
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=24.78 E-value=2.4e+02 Score=29.25 Aligned_cols=90 Identities=20% Similarity=0.162 Sum_probs=53.4
Q ss_pred chhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEeecCCCCC-CccchhhHHHH
Q 013391 109 GAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVS-DTVVEPYNATL 187 (444)
Q Consensus 109 g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~~i~~~~v~P~~~~~-~~~~~~yN~~l 187 (444)
..+.+..+.+.|++.++ +..+||+|+|+.+ |= -.++..+..+-+..|+-.+++=+-.|....+ |...-.++++.
T Consensus 121 tp~~w~~La~~I~~~~~--~~~dGvVVtHGTD--TM-~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av~ 195 (404)
T TIGR02153 121 KPEYWIKIAEAVAKALK--EGADGVVVAHGTD--TM-AYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAVR 195 (404)
T ss_pred CHHHHHHHHHHHHHHhh--cCCCcEEEecCCh--hH-HHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHHH
Confidence 45566667777777765 4569999999766 43 4455555554444466667777788864433 44333344443
Q ss_pred HHHHHhhccCceeeecCh
Q 013391 188 SVHQLVENADECMVLDNE 205 (444)
Q Consensus 188 sl~~l~e~sd~~i~~dN~ 205 (444)
+..- ..+-..++|++.
T Consensus 196 -~A~~-~~~gV~V~f~g~ 211 (404)
T TIGR02153 196 -AATS-PIAEVTVVMHGE 211 (404)
T ss_pred -HHhC-CCCcEEEEECCc
Confidence 3322 345566667654
No 61
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=23.66 E-value=1.3e+02 Score=30.14 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccc
Q 013391 112 LIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSG 146 (444)
Q Consensus 112 ~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG 146 (444)
-.+++.+++++.+++.+.-+|++++.++-|||-.=
T Consensus 41 ~~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP~N 75 (322)
T PRK15088 41 NAETLIEKYNAQLAKLDTSKGVLFLVDTWGGSPFN 75 (322)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHH
Confidence 34667778888888887778999999999997633
No 62
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=22.91 E-value=1.8e+02 Score=25.49 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=36.1
Q ss_pred chhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceee
Q 013391 109 GAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMML 165 (444)
Q Consensus 109 g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~~i~ 165 (444)
+....+.+.+.+...++.-|+=+|++|+.++-|||-+=.+++++ .+.|...++
T Consensus 38 ~~~~~~~l~~~~~~~~~~~d~~eevl~ltDl~GGSP~N~A~~l~----~~~~~~~vi 90 (143)
T COG2893 38 GEDSEDLLTKQIAAAIAALDSGEGVLFLTDLFGGSPFNVASRLA----MEGPRVEVI 90 (143)
T ss_pred CCChHHHHHHHHHHHHhhcCCCCcEEEEEecCCCCHhHHHHHHH----hhCCCceEE
Confidence 33344555666666677777779999999999998766666555 555554443
No 63
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=22.75 E-value=1.9e+02 Score=29.01 Aligned_cols=95 Identities=17% Similarity=0.090 Sum_probs=55.9
Q ss_pred chhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEeecCCCCCCccchhhHHHHH
Q 013391 109 GAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLS 188 (444)
Q Consensus 109 g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~ls 188 (444)
..+.+..+.+.|++..+ ..+||+|+|+.+ |= -.++..+..+-+. +|-.++|=+-.|....+.........++.
T Consensus 60 tp~~w~~la~~I~~~~~---~~dG~VVtHGTD--Tm-e~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al~ 132 (336)
T TIGR00519 60 KPEYWVEIAEAVKKEYD---DYDGFVITHGTD--TM-AYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAVR 132 (336)
T ss_pred CHHHHHHHHHHHHHHHh---cCCeEEEccCCc--hH-HHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHHH
Confidence 45566677777777665 389999999776 43 3455566654444 67777777888874434334444444444
Q ss_pred HHHHhhc-----cCceeeecChhhhhh
Q 013391 189 VHQLVEN-----ADECMVLDNEALYDI 210 (444)
Q Consensus 189 l~~l~e~-----sd~~i~~dN~~l~~~ 210 (444)
+....+. -..++++-|+.|++-
T Consensus 133 ~A~~~~~~~~i~~~gV~v~f~~~i~~a 159 (336)
T TIGR00519 133 AATEYIAEVTVCMHGVTLDFNCRLHRG 159 (336)
T ss_pred HHcCccccccccCceeEEEccCeEeec
Confidence 4333221 224555666666653
No 64
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=22.20 E-value=2.6e+02 Score=27.92 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEEeecCCCCCCccchhhHHHHHH
Q 013391 110 AELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSV 189 (444)
Q Consensus 110 ~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl 189 (444)
.+.+.++.+.|+..+. -+..+||+|+|+.+ |= --++..+..+-+..+|-.+++=+-.|....+.........++.+
T Consensus 59 ~~~w~~la~~i~~~~~-~~~~dG~VVtHGTD--Tm-eeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av~~ 134 (323)
T smart00870 59 PADWLKLAKRINEALA-DDGYDGVVVTHGTD--TL-EETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAVRV 134 (323)
T ss_pred HHHHHHHHHHHHHHhc-cCCCCEEEEecCCc--cH-HHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHHHH
Confidence 4445555555555433 25789999999766 33 34555555544545666677777888744333333333333333
Q ss_pred HHHhh--ccCceeeecChhhhh
Q 013391 190 HQLVE--NADECMVLDNEALYD 209 (444)
Q Consensus 190 ~~l~e--~sd~~i~~dN~~l~~ 209 (444)
..-.+ .. .++++=|+.+++
T Consensus 135 A~~~~a~~~-GV~V~f~~~i~~ 155 (323)
T smart00870 135 AASPEARGR-GVLVVFNDEIHR 155 (323)
T ss_pred HcCcccCCC-EEEEEECCEeee
Confidence 22222 22 344444666654
No 65
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=21.72 E-value=1.1e+02 Score=22.97 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=22.5
Q ss_pred CCceeeecCCCCccccchHHHHHHHHhhcCCceee
Q 013391 131 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMML 165 (444)
Q Consensus 131 qgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~~i~ 165 (444)
..+.+.-..= |-|+|+.|+..+.+.++.+.+.
T Consensus 30 ~~~~v~~~~r---g~Gig~~ll~~~~~~~~~~~i~ 61 (79)
T PF13508_consen 30 GYLAVDPEYR---GKGIGSKLLNYLLEKAKSKKIF 61 (79)
T ss_dssp EEEEE-GGGT---TSSHHHHHHHHHHHHHTCSEEE
T ss_pred EEEEECHHHc---CCCHHHHHHHHHHHHcCCCcEE
Confidence 3334444444 4589999999999999887764
No 66
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=21.30 E-value=1.3e+02 Score=29.28 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=29.0
Q ss_pred CCCCCcCccccchhhHHHHH-HHHHHHhhhcCCCCCceeeecCCCCccccchHHHHHHHHhhcCCceeeEEE
Q 013391 98 GNNWAKGHYTEGAELIDSVL-DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFS 168 (444)
Q Consensus 98 gnnwa~G~~~~g~~~~~~~~-d~ir~~~E~cD~lqgf~~~~sl~GGTGSG~gs~lle~l~d~yp~~~i~~~~ 168 (444)
.-.++.|||..+.+-.++.+ .++...+|+++-=.| .=+-++|.|+| |+ +..+...| +..+.++.
T Consensus 28 ~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G-~~vLDiGcGwG-~~----~~~~a~~~-g~~v~git 92 (273)
T PF02353_consen 28 TMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPG-DRVLDIGCGWG-GL----AIYAAERY-GCHVTGIT 92 (273)
T ss_dssp T---S----SSTT--HHHHHHHHHHHHHTTTT--TT--EEEEES-TTS-HH----HHHHHHHH---EEEEEE
T ss_pred CCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCC-CEEEEeCCCcc-HH----HHHHHHHc-CcEEEEEE
Confidence 34567788877766555555 467778888863333 45557776665 33 34455666 44444443
No 67
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=20.38 E-value=5.4e+02 Score=25.55 Aligned_cols=64 Identities=19% Similarity=0.399 Sum_probs=42.0
Q ss_pred CCCCCCCCcCccccchhhHHHHHHHHHHHhhhcCCCCCce----eeecCCCCccccchHHHHHHHHhhcCCce
Q 013391 95 SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQ----VCHSLGGGTGSGMGTLLISKIREEYPDRM 163 (444)
Q Consensus 95 ~g~gnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~----~~~sl~GGTGSG~gs~lle~l~d~yp~~~ 163 (444)
.+.-|-|..|. ....+.+.|.|++..|+.. ++--- +.-+++|+-=--..-.|.+.+|+.||...
T Consensus 32 ~~~Tnh~~ig~----~~~~~rie~~i~~A~~k~g-~d~~~~lr~lgL~lSg~d~e~~~~~lv~~~R~~fps~a 99 (336)
T KOG1794|consen 32 GGGTNHWLIGS----TTCASRIEDMIREAKEKAG-WDKKGPLRSLGLGLSGTDQEDKNRKLVTEFRDKFPSVA 99 (336)
T ss_pred ccccccccCCc----hHHHHHHHHHHHHHHhhcC-CCccCccceeeeecccCCchhHHHHHHHHHHHhccchh
Confidence 35667788773 4577888888988887742 22112 23355554333457788999999999765
Done!